BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006672
         (636 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/647 (61%), Positives = 486/647 (75%), Gaps = 33/647 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           +H PS +  ETH I LIH+SN+  QL QIHAQI LHNLF++SR+ TQLISS+   KS+DY
Sbjct: 32  AHGPSRS-PETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDY 90

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           ALSIF  F   NL +FN LIRGLAENS F+  +SHFV MLRLS+RP+RLT PFV KSVA+
Sbjct: 91  ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  + LGR LH  ++K G+E+D+FVRV L DMYV++G+     ++FDE+P++NK+ES+LL
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           WNVLINGC K+G L KA  LF  MP++N  SW SLI+GF+R GDL +A ELF QMPEK V
Sbjct: 211 WNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNV 270

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSWT MINGFSQNG+ EKAL+MF++ML+ GVR ND TVVSAL AC K+GAL+ G R+HNY
Sbjct: 271 VSWTTMINGFSQNGDHEKALSMFWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNY 330

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +S N F L   IGTALVDMYAKCGNI++AS VF ETK KDLLTW+ MIWG AIHG ++QA
Sbjct: 331 LSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQA 390

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +Q F KM  +G  PD  +FLAILTAC +SG V   LNFF+SMR DY IEP++KH+T++V+
Sbjct: 391 LQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVD 450

Query: 442 LLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSS 473
           LL R G+  +     Q+                            +  KLLQL+PKHP S
Sbjct: 451 LLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKHPGS 510

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEI 531
           YV LSN+YAA GRW+DV RVRTLM+ R ++KDPGWSYIEV G VH F AG H    A+EI
Sbjct: 511 YVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEI 570

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
             KLE+I A A+++GYMP T WVLHNI +EEKE+ALG HSEKLALAFGLI T PG+TI+I
Sbjct: 571 SLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGSTIRI 630

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           VK L +CGDCHS+MKYASK+S+REI+LRD  RFH+FKDGTCSC DYW
Sbjct: 631 VKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 677


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 386/660 (58%), Positives = 483/660 (73%), Gaps = 33/660 (5%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           T+   P +++ +   P    TE H ISLIH S +  QL QIHAQII+HNL +SS ITTQL
Sbjct: 60  TSENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIIIHNLSSSSLITTQL 119

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           ISS+SL KSI+++L++F+H  PKNL  FN LIRGL  NSHF + I HF  MLR  ++P+R
Sbjct: 120 ISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGLTTNSHFFNAIFHFRLMLRSGIKPDR 179

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           LTYPFV KS+A L    LG  +HC+I++ G+E D+FVRV L DMYV++ K   AFKVFDE
Sbjct: 180 LTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSAFKVFDE 239

Query: 190 TPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
           +PE+ +   S LLWNVLI GC K G ++KAV+LF  MPKK   SW +LIDGF + GD+ +
Sbjct: 240 SPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAMPKKENVSWSTLIDGFAKNGDMDR 299

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ELF+QMPEK VVSWT M++GFS+NG++EKAL+MF +ML+ GVR N FT+VSALSACAK
Sbjct: 300 AMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAK 359

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +G LEAG+R+H YI  N   L  A+GTALVDMYAKCGNIE+AS VFGET++K + TWT M
Sbjct: 360 IGGLEAGLRIHKYIKDNGLHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVM 419

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           IWG AIHG  EQAI  FK+MM++G +PD  VFLA+LTAC +SGQV + LNFFDSMR DY 
Sbjct: 420 IWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYC 479

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSF 460
           IEPS+KH+T++V++L R GQ  +                              + ++ + 
Sbjct: 480 IEPSMKHYTLIVDMLGRSGQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFAL 539

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            KLL+L+P H  +Y+ LSN YAA G+W+D  RVR LMQ R + K+ GWS IEV G VHRF
Sbjct: 540 NKLLKLEPTHTGNYIFLSNAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRF 599

Query: 521 EAGGH--KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAF 577
            +G H  K +K I  KLE+IMAGA +QGY+PGTEWVLHN+ +EEKE+ LG H EKLALAF
Sbjct: 600 VSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAF 659

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            LI T+PG TI+IVK L +CGDCHSLMKYASKISQREI+LRD  RFH+FKDG+CSCRD+W
Sbjct: 660 ALICTSPGMTIRIVKNLQVCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/638 (58%), Positives = 461/638 (72%), Gaps = 32/638 (5%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           ETH I LIH+SNST +LRQIH Q+   N+F+SSR+ TQ ISS S   S+DYA+SIF  F 
Sbjct: 42  ETHFIDLIHASNSTHKLRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFE 101

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            KN ++FN LIRGLAENS F+S IS FV ML+  + P+RLT+PFV KS A+LS   +GR 
Sbjct: 102 LKNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRA 161

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LHC I+K G+E+D+FVRV L DMYV++ +   A KVFDE+PE  K+ SVL+WNVLI+G  
Sbjct: 162 LHCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYC 221

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           ++G L KA ELF  MPKK+  SW SLI+GFM+ GD+ +A ELF +MPEK VVSWT M+NG
Sbjct: 222 RMGDLVKATELFDSMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNG 281

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           FSQNG+ EKAL  FF ML+ G R ND+T+VSALSACAK+GAL+AG+R+HNY+S N F L 
Sbjct: 282 FSQNGDPEKALETFFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLN 341

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             IGTALVDMYAKCGNIE A  VF ETKEK LL W+ MIWG AIHG + +A+QYF+ M +
Sbjct: 342 LVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKF 401

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           +GT+PD  VFLA+L AC +SGQV   L FFD+MR  Y IEPS+KH+T+VV++L R G+  
Sbjct: 402 TGTKPDSVVFLAVLNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLD 461

Query: 451 QGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
           +                              + ++ +  KLLQL+PKHP SYV LSN YA
Sbjct: 462 EALKFIRAMPITPDFVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYA 521

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMA 540
           + GRW D  RVR  M+     KDPGWS+IEV+  +HRF AG   H  A EI+SKL++I A
Sbjct: 522 SVGRWDDAERVRVSMRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISA 581

Query: 541 GAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
            ARE+GY    E VLHNI+EE++E ALG HSEKLALAFG++ T PGTT++IVK L +C D
Sbjct: 582 SAREKGYTKEIECVLHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVD 641

Query: 600 CHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           CHS MKYASK+S+REI+LRD  RFH+F DG CSC DYW
Sbjct: 642 CHSFMKYASKMSKREIILRDMKRFHHFNDGVCSCGDYW 679


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 319/638 (50%), Positives = 440/638 (68%), Gaps = 33/638 (5%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           E+H ISLIH+   T  LR +HAQI+   +  SSR+  QL+S +SL KS DY+LSIF +  
Sbjct: 29  ESHFISLIHACKDTASLRHVHAQILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            +N  + N LIRGL EN+ F+S + HF+ MLRL V+P+RLT+PFV KS + L    LGR 
Sbjct: 88  ERNPFVLNALIRGLTENARFESSVRHFILMLRLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH   +K+ V+ D+FVR+ L DMY + G+ + AF+VF+E+P++ K ES+L+WNVLING  
Sbjct: 148 LHAATLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLINGYC 207

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           +   +  A  LF  MP++N  SW +LI G++  G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTTLING 267

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           FSQ G+ E A++ +F+ML+ G++ N++T+ + LSAC+K GAL +G+R+H YI  N   L 
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
            AIGTALVDMYAKCG ++ A+ VF     KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           SG +PD  VFLA+LTAC  S +V L LNFFDSMR DY IEP++KH+ +VV+LL R G+ +
Sbjct: 388 SGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLN 447

Query: 451 Q----------------------------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
           +                            GY+ +++    LL+L P+   SY+ L   +A
Sbjct: 448 EAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFLDKTHA 507

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           ++G  +DV + R  +Q+R  ++  GWSYIE++G +++F AG   HKL +EI  KL++I++
Sbjct: 508 SKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKLDEIIS 567

Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
            A ++GY PG +W +H+I+EE KE   G HSEKLAL  G ++T PGTTI+I+K L ICGD
Sbjct: 568 LAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNLRICGD 627

Query: 600 CHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           CHSLMKY SKISQR+I+LRD R FH+FKDG CSC DYW
Sbjct: 628 CHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665


>gi|297848728|ref|XP_002892245.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338087|gb|EFH68504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 664

 Score =  649 bits (1673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/637 (49%), Positives = 438/637 (68%), Gaps = 32/637 (5%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           E+H ISLIH+   T  LR +HA I+   +  SSR+  QL+S +SL KS DY+LSIF +  
Sbjct: 29  ESHFISLIHTCKDTVSLRLVHAHILRRGVL-SSRVAAQLVSCSSLLKSPDYSLSIFRNSE 87

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            +N  +FN LIRGL EN+ F+  + HF+ ML L V+P+RLT+PFV KS + L    LGR 
Sbjct: 88  ERNPFVFNALIRGLTENARFECSVRHFILMLTLGVKPDRLTFPFVLKSNSKLGFRWLGRA 147

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH   +K+ V+ D+FVRV L DMY + G+   AF+VF+ETP++ K ES+LLWNVL+NG  
Sbjct: 148 LHAATLKNFVDCDSFVRVSLVDMYAKTGQLNHAFQVFEETPDRIKKESILLWNVLVNGYC 207

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           +   ++ A  LF  MP++N  SW +LI G++  G+L +A +LFE MPEK VVSWT +ING
Sbjct: 208 RAKDMQMATTLFRSMPERNSGSWSTLIKGYVDNGELNRAKQLFELMPEKNVVSWTTLING 267

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           FSQ G+ E A++ +F+ML+ G++ N++TV + LSAC+K GAL +G+R+H YI  N   L 
Sbjct: 268 FSQTGDYETAISTYFEMLEKGLKPNEYTVAAVLSACSKSGALGSGIRIHGYILDNGIKLD 327

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
            AIGT+L+DMYAKCG ++ A+ VF     KD+L+WTAMI G A+HGR+ QAIQ F++MMY
Sbjct: 328 RAIGTSLLDMYAKCGEVDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCFRQMMY 387

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           SG +PD  VFLA+LTAC  SG+V L LNFFDSMR DY IEP++KH+ +VV+LL R G+  
Sbjct: 388 SGEKPDEVVFLAVLTACLNSGEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGRAGKLD 447

Query: 451 QGYQ---------------------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
           + ++                            +      LL+L P+   SY+ L   +AA
Sbjct: 448 EAHELVEYMPINPDLTTWAALYRACKAHKSNRTDIVLQNLLELDPELRGSYIFLDKTHAA 507

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
           +G+++DV + R  +Q++  ++  G SYIE++  +++F A    HK A+EI  KLE I++ 
Sbjct: 508 KGKYQDVEKRRLSLQKKVKERSMGCSYIELDCQLNKFAADDYTHKQAQEIRLKLEGIISL 567

Query: 542 AREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
           A E+GY+PG +W +H+I+EE++E++ G HSEKLAL  GL++T PGTTI+I+K L ICGDC
Sbjct: 568 AIERGYIPGADWSIHDIEEEEKESVTGIHSEKLALTLGLLRTAPGTTIRIIKNLRICGDC 627

Query: 601 HSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           HSLMKY SKISQR I+LRD R FH+FKDG+CSC DYW
Sbjct: 628 HSLMKYVSKISQRGILLRDARQFHHFKDGSCSCGDYW 664


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/435 (56%), Positives = 299/435 (68%), Gaps = 53/435 (12%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           VSL+D +++ G+L    +LF++ P               Q  +AE  L      L  GVR
Sbjct: 177 VSLVDMYVKIGELGFGLQLFDESP---------------QRNKAESIL------LWNGVR 215

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            ND TVVSAL AC K+GAL+ G R+HNY+S N F L   IGTALVDMYAKCGNI++AS V
Sbjct: 216 PNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRV 275

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F ETK KDLLTW+ MIWG AIHG ++QA+Q F KM  +G  PD  +FLAILTAC +SG V
Sbjct: 276 FVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNV 335

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------- 458
              LNFF+SMR DY IEP++KH+T++V+LL R G+  +     Q+               
Sbjct: 336 DQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFC 395

Query: 459 -------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                        +  KLLQL+PKHP SYV LSN+YAA GRW+DV RVRTLM+ R ++KD
Sbjct: 396 ACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKD 455

Query: 506 PGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEK 562
           PGWSYIEV G VH F AG H    A+EI  KLE+I A A+++GYMP T WVLHNI +EEK
Sbjct: 456 PGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHNIEEEEK 515

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           E+ALG HSEKLALAFGLI T PG+TI+IVK L +CGDCHS+MKYASK+S+REI+LRD  R
Sbjct: 516 EDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKR 575

Query: 622 FHYFKDGTCSCRDYW 636
           FH+FKDGTCSC DYW
Sbjct: 576 FHHFKDGTCSCGDYW 590



 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 158/399 (39%), Positives = 239/399 (59%), Gaps = 20/399 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           +H PS +  ETH I LIH+SN+  QL QIHAQI LHNLF++SR+ TQLISS+   KS+DY
Sbjct: 32  AHGPSRS-PETHFIPLIHASNTLPQLHQIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDY 90

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           ALSIF  F   NL +FN LIRGLAENS F+  +SHFV MLRLS+RP+RLT PFV KSVA+
Sbjct: 91  ALSIFRCFDHPNLFVFNALIRGLAENSRFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAA 150

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  + LGR LH  ++K G+E+D+FVRV L DMYV++G+     ++FDE+P++NK+ES+LL
Sbjct: 151 LVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILL 210

Query: 202 WNVL----------INGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLK 247
           WN +          +  C+KIG L+    +   +       N     +L+D + + G++K
Sbjct: 211 WNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIK 270

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +F +   K +++W+ MI G++ +G  ++AL  F +M  AG+  ++   ++ L+AC+
Sbjct: 271 SASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACS 330

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
             G ++ G+     +   D+ ++  +   T +VD+  + G + EA S +       D + 
Sbjct: 331 HSGNVDQGLNFFESMRL-DYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVI 389

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLA 402
           W A+      H   E A    +K++      P   VFL+
Sbjct: 390 WGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLS 428


>gi|255554062|ref|XP_002518071.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542667|gb|EEF44204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 404

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/371 (60%), Positives = 288/371 (77%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S N  ETHII LIHSS +  QL QIH QI+LHNL +SS IT QLISS+SL KSI Y+LSI
Sbjct: 30  SQNQIETHIIPLIHSSKTALQLHQIHTQILLHNLSSSSHITAQLISSSSLRKSIAYSLSI 89

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+ + PKNL++FN LIRGL +N  +   I HF+ +LR  ++P+ LT+ FV KS+ASLSL 
Sbjct: 90  FNSYHPKNLYLFNALIRGLTDNYRYLDSIDHFILLLRSDIKPDHLTFSFVLKSIASLSLK 149

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            L R LH +I++ G+E+D+FVR+ + D+YV+L + + A KVFDE+P++    S LLWNVL
Sbjct: 150 GLARALHGMILRCGLEFDSFVRISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVL 209

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           INGC K+G +RKA+ELF  MP +N ASW SLI+GF + GDL++A E F++MP K VVSWT
Sbjct: 210 INGCCKVGDMRKALELFEDMPLRNTASWNSLINGFFKIGDLEQAIEHFDRMPVKDVVSWT 269

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            M+NGFSQNG+ EKAL++F +MLD  V+ NDFT+VSALSACAK+GALEAG+R+H Y+  N
Sbjct: 270 TMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAKIGALEAGLRIHKYLKDN 329

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F L  A+G ALVDM+AKCGNI +AS VF E KEKD++TW+ MIWG AIHG +E+AIQ F
Sbjct: 330 GFRLNRAVGNALVDMHAKCGNINSASQVFKEAKEKDIITWSVMIWGWAIHGHFEEAIQCF 389

Query: 386 KKMMYSGTEPD 396
           K+MMY+G +PD
Sbjct: 390 KQMMYAGIQPD 400



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 86/188 (45%), Gaps = 43/188 (22%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEK----GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           +S++D +++  ++K A ++F++ P++      + W  +ING  + G+  KAL +F  M  
Sbjct: 172 ISMVDVYVKLEEVKLALKVFDESPQRFHEGSTLLWNVLINGCCKVGDMRKALELFEDM-- 229

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
                                       + N  S N          +L++ + K G++E 
Sbjct: 230 ---------------------------PLRNTASWN----------SLINGFFKIGDLEQ 252

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A   F     KD+++WT M+ G + +G +E+A+  F +M+    +P+    ++ L+AC  
Sbjct: 253 AIEHFDRMPVKDVVSWTTMVNGFSQNGDHEKALSVFSRMLDEDVKPNDFTIVSALSACAK 312

Query: 410 SGQVKLAL 417
            G ++  L
Sbjct: 313 IGALEAGL 320


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/671 (35%), Positives = 381/671 (56%), Gaps = 75/671 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           LI   +  K L+ IHA ++   L   + +  +++  +    + +Y+  I D     N+ +
Sbjct: 16  LIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFL 75

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           FN +IRGL  N  FQ  I  +  M +  + P+  T+PFV K+ A +    LG  +H L+V
Sbjct: 76  FNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVV 135

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K+G E DAFV++ L ++Y + G    AFKVFD+ P+KN +     W   I+G   +G  R
Sbjct: 136 KAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFAS----WTATISGYVGVGKCR 191

Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
           +A+++F      G+ P                                  +NV    +L+
Sbjct: 192 EAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALV 251

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G++++A  +F+ M EK +VSW++MI G++ NG  ++AL +FF+ML+ G++ + +
Sbjct: 252 DFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCY 311

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
            +V  L +CA++GALE G    N I+ N+F     +GTAL+DMYAKCG ++ A  VF   
Sbjct: 312 AMVGVLCSCARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGM 371

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
           ++KD + W A I GLA+ G  + A+  F +M  SG +PD   F+ +L AC ++G V+   
Sbjct: 372 RKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR 431

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS------------------ 459
            +F+SM   + + P ++H+  +V+LL R G   + +Q  ++                   
Sbjct: 432 RYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRL 491

Query: 460 ----------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
                       KL+ L+P H  +YVLLSNIYAA  +W++ A++R++M  R +KK PG+S
Sbjct: 492 HRDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYS 551

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEAL 566
           +IEV+G VH+F  G   H L+++I++KL ++    +  GY+P T+ VL +I+EE KE  +
Sbjct: 552 WIEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFI 611

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
           GCHSEKLA+AFGLI T P   I +VK L +CGDCH  +K+ S+I+ REI++RD  RFH F
Sbjct: 612 GCHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCF 671

Query: 626 KDGTCSCRDYW 636
            DG CSC+DYW
Sbjct: 672 TDGLCSCKDYW 682



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 179/358 (50%), Gaps = 44/358 (12%)

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
           ++ +   S L   + +H  +++ G++ D ++   +       G T  +F++ D+T E N 
Sbjct: 14  NRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPN- 72

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------------------- 232
              + L+N +I G       ++++E++  M K+ ++                        
Sbjct: 73  ---IFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVK 129

Query: 233 ----------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
                            +SLI+ + + G +  A ++F+ +P+K   SWTA I+G+   G+
Sbjct: 130 MHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGK 189

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
             +A+ MF ++L+ G+R + F++V  LSAC + G L +G  +  YI+ N       + TA
Sbjct: 190 CREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATA 249

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LVD Y KCGN+E A  VF    EK++++W++MI G A +G  ++A+  F KM+  G +PD
Sbjct: 250 LVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPD 309

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
               + +L +C   G ++L     + +  + F++ SV   T ++++ ++ G+  + ++
Sbjct: 310 CYAMVGVLCSCARLGALELGDWASNLINGNEFLDNSVL-GTALIDMYAKCGRMDRAWE 366


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/644 (38%), Positives = 372/644 (57%), Gaps = 41/644 (6%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
           TE   +SL++   S    +QIHA ++   L +   I  +L+   + SL  S+DYA  +F 
Sbjct: 4   TEPLCLSLLNICKSLTTFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFR 63

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLS 146
           +    ++ + N LIRGL E+   Q  +  F+ M R S  P +  ++ F+ K+ A+L  + 
Sbjct: 64  YTPNPDVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVR 123

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +G  LHC  +  G++   FV   L  MY + G    A KVFDE PE N     + WN ++
Sbjct: 124 VGIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPN----AIAWNAMV 179

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
             C + G ++   ELF +MP +N+ SW  ++ G+ + G+L+ A E+F +MP K  VSW+ 
Sbjct: 180 TACCRGGDMKGGRELFDLMPVRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWST 239

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI GF+ NG  E+A + F ++   G+R N+ ++   LSACA+ GALE G  +H +I  + 
Sbjct: 240 MIVGFAHNGYFEEAFSFFRELQRKGMRPNETSLTGVLSACAQAGALEFGKILHGFIEKSG 299

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                ++  AL+D Y+KCGN+  A LVF     E+++++WT+M+  LA+HG  E+AI  F
Sbjct: 300 LAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIF 359

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            KM  SG  PD   F+++L AC ++G V+    +FD M+  Y IEPS++H+  +V+L  R
Sbjct: 360 HKMEESGIRPDEIAFISLLYACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGR 419

Query: 446 VGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVLL 477
            GQ  + Y+                             ++    +L +L P + S +VLL
Sbjct: 420 AGQLQKAYEFVCQMPIPCTAIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLL 479

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
           SN YA  G+WKD A VR  M  + I K PGWS IEV+  ++ F AG   +K+ +E + KL
Sbjct: 480 SNAYAVAGKWKDAASVRRSMTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKL 539

Query: 536 EDIMAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           ++I+   R E GY+P    VLH+I +EEKE ++  HSEKLA+AFG+ +   G TI+IVK 
Sbjct: 540 KEIIRRLRVEGGYVPEIGRVLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKN 599

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L IC DCH++MK  S+I + EIV+RD +RFH FKDG CSCRDYW
Sbjct: 600 LRICRDCHAVMKLISQIYKVEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 21/388 (5%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           ++S  P ++ +   I+    +  S +   Q+H Q ++H L     + T LIS       +
Sbjct: 98  RNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLISMYGECGFV 157

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
            +A  +FD     N   +N ++         +     F  M    VR N +++  +    
Sbjct: 158 GFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLM---PVR-NLMSWNVMLAGY 213

Query: 140 ASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
                L L R +   + +K  V +   +     + Y +      AF  F E   K    +
Sbjct: 214 TKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFE-----EAFSFFRELQRKGMRPN 268

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFE 254
                 +++ C++ G L     L G + K  +A  VS    L+D + + G++  A  +FE
Sbjct: 269 ETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFE 328

Query: 255 Q-MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           + M E+ +VSWT+M+   + +G  E+A+ +F +M ++G+R ++   +S L AC+  G +E
Sbjct: 329 RIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVE 388

Query: 314 AGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIW 370
            G    + +    + ++ +I     +VD+Y + G ++ A   V         + W  ++ 
Sbjct: 389 QGCEYFDKMK-GMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLG 447

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
             ++HG  + A Q  +++  S  +P+ +
Sbjct: 448 ACSMHGDVKLAEQVKERL--SELDPNNS 473


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 244/664 (36%), Positives = 371/664 (55%), Gaps = 42/664 (6%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN--STKQLRQIHAQIILHNLFASSRIT 66
           L +   P       + P++ + +  ++ L  S +  S + L Q+HA ++    F    ++
Sbjct: 9   LPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHALVLRSGHFQDHYVS 68

Query: 67  TQLISS-ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
             L+   A+ H S  D+AL +F      N+ I+N++I+G  EN+     I +F   + + 
Sbjct: 69  GALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVID 127

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            RPN+ TYP + K+ +    +  GR +H  +VK G+  D  ++     MY   G+   A 
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIQMYASFGRLEDAR 187

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           K+F      +    V+ WN +I+G  K G L  A  LF  MP KN+ SW  +I+G  + G
Sbjct: 188 KMF-----YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGG 242

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           +L  A +LF++M E+  +SW++M++G+   G  ++AL +F QM     R   F + S L+
Sbjct: 243 NLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLA 302

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC+ +GA++ G  VH Y+  N   L   +GTAL+DMYAKCG ++    VF E KE+++ T
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFT 362

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI GLAIHGR E A++ F K+     +P+G   + +LTAC ++G V   L  F +MR
Sbjct: 363 WNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNS 456
             Y ++P ++H+  +V+LL R G  S+                             +  +
Sbjct: 423 EFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           +     LL+L+P++   YVLLSNIYA  GR+ DV+++R LM+ R IK  PG S +++NG 
Sbjct: 483 ERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDLNGT 542

Query: 517 VHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKL 573
           VH F+ G   H   KEI+ KL+ I    +  G+ P T  VL +I +EEKE A+  HSEKL
Sbjct: 543 VHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKL 602

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFGLI T PG  I IVK L +C DCHS  K  S+I  REI++RD  R+H+FK+GTCSC
Sbjct: 603 AIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSC 662

Query: 633 RDYW 636
           +D+W
Sbjct: 663 KDFW 666


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 270/730 (36%), Positives = 389/730 (53%), Gaps = 114/730 (15%)

Query: 15  PTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQL 69
           PT + + +  P   + + H  ++L+ +  S + L+QIH+QII   LHN  FA S++    
Sbjct: 15  PTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIE-- 72

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
             + S   ++ YAL +F+     N  I+N +IRG + +S     I  +V ML   V PN 
Sbjct: 73  FCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNS 132

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT--------- 180
            T+PF+ KS A +     G+ +H  ++K G+E D FV   L +MY Q G+          
Sbjct: 133 YTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSK 192

Query: 181 ------------------RG----AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
                             RG    A ++F+E P ++     + WN +I G ++ G   +A
Sbjct: 193 SSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD----AVSWNAMIAGYAQSGRFEEA 248

Query: 219 VELFGMMPKKNVA--------------------------SWV-------------SLIDG 239
           +  F  M + NVA                          SW+             +LID 
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + + GDL KA +LFE + EK ++SW  MI G+S     ++ALA+F +M  + V  ND T 
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETK 358
           VS L ACA +GAL+ G  +H YI     GL   ++ T+L+DMYAKCGNIEAA  VF   K
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            K L +W AMI GLA+HG    A++ F++M   G EPD   F+ +L+AC ++G V+L   
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------- 462
            F SM  DY I P ++H+  +++LL R G   +     +N   K                
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 463 ------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                       L +L+P++P +YVLLSNIYA  GRW DVAR+RT +  + +KK PG S 
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSS 608

Query: 511 IEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           IEV+  VH F  G   H+ +++I+  L++I     + G++P T  VL+++ EE KE +L 
Sbjct: 609 IEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLS 668

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLA+AFGLI T P TTI+IVK L +CG+CHS +K  SKI  REI+ RD  RFH+FK
Sbjct: 669 HHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFK 728

Query: 627 DGTCSCRDYW 636
           DG+CSC DYW
Sbjct: 729 DGSCSCMDYW 738



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 142/318 (44%), Gaps = 17/318 (5%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   A+A    +K ++   N  T   ++S    S S +    + + I  H L ++ R+  
Sbjct: 244 RFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVN 303

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI   S    +D A  +F+    K++  +NV+I G +  + ++  ++ F  M + +V P
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKV 186
           N +T+  +  + A L  L LG+ +H  I K  +   +  +   L DMY + G    A +V
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
           F       K +S+  WN +I+G +  G+   A+ELF  M  +       ++V ++     
Sbjct: 424 F----AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G ++   + F  M E   +S     +  MI+   + G  ++A A+   M +  ++ +  
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL---MKNMEMKPDGA 536

Query: 298 TVVSALSACAKVGALEAG 315
              S L AC   G +E G
Sbjct: 537 IWGSLLGACRVHGNVELG 554


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 251/701 (35%), Positives = 375/701 (53%), Gaps = 82/701 (11%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           L  A  PT     S  P N  T      ++    + + L +IHA +I   L    ++   
Sbjct: 7   LLPAKTPTAKTSISLFPENPKT-----LILEQCKTIRDLNEIHAHLIKTRLLLKPKVAEN 61

Query: 69  LISSAS--LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           L+ SA+  L  S+DYA+SIF      +   +N++IRG          I  F  M   SV+
Sbjct: 62  LLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ 121

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+  T+P + K  + L  LS G  +H LI+K G     FV+  L  MY   G+   A +V
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----------------------GM 224
           FDE  E+N    V  WN +  G +K G   + V+LF                      G 
Sbjct: 182 FDEMSERN----VRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGR 237

Query: 225 MPKKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
           +    +  W+                 SL+D + + G +  A  LF+QM  + VV+W+AM
Sbjct: 238 LADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAM 297

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I+G+SQ     +AL +F +M  A +  N+ T+VS LS+CA +GALE G  VH +I     
Sbjct: 298 ISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRM 357

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
            L   +GTAL+D YAKCG++E++  VFG+   K++L+WT +I GLA +G+ ++A++YF  
Sbjct: 358 KLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYL 417

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M+    EP+   F+ +L+AC ++G V    + F SM  D+ IEP ++H+  +V++L R G
Sbjct: 418 MLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAG 477

Query: 448 QDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSN 479
              + +Q  +N                            S  +L+ L+P H   Y+LLSN
Sbjct: 478 LIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSN 537

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLED 537
           IYA+ GRW+D  +VR  M+ + IKK PG S IE++G +H F  E   H  ++EI++ +ED
Sbjct: 538 IYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIED 597

Query: 538 IMAGAREQGYMPGT-EWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           +M   +  GY+P T E  L   +++KE ++  HSEKLA+AFGLI++ PGTTI+I K L +
Sbjct: 598 MMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRV 657

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           C DCH+  K  SK+  REIV+RD TRFH+FK+G+CSC DYW
Sbjct: 658 CTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/664 (36%), Positives = 370/664 (55%), Gaps = 42/664 (6%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN--STKQLRQIHAQIILHNLFASSRIT 66
           L +   P       + P++ + +  ++ L  S +  S + L Q+H  ++    F    ++
Sbjct: 9   LPSPFKPVDFSAEKNIPTSKLPQKTVLKLFDSKSITSLQYLTQLHGLVLRSGHFQDHYVS 68

Query: 67  TQLISS-ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
             L+   A+ H S  D+AL +F      N+ I+N++I+G  EN+     I +F   + + 
Sbjct: 69  GALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLENNKLFKAI-YFYGRMVID 127

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            RPN+ TYP + K+ +    +  GR +H  +VK G+  D  ++     MY   G+   A 
Sbjct: 128 ARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSAGIHMYASFGRLEDAR 187

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           K+F      +    V+ WN +I+G  K G L  A  LF  MP KN+ SW  +I+G  + G
Sbjct: 188 KMF-----YSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGG 242

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           +L  A +LF++M E+  +SW++M++G+   G  ++AL +F QM     R   F + S L+
Sbjct: 243 NLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLA 302

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC+ +GA++ G  VH Y+  N   L   +GTAL+DMYAKCG ++    VF E KE+++ T
Sbjct: 303 ACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFT 362

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI GLAIHGR E A++ F K+     +P+G   + +LTAC ++G V   L  F +MR
Sbjct: 363 WNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNS 456
             Y ++P ++H+  +V+LL R G  S+                             +  +
Sbjct: 423 EFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNFDLA 482

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           +     LL+L+P++   YVLLSNIYA  GR+ DV+++R LM+ R IK  PG S +++NG 
Sbjct: 483 ERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDLNGT 542

Query: 517 VHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKL 573
           VH F+   G H   KEI+ KL+ I    +  G+ P T  VL +I +EEKE A+  HSEKL
Sbjct: 543 VHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHSEKL 602

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFGLI T PG  I IVK L +C DCHS  K  S+I  REI++RD  R+H+FK+GTCSC
Sbjct: 603 AIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGTCSC 662

Query: 633 RDYW 636
           +D+W
Sbjct: 663 KDFW 666


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/641 (36%), Positives = 362/641 (56%), Gaps = 74/641 (11%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           I L    NS K L+ +HA ++   L   S +  +++  +    + +Y+  IF      N+
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNI 73

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            +FN +I GL  N  FQ  I  +  M +  + P+  T+PF+ K+ A L    LG  LH L
Sbjct: 74  FLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGL 133

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           +VK+G E DAFV   L  +Y                                    K G+
Sbjct: 134 VVKAGCESDAFVNTSLVSLY-----------------------------------GKCGF 158

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGD-------LKKAGELFEQMPEKGVVSWTAM 267
           +  A ++F  +P+KNVA+W ++I G++  G         ++A  +F+ M EK +VSW++M
Sbjct: 159 IDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGMLEKDIVSWSSM 218

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G++ NG  ++AL +FF+ML+ G R + + +V  L ACA++GALE G    N +  N+F
Sbjct: 219 IQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNWASNLMDRNEF 278

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                +GTAL+DMYAKCG +++A  VF   ++KD++ W A I GLA+ G  + A   F +
Sbjct: 279 LGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSGHVKAAFGLFGQ 338

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M  SG EPDG  F+ +L AC ++G V     +F+SM   + + P ++H+  +V+LL R G
Sbjct: 339 MEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHYGCMVDLLGRAG 398

Query: 448 QDSQGYQ---------NS-------------------QNSFTKLLQLKPKHPSSYVLLSN 479
              + +Q         N+                   +    +L+ L+P +  +YVLLSN
Sbjct: 399 FLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEPSNSGNYVLLSN 458

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLED 537
           IY+A  +W+D A++R++M  R IKK PG+S+IEV+G VH F  G   H L+++I++KL +
Sbjct: 459 IYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHPLSEKIYAKLGE 518

Query: 538 IMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           ++   +  GY+P T++VL +I +EEKE  +GCHSEKLA+AFGLI T P   I++VK L +
Sbjct: 519 LVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPNDKIRVVKNLRV 578

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CGDCH  +K+ S+ + REI++RD  RFH F DG+CSC+DYW
Sbjct: 579 CGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/646 (38%), Positives = 372/646 (57%), Gaps = 41/646 (6%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSI 85
           N T+    SL+ +  S K L+Q+HA +    L     I  +L+  S+ S+  ++DYA  +
Sbjct: 2   NHTQHLCSSLLTNCRSLKNLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRL 61

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSL 144
           F HF   ++ + N LIRGLAE+   Q+ +  FV M R    P +  ++ F+ K+ AS   
Sbjct: 62  FLHFPNPDVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRS 121

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G  LHC  +  G++   FV   L  MY + G    A KVF+E  E N    V+ WN 
Sbjct: 122 LESGIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPN----VVAWNA 177

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
           ++  C + G ++ A  +F  MP +N+ SW  ++ G+ + G+L+ A +LF +MP K  VSW
Sbjct: 178 VVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSW 237

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           + MI GF+ NG   +A   F ++   G+R N+ ++  ALSACA  GA+E G  +H +I  
Sbjct: 238 STMIVGFAHNGFFYEAFGFFRELQQVGMRPNEVSLTGALSACADAGAIEFGKILHGFIEK 297

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQ 383
           + F    ++  AL+D Y+KCGN+  A LVF    EK  +++WT+MI GLA+HG  E+AIQ
Sbjct: 298 SGFLWMVSVNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQ 357

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F +M  SG  PDG  F++IL AC ++G ++    +F  M+  Y IEP+++H+  +V+L 
Sbjct: 358 LFHEMEESGIRPDGIAFISILYACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLY 417

Query: 444 SRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYV 475
            R GQ  + Y+                             ++    +L +L P +   +V
Sbjct: 418 GRAGQLDKAYEFIIHMPVLPTAIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHV 477

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHS 533
           LLSNIYA  G+WKDVA VR  M  + + K PGWS IEV+  ++ F AG   + + +E + 
Sbjct: 478 LLSNIYAVAGKWKDVAAVRRSMTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYE 537

Query: 534 KLEDIMAGAREQG-YMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
           KL++IM   R +G Y+P    VLH+I+ EEKE+++  HSEKLA+AFG+ +   G+ I+IV
Sbjct: 538 KLKEIMLKLRVEGCYIPEVGSVLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIV 597

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +C DCH++MK  SK+   EIV+RD +RFH FK G+CSCRDYW
Sbjct: 598 KNLRVCRDCHTVMKLISKVYGLEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 248/643 (38%), Positives = 372/643 (57%), Gaps = 42/643 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNL--FASSRITTQLISSASLHKSIDYALS 84
           N+    H++    +  S +QL +I AQII   +     + I  + I  +S H ++ +++ 
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79

Query: 85  IFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS--KSVAS 141
           IF+HF    N+  +N L++  ++++ + + IS+F   L L   PN   Y F S  K+ A 
Sbjct: 80  IFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAG 139

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L+ +  G+ +HC + K G E + FVR  L D+Y ++G    A K+FDE   ++    V+ 
Sbjct: 140 LAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRD----VVS 195

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           WN LI+G    G + KA  +F  M +KN+ SW ++I G+ R G+L++A +LFE MP + V
Sbjct: 196 WNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNV 255

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VSW AMI G++QN +   A+ +F QM  + G+  ND T+VS LSACA +GAL+ G  +H 
Sbjct: 256 VSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 315

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           +I  N   +   +G AL DMYAKCG +  A  VF E  E+D+++W+ +I GLA++G   +
Sbjct: 316 FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 375

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A  +F +M+  G EP+   F+ +LTAC ++G V   L +FD M   Y I P ++H+  VV
Sbjct: 376 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 435

Query: 441 NLLSRVGQDSQG-------------------------YQNSQNS---FTKLLQLKPKHPS 472
           +LLSR G+  Q                          Y++++       ++L+L   H  
Sbjct: 436 DLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSG 495

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           S V L+N+YA+ GR  D A  R  M+     K PG S+IE+N  V+ F  G   H  +  
Sbjct: 496 SLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLR 555

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I+S + ++    +  GY P T+ V+HNI +EEKE+AL  HSEKLALAFGLI T+ GTTI+
Sbjct: 556 IYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIR 615

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           IVK L +C DCH  +K  SKI +REIV+RD +RFH+FKDG CS
Sbjct: 616 IVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/645 (37%), Positives = 367/645 (56%), Gaps = 40/645 (6%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSI 85
           N  E H ++L     S + ++QI A I    L +   ++ +L+   + +L  S+ YA  +
Sbjct: 2   NSRELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRL 61

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSL 144
           F      ++ ++N LIRGL+++    + +  FV M R SV  P+  ++ F+ K+ A+   
Sbjct: 62  FLDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRA 121

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L+ G  LHCL V  G++   FV   L  MY +      A KVFDE  E N    ++ WN 
Sbjct: 122 LTNGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPN----IVAWNA 177

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
           ++  C +   ++ A ++F  MP +N+ SW  ++ G+ + G+L+ A E+F +MP K  VSW
Sbjct: 178 IVAACFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSW 237

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           + MI GF+ NG    A A F ++   G+R N+ ++   LSACA+ GA E G  +H ++  
Sbjct: 238 STMIVGFAHNGNFNDAFAFFREVRREGMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEK 297

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           + F    ++  AL+D Y+KCGN++ A LVF     +  ++WTAMI G+A+HG  E+AI+ 
Sbjct: 298 SGFLQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRL 357

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M  S  +PD   F++IL AC ++G V L  ++F  M   Y IEP ++H+  +V+L  
Sbjct: 358 FNEMEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYG 417

Query: 445 RVGQDSQGYQN------SQNSFT----------------------KLLQLKPKHPSSYVL 476
           R G+  Q Y        S N                         +L +L P++   +VL
Sbjct: 418 RAGKLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVL 477

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSK 534
           LSNIYA  G+WKDVA +R  M  + +KK PGWS IEVN  ++ F AG   + +A E H K
Sbjct: 478 LSNIYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQK 537

Query: 535 LEDIMAGAR-EQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
           L +IM+  R E GY+P    VLH+I+ EEKE+++  HSEKLA+AFG+ +   G  I++VK
Sbjct: 538 LREIMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVK 597

Query: 593 KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L IC DCH++MK  SK+ + EIV+RD +RFH F  G+CSCRDYW
Sbjct: 598 NLRICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 4/190 (2%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N ++ T ++S    + + +  R +H  +          +   LI + S   ++D A  +F
Sbjct: 268 NEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMARLVF 327

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D+   ++   +  +I G+A + + +  I  F  M   +++P+ +T+  +  + +   L+ 
Sbjct: 328 DNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLVD 387

Query: 147 LGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           LG      +V + G+E        + D+Y + GK + A+    + P    S + ++W  L
Sbjct: 388 LGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMP---ISPNDIVWRTL 444

Query: 206 INGCSKIGYL 215
           +  CS  G L
Sbjct: 445 LGACSIHGNL 454


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 264/720 (36%), Positives = 381/720 (52%), Gaps = 104/720 (14%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHN-LFASSRITTQLISSAS 74
           + SS  P   + E   + L+    S +  +QIHA II   LHN LFA S++     S+ S
Sbjct: 17  LPSSDPPYRVLQEHPSLKLLSKCQSIRTFKQIHAHIIKTGLHNTLFALSKLIE--FSAVS 74

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
               I YA+S+F+     NL I+N +IRGL+ +      +  FV M+   V PN  T+PF
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP--- 191
           + KS A L+    G+ +H  ++K G   D F+   L +MY Q G+   A  VFD++    
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 192 ------------------------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
                                   ++   + V+ WN +I G +++G  ++A+ LF  M K
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 228 KNVA--------------------------SWV-------------SLIDGFMRKGDLKK 248
            NV                           SW+             +LID + + GDL+ 
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ELF+ M E+ V+SW  MI G++     ++ALA+F +ML +GV   + T +S L +CA 
Sbjct: 315 ARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAH 374

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GA++ G  +H YI+ N   +  ++ T+L+D+YAKCGNI AA  VF   K K L +W AM
Sbjct: 375 LGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAM 434

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I GLA+HG+ ++A + F KM   G EP+   F+ IL+AC ++G V L   FF SM  DY 
Sbjct: 435 ICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYK 494

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-------------------------- 462
           I P  +H+  +++LL R G   +     QN   K                          
Sbjct: 495 ISPKSQHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVA 554

Query: 463 --LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
             L +L+P +P +YVLLSNIYA  G+W DVAR+RT +  R +KK PG + IEV+  VH F
Sbjct: 555 ERLFELEPDNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEF 614

Query: 521 EAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAF 577
             G   H  +++I+  LE++    +  G++  T  VL+++ EE KE AL  HSEKLA+AF
Sbjct: 615 LVGDKVHPQSEDIYRMLEEVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAF 674

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GLI T PGT I+I+K L +C +CHS  K  SKI  REI+ RD  RFH+FKDG+CSC DYW
Sbjct: 675 GLISTKPGTPIRIIKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 134/317 (42%), Gaps = 16/317 (5%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   A+    +++ ++ P N  T   ++S    SN+      + + I    L ++ ++  
Sbjct: 241 RSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVN 300

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI   S    +  A  +FD    +++  +NV+I G      ++  ++ F  ML   V P
Sbjct: 301 ALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
             +T+  +  S A L  + LG+ +H  I K+       +   L D+Y + G    A +VF
Sbjct: 361 TEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVF 420

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRK 243
           D      K +S+  WN +I G +  G   KA ELF  M     + N  ++V ++      
Sbjct: 421 DGM----KIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHA 476

Query: 244 GDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G +    + F  M +   +S     +  MI+   + G  E+A ++   M    V+ +   
Sbjct: 477 GLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLLQNM---EVKPDGAI 533

Query: 299 VVSALSACAKVGALEAG 315
             S L AC   G +E G
Sbjct: 534 WGSLLGACRDHGRVELG 550


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/695 (36%), Positives = 377/695 (54%), Gaps = 76/695 (10%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILH-NLFASSRIT 66
           +L ++++ T N   ++ PSN      I+SL +   + + L+Q+HAQII H N        
Sbjct: 78  KLQSSMSRTPN-PLTNPPSN----PQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSAL 132

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             L + +     + YA +IF H       ++N LIR L+ +      +  +  ML+  ++
Sbjct: 133 ASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLK 192

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK- 185
           P+ +TYPFV K+    S+   G  +H  +VKSG E D+++   L  +Y   GK  GA K 
Sbjct: 193 PDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYAN-GKDLGAAKQ 251

Query: 186 -------------------------------VFDETPEKNKSESVLLWNVLINGCSKIGY 214
                                          VFD    +     V+ WN +ING + +G 
Sbjct: 252 LFNLCSARDVVSWNAMIDGYVKHVEMGHARMVFD----RMVCRDVISWNTMINGYAIVGK 307

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           + +A  LF  MP++N+ SW S++ GF++ G+++ A  LF +MP + VVSW +M+  ++Q 
Sbjct: 308 IDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQC 367

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G+  +ALA+F QM   GV+  + TVVS LSACA +GAL+ G+ +H YI+ N   +   +G
Sbjct: 368 GKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVG 427

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TALVDMYAKCG I  A+ VF   + KD+L W  +I G+AIHG  ++A Q FK+M  +G E
Sbjct: 428 TALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVE 487

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-- 452
           P+   F+AIL+AC ++G V       D M   Y IEP V+H+  V++LL+R G   +   
Sbjct: 488 PNDITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAME 547

Query: 453 --------------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                                     ++  +    +L+ L+P H   Y+LLSNIYAA  +
Sbjct: 548 LIGTMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKK 607

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           W D  +VR LM+   I K PG S IE+ G VHRF AG   H  + +I+ KL +I    + 
Sbjct: 608 WDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKS 667

Query: 545 Q-GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
             GY   T  VL +++EE KE AL  HSEKLA+A+GL+       I+IVK L +C DCH 
Sbjct: 668 AIGYSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHH 727

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++K  SK+  REI++RD  RFH+F+DG CSC D+W
Sbjct: 728 VIKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 762


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/628 (36%), Positives = 352/628 (56%), Gaps = 75/628 (11%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           +Y   +F      N+ ++N +IRGL  N  F   I  +  M      PN  T+PFV K+ 
Sbjct: 63  NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L  L LG  +H L+VK G + D FV+  L  +Y + G    A KVFD+ P+KN    V
Sbjct: 123 ARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN----V 178

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------SWV--- 234
           + W  +I+G   +G  R+A+++F  + + N+A                       W+   
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238

Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                         SL+D + + G+++KA  +F+ MPEK +VSW AMI G++ NG  ++A
Sbjct: 239 IMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEA 298

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           + +F QM    V+ + +TVV  LSACA++GALE G  V   +  N+F     +GTAL+D+
Sbjct: 299 IDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLGTALIDL 358

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAKCG++  A  VF   KEKD + W A+I GLA++G  + +   F ++   G +PDG  F
Sbjct: 359 YAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTF 418

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-- 458
           + +L  C ++G V     +F+SM   + + PS++H+  +V+LL R G   + +Q  +N  
Sbjct: 419 IGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMP 478

Query: 459 --------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                     +  +L++L+P +  +YVLLSNIY+A  +W + A+
Sbjct: 479 MEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAK 538

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPG 550
           VR  M  + I+K PG S+IEV+G VH F  G   H L+++I++KL+++    +  GY+P 
Sbjct: 539 VRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPT 598

Query: 551 TEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
           T++VL +I +EEKE  LGCHSEKLA+AFGLI  TP   I++VK L +CGDCH  +K  S 
Sbjct: 599 TDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISS 658

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I+ REI +RD  RFH F++G+CSC DYW
Sbjct: 659 ITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/639 (36%), Positives = 362/639 (56%), Gaps = 41/639 (6%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
           +SL+   +S K  +QIHAQI    L     +  +L+   + ++  ++ YAL +F HF   
Sbjct: 6   VSLLSKCSSLKPTKQIHAQICKTGLHTDPLVFGKLLLHCAITISDALHYALRLFHHFPNP 65

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +  + N LIR L+ +    S +  F+ + R  ++ P+  T+ F  K+VA+   L  G  L
Sbjct: 66  DTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQL 125

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H    + G +   FV   L  MY + G +  A +VFDE  E N    V+ WN ++    +
Sbjct: 126 HSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPN----VVTWNAVLTAAFR 181

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
            G +  A ++FG MP +N+ SW  ++ G+ + G+L  A  +F +MP +  VSW+ MI GF
Sbjct: 182 CGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGF 241

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           + NG  ++A   F ++L   +R N+ ++   LSACA+ GA E G  +H ++    F   G
Sbjct: 242 AHNGCFDEAFGFFRELLREEIRTNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVG 301

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
           ++  AL+D Y+KCGN+  A LVF      + +++WT++I GLA+HG  E+AIQ F +M  
Sbjct: 302 SVNNALIDTYSKCGNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE 361

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           SG  PDG  F+++L AC +SG V+     F  M+  Y IEP+++H+  +V+L  R  +  
Sbjct: 362 SGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQ 421

Query: 451 QGYQ------NSQNSF----------------------TKLLQLKPKHPSSYVLLSNIYA 482
           + Y+       S N+                        +L ++ P +   +VLLSN+YA
Sbjct: 422 KAYEFICEMPVSPNAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYA 481

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
             G+WKDV+ +R  M   S+KK PGWS IE++  ++ F AG   +++ +E H KL +IM 
Sbjct: 482 VAGKWKDVSSIRRTMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIML 541

Query: 541 GAR-EQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
             R E GY P    VLH+I+EE KE+++  HSEKLA AFG+ +   G  ++IVK L +CG
Sbjct: 542 RLRTEAGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCG 601

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCH++MK  SK+ Q EI++RD +RFH FKDG CSCRDYW
Sbjct: 602 DCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCRDYW 640


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 260/723 (35%), Positives = 384/723 (53%), Gaps = 111/723 (15%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
           SS  P ++I     +SL+H+  + + LR IHAQ+I   LHN  +A S++    I S    
Sbjct: 23  SSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGLHNTNYALSKLIEFCILSPHF- 81

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           + + YA+S+F      NL I+N + RG A +S   S +  +V M+ L + PN  T+PFV 
Sbjct: 82  EGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFVL 141

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
           KS A       G+ +H  ++K G + D +V   L  MYVQ G+   A KVFD++P ++  
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVV 201

Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
                                      + V+ WN +I+G ++ G  ++A+ELF  M K N
Sbjct: 202 SYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN 261

Query: 230 VAS--------------------------WV-------------SLIDGFMRKGDLKKAG 250
           V                            W+             +LID + + G+L+ A 
Sbjct: 262 VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETAC 321

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LFE++P K V+SW  +I G++     ++AL +F +ML +G   ND T++S L ACA +G
Sbjct: 322 GLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLG 381

Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           A++ G  +H YI   D  LKG     ++ T+L+DMYAKCG+IEAA  VF     K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI+G A+HGR + +   F +M   G +PD   F+ +L+AC +SG + L  + F +M  
Sbjct: 439 NAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQ 498

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQ---------------------------DSQGYQNSQN 458
           DY + P ++H+  +++LL   G                               G      
Sbjct: 499 DYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGE 558

Query: 459 SFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
           SF + L++++P++P SYVLLSNIYA+ GRW +VA+ R L+  + +KK PG S IE++  V
Sbjct: 559 SFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F  G   H   +EI+  LE++     + G++P T  VL  ++EE KE AL  HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           +AFGLI T PGT + IVK L +C +CH   K  SKI +REI+ RD TRFH+F+DG CSC 
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738

Query: 634 DYW 636
           DYW
Sbjct: 739 DYW 741


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/657 (36%), Positives = 370/657 (56%), Gaps = 40/657 (6%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTK--QLRQIHAQIILHNLFASSRITTQLISS- 72
           + +  + +K ++ +++  I+ L+++ +ST    L+Q+HA  +    F    ++  L+   
Sbjct: 13  SKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCY 72

Query: 73  ASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           A+ H S +++AL +F++    N+ +FN++I+G  +N+     I  +  M+    RPN+ T
Sbjct: 73  ANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFT 132

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           YP + K+  +      G  +H  ++K G+  D  +R     MY   G+  GA ++  E  
Sbjct: 133 YPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGE-- 190

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
             + +  V+ +N +I+G  K G +  A ELF  M  KNV SW  ++ G  + G +++A E
Sbjct: 191 --DGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARE 248

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF +M EK  +SW+AMI+G+ + G  ++AL +F  M    +R   F + S L+ACA +GA
Sbjct: 249 LFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGA 308

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           L+ G  +H Y++ N       +GTALVDMYAKCG ++ A  VF + ++K++ TW AMI G
Sbjct: 309 LDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICG 368

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           L +HGR E AI+ F KM      P+G   L +L+AC +SG V   L  F+SM   Y IEP
Sbjct: 369 LGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVYGIEP 428

Query: 432 SVKHHTVVVNLLSRVG----------------------------QDSQGYQNSQNSFTKL 463
            ++H+  VV+LL R G                            +     +  +     L
Sbjct: 429 GMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKIL 488

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA- 522
           L+L+P++   Y LLSNIYA  GRW DVA VR LM+ R +K   G S I+ +G VH F+  
Sbjct: 489 LELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMG 548

Query: 523 -GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLI 580
            G H   K I+  L++++   + +G+ P T  VL +I +EEKE  L  HSEKLA+AFGLI
Sbjct: 549 DGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEKLAIAFGLI 608

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            T PGTTI +VK L +C DCHS  K  S++  REI++RD  R+H+FK GTCSC+D+W
Sbjct: 609 NTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW 665


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 254/723 (35%), Positives = 378/723 (52%), Gaps = 102/723 (14%)

Query: 14  APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           A T +   +H PS  + +T  +SLI +  S  QL+QIH+Q I   L ++  +  Q+I+  
Sbjct: 4   ATTLSPPPTHLPS--LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC 61

Query: 74  SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             H+   ++YA  +FD     N  ++N +I+G +      S +S +  ML   V P+  T
Sbjct: 62  CKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYT 121

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR---VHLADMYVQLGKTRGAF---- 184
           YPF+ K     + +  GR LH  IVK G   + FV+   +HL  +  ++   RG F    
Sbjct: 122 YPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSS 181

Query: 185 ------------------------KVFDET------PEKNKSESVL-------------- 200
                                   K+FDE       P      SVL              
Sbjct: 182 KGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKR 241

Query: 201 ---------------LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
                          L N LI+  +  G +  A+ +F  M  ++V SW +++ GF   G 
Sbjct: 242 VHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQ 301

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           +  A   F++MPE+  VSWTAMI+G+ Q    ++ L++F +M  A ++ ++FT+VS L+A
Sbjct: 302 VGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTA 361

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA +GALE G  +  YI  N+  +   +G AL+DMY  CGN+E A  +F     +D ++W
Sbjct: 362 CAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISW 421

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           TA+I+GLAI+G  E+A+  F +M+ +   PD    + +L AC +SG V     FF  M  
Sbjct: 422 TAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTT 481

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------------------- 462
            + IEP+V H+  +V+LL R G   + ++  +N   K                       
Sbjct: 482 QHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAE 541

Query: 463 -----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
                +L+L+P++ + YVLL NIYAA  RW+ +  VR LM  R IKK PG S IE+NG V
Sbjct: 542 MAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSV 601

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLA 574
           H F AG   H  +KEI+SKL+++    +  GY P T  V  +I +EEKE A+  HSEKLA
Sbjct: 602 HEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLA 661

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           +AFGLI + PG TI+IVK L +C DCH + K  SK+  RE+++RD TRFH+F+ G+CSC+
Sbjct: 662 IAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCK 721

Query: 634 DYW 636
           DYW
Sbjct: 722 DYW 724


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 260/723 (35%), Positives = 382/723 (52%), Gaps = 111/723 (15%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLH 76
           SS  P +++     +SL+H+  + + LR IHAQ+I   LHN  +A S++    + S    
Sbjct: 23  SSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLLELCVISPHF- 81

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
             + YA+S+F+     NL I+N + RG A +S   S +  +V M+ L + PN  T+PF+ 
Sbjct: 82  DGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLL 141

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
           KS A       G+ +H  ++K G + D FV   L  +YVQ G+   A KVFD +P ++  
Sbjct: 142 KSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVV 201

Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
                                      + V+ WN +I+G ++ G  ++A+ELF  M K N
Sbjct: 202 SYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN 261

Query: 230 --------------------------VASWV-------------SLIDGFMRKGDLKKAG 250
                                     V SW+             SL+D + + G+L+ A 
Sbjct: 262 IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETAC 321

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LFE +  K V+SW  +I G++     ++AL +F +ML +G R ND T++S L ACA +G
Sbjct: 322 GLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLG 381

Query: 311 ALEAGVRVHNYISCNDFGLKGA-----IGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           A++ G  +H YI   D  LK A     + T+L+DMYAKCG+IEAA  VF     K L +W
Sbjct: 382 AIDIGRWIHVYI---DKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSW 438

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI+G A+HGR + A   F +M   G EPD   F+ +L+AC  SG + L  + F +M  
Sbjct: 439 NAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFRTMTQ 498

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------------------- 458
           DY I P ++H+  +++LL   G   +  +   N                           
Sbjct: 499 DYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIRGNVELGE 558

Query: 459 SFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
           SF + L++++P++P  YVLLSNIYA  GRW +VA++R L+  + +KK PG S IE++  V
Sbjct: 559 SFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVV 618

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F  G   H   +EI+  LE++     + G++P T  VL  ++EE KE AL  HSEKLA
Sbjct: 619 HEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 678

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           +AFGLI T PGT + IVK L +C +CH   K  SKI +REI+ RD TRFH+F+DG CSC 
Sbjct: 679 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCN 738

Query: 634 DYW 636
           DYW
Sbjct: 739 DYW 741


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/640 (37%), Positives = 346/640 (54%), Gaps = 71/640 (11%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           I+   +  LI  S +   L QIHA +  H L     +  +L  S +    +DY++++F  
Sbjct: 28  ISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGR 87

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
               ++  +  +I G A     +  ++ +  ML   V PN  T+     S+  L  +  G
Sbjct: 88  TQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF----SSILKLCPIEPG 143

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + LH   VK G + D +VR  L D+Y + G    A ++FD                    
Sbjct: 144 KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD-------------------- 183

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                           MP+K++ S  +++  + + G+L  A  LF+ M E+  V W  MI
Sbjct: 184 ---------------TMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMI 228

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           +G++QNG   +AL +F +ML A  + N+ TV+S LSAC ++GALE+G  VH+YI  N   
Sbjct: 229 DGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ 288

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +GTALVDMY+KCG++E A LVF +  +KD++ W +MI G A+HG  ++A+Q FK M
Sbjct: 289 FNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSM 348

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  P    F+ IL+AC +SG V    + F+ M+ +Y IEP ++H+  +VNLL R G 
Sbjct: 349 CRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGH 408

Query: 449 DSQGYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNI 480
             Q Y+  +N   +                            L+     +  +Y+LLSNI
Sbjct: 409 VEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNI 468

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDI 538
           YAA G W  VAR+RT+M+   +KK+PG S IEVN  VH F AGG  H   KEI+  LE+I
Sbjct: 469 YAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEI 528

Query: 539 MAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
               +  GY P T+ VLH+I E EKE +L  HSEKLA+AFGLI T PGTTIKIVK L +C
Sbjct: 529 NGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVC 588

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH + K  SKI+ R+IV+RD  RFH+F +G+CSC DYW
Sbjct: 589 ADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/633 (37%), Positives = 354/633 (55%), Gaps = 71/633 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           SLI  S S   L QIHA ++   L+ +  +  +L  S +    +D ++ +F+ F   N+ 
Sbjct: 52  SLIDKSKSVAHLLQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVF 111

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            F+ +I    ++  F     ++  ML   V PN  T+  V KS +    L  G+ LHC  
Sbjct: 112 SFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCS----LESGKVLHCQA 167

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           +K G+  D +VR  L D+Y + G    A ++FD+                          
Sbjct: 168 IKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDK-------------------------- 201

Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                    MP++++ S  +++  + + G+L KA  LFE M E+ VV W  MI G++Q+G
Sbjct: 202 ---------MPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSG 252

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
              ++L +F +ML A    N+ TV++ LSAC ++GALE+G  +H+YI      +   +GT
Sbjct: 253 VPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQINVHVGT 312

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+DMY+KCG++E A LVF   ++KD++ W +MI G A+HG  + A+Q F++M  +G +P
Sbjct: 313 ALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKP 372

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
               F+ IL+AC + G V+   +FF  MR  Y IEP ++H+  +VNLL R G   + Y  
Sbjct: 373 TDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGL 432

Query: 456 SQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAAEGRW 487
            +N                                L+  K  +  +YVLLSN+YAA G W
Sbjct: 433 VKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLSNMYAATGNW 492

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
           + VA++RTLM+   I+K+ G S IEV+  VH F AG   H  +KEI+  L +I +  + +
Sbjct: 493 EGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLNEINSWLKAR 552

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P T+ VLH+++EE KE++L  HSEKLA+AFGLI T PGTT+KIVK L +C DCH++M
Sbjct: 553 GYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLRVCSDCHTVM 612

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  S+I+ R+IV+RD  RFH+F+DG CSC DYW
Sbjct: 613 KMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 362/660 (54%), Gaps = 51/660 (7%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--- 72
           T   K SHK   ++  T   + +H       L+Q HA I+       S I   L+ S   
Sbjct: 25  TETSKLSHKAILHLLNTQCTTSLH------HLKQAHALILRTGHLQDSYIAGSLVKSYAN 78

Query: 73  --ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
              + + S + +L +FD     N+ ++N +I+   EN+     I  +  M+    RPN+ 
Sbjct: 79  VSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKY 138

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TYP V K+ +   +++ G  +H  +VK G+  D  +      MY   G+   A ++ D+ 
Sbjct: 139 TYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD- 197

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSLIDGFMRKGDLKKA 249
             K      + WN +I+G  + G +  A ELF  MP ++ +++W ++I GF R G ++ A
Sbjct: 198 --KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVA 255

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            E F++M E+  +SW+AMI+G+ Q G   +AL +F QM    +R   F + S LSACA +
Sbjct: 256 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 315

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           GAL+ G  +H Y   N   L G +GT+LVDMYAKCG I+ A  VF +   K++ +W AMI
Sbjct: 316 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 375

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            GLA+HGR E AI  F KM      P+   F+ +L AC + G V+  L  F+SMR +Y +
Sbjct: 376 GGLAMHGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGV 432

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK--------------------------- 462
           EP ++H+  +V+LL R G  ++  +   +  T+                           
Sbjct: 433 EPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGK 492

Query: 463 -LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN-GHVHRF 520
            LL+L+P++   Y LLSNIYA  GRW++V  VR LM+ R IK  PG S I++  G VH+F
Sbjct: 493 ILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKF 552

Query: 521 --EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAF 577
               G H   K+I+  L+ +    + +GY P    VL +I +EEKE A+  HSEKLA+ F
Sbjct: 553 IIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGF 612

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GLI T+PGTTI+IVK L +C DCHS  K  S++  REI++RD  R+H+F++G CSC+D+W
Sbjct: 613 GLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 363/645 (56%), Gaps = 52/645 (8%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YAL 83
           S+ +TE   +SL  +  S   L+QIH++ I   +  +  I  +++S     +  D  YA 
Sbjct: 9   SSPVTENPPLSLFETCKSMYHLKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYAR 68

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD     ++  +N++ +G +  +  +  +S ++ ML  +V+P+  TYPF+ K      
Sbjct: 69  QLFDTIPEPSVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFTRSV 128

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LGR LHC +VK G++ + F    L +MY   G    A  +FD + + +    V+ WN
Sbjct: 129 ALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSD----VVTWN 184

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
            +I+G ++I              KK+V SW +++ GF+  G +  A + F +MPE+  VS
Sbjct: 185 AMISGYNRI--------------KKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVS 230

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           WTAMI+G+ +    ++AL +F +M  + ++ ++FT+VS L+ACA++GALE G  +  YI 
Sbjct: 231 WTAMIDGYLRLNCYKEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYID 290

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            N       +G AL+DMY KCGN+E A  +F    ++D  TWTAM+ GLAI+G  E+A+ 
Sbjct: 291 KNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALN 350

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F +M+ +   PD   ++ +L+AC ++G V     FF SM   + IEP++ H+  +V+LL
Sbjct: 351 MFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLL 410

Query: 444 SRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYV 475
            + G   + ++  +N                            +  ++L+L+P + + YV
Sbjct: 411 GKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYV 470

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHS 533
           L  NIYAA  +W  +  +R +M  R IKK PG S IE+NG VH F AG   H   KEI+ 
Sbjct: 471 LQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYG 530

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
           KL  + +  +  GY P T  V  +I EE KE A+  HSEKLA+AFGLI + PG TI+IVK
Sbjct: 531 KLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVK 590

Query: 593 KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L +C DCH + K  SK+  RE+++RD TRFH+F+ G+CSC+DYW
Sbjct: 591 NLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 241/660 (36%), Positives = 362/660 (54%), Gaps = 51/660 (7%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--- 72
           T   K SHK   ++  T   + +H       L+Q HA I+       S I   L+ S   
Sbjct: 26  TETSKLSHKAILHLLNTQCTTSLH------HLKQAHALILRTGHLQDSYIAGSLVKSYAN 79

Query: 73  --ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
              + + S + +L +FD     N+ ++N +I+   EN+     I  +  M+    RPN+ 
Sbjct: 80  VSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKY 139

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TYP V K+ +   +++ G  +H  +VK G+  D  +      MY   G+   A ++ D+ 
Sbjct: 140 TYPAVLKACSDSGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDD- 198

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSLIDGFMRKGDLKKA 249
             K      + WN +I+G  + G +  A ELF  MP ++ +++W ++I GF R G ++ A
Sbjct: 199 --KGGEVDAVCWNAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVA 256

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            E F++M E+  +SW+AMI+G+ Q G   +AL +F QM    +R   F + S LSACA +
Sbjct: 257 REFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANL 316

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           GAL+ G  +H Y   N   L G +GT+LVDMYAKCG I+ A  VF +   K++ +W AMI
Sbjct: 317 GALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMI 376

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            GLA+HGR E AI  F KM      P+   F+ +L AC + G V+  L  F+SMR +Y +
Sbjct: 377 GGLAMHGRAEDAIDLFSKM---DIYPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGV 433

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK--------------------------- 462
           EP ++H+  +V+LL R G  ++  +   +  T+                           
Sbjct: 434 EPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGK 493

Query: 463 -LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN-GHVHRF 520
            LL+L+P++   Y LLSNIYA  GRW++V  VR LM+ R IK  PG S I++  G VH+F
Sbjct: 494 ILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKF 553

Query: 521 --EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAF 577
               G H   K+I+  L+ +    + +GY P    VL +I +EEKE A+  HSEKLA+ F
Sbjct: 554 IIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGF 613

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GLI T+PGTTI+IVK L +C DCHS  K  S++  REI++RD  R+H+F++G CSC+D+W
Sbjct: 614 GLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 251/722 (34%), Positives = 375/722 (51%), Gaps = 108/722 (14%)

Query: 21  SSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASL 75
           S   P   +   H  ++L+ +  + + L+QIH+QII   LHN  FA S++      + S 
Sbjct: 17  SDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIE--FCAVSP 74

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
           H  + YALS+F      N  I+N +IRGL+ +      + ++V M+     PN  T+P +
Sbjct: 75  HGDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSI 134

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN- 194
            KS   +     G+ +H  ++K G+E++AFV   L +MY Q G+   A  VFD++  ++ 
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194

Query: 195 --------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
                                         V+ WN +I+G ++ G + +A+  F  M + 
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254

Query: 229 NVA---------------------------SWVS-------------LIDGFMRKGDLKK 248
            V                            SW+              LID +++ GDL++
Sbjct: 255 KVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEE 314

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  LFE++ +K VVSW  MI G++     ++AL +F +M+ + +  ND T +S L ACA 
Sbjct: 315 ASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 309 VGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           +GAL+ G  VH Y+  N   +K   A+ T+L+DMYAKCG++  A  +F     K L TW 
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWN 434

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI G A+HG  + A+  F +M   G  PD   F+ +LTAC ++G + L   +F SM  D
Sbjct: 435 AMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQD 494

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------------ 462
           Y + P + H+  +++L  R G   +     +N   K                        
Sbjct: 495 YKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAES 554

Query: 463 ----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
               L +L+P++PS+YVLLSNIYA  GRW+DVA++RT +    +KK PG S IEV+  VH
Sbjct: 555 VAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVH 614

Query: 519 RFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLAL 575
            F  G   H  + EI+  L++I     + G++P T  VL+++ EE KE  L  HSEKLA+
Sbjct: 615 EFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAI 674

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGLI T PGTTI+I+K L +CG+CHS  K  SKI  REI+ RD  RFH+FKDG+CSC+D
Sbjct: 675 AFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCKD 734

Query: 635 YW 636
           YW
Sbjct: 735 YW 736



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 165/404 (40%), Gaps = 70/404 (17%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQ-IHAQIILHNLFASSRIT 66
           R+  A+A    ++ +    N  T   ++S    S S+ QL   + + I    L ++ R+ 
Sbjct: 240 RVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLV 299

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             LI        ++ A ++F+    KN+  +NV+I G    S ++  +  F  M++ ++ 
Sbjct: 300 NGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNID 359

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           PN +T+  +  + A+L  L LG+ +H           A+V  ++  M             
Sbjct: 360 PNDVTFLSILPACANLGALDLGKWVH-----------AYVDKNMKSM------------- 395

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
                 KN   +V LW  LI+  +K G L  A  +F  M  K++A+W ++I GF      
Sbjct: 396 ------KN---TVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGF------ 440

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
                                    + +G  + AL +F +M   G   +D T V  L+AC
Sbjct: 441 -------------------------AMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTAC 475

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLL 363
              G L  G R  + +   D+ +   +     ++D++ + G   EA +LV     + D  
Sbjct: 476 KHAGLLSLGRRYFSSM-IQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGA 534

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDGTVFLAILTA 406
            W +++    IH R E A    K +     E P   V L+ + A
Sbjct: 535 IWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYA 578


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/726 (34%), Positives = 386/726 (53%), Gaps = 104/726 (14%)

Query: 15  PTTNIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           PT N  S    ++     H  +SLI   + TKQL+QIHAQ++   LF      ++LI++A
Sbjct: 18  PTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 74  SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRL 130
           +L    S+DYA  +FD     NL+ +N LIR  A +S+    +  F+ ML  S   P++ 
Sbjct: 78  ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKS----------------------GVEYDAFVRV 168
           T+PF+ K+ + L  L  G+  H +++K                       G+ Y  FV +
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 169 HLADM---------YVQLGKTRGAFKVFDETP---------------------------- 191
              D+         +VQ G    A ++F E                              
Sbjct: 198 PRRDVVSWNSMITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGR 257

Query: 192 ------EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
                 E+N+  ES+ L N +++  +K G +  A  LF  MP+K++ SW +++ G+ + G
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSAL 303
           +   A  +F+ MP + + +W A+I+ + Q G+ ++AL +F ++ L    + ++ T+VS L
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SACA++GA++ G  +H YI      L   + T+L+DMY KCG+++ A +VF   + KD+ 
Sbjct: 378 SACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVF 437

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            W+AMI GLA+HG  + AI  F KM     +P+   F  IL AC + G V+    FF+ M
Sbjct: 438 VWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQM 497

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN--- 455
              Y + P VKH+  +V++L R G   +                          ++N   
Sbjct: 498 ELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVL 557

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
           ++ + ++L++L+P +  +YVLLSNIYA  G+W  V+ +R LM+   +KK+PG S IEV+G
Sbjct: 558 AEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDG 617

Query: 516 HVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSE 571
            VH F  G   H  AK+I++KL++I+A     GY+P    +L  ++EE  KE+AL  HSE
Sbjct: 618 IVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSE 677

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
           KLA+AFGLI T     I+IVK L +CGDCHS+ K  SK+  REI+LRD  RFH+F++G C
Sbjct: 678 KLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHC 737

Query: 631 SCRDYW 636
           SC DYW
Sbjct: 738 SCMDYW 743


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 254/705 (36%), Positives = 377/705 (53%), Gaps = 103/705 (14%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTP 91
           +SL+H+  + + LR IHAQ+I   L  ++   ++LI    L    D   YA+S+F+    
Sbjct: 6   LSLLHNCKTLQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQE 65

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            NL I+N + RG A +S   S +  +V M+ L + PN  T+PF+ KS A       G+ +
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQI 125

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------- 194
           H  ++K G + D +V   L  MYVQ G+   A KVFD++  ++                 
Sbjct: 126 HGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYI 185

Query: 195 ----------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
                       + V+ WN +I+G ++ G  ++A+ELF  M K NV              
Sbjct: 186 ASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 245

Query: 232 -------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                        SW+             +LID +++ G+++ A  LFE +  K V+SW 
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWN 305

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            +I G++     ++AL +F +ML +G   ND T++S L ACA +GA+E G  +H YI+  
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKR 365

Query: 326 DFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
             G+  A    T+L+DMYAKCG+IEAA  VF     + L +W AMI+G A+HGR   A  
Sbjct: 366 LKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFD 425

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F +M  +  EPD   F+ +L+AC +SG + L  + F SM+ DY I P ++H+  +++LL
Sbjct: 426 IFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLL 485

Query: 444 SRVG-------------------------QDSQGYQNSQ--NSFTK-LLQLKPKHPSSYV 475
              G                         +  + Y N +   S+ + L++++PK+P SYV
Sbjct: 486 GHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYV 545

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
           LLSNIYA  GRW +VA++R L+  + +KK PG S IE++  VH F  G   H   +EI+ 
Sbjct: 546 LLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYG 605

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
            LE++     E G++P T  VL  ++EE KE AL  HSEKLA+AFGLI T PGT + IVK
Sbjct: 606 MLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVK 665

Query: 593 KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L +C +CH   K  SKI +REI+ RD TRFH+F+DG CSC DYW
Sbjct: 666 NLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/648 (36%), Positives = 352/648 (54%), Gaps = 71/648 (10%)

Query: 25  PSNNITETHIISL--IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--ID 80
           PS +  + H + L  + S ++  +L+Q H+QII   L A +    ++I   ++ KS  ++
Sbjct: 12  PSLSSAKAHKLPLYGLDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLN 71

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           YAL +FD     + +I+N + RG       ++CI  +  ML  SV PN+ TYP + ++  
Sbjct: 72  YALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACC 131

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
               +  G+ +H  ++K G   D F   +L  MYV       A +VFD            
Sbjct: 132 IDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDN----------- 180

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
                                   MP+++V SW SLI G+ + G + KA E+FE MPE+ 
Sbjct: 181 ------------------------MPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERN 216

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            VSW AMI  + Q+    +A A+F +M    V  + F   S LSAC  +GALE G  +H 
Sbjct: 217 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHG 276

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI  +   L   + T ++DMY KCG +E AS VF E  +K + +W  MI GLA+HG+ E 
Sbjct: 277 YIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEA 336

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI+ FK+M      PDG  F+ +L+AC +SG V+   ++F  M     ++P ++H   +V
Sbjct: 337 AIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMV 396

Query: 441 NLLSRVG--QDSQGYQNS--------------------------QNSFTKLLQLKPKHPS 472
           +LL R G  ++++   N                           +    K+++L+P +  
Sbjct: 397 DLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNSG 456

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKE 530
            YVLL+N+YA+ GRW+DVA+VR LM  R +KK PG+S IE    V  F AGG  H  AKE
Sbjct: 457 RYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAKE 516

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I++KL++I+   R  GY+P T+ VLH+I +EEKE  L  HSEKLA+AFGL++T PG T++
Sbjct: 517 IYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETLR 576

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I K L IC DCH   K  SK+  REI++RD  RFH+F+ G CSC+DYW
Sbjct: 577 ISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/729 (33%), Positives = 383/729 (52%), Gaps = 105/729 (14%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           ++TT  A ++ +KS   P++ +     ISL+ +  S  QL+Q+H Q I   L A+  +  
Sbjct: 21  QMTTIAATSSALKSFSPPTHPL-----ISLLETCESMDQLQQVHCQAIKKGLNANPVLQN 75

Query: 68  QLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
           ++++    H+  D  YA  +FD     NL I+N +IRG +     Q  +S ++ MLR  V
Sbjct: 76  RVMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGV 135

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-----AFVRVHL---------- 170
           +P+R T+PF+ K       L  GR LH  ++K G++Y+     A V+++L          
Sbjct: 136 KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARG 195

Query: 171 -------ADM---------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
                  AD+         Y ++GK   + ++F    +K    + +   ++++ CSK+  
Sbjct: 196 VFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKD 255

Query: 215 LR-----------------------------------KAVELFGMMPKKNVASWVSLIDG 239
           LR                                    A+ +F  M  +++ SW +++ G
Sbjct: 256 LRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSG 315

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           F   G++  A   F++MPEK  VSWTAMI+G+ ++   ++AL +F  M    V+ ++FT+
Sbjct: 316 FTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTM 375

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           VS L+ACA +GALE G  +  YI  N       +  AL+DMY KCG+++ A  +F E  +
Sbjct: 376 VSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQ 435

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           +D  TWTAMI GLA++G  E+A+  F  M+ +   PD   ++ +L+AC ++G V     +
Sbjct: 436 RDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKY 495

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------------- 462
           F  M   + IEP++ H+  +V+LL+R G+  + Y+  +N   K                 
Sbjct: 496 FLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYR 555

Query: 463 -----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                      +L+L+P + + YVLL NIYAA  RW D+  +R +M  + IKK PG S I
Sbjct: 556 ESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLI 615

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGC 568
           E+NG VH F AG   H   K I +KL+ +    +  GY P    V  +I EE KE ++  
Sbjct: 616 EMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFR 675

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLA+AFGLI + PG TI+I K L +C DCH++ K  SK+  RE+++RD TRFH+FK 
Sbjct: 676 HSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKH 735

Query: 628 GTCSCRDYW 636
           G CSC+DYW
Sbjct: 736 GLCSCKDYW 744


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 244/728 (33%), Positives = 382/728 (52%), Gaps = 105/728 (14%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           +TT  A ++ +KS   P++      +ISL+ +  S  QL+Q+H Q I   L A+  +  +
Sbjct: 1   MTTIAATSSALKSFSPPTH-----PLISLLETCESMDQLQQVHCQAIKKGLNANPVLQNR 55

Query: 69  LISSASLHKSID--YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           +++    H+  D  YA  +FD     NL I+N +IRG +     Q  +S ++ MLR  V+
Sbjct: 56  VMTFCCTHEYGDFQYARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK 115

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-----AFVRVHL----------- 170
           P+R T+PF+ K       L  GR LH  ++K G++Y+     A V+++L           
Sbjct: 116 PDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGV 175

Query: 171 ------ADM---------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
                 AD+         Y ++GK   + ++F    +K    + +   ++++ CSK+  L
Sbjct: 176 FDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDL 235

Query: 216 R-----------------------------------KAVELFGMMPKKNVASWVSLIDGF 240
           R                                    A+ +F  M  +++ SW +++ GF
Sbjct: 236 RTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGF 295

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
              G++  A   F++MPEK  VSWTAMI+G+ ++   ++AL +F  M    V+ ++FT+V
Sbjct: 296 TNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMV 355

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L+ACA +GALE G  +  YI  N       +  AL+DMY KCG+++ A  +F E  ++
Sbjct: 356 SVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQR 415

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D  TWTAMI GLA++G  E+A+  F  M+ +   PD   ++ +L+AC ++G V     +F
Sbjct: 416 DKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYF 475

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------ 462
             M   + IEP++ H+  +V+LL+R G+  + Y+  +N   K                  
Sbjct: 476 LRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRE 535

Query: 463 ----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     +L+L+P + + YVLL NIYAA  RW D+  +R +M  + IKK PG S IE
Sbjct: 536 SDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIE 595

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCH 569
           +NG VH F AG   H   K I +KL+ +    +  GY P    V  +I EE KE ++  H
Sbjct: 596 MNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRH 655

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SEKLA+AFGLI + PG TI+I K L +C DCH++ K  SK+  RE+++RD TRFH+FK G
Sbjct: 656 SEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHG 715

Query: 629 TCSCRDYW 636
            CSC+DYW
Sbjct: 716 LCSCKDYW 723


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 238/673 (35%), Positives = 366/673 (54%), Gaps = 77/673 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPKNL 94
           ++    + K L+Q+HA ++         IT  ++ SA+L    +IDYALSIF+H      
Sbjct: 27  ILQQCKTPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPES 86

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
             +NV+IRGLA      + +  F  M   SV+ ++ T+  V K+ + +  L  G  +H L
Sbjct: 87  SAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHAL 146

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           I+KSG + + FV   L  MY   G+   A  VFD  PE+    S++ WN +++G +K G 
Sbjct: 147 ILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPER----SIVAWNSMLSGYTKNGL 202

Query: 215 LRKAVELF----------------------GMMP-----------------KKNVASWVS 235
             + V+LF                      G +                  ++N     S
Sbjct: 203 WDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTS 262

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LID + + G +  A +LF++M ++ VV+W+AMI+G++Q    ++AL +F +M    V  N
Sbjct: 263 LIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPN 322

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           + T+VS L +CA +GA E G  VH YI      L   +GT L+D YAKCG I+ +  VF 
Sbjct: 323 EVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFK 382

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E   K++ TWTA+I GLA +G  + A+++F  M+ +  +P+   F+ +L+AC ++  V  
Sbjct: 383 EMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQ 442

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------------- 454
             + F+SMR D+ IEP ++H+  +V++L R G   + YQ                     
Sbjct: 443 GRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASC 502

Query: 455 -------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                   ++ S   + +L+P H   Y+LLSN YA  GR +D  RVR+L++ + IKK PG
Sbjct: 503 RAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPG 562

Query: 508 WSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWV-LHNIKEEKEE 564
            S IE++G VH F  E G HK +KEIH  L+ +M   +  GY+P T+   L   +E KE 
Sbjct: 563 CSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKET 622

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
           ++  HSEKLA+A+GLI+T+P TTI+I K L +C DCH+  K+ S++ +R I++RD  RFH
Sbjct: 623 SVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFH 682

Query: 624 YFKDGTCSCRDYW 636
           +FKDG CSC DYW
Sbjct: 683 HFKDGLCSCNDYW 695


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 245/694 (35%), Positives = 369/694 (53%), Gaps = 86/694 (12%)

Query: 24  KPSNNIT------ETHIISLIHSSNSTKQLRQIHAQIILH-NLFASSRITTQLISSASLH 76
           KPS+  T       T + SL +S + T+ L Q+HA +     L  ++ + T+L +  ++ 
Sbjct: 13  KPSSTSTFDSLQCGTLLQSLTNSKSLTQAL-QLHAHVTTGGTLRRNTYLATKLAACYAVC 71

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
             + YA  IFD    KN  ++N +IRG A N+     +  ++ ML    +P+  TYPFV 
Sbjct: 72  GHMPYAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVL 131

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           K+   L L  +GR +H L+V  G+E D +V   +  MY + G    A  VFD    ++ +
Sbjct: 132 KACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLT 191

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNV 230
                WN +++G  K G  R A E+FG M +                          K +
Sbjct: 192 S----WNTMMSGFVKNGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEI 247

Query: 231 ASWV----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
             +V                S+ID +     +  A +LFE +  K VVSW ++I+G+ + 
Sbjct: 248 HGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKC 307

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G+A +AL +F +M+  G   ++ TV+S L+AC ++ AL  G  V +Y+    + +   +G
Sbjct: 308 GDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVG 367

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TAL+ MYA CG++  A  VF E  EK+L   T M+ G  IHGR  +AI  F +M+  G  
Sbjct: 368 TALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVT 427

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           PD  +F A+L+AC +SG V      F  M  DY +EP   H++ +V+LL R G   + Y 
Sbjct: 428 PDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYA 487

Query: 455 NSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
             +N                            S  KL +L P   S YV LSNIYAAE R
Sbjct: 488 VIENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERR 547

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           W+DV  VR L+ +R ++K P +S++E+N  VH+F  G   H+ + +I++KL+D+    ++
Sbjct: 548 WEDVENVRALVAKRRLRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKK 607

Query: 545 QGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY P T  VL++++EE KE+ L  HSE+LALAF LI T PGTTI+I K L +CGDCH++
Sbjct: 608 AGYKPDTSLVLYDVEEEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTV 667

Query: 604 MKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K  SK++ REI++RD  RFH+F+DG CSC  YW
Sbjct: 668 IKMISKLTNREIIMRDICRFHHFRDGLCSCGGYW 701


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/672 (35%), Positives = 362/672 (53%), Gaps = 80/672 (11%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLH 95
           +    +  QL+QIHAQ++   LF      +++++  +LH S  + YA  +F+        
Sbjct: 47  LEKCTTMSQLKQIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTF 106

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
             N +IRG    +  +  I  +  M+   + P+R T+P + KS     +L  G+ LHC  
Sbjct: 107 TCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHS 163

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            K G   DA+++  L +MY   G    A KVFD    K  ++SV+ W  +I   ++    
Sbjct: 164 TKLGFASDAYIQNTLMNMYSNCGCLVSARKVFD----KMVNKSVVSWATMIGAYAQWDLP 219

Query: 216 RKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE-------------------- 251
            +A++LF  M     K N  + V+++    R  DL+ A +                    
Sbjct: 220 HEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSAL 279

Query: 252 ---------------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
                          LF +MPEK +  W  MING  ++ + E+AL++F +M  +GV+ + 
Sbjct: 280 MDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDK 339

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T+ S L AC  +GALE G  +H YI      +  A+GTALVDMYAKCG+IE+A  VF E
Sbjct: 340 VTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQE 399

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             EKD++TWTA+I GLA+ G+  +A++ F +M  S  +PD   F+ +L AC ++G V   
Sbjct: 400 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 459

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------------ 458
           + +F+SM   Y I+PS++H+  +V++L R G+ ++     QN                  
Sbjct: 460 IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACR 519

Query: 459 ----------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                     +  +L++L PK+  +YVLLSNIY++   W+   ++R LM  R+IKK PG 
Sbjct: 520 IHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGC 579

Query: 509 SYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEA 565
           S IEV G VH F  G   H  + EI+  L+D+M   +  GY+P    VL ++ E EKE  
Sbjct: 580 SAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENE 639

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHY 624
           L  HSEKLA+AFGL+ TTPGT I++VK L +C DCHS MK+ S++  REI++RD  RFH+
Sbjct: 640 LSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHH 699

Query: 625 FKDGTCSCRDYW 636
           F  G+CSCRD+W
Sbjct: 700 FTKGSCSCRDFW 711



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 174/408 (42%), Gaps = 47/408 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           SL  S     + +Q+H         + + I   L++  S    +  A  +FD    K++ 
Sbjct: 145 SLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVV 204

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +  +I   A+       I  F  M   SV+PN +T   V  + A    L   + +H  I
Sbjct: 205 SWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYI 264

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            ++G+ +   +   L D+Y + G    A  +F++ PEKN    +  WN++ING  +    
Sbjct: 265 DETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKN----LFCWNIMINGHVEDSDY 320

Query: 216 RKAVELFGMMP---------------------------------------KKNVASWVSL 236
            +A+ LF  M                                        + +VA   +L
Sbjct: 321 EEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTAL 380

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +D + + G ++ A  +F++MPEK V++WTA+I G +  G+  KAL +F +M  + V+ + 
Sbjct: 381 VDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 440

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLV 353
            T V  L+AC+  G +  G+   N +  N +G++ +I     +VDM  + G I EA  L+
Sbjct: 441 ITFVGVLAACSHAGLVNEGIAYFNSMP-NKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 499

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
                  D      ++    IHG    A +  ++++    +  GT  L
Sbjct: 500 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVL 547


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/666 (34%), Positives = 363/666 (54%), Gaps = 75/666 (11%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
           N   QL+ IHA+++  +L   + +   ++  A    S +Y+  +F      N+ ++N +I
Sbjct: 27  NFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMI 86

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
           RGL     F   I  +  M      PN  T PFV K+ A    + LG  +H L+VK+G +
Sbjct: 87  RGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD 146

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
           +D FV+  L  +YV+      A KVFD+ P+KN    V+ W  +I G    G+ R+A+  
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN----VVSWTAIITGYISSGHFREAIGA 202

Query: 222 F------GMMPK---------------------------------KNVASWVSLIDGFMR 242
           F      G+ P                                  +NV    SL+D +++
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G+L++A  +F  MPEK +VSW+ MI G++ NG  ++AL +FFQM    ++ + +T+V  
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LSACA +GAL+ G+   + +  N+F     +GTAL+DMY+KCG++  A  +F   K+KD 
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDR 382

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           + W AM+ GL+++G  +     F  +   G  PD   F+ +L  C + G V     FF++
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN 442

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS----------------------- 459
           M+  + + PS++H+  +V+LL R G  ++ +Q   N                        
Sbjct: 443 MKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTH 502

Query: 460 -----FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
                  KL++L+P +  +YV LSNIY+   RW++  ++R+ M+ + I+K    S+IE++
Sbjct: 503 LAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSE 571
           G VH F  G   H L+++I++KL+++    +  G++P TE+VL +I+EE KE  LG HSE
Sbjct: 563 GIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSE 622

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
           KLA+AFGLI + P   I++VK L +CGDCH  +K  SKI++REI++RDT RFH F DG+C
Sbjct: 623 KLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSC 682

Query: 631 SCRDYW 636
           SCRDYW
Sbjct: 683 SCRDYW 688



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 171/405 (42%), Gaps = 47/405 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           NN T   ++         +   +IH+ ++         + T L+S      + D AL +F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KN+  +  +I G   + HF+  I  F  +L + ++P+  +   V  + A L   +
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G  +   I  SG+  + FV   L DMYV+ G    A  +F   PEK+    ++ W+ +I
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKD----IVSWSTMI 288

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS----------------------WVS--------- 235
            G +  G  ++A++LF  M  +N+                        W S         
Sbjct: 289 QGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFL 348

Query: 236 --------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                   LID + + G + +A E+F  M +K  V W AM+ G S NG A+   ++F  +
Sbjct: 349 SNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLV 408

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG 345
              G+R ++ T +  L  C   G +  G +  N +    F L  +I     +VD+  + G
Sbjct: 409 EKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK-RVFSLTPSIEHYGCMVDLLGRAG 467

Query: 346 NI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
            + EA  L+     + + + W A++ G  +H     A Q  KK++
Sbjct: 468 LLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLI 512


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/666 (34%), Positives = 362/666 (54%), Gaps = 75/666 (11%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
           N   QL+ IHA+++  +L   + +   ++  A    S +Y+  +F      N+ ++N +I
Sbjct: 27  NFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWNTMI 86

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
           RGL     F   I  +  M      PN  T PFV K+ A    + LG  +H L+VK+G +
Sbjct: 87  RGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYD 146

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
           +D FV+  L  +YV+      A KVFD+ P+KN    V+ W  +I G    G+ R+A+  
Sbjct: 147 HDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN----VVSWTAIITGYISSGHFREAIGA 202

Query: 222 F------GMMPK---------------------------------KNVASWVSLIDGFMR 242
           F      G+ P                                  +NV    SL+D +++
Sbjct: 203 FKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVK 262

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G+L++A  +F  MPEK +VSW+ MI G++ NG  ++AL +FFQM    ++ + +T+V  
Sbjct: 263 CGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGV 322

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LSACA +GAL+ G+   + +  N+F     +GTAL+DMY+KCG++  A  +F   K KD 
Sbjct: 323 LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDR 382

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           + W AM+ GL+++G  +     F  +   G  PD   F+ +L  C + G V     FF++
Sbjct: 383 VVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNN 442

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS----------------------- 459
           M+  + + PS++H+  +V+LL R G  ++ +Q   N                        
Sbjct: 443 MKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTH 502

Query: 460 -----FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
                  KL++L+P +  +YV LSNIY+   RW++  ++R+ M+ + I+K    S+IE++
Sbjct: 503 LAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEID 562

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSE 571
           G VH F  G   H L+++I++KL+++    +  G++P TE+VL +I+EE KE  LG HSE
Sbjct: 563 GIVHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSE 622

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
           KLA+AFGLI + P   I++VK L +CGDCH  +K  SKI++REI++RDT RFH F DG+C
Sbjct: 623 KLAVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSC 682

Query: 631 SCRDYW 636
           SCRDYW
Sbjct: 683 SCRDYW 688



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 170/405 (41%), Gaps = 47/405 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           NN T   ++         +   +IH+ ++         + T L+S      + D AL +F
Sbjct: 113 NNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVF 172

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KN+  +  +I G   + HF+  I  F  +L + ++P+  +   V  + A L   +
Sbjct: 173 DDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCT 232

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G  +   I  SG+  + FV   L DMYV+ G    A  +F   PEK+    ++ W+ +I
Sbjct: 233 SGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKD----IVSWSTMI 288

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS----------------------WVS--------- 235
            G +  G  ++A++LF  M  +N+                        W S         
Sbjct: 289 QGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFL 348

Query: 236 --------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                   LID + + G + +A E+F  M  K  V W AM+ G S NG A+   ++F  +
Sbjct: 349 SNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLV 408

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG 345
              G+R ++ T +  L  C   G +  G +  N +    F L  +I     +VD+  + G
Sbjct: 409 EKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK-RVFSLTPSIEHYGCMVDLLGRAG 467

Query: 346 NI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
            + EA  L+     + + + W A++ G  +H     A Q  KK++
Sbjct: 468 LLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQVLKKLI 512


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/657 (36%), Positives = 359/657 (54%), Gaps = 71/657 (10%)

Query: 14  APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           +P  N   + KP +  +ET  I L+ + NS  +LRQ+HAQII  N   S    T++    
Sbjct: 13  SPNRNQIHNVKPQS--SETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVC 70

Query: 74  SLHKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           +   S  YA  IF     +    F  N  ++ LAE       I  F  + +  V P+  T
Sbjct: 71  AFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFT 130

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
              V ++  +L  LS GR LH ++ K G           +++Y+Q               
Sbjct: 131 CSSVLRACLNLLDLSNGRILHGVVEKVGFR---------SNLYLQ--------------- 166

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                      N++++  +  G + +A  LF  MP+++V +W  +I   +++GD + A +
Sbjct: 167 -----------NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYD 215

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF +MPE+ V SWT+MI G+ Q G+A++A+ +F +M +AGV+ N+ TVV+ L+ACA +GA
Sbjct: 216 LFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGA 275

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           L+ G+R+H Y + + F     I   L+DMY KCG +E A  VF E +E+ +++W+AMI G
Sbjct: 276 LDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGG 335

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           LA+HGR E+A++ F  M   G EP+G  F+ +L AC + G +     FF SM  DY I P
Sbjct: 336 LAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIP 395

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQ----------------------------NSQNSFTKL 463
            ++H+  +V+LLSR G   + ++                             ++ +   L
Sbjct: 396 QIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHL 455

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           L+L P +   YV+LSNIYA  GRW+D ARVR  M+ R +KK PGWS I V+G VH F AG
Sbjct: 456 LELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAG 515

Query: 524 --GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLI 580
              H   ++I  + E+++   R +GY+P T  VL +I+E EK + +  HSEKLAL FGL+
Sbjct: 516 EESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLM 575

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            T   T I+I+K L IC DCHS  K  S I  REIV+RD  RFH F D +CSCRDYW
Sbjct: 576 NTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 258/706 (36%), Positives = 380/706 (53%), Gaps = 105/706 (14%)

Query: 35  ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQLISSASLHKSIDYALSIFDHFT 90
           +SL+H+  + + LR IHAQ+I   LHN  +A SR+    I S +    + YA+S+F+   
Sbjct: 6   LSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNF-DGLPYAISVFETIQ 64

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             NL I+N + RG A +S   S I  +V M+ L + PN  T+PF+ KS A L +   G+ 
Sbjct: 65  EPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD---------------------- 188
           +H  ++K G E D +V   L  MYV+ G+ + A KVFD                      
Sbjct: 125 IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGY 184

Query: 189 -ETPEKNKSE----SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------ 231
            E+ +K   E     V+ WN +I+G +  G  ++A++LF  M K NV             
Sbjct: 185 IESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSA 244

Query: 232 --------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                         SW+             +LID + + G+++ A  LF+ +  K V+SW
Sbjct: 245 CAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISW 304

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
             MI G++     ++AL +F +ML +G   ND T++S L ACA++GA++ G  +H YI  
Sbjct: 305 NTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDK 364

Query: 325 NDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              G+  A  + T+L+DMYAKCG+IEAA  VF     + L    AMI+G A+HGR   A 
Sbjct: 365 RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAF 424

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F +M  +G EPD   F+ +L+AC +SG + L    F SM  +Y I P ++H+  +++L
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDL 484

Query: 443 LSRVG--QDSQGYQNSQN-------------------------SFT-KLLQLKPKHPSSY 474
           L  +G  ++++   N+                           SF  KL++++P++P SY
Sbjct: 485 LGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSY 544

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIH 532
           VLLSNIYA  GRW +VA +R L+  + +KK PG S IE++  VH F  G   H   +EI+
Sbjct: 545 VLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
             LE++     E G++P T  VL  ++EE K+ AL  HSEKLA+AFGLI T PGT + IV
Sbjct: 605 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +C +CH   K  SKI +REI+ RD TRFH+F+DG CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/553 (40%), Positives = 323/553 (58%), Gaps = 48/553 (8%)

Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
           HF+   RL+V  ++      SK+++ L        +H ++ + G+++   +   L   Y 
Sbjct: 26  HFISTNRLAVLIDK------SKTISHL------LQIHAVLFRHGLDHHPILNFKLQRSYA 73

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
            LG+   +  +F  T    ++ SV  W  +I+G +  G +  A +LF  MP+K++ S  +
Sbjct: 74  SLGRLDYSVALFGRT----QNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSLVSLTA 129

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           ++  + + G+L  A  LF+ M E+  V W  MI+G++QNG   +AL +F +ML A  + N
Sbjct: 130 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPN 189

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           + TV+S LSAC ++GALE+G  VH+YI  N       +GTALVDMY+KCG++E A LVF 
Sbjct: 190 EVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFD 249

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +  +KD++ W +MI G A+HG  ++A+Q FK M   G  P    F+ IL+AC +SG V  
Sbjct: 250 KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTE 309

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------- 462
             + F+ M+ +Y IEP ++H+  +VNLL R G   Q Y+  +N   +             
Sbjct: 310 GWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 369

Query: 463 ---------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                          L+     +  +Y+LLSNIYAA G W  VAR+RT+M+   +KK+PG
Sbjct: 370 RLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPG 429

Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEE 564
            S IEVN  VH F AGG  H   KEI+  LE+I    +  GY P T+ VLH+I E EKE 
Sbjct: 430 CSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKER 489

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
           +L  HSEKLA+AFGLI T PGTTIKIVK L +C DCH + K  SKI+ R+IV+RD  RFH
Sbjct: 490 SLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFH 549

Query: 624 YFKDGTCSCRDYW 636
           +F +G+CSC DYW
Sbjct: 550 HFVNGSCSCGDYW 562



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 157/363 (43%), Gaps = 30/363 (8%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           I+   +  LI  S +   L QIHA +  H L     +  +L  S +    +DY++++F  
Sbjct: 28  ISTNRLAVLIDKSKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGR 87

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
               ++  +  +I G A                   V   +L      KS+ SL+ +   
Sbjct: 88  TQNPSVFFWTAIIHGHALRGDV--------------VSAQQLFDTMPEKSLVSLTAMLTC 133

Query: 149 RGLHCLIVKSGVEYDAFVRVH------LADMYVQLGKTRGAFKVFDET-PEKNKSESVLL 201
              H  +  + V +D            + D Y Q G    A  +F      K K   V +
Sbjct: 134 YAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTV 193

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMP 257
            +VL + C ++G L     +   +       NV    +L+D + + G L+ A  +F+++ 
Sbjct: 194 LSVL-SACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKID 252

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +K VV+W +MI G++ +G +++AL +F  M   G+   + T +  LSAC   G +  G  
Sbjct: 253 DKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWD 312

Query: 318 VHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAI 374
           + N +  +++G++  I     +V++  + G++E A  LV     E D + W  ++    +
Sbjct: 313 IFNKMK-DEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRL 371

Query: 375 HGR 377
           HG+
Sbjct: 372 HGK 374



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 139/312 (44%), Gaps = 18/312 (5%)

Query: 50  IHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           + AQ +   +   S ++ T +++  + H  +D A  +FD    ++   +NV+I G  +N 
Sbjct: 110 VSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 169

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                +  F  ML+   +PN +T   V  +   L  L  GR +H  I  +G++++  V  
Sbjct: 170 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 229

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L DMY + G    A  VFD+  +K+    V+ WN +I G +  G+ ++A++LF  M + 
Sbjct: 230 ALVDMYSKCGSLEDARLVFDKIDDKD----VVAWNSMIVGYAMHGFSQEALQLFKSMCRM 285

Query: 229 NV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEK 279
            +     +++ ++      G + +  ++F +M      E  +  +  M+N   + G  E+
Sbjct: 286 GLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQ 345

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A  +   M    +  +     + L AC   G +  G ++   +   +    G     L +
Sbjct: 346 AYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTY-ILLSN 401

Query: 340 MYAKCGNIEAAS 351
           +YA  GN +  +
Sbjct: 402 IYAAVGNWDGVA 413



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 100/247 (40%), Gaps = 8/247 (3%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K+  KP N +T   ++S      + +  R +H+ I  + +  +  + T L+   S   S
Sbjct: 182 LKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 240

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD    K++  +N +I G A +   Q  +  F  M R+ + P  +T+  +  +
Sbjct: 241 LEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSA 300

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSE 197
                 ++ G     +  K   EY    ++ H   M   LG+     + ++     N   
Sbjct: 301 CGHSGWVTEGWD---IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 357

Query: 198 SVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
             +LW  L+  C    KI    K VEL       N  +++ L + +   G+      L  
Sbjct: 358 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 417

Query: 255 QMPEKGV 261
            M + GV
Sbjct: 418 MMKDSGV 424


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 330/598 (55%), Gaps = 72/598 (12%)

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
           S ASL + +DY++++F      ++  +  +I G A     +  ++ +  ML   V PN  
Sbjct: 18  SYASLGR-LDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAF 76

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+     S+  L  +  G+ LH   VK G + D +VR  L D+Y + G    A ++FD  
Sbjct: 77  TF----SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFD-- 130

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                                             MP+K++ S  +++  + + G+L  A 
Sbjct: 131 ---------------------------------TMPEKSLVSLTAMLTCYAKHGELDAAR 157

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF+ M E+  V W  MI+G++QNG   +AL +F +ML A  + N+ TV+S LSAC ++G
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 217

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           ALE+G  VH+YI  N       +GTALVDMY+KCG++E A LVF +  +KD++ W +MI 
Sbjct: 218 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 277

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G A+ G  ++A+Q FK M   G  P    F+ IL+AC +SG V    + F+ M+ +Y IE
Sbjct: 278 GYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 337

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------------------- 462
           P ++H+  +VNLL R G   Q Y+  +N   +                            
Sbjct: 338 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 397

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           L+     +  +Y+LLSNIYAA G W  VAR+RT+M+   +KK+PG S IEVN  VH F A
Sbjct: 398 LVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLA 457

Query: 523 GG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGL 579
           GG  H   KEI+  LE+I    +  GY P T+ VLH+I E EKE +L  HSEKLA+AFGL
Sbjct: 458 GGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGL 517

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I T PGTTIKIVK L +C DCH + K  SKI+ R+IV+RD  RFH+F +G+CSC DYW
Sbjct: 518 INTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/312 (22%), Positives = 139/312 (44%), Gaps = 18/312 (5%)

Query: 50  IHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           + AQ +   +   S ++ T +++  + H  +D A  +FD    ++   +NV+I G  +N 
Sbjct: 123 VSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 182

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                +  F  ML+   +PN +T   V  +   L  L  GR +H  I  +G++++  V  
Sbjct: 183 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 242

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L DMY + G    A  VFD+  +K+    V+ WN +I G +  G+ ++A++LF  M + 
Sbjct: 243 ALVDMYSKCGSLEDARLVFDKIDDKD----VVAWNSMIVGYAMXGFSQEALQLFKSMCRM 298

Query: 229 NV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEK 279
            +     +++ ++      G + +  ++F +M      E  +  +  M+N   + G  E+
Sbjct: 299 GLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQ 358

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A  +   M    +  +     + L AC   G +  G ++   +   +    G     L +
Sbjct: 359 AYELVKNM---NIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTY-ILLSN 414

Query: 340 MYAKCGNIEAAS 351
           +YA  GN +  +
Sbjct: 415 IYAAVGNWDGVA 426



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 117/256 (45%), Gaps = 5/256 (1%)

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
           E  K  + +  + L    + +G L  +V LFG     +V  W ++I G   +G  ++A  
Sbjct: 2   EDKKPPAXVPLDKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALN 61

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
            + QM  +GV       +   +    E   A+  Q +  G  ++ +     L   A+ G 
Sbjct: 62  FYAQMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGD 121

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           + +  ++ + +            TA++  YAK G ++AA ++F   +E+D + W  MI G
Sbjct: 122 VVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDG 177

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
              +G   +A+  F++M+ +  +P+    L++L+AC   G ++    +  S   +  I+ 
Sbjct: 178 YTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESG-RWVHSYIENNGIQF 236

Query: 432 SVKHHTVVVNLLSRVG 447
           +V   T +V++ S+ G
Sbjct: 237 NVHVGTALVDMYSKCG 252



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/247 (21%), Positives = 99/247 (40%), Gaps = 8/247 (3%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K+  KP N +T   ++S      + +  R +H+ I  + +  +  + T L+   S   S
Sbjct: 195 LKAKAKP-NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD    K++  +N +I G A     Q  +  F  M R+ + P  +T+  +  +
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSE 197
                 ++ G     +  K   EY    ++ H   M   LG+     + ++     N   
Sbjct: 314 CGHSGWVTEGWD---IFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEP 370

Query: 198 SVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
             +LW  L+  C    KI    K VEL       N  +++ L + +   G+      L  
Sbjct: 371 DPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRT 430

Query: 255 QMPEKGV 261
            M + GV
Sbjct: 431 MMKDSGV 437


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/666 (34%), Positives = 368/666 (55%), Gaps = 79/666 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLI-SSASLHKSIDYALSIFDHFTPKNLHIF--NVLI 101
           K  +  H +++  NL   + + + ++ S+ +   +  Y + +F H TP N + F  N +I
Sbjct: 18  KHAKLAHCRLLRLNLHHDNDLLSIILRSTINFSNNAQYPILVF-HKTPTNSNTFLYNTMI 76

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
           RG+     F + +  +  M + ++ P+  T+ FV K+ A L+L  LG  +H L+ K+G +
Sbjct: 77  RGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVMIHSLVFKTGFD 136

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
            D FV+ ++   Y + G  R A+KVFD+   KN    V+ W  +I GC + G  R+AV+L
Sbjct: 137 CDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKN----VVSWTGMICGCIEFGKFREAVDL 192

Query: 222 F------GMMPK---------------------------------KNVASWVSLIDGFMR 242
           F      G+ P                                  +NV    SL+D + +
Sbjct: 193 FRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATSLVDMYTK 252

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G +++A  +F+ M EK +V W+AMI G++ NG   +A+ +FF+M    VR + + +V A
Sbjct: 253 CGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPDCYAMVGA 312

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LS+CA +GALE G      ++  +F     +GT+L+D YAKCG++E A  V+   KEKD 
Sbjct: 313 LSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           + + A+I GLA++G+   A   F +M   G  P+   F+ +L  C ++G V    ++F+S
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------Q 454
           M  D+ + P+++H+  +V+LL+R G   + +                            Q
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
            +++   +L++L+P +   YVLLSNIY+A  RW +  ++R+ +  + ++K PG+S++EV+
Sbjct: 493 LAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSE 571
           G VH F  G   H L+++I+ KLE +    +E GY P TE+VL +++EE KE  LGCHSE
Sbjct: 553 GVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSE 612

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           KLA+AF LI T     I++VK L +CGDCH  +K+ SK++ REIV+RD  RFH F DG C
Sbjct: 613 KLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGAC 672

Query: 631 SCRDYW 636
           SCRDYW
Sbjct: 673 SCRDYW 678


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 235/660 (35%), Positives = 357/660 (54%), Gaps = 71/660 (10%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFNVL 100
           + +++ Q+HA  +   +F    ++++L++  S  K  D  YA SIFD    ++L  +N +
Sbjct: 25  APQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWNTI 84

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           I+   EN      I  F  ++     P+  T P V K  A L ++  G+ +H L +K G 
Sbjct: 85  IKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGF 143

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFD-------------------------------E 189
             D FV+  L +MY + G+   A KVFD                               E
Sbjct: 144 GSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEE 203

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
            PE++       W VL++G SK G +  A +LF  MP +N+ SW ++I+G+M+ GD   A
Sbjct: 204 MPERD----AFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSA 259

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            ELF QMP   +V+W  MI G+  NG+   A+ MFF ML  G R +  T+VS LSA + +
Sbjct: 260 LELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGL 319

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
             L  G  +H+Y+  N F L G +GT+L++MYAKCG IE+A  VF   ++K +  WTA+I
Sbjct: 320 AVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAII 379

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            GL IHG    A+  F +M  +G +P+  +F+ +L AC ++G V     +FD M  +Y I
Sbjct: 380 VGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKI 439

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFT 461
           EP+++H+  +V++L R G   +     +N                            +  
Sbjct: 440 EPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQ 499

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
           +++++ P+    Y+LLSN+YAA G W+ V+ VR +M +R  +KDPG S +E  G +H F 
Sbjct: 500 RVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFI 559

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAF 577
            G   H   KEI++K+ ++    +  G++P T  VL  I  ++EKE  L  HSE+LA+AF
Sbjct: 560 VGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAF 619

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           GLI   PG  I+I+K L +C DCHS+ K  SKI  REI++RD  RFH+FK+G+CSC DYW
Sbjct: 620 GLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 679



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 64/285 (22%), Positives = 112/285 (39%), Gaps = 43/285 (15%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           T ++  +      +  R++  Q+   NL + + +    + S       D AL +F     
Sbjct: 213 TVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMKSGDF----DSALELFYQMPI 268

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            +L  +N++I G   N  F   +  F  ML+L  RP+  T   V  +V+ L++L  GR +
Sbjct: 269 WDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWI 328

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------- 194
           H  + K+G E D  +   L +MY + G    A  VF    +K                  
Sbjct: 329 HSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMA 388

Query: 195 ---------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-----NVASWV 234
                          K  +++   VL N C+  G +    + F MM  +      +  + 
Sbjct: 389 NHALALFLEMCKTGLKPNAIIFIGVL-NACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYG 447

Query: 235 SLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAE 278
            L+D   R G L++A    E MP     V W +++ G   +G+ +
Sbjct: 448 CLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKID 492


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/639 (35%), Positives = 350/639 (54%), Gaps = 74/639 (11%)

Query: 35  ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           + L+   ++ + L+ IHA ++      ++FA+SR+    I S +    + YA+ +     
Sbjct: 21  LVLLECCSNARDLKIIHAHMLRTHLFFDVFAASRLIAFCIDSTT--NLLHYAIRVASQIQ 78

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             NL I+N LIRG + + + ++   +++  LR  + P+ +T+PF+ K+ A L    +G  
Sbjct: 79  NPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQ 138

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
            H   +K G E D +V+  L  MY  +G    A  VF                       
Sbjct: 139 THGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQR--------------------- 177

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                         M + +V SW  +I G+ R GD K A ELF++MPE+ +V+W+ MI+G
Sbjct: 178 --------------MCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISG 223

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           +++N   EKA+  F  +   GV AN+  +V  +S+CA +GAL  G + H Y+  N   L 
Sbjct: 224 YARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLN 283

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +GTA+VDMYA+CGN+E A +VF +  EKD+L WTA+I GLA+HG  E+A+ YF +M  
Sbjct: 284 LILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAK 343

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
            G  P    F A+LTAC ++G V+  L  F+SM+ D+ +EP ++H+  +V+LL R G+  
Sbjct: 344 KGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLR 403

Query: 451 QGYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYA 482
           +  +       K                            LL+++P++   YVLLSNIYA
Sbjct: 404 KAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYA 463

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLED-IM 539
              +WKDV  +R +M+ + ++K PG+S IE++G VH F  G   H   ++I    ED I+
Sbjct: 464 RANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIIL 523

Query: 540 AGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              +  GY+  T   + +I +EEKE AL  HSEKLA+A+G+++    T I+IVK L +C 
Sbjct: 524 PKIKLAGYVGNTAETMFDIDEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCE 583

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCH+  K  SK+ + E+++RD  RFH+FK+GTCSC DYW
Sbjct: 584 DCHTATKLISKVFEVELIVRDRNRFHHFKEGTCSCMDYW 622



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 133/332 (40%), Gaps = 47/332 (14%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILH-------------NLFAS------SRITT 67
           +NIT   ++       +     Q H Q I H             +++AS      +R   
Sbjct: 116 DNITHPFLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVF 175

Query: 68  QLISS----------ASLHKSIDY--ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
           Q +            A  H+  D   A  +FD    +NL  ++ +I G A N+ F+  + 
Sbjct: 176 QRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVE 235

Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
            F  +    V  N      V  S A L  L++G   H  ++++ +  +  +   + DMY 
Sbjct: 236 TFEALQAEGVVANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYA 295

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---- 231
           + G    A  VF++ PEK+    VL W  LI G +  GY  KA+  F  M KK       
Sbjct: 296 RCGNVEKAVMVFEQLPEKD----VLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDI 351

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           ++ +++      G +++  E+FE M      E  +  +  M++   + G+  KA     +
Sbjct: 352 TFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLK 411

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           M    V+ N     + L AC     +E G RV
Sbjct: 412 M---PVKPNAPIWRALLGACRIHKNVEVGERV 440


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 249/693 (35%), Positives = 369/693 (53%), Gaps = 103/693 (14%)

Query: 47  LRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLIRG 103
           LR IHAQ+I   L  ++   ++LI    L    D   YA+S+F+     NL I+N + RG
Sbjct: 3   LRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            A +S   S +  +V M+ L + PN  T+PF+ KS A       G+ +H  ++K G + D
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KS 196
            +V   L  MYVQ G+   A KVFD++  ++                             
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------- 231
           + V+ WN +I+G ++ G  ++A+ELF  M K NV                          
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQV 242

Query: 232 -SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
            SW+             +LID +++ G+++ A  LFE +  K V+SW  +I G++     
Sbjct: 243 HSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--T 335
           ++AL +F +ML +G   ND T++S L ACA +GA+E G  +H YI+    G+  A    T
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRT 362

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           +L+DMYAKCG+IEAA  VF     + L +W AMI+G A+HGR   A   F +M  +  EP
Sbjct: 363 SLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEP 422

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGY 453
           D   F+ +L+AC +SG + L  + F SM+ DY I P ++H+  +++LL   G  ++++  
Sbjct: 423 DDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEM 482

Query: 454 QNS--------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
            N+                          ++    L++++PK+P SYVLLSNIYA  GRW
Sbjct: 483 INTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRW 542

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ 545
            +VA++R L+  + +KK PG S IE++  VH F  G   H   +EI+  LE++     E 
Sbjct: 543 NEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEA 602

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           G++P T  VL  ++EE KE AL  HSEKLA+AFGLI T PGT + IVK L +C +CH   
Sbjct: 603 GFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEAT 662

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  SKI +REI+ RD TRFH+F+DG CSC DYW
Sbjct: 663 KLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 254/712 (35%), Positives = 375/712 (52%), Gaps = 117/712 (16%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTP 91
           +SL+H   + + LR IHAQ+I   L  ++   ++L+    L    D   YA+S+FD    
Sbjct: 6   LSLLHXCKTLQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQE 65

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
             L I+N + RG A +S   S +  +V M+ L + PN  T+PF+ KS A       G+ L
Sbjct: 66  PXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQL 125

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGK---------------------------TRG-- 182
           H  ++K G + D ++   L  MYVQ G+                           +RG  
Sbjct: 126 HGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXI 185

Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------- 231
             A K+FDE P K+    V+ WN  I+G ++ G  ++A+ELF  M K NV          
Sbjct: 186 ESAHKMFDEIPVKD----VVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTV 241

Query: 232 -----------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGV 261
                            SW+             +LID + + G+L+ A  LF+ +  K V
Sbjct: 242 LSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDV 301

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           +SW  +I G++     ++AL +F  ML +G + ND T++S LSACA +GA++ G  +H Y
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVY 361

Query: 322 ISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           I   D  LKG     ++ T+L+DMYAKCG+IEAA  VF     + L +W AMI+G A+HG
Sbjct: 362 I---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHG 418

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           R   A   F +M  +G EPD   F+ +L+AC +SG + L  + F SM  DY + P ++H+
Sbjct: 419 RANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHY 478

Query: 437 TVVVNLLSRVG--QDSQGYQNS--------------------------QNSFTKLLQLKP 468
             +++L    G  ++++   N+                          ++    L++++P
Sbjct: 479 GCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEP 538

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HK 526
           ++P SYVLLSNIYA   RW +VA+ R L+  + +KK PG S IE++  VH F  G   H 
Sbjct: 539 ENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHP 598

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPG 585
             +EI+  LE++     E G++P T  VL  ++EE KE AL  HSEKLA+AFGLI T PG
Sbjct: 599 RNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPG 658

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T + IVK L +C +CH   K  SKI +REI+ RD TRFH+F+DG CSC DYW
Sbjct: 659 TKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/629 (36%), Positives = 351/629 (55%), Gaps = 55/629 (8%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           + + L+Q+HAQ+I            +L+  S+ S H+ +DYA  IF      N   +N L
Sbjct: 23  TMQDLKQLHAQMIKTAQIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTL 82

Query: 101 IRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           IR L+E++     +  F+ M+   SV PN  T+P V K+      L  GR +H L VK G
Sbjct: 83  IRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFG 142

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           ++ D FV  ++  MY+  G    A ++F                V ++GC  I   ++ V
Sbjct: 143 LDSDEFVVSNVVRMYLSCGVMEDAHRLFYR-------------RVFVDGCDGIRDKKRRV 189

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
           +        +V  W  +IDG++R G+L+ A  LF++MP++ VVSW  MI G++Q+G  ++
Sbjct: 190 D-------GDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKE 242

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A+ +F +M  A V  N  T+VS L A +++GALE G  VH Y   N+ G+   +G+AL+D
Sbjct: 243 AVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALID 302

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAKCG+IE A  VF    +++++TW+ +I GLA+HGR +  + +F+ M  +G  P    
Sbjct: 303 MYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVT 362

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459
           ++ +L+AC ++G V     FFD M     +EP ++H+  +V+LL R G   +  +   N 
Sbjct: 363 YIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNM 422

Query: 460 FTK----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
             K                            L++L P    SYV LSNIYA+ G W+ VA
Sbjct: 423 PIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVA 482

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR +M+   ++KDPG S+IE++G +H F  E   H  +K+IHS L+++       GY P
Sbjct: 483 KVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRP 542

Query: 550 GTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T  VL N+ EE KE +L  HSEK+A+AFGLI T P T ++I K L IC DCHS +K  S
Sbjct: 543 NTTQVLTNMDEEDKESSLNYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLIS 602

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           KI +R+I++RD  RFH+F +G+CSC DYW
Sbjct: 603 KIYKRKIIVRDRKRFHHFVNGSCSCMDYW 631



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/255 (20%), Positives = 111/255 (43%), Gaps = 9/255 (3%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A+     ++ +  P N +T   ++  +    + +  + +H   + +N+     + + LI 
Sbjct: 243 AVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALID 302

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +   SI+ AL +F+    +N+  ++ +I GLA +   +  + HF  M R  V P+ +T
Sbjct: 303 MYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVT 362

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           Y  +  + +   L++ GR     +V+ SG+E        + D+  + G    + ++    
Sbjct: 363 YIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNM 422

Query: 191 PEKNKSESVLLWNVLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           P K      ++W  L+  C   G +    R A  L  + P  +  S+V+L + +   G+ 
Sbjct: 423 PIKPDD---VIWKALLGACKMHGNVEMGKRVAEHLMELAPHDS-GSYVALSNIYASLGNW 478

Query: 247 KKAGELFEQMPEKGV 261
           +   ++   M E  V
Sbjct: 479 EGVAKVRLMMKEMDV 493


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 357/663 (53%), Gaps = 74/663 (11%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILH-NLFASSRIT 66
           +L ++++ T N   ++ PSN      I+SL +   + + L+Q+HAQII H N        
Sbjct: 49  KLQSSMSRTPN-PLTNPPSN----PQILSLFNPCKTLRHLKQVHAQIITHHNSPFQLSAL 103

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             L + +     + YA +IF H       ++N LIR L+ +      +  +  ML+  ++
Sbjct: 104 ASLSALSPFPTFLAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLK 163

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+ +TYPFV K+    S+   G  +H  +VKSG E D+++   L  +Y   GK  GA K 
Sbjct: 164 PDHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYAN-GKDLGAAK- 221

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
                                            +LF +   ++V SW ++IDG+++  ++
Sbjct: 222 ---------------------------------QLFNLCSARDVVSWNAMIDGYVKHVEM 248

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             A  +F++M  + V+SW  MING++  G+  +ALA+F QM   GV+  + TVVS LSAC
Sbjct: 249 GHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 308

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A +GAL+ G+ +H YI+ N   +   +GTALVDMYAKCG I  A+ VF   + KD+L W 
Sbjct: 309 AHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWN 368

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
            +I G+AIHG  ++A Q FK+M  +G EP+   F+AIL+AC ++G V       D M   
Sbjct: 369 TIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSS 428

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQN 458
           Y IEP V+H+  V++LL+R G   +                             ++  + 
Sbjct: 429 YGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEM 488

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
              +L+ L+P H   Y+LLSNIYAA  +W D  +VR LM+   I K PG S IE+ G VH
Sbjct: 489 VGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVH 548

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQ-GYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           RF AG   H  + +I+ KL +I    +   GY   T  VL +++EE KE AL  HSEKLA
Sbjct: 549 RFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLA 608

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           +A+GL+       I+IVK L +C DCH ++K  SK+  REI++RD  RFH+F+DG CSC 
Sbjct: 609 IAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCL 668

Query: 634 DYW 636
           D+W
Sbjct: 669 DFW 671


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/665 (35%), Positives = 358/665 (53%), Gaps = 81/665 (12%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLHIFNVLIRG 103
           QL+QIHAQ++   LF      +++++  SL +S  + YA  +F        +  N +IRG
Sbjct: 3   QLKQIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRG 62

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
             + +  Q  +  +  M+   + P+R T+P + KS  + S    G+ +HC   K G   D
Sbjct: 63  CTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNSSE---GKQIHCHSTKLGFASD 119

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
            + +  L +MY   G    A KVFD+  +K    +V+ W  +I   ++     +AV LF 
Sbjct: 120 TYAQNTLMNMYSNCGCLVSARKVFDKMEDK----TVVSWATMIGVHAQWDQPNEAVRLFD 175

Query: 224 MMPK---------------------------KNVASWVS-------------LIDGFMRK 243
            M K                           K +  ++              L+D + + 
Sbjct: 176 RMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKC 235

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G ++ A +LF++  EK + SW  MING  ++   E+AL +F +M   G++ +  T+ S L
Sbjct: 236 GCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLL 295

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            AC  +GALE G  +H YI      +  A+GTALVDMYAKCG+IE A  VF E  EKD++
Sbjct: 296 LACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVM 355

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           TWTA+I GLA+ G+ E A+QYF +M   G +PD   F+ +L AC ++G V   ++ F+SM
Sbjct: 356 TWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSM 415

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQN 455
              Y I+P+++H+  +V++L R G+ ++                              + 
Sbjct: 416 SDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEA 475

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
           ++ +  +LL++ P H  +YVLLSNIY +  +W++  R R LM  R ++K PG S IEV+G
Sbjct: 476 AERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHG 535

Query: 516 HVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEK 572
            VH F  G   H+ + EI+  LED+++  +  GY+P    VL ++ +EEKE  L  HSEK
Sbjct: 536 VVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEK 595

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AFGL+ T+ GT I++VK L IC DCHS  K  SK+  REI++RD  RFH+FKDGTCS
Sbjct: 596 LAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCS 655

Query: 632 CRDYW 636
           CR +W
Sbjct: 656 CRGFW 660



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/308 (23%), Positives = 131/308 (42%), Gaps = 16/308 (5%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +KS +   N +T  ++++    +     +++IH  I  H       + T L+        
Sbjct: 178 MKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGC 237

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  A  +FD    KNL  +N++I G  E+S+++  +  F  M    ++ +++T   +  +
Sbjct: 238 VQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLA 297

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
              L  L LG+ LH  I K  ++ D  +   L DMY + G    A +VF E PEK+    
Sbjct: 298 CTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD---- 353

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
           V+ W  LI G +  G    A++ F  M  K V     ++V ++      G + +    F 
Sbjct: 354 VMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFN 413

Query: 255 QMPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M +       +  +  +++   + G   +A  +   M  A    + F +   L AC   
Sbjct: 414 SMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMA---PDQFVLGGLLGACRIH 470

Query: 310 GALEAGVR 317
           G LEA  R
Sbjct: 471 GNLEAAER 478


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 237/648 (36%), Positives = 356/648 (54%), Gaps = 73/648 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNL--FASSRITTQLISSASLHKSIDYALS 84
           N+    H++    +  S +QL +I AQII   +     + I  + I  +S H ++ +++ 
Sbjct: 20  NHRKTIHLLLRCATQLSMRQLFEIQAQIIASPIPSIDPNIIAVKFIGVSSSHGNLRHSVL 79

Query: 85  IFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS--KSVAS 141
           IF+HF    N+  +N L++  ++++ + + IS+F   L L   PN   Y F S  K+ A 
Sbjct: 80  IFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAG 139

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L+ +  G+ +HC + K G E + FVR  L D+Y ++G    A K+FDE            
Sbjct: 140 LAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDE------------ 187

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                                  M  ++V SW +LI G+   G + KA  +F+ M EK +
Sbjct: 188 -----------------------MVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNL 224

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VSW+ MI+G+++N +   A+ +F QM  + G+  ND T+VS LSACA +GAL+ G  +H 
Sbjct: 225 VSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHR 284

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           +I  N   +   +G AL DMYAKCG +  A  VF E  E+D+++W+ +I GLA++G   +
Sbjct: 285 FIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANE 344

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A  +F +M+  G EP+   F+ +LTAC ++G V   L +FD M   Y I P ++H+  VV
Sbjct: 345 AFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVV 404

Query: 441 NLLSRVGQDSQG-------------------------YQNSQNS---FTKLLQLKPKHPS 472
           +LLSR G+  Q                          Y++++       ++L+L   H  
Sbjct: 405 DLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSG 464

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           S V L+N+YA+ GR  D A  R  M+     K PG S+IE+N  V+ F  G   H  +  
Sbjct: 465 SLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLR 524

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I+S + ++    +  GY P T+ V+HNI +EEKE+AL  HSEKLALAFGLI T+ GTTI+
Sbjct: 525 IYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIR 584

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH  +K  SKI +REIV+RD +RFH+FKDG CSC DYW
Sbjct: 585 IVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCNDYW 632


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/644 (33%), Positives = 352/644 (54%), Gaps = 77/644 (11%)

Query: 35  ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQ--LISSASLHKSID---YALSI 85
           ++L+ S +S   L+ IH  ++    + ++F +SR+      +  ++ HK  +   YA  I
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGI 75

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F      NL +FNVLIR  +  +        +  ML+  + P+ +T+PF+ K+   +  +
Sbjct: 76  FSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECV 135

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            +G   H  IV+ G + D +V   L  MY                               
Sbjct: 136 VVGEQTHSQIVRFGFQNDVYVENSLVHMY------------------------------- 164

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
               +  G +  A  +FG MP ++V SW S++ G+ + G ++ A E+F++MP + + +W+
Sbjct: 165 ----ANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWS 220

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            MING+++N   EKA+ +F  M   GV AN+  +VS +S+CA +GALE G R H Y+  +
Sbjct: 221 IMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSCAHLGALEFGERAHEYVVKS 280

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              +   +GTALVDMY +CG IE A  VF E  +KD L+W+++I GLA+HG   +AI YF
Sbjct: 281 HMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYF 340

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M+  G  P      A+L+AC + G V   L  +++M+ DY IEP ++H+  +V++L R
Sbjct: 341 SQMVRLGFSPRDITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGR 400

Query: 446 VGQDSQG-------------------------YQNSQNS---FTKLLQLKPKHPSSYVLL 477
            G+ ++                          Y+N++ +      L+++KP+H   YVLL
Sbjct: 401 AGKLAEAENFILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLL 460

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSK 534
           SNIYA  G+W+ +  +R +M+ + +KK PGWS IE++G +++F  G    H    +I   
Sbjct: 461 SNIYACAGQWEKLESLRDIMKEKLVKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRL 520

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
            E+I+   R  GY   T     ++ +EEKE A+  HSEKLA+A+G+++T  GTTI+IVK 
Sbjct: 521 WEEILGKIRLIGYKGNTGDAFFDVDEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKN 580

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +C DCH+  K  S++  RE ++RD  RFH+F++G CSCRDYW
Sbjct: 581 LRVCEDCHTATKLISEVYGREFIVRDRNRFHHFRNGLCSCRDYW 624


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/666 (34%), Positives = 355/666 (53%), Gaps = 76/666 (11%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S  Q +Q H  ++   L   + +   L+ S+    +  YA  +F      N+ ++N LIR
Sbjct: 15  SLHQAKQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIR 74

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS-LLSLGRGLHCLIVKSGVE 161
           G+  N  F+  +S +  M +    P+  T+PFV K+   L     +G  LH L++K+G +
Sbjct: 75  GMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFD 134

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------- 208
           +D FV+  L  +Y + G    A KVFDE PEKN    V+ W  +I G             
Sbjct: 135 WDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKN----VVSWTAIICGYIESGCFGEALGL 190

Query: 209 ----------------------CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMR 242
                                 CS++G L     + G M +     NV    SL+D + +
Sbjct: 191 FRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAK 250

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G +++A  +F+ M EK VV W+A+I G++ NG  ++AL +FF+M    VR + + +V  
Sbjct: 251 CGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGV 310

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
            SAC+++GALE G      +  ++F     +GTAL+D YAKCG++  A  VF   + KD 
Sbjct: 311 FSACSRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDC 370

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           + + A+I GLA+ G    A   F +M+  G +PDG  F+ +L  C ++G V     +F  
Sbjct: 371 VVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSG 430

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVG-----QD-----------------------SQGYQ 454
           M   + + P+++H+  +V+L +R G     QD                        +  Q
Sbjct: 431 MSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQ 490

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
            +++   +L++L+P +   YVLLSNIY+A  RW +  ++R+ + ++ ++K PG S++EV+
Sbjct: 491 LAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVD 550

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSE 571
           G VH F  G   H L+ +I+ KLE +    RE GY P TE+VL +++EE KE  LGCHSE
Sbjct: 551 GVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSE 610

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           KLA+AF LI T     I++VK L +CGDCH  +K  SK++ REI++RD  RFH+F +G+C
Sbjct: 611 KLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSC 670

Query: 631 SCRDYW 636
           SCRDYW
Sbjct: 671 SCRDYW 676


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 231/724 (31%), Positives = 377/724 (52%), Gaps = 105/724 (14%)

Query: 18  NIKSSHKPS-NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
           N  + ++P+ NN    H ISLI   +S +QL+Q HA +I   +F+     ++L + A+L 
Sbjct: 17  NFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALS 76

Query: 77  K--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR--PNRLTY 132
              S++YA  +FD     N   +N LIR  A        I  F+ M+    +  PN+ T+
Sbjct: 77  SFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTF 136

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHL 170
           PF+ K+ A +S LSLG+ LH + +KS V  D                       F  +  
Sbjct: 137 PFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKE 196

Query: 171 ADM---------YVQLGKTRGAFKVFDETPEKNKSES----------------------- 198
            D+         +VQ G    A ++F +   ++   S                       
Sbjct: 197 KDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRV 256

Query: 199 ------------VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
                       + L N +++  +K G +  A  LF  M +K+  +W +++DG+    D 
Sbjct: 257 CSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDY 316

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSA 305
           + A E+   MP+K +V+W A+I+ + QNG+  +AL +F ++ L   ++ N  T+VS LSA
Sbjct: 317 EAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSA 376

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA+VGALE G  +H+YI  N   +   + +AL+ MY+KCG++E A  VF   +++D+  W
Sbjct: 377 CAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVW 436

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           +AMI GLA+HG   +A+  F KM  +  +P+G  F  +  AC ++G V  A + F  M  
Sbjct: 437 SAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMES 496

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQ 457
            Y I P  KH+  +V++L R G   +  +                             ++
Sbjct: 497 SYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAE 556

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            + T+LL+L+P++  ++VLLSNIYA  G+W +V+ +R  M+   +KK+PG S IE++G +
Sbjct: 557 MACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMI 616

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKL 573
           H F +G   H ++++++ KL ++M   +  GY P    VL  I+EE  KE++L  HSEKL
Sbjct: 617 HEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKL 676

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSC 632
           A+ +GLI T     I+++K L +CGDCH++ K  S++  REI++RD  RFH+F++G CSC
Sbjct: 677 AICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSC 736

Query: 633 RDYW 636
            D+W
Sbjct: 737 NDFW 740


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 341/638 (53%), Gaps = 70/638 (10%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTP 91
           I+  + S  + K L QIHAQ I   +F+ + + ++++S A+L  H SI YA  +F     
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRG 150
            ++ I N LIR  A + +    +  +  M   SV  P+  T+P + K+ + +  L LG  
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEA 157

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  + K G   +  V   L  MY   G    A  VFD T                    
Sbjct: 158 IHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRT-------------------- 197

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                          P+ + ASW  +I G+++ G  K A  +FE MP++ VVSW+ MING
Sbjct: 198 ---------------PECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMING 242

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           + Q    ++ L +F  M+   +  N+  +V+ALSACA +GA+E G  +  Y+   +  L 
Sbjct: 243 YVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLT 302

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +GTAL+DMY+KCG++E A  VF + KEK++L W+AMI GLAI+G+ + A+  F +M  
Sbjct: 303 VRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEM 362

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
            G +P+   F+ IL AC +S  V    +FF SM   Y ++P+  HH  +V+L  R G   
Sbjct: 363 QGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLD 422

Query: 451 QGY---------QNS-------------------QNSFTKLLQLKPKHPSSYVLLSNIYA 482
           Q            NS                   +    +LL+L P H   YVLLSNIYA
Sbjct: 423 QAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGGRYVLLSNIYA 482

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           A GRW  VA +R +M+ R + K PG S+I++   +H F AG   H   + I++KL ++  
Sbjct: 483 ACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEMIYAKLGEMSQ 542

Query: 541 GAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
             +  GY P T  VL ++ +EEKE AL  HSEKLA+AFGLI+T PGTTI+I K L +C D
Sbjct: 543 ELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIRITKNLRVCAD 602

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CHS  K  SKI  REI++RD  RFH+F+DG+CSC D+W
Sbjct: 603 CHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 251/704 (35%), Positives = 374/704 (53%), Gaps = 109/704 (15%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTP 91
           +SL+H+  + + LR IHA++I   L  ++   ++LI  + L    D   YA+S+FD    
Sbjct: 6   LSLLHNCKTLQSLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQE 65

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            NL I+N + RG A +S   S +  +V M+ L + PN  T+PF+ K+ A       G+ +
Sbjct: 66  PNLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQI 125

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------- 194
           H  ++K G + D +V   L  MYV+ G+   A KVFD++  ++                 
Sbjct: 126 HGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYI 185

Query: 195 ----------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
                       + V+ WN LI+G ++ G  ++A+ELF  M K NV              
Sbjct: 186 XSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSAC 245

Query: 232 -------------SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                        SW+             +LID +++ G+++ A  LFE +  K V+SW 
Sbjct: 246 AQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWN 305

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            +I G++     ++AL +F +ML +G   N+ T++S L ACA +GA++ G  +H YI   
Sbjct: 306 TLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYI--- 362

Query: 326 DFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           D  LKG     ++ T+L+DMYAKCG+IEAA  VF     + L +W AMI+G A+HGR   
Sbjct: 363 DKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANP 422

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A   F +M   G EPD   F+ +L+AC +SG + L  + F SM  DY I P ++H+  ++
Sbjct: 423 AFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMI 482

Query: 441 NLLSRVG--QDSQGYQNSQN-------------------------SFTK-LLQLKPKHPS 472
           +LL   G  ++++   NS                           SF + L++++PK+  
Sbjct: 483 DLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSG 542

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKE 530
           SYVLLSNIYA  GRW +VA+ R L+  + +KK PG S IE++  VH F  G   H   +E
Sbjct: 543 SYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNRE 602

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I+  LE++     E G++P T  VL  ++EE KE AL  HSEKLA+AFGLI T PGT + 
Sbjct: 603 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 662

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           IVK L +C +CH   K  SKI +REI+ RD TRFH+F DG CSC
Sbjct: 663 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/642 (35%), Positives = 350/642 (54%), Gaps = 74/642 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I   +   N  K  +Q HAQI+LH L  ++ +  ++++  +    +D A+ +FD     +
Sbjct: 83  IFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPS 142

Query: 94  LHIFNVLIRGLAENSHFQSC---ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             ++N +IR    +         +  +  M  L +  +  T PFV KS A LS + +GR 
Sbjct: 143 SLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRC 202

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H   ++ G+E D +V   L DMYV+                                C 
Sbjct: 203 VHGQGLRVGLEGDFYVGASLIDMYVK--------------------------------CG 230

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
            IG  RK   LF  M  +++ASW +LI G+M++G++  A +LFE+M  + +VSWTAMI+G
Sbjct: 231 VIGDARK---LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISG 287

Query: 271 FSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           ++QNG AE+AL +F +ML  G  ++ N  T+VS L ACA+  ALE G R+H++ +     
Sbjct: 288 YTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH 347

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           L  ++ TAL  MYAKC ++  A   F    +  K+L+ W  MI   A HG   +A+  F+
Sbjct: 348 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
            M+ +G +PD   F+ +L+ C +SG +   LN F+ M   + +EP V+H+  VV+LL R 
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRA 467

Query: 447 GQ----------------------------DSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478
           G+                              +  + ++ +  +L  L+P +  +YVLLS
Sbjct: 468 GRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLS 527

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           N+YA  G W++V ++R L++ + +KK PG S+IE+NG  H F      H  AKEI+  LE
Sbjct: 528 NLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLE 587

Query: 537 DIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
            +    +  GY+P T +VLH+I +EEKE  L  HSEKLA+AFGL+ T PG  +++ K L 
Sbjct: 588 ALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLR 647

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ICGDCH+  K+ SKI +REI++RD  RFH FKDG+CSC DYW
Sbjct: 648 ICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/684 (33%), Positives = 367/684 (53%), Gaps = 76/684 (11%)

Query: 24   KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
            KP   +T  H++S   +S++    + IH  I+   + ++  +   L++      SI  A 
Sbjct: 483  KPGR-VTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQ 541

Query: 84   SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            ++F+    +++  +N +I G A++  +++    F+ M +  + P+++T+  V     +  
Sbjct: 542  NVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPE 601

Query: 144  LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
             L LGR +H LI++SG++ D  +   L +MY++ G  + A++VF     +N    V+ W 
Sbjct: 602  ALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRN----VMSWT 657

Query: 204  VLINGCSKIGYLRKAVELF------GMMPKKNVASWV----------------------- 234
             +I G +  G  RKA ELF      G  P K+  S +                       
Sbjct: 658  AMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNS 717

Query: 235  ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                      +LI  + + G +  A ++F++MP + ++SW  MI G++QNG    AL   
Sbjct: 718  GYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFA 777

Query: 285  FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +QM + GV  N F+ VS L+AC+   ALE G RVH  I          +G AL+ MYAKC
Sbjct: 778  YQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKC 837

Query: 345  GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            G++E A  VF    EK+++TW AMI   A HG   +A+ +F  M   G +PDG+ F +IL
Sbjct: 838  GSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSIL 897

Query: 405  TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN------- 455
            +AC +SG V      F S+   + + P+++H+  +V LL R G  Q+++   N       
Sbjct: 898  SACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPD 957

Query: 456  -------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                               ++++    L+L  ++P+ YVLLSN+YAA GRW DVA++R +
Sbjct: 958  AAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRV 1017

Query: 497  MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
            M+ R I+K+PG S+IEV+  +H F A    H    EI+ +L+ +       GY P T++V
Sbjct: 1018 MEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSPDTQYV 1077

Query: 555  LHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
            LHN+ KE +E +L  HSE+LA+A+GL++T PGT I+I K L ICGDCH+  K+ SK+  R
Sbjct: 1078 LHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFISKLVGR 1137

Query: 614  EIVLRDT-RFHYFKDGTCSCRDYW 636
            EI+ RD+ RFH FK+G CSC D+W
Sbjct: 1138 EIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 196/418 (46%), Gaps = 43/418 (10%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           IT   I++   S    +  ++IH++II        R+   L++     + +  A  +F  
Sbjct: 184 ITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSG 243

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              +++  +N ++   A+ ++ + CI  F  M    + P+++TY  +  +  + S+L  G
Sbjct: 244 IYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEG 303

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + +H L V  G+  D  V   LA M+V+ G   GA +  +   +++    V+++N LI  
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRD----VVVYNALIAA 359

Query: 209 CSKIGYLRKAVELFGMMPKKNV-----------------------------------ASW 233
            ++ G+  +A E +  M    V                                   +S 
Sbjct: 360 LAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSD 419

Query: 234 V----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           V    SLI  + R GDL +A ELF  MP++ ++SW A+I G+++  +  +A+ ++ QM  
Sbjct: 420 VQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS 479

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            GV+    T +  LSAC    A   G  +H  I  +     G +  AL++MY +CG+I  
Sbjct: 480 EGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIME 539

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A  VF  T+ +D+++W +MI G A HG YE A + F +M   G EPD   F ++L  C
Sbjct: 540 AQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGC 597



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/426 (23%), Positives = 190/426 (44%), Gaps = 43/426 (10%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P + +T  +++    + +   + ++IH   +   L +  R+ T L +       +  A  
Sbjct: 281 PPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQ 340

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
             + F  +++ ++N LI  LA++ H++     +  M    V  NR TY  V  + ++   
Sbjct: 341 ALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKA 400

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G  +H  I + G   D  +   L  MY + G    A ++F+  P+++    ++ WN 
Sbjct: 401 LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRD----LISWNA 456

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV------------------------------ 234
           +I G ++     +A++L+  M  + V                                  
Sbjct: 457 IIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSG 516

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L++ + R G + +A  +FE    + ++SW +MI G +Q+G  E A  +F 
Sbjct: 517 IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFL 576

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M   G+  +  T  S L  C    ALE G ++H  I  +   L   +G AL++MY +CG
Sbjct: 577 EMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCG 636

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           +++ A  VF   + +++++WTAMI G A  G   +A + F +M   G +P  + F +IL 
Sbjct: 637 SLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILK 696

Query: 406 ACWYSG 411
           AC  S 
Sbjct: 697 ACMSSA 702



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 189/404 (46%), Gaps = 43/404 (10%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S  + ++IHAQ++   +     ++  LI+     +S+  A  +F     +++  +N LI 
Sbjct: 97  SLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLIS 156

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
             A+    +     F  M      P+++TY  +  +  S + L  G+ +H  I+++G + 
Sbjct: 157 CYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQR 216

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D  V+  L +MY +      A +VF     ++    V+ +N ++   ++  Y+ + + LF
Sbjct: 217 DPRVQNSLLNMYGKCEDLPSARQVFSGIYRRD----VVSYNTMLGLYAQKAYVEECIGLF 272

Query: 223 GMMPKKNV----ASWVSLIDG-----------------------------------FMRK 243
           G M  + +     ++++L+D                                    F+R 
Sbjct: 273 GQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRC 332

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           GD+  A +  E   ++ VV + A+I   +Q+G  E+A   ++QM   GV  N  T +S L
Sbjct: 333 GDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVL 392

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           +AC+   AL AG  +H++IS         IG +L+ MYA+CG++  A  +F    ++DL+
Sbjct: 393 NACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLI 452

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +W A+I G A      +A++ +K+M   G +P    FL +L+AC
Sbjct: 453 SWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSAC 496



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/324 (25%), Positives = 148/324 (45%), Gaps = 46/324 (14%)

Query: 126 RP---NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           RP   NR  Y  + ++      L+  + +H  +V++GV  D F+   L +MYV+      
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------- 228
           A +VF + P ++    V+ WN LI+  ++ G+ +KA +LF      G +P K        
Sbjct: 136 AHQVFLKMPRRD----VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILT 191

Query: 229 ------------NVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                        + S +             SL++ + +  DL  A ++F  +  + VVS
Sbjct: 192 ACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVS 251

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           +  M+  ++Q    E+ + +F QM   G+  +  T ++ L A      L+ G R+H    
Sbjct: 252 YNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAV 311

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
                    +GTAL  M+ +CG++  A        ++D++ + A+I  LA HG YE+A +
Sbjct: 312 NEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFE 371

Query: 384 YFKKMMYSGTEPDGTVFLAILTAC 407
            + +M   G   + T +L++L AC
Sbjct: 372 QYYQMRSDGVVMNRTTYLSVLNAC 395


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/637 (36%), Positives = 352/637 (55%), Gaps = 60/637 (9%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPK 92
           +SL  + ++ +++ Q+HA  +   +F    ++++L++  S  K  D  YA SIFD    +
Sbjct: 20  LSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRR 79

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +L  +N +I+   EN      I  F  ++     P+  T P V K  A L ++  G+ +H
Sbjct: 80  SLIHWNTIIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIH 138

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
            L +K G   D FV+  L +MY + G+   A KVFD   +K+    V+LWN LI+G    
Sbjct: 139 GLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKD----VVLWNSLIDG---- 190

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                           N+ SW ++I+G+M+ GD   A ELF QMP   +V+W  MI G+ 
Sbjct: 191 ----------------NLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYE 234

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
            NG+   A+ MFF ML  G R +  T+VS LSA + +  L  G  +H+Y+  N F L G 
Sbjct: 235 LNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGI 294

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +GT+L++MYAKCG IE+A  VF   ++K +  WTA+I GL IHG    A+  F +M  +G
Sbjct: 295 LGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTG 354

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +P+  +F+ +L AC ++G V     +FD M  +Y IEP+++H+  +V++L R G   + 
Sbjct: 355 LKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEA 414

Query: 453 YQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAE 484
               +N                            +  +++++ P+    Y+LLSN+YAA 
Sbjct: 415 KNTIENMPISPNKVIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAAS 474

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGA 542
           G W+ V+ VR +M +R  +KDPG S +E  G +H F  G   H   KEI++K+ ++    
Sbjct: 475 GMWEKVSHVREMMYKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKL 534

Query: 543 REQGYMPGTEWVLHNIK--EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
           +  G++P T  VL  I+  +EKE  L  HSE+LA+AFGLI   PG  I+I+K L +C DC
Sbjct: 535 KCVGHVPDTTQVLLCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDC 594

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           HS+ K  SKI  REI++RD  RFH+FK+G+CSC DYW
Sbjct: 595 HSVTKLLSKIYSREIIVRDNCRFHHFKNGSCSCMDYW 631


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/665 (33%), Positives = 357/665 (53%), Gaps = 75/665 (11%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S +Q R++HA I+   +  +  +   L+S  +   S+  A  +FD    +N+  +  +I 
Sbjct: 111 SLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIE 170

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
                +        +  M     +P+++T+  +  +  +  LL +G+ +H  I K+G+E 
Sbjct: 171 AFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLEL 230

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           +  V   L  MY + G    A  +FD+ PEKN    V+ W +LI G ++ G +  A+EL 
Sbjct: 231 EPRVGTSLVGMYAKCGDISKAQVIFDKLPEKN----VVTWTLLIAGYAQQGQVDVALELL 286

Query: 223 GMMPKKNVAS-------------------------------------WV--SLIDGFMRK 243
             M +  VA                                      WV  +LI  + + 
Sbjct: 287 EKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKC 346

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G LK+A +LF  +P + VV+WTAM+ G++Q G  ++A+ +F +M   G++ +  T  SAL
Sbjct: 347 GGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSAL 406

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           ++C+    L+ G  +H  +    + L   + +ALV MYAKCG+++ A LVF +  E++++
Sbjct: 407 TSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVV 466

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            WTAMI G A HGR  +A++YF++M   G +PD   F ++L+AC + G V+     F SM
Sbjct: 467 AWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSM 526

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQN 455
             DY I+P V+H++  V+LL R G   +                              + 
Sbjct: 527 YLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVER 586

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
            + +   +L+L P    +YV LSNIYAA GR++D  +VR +M++R + K+PG S+IEV+G
Sbjct: 587 GERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDG 646

Query: 516 HVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKE-EALGCHSEK 572
            VH F  E   H  AKEI+++L  +    +EQGY+P T +VLH++ EE++ + L  HSE+
Sbjct: 647 KVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSER 706

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCS 631
           LA+ +GL++T PGT I+IVK L +CGDCH+  K+ SK+  REI+ RD  RFH+F DG CS
Sbjct: 707 LAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCS 766

Query: 632 CRDYW 636
           C D+W
Sbjct: 767 CGDFW 771



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 152/308 (49%), Gaps = 39/308 (12%)

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           +  A L  L  GR +H  I+KSG++ + ++   L  MY + G    A +VFD   ++N  
Sbjct: 104 QECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIV 163

Query: 197 ESVLLWNVLINGCSKIGYLR--KAVELFGMMPKKNVASWVSLIDGFM------------- 241
               +    + G   +   +  + ++L G  P K   ++VSL++ F              
Sbjct: 164 SWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK--VTFVSLLNAFTNPELLQVGQKVHM 221

Query: 242 ----------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                                 + GD+ KA  +F+++PEK VV+WT +I G++Q G+ + 
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           AL +  +M  A V  N  T  S L  C    ALE G +VH YI  + +G +  +  AL+ 
Sbjct: 282 ALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALIT 341

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG ++ A  +FG+   +D++TWTAM+ G A  G +++AI  F++M   G +PD   
Sbjct: 342 MYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMT 401

Query: 400 FLAILTAC 407
           F + LT+C
Sbjct: 402 FTSALTSC 409



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 185/408 (45%), Gaps = 50/408 (12%)

Query: 35  ISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL+++  + + L+   ++H +I    L    R+ T L+   +    I  A  IFD    
Sbjct: 201 VSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPE 260

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           KN+  + +LI G A+       +     M +  V PN++TY  + +   +   L  G+ +
Sbjct: 261 KNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKV 320

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I++SG   + +V   L  MY + G  + A K+F + P ++    V+ W  ++ G ++
Sbjct: 321 HRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRD----VVTWTAMVTGYAQ 376

Query: 212 IGYLRKAVELF------GMMPKK---------------------------------NVAS 232
           +G+  +A++LF      G+ P K                                 +V  
Sbjct: 377 LGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYL 436

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +L+  + + G +  A  +F QM E+ VV+WTAMI G +Q+G   +AL  F QM   G+
Sbjct: 437 QSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGI 496

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EA 349
           + +  T  S LSAC  VG +E G R H      D+G+K  +   +  VD+  + G++ EA
Sbjct: 497 KPDKVTFTSVLSACTHVGLVEEG-RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEA 555

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
            +++     +     W A++    IH   E+  +  + ++    + DG
Sbjct: 556 ENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDG 603



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 146/307 (47%), Gaps = 16/307 (5%)

Query: 205 LINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           L+  C+++  L +  E+       G+ P + + +  +L+  + + G L  A  +F+ + +
Sbjct: 102 LLQECARLRSLEQGREVHAAILKSGIQPNRYLEN--TLLSMYAKCGSLTDARRVFDGIRD 159

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + +VSWTAMI  F    +  +A   +  M  AG + +  T VS L+A      L+ G +V
Sbjct: 160 RNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H  I+     L+  +GT+LV MYAKCG+I  A ++F +  EK+++TWT +I G A  G+ 
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           + A++  +KM  +   P+   + +IL  C       LAL     +   Y I+        
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGC----TTPLALEHGKKVH-RYIIQSGYGREIW 334

Query: 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
           VVN L  +     G + ++  F  L     +   ++  +   YA  G   +   +   MQ
Sbjct: 335 VVNALITMYCKCGGLKEARKLFGDLPH---RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQ 391

Query: 499 RRSIKKD 505
           ++ IK D
Sbjct: 392 QQGIKPD 398



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 157/372 (42%), Gaps = 17/372 (4%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           ++  A+     ++ +    N IT T I+    +  + +  +++H  II         +  
Sbjct: 278 QVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVN 337

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI+       +  A  +F     +++  +  ++ G A+       I  F  M +  ++P
Sbjct: 338 ALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKP 397

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +++T+     S +S + L  G+ +H  +V +G   D +++  L  MY + G    A  VF
Sbjct: 398 DKMTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRK 243
           ++  E+N    V+ W  +I GC++ G  R+A+E F  M K+ +     ++ S++      
Sbjct: 458 NQMSERN----VVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHV 513

Query: 244 GDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G +++  + F  M      +  V  ++  ++   + G  E+A  +   M     +     
Sbjct: 514 GLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTM---PFQPGPSV 570

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
             + LSAC     +E G R    +   D    GA   AL ++YA  G  E A  V    +
Sbjct: 571 WGALLSACRIHSDVERGERAAENVLKLDPDDDGAY-VALSNIYAAAGRYEDAEKVRQVME 629

Query: 359 EKDLLTWTAMIW 370
           ++D++      W
Sbjct: 630 KRDVVKEPGQSW 641



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 106/222 (47%), Gaps = 11/222 (4%)

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
             + G  ++AL +   M+  G R         L  CA++ +LE G  VH  I  +     
Sbjct: 71  LCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPN 130

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +   L+ MYAKCG++  A  VF   +++++++WTAMI       +  +A + ++ M  
Sbjct: 131 RYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKL 190

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNF-FDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
           +G +PD   F+++L A      +++      +  +    +EP V   T +V + ++ G  
Sbjct: 191 AGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TSLVGMYAKCGDI 248

Query: 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
           S+    +Q  F KL +   K+  ++ LL   YA +G+  DVA
Sbjct: 249 SK----AQVIFDKLPE---KNVVTWTLLIAGYAQQGQ-VDVA 282


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/635 (35%), Positives = 343/635 (54%), Gaps = 71/635 (11%)

Query: 38  IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           + + +    L+ IHA +I    + ++FA+SR+    +  +S    IDYA  IF      N
Sbjct: 24  LETCSDLTHLKIIHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPN 83

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           L IFN +IRG + + +       +V   R  + P+ LT+PF+ KS   L  +S+G   H 
Sbjct: 84  LFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGSQAHG 143

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            I+K G E D +V+  L  MY   G T  A  +F    ++     V+ W  +I G +K G
Sbjct: 144 HIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIF----QRMYYVDVVSWTSMIRGFNKCG 199

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
            +  A +LF  MP+KN+ +W ++I G+ +     KA ELF+ +  +              
Sbjct: 200 DVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQ-------------- 245

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
                            GVRAN+  +VS +S+CA +GALE G R H+Y+  N   L   +
Sbjct: 246 -----------------GVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLIL 288

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
           GTALVDMYA+CG+I+ A  VF +  E+D L+WTA+I GLA+HG  E++++YF  M+ +G 
Sbjct: 289 GTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGL 348

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG- 452
            P    F A+L+AC + G V+     F+SM+ D+ +EP ++H+  +V+LL R G+  +  
Sbjct: 349 TPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAE 408

Query: 453 ------------------------YQNS---QNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
                                   ++N+   +     L+QL P+H   YVLLSNIYA   
Sbjct: 409 RFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAK 468

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR 543
            W+ V  +R +M+ + +KK PG S IE++G VH+F  G   H    +I    E+I+   R
Sbjct: 469 EWEKVTEMRQMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIR 528

Query: 544 EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
             GY   T   L +I +EEKE AL  HSEKLA+AFG++++  GT I+IVK L +C DCH+
Sbjct: 529 AAGYRGNTADALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHT 588

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             K  SK+  RE+++RD  RFH+F+ G CSC DYW
Sbjct: 589 ATKLISKVFGRELIVRDRNRFHHFRQGLCSCMDYW 623


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 232/639 (36%), Positives = 349/639 (54%), Gaps = 56/639 (8%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
           +  I +  S ++L+Q+HA ++       + I T+++  S+ S  + I YALS+FD    +
Sbjct: 19  VPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPER 78

Query: 93  NLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
           N   +N +IR LAE  + H  + +     +   +V PN+ T+P V K+ A ++ L+ G+ 
Sbjct: 79  NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQ 138

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H L++K G+  D FV  +L  MYV  G    A  +F    E             ++   
Sbjct: 139 VHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEG------------VDDVR 186

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
            +    +  E        NV     ++DG+ R G+LK A ELF++M ++ VVSW  MI+G
Sbjct: 187 NLVRDERGREF-------NVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISG 239

Query: 271 FSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           ++QNG  ++A+ +F +M+  G V  N  T+VS L A +++G LE G  VH Y   N   +
Sbjct: 240 YAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRI 299

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +G+ALVDMYAKCG+IE A  VF    + +++TW A+I GLA+HG+      Y  +M 
Sbjct: 300 DDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRME 359

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
             G  P    ++AIL+AC ++G V    +FF+ M     ++P ++H+  +V+LL R G  
Sbjct: 360 KCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYL 419

Query: 450 SQGYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIY 481
            +  +   N   K                            L+Q+ P    +YV LSN+Y
Sbjct: 420 EEAEELILNMPMKPDDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMY 479

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIM 539
           A+ G W  VA VR +M+   I+KDPG S+IE++G +H F  E   H  AK+IHS LE+I 
Sbjct: 480 ASSGNWDGVAAVRLMMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEIS 539

Query: 540 AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
                +G+MP T  VL  + E+ KE  L  HSEK+A+AFGLI T P T + IVK L IC 
Sbjct: 540 NKLSLEGHMPDTTQVLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICE 599

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCHS MK  SK+ +R+IV+RD  RFH+F+ G+CSC DYW
Sbjct: 600 DCHSSMKLISKMYERKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 229/676 (33%), Positives = 350/676 (51%), Gaps = 78/676 (11%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +S+I +  S   L   R++H  II     +   + T L S  +   S++ A  +FD    
Sbjct: 124 LSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPK 183

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +++  +N +I G ++N      ++ F  M    ++PN  T   V    A L  L  G+ +
Sbjct: 184 RDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI 243

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HC  ++SG+E D  V   L +MY + G    A K+F+  P ++    V  WN +I G S 
Sbjct: 244 HCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRD----VASWNAIIGGYSL 299

Query: 212 IGYLRKAVELFGMMP----KKNVASWVS-------------------------------- 235
                +A+  F  M     K N  + VS                                
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVV 359

Query: 236 ---LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
              L++ + + G++  A +LFE+MP+K VV+W A+I+G+SQ+G   +ALA+F +M   G+
Sbjct: 360 GNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGI 419

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + + F +VS L ACA   ALE G ++H Y   + F     +GT LVD+YAKCGN+  A  
Sbjct: 420 KPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQK 479

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F    E+D+++WT MI    IHG  E A+  F KM  +GT+ D   F AILTAC ++G 
Sbjct: 480 LFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGL 539

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------- 452
           V   L +F  M+ DY + P ++H+  +V+LL R G   +                     
Sbjct: 540 VDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALL 599

Query: 453 --------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    +  + +   L +L P +   YVLLSNIYA   RW+DVA++R +M+ + +KK
Sbjct: 600 GACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKK 659

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE- 561
            PG S + V+  V  F  G   H  +++I++ LE +    R+ GY+P T   L +++EE 
Sbjct: 660 QPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEA 719

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE  L  HSEKLA++FG+I T+PG  I+I+K L +C DCH+  K+ SKI  REI++RD  
Sbjct: 720 KENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDAN 779

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+ K+G CSC DYW
Sbjct: 780 RFHHVKNGFCSCGDYW 795



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 214/457 (46%), Gaps = 61/457 (13%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N  ++   I G  +N  +   +  +  M R  + P++L +  V K+  S S L  GR +H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             I+  G E D  V   LA MY + G    A +VFD  P+++    V+ WN +I G S+ 
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRD----VVSWNAIIAGYSQN 199

Query: 213 GYLRKAVELFGMMP----KKNVASWVS--------------------------------- 235
           G   +A+ LF  M     K N ++ VS                                 
Sbjct: 200 GQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVV 259

Query: 236 --LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             L++ + + G++  A +LFE+MP + V SW A+I G+S N +  +ALA F +M   G++
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIK 319

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  T+VS L ACA + ALE G ++H Y   + F     +G ALV+MYAKCGN+ +A  +
Sbjct: 320 PNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKL 379

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F    +K+++ W A+I G + HG   +A+  F +M   G +PD    +++L AC +    
Sbjct: 380 FERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHF--- 436

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469
            LAL     +   Y I    + + VV    V++ ++ G        + N+  KL +  P+
Sbjct: 437 -LALEQGKQIH-GYTIRSGFESNVVVGTGLVDIYAKCG--------NVNTAQKLFERMPE 486

Query: 470 HP-SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
               S+  +   Y   G  +D   + + MQ    K D
Sbjct: 487 QDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLD 523


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/639 (34%), Positives = 353/639 (55%), Gaps = 77/639 (12%)

Query: 35  ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSI-DYALSIFDHF 89
           +S + S  +   L+ IHA +I    + ++FA+S      + S S++K++ DYA  +F   
Sbjct: 19  LSFLESCTTLSHLKIIHAHLIRAHTIFDVFAAS-----CLISISINKNLLDYAAQVFYQI 73

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
              NL I+N  IRG + +         +V   R  + P+ LTYPF+ K+      L +G 
Sbjct: 74  QNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGI 133

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
             H  I++ G + D +V+  L  MY                                   
Sbjct: 134 QAHGQIIRHGFDSDVYVQNSLVTMY----------------------------------- 158

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
           S +G ++ A  +F  +   +V SW S++ G+++ GD+  A +LF++MPEK +V+W+ MI+
Sbjct: 159 STLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMIS 218

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+++N   +KA+ ++F +   GV AN+  +VS +++CA +GALE G R H+YI  N   +
Sbjct: 219 GYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTV 278

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +GTALVDMYA+CG+I+ A  VF +   +D L+WT +I G A+HG  E+A++YF +M 
Sbjct: 279 NLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRME 338

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
            +G  P    F A+L+AC + G V+  L  F+SM+ DY IEP ++H+  +V+LL R G+ 
Sbjct: 339 KAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKL 398

Query: 450 SQG-------------------------YQNSQ---NSFTKLLQLKPKHPSSYVLLSNIY 481
           ++                          ++NS+    +   L++LKP+H   YVLLSNIY
Sbjct: 399 AEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIY 458

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A   +W++V  +R +M+ R + K PG++  E++G VH+F  G   H   ++I    E+I+
Sbjct: 459 ARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEIL 518

Query: 540 AGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              R  GY    +  L +I +EEKE  +  HSEKLA+A+ +++T     I+IVK L +C 
Sbjct: 519 GKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCE 578

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCH+  K  SK+ +RE+++RD  RFH+FK G CSC DYW
Sbjct: 579 DCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 116/296 (39%), Gaps = 47/296 (15%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDY-- 81
           +N+T   ++       S     Q H QII H   +   +   L++  S     KS  Y  
Sbjct: 112 DNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVF 171

Query: 82  --------------------------ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
                                     A  +FD    KNL  ++V+I G A+NS F   I 
Sbjct: 172 RRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIE 231

Query: 116 HFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
            +  +    V  N      V  S A L  L LG   H  I+++ +  +  +   L DMY 
Sbjct: 232 LYFLLQSEGVHANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYA 291

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---- 231
           + G    A  VFD+ P ++     L W  LI G +  GY  KA+E F  M K  +     
Sbjct: 292 RCGSIDKAIWVFDQLPGRD----ALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREI 347

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNG---EAEK 279
           ++ +++      G +++  ELFE M      E  +  +  M++   + G   EAEK
Sbjct: 348 TFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEK 403


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/642 (33%), Positives = 357/642 (55%), Gaps = 75/642 (11%)

Query: 35  ISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSID---YALSIFD 87
           ++L+ S +S   L+ IH  ++    + ++F +SR+    +  ++ +K  +   YA  IF 
Sbjct: 16  LALLQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFS 75

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
                NL +FN+LIR  +  +        +  ML+  + P+ +T+PF+ K+ + +  + +
Sbjct: 76  QIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLV 135

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G   H  IV+ G + D +V   L  MY                                 
Sbjct: 136 GEQTHSQIVRFGFQNDVYVENSLVHMY--------------------------------- 162

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
             +  G++  A  +FG M  ++V SW S++ G+ + G ++ A E+F++MP + + +W+ M
Sbjct: 163 --ANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIM 220

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           ING+++N   EKA+ +F  M   GV AN+  +VS +S+CA +GALE G R + Y+  +  
Sbjct: 221 INGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHM 280

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
            +   +GTALVDM+ +CG+IE A  VF    E D L+W+++I GLA+HG   +A+ YF +
Sbjct: 281 TVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ 340

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M+  G  P    F A+L+AC + G V+  L  +++M+ D+ IEP ++H+  +V++L R G
Sbjct: 341 MISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAG 400

Query: 448 QDSQG-------------------------YQNSQNS---FTKLLQLKPKHPSSYVLLSN 479
           + ++                          Y+N++ +      L+++KP+H   YVLLSN
Sbjct: 401 KLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSN 460

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLE 536
           IYA  G+W  +  +R +M+ + +KK PGWS IE++G +++F  G    H    +I  K E
Sbjct: 461 IYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWE 520

Query: 537 DIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
           +I+   R  GY   T     ++ +EEKE ++  HSEKLA+A+G+++T PGTTI+IVK L 
Sbjct: 521 EILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLR 580

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +C DCH++ K  S++  RE+++RD  RFH+F++G CSCRDYW
Sbjct: 581 VCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRDYW 622


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/672 (33%), Positives = 359/672 (53%), Gaps = 76/672 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           SL+  S   + L QIHAQ+++  L  S  + T+ ++++     I YA  +FD F   ++ 
Sbjct: 76  SLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVF 135

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N +IRG + ++ F   I  +  M    V P+  T P V K+ + + +L +G+ +H  I
Sbjct: 136 LWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQI 195

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            + G E D FV+  L  +Y + G+   A  VF+   ++N    ++ W  +I+G  + G  
Sbjct: 196 FRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRN----IVSWTSMISGYGQNGLP 251

Query: 216 RKAVELFGMMPKKNV-ASWVSLID------------------------------------ 238
            +A+ +FG M ++NV   W++L+                                     
Sbjct: 252 MEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISL 311

Query: 239 --GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
              + + G +  A   F+QM    V+ W AMI+G+++NG   +A+ +F +M+   +R + 
Sbjct: 312 TAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDS 371

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            TV SA+ ACA+VG+L+    + +YI+  ++     + TAL+DM+AKCG+++ A  VF  
Sbjct: 372 ITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDR 431

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           T +KD++ W+AMI G  +HGR + AI  F  M  +G  P+   F+ +LTAC +SG V+  
Sbjct: 432 TLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEG 491

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------------- 455
              F SM++ Y IE   +H+  VV+LL R G  ++ Y                       
Sbjct: 492 WELFHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACK 550

Query: 456 -------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                   + +  +L  L P +   YV LSN+YA+   W  VA+VR LM+ + + KD G+
Sbjct: 551 IYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGY 610

Query: 509 SYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEA 565
           S IE+NG +  F  G   H   KEI  +LE +    +E G++P  E VLH++ +EEKEE 
Sbjct: 611 SLIEINGKLQAFRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEET 670

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHY 624
           L  HSE+LA+A+GLI T PGTT++I K L  C +CHS  K  SK+  REIV+RD  RFH+
Sbjct: 671 LCNHSERLAIAYGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHH 730

Query: 625 FKDGTCSCRDYW 636
           FK+G CSCRDYW
Sbjct: 731 FKNGVCSCRDYW 742


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 250/683 (36%), Positives = 356/683 (52%), Gaps = 110/683 (16%)

Query: 53  QIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
           +I LHN  +A S++    I +   H  + YA+S+F      N   +N +IRG A +S   
Sbjct: 2   KIGLHNTNYALSKLLDFCILTPYFH-GLPYAISVFKSIQEPNQLSWNTMIRGHALSSDPI 60

Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
           S ++ +V+M+ L + PN  T+PF+ KS A       G+ +H  I+K G+  D  V   L 
Sbjct: 61  SALNLYVYMISLGLSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLI 120

Query: 172 DMYVQLGKTRGAFKVFDETPEKN---------------------------KSESVLLWNV 204
            MY Q G    A KVFD +  ++                             + V+ WN 
Sbjct: 121 SMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNA 180

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVA--------------------------SWV---- 234
           +I+G ++IG  ++A+ELF  M K +V                           SW+    
Sbjct: 181 MISGYAEIGRYKEALELFNEMMKMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHG 240

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +LID + + G++++A  LFE +  K V+SW  +I G++     ++AL +F 
Sbjct: 241 FGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQ 300

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-----TALVDM 340
           +ML  G   ND T++S L ACA +GA++ G  +H YI   D  LKG I      T+L+DM
Sbjct: 301 EMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYI---DKKLKGIITNTSLQTSLIDM 357

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAKCGNIEAA+ VF     K L +  AMI+G A+HGR + A     +M   G EPD   F
Sbjct: 358 YAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITF 417

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460
           + +L+AC ++G   L    F SM  DY IEP ++H+  +++LL R G   +  +   NS 
Sbjct: 418 VGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEA-EELINSM 476

Query: 461 T-----------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
           T                             KL++++PK+P SYVLLSNIYA   RW DVA
Sbjct: 477 TMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSARWDDVA 536

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
           RVRTL+  + +KK PG S IE++  VH F  G   H   KEI+  LE+I +   E G++ 
Sbjct: 537 RVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAETGFVS 596

Query: 550 GTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T  VL  ++EE KE AL  HSEKLA+AFGLI T PGT ++IVK L +C +CH   K  S
Sbjct: 597 DTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEATKLIS 656

Query: 609 KISQREIVLRD-TRFHYFKDGTC 630
           KI +REI+ RD +RFH+FKDG C
Sbjct: 657 KIYKREIIARDRSRFHHFKDGMC 679


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/683 (33%), Positives = 356/683 (52%), Gaps = 75/683 (10%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           PS+      I +LI  +++   L+Q+H  +I H+L   + +   L+      +   Y+  
Sbjct: 7   PSSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFL 66

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F H    N+ ++N LI G   N  F   +  F+ + +  +  +  T+P V K+    S 
Sbjct: 67  LFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASN 126

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             LG  LH L+VK G  +D      L  +Y   G+   A KVF+E PE+    SV+ W  
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPER----SVVTWTA 182

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV-------- 234
           L +G +  G  R+A++LF  M +  V                        W+        
Sbjct: 183 LFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEME 242

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L++ + + G ++KA  +F+ M EK +V+W+ MI G++ N   ++ +  F 
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFL 302

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QML   ++ + F++V  LS+CA +GAL+ G    + I  ++F     +  AL+DMYAKCG
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCG 362

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +     VF E KEKD++   A I GLA +G  + +   F +    G  PDG+ FL +L 
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLC 422

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------ 453
            C ++G ++  L FF+++   Y ++ +V+H+  +V+L  R G     Y            
Sbjct: 423 GCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482

Query: 454 ----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                           Q ++    +L+ L+P +  +YV LSNIY+  GRW + A VR +M
Sbjct: 483 IVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMM 542

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
            R+ +KK PG+S+IE+ G VH F A    H L+ +I++KLED+    R  G++P TE+V 
Sbjct: 543 NRKGMKKIPGYSWIELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVF 602

Query: 556 HNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
            +++ EEKE  LG HSEKLA+AFGLI T  G  I++VK L +CGDCH +MK  SKI++RE
Sbjct: 603 FDVEDEEKERVLGHHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRRE 662

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           IV+RD  RFH F +G+CSC DYW
Sbjct: 663 IVVRDNNRFHCFTNGSCSCNDYW 685


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 242/725 (33%), Positives = 373/725 (51%), Gaps = 106/725 (14%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           PT    ++ + SN  T   +  LI    + K L+Q+HA ++   LF      T+L ++ +
Sbjct: 17  PTILTANNEQKSNPST---VPILIDKCANKKHLKQLHAHMLRTGLFFDPPSATKLFTACA 73

Query: 75  LHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLT 131
           L    S+DYA  +FD     NL+ +N LIR  A +      +  F+ ML  S R PN  T
Sbjct: 74  LSSPSSLDYACKVFDQIPRPNLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYT 133

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR---VH----LADM----------- 173
           +PFV K+   +S L  G+ +H +++K+    D F+    +H    L D+           
Sbjct: 134 FPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIV 193

Query: 174 -------------YVQLGKTRGAFKVFDETPEKNKSES---------------------- 198
                        +VQ G    A ++F     +N   +                      
Sbjct: 194 EKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRW 253

Query: 199 -------------VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
                        ++L N +++   K G L  A  LF  M +K++ SW ++IDG+ + GD
Sbjct: 254 ACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGD 313

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALS 304
              A  +F+ MP + + +W A+I+ + QNG+ ++ALA+F ++ L+   + N+ T+ S L+
Sbjct: 314 YDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLA 373

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA++GA++ G  +H YI      L   I T+L+DMY+KCG++E A  VF   + +D+  
Sbjct: 374 ACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFV 433

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W+AMI GLA+HG    AI  F KM  +  +P+   F  +L AC +SG V     FF+ MR
Sbjct: 434 WSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMR 493

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---S 456
             Y + P  KH+  +V++L R G   +                          Y N   +
Sbjct: 494 PVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELA 553

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           + + ++LL+    +  +YVLLSNIYA  G+W  V+R+R  M+   ++K+PG S IEVNG 
Sbjct: 554 EMACSRLLETDSNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGI 613

Query: 517 VHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEK 572
           +H F  G   H L+ EI+SKL++I+A  +  GY+     +L  ++EE  KE AL  HSEK
Sbjct: 614 IHEFLVGDNSHPLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEK 673

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCS 631
           LA+A+GLI+  P   I+IVK L +CGDCHS+ K  SK+  R+I+LRD  RFH+F  G CS
Sbjct: 674 LAIAYGLIRMEPSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCS 733

Query: 632 CRDYW 636
           C DYW
Sbjct: 734 CMDYW 738


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/678 (33%), Positives = 362/678 (53%), Gaps = 74/678 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           +++   SLI S+    QL+QIHA++++  L  S  + T+LI ++S    I +A  +FD  
Sbjct: 20  SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
               +  +N +IRG + N+HFQ  +  +  M    V P+  T+P + K+ + LS L +GR
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  + + G + D FV+  L  +Y +  +   A  VF+  P   ++  ++ W  +++  
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197

Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
           ++ G   +A+E+F  M K +V   WV+L+   + F    DLK                  
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                      K G+      LF++M    ++ W AMI+G+++NG A +A+ MF +M++ 
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            VR +  ++ SA+SACA+VG+LE    ++ Y+  +D+     I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
            LVF  T ++D++ W+AMI G  +HGR  +AI  ++ M   G  P+   FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------- 455
           G V+    FF+ M  D+ I P  +H+  V++LL R G   Q Y+                
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 456 -------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                         + +  +L  + P +   YV LSN+YAA   W  VA VR  M+ + +
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK- 559
            KD G S++EV G +  F  G   H   +EI  ++E I +  +E G++   +  LH++  
Sbjct: 557 NKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EE EE L  HSE++A+A+GLI T  GT ++I K L  C +CH+  K  SK+  REIV+RD
Sbjct: 617 EEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRD 676

Query: 620 T-RFHYFKDGTCSCRDYW 636
           T RFH+FKDG CSC DYW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 230/722 (31%), Positives = 378/722 (52%), Gaps = 103/722 (14%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
           N  + ++P+ N   +  ISLI    S +QL+Q H  +I    F+     ++L + A+L  
Sbjct: 17  NFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSS 76

Query: 78  --SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
             S++YA  +FD     N   +N LIR  A        I  F+ M+  S   PN+ T+PF
Sbjct: 77  FASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPF 136

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDA----------------------FVRVHLAD 172
           + K+ A +S LSLG+ LH + VKS V  D                       F  +   D
Sbjct: 137 LIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKD 196

Query: 173 M---------YVQLGKTRGAFKVFDETP-------------------------------- 191
           +         +VQ G    A ++F +                                  
Sbjct: 197 VVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCS 256

Query: 192 --EKNK-SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
             E+N+ + ++ L N +++  +K G +  A  LF  M +K+  +W +++DG+    D + 
Sbjct: 257 YIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEA 316

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA 307
           A E+   MP+K +V+W A+I+ + QNG+  +AL +F ++ L   ++ N  T+VS LSACA
Sbjct: 317 AREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACA 376

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +VGALE G  +H+YI  +   +   + +AL+ MY+KCG++E +  VF   +++D+  W+A
Sbjct: 377 QVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSA 436

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           MI GLA+HG   +A+  F KM  +  +P+G  F  +  AC ++G V  A + F  M  +Y
Sbjct: 437 MIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNY 496

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNS 459
            I P  KH+  +V++L R G   +  +                             ++ +
Sbjct: 497 GIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMA 556

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
            T+LL+L+P++  ++VLLSNIYA  G+W++V+ +R  M+   +KK+PG S IE++G +H 
Sbjct: 557 CTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHE 616

Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLAL 575
           F +G   H ++++++ KL ++M   +  GY P    VL  I+EE  KE++L  HSEKLA+
Sbjct: 617 FLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAI 676

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD 634
            +GLI T     I+++K L +CGDCHS+ K  S++  REI++RD  RFH+F++G CSC D
Sbjct: 677 CYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCND 736

Query: 635 YW 636
           +W
Sbjct: 737 FW 738


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 248/695 (35%), Positives = 359/695 (51%), Gaps = 114/695 (16%)

Query: 51  HAQII---LHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           HAQ++   LHN  +A S++    + S      + YA+S+F+     NL I+N ++RGLA 
Sbjct: 2   HAQMVKTGLHNTNYALSKLLELCVVSPHF-DGLPYAVSVFETXQEPNLLIWNTMLRGLAS 60

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           +S   S +  +V M+     PN  T+PF+ KS A       GR +H  ++K G E D + 
Sbjct: 61  SSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYA 120

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KSESV 199
              L  MY + G+   A KVFD + +++                               V
Sbjct: 121 HTSLISMYARNGRLEDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDV 180

Query: 200 LLWNVLING-CSKIGYLRKAVELFGMMPKKNV---------------------------- 230
           + WN +I G     GY  +A+ELF  M + NV                            
Sbjct: 181 VSWNAMITGYVENCGY-EEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHT 239

Query: 231 --------ASWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                    S + +++ F+    + GD++ A  LFE +  K VVSW  +I G++     +
Sbjct: 240 LVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYK 299

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-----AI 333
           +AL +F +ML +G   ND T++S L ACA +GA++ G  +H YI   D  LKG     A+
Sbjct: 300 EALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDIGRWIHVYI---DKRLKGVTNGSAL 356

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
            T+L+DMYAKCG+IEAA  VF     K L +W AMI+G A+HGR   A   F +M  +G 
Sbjct: 357 RTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGI 416

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ-- 451
           EPD    + +L+AC +SG + L  + F S+  DY I P ++H+  +++LL   G   +  
Sbjct: 417 EPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAE 476

Query: 452 -------------------------GYQNSQNSFT-KLLQLKPKHPSSYVLLSNIYAAEG 485
                                    G      SF  KL++++P++  SYVLLSNIYA  G
Sbjct: 477 EIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAG 536

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAR 543
           RW+DVAR+R ++  + +KK PG S IE++  VH F  G   H  ++EI+  LE++     
Sbjct: 537 RWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLE 596

Query: 544 EQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
           E G++P T  VL  ++EE KE AL  HSEKLA+AFGLI T PGT + +VK L +C +CH 
Sbjct: 597 EAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHE 656

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             K  SKI +REIV RD TRFH+F+DG CSC DYW
Sbjct: 657 ATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 132/310 (42%), Gaps = 26/310 (8%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS-RITTQLISSASLHK 77
           ++++ +P    T   ++S    S S +  R+IH  +  H+ F SS +I    I   S   
Sbjct: 207 MRTNVRPDEG-TLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCG 265

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            ++ A  +F+  + K++  +N LI G    + ++  +  F  MLR    PN +T   V  
Sbjct: 266 DVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 325

Query: 138 SVASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
           + A L  + +GR +H  I K   GV   + +R  L DMY + G    A +VF+    K+ 
Sbjct: 326 ACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSL 385

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
           S     WN +I G +  G    A +LF  M K  +     + V L+      G L     
Sbjct: 386 SS----WNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRH 441

Query: 252 LFEQMPEKGVVS-----WTAMINGFSQNG---EAEKALAMFFQMLDAGVRANDFTVVSAL 303
           +F+ + +   ++     +  MI+     G   EAE+ + M     D  +        S L
Sbjct: 442 IFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWC------SLL 495

Query: 304 SACAKVGALE 313
            AC   G LE
Sbjct: 496 KACKMHGNLE 505


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 245/665 (36%), Positives = 357/665 (53%), Gaps = 114/665 (17%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           + YA S+F+     N  I+N +IRG A +S   S ++ +V M+ L + PN  T+PF+ KS
Sbjct: 14  LPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKS 73

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ---------------------- 176
            A     + G+ +H  ++K G + D +V   L  MYVQ                      
Sbjct: 74  CAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSY 133

Query: 177 ---------LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
                     G  R A K+FDE P K+    V+ WN +I+G ++ G  ++A+ELF  M K
Sbjct: 134 TALITGYASRGDIRSAQKLFDEIPVKD----VVSWNAMISGYAETGCYKEALELFEEMMK 189

Query: 228 KNVA--------------------------SWV-------------SLIDGFMRKGDLKK 248
            NV                           SWV             +LID + + G+++ 
Sbjct: 190 MNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  LF+ +  K V+SW  +I G++     ++AL +F +ML +G   ND T++S L ACA 
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309

Query: 309 VGALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           +GA++ G  +H YI   D  LKG     ++ T+L+DMYAKCG+IEAA  VF     K L 
Sbjct: 310 LGAIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLS 366

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +W AMI+G A+HGR + +   F +M   G EPD   F+ +L+AC +SG + L  + F SM
Sbjct: 367 SWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSM 426

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQN----------------------- 458
             DY + P ++H+  +++LL   G  ++++   N+                         
Sbjct: 427 TQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVEL 486

Query: 459 --SFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
             SF + L++++P++PSSY+LLSNIYA+ GRW+DVAR+R L+  + +KK PG S IEV+ 
Sbjct: 487 AESFAQNLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDS 546

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEK 572
            V  F  G   H   +EI+  LE++     E G++P T  VL  ++EE KE AL  HSEK
Sbjct: 547 VVFEFVVGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEK 606

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AFGLI T PGT + IVK L +C +CH   K  SKI +REIV RD TRFH+F+DG CS
Sbjct: 607 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCS 666

Query: 632 CRDYW 636
           C DYW
Sbjct: 667 CNDYW 671


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 226/678 (33%), Positives = 362/678 (53%), Gaps = 74/678 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           +++   SLI S+    QL+QIHA++++  L  S  + T+LI ++S    I +A  +FD  
Sbjct: 20  SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
               +  +N +IRG + N+HFQ  +  +  M    V P+  T+P + K+ + LS L +GR
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  + + G + D FV+  L  +Y +  +   A  VF+  P   ++  ++ W  +++  
Sbjct: 140 FVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT--IVSWTAIVSAY 197

Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLK------------------ 247
           ++ G   +A+E+F  M K +V   WV+L+   + F    DLK                  
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEP 257

Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                      K G+      LF++M    ++ W AMI+G+++NG A +A+ MF +M++ 
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINK 317

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            VR +  ++ SA+SACA+VG+LE    ++ Y+  +D+     I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
            LVF  T ++D++ W+AMI G  +HGR  +AI  ++ M   G  P+   FL +L AC +S
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------- 455
           G V+    FF+ M  D+ I P  +H+  V++LL R G   Q Y+                
Sbjct: 438 GMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 456 -------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                         + +  +L  + P +   YV LSN+YAA   W  VA VR  M+ + +
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK- 559
            KD G S++EV G +  F  G   H   +EI  ++E I +  +E G++   +  LH++  
Sbjct: 557 NKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EE EE L  HSE++A+A+GLI T  GT ++I K L  C +CH+  K  SK+  REIV+RD
Sbjct: 617 EEAEETLCSHSERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRD 676

Query: 620 T-RFHYFKDGTCSCRDYW 636
           T RFH+FKDG CSC DYW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/613 (37%), Positives = 334/613 (54%), Gaps = 84/613 (13%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE-----NSHFQSCISHFVF 119
           + T+LISS   H ++ ++    + F      ++N LIR   +          S IS FV 
Sbjct: 3   LPTRLISST--HPTLHFSHPTLESF------LWNTLIRAHVQARAQPTGPTHSPISIFVR 54

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M    V+P+  T+PF+ +S AS SLL LGR +H  I++ G+  D FV+  L  MY   G 
Sbjct: 55  MRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGN 114

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
              A +VFDE                                   +P+ ++ SW S+I+ 
Sbjct: 115 LGFARQVFDE-----------------------------------IPQPDLPSWNSIINA 139

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV---RAND 296
             + G +  A  LF  MPE+ V+SW+ MING+ + G+ ++ALA+F +M   GV   R N+
Sbjct: 140 NFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNE 199

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           FT+   L+AC ++GALE G   H YI      +   +GTAL+DMYAKCG++E A+ VF  
Sbjct: 200 FTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSN 259

Query: 357 T-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               KD++ W+AMI GLA+HG  E+ +  F KM+  G  P+   FLA+  AC + G V  
Sbjct: 260 LGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSE 319

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------------------- 453
             ++   M  DY I P+++H+  +V+L  R G+  + +                      
Sbjct: 320 GKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGS 379

Query: 454 ------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                 +  + +  KL++L+P +  +YVLLSN+YA  GRW+DV  VR LM+   IKK PG
Sbjct: 380 RMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVPG 439

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
            S IEV G +H F  G   H   ++IH  LE+I+   + +GY+  T+ VL ++ EE KE 
Sbjct: 440 CSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKEL 499

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
           AL  HSEKLALA+G ++T+PGT I+IVK L IC DCH  +K  SK+  REI++RD  RFH
Sbjct: 500 ALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRFH 559

Query: 624 YFKDGTCSCRDYW 636
           +F  G CSCRDYW
Sbjct: 560 HFTQGLCSCRDYW 572


>gi|297743485|emb|CBI36352.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/637 (36%), Positives = 359/637 (56%), Gaps = 49/637 (7%)

Query: 14  APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           A T +   +H PS  + +T  +SLI +  S  QL+QIH+Q I   L ++  +  Q+I+  
Sbjct: 4   ATTLSPPPTHLPS--LPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFC 61

Query: 74  SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             H+   ++YA  +FD     N  ++N +I+G +      S +S +  ML   V P+  T
Sbjct: 62  CKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYT 121

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           YPF+ K     + +  GR LH  IVK G   + FV+  L  +Y   G+   A  VFD + 
Sbjct: 122 YPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSS 181

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLK 247
           + +    V+ WNV+I+G ++     ++++LF  M +  V     + VS++    +  DL 
Sbjct: 182 KGD----VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLN 237

Query: 248 KAGEL----FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
               +    F++MPE+  VSWTAMI+G+ Q    ++ L++F +M  A ++ ++FT+VS L
Sbjct: 238 VGKRVHRNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSIL 297

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           +ACA +GALE G  +  YI  N+  +   +G AL+DMY  CGN+E A  +F     +D +
Sbjct: 298 TACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKI 357

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +WTA+I+GLAI+G  E+A+  F +M+ +   PD  +                      +M
Sbjct: 358 SWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVI---------------------KNM 396

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
                    VK +++V   L    +  +  + ++ +  ++L+L+P++ + YVLL NIYAA
Sbjct: 397 --------PVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGAVYVLLCNIYAA 448

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
             RW+ +  VR LM  R IKK PG S IE+NG VH F AG   H  +KEI+SKL+++   
Sbjct: 449 CNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEIYSKLDEMSVD 508

Query: 542 AREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +  GY P T  V  +I +EEKE A+  HSEKLA+AFGLI + PG TI+IVK L +C DC
Sbjct: 509 LKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIRIVKNLRMCVDC 568

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H + K  SK+  RE+++RD TRFH+F+ G+CSC+DYW
Sbjct: 569 HYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 605


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 246/668 (36%), Positives = 347/668 (51%), Gaps = 80/668 (11%)

Query: 45  KQLRQIHAQIILH-NLFASSRITTQLISSASLHKSI-DYALSIF--DHFTPKNLHIFNVL 100
           + L Q+HA +I    L  S +    L+ +A+   ++  YA+S+F      P +   +NVL
Sbjct: 30  RYLPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVL 89

Query: 101 IRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +R L    H +  +  FV ML + SV P++ T     KS + +  L +GRG+    VK G
Sbjct: 90  MRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVKRG 149

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           +  D FV   L  MY        A  +FD   E      V++WN +I    K G   + V
Sbjct: 150 LMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENG----VVMWNAIITAYMKNGNWMEVV 205

Query: 220 ELFGMMPKKNVA----------------------SWVS-----------------LIDGF 240
           E+F  M +  VA                       WV+                 LID +
Sbjct: 206 EMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMY 265

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + G+L KA  LF+ M  + VV+W+AMI+G++Q  +  +ALA+F +M  A V  ND T+V
Sbjct: 266 AKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMV 325

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S LSACA +GALE G  VH+YI      L   +GTALVD YAKCG I+ A   F     K
Sbjct: 326 SVLSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVK 385

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           +  TWTA+I G+A +GR  +A++ F  M  +  EP    F+ +L AC +S  V+     F
Sbjct: 386 NSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHF 445

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-------------------------- 454
           DSM  DY I+P  +H+  VV+LL R G   + YQ                          
Sbjct: 446 DSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKN 505

Query: 455 --NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
               + +  +++ L P H   Y+LLSNIYA+ G+WK+ A +R  M+ R I+K PG S IE
Sbjct: 506 VEIGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIE 565

Query: 513 VNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCH 569
           ++G V  F  E   H   KEI+ K+E+++   +  GY+P T  V   + E EKE ++  H
Sbjct: 566 LDGVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHH 625

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SEKLA+AFGL++  PG TI++ K L +C DCHS  K  SK+  REIV+RD  RFH+FKDG
Sbjct: 626 SEKLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDG 685

Query: 629 TCSCRDYW 636
           TCSC DYW
Sbjct: 686 TCSCNDYW 693


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/656 (36%), Positives = 343/656 (52%), Gaps = 100/656 (15%)

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           YA+S+F      N  I+N ++RG A +S   S +  +V M+ L + PN  T+PF+ KS A
Sbjct: 18  YAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCA 77

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
                  G+ +H  ++K G E D +V   L  MY Q G+   A KVFD +  ++      
Sbjct: 78  KSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTA 137

Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-- 231
                                  + V+ WN +I+G ++ G  ++A+ELF  M K NV   
Sbjct: 138 LITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPD 197

Query: 232 ------------------------SWV-------------SLIDGFMRKGDLKKAGELFE 254
                                   SW+             +LID + + G ++ A  LFE
Sbjct: 198 EGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
            +  K VVSW  +I G++     ++AL +F +ML +G   ND T+VS L ACA +GA++ 
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 315 GVRVHNYIS--CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           G  +H YI     D     ++ T+L+DMYAKCG+IEAA  VF     K L +W AMI+G 
Sbjct: 318 GRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 377

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A+HGR       F +M  +G EPD   F+ +L+AC +SG++ L  + F SM  DY I P 
Sbjct: 378 AMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPK 437

Query: 433 VKHHTVVVNLLSRVGQDSQ---------------------------GYQNSQNSFTK-LL 464
           ++H+  +++LL   G   +                           G      SF + L+
Sbjct: 438 LEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLM 497

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG 524
           +++P++P SYVLLSNIYA  G W +VA+VR L+  + +KK PG S IE++  VH F  G 
Sbjct: 498 KVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGD 557

Query: 525 --HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQ 581
             H   +EI+  LE++ A   E G++P T  VL  ++EE KE AL  HSEKLA+AFGLI 
Sbjct: 558 KLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLIS 617

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T PGT + IVK L +C +CH   K  SKI +REI+ RD TRFH+F+DG CSC D+W
Sbjct: 618 TKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/683 (32%), Positives = 354/683 (51%), Gaps = 75/683 (10%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           PS       I +LI  + +   L+QIH  +I H+L   + +   L+      +   Y+  
Sbjct: 7   PSATSKVQQIKTLISVACTVNHLKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYL 66

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F H    N+ ++N LI G   N  F   +  F+ + +  +  +  T+P V K+    S 
Sbjct: 67  LFSHTQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPLVLKACTRASS 126

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             LG  LH L+VK G  +D      L  +Y   G+   A K+FDE P++    SV+ W  
Sbjct: 127 RKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDR----SVVTWTA 182

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV-------- 234
           L +G +  G  R+A++LF  M +  V                        W+        
Sbjct: 183 LFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYMEEME 242

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L++ + + G ++KA  +F+ M EK +V+W+ MI G++ N   ++ + +F 
Sbjct: 243 MQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFL 302

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QML   ++ + F++V  LS+CA +GAL+ G    + I  ++F     +  AL+DMYAKCG
Sbjct: 303 QMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCG 362

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +     VF E KEKD++   A I GLA +G  + +   F +    G  PDG+ FL +L 
Sbjct: 363 AMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLC 422

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------ 453
            C ++G ++  L FF+++   Y ++ +V+H+  +V+L  R G     Y            
Sbjct: 423 GCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNA 482

Query: 454 ----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                           Q ++    +L+ L+P +  +YV LSNIY+  GRW + A VR +M
Sbjct: 483 IVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMM 542

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
            ++ +KK PG+S+IE+ G VH F A    H L+ +I++KLED+    R  G++P TE+V 
Sbjct: 543 NKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVF 602

Query: 556 HNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
            ++ +EEKE  LG HSEKLA+A GLI T  G  I++VK L +CGDCH +MK  SKI++RE
Sbjct: 603 FDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRRE 662

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           IV+RD  RFH F +G+CSC DYW
Sbjct: 663 IVVRDNNRFHCFTNGSCSCNDYW 685


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 227/687 (33%), Positives = 366/687 (53%), Gaps = 76/687 (11%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S  P +++T   I+S++ S N  +  +QIH  ++         +    I+      S++Y
Sbjct: 291 SRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNY 350

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F      +L  +N +I G A +   +  +  F+ +LR  + P++ T   V ++ +S
Sbjct: 351 ARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS 410

Query: 142 LS-LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           L     +GR +H   +K+G+  D+FV   L D+Y + GK   A  +F           + 
Sbjct: 411 LEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF----HNQDGFDLA 466

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----------NVASWVS--------------- 235
            WN +++G +     R+A+ LF +M ++          N A                   
Sbjct: 467 SWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV 526

Query: 236 --------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                         ++D +++ G++K A ++F Q+P    V+WT +I+G  +NGE E+AL
Sbjct: 527 IKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQAL 586

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
             + QM  AGV+ +++T  + + AC+ + ALE G ++H  I   +      + T+LVDMY
Sbjct: 587 FTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMY 646

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AKCGNIE A  +F     + +  W AMI GLA HG  E+A+ +F +M   G  PD   F+
Sbjct: 647 AKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFI 706

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGY 453
            +L+AC +SG    A   FDSM+  Y +EP ++H++ +V+ LSR G          S  +
Sbjct: 707 GVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPF 766

Query: 454 QNSQNSF--------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
           + S   +                     KL  + P   ++YVLLSNIYAA  +W++    
Sbjct: 767 EASATMYRTLLNACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSA 826

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R +M+R ++KK+PG+S+I++   VH F AG   H+    I++K+E +M   +E+GY+P T
Sbjct: 827 RNMMKRVNVKKEPGFSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDT 886

Query: 552 EWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           E+ L +I+EE KE AL  HSEKLA+A+GL++T P TT++++K L +CGDCH+ +KY S +
Sbjct: 887 EFALVDIEEEDKESALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNV 946

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
            QREIVLRD  RFH+F+ G CSC DYW
Sbjct: 947 FQREIVLRDANRFHHFRSGICSCGDYW 973



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 175/383 (45%), Gaps = 30/383 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGL 104
           ++ HA I+   L     +T  LI+  +   S+  A  +FD  TP   ++L  +N ++   
Sbjct: 33  KRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFD-ITPQSDRDLVTYNAILAAY 91

Query: 105 AENSHFQSC-ISHFVF-MLRLSVRPNRLTYPFVSKSVASLSLL----SLGRGLHCLIVKS 158
           A          +H  F + RL  +   LT       +  L LL    S    L    VK 
Sbjct: 92  AHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKI 151

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           G+++D FV   L ++Y +  + R A  +FD  P ++    V+LWNV++    ++G   + 
Sbjct: 152 GLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRD----VVLWNVMMKAYVEMGAGDEV 207

Query: 219 VELF------GMMPKKNVASWVSLIDGFMRKGDLKK--------AGELFEQMPEKGVVSW 264
           + LF      G+ P  +  S  +++ G  +K   ++        A +LF    +  V  W
Sbjct: 208 LGLFSAFHRSGLRP--DCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVW 265

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
              ++ + Q GE  +A+  F  M+ + V  +  T +  LS  A +  LE G ++H  +  
Sbjct: 266 NKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVR 325

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +    ++  + ++MY K G++  A  +FG+ KE DL++W  +I G A  G  E +++ 
Sbjct: 326 FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRL 385

Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
           F  ++ SG  PD     ++L AC
Sbjct: 386 FIDLLRSGLLPDQFTITSVLRAC 408



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 177/406 (43%), Gaps = 19/406 (4%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
           H+F  L  ++  TT         + ++    + L++ S S  +  Q +A  I   L    
Sbjct: 108 HIFRLLRQSVMLTTR--------HTLSPLFKLCLLYGSPSASEALQGYAVKI--GLQWDV 157

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
            +   L++  +  + I  A  +FD    +++ ++NV+++   E       +  F    R 
Sbjct: 158 FVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRS 217

Query: 124 SVRPN----RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
            +RP+    R     V K       L   R     +     + D  V       Y+Q G+
Sbjct: 218 GLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDDSDVTVWNKTLSSYLQAGE 277

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL--- 236
              A   F +  +       L + V+++  + + +L    ++ G + +     +VS+   
Sbjct: 278 GWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHLELGKQIHGAVVRFGWDQFVSVANS 337

Query: 237 -IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
            I+ +++ G +  A  +F QM E  ++SW  +I+G +++G  E +L +F  +L +G+  +
Sbjct: 338 AINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPD 397

Query: 296 DFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
            FT+ S L AC+ +  +   G +VH         L   + TAL+D+Y+K G +E A L+F
Sbjct: 398 QFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLF 457

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
                 DL +W AM+ G  +   Y +A++ F  M   G + D   F
Sbjct: 458 HNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQITF 503



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/332 (20%), Positives = 130/332 (39%), Gaps = 78/332 (23%)

Query: 122 RLSVRPNRLT---YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
           + SV P+ L    +  +  ++A   L+ LG+  H +IV SG+  D +V  +L  MY + G
Sbjct: 4   KCSVSPSSLLPQWFSILRHAIADSDLI-LGKRTHAVIVTSGLNPDRYVTNNLITMYAKCG 62

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL------RKAVELFGMM------- 225
               A K+FD TP+ ++   ++ +N ++   +  G L       +A  +F ++       
Sbjct: 63  SLFSARKLFDITPQSDR--DLVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLT 120

Query: 226 -----------------PKKNVA----------SWV-----SLIDGFMRKGDLKKAGELF 253
                            P  + A           W      +L++ + +   +++A  LF
Sbjct: 121 TRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLF 180

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           ++MP + VV W  M+  + + G  ++ L +F     +G+R +          C  V  + 
Sbjct: 181 DRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD----------CVSVRTIL 230

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            GV           G K      L  + A       A+ +F    + D+  W   +    
Sbjct: 231 MGV-----------GKKTVFERELEQVRAY------ATKLFVCDDDSDVTVWNKTLSSYL 273

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
             G   +A+  F+ M+ S    D   ++ IL+
Sbjct: 274 QAGEGWEAVDCFRDMIKSRVPCDSLTYIVILS 305


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/706 (33%), Positives = 370/706 (52%), Gaps = 108/706 (15%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPK 92
           ISL+    S  QL+QIH+  I   L +      ++I+    H+S  + YA  +FD     
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQP 70

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            L I+N +I+G +  +H Q+ +S ++ ML  +++P+R T+PF+ K       L  G+ L 
Sbjct: 71  TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFTRNMALQYGKVLL 130

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
              VK G + + FV+     M+        A KVFD       +  V+ WN++++G +++
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFD----MGDAWEVVTWNIMLSGYNRV 186

Query: 213 GYLRKAVELFGMMPKKNVA--------------------------SWVS----------- 235
              +K+  LF  M K+ V+                           +++           
Sbjct: 187 KQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILE 246

Query: 236 --LIDGFMRKGDLKKAGELF-------------------------------EQMPEKGVV 262
             LID F   G++ +A  +F                               +Q+PE+  V
Sbjct: 247 NVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYV 306

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SWTAMI+G+ +     +ALA+F +M  + V+ ++FT+VS L+ACA +GALE G  V  YI
Sbjct: 307 SWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYI 366

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
             N       +G AL+DMY KCGN+  A  VF E   KD  TWTAMI GLAI+G  E+A+
Sbjct: 367 DKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEEAL 426

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F  M+ +   PD   ++ +L AC ++G V+   +FF SM   + I+P+V H+  +V+L
Sbjct: 427 AMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDL 486

Query: 443 LSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPKHPSSY 474
           L R G+  + +                            Q ++ +  ++L+L+P++ + Y
Sbjct: 487 LGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGAVY 546

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIH 532
           VLL NIYAA  RW+++ +VR LM  R IKK PG S +E+NG+V+ F AG   H  +KEI+
Sbjct: 547 VLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIY 606

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
           +KLE++M    + GY P T  V  ++ EE KE AL  HSEKLA+A+ LI + PG TI+IV
Sbjct: 607 AKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIRIV 666

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +C DCH + K  S+   RE+++RD TRFH+F+ G+CSC ++W
Sbjct: 667 KNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/646 (35%), Positives = 347/646 (53%), Gaps = 75/646 (11%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H+PS     TH   L+H+  S  +L+Q+HA ++  N   SS   +++ S  + + S  YA
Sbjct: 15  HRPS-----TH---LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYA 66

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             IF       +  +N  +R  AE       IS F  +    + P+  T  FV K+ + L
Sbjct: 67  KLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL 126

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G+ +H  + K G++ + F++  +  +Y   G+   A KVFD+ P+++    V+ W
Sbjct: 127 LDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRD----VITW 182

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N++I    K+G    A +LF  MP++NV SW S+I G+ + G  K+A +L          
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDL---------- 232

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
                                F +M DAG+  N+ TVV+ L ACA +G L  G R+H++ 
Sbjct: 233 ---------------------FLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           + + +     +   L+DMY KCG +E A  +F   +E+ +++W+AMI GLA HGR E A+
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F KM+ +G +P+   F+ IL AC + G V+    +F SM  DY I P ++H+  +V+L
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391

Query: 443 LSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSY 474
            SR G   + ++   N                            +   L +L P +   Y
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEATRHLSKLDPLNDGYY 451

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIH 532
           V+LSNIYA  GRW+DVARVR LM+ R +KK PGWS I V G V+ F AG   H   +EI 
Sbjct: 452 VVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVEGVVYNFVAGDDTHPQTEEIF 511

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
              E ++   + +GY+P T  VL +++E+ KE+ L  HSEKLA+ FGLI+TTPGT I+I+
Sbjct: 512 QTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIM 571

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +C DCH+ +K  S +S REIV+RD  RFH FK+G+CSC DYW
Sbjct: 572 KNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 617


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/640 (35%), Positives = 352/640 (55%), Gaps = 42/640 (6%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHF 89
           ++SL+ ++    Q+ QIHA II  +L    F  +++  +L + +S +  + YA S+FD  
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLL-YARSVFDEI 64

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLG 148
              +  I+N +IR    + + Q  +S F  M      P +  +   V ++   L     G
Sbjct: 65  PSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNG 124

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + LH  ++K G+  D FV   L +MY + G    A  + DE    +    ++ +NVL+  
Sbjct: 125 QKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPD----LVPYNVLLAE 180

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
             ++G +  A +LF  MP++++ SW ++I G    GD+  A +LF++  E+ ++SW++MI
Sbjct: 181 YVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMI 240

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
             +++  ++ +AL +F +M  A V  +  T+VS LSAC  VGAL  G  +H  I  N   
Sbjct: 241 AAYAKARQSNEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIE 300

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           +   +GT+LVDMYAKCG+I+ +  VF     +D+  W+AMI GLA HG  E A+ +F KM
Sbjct: 301 IDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKM 360

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           +    +P+   F+ +L+AC + G V     +F SM   Y + P ++H+  VV++L R G+
Sbjct: 361 ISEDIKPNDVTFIGVLSACSHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGR 420

Query: 449 DSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNI 480
             +                          Y+N   ++ +   LL+L+P    +YVLLSNI
Sbjct: 421 LQEAMELIKSMPFAPDAIVWRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNI 480

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           Y+    W  V  VR +M+  +I+K PG S IEV+  VH F AG   H  +K+I   L +I
Sbjct: 481 YSQAKEWDKVVNVRRMMKNINIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEI 540

Query: 539 MAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
            A  +  GY P T  VL +  E EKE AL  HSEKLA+AFGL+ T PG+TI+IVK L +C
Sbjct: 541 TARLKANGYAPLTASVLQDFDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVC 600

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH  +K  S+  +R I++RD  RFH+F +G+CSC+DYW
Sbjct: 601 DDCHIAIKLISRTYKRRIIVRDRNRFHHFVNGSCSCKDYW 640


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 229/656 (34%), Positives = 359/656 (54%), Gaps = 75/656 (11%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--S 72
           PT+ + S     +N  +T  + L+   ++ ++LRQIH Q++   L       ++L++  +
Sbjct: 8   PTSQLSSE----SNAAQT--LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
           +    S+ YA ++FD     N  ++N +IRG + +   +  +  +  ML  SV  N  T+
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           PF+ K+ +S+S L   + +H  I+K G   + +                           
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTT------------------------- 156

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
                     N L+N  SK G ++ A  LF  + +++  SW S+IDG+ + G+++ A E+
Sbjct: 157 ----------NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F  MPE+ ++SWT+MI+G    G+ ++AL +F +M  AG++ ++  +VS L ACA +G L
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           + G  +H YI  ++  +   +G  L+DMYAKCG++E A  VF + +EK +  WTAMI G 
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           AIHGR  +A+++F KM  +G EP+   F  ILTAC ++G V  A   F+SM   +  +PS
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPS 386

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------------------------LL 464
           ++H+  +V+LL R G   +  +  +N   K                            L+
Sbjct: 387 IEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI 446

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
           Q+ P H   Y+ L++I+AA G W   ARVR  M+ + + K PG S I VNG  H F AG 
Sbjct: 447 QVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGD 506

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQ 581
             H   KEI   LE I+   RE+GY P    +L +++++++E A+  HSEKLA+ FGLI 
Sbjct: 507 ESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLIS 566

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T PG TI+IVK L +C DCH+++K  SK+  REI++RD TRFH FKDG C+C DYW
Sbjct: 567 TKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/637 (34%), Positives = 347/637 (54%), Gaps = 76/637 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
           LI  S S  ++ QIHA I+ HNL    R   +  +L  + + H  I ++L++F      +
Sbjct: 35  LIDKSQSVDEVLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 94

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           L +F   I   + N         +V +L   + PN  T+  + KS ++ S    G+ +H 
Sbjct: 95  LFLFTAAINTASINGLKDQAFLLYVQLLSSEINPNEFTFSSLLKSCSTKS----GKLIHT 150

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K G+  D +V   L D+Y + G    A KVFD                         
Sbjct: 151 HVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDR------------------------ 186

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                      MP++++ S  ++I  + ++G+++ A  LF+ M E+ +VSW  MI+G++Q
Sbjct: 187 -----------MPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQ 235

Query: 274 NGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           +G    AL +F ++L  G  + ++ TVV+ALSAC+++GALE G  +H ++  +   L   
Sbjct: 236 HGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVK 295

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
           + T L+DMY+KCG++E A LVF +T  KD++ W AMI G A+HG  + A++ F +M   +
Sbjct: 296 VCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGIT 355

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G +P    F+  L AC ++G V   +  F+SM  +Y I+P ++H+  +V+LL R GQ  +
Sbjct: 356 GLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 415

Query: 452 GYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAA 483
            Y+  +N                                L+ L  K+   YVLLSNIYA+
Sbjct: 416 AYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYAS 475

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
            G ++ VA+VR LM+ + I K+PG S IE+   VH F AG   H  +KEI++ L  I   
Sbjct: 476 VGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISER 535

Query: 542 AREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +  GY+P T  VL +++E EKE++L  HSE+LA+A+GLI T PG+ +KI K L +C DC
Sbjct: 536 IKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDC 595

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H++ K  SKI+ R+IV+RD  RFH+F DG+CSC D+W
Sbjct: 596 HTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 246/669 (36%), Positives = 343/669 (51%), Gaps = 118/669 (17%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           + YA+S+F+     NL I+N ++RG A +S   S +  +V M+ L   PN  ++PF+ KS
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG-------------------- 178
            A       GR +H  ++K G   D +V   L  MY + G                    
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 179 -------KTRGAF----KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
                   +RG F    KVFDE  E++    V+ WN +I G  + G   +A+ELF  M +
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERD----VVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 228 KNVA--------------------------SWV-----------------SLIDGFMRKG 244
            NV                           SWV                 +LID + + G
Sbjct: 190 TNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           D++ A  LFE +  K VVSW  +I G++     ++AL +F +ML +G   ND T++S L 
Sbjct: 250 DVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLP 309

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKE 359
           ACA +GA++ G  +H YI   D  LKG     ++ T+L+DMYAKCG+IEAA  VF     
Sbjct: 310 ACAHLGAIDIGRWIHVYI---DKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLY 366

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           + L +W AMI+G A+HGR   A   F +M  +  EPD   F+ +L+AC +SG + L    
Sbjct: 367 RSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQI 426

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------------------DSQG 452
           F SM  DY + P ++H+  +++LL   G                               G
Sbjct: 427 FKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHG 486

Query: 453 YQNSQNSFT-KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                 SF  KL++++P++  SYVLLSNIYA  GRW+DVARVR ++  + +KK PG S I
Sbjct: 487 NLELAESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSI 546

Query: 512 EVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGC 568
           EV+  VH F  G   H   +EI+  LE++     E G+ P T  VL  ++EE KE AL  
Sbjct: 547 EVDSVVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRH 606

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLA+AFGLI T PGT + IVK L +C +CH   K  SKI +REIV RD TRFH+F+D
Sbjct: 607 HSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRD 666

Query: 628 GTCSCRDYW 636
           G CSC DYW
Sbjct: 667 GVCSCCDYW 675


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 235/641 (36%), Positives = 362/641 (56%), Gaps = 25/641 (3%)

Query: 15  PTTNIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           PT N  S    ++     H  +SLI   + TKQL+QIHAQ++   LF      ++LI++A
Sbjct: 18  PTPNPNSITLNNDRYFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFFDPFSASRLITAA 77

Query: 74  SLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRL 130
           +L    S+DYA  +FD     NL+ +N LIR  A +S+    +  F+ ML  S   P++ 
Sbjct: 78  ALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKF 137

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+PF+ K+ + L  L  G+  H +++K  +  D F+   L   Y + G+    ++VF   
Sbjct: 138 TFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNI 197

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV-SLIDGFMRKGDLKKA 249
           P ++    V+ WN +I    + G   +A+ELF  M  +N  +   +++D + + G ++ A
Sbjct: 198 PRRD----VVSWNSMITAFVQGGCPEEALELFQEMETQNSLTLSNAMLDMYTKCGSVEDA 253

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             LF++MPEK +VSWT M+ G+++ GE + A  +F  M +  + A +  ++SA   C K 
Sbjct: 254 KRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWN-ALISAYEQCGKP 312

Query: 310 G-ALEA--GVRVHNYISCNDFGLKGA------IGTALVDMYAKCGNIEAASLVFGETKEK 360
             ALE    +++      ++  LK        + T+L+DMY KCG+++ A +VF   + K
Sbjct: 313 KEALELFHELQLSKTAKPDEVTLKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK 372

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D+  W+AMI GLA+HG  + AI  F KM     +P+   F  IL AC + G V+    FF
Sbjct: 373 DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 432

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480
           + M   Y   P     +V   LL       +    ++ + ++L++L+P +  +YVLLSNI
Sbjct: 433 NQMELVYGKMPMAPAASVWGALLGAC-TIHENVVLAEQACSQLIELEPGNHGAYVLLSNI 491

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YA  G+W  V+ +R LM+   +KK+PG S IEV+G VH F  G   H  AK+I++KL++I
Sbjct: 492 YAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEI 551

Query: 539 MAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           +A     GY+P    +L  ++EE  KE+AL  HSEKLA+AFGLI T     I+IVK L +
Sbjct: 552 VARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRV 611

Query: 597 CGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           CGDCHS+ K  SK+  REI+LRD  RFH+F++G CSC DYW
Sbjct: 612 CGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 652


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/659 (34%), Positives = 351/659 (53%), Gaps = 78/659 (11%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           P  N  S+ K   ++ +  IISL+  S    Q+  IHAQ+I +       +  +L+ S S
Sbjct: 33  PHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCS 92

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
              +IDYA  IF +    N++++  LI G   + ++   I  +  ML  S+ P+      
Sbjct: 93  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 152

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + K+  S   L  GR +H   +K G   +  VR+ + ++Y + G+   A +VF+E     
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEE----- 207

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
                                         MP+  VAS V +I  +  +G +++AG +F 
Sbjct: 208 ------------------------------MPEDVVASTV-MISSYSDQGLVEEAGAVFS 236

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           ++  K  V WTAMI+GF +N E  +AL  F  M    VR N+FT+V  LSAC+++GALE 
Sbjct: 237 RVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G  VH+Y+   +  L   +G AL++MY++CG+I+ A  VF E K++D++T+  MI GL++
Sbjct: 297 GRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM 356

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           +G+  QAI+ F+ M+     P    F+ +L AC + G V      F SM  DY +EP ++
Sbjct: 357 NGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIE 416

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH------------------------ 470
           H+  +V+LL RVG+  + Y        + +++ P H                        
Sbjct: 417 HYGCMVDLLGRVGRLEEAY-----DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAK 471

Query: 471 ---------PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
                      +YVLLS++YA+ G+WK+ A+VR  M+   ++K+PG S IEVN  +H F 
Sbjct: 472 ELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 531

Query: 522 AGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFG 578
            G   H   + I+ KLE++    R +GY P  E VL +I++ EKE AL  HSE+LA+ +G
Sbjct: 532 LGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYG 591

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           LI T P T I+++K L +C DCHS +K  +KI++R+IV+RD  RFHYF++G CSC DYW
Sbjct: 592 LISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 224/678 (33%), Positives = 361/678 (53%), Gaps = 74/678 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           +++   SLI SS    QLRQIHA++++  L  S  + T+LI ++S +  I +A  +FD  
Sbjct: 20  SDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDL 79

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
               +  +N +IRG + N+HFQ  +  +  M    V P+  T+P + K+   LS L +GR
Sbjct: 80  PRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGR 139

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  + + G E D FV+  L  +Y +  +   A  VF+  P   +  +++ W  +++  
Sbjct: 140 FVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPER--TIVSWTAIVSAY 197

Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLK------------------ 247
           ++ G   +A+E+F  M K +V     + VS+++ F    DL+                  
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEP 257

Query: 248 -----------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                      K G+      LF++M    ++ W AMI+G+++NG A+ A+ +F +M++ 
Sbjct: 258 DLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINK 317

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            VR +  ++ SA+SACA+VG+LE    +  Y+S +D+     I +AL+DM+AKCG++E A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECA 377

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF  T ++D++ W+AMI G  +HG+  +AI  ++ M   G  P+   FL +L AC +S
Sbjct: 378 RSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHS 437

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------- 455
           G V+    FF+ M  D+ I P  +H+  +++LL R G   Q Y+                
Sbjct: 438 GMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 456 -------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                         + +  +L  + P +   YV LSN+YAA   W  VA VR  M+ + +
Sbjct: 497 LLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK- 559
            KD G S++EV G +  F  G   H   +EI  ++E I +  +E G++   +  LH++  
Sbjct: 557 NKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLND 616

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EE EE L  HSE++ +A+GLI T  GTT++I K L  C +CH+  K  SK+  REIV+RD
Sbjct: 617 EEAEETLCSHSERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRD 676

Query: 620 T-RFHYFKDGTCSCRDYW 636
           T RFH+FKDG CSC DYW
Sbjct: 677 TNRFHHFKDGVCSCGDYW 694


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 220/637 (34%), Positives = 350/637 (54%), Gaps = 76/637 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFTPKN 93
            I +S+S  ++ QIHA I+ HNL    R   +  +L  + + H  I ++L++F      +
Sbjct: 33  FIDNSHSVDEVLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPD 92

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           L +F   I   + N         +V +L   + PN  T+  + KS ++ S    G+ +H 
Sbjct: 93  LFLFTAAINTASINGLKDQAFLLYVQLLSSQINPNEFTFSSILKSCSTKS----GKLIHT 148

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K G+  D +V   L D+Y + G    A KVFD                         
Sbjct: 149 HVLKFGLGLDPYVATGLVDIYAKGGDVVSAQKVFDR------------------------ 184

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                      MP++++ S  ++I  + ++G+++ A  LF++M E+ +VSW  MI+G+SQ
Sbjct: 185 -----------MPERSLVSSTAMITCYAKQGNVEAARALFDRMCERDIVSWNVMIDGYSQ 233

Query: 274 NGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           +G    AL +F ++L D   + ++ TVV+ALSAC+++GALE G  +H +++ +   L   
Sbjct: 234 HGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIHVFVNSSRIRLNVK 293

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YS 391
           + TAL+DMY+KCG++E A LVF +T  KD++ W AMI G A+HG  + A++ F +M   +
Sbjct: 294 VCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHGYSQDALRLFDEMQGIT 353

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G +P    F+  L AC ++G V   +  F+SM  +Y I+P ++H+  +V+LL R GQ  +
Sbjct: 354 GLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKR 413

Query: 452 GYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAA 483
            Y+  +N   +                            L+     +   YVLLSNIYA 
Sbjct: 414 AYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQNISNSGIYVLLSNIYAL 473

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
            G ++ VA+VR LM+ + I K+PG S IE++  VH F AG   H  +KEI++ L  +   
Sbjct: 474 VGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREHLKSKEIYTMLRKMSER 533

Query: 542 AREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +  GY+P T  VLH+++E EKE +L  HSE+LA+A+GLI T PG+ +KI K L +C DC
Sbjct: 534 IKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDC 593

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H++ K  SKI+ R+IV+RD  RFH+F DG+CSC D+W
Sbjct: 594 HTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/666 (32%), Positives = 353/666 (53%), Gaps = 76/666 (11%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S +Q R++HA I+   +  +  +   L+S  +   S+  A  +FD    +N+  +  +I 
Sbjct: 62  SLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIE 121

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
                +        +  M     +P+++T+  +  +  +  LL LG+ +H  IV++G+E 
Sbjct: 122 AFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLEL 181

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           +  V   L  MY + G    A  +FD  PEKN    V+ W +LI G ++ G +  A+EL 
Sbjct: 182 EPRVGTSLVGMYAKCGDISKARVIFDRLPEKN----VVTWTLLIAGYAQQGQVDVALELL 237

Query: 223 GMMPKKNVAS-------------------------------------WV--SLIDGFMRK 243
             M +  VA                                      WV  SLI  + + 
Sbjct: 238 ETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKC 297

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G L++A +LF  +P + VV+WTAM+ G++Q G  ++A+ +F +M   G++ +  T  S L
Sbjct: 298 GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL 357

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           ++C+    L+ G R+H  +    + L   + +ALV MYAKCG+++ ASLVF +  E++++
Sbjct: 358 TSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVV 417

Query: 364 TWTAMIWGL-AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
            WTA+I G  A HGR  +A++YF +M   G +PD   F ++L+AC + G V+     F S
Sbjct: 418 AWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRS 477

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQ 454
           M  DY I+P V+H++  V+LL R G   +                              +
Sbjct: 478 MYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVE 537

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
             + +   +L+L P    +YV LS+IYAA GR++D  +VR +M++R + K+PG S+IEV+
Sbjct: 538 RGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 597

Query: 515 GHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSE 571
           G VH F  E   H  +++I+ +L  +    +E GY+P T +VLH++ EE KE  L  HSE
Sbjct: 598 GKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSE 657

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
           +LA+ +GL++T PG  I+IVK L +CGDCH+  K+ SK+  REI+ RD  RFH+F DG C
Sbjct: 658 RLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVC 717

Query: 631 SCRDYW 636
           SC D+W
Sbjct: 718 SCGDFW 723



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 151/308 (49%), Gaps = 39/308 (12%)

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           +  A L  L  GR +H  I+KSG++ + ++   L  MY + G    A +VFD   ++N  
Sbjct: 55  QECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIV 114

Query: 197 ESVLLWNVLINGCSKIGYLR--KAVELFGMMPKKNVASWVSLIDGFM------------- 241
               +    + G   +   +  + ++L G  P K   ++VSL++ F              
Sbjct: 115 SWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK--VTFVSLLNAFTNPELLQLGQKVHM 172

Query: 242 ----------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                                 + GD+ KA  +F+++PEK VV+WT +I G++Q G+ + 
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           AL +   M  A V  N  T  S L  C    ALE G +VH YI  + +G +  +  +L+ 
Sbjct: 233 ALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLIT 292

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG +E A  +F +   +D++TWTAM+ G A  G +++AI  F++M   G +PD   
Sbjct: 293 MYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMT 352

Query: 400 FLAILTAC 407
           F ++LT+C
Sbjct: 353 FTSVLTSC 360



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 184/409 (44%), Gaps = 51/409 (12%)

Query: 35  ISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL+++  + + L+   ++H +I+   L    R+ T L+   +    I  A  IFD    
Sbjct: 152 VSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPE 211

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           KN+  + +LI G A+       +     M +  V PN++T+  + +   + + L  G+ +
Sbjct: 212 KNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKV 271

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I++SG   + +V   L  MY + G    A K+F + P ++    V+ W  ++ G ++
Sbjct: 272 HRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRD----VVTWTAMVTGYAQ 327

Query: 212 IGYLRKAVELF------GMMPKKNVASWV------------------------------- 234
           +G+  +A+ LF      G+ P K   + V                               
Sbjct: 328 LGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYL 387

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-FSQNGEAEKALAMFFQMLDAG 291
             +L+  + + G +  A  +F QM E+ VV+WTA+I G  +Q+G   +AL  F QM   G
Sbjct: 388 QSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQG 447

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-E 348
           ++ +  T  S LSAC  VG +E G R H      D+G+K  +   +  VD+  + G++ E
Sbjct: 448 IKPDKVTFTSVLSACTHVGLVEEG-RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEE 506

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           A +++           W A++    +H   E+  +  + ++    + DG
Sbjct: 507 AENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDG 555



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/373 (20%), Positives = 157/373 (42%), Gaps = 18/373 (4%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           ++  A+     ++ +    N IT   I+    +  + +  +++H  II         +  
Sbjct: 229 QVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVN 288

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI+       ++ A  +F     +++  +  ++ G A+       I+ F  M +  ++P
Sbjct: 289 SLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKP 348

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +++T+  V  S +S + L  G+ +H  +V +G   D +++  L  MY + G    A  VF
Sbjct: 349 DKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVF 408

Query: 188 DETPEKNKSESVLLWNVLING-CSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMR 242
           ++  E+N    V+ W  +I G C++ G  R+A+E F  M K+ +     ++ S++     
Sbjct: 409 NQMSERN----VVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTH 464

Query: 243 KGDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G +++  + F  M      +  V  ++  ++   + G  E+A  +   M          
Sbjct: 465 VGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSM---PFIPGPS 521

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
              + LSAC     +E G R    +   D    GA   AL  +YA  G  E A  V    
Sbjct: 522 VWGALLSACRVHSDVERGERAAENVLKLDPDDDGAY-VALSSIYAAAGRYEDAEKVRQVM 580

Query: 358 KEKDLLTWTAMIW 370
           +++D++      W
Sbjct: 581 EKRDVVKEPGQSW 593


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 237/731 (32%), Positives = 380/731 (51%), Gaps = 113/731 (15%)

Query: 15  PTTNIKSSHKPSNNIT--ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           P+ ++++    +NN+      I+S I   +S+KQL+++HA+++   LF      ++L ++
Sbjct: 7   PSISLQNFSTLNNNLLFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTA 66

Query: 73  ASLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLSVRPNR 129
           ++L    ++DYA ++FD     NL+ +N LIR  A +S  FQS +     + +    PN+
Sbjct: 67  SALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNK 126

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T+PFV K+ + L    +G  +H + +K     D ++   L   Y   G    A ++F  
Sbjct: 127 FTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKG 186

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV------------------- 230
              K+    V+ WN +I+  ++      A+ELF  M ++NV                   
Sbjct: 187 ISCKD----VVSWNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLD 242

Query: 231 ---ASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                WV                 +++D + + G +  A +LF++MPE+ V SWT M++G
Sbjct: 243 LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDG 302

Query: 271 FS-------------------------------QNGEAEKALAMFFQM-LDAGVRANDFT 298
           ++                               QNG+ ++ALA+F ++ L    + ++ T
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +VS LSACA++GA++ G  +H YI      L   + ++LVDMYAKCG++E A  VF   +
Sbjct: 363 LVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKCGSLEKALEVFYSVE 422

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           E+D+  W+AMI GL +HGR + AI  F +M  +  +P+   F  +L AC ++G V     
Sbjct: 423 ERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRV 482

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQNSFT--------------- 461
           FF  M   Y + P +KH+  +V++L R G  +++    N  ++                 
Sbjct: 483 FFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLH 542

Query: 462 -----------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                      +LL+L+P++  + VLLSNIYA  GRW+ V+ +R LM+   +KK+PG S 
Sbjct: 543 MNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSS 602

Query: 511 IEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEAL 566
           IE NG+VH F  G   H L+  I+SKLE+I    +  GY P    +L  I+E+  KE+AL
Sbjct: 603 IEANGNVHEFLVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQAL 662

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+AFGL+   P   I++VK L ICGDCH+  K  S++  R+I+LRD  RFH+F
Sbjct: 663 SLHSEKLAIAFGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHF 722

Query: 626 KDGTCSCRDYW 636
           +DG CSC DYW
Sbjct: 723 RDGHCSCMDYW 733


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/641 (35%), Positives = 357/641 (55%), Gaps = 41/641 (6%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFT 90
           H +SL++S  + + L QIH   I + +   S  T +LI   + S+  ++ YA  +   F 
Sbjct: 7   HCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFP 66

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
             +  +FN L+RG +E+    + ++ FV M+R   V P+  ++ FV K+V +   L  G 
Sbjct: 67  EPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGF 126

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +HC  +K G+E   FV   L  MY   G    A KVFDE  + N    ++ WN +I  C
Sbjct: 127 QMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITAC 182

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
            +   +  A E+F  M  +N  SW  ++ G+++ G+L+ A  +F +MP +  VSW+ MI 
Sbjct: 183 FRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIV 242

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G + NG   ++   F ++  AG+  N+ ++   LSAC++ G+ E G  +H ++    +  
Sbjct: 243 GIAHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSW 302

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
             ++  AL+DMY++CGN+  A LVF   +EK  +++WT+MI GLA+HG+ E+A++ F +M
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEM 362

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  PDG  F+++L AC ++G ++   ++F  M+  Y IEP ++H+  +V+L  R G+
Sbjct: 363 TAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGK 422

Query: 449 DSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNI 480
             + Y                            + ++    +L +L P +    VLLSN 
Sbjct: 423 LQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNA 482

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDI 538
           YA  G+WKDVA +R  M  + IKK   WS +EV   +++F AG  K  +  E H KL++I
Sbjct: 483 YATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEI 542

Query: 539 MAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           +   + E GY P     L+++ +EEKE+ +  HSEKLALAF L + + G  I+IVK L I
Sbjct: 543 ILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRI 602

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           C DCH++MK  SK+   EI++RD  RFH FKDG+CSCRDYW
Sbjct: 603 CRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 240/667 (35%), Positives = 345/667 (51%), Gaps = 81/667 (12%)

Query: 47  LRQIHAQIILH-NLFASSRITTQLISSASLHKSI-DYALSIF--DHFTPKNLHIFNVLIR 102
           L Q+HA +I    L  S++    L+ +A+   ++  YA+S+F      P +   +NVL+R
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 103 GLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
                 H +  +  F+ ML  +     ++ T     KS + +  L +GRG+    VK G+
Sbjct: 92  AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             D FV   L  MY   G    A  VFD   E      V++WN ++    K G   + VE
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESG----VVMWNAIVAAYLKNGDWMEVVE 207

Query: 221 LFGMMPKKNVA----------------------SWVS-----------------LIDGFM 241
           +F  M +  VA                       WV+                 L+D + 
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           + G++ KA  LF+ M  + VV+W+AMI+G++Q  +  +AL +F +M  A V  ND T+VS
Sbjct: 268 KCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVS 327

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LSACA +GALE G  VH+Y+      L   +GTALVD YAKCG I+ A   F     K+
Sbjct: 328 VLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKN 387

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
             TWTA+I G+A +GR  +A++ F  M  +G EP    F+ +L AC +S  V+     FD
Sbjct: 388 SWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFD 447

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------------------- 454
           SM  DY I+P V+H+  +V+LL R G   + YQ                           
Sbjct: 448 SMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNV 507

Query: 455 -NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
              + +  +++ L P H   YVLLSNIYA+ G+WKD A VR  M+ R I+K PG S IE+
Sbjct: 508 GIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIEL 567

Query: 514 NGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHS 570
           +G V  F  E   H   +EI+ K+E+++   +  GY+P T  V   ++E EKE ++  HS
Sbjct: 568 DGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHS 627

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGT 629
           EKLA+AFGL++  PG TI++ K L +C DCHS  K  SK+  REIV+RD   FH+FKDGT
Sbjct: 628 EKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGT 687

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 688 CSCNDYW 694



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 68/354 (19%), Positives = 136/354 (38%), Gaps = 35/354 (9%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T   +++        K  + +   +    L  + ++ T L+   +    I  A  +F
Sbjct: 220 DEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLF 279

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++  ++ +I G  +    +  +  F  M    V PN +T   V  + A L  L 
Sbjct: 280 DGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALE 339

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  + +  +     +   L D Y + G    A + F+  P KN       W  LI
Sbjct: 340 TGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNS----WTWTALI 395

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP----- 257
            G +  G  R+A+ELF  M +  +     +++ ++        +++    F+ M      
Sbjct: 396 KGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGI 455

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +  V  +  M++   + G  ++A      M    +  N     + LS+CA          
Sbjct: 456 KPRVEHYGCMVDLLGRAGLVDEAYQFIRTM---PIEPNAVIWRALLSSCA---------- 502

Query: 318 VHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDL 362
           VH  +   +  LK  I            L ++YA  G  + A++V  E K++ +
Sbjct: 503 VHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGI 556


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 238/711 (33%), Positives = 370/711 (52%), Gaps = 114/711 (16%)

Query: 36  SLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +L     S KQL+QIHAQ++    LH+ +A+S + T   ++ S   ++DYA  +FD    
Sbjct: 144 ALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTA--AAFSSFSALDYARKVFDQIPQ 201

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRG 150
            NL+ +N+LIR LA +S     +  F+ ML  S   PN+ T+P + K+VA      +G+ 
Sbjct: 202 PNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKA 261

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H + +K+    D FV   L   Y   G    A+ VF+     NK   ++ WN ++ G  
Sbjct: 262 VHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK--DIVSWNSMVTGFV 319

Query: 211 KIGYLRKAVELFGMMPKK----NVASWVSL------------------------------ 236
           + GY  KA++LF  M  +    N  + VS+                              
Sbjct: 320 QGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLN 379

Query: 237 -----IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS------------------- 272
                ID F++ G+++ A  LF+ M ++ VVSWT +I+G++                   
Sbjct: 380 VCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKD 439

Query: 273 ------------QNGEAEKALAMF--FQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
                       Q+G  ++ALA+F   Q+  +G R +  T++S LSACA++GA++ G  +
Sbjct: 440 IPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWI 499

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H YI      L   + T+L+DMY+K G++E A  VF     KD+  W+AMI GLA+HGR 
Sbjct: 500 HGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRG 559

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           E AI+ F  M  +  +P+   F  +L AC +SG V      FD M   Y + P  KH++ 
Sbjct: 560 EAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSC 619

Query: 439 VVNLLSRVGQDSQG----------------------------YQNSQNSFTKLLQLKPKH 470
           +V++L R G   +                              + ++ + ++LL+++P +
Sbjct: 620 MVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGN 679

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
             +YVLLSN+YA  G W+ V+ +R  M+   +KK+ G S IE++G VH F  G   H L+
Sbjct: 680 HGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLS 739

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLALAFGLIQTTPGT 586
           ++I++KL++IMA  R  GY+  T  +L  ++EE  KE+AL  HSEK+A+AFGLI+     
Sbjct: 740 RDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQ 799

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            I+IVK L +C DCH++ K  SK+  R+IVLRD  RFH+F  G CSC+DYW
Sbjct: 800 AIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 227/670 (33%), Positives = 354/670 (52%), Gaps = 77/670 (11%)

Query: 40  SSNSTKQLRQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
           ++ S KQ +Q+HA +I  ++  + + + T+L +  +    +  A  IFD    KN  ++N
Sbjct: 71  NTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWN 130

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
            +IRG A N      +  +  ML    R +  TYPFV K+   L L+ +GR +H  +V  
Sbjct: 131 FMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLLLVEIGRRVHSEVVVC 190

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           G+E D +V   L  MY + G    A  VFD   E++ +     WN +I+G +K      A
Sbjct: 191 GLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTS----WNTMISGYAKNADSGTA 246

Query: 219 VELFGMMPKKNVASWVSLIDGFMRK-GDLKKAGE-------------------------- 251
             +F +M K  + +  + + G +    DLK   E                          
Sbjct: 247 FLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGNYNKFFTNSLIE 306

Query: 252 -------------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
                        LFE++  K  VSW +MI G+++NG+A ++L +F +M   G   +  T
Sbjct: 307 MYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVT 366

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
            ++ L AC ++ AL  G+ +H+Y+    F     +GTALVDMY+KCG++  +  VF E  
Sbjct: 367 FIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMP 426

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           +K L++W+AM+ G  +HGR  +AI     M  +   PD  VF +IL+AC ++G V     
Sbjct: 427 DKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKE 486

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------------- 453
            F  M  +Y ++P++ H++ +V+LL R G   + Y                         
Sbjct: 487 IFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLH 546

Query: 454 ---QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
              + ++ S  K+  + PK  SSY+ LSNIYAAE RW DV RVR +++R+ +KK PG S+
Sbjct: 547 KNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSF 606

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           IE++  VHRF  G   H+  ++I++KL ++    +E GY P T  V ++++EE KE+ L 
Sbjct: 607 IELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLW 666

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
            HSE+LA+AF LI T PGT I+I K L +CGDCH++ K  S+++ REI++RD  RFH+F 
Sbjct: 667 DHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFI 726

Query: 627 DGTCSCRDYW 636
            G CSC DYW
Sbjct: 727 KGFCSCGDYW 736


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 228/656 (34%), Positives = 358/656 (54%), Gaps = 75/656 (11%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--S 72
           PT+ + S     +N  +T  + L+   ++ ++LRQIH Q++   L       ++L++  +
Sbjct: 8   PTSQLSSE----SNAAQT--LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
           +    S+ YA ++FD     N  ++N +IRG + +   +  +  +  ML  SV  N  T+
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           PF+ K+ +S+S     + +H  I+K G   + +                           
Sbjct: 122 PFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTT------------------------- 156

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
                     N L+N  SK G ++ A  LF  + +++  SW S+IDG+ + G+++ A E+
Sbjct: 157 ----------NSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEI 206

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F  MPE+ ++SWT+MI+G    G+ ++AL +F +M  AG++ ++  +VS L ACA +G L
Sbjct: 207 FNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVL 266

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           + G  +H YI  ++  +   +G  L+DMYAKCG++E A  VF + +EK +  WTAMI G 
Sbjct: 267 DQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGY 326

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           AIHGR  +A+++F KM  +G EP+   F  ILTAC ++G V  A   F+SM   +  +PS
Sbjct: 327 AIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPS 386

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------------------------LL 464
           ++H+  +V+LL R G   +  +  +N   K                            L+
Sbjct: 387 IEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI 446

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
           Q+ P H   Y+ L++I+AA G W   ARVR  M+ + + K PG S I VNG  H F AG 
Sbjct: 447 QVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGD 506

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQ 581
             H   KEI   LE I+   RE+GY P    +L +++++++E A+  HSEKLA+ FGLI 
Sbjct: 507 ESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLIS 566

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T PG TI+IVK L +C DCH+++K  SK+  REI++RD TRFH FKDG C+C DYW
Sbjct: 567 TKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 622


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  383 bits (984), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 341/634 (53%), Gaps = 56/634 (8%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHIFN 98
           S  + + L+Q+HA  I            ++I   +   + IDYA ++F      N   +N
Sbjct: 28  SCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWN 87

Query: 99  VLIRGLAE--NSHFQS-CISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            ++R LAE  + H QS  +  F  ML    V+PNR T+P V K+ A  S L  G+ +H L
Sbjct: 88  TILRVLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           IVK G   D FV  +L  MYV       A+ +F +              V  +G  ++  
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV------------VDFDGSCQM-- 193

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                EL       NV  W  +IDG +R GD+K A  LF++MP++ VVSW  MI+G++QN
Sbjct: 194 -----ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQN 248

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G   +A+ +F +M  + +  N  T+VS L A A++GALE G  +H Y   N   +   +G
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLG 308

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           +ALVDMY+KCG+I+ A  VF    +++ +TW+A+I   A+HGR E AI +F  M  +G  
Sbjct: 309 SALVDMYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   ++ IL+AC ++G V+   +FF  M     ++P ++H+  +V+LL R G   +  +
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428

Query: 455 NSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAAEGR 486
             +N   +                            L++L P    SYV LSN+YA+ G 
Sbjct: 429 LIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGN 488

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGARE 544
           W+ VARVR  M+   I+KDPG S+IE++G +H F  E   H  AKEI + L ++    R 
Sbjct: 489 WEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRS 548

Query: 545 QGYMPGT-EWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY P T E  L+  ++E+  AL  HSEK+A+AFGLI T P   +KIVK L IC DCH+ 
Sbjct: 549 NGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHAS 608

Query: 604 MKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K  S I +R+I++RD  RFH F+ G+CSC DYW
Sbjct: 609 LKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 11/240 (4%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     ++SS+   N +T   ++  I    + +  + IH     + +     + + L+ 
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVD 313

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             S   SID AL +F+    +N   ++ +I   A +   +  I HF  M +  V PN + 
Sbjct: 314 MYSKCGSIDEALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           Y  +  + +   L+  GR     +VK  G++        + D+  + G    A ++    
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 191 PEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
           P +      ++W  L+  C      K+G  R A  L  + P  +  S+V+L + +   G+
Sbjct: 434 PIEPDD---VIWKALLGACKMHKNLKMGE-RVAETLMELAPHDS-GSYVALSNLYASLGN 488


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/648 (35%), Positives = 343/648 (52%), Gaps = 80/648 (12%)

Query: 38  IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I++  + + L QIHA  I    + +  A++ I     +S   H+ +DYA  IF+    +N
Sbjct: 30  INNCRTIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRN 89

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
              +N +IRG +E+   ++ I+  +F   +S   V PNR T+P V K+ A    +  G+ 
Sbjct: 90  CFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE----------TPEKNKSESVL 200
           +H L +K G   D FV  +L  MYV  G  + A  +F +          T  + +   ++
Sbjct: 150 IHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIV 209

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           LWNV+I                               DG+MR GD K A  LF++M ++ 
Sbjct: 210 LWNVMI-------------------------------DGYMRLGDCKAARMLFDKMRQRS 238

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSW  MI+G+S NG  + A+ +F +M    +R N  T+VS L A +++G+LE G  +H 
Sbjct: 239 VVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHL 298

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y   +   +   +G+AL+DMY+KCG IE A  VF     ++++TW+AMI G AIHG+   
Sbjct: 299 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGD 358

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI  F KM  +G  P    ++ +LTAC + G V+    +F  M     +EP ++H+  +V
Sbjct: 359 AIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMV 418

Query: 441 NLLSRVGQDSQGYQNSQNSFTK----------------------------LLQLKPKHPS 472
           +LL R G   +  +   N   K                            L+ + P    
Sbjct: 419 DLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSG 478

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKE 530
           +YV LSN+YA++G W +V+ +R  M+ + I+KDPG S I+++G +H F  E   H  AKE
Sbjct: 479 AYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKE 538

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I+S L +I    R  GY P T  VL N++EE KE  L  HSEK+A AFGLI T+PG  I+
Sbjct: 539 INSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIR 598

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L IC DCHS +K  SK+ +R+I +RD  RFH+F+DG+CSC DYW
Sbjct: 599 IVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/684 (32%), Positives = 359/684 (52%), Gaps = 76/684 (11%)

Query: 24   KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
            KP   +T  H++S   +S++    + IH  I+   + ++  +   L++      S+  A 
Sbjct: 428  KPGR-VTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQ 486

Query: 84   SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            ++F+    +++  +N +I G A++  +++    F  M    + P+ +T+  V     +  
Sbjct: 487  NVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPE 546

Query: 144  LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
             L LG+ +H  I +SG++ D  +   L +MY++ G  + A  VF     ++    V+ W 
Sbjct: 547  ALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRD----VMSWT 602

Query: 204  VLINGCSKIGYLRKAVELF------GMMPKKNVASWV----------------------- 234
             +I GC+  G   KA+ELF      G  P K+  S +                       
Sbjct: 603  AMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNS 662

Query: 235  ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                      +LI  + + G +  A E+F++MP + +VSW  +I G++QNG  + A+   
Sbjct: 663  GYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFA 722

Query: 285  FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +QM +  V  N F+ VS L+AC+   ALE G RVH  I          +G AL+ MYAKC
Sbjct: 723  YQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKC 782

Query: 345  GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            G+   A  VF    EK+++TW AMI   A HG   +A+ +F  M   G +PDG+ F +IL
Sbjct: 783  GSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSIL 842

Query: 405  TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN------- 455
            +AC ++G V      F SM  +Y + P+++H+  +V LL R    Q+++   N       
Sbjct: 843  SACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPD 902

Query: 456  -------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                               ++++    L+L  ++P+ Y+LLSN+YAA GRW DVA++R +
Sbjct: 903  AAVWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRV 962

Query: 497  MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
            M+ R I+K+PG S+IEV+  +H F A    H    EI+++L+ +     E GY P T+ V
Sbjct: 963  MEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHV 1022

Query: 555  LHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
            LH++ K  +E +L  HSE+LA+A+GLI+T PGT I+I K L ICGDCH+  K+ SK+  R
Sbjct: 1023 LHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGR 1082

Query: 614  EIVLRDT-RFHYFKDGTCSCRDYW 636
            EI+ RD+ RFH FK+G CSC DYW
Sbjct: 1083 EIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/476 (25%), Positives = 224/476 (47%), Gaps = 48/476 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT   I++  +S    +  ++IH+QII        R+   L+S       +  A  +F
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF 186

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
              +P+++  +N ++   A+ ++ + C+  F  M    + P+++TY  +  +  + S+L 
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H L V+ G+  D  V   L  M V+ G    A + F  T +++    V+++N LI
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRD----VVVYNALI 302

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLI---------------------DG-- 239
              ++ G+  +A E +  M    VA    +++S++                     DG  
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 240 ------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                       + R GDL KA ELF  MP++ ++SW A+I G+++  +  +A+ ++ QM
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
              GV+    T +  LSACA   A   G  +H  I  +     G +  AL++MY +CG++
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             A  VF  T+ +D+++W +MI G A HG YE A + F++M     EPD   F ++L+ C
Sbjct: 483 MEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
                ++L       +  +  ++  V     ++N+  R G      Q+++N F  L
Sbjct: 543 KNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGS----LQDARNVFHSL 593



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 206/433 (47%), Gaps = 47/433 (10%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSA 73
           ++ ++H+P    TE      +  + + K+L    ++IHAQ++   +     ++  LI+  
Sbjct: 13  DVSNTHQPRPTETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMY 72

Query: 74  SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
              +S+  A  +F     +++  +N LI   A+    +     F  M      PN++TY 
Sbjct: 73  VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
            +  +  S + L  G+ +H  I+K+G + D  V+  L  MY + G    A +VF     +
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR 192

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGF--------- 240
           +    V+ +N ++   ++  Y+++ + LFG M  + ++    ++++L+D F         
Sbjct: 193 D----VVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248

Query: 241 --------------------------MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                                     +R GD+  A + F+   ++ VV + A+I   +Q+
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQH 308

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G   +A   +++M   GV  N  T +S L+AC+   ALEAG  +H++IS +       IG
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+ MYA+CG++  A  +F    ++DL++W A+I G A      +A++ +K+M   G +
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 395 PDGTVFLAILTAC 407
           P    FL +L+AC
Sbjct: 429 PGRVTFLHLLSAC 441



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 10/209 (4%)

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T V+ L  C +   L    R+H  +     G    +   L++MY KC ++  A  VF E 
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
             +D+++W ++I   A  G  ++A Q F++M  +G  P+   +++ILTAC+   +++   
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 418 NFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
                 ++  Y  +P V++   ++++  + G   +  Q           + P+   SY  
Sbjct: 149 KIHSQIIKAGYQRDPRVQNS--LLSMYGKCGDLPRARQ-------VFAGISPRDVVSYNT 199

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           +  +YA +   K+   +   M    I  D
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMSSEGISPD 228


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  382 bits (982), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 224/639 (35%), Positives = 356/639 (55%), Gaps = 41/639 (6%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPK 92
           +SL++S  + + L QIH   I + +   S  T +LI   + S+  ++ YA  +   F   
Sbjct: 1   LSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEP 60

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +  +FN L+RG +E+    + ++ FV M+R   V P+  ++ FV K+V +   L  G  +
Sbjct: 61  DAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQM 120

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HC  +K G+E   FV   L  MY   G    A KVFDE  + N    ++ WN +I  C +
Sbjct: 121 HCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPN----LVAWNAVITACFR 176

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
              +  A E+F  M  +N  SW  ++ G+++ G+L+ A  +F +MP +  VSW+ MI G 
Sbjct: 177 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 236

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           + NG   ++   F ++  AG+  N+ ++   LSAC++ G+ E G  +H ++    +    
Sbjct: 237 AHNGSFNESFLYFRELQRAGMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIV 296

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
           ++  AL+DMY++CGN+  A LVF   +EK  +++WT+MI GLA+HG+ E+A++ F +M  
Sbjct: 297 SVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTA 356

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
            G  PDG  F+++L AC ++G ++   ++F  M+  Y IEP ++H+  +V+L  R G+  
Sbjct: 357 YGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQ 416

Query: 451 QGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
           + Y                            + ++    +L +L P +    VLLSN YA
Sbjct: 417 KAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYA 476

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMA 540
             G+WKDVA +R  M  + IKK   WS +EV   +++F AG  K  +  E H KL++I+ 
Sbjct: 477 TAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIIL 536

Query: 541 GAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
             + E GY P     L+++ +EEKE+ +  HSEKLALAF L + + G  I+IVK L IC 
Sbjct: 537 RLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICR 596

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCH++MK  SK+   EI++RD  RFH FKDG+CSCRDYW
Sbjct: 597 DCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 635


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 218/663 (32%), Positives = 347/663 (52%), Gaps = 93/663 (14%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           +A+ P +  K  + P+      H ISL+ +     Q+  I+A+II ++      +  +L+
Sbjct: 15  SALPPNSGTKPKNTPNR---RRHFISLLQNCKHNNQIPPIYAKIIRNHHHQDPFVVFELL 71

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
              S   SI YA  IF H    N++++  LI GL  + ++   I  +  M+  S+ P+  
Sbjct: 72  RVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLYYQMINSSLVPDSY 131

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
               V K+      L  GR +H  ++K G+  +  +R+ L ++Y + G    A +VFDE 
Sbjct: 132 AVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDE- 190

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                                             MP+++V +   +I+ +   G      
Sbjct: 191 ----------------------------------MPERDVVASTVMINYYFDHGI----- 211

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
                   K  V WTAMI+G  +NGE+ +AL +F  M    V  N+ T+V  LSAC+++G
Sbjct: 212 --------KDTVCWTAMIDGLVRNGESNRALEVFRNMQREDVMPNEVTIVCVLSACSELG 263

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           AL+ G  V +Y+  +   L   +G AL++MY++CG+I+ A  VF + KEK+++T+ +MI 
Sbjct: 264 ALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIM 323

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G A+HG+  +A++ F+ ++  G  P    F+ +L AC + G  +L    F SM  DY IE
Sbjct: 324 GFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIE 383

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH-------------------- 470
           P ++H+  +V+LL R+G+  + Y     SF +++++ P H                    
Sbjct: 384 PQIEHYGCMVDLLGRLGRLEEAY-----SFIRMMKVAPDHVMLGALLSACKIHGNLELAE 438

Query: 471 -------------PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
                          +Y+LLSN Y++ G+WK+ A VRT M+   I+K+PG S IEVN  +
Sbjct: 439 RVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVNNEI 498

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLA 574
           H F  G   H   ++I+ KLE++    R +GY P TE VLH+I K EKE AL  HSE+LA
Sbjct: 499 HEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSERLA 558

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           + +GLI T P TT+++VK L +C DCH  +K  S I++R+IV+RD  RFH+F++G CSC 
Sbjct: 559 ICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVCSCG 618

Query: 634 DYW 636
           DYW
Sbjct: 619 DYW 621


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 235/667 (35%), Positives = 344/667 (51%), Gaps = 114/667 (17%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           + + YA+S+F+     NL I+N + RG A +    S +  +V M+ L + PN  T+PF+ 
Sbjct: 11  EGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLL 70

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-- 194
           KS A L     G  +H  ++K G E D +V   L  MYVQ  +   A KVFD +  ++  
Sbjct: 71  KSCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVV 130

Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
                                      + V+ WN +I+G  + G  ++A+ELF  M K N
Sbjct: 131 SYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN 190

Query: 230 VA--------------------------SWVS-------------LIDGFMRKGDLKKAG 250
           V                           SW++             LID + + G+++ A 
Sbjct: 191 VRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETAC 250

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF  +  K V+SW  +I G++     ++AL +F +ML +G   ND T++S L ACA +G
Sbjct: 251 GLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLG 310

Query: 311 ALEAGVRVHNYISCNDFGLKG-----AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           A++ G  +H YI   D  LKG     ++ T+L+DMY+KCG+IEAA  VF     K L  W
Sbjct: 311 AIDIGRWIHVYI---DKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI+G A+HGR   A   F +M  +  +PD   F+ +L+AC ++G + L  + F SM  
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTH 427

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQ--------------------------------GY 453
           +Y I P ++H+  +++LL   G   +                                G 
Sbjct: 428 NYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGE 487

Query: 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
           + +QN    L +++P +P SYVLLSNIYA  GRW +VAR+R L+  + +KK PG S IE+
Sbjct: 488 KFAQN----LFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEI 543

Query: 514 NGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHS 570
           +  VH F  G   H   +EI+  LE++    +E G++P T  VL  ++EE KE AL  HS
Sbjct: 544 DSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHS 603

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGT 629
           EKLA+AFGLI T P T + IVK L +C +CH   K  SKI +REI+ RD TRFH+F+DG 
Sbjct: 604 EKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGV 663

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 664 CSCNDYW 670


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  382 bits (980), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 228/678 (33%), Positives = 361/678 (53%), Gaps = 76/678 (11%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           +++   SLI +S   + L QIH ++++  L  +  + T+L++ +S    I YA  +FD F
Sbjct: 55  SDSFYASLIDNSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEF 114

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
              ++ ++N +IR  + N+ ++  +  + +M    V P+  T+P+V K+   L    L  
Sbjct: 115 CYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSC 174

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  I+K G   D FV+  L  +Y + G    A  VFD    +    +++ W  +I+G 
Sbjct: 175 IIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHR----TIVSWTSIISGY 230

Query: 210 SKIGYLRKAVELFGMMPKKNV-ASWVSL------------------IDGFMRKGDLKK-- 248
           ++ G   +A+ +F  M    V   W++L                  I GF+ K  L+   
Sbjct: 231 AQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEP 290

Query: 249 ------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                             A   F+QM    V+ W AMI+G+++NG AE+A+ +F  M+  
Sbjct: 291 ALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISR 350

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            ++ +  TV SA+ A A+VG+LE    + +Y+S +++G    + T+L+DMYAKCG++E A
Sbjct: 351 NIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFA 410

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF    +KD++ W+AMI G  +HG+  +AI  +  M  +G  P+   F+ +LTAC +S
Sbjct: 411 RRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHS 470

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------ 452
           G VK     F  M+ D+ I P  +H++ VV+LL R G   +                   
Sbjct: 471 GLVKEGWELFHCMK-DFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGA 529

Query: 453 -------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                  Y+     + +  KL  L P +   YV LSN+YA+   W  VA VR LM+ + +
Sbjct: 530 LLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGL 589

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK- 559
            KD G+S IE+NG +  F  G   H +AKEI  +L+ +    +E G++P TE VLH++  
Sbjct: 590 NKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDELQRLERRLKEVGFVPYTESVLHDLNY 649

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EEKEE L  HSE++A+A+GLI T PGTT++I K L  C +CHS +K  SK+ +REI++RD
Sbjct: 650 EEKEENLSFHSERIAVAYGLISTAPGTTLRITKNLRACVNCHSAIKLISKLVEREIIVRD 709

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH+FKDG CSC DYW
Sbjct: 710 ANRFHHFKDGLCSCGDYW 727


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 223/672 (33%), Positives = 352/672 (52%), Gaps = 76/672 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           SLI  S     L QI+A++++  L     +  +L++ AS    +  A  +FD F   ++ 
Sbjct: 80  SLIDDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVF 139

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N ++R  + +  F   I  +  M    V P+  ++P V K+ ++L  L +GR +H  I
Sbjct: 140 LWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQI 199

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            + G E D FV+  L  +Y + G+   A  VF    ++    +++ W  +I+G ++ G  
Sbjct: 200 FRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR----TIVSWTSIISGYAQNGQP 255

Query: 216 RKAVELFGMMPKKNV-ASWVSLIDGFMRKGDLK--------------------------- 247
            +A+ +F  M K NV   W++L+       D++                           
Sbjct: 256 IEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISL 315

Query: 248 -----KAGEL------FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
                K G +      F Q+    ++ W AMI+G+ +NG AE+A+ +F  M    +R + 
Sbjct: 316 TSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDS 375

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            TV S+++ACA++G+LE    +  YIS ++F     + T+L+D YAKCG+++ A  VF  
Sbjct: 376 ITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDR 435

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             +KD++ W+AM+ G  +HG+  ++I  F  M  +G  P+   F+ +LTAC  SG V+  
Sbjct: 436 IPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEG 495

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------------ 458
            + F  MR DY IEP  +H+  VV+LL R G   + Y    N                  
Sbjct: 496 WDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACK 554

Query: 459 ----------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                     +  +L  L P +   YV LSN+YA+   W  VA+VR LM+ + + K  G+
Sbjct: 555 IHRHVTLGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGY 614

Query: 509 SYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEA 565
           S IE+NG +  F+AG   H  +KEI  ++ED+    +E G++P TE VLH++  EE EE 
Sbjct: 615 SVIEINGKLQAFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEET 674

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHY 624
           L  HSE+LA+A+GLI T PGTT++I K L  C +CH+ +K  SK+  REIV+RD  RFH+
Sbjct: 675 LCNHSERLAIAYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHH 734

Query: 625 FKDGTCSCRDYW 636
           FKDG CSC DYW
Sbjct: 735 FKDGACSCGDYW 746



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 129/307 (42%), Gaps = 30/307 (9%)

Query: 34  IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           ++S++ +    + L   + IH  +I   L     +   L S  +    +  A   F+   
Sbjct: 277 LVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVE 336

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             +L  +N +I G  +N + +  I  F  M   ++RP+ +T      + A +  L L R 
Sbjct: 337 NPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARW 396

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +   I  S    D  V   L D Y + G    A  VFD  P+K+    V++W+ ++ G  
Sbjct: 397 MDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKD----VVVWSAMMVGYG 452

Query: 211 KIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS--- 263
             G  R+++ LF  M +  V+    ++V L+      G +++  +LF +M + G+     
Sbjct: 453 LHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQ 512

Query: 264 -WTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
            +  +++   + G  ++A      M ++ GV                 GAL +  ++H +
Sbjct: 513 HYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSV--------------WGALLSACKIHRH 558

Query: 322 ISCNDFG 328
           ++  ++ 
Sbjct: 559 VTLGEYA 565


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 231/634 (36%), Positives = 340/634 (53%), Gaps = 56/634 (8%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHIFN 98
           S  + + L+Q+HA  I            ++I   +   + IDYA ++F      N   +N
Sbjct: 28  SCKTPRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWN 87

Query: 99  VLIRGLAE--NSHFQS-CISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            ++R LAE  + H QS  +  F  ML    V+PNR T+P V K+ A  S L  G+ +H L
Sbjct: 88  TILRILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGL 147

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           IVK G   D FV  +L  MYV       A+ +F +              V  +G  ++  
Sbjct: 148 IVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNV------------VDFDGSCQM-- 193

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                EL       NV  W  +IDG +R GD+K A  LF++MP + VVSW  MI+G++QN
Sbjct: 194 -----ELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQN 248

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G   +A+ +F +M  + +  N  T+VS L A A++GALE G  +H Y   N   +   +G
Sbjct: 249 GHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLG 308

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           +ALVDMY+KCG+I+ A  VF    +++ +TW+A+I   A+HGR E AI +F  M  +G  
Sbjct: 309 SALVDMYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVT 368

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   ++ IL+AC ++G V+   +FF  M     ++P ++H+  +V+LL R G   +  +
Sbjct: 369 PNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEE 428

Query: 455 NSQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAAEGR 486
             +N   +                            L++L P    SYV LSN+YA+ G 
Sbjct: 429 LIRNMPIEPDDVIWKALLGACKMHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGN 488

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGARE 544
           W+ VARVR  M+   I+KDPG S+IE++G +H F  E   H  AKEI + L ++    R 
Sbjct: 489 WEAVARVRLKMKGMDIRKDPGCSWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRS 548

Query: 545 QGYMPGT-EWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY P T E  L+  ++E+  AL  HSEK+A+AFGLI T P   +KIVK L IC DCH+ 
Sbjct: 549 NGYRPNTLEVFLNTDEQERARALQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHAS 608

Query: 604 MKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K  S I +R+I++RD  RFH F+ G+CSC DYW
Sbjct: 609 LKLISLIYKRQIIVRDRKRFHQFEHGSCSCMDYW 642



 Score = 40.0 bits (92), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 51/240 (21%), Positives = 99/240 (41%), Gaps = 11/240 (4%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     ++SS+   N +T   ++  I    + +  + IH     + +     + + L+ 
Sbjct: 254 AINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVD 313

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             S   SID AL +F+    +N   ++ +I   A +   +  I HF  M +  V PN + 
Sbjct: 314 MYSKCGSIDKALQVFETLPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVA 373

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           Y  +  + +   L+  GR     +VK  G++        + D+  + G    A ++    
Sbjct: 374 YIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNM 433

Query: 191 PEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
           P +      ++W  L+  C      K+G  R A  L  + P  +  S+V+L + +   G+
Sbjct: 434 PIEPDD---VIWKALLGACKMHKNLKMGE-RVAETLMELAPHDS-GSYVALSNLYASLGN 488


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/648 (35%), Positives = 356/648 (54%), Gaps = 54/648 (8%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFTPK 92
           ISL+    S  QL+QIH+  I   L +      ++I+    H+S  ++YA  +FD     
Sbjct: 11  ISLLEKCKSMYQLKQIHSHTIKMGLSSDPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHP 70

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           ++ I+N +I+G ++ SH ++ +S ++ ML  +++P+R T+PF  K       L  G+ L 
Sbjct: 71  SMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLKGFTRDMALQHGKELL 130

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
              VK G + + FV+     M+   G    A KVFD       +  V+ WN++++G +++
Sbjct: 131 NHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFD----MGDACEVVTWNIMLSGYNRV 186

Query: 213 GYLR--KAVELFGMMPKKNVASW----VSLIDG------FMRKGDLKKAGELFEQMPEKG 260
              +  K + +     K     W       I+G      F   G++ +A  +F+ M  + 
Sbjct: 187 KQFKISKMLLVLSACSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRD 246

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSWTAMI+G+ +      ALA+F +M  + V+ ++FT+VS L ACA +GALE G  V  
Sbjct: 247 VVSWTAMIDGYLRMNHFIGALALFREMQMSNVKPDEFTMVSILIACALLGALELGEWVKT 306

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            I  N       +G ALVDMY KCGN+  A  VF E  +KD  TWT MI GLAI+G  E+
Sbjct: 307 CIDKNSNKNDSFVGNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEE 366

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+  F  M+ +   PD   ++ +L AC     V    +FF +M   + I+P+V H+  +V
Sbjct: 367 ALAMFSNMIEASVTPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMV 422

Query: 441 NLLSRVG----------------------------QDSQGYQNSQNSFTKLLQLKPKHPS 472
           +LL  VG                            +  +  Q +  +  ++L+L+P++ +
Sbjct: 423 DLLGCVGCLEEALEVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGA 482

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            YVLL NIYAA  +W+++ +VR LM  R IKK PG S +E+NG+V+ F AG   H  +KE
Sbjct: 483 VYVLLCNIYAASKKWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKE 542

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I++KLE++M G  + GY P T  V  ++ EE KE AL  HSEKLA+A+ LI + PG TI+
Sbjct: 543 IYAKLENMMQGLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIR 602

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH + K  S+   RE++++D TRFH+F+ G+CSC ++W
Sbjct: 603 IVKNLRMCVDCHHMAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 238/662 (35%), Positives = 359/662 (54%), Gaps = 64/662 (9%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLI 70
           PT  + S   P  N   + +   I++  + + L QIHA  I    + +  A++ I     
Sbjct: 3   PTQTLYS---PGGNSPASSLFPQINTCRTIRDLSQIHAVFIKSGQIRDTLAAAEILRFCA 59

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRP 127
           +S   H+ +DYA  IF+    +N   +N +IRG +E+   ++ I+  +F   +S   + P
Sbjct: 60  TSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEP 119

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           NR T+P V K+ A    +  G+ +H L +K G   D FV  +L  MYV  G  + A  +F
Sbjct: 120 NRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLF 179

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
                KN  E  ++  ++I+   + G                V  W  +IDG+MR GD K
Sbjct: 180 ----YKNIIEREMV--MMIDRRKRDG---------------EVVLWNVMIDGYMRLGDCK 218

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSAC 306
            A  LF++M ++ VVSW  MI+G+SQNG  + A+ +F +M     +R N  T+VS L A 
Sbjct: 219 AARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAV 278

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           +++G+LE G  +H Y   +   +   +G+AL+DMY+KCG IE A +VF     ++++TW+
Sbjct: 279 SRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRENVITWS 338

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI G AIHG+   AI  F KM  +G  P    ++ +LTAC ++G V+    +F  M   
Sbjct: 339 AMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSV 398

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------------ 462
             +EP ++H+  +V+LL R+G   +  +   N   K                        
Sbjct: 399 DGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKALLGACRMHRNVEMGKR 458

Query: 463 ----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
               L+ + P    +YV LSN+YA++G W +V+ +R  M+   I+KDPG S+I+++G +H
Sbjct: 459 VANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLH 518

Query: 519 RF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLAL 575
            F  E   H  AKEI+S L +I    R  GY P T  VL N++EE KE AL  HSEK+A 
Sbjct: 519 EFLVEDDSHPRAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENALHYHSEKMAT 578

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGLI T+PG  I+IVK L IC DCHS +K  SK+ +R+I +RD  RFH+F+DG+CSC D
Sbjct: 579 AFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMD 638

Query: 635 YW 636
           YW
Sbjct: 639 YW 640


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 232/689 (33%), Positives = 363/689 (52%), Gaps = 80/689 (11%)

Query: 24  KPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--ID 80
           KPS+  T+   +  + +   S  + +Q HA ++  +L  +   +++LIS  +L  S  ++
Sbjct: 3   KPSSKCTKLISVDFLKTHCTSISKTKQAHALLLRTHLLHNPLFSSKLISFLALSHSGDLN 62

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           YA  +F      +  I N +IRG A + +    +S + FM+   V  +  TYPFV  + A
Sbjct: 63  YARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACA 122

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L  + LGR  HC ++K+G   D FV   L   Y   G    A  VFDE+  ++    V+
Sbjct: 123 RLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRD----VV 178

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPK-----KNVASWVSLI------------------ 237
            WN++IN     G   KA +L   M K      +  + VSL+                  
Sbjct: 179 TWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSY 238

Query: 238 -----------------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                            D + +  D++ A E+F ++ EK V+SWT+M++G +++G  ++A
Sbjct: 239 SKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEA 298

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           LA+F +M    +  ++ T+V  LSACA+ GAL+ G  +H  I   +      + TALVDM
Sbjct: 299 LALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDM 358

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAKCG+I+ A  VF   + +++ TW A+I GLA+HG  E AI  F +M +    PD   F
Sbjct: 359 YAKCGSIDLALQVFRRMRVRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTF 418

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460
           +A+L AC ++G V   L  F +M+  + IEP ++H+  VV+LL R  +        +N  
Sbjct: 419 IALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMP 478

Query: 461 TK----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
            K                            +++L+P     YV+LSN+YA   +W    +
Sbjct: 479 IKANSVLWATLLGACRSGGHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALK 538

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR-EQGYMP 549
           +R  M+ + I+K PG S+IE+NG +H+F AG   H   ++I++ +E++      + G++P
Sbjct: 539 LRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVP 598

Query: 550 GTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
           GT  VL +I +EEKE +L  HSEKLA+A GLI T  G+ I+IVK L +C DCHS +K  S
Sbjct: 599 GTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTS 658

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K+  REIV RD +RFH+FK+G+CSC D+W
Sbjct: 659 KVYNREIVARDRSRFHHFKEGSCSCMDFW 687


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  380 bits (976), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 231/629 (36%), Positives = 332/629 (52%), Gaps = 74/629 (11%)

Query: 46  QLRQIHAQIILHNLFASSRITTQL-----ISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           Q++Q HA+I++  L    RIT+ L     ISS+SL    DYALSI++  +   +   N +
Sbjct: 46  QIKQAHARILVLGLANDGRITSHLLAFLAISSSSLPS--DYALSIYNSISHPTVFATNNM 103

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           IR   +    +  IS +  M R  V  PN+ T  FV ++ ++   +  G  +   ++K G
Sbjct: 104 IRCFVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLG 163

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
              D FVR  L  +Y    +   A +VFDE P                            
Sbjct: 164 FVKDVFVRNALIHLYCTCCRVESAKQVFDEVPSS-------------------------- 197

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                   ++V SW S+I GF+R G +  A +LF +MPEK V+SW  +I+G  QNGE EK
Sbjct: 198 --------RDVVSWNSMIVGFVRLGQISVAQKLFVEMPEKDVISWGTIISGCVQNGELEK 249

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           AL  F ++ +  +R N+  +VS L+A A++G LE G R+H+  +   F +  ++GTALVD
Sbjct: 250 ALDYFKELGEQKLRPNEAILVSLLAAAAQLGTLEYGKRIHSIANSLRFPMTASLGTALVD 309

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAKCG I+ +  +F    EKD  +W  MI GLA HG  ++A+  F+K +  G  P    
Sbjct: 310 MYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATHGLGQEALALFEKFLTQGFHPVNVT 369

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------------ 447
           F+ +LTAC  +G V    +FF  M   Y IEP ++H+  +V+LLSR G            
Sbjct: 370 FIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEHYGCMVDLLSRAGFVYDAVEMINRM 429

Query: 448 ----------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                           Q     +  +    KL+Q+ P H   YV L+ I+A   +W+DV+
Sbjct: 430 PAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMDPTHNGHYVQLARIFARLRKWEDVS 489

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR LM  R+  K  GWS IE  G VHRF AG   H+   EI+  LE +       GY  
Sbjct: 490 KVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEHERTTEIYKMLEIMGVRIAAAGYSA 549

Query: 550 GTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
               VLH+I +EEKE A+  HSE+LA+AFGL+ T  G  I+I+K L +CGDCH + K  S
Sbjct: 550 NVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKDGDCIRIIKNLRVCGDCHEVSKIIS 609

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            + +REI++RD +RFH+FK G CSC+DYW
Sbjct: 610 LVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 222/628 (35%), Positives = 350/628 (55%), Gaps = 41/628 (6%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           + L QIH   I   +   S    +LI   + S+  ++ YA  +   F   +  +FN L+R
Sbjct: 186 RALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVR 245

Query: 103 GLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
           G +E+    + ++ FV M+R   + P+  ++ FV K+ A+   L  G  +HC  +K G++
Sbjct: 246 GYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLD 305

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
              FV   L  MY + G    A KVFDE P+ N    ++ WN ++  C +   +  A E+
Sbjct: 306 SHLFVATTLIGMYGECGCVGFARKVFDEMPQPN----LVAWNAVVTACFRGNDVSGAREI 361

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           F  M  +N  SW  ++ G+++ G+L+ A  +F +MP +  VSW+ MI GFS NG   ++ 
Sbjct: 362 FDKMLVRNHTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESF 421

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
           + F ++L A +R N+ ++   LSAC++ GA E G  +H ++  + +    ++  AL+DMY
Sbjct: 422 SYFRELLRAEMRPNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMY 481

Query: 342 AKCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           ++CGN+  A LVF G  +++ +++WT+MI GLA+HG  E+AI+ F +M  SG  PD   F
Sbjct: 482 SRCGNVPMARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISF 541

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------- 453
           +++L AC ++G +K    +F  M+  Y IEP+V+H+  +V+L  R G+  + Y       
Sbjct: 542 ISLLYACSHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMP 601

Query: 454 ---------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                + ++    +L +L P +    VLLSN+YA  G+WKDVA 
Sbjct: 602 IPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVAS 661

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAR-EQGYMP 549
           +R  M  + IKK   WS +EV   +++F A   K  +  E H KL++I+   R E GY P
Sbjct: 662 IRKSMIVQRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAP 721

Query: 550 GTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
                L+++ +EEKE+ +  HSEKLALAF L +   G  I+IVK L IC DCH++MK  S
Sbjct: 722 EVASALYDVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTS 781

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDY 635
           ++   EIV+RD  RFH FKDG+CSC DY
Sbjct: 782 RVYGVEIVIRDRNRFHSFKDGSCSCGDY 809


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/613 (35%), Positives = 331/613 (53%), Gaps = 73/613 (11%)

Query: 59  LFASSRITTQLISSASLHKS--IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
           LF      +++++  +LH S  + YA  +F+          N +IRG    +  +  I  
Sbjct: 6   LFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILF 65

Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
           +  M+   + P+R T+P + KS     +L  G+ LHC   K G   DA+++  L +MY  
Sbjct: 66  YQLMMLQGLDPDRFTFPSLFKSCG---VLCEGKQLHCHSTKLGFASDAYIQNTLMNMY-- 120

Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
                                            S  G L  A ++F  M  K+V SW ++
Sbjct: 121 ---------------------------------SNCGCLVSARKVFDKMVNKSVVSWATM 147

Query: 237 IDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           I  + +     +A +LF +M     +  W  MING  ++ + E+AL++F +M  +GV+ +
Sbjct: 148 IGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGD 207

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+ S L AC  +GALE G  +H YI      +  A+GTALVDMYAKCG+IE+A  VF 
Sbjct: 208 KVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQ 267

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E  EKD++TWTA+I GLA+ G+  +A++ F +M  S  +PD   F+ +L AC ++G V  
Sbjct: 268 EMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNE 327

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------- 458
            + +F+SM   Y I+PS++H+  +V++L R G+ ++     QN                 
Sbjct: 328 GIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSAC 387

Query: 459 -----------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                      +  +L++L PK+  +YVLLSNIY++   W+   ++R LM  R+IKK PG
Sbjct: 388 RIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPG 447

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEE 564
            S IEV G VH F  G   H  + EI+  L+D+M   +  GY+P    VL ++ E EKE 
Sbjct: 448 CSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKEN 507

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            L  HSEKLA+AFGL+ TTPGT I++VK L +C DCHS MK+ S++  REI++RD  RFH
Sbjct: 508 ELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFH 567

Query: 624 YFKDGTCSCRDYW 636
           +F  G+CSCRD+W
Sbjct: 568 HFTKGSCSCRDFW 580


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 220/659 (33%), Positives = 348/659 (52%), Gaps = 78/659 (11%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           P  N  S+ K   ++ +  IISL+  S    Q+  IHAQ+I +       +  +L+ S S
Sbjct: 33  PHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCS 92

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
              +IDYA  IF +    N++++  LI G   + ++   I  +  ML  S+ P+      
Sbjct: 93  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 152

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + K+  S   L  GR +H   +K G+  +  VR+ + ++Y + G+   A +VF+E P   
Sbjct: 153 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMP--- 209

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
             E V+   V+I+  S  G + +A  +F  + +K+   W ++IDGF+R            
Sbjct: 210 --EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVR------------ 255

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
                              N E  +AL  F  M    VR N+FT+V  LSAC+++GALE 
Sbjct: 256 -------------------NEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 296

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G  VH+Y+   +  L   +G AL++MY++CG+I+ A  VF E K++D++T+  MI GL++
Sbjct: 297 GRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM 356

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           +G+  QAI+ F+ M+     P    F+ +L AC + G V      F SM  DY +EP ++
Sbjct: 357 NGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIE 416

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH------------------------ 470
           H+  +V+LL RVG+  + Y        + +++ P H                        
Sbjct: 417 HYGCMVDLLGRVGRLEEAY-----DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAK 471

Query: 471 ---------PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
                      +YVLLS++YA+ G+WK+ A+VR  M+   ++K+PG S IEVN  +H F 
Sbjct: 472 VLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 531

Query: 522 AGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFG 578
            G   H   + I+ KLE++    R +GY P  E VL +I++ EKE AL  HSE+LA+ +G
Sbjct: 532 LGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYG 591

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           LI T P T I+++K L +C DCHS +K  +KI++R++V+RD  RFHYF++G CSC DYW
Sbjct: 592 LISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 254/739 (34%), Positives = 375/739 (50%), Gaps = 115/739 (15%)

Query: 9   LTTAIAPTT-NIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           +T++ +P+  +   +  P   I E H  ++L+    +    +QIH+ II   L  +  + 
Sbjct: 4   VTSSPSPSILHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGLNNTVFVQ 63

Query: 67  TQLISSASLHKSID--YALSIFD---HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
           ++LI   ++  S D  YALS+F+        N+ I+N LIRG + +S   S +  F  ML
Sbjct: 64  SKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRML 123

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK-- 179
              V+PN  T+PF+ KS         G+ LH   +K  + ++  V   +  MY  +G+  
Sbjct: 124 YYGVQPNSHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMD 183

Query: 180 -------------------------TRG----AFKVFDETPEKNKSESVLLWNVLINGCS 210
                                    ++G    A ++FDE P K+    V+ WN +I+G  
Sbjct: 184 FARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKD----VVSWNAMISGYV 239

Query: 211 KIGYLRKAVELFGMMPKKNV--------------------------ASWV---------- 234
           + G   +A+  F  M + NV                           SWV          
Sbjct: 240 QSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQ 299

Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              +LID + + G+   A ELF+ + EK V+SW  MI G+S     E+ALA+F  ML + 
Sbjct: 300 LTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSN 359

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAA 350
           V+ ND T +  L ACA +GAL+ G  VH YI  N      A + T+L+DMYAKCG IEAA
Sbjct: 360 VKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAA 419

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
             VF     ++L +W AM+ G A+HG  E+A+  F +M+  G   PD   F+ +L+AC  
Sbjct: 420 ERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQ 479

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------- 452
           +G V L   +F SM  DY I P ++H+  +++LL+R  +  +                  
Sbjct: 480 AGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWG 539

Query: 453 -----------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                       +  +    +L QL+P++  ++VLLSNIYA  GRW DVAR+RT +  + 
Sbjct: 540 SLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKG 599

Query: 502 IKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
           +KK PG + IE++G VH F  G   H     I+  L ++     E G++P T  VL+++ 
Sbjct: 600 MKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMD 659

Query: 560 EE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           EE KE AL  HSEKLA++FGLI+T PGTTI+IVK L +CG+CHS  K  SKI  REI+ R
Sbjct: 660 EEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIAR 719

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D  RFH+FKDG CSC D W
Sbjct: 720 DRNRFHHFKDGFCSCNDCW 738



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 155/352 (44%), Gaps = 25/352 (7%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   AI     ++ ++   N  T   ++S    + S +  + I + +  +   ++ ++T 
Sbjct: 243 RFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTN 302

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI         D A  +FD    K++  +N +I G +  S ++  ++ F  MLR +V+P
Sbjct: 303 ALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKP 362

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           N +T+  +  + A L  L LG+ +H  I K+     +A +   L DMY + G    A +V
Sbjct: 363 NDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERV 422

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-----ASWVSLIDGFM 241
           F     +N +     WN +++G +  G+  +A+ LF  M  K +      ++V ++    
Sbjct: 423 FRSMHSRNLAS----WNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACT 478

Query: 242 RKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           + G +    + F  M +   +S     +  MI+  ++  + E+A  +   M +  +  + 
Sbjct: 479 QAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEIL---MKNMEMEPDG 535

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV---DMYAKCG 345
               S LSAC   G +E G     Y++   F L+     A V   ++YA  G
Sbjct: 536 AIWGSLLSACKAHGRVEFG----EYVAERLFQLEPENAGAFVLLSNIYAGAG 583


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  379 bits (973), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 343/645 (53%), Gaps = 90/645 (13%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK-NLH 95
           LI +S ST  L QIHA ++   L     +  +L  S +    + +++++F H TP  N+ 
Sbjct: 29  LIDNSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLF-HRTPNPNVF 87

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++  +I   A    F   +S++  ML   ++PN  T   + K+      L   R +H   
Sbjct: 88  LWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHA 143

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           +K G+    +V   L D Y + G    A K                              
Sbjct: 144 IKFGLSSHLYVSTGLVDAYARGGDVASAQK------------------------------ 173

Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                LF  MP++++ S+ +++  + + G L +A  LFE M  K VV W  MI+G++Q+G
Sbjct: 174 -----LFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHG 228

Query: 276 EAEKALAMFFQMLDAG-------VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
              +AL  F +M+          VR N+ TVV+ LS+C +VGALE G  VH+Y+  N   
Sbjct: 229 CPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIK 288

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           +   +GTALVDMY KCG++E A  VF   + KD++ W +MI G  IHG  ++A+Q F +M
Sbjct: 289 VNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEM 348

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G +P    F+A+LTAC ++G V      FDSM+  Y +EP V+H+  +VNLL R G+
Sbjct: 349 CCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGR 408

Query: 449 DSQGYQNSQNSFTKLLQLKPK---------------------------------HPSSYV 475
             + Y        + ++++P                                     +YV
Sbjct: 409 MQEAYD-----LVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYV 463

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
           LLSN+YAA   W  VA+VR++M+   ++K+PG S IEV   VH F AG   H  +K+I+S
Sbjct: 464 LLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYS 523

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
            LE +    +E+ Y P T+ VLH+I E EKE++L  HSEKLALAFGLI T+PG  IKIVK
Sbjct: 524 MLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVK 583

Query: 593 KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L +C DCH++MK  SKIS R+I++RD  RFH+F++G+CSCRDYW
Sbjct: 584 NLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 213/652 (32%), Positives = 348/652 (53%), Gaps = 71/652 (10%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S+  P   ++   +   +   N  K   Q+HA ++L  L  ++ + +++++  +    ID
Sbjct: 63  SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDID 122

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            ++S+F+     +  +FN +IR  A     +  ++ +  M       +  T+PFV KS  
Sbjct: 123 SSVSVFNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSV 182

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L  + +G+ +H LI++ G+++D +V   L  +Y + G+   A KVFD            
Sbjct: 183 ELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN----------- 231

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
                                   M  ++V+SW +L+ G+ + G +  A  +FE+MP + 
Sbjct: 232 ------------------------MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 267

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRV 318
           +VSWT MI+G+SQ+G A++AL++F +M+  D+GVR N  T++S L ACA++  LE G ++
Sbjct: 268 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 327

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHG 376
           H            ++  AL  MYAKCG++  A   F +    EK+L+ W  MI   A +G
Sbjct: 328 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 387

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
              QA+  F++M+ +G +PD   F  +L+ C +SG V + L +F+ M   Y I P V+H+
Sbjct: 388 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 447

Query: 437 TVVVNLLSRVGQDSQG----------------------------YQNSQNSFTKLLQLKP 468
             V +LL R G+ ++                              + ++ +  KL  L+P
Sbjct: 448 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEP 507

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHK 526
           ++  +YVLLSN+YA  GRW++V ++R +++ +  KK PG S+IE+NG  H F  G   H 
Sbjct: 508 ENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHP 567

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPG 585
             KEI+  LE +    +  GY P T +VLH+I +EEKE  L  HSEKLA+AFG++ T   
Sbjct: 568 QGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAE 627

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T +++ K L ICGDCH+ M + S+I  RE+++RD  RFH+FK G CSC DYW
Sbjct: 628 TVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 235/671 (35%), Positives = 355/671 (52%), Gaps = 74/671 (11%)

Query: 36   SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
            S I S+++ + ++ +H         +  RI   LI   +   SID A  +FD    +++ 
Sbjct: 431  SAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVI 490

Query: 96   IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
             +N ++ GLA+N       + F+ M +  + P+  TY  +  +  S   L     +H   
Sbjct: 491  SWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHA 550

Query: 156  VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            V++G+  D  V      MY++ G    A  +FD+   ++    V  WN +I G ++    
Sbjct: 551  VETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRH----VTTWNAMIGGAAQQRCG 606

Query: 216  RKAVELFGMMPKK----------NVAS---------WV-------------------SLI 237
            R+A+ LF  M ++          N+ S         WV                   +L+
Sbjct: 607  REALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNALV 666

Query: 238  DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
              + + G++K A ++F+ M E+ V +WT MI G +Q+G    A + F QML  G+  +  
Sbjct: 667  HTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDAT 726

Query: 298  TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
            T VS LSACA  GALE    VHN+           +G ALV MYAKCG+I+ A  VF + 
Sbjct: 727  TYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM 786

Query: 358  KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
             E+D+ +WT MI GLA HGR  +A+ +F KM   G +P+G  ++A+LTAC ++G V    
Sbjct: 787  VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGR 846

Query: 418  NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------------- 452
              F SM  DY IEP+++H+T +V+LL R G   +                          
Sbjct: 847  RQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT 906

Query: 453  YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
            Y N   ++ +  + L+LKPK  S+YVLLSNIYAA G+W+    VR++MQR+ I+K+PG S
Sbjct: 907  YGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRS 966

Query: 510  YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEAL 566
            +IEV+  +H F  G   H  +KEI+++L D++   + +GY+P T  VL N  +E KE+AL
Sbjct: 967  WIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQAL 1026

Query: 567  GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
              HSEKLA+ +GL+ T     I++ K L +C DCH+  K+ SKI+ REIV RD  RFH+F
Sbjct: 1027 CSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHF 1086

Query: 626  KDGTCSCRDYW 636
            KDG CSC DYW
Sbjct: 1087 KDGVCSCGDYW 1097



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 191/403 (47%), Gaps = 53/403 (13%)

Query: 48  RQIHAQIIL----HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           +Q+H  II      NL+ ++++    I    L      A  +FD    KN++I+  +I G
Sbjct: 138 KQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQ----CARQVFDKLLKKNIYIWTTMIGG 193

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            AE  H +  +  +  M +   +PN +TY  + K+      L  G+ +H  I++SG + D
Sbjct: 194 YAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSD 253

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
             V   L +MYV+ G    A  +FD+  E+N    V+ W V+I G +  G  ++A  LF 
Sbjct: 254 VRVETALVNMYVKCGSIEDAQLIFDKMVERN----VISWTVMIGGLAHYGRGQEAFHLFL 309

Query: 224 MMPKK----NVASWVSLIDG-----------------------------------FMRKG 244
            M ++    N  ++VS+++                                    + + G
Sbjct: 310 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 369

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL- 303
            +  A  +F+ M E+ + SWT MI G +Q+G  ++A ++F QM   G   N  T +S L 
Sbjct: 370 SIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILN 429

Query: 304 -SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
            SA A   ALE    VH +     F     IG AL+ MYAKCG+I+ A LVF    ++D+
Sbjct: 430 ASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDV 489

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           ++W AM+ GLA +G   +A   F +M   G  PD T +L++L 
Sbjct: 490 ISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 187/392 (47%), Gaps = 54/392 (13%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHF 117
           + + L+S   +  S  Y LSI   F        P  L   N  + G AE +H        
Sbjct: 43  VGSTLLSGRQMRHSRLYFLSISGCFKSEKHKYLPSVLVCANASVDGAAEQTHNVITAKDA 102

Query: 118 VFMLRLSVRP----NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
           V ML++ V+     +  +Y  + +       + L + +H  I+KSG+E + +V   L  +
Sbjct: 103 VAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRV 162

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----- 228
           Y++ G+ + A +VFD+  +KN    + +W  +I G ++ G+   A+ ++  M ++     
Sbjct: 163 YIRCGRLQCARQVFDKLLKKN----IYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 229 ----------------------------------NVASWVSLIDGFMRKGDLKKAGELFE 254
                                             +V    +L++ +++ G ++ A  +F+
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFD 278

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           +M E+ V+SWT MI G +  G  ++A  +F QM   G   N +T VS L+A A  GALE 
Sbjct: 279 KMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEW 338

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
              VH++       L   +G ALV MYAK G+I+ A +VF    E+D+ +WT MI GLA 
Sbjct: 339 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQ 398

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           HGR ++A   F +M  +G  P+ T +L+IL A
Sbjct: 399 HGRGQEAFSLFLQMQRNGCLPNLTTYLSILNA 430



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 186/421 (44%), Gaps = 45/421 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT   I+       + K  ++IHA II     +  R+ T L++      SI+ A  IF
Sbjct: 218 NEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIF 277

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +N+  + V+I GLA     Q     F+ M R    PN  TY  +  + AS   L 
Sbjct: 278 DKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALE 337

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             + +H   V +G+  D  V   L  MY + G    A  VFD   E++    +  W V+I
Sbjct: 338 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERD----IFSWTVMI 393

Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLID-----------------------G 239
            G ++ G  ++A  LF  M +     N+ +++S+++                       G
Sbjct: 394 GGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAG 453

Query: 240 FM--------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
           F+              + G +  A  +F+ M ++ V+SW AM+ G +QNG   +A  +F 
Sbjct: 454 FISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFL 513

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QM   G+  +  T +S L+      ALE    VH +           +G+A + MY +CG
Sbjct: 514 QMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCG 573

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           +I+ A L+F +   + + TW AMI G A      +A+  F +M   G  PD T F+ IL+
Sbjct: 574 SIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILS 633

Query: 406 A 406
           A
Sbjct: 634 A 634



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 120/258 (46%), Gaps = 13/258 (5%)

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
           A+ A+AM    +  G+  + F+ V+ L  C K   +    +VH  I  +       +   
Sbjct: 99  AKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANK 158

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ +Y +CG ++ A  VF +  +K++  WT MI G A +G  E A++ + KM     +P+
Sbjct: 159 LLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPN 218

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
              +L+IL AC     +K        +    F +  V+  T +VN+  + G      +++
Sbjct: 219 EITYLSILKACCCPVNLKWGKKIHAHIIQSGF-QSDVRVETALVNMYVKCGS----IEDA 273

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV-NG 515
           Q  F K+++   ++  S+ ++    A  GR ++   +   MQR     +  ++Y+ + N 
Sbjct: 274 QLIFDKMVE---RNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNS-YTYVSILNA 329

Query: 516 HVHRFEAGGHKLAKEIHS 533
           +     AG  +  KE+HS
Sbjct: 330 NA---SAGALEWVKEVHS 344


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 216/581 (37%), Positives = 311/581 (53%), Gaps = 68/581 (11%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           MLR  V P++ ++  + +S A      LG   HC I+K G EYD  ++  L D Y ++G 
Sbjct: 1   MLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGD 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
            + A +VF   P ++    V+  N +I+  SK GY+ +A  LF  M ++N  SW S+I  
Sbjct: 61  LKCAKRVFMGMPRRD----VVANNAMISALSKHGYVEEARNLFDNMTERNSCSWNSMITC 116

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS--------------------------- 272
           + + GD+  A  +F+  P K VVSW A+I+G+                            
Sbjct: 117 YCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTM 176

Query: 273 -----QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
                Q GE   A++MF QM    V+  + T+VS LSACA +GAL+ G  +H YI     
Sbjct: 177 ISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRL 236

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
            +   +G AL+DMY KCG +EAA  VF     K++  W ++I GL ++GR E+AI  F  
Sbjct: 237 KIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIV 296

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M   G +PDG  F+ IL+ C +SG +     +F  M   Y +EP V+H+  +V+LL R G
Sbjct: 297 MEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAG 356

Query: 448 ----------------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
                                       Q  +  +  +    +LL+L P    +YV LSN
Sbjct: 357 YLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVFLSN 416

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLED 537
           +YA+  RW DV   R LM +R + K PG S IEVN  VH F AG   H    +I++ L++
Sbjct: 417 LYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAFLDE 476

Query: 538 IMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           I    + QG++P T  VLH+I+EE KE A+  HSE++A+AFGL+ T PG TI++VK L  
Sbjct: 477 IAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKNLRT 536

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           C DCHS MK  S   +REI++RD  RFH+F++G+CSC DYW
Sbjct: 537 CSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 577



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 16/226 (7%)

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           + +N   +N +I    +   F + IS F  M   +V+P  +T   +  + A L  L +G 
Sbjct: 166 SARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGE 225

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  I    ++ D  +   L DMY + G    A  VF     KN    +  WN +I G 
Sbjct: 226 WIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKN----IFCWNSIIVGL 281

Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM-----PEKG 260
              G   +A+  F +M K+ +     ++V ++ G    G L      F +M      E G
Sbjct: 282 GMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPG 341

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           V  +  M++   + G  ++AL +   M    ++ N   + S L AC
Sbjct: 342 VEHYGCMVDLLGRAGYLKEALELIRAM---PMKPNSMVLGSLLRAC 384



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 98/249 (39%), Gaps = 37/249 (14%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           TAI+    ++S +     +T   ++S      +      IH  I    L     +   LI
Sbjct: 188 TAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALI 247

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
                  +++ A+ +F   + KN+  +N +I GL  N   +  I+ F+ M +  ++P+ +
Sbjct: 248 DMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 307

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+  +    +   LLS G                  + + ++M    G   G        
Sbjct: 308 TFVGILSGCSHSGLLSAG------------------QRYFSEMLGVYGLEPG-------- 341

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                   V  +  +++   + GYL++A+EL   MP K  +    ++   +R   + K  
Sbjct: 342 --------VEHYGCMVDLLGRAGYLKEALELIRAMPMKPNS---MVLGSLLRACQIHKDT 390

Query: 251 ELFEQMPEK 259
           +L EQ+ ++
Sbjct: 391 KLGEQVTQQ 399


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 228/697 (32%), Positives = 377/697 (54%), Gaps = 76/697 (10%)

Query: 12   AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
            A+    ++ +S    + +T   +++++   N  +  +QIH  ++   L     +   LI+
Sbjct: 919  AVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLIN 978

Query: 72   SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
                  S+  A S+F      +L  +N +I G   +   +  +  FV +LR S+ P++ T
Sbjct: 979  MYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFT 1038

Query: 132  YPFVSKSVASLSL-LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
               V ++ +SL     L   +H   +K+GV  D+FV   L D+Y + GK   A  +F   
Sbjct: 1039 VASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLF--- 1095

Query: 191  PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK---------------------- 228
                    +  WN +++G    G   KA+ L+ +M +                       
Sbjct: 1096 -VNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGL 1154

Query: 229  ---------------NVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                           N+  +V+  ++D +++ G+++ A  +F ++P    V+WT MI+G 
Sbjct: 1155 KQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGC 1214

Query: 272  SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
             +NG+ E AL  + QM  + V+ +++T  + + AC+ + ALE G ++H  I   +     
Sbjct: 1215 VENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDP 1274

Query: 332  AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
             + T+LVDMYAKCGNIE A  +F  T  + + +W AMI GLA HG  ++A+Q+FK M   
Sbjct: 1275 FVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSR 1334

Query: 392  GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--- 448
            G  PD   F+ +L+AC +SG V  A   F SM+ +Y IEP ++H++ +V+ LSR G+   
Sbjct: 1335 GVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEE 1394

Query: 449  -----DSQGYQNSQNSF--------------------TKLLQLKPKHPSSYVLLSNIYAA 483
                  S  ++ S + +                     KLL L+P   ++YVLLSN+YAA
Sbjct: 1395 AEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAA 1454

Query: 484  EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
              +W++VA  R +M++ ++KKDPG+S++++   VH F AG   H+    I++K+E IM  
Sbjct: 1455 ANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKR 1514

Query: 542  AREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
             RE+GY+P T++ L +++EE KE +L  HSEKLA+A+GL++T P TT++++K L +CGDC
Sbjct: 1515 IREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDC 1574

Query: 601  HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            HS +KY SK+ +REIVLRD  RFH+F++G CSC DYW
Sbjct: 1575 HSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDYW 1611



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/375 (25%), Positives = 165/375 (44%), Gaps = 19/375 (5%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLA 105
            ++ HA+I+         +T  LI+  +   S+  A  +FD    T ++L  +N ++  LA
Sbjct: 676  KRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALA 735

Query: 106  ENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             ++       H   +LR SV    R T   V K     +  S    LH   VK G+++D 
Sbjct: 736  AHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDV 795

Query: 165  FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-- 222
            FV   L ++Y + G  R A  +FD    ++    V+LWNV++          +A+ LF  
Sbjct: 796  FVAGALVNIYAKFGLIREARVLFDGMAVRD----VVLWNVMMKAYVDTCLEYEAMLLFSE 851

Query: 223  ----GMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAMINGFS 272
                G  P     + ++  V      +     K          + G  V+ W   ++ F 
Sbjct: 852  FHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFL 911

Query: 273  QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
            Q GEA +A+  F  M+++ V  +  T V  L+  A +  LE G ++H  +  +      +
Sbjct: 912  QRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVS 971

Query: 333  IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
            +G  L++MY K G++  A  VFG+  E DL++W  MI G  + G  E ++  F  ++   
Sbjct: 972  VGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDS 1031

Query: 393  TEPDGTVFLAILTAC 407
              PD     ++L AC
Sbjct: 1032 LLPDQFTVASVLRAC 1046



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 150/332 (45%), Gaps = 19/332 (5%)

Query: 79   IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYP 133
            I  A  +FD    +++ ++NV+++     ++  +C+ +   +L     R   RP+ +T  
Sbjct: 811  IREARVLFDGMAVRDVVLWNVMMK-----AYVDTCLEYEAMLLFSEFHRTGFRPDDVTLR 865

Query: 134  FVSKSVAS----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
             +S+ V      L L         L +      D  V       ++Q G+   A   F +
Sbjct: 866  TLSRVVKCKKNILELKQFKAYATKLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVD 925

Query: 190  TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGD 245
                  +   L + V++   + +  L    ++ G++ +  +   VS    LI+ +++ G 
Sbjct: 926  MINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGS 985

Query: 246  LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
            + +A  +F QM E  ++SW  MI+G + +G  E ++ MF  +L   +  + FTV S L A
Sbjct: 986  VSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRA 1045

Query: 306  CAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
            C+ + G      ++H         L   + TAL+D+Y+K G +E A  +F      DL +
Sbjct: 1046 CSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLAS 1105

Query: 365  WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
            W A++ G  + G + +A++ +  M  SG   D
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGERSD 1137



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 126/316 (39%), Gaps = 74/316 (23%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  + +++A+ S LSLG+  H  I+ SG   D FV  +L  MY + G    A K+FD TP
Sbjct: 660 FSILRQAIAA-SDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSSARKLFDTTP 718

Query: 192 EKNKSESVLLWNVLINGC------SKIGY-----LRKAVE--------------LFGMMP 226
           + N+   ++ WN +++        S  G+     LR++V               L    P
Sbjct: 719 DTNR--DLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSASP 776

Query: 227 KKNVA----------SWV-----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
             + +           W      +L++ + + G +++A  LF+ M  + VV W  M+  +
Sbjct: 777 SASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMKAY 836

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTV--VSALSACAKVGALEAGVRVHNYISCNDFGL 329
                  +A+ +F +    G R +D T+  +S +  C K           N +    F  
Sbjct: 837 VDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKK-----------NILELKQF-- 883

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
             A  T L  MY   G+              D++ W   +      G   +A+  F  M+
Sbjct: 884 -KAYATKLF-MYDDDGS--------------DVIVWNKALSRFLQRGEAWEAVDCFVDMI 927

Query: 390 YSGTEPDGTVFLAILT 405
            S    DG  F+ +LT
Sbjct: 928 NSRVACDGLTFVVMLT 943


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  378 bits (971), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 238/672 (35%), Positives = 350/672 (52%), Gaps = 103/672 (15%)

Query: 68  QLISSASLHKSID---YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           QLI  + L    D   YA+SIF+     NL I+N + RG A NS   + +  +V M+ L 
Sbjct: 1   QLIEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLG 60

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + PN  ++PF+ KS A    L  G+ +H  ++K G + D +V   L  MY Q G+   A 
Sbjct: 61  LLPNSYSFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAH 120

Query: 185 KVFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRK 217
           KVFD +  ++                             + V+ WN +I+G  +    ++
Sbjct: 121 KVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKE 180

Query: 218 AVELFGMMPKKNVA--------------------------SWVS-------------LID 238
           A+EL+  M K NV                           SW+              LID
Sbjct: 181 ALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLID 240

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + + G+++ A  LF+ + +K V+SW  +I G +     ++AL +F +ML +G   ND T
Sbjct: 241 LYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVT 300

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGE 356
           ++S L ACA +GA++ G  +H YI+    G+  A  + T+L+DMYAKCG+IEAA  VF  
Sbjct: 301 MLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDS 360

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              + L +W AMI+G A+HG+   A   F KM  +G +PD   F+ +L+AC +SG + L 
Sbjct: 361 MLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLG 420

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------------------QDSQ 451
            + F SM  DY I P ++H+  +++LL   G                         +  +
Sbjct: 421 RHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACK 480

Query: 452 GYQNSQ--NSFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
            + N +   S+ + L++++P++P SYVLLSNIYA  GRW  VA++RTL+  + IKK PG 
Sbjct: 481 MHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGC 540

Query: 509 SYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEA 565
           S IE++  VH F  G   H   +EI+  LE++     E G++P T  VL  ++EE KE A
Sbjct: 541 SSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGA 600

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHY 624
           L  HSEKLA+AFGLI T PGT + IVK L +C +CH   K  SKI +REI+ RD TR H 
Sbjct: 601 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHL 660

Query: 625 FKDGTCSCRDYW 636
            KDG  SC DYW
Sbjct: 661 LKDGVWSCHDYW 672



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 129/308 (41%), Gaps = 19/308 (6%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K++ KP  +   T ++S    S S +  RQ+H+ I  H   ++ +I   LI   S    
Sbjct: 189 MKTNVKPDESTMVT-VVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGE 247

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +F     K++  +N LI G    + ++  +  F  MLR    PN +T   V  +
Sbjct: 248 VETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 307

Query: 139 VASLSLLSLGRGLHCLIVK--SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            A L  + +GR +H  I K   GV   + +   L DMY + G    A +VFD    ++ S
Sbjct: 308 CAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLS 367

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGEL 252
                WN +I G +  G    A +LF  M K  +     ++V L+      G L     +
Sbjct: 368 S----WNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHI 423

Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           F  M +   ++     +  MI+     G  ++A  M   M    +  +     S L AC 
Sbjct: 424 FRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTM---PMEPDGVIWCSLLKACK 480

Query: 308 KVGALEAG 315
               +E G
Sbjct: 481 MHNNVELG 488


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/665 (33%), Positives = 352/665 (52%), Gaps = 71/665 (10%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKNLH 95
           + +  + ++  Q+HA  I         ++++L++  +  +  ++ YA S+FD      L 
Sbjct: 22  LQNCGTEREANQLHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLV 81

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +N+LI+   EN      I+ F  +L     P+  T P V K  A L  L  G+ +H L+
Sbjct: 82  SWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLGALQEGKQIHGLV 140

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--------------------------- 188
           +K G   D FV   L  MY + G+     KVFD                           
Sbjct: 141 LKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELAL 200

Query: 189 ----ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
               E PEK+       W +LI+G SK G L  A ++F  MP +N  SW ++I+G+M+ G
Sbjct: 201 EMFEEMPEKDS----FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAG 256

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           D   A ELF+QMPE+ +V+W +MI G+ +N +  KAL +F  ML   +  N  T++ A+S
Sbjct: 257 DSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGAVS 316

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           A + + +L  G  VH+YI  + F   G +GT L++MY+KCG++++A  VF    +K L  
Sbjct: 317 AASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGH 376

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           WT++I GL +HG  EQ ++ F +M  +G +P    F+ +L AC ++G  + A  +F  M 
Sbjct: 377 WTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMT 436

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------------- 462
           +DY I+PS++H+  ++++L R G   +     +    K                      
Sbjct: 437 YDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMG 496

Query: 463 ------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
                 L+ L P     YV+LSN+YAA G W+ V +VR +M+++ +KKDPG S IE  G 
Sbjct: 497 EYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGS 556

Query: 517 VHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE--EKEEALGCHSEK 572
           +H F  G   H   +EI+ KL ++       G++P T  VL  ++E  EKE  L  HSE+
Sbjct: 557 IHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSER 616

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AFGL+    G+ I+I+K L IC DCH++ K  S I  REI++RD +RFH+FK G+CS
Sbjct: 617 LAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCS 676

Query: 632 CRDYW 636
           C+D+W
Sbjct: 677 CKDFW 681


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/681 (33%), Positives = 355/681 (52%), Gaps = 75/681 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N    T I+ L+ S    +    +HA I      +++ + T LI + ++  S++ A   F
Sbjct: 40  NPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAF 99

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K++  +  ++   AEN  FQ  +  F  M  +   PN  T+  V K+   L   S
Sbjct: 100 DAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFS 159

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +G+ +H  ++K+  E D +V V L D+Y + G      +VF+E P+ +    V+ W+ +I
Sbjct: 160 VGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHD----VIPWSFMI 215

Query: 207 NGCSKIGYLRKAVELFGMMPKK-------------------------------------- 228
           +  ++    R+AVELFG M +                                       
Sbjct: 216 SRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD 275

Query: 229 -NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
            NV    +L+D + + G L  + +LF ++P +  V+W  MI G+ Q+G+ +KAL+++  M
Sbjct: 276 GNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           L+  V+A++ T  S L ACA + A+E G ++H+      +     +G AL+DMYAKCG+I
Sbjct: 336 LECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSI 395

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + A LVF    E+D ++W AMI G ++HG   +A++ F+ M  +   P+   F++IL+AC
Sbjct: 396 KNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSAC 455

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------- 458
             +G + +  N+F SM  DY IEP ++H+T +V LL R G   +  +  +          
Sbjct: 456 SNAGLLDIGQNYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKV 515

Query: 459 -------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                              S  ++LQ+ P+  +++VLLSNIYA   RW  VA VR  M+ 
Sbjct: 516 WRALLGACVIHNDVDLGIMSAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKN 575

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + +KK+PG S+IE  G VH F  G   H   K I   LE +     + GY+P    VL +
Sbjct: 576 KGVKKEPGLSWIENQGIVHYFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRD 635

Query: 558 IKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           +++ EK+  L  HSE+LALAFGLI+T     I+I+K L IC DCHS +K  SKI QR+I+
Sbjct: 636 VEDDEKKRHLWVHSERLALAFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDII 695

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+F+DG CSC DYW
Sbjct: 696 IRDMNRFHHFQDGICSCGDYW 716



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 75/152 (49%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MP++  VS+  +I G+ Q+ + ++ + +F ++   G   N F   + L     V   E  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             +H  I          +GTAL+D YA CG++ +A   F     KD+++WT M+   A +
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            R++ ++Q F +M   G  P+   F  +L AC
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC 152



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/316 (21%), Positives = 113/316 (35%), Gaps = 66/316 (20%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N   F  LI+G  ++      +  F  + R     N   +  + K + S+    L   L
Sbjct: 4   RNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSL 63

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I K G E +AFV   L D Y   G    A + FD                       
Sbjct: 64  HACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDA---------------------- 101

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                        +  K++ SW                               T M+  +
Sbjct: 102 -------------IACKDMVSW-------------------------------TGMVACY 117

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           ++N   + +L +F +M   G   N FT    L AC  + A   G  VH  +    + +  
Sbjct: 118 AENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDL 177

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +G  L+D+Y K G+      VF E  + D++ W+ MI   A   +  +A++ F +M  +
Sbjct: 178 YVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237

Query: 392 GTEPDGTVFLAILTAC 407
              P+   F ++L +C
Sbjct: 238 FVLPNQFTFASVLQSC 253


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  377 bits (969), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/636 (34%), Positives = 338/636 (53%), Gaps = 53/636 (8%)

Query: 45  KQLRQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           K L ++H++I+++ +L     +  +L+ + S       A  IFD    KN+  FNV+IR 
Sbjct: 52  KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
              N+ +   +S F  ML  +  P+  T+P V K+ + L  L +G  +H  IVK G++ +
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
            F+   L  MY + G  R A KV D+ P ++    V+ WN ++ G ++ G    A+E+  
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRD----VVSWNSMVAGYAQSGQFDDALEICK 227

Query: 224 MMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
            M   N+       + +S +  +    +++    +FE+M +K ++SW  MI  +  N   
Sbjct: 228 EMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMP 287

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +A+++F QM + G++ +  T+ S L AC  + AL  G R+H YI   +      +  AL
Sbjct: 288 NEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENAL 347

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           +DMYAKCG +E A  VF + + +D+++WT+M+      G+   A+  F KM+ SG  PD 
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457
             F+++L+AC ++G +    ++F  M   Y I P ++H   +V+L  R G+  + Y    
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAY---- 463

Query: 458 NSFTK---------------------------------LLQLKPKHPSSYVLLSNIYAAE 484
            SF K                                 L QL PK    YVLLSNIYA  
Sbjct: 464 -SFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKA 522

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
           G WKDV  VR  M++  IKK PG S +E+NG VH F AG   H  AK I+ +L+ ++   
Sbjct: 523 GMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKM 582

Query: 543 REQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           +E GY+P TE  LH+++ E+KE  L  HSEKLA+ F ++ T  GT I+I K L +CGDCH
Sbjct: 583 KELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCH 642

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             +K  SKI  R I++RD  RFH+F +G CSC DYW
Sbjct: 643 IAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 219/636 (34%), Positives = 338/636 (53%), Gaps = 53/636 (8%)

Query: 45  KQLRQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           K L ++H++I+++ +L     +  +L+ + S       A  IFD    KN+  FNV+IR 
Sbjct: 52  KTLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRS 111

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
              N+ +   +S F  ML  +  P+  T+P V K+ + L  L +G  +H  IVK G++ +
Sbjct: 112 YVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
            F+   L  MY + G  R A KV D+ P ++    V+ WN ++ G ++ G    A+E+  
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRD----VVSWNSMVAGYAQSGQFDDALEICK 227

Query: 224 MMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
            M   N+       + +S +  +    +++    +FE+M +K ++SW  MI  +  N   
Sbjct: 228 EMDSLNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMP 287

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +A+++F QM + G++ +  T+ S L AC  + AL  G R+H YI   +      +  AL
Sbjct: 288 NEAVSLFLQMEECGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENAL 347

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           +DMYAKCG +E A  VF + + +D+++WT+M+      G+   A+  F KM+ SG  PD 
Sbjct: 348 LDMYAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDS 407

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457
             F+++L+AC ++G +    ++F  M   Y I P ++H   +V+L  R G+  + Y    
Sbjct: 408 IAFVSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAY---- 463

Query: 458 NSFTK---------------------------------LLQLKPKHPSSYVLLSNIYAAE 484
            SF K                                 L QL PK    YVLLSNIYA  
Sbjct: 464 -SFIKQMPMEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKA 522

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
           G WKDV  VR  M++  IKK PG S +E+NG VH F AG   H  AK I+ +L+ ++   
Sbjct: 523 GMWKDVMNVRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKM 582

Query: 543 REQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           +E GY+P TE  LH+++ E+KE  L  HSEKLA+ F ++ T  GT I+I K L +CGDCH
Sbjct: 583 KELGYIPQTESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCH 642

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             +K  SKI  R I++RD  RFH+F +G CSC DYW
Sbjct: 643 IAIKLISKIVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 226/689 (32%), Positives = 356/689 (51%), Gaps = 76/689 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I+   +P +N T   +I       + +  R IH  +    L     +   L+      + 
Sbjct: 22  IRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 80

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A  +FD    ++L  + V+I G AE       +  F  M    V P+++    V  +
Sbjct: 81  IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 140

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L  +   R +   I +   + D  +   + DMY + G    A ++FD   EKN    
Sbjct: 141 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN---- 196

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKK-NVASWV----------------- 234
           V+ W+ +I      G  RKA++LF      GM+P K  +AS +                 
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH 256

Query: 235 ---------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                          +L+D + +  +++ A  LF++MPE+ +V+WT MI G+++ G A +
Sbjct: 257 IVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANE 316

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           +L +F +M + GV  +   +V+ + ACAK+GA+     + +YI    F L   +GTA++D
Sbjct: 317 SLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMID 376

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           M+AKCG +E+A  +F   +EK++++W+AMI     HG+  +A+  F  M+ SG  P+   
Sbjct: 377 MHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKIT 436

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN---- 455
            +++L AC ++G V+  L FF  M  DY +   VKH+T VV+LL R G+  +  +     
Sbjct: 437 LVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESM 496

Query: 456 ------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                                   ++ + T LL+L+P++P  Y+LLSNIYA  GRW+DVA
Sbjct: 497 TVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVA 556

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
           + R LM +R +KK PGW++IEV+   H+F  G   H  +KEI+  L+ +       GY+P
Sbjct: 557 KTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVP 616

Query: 550 GTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T +VLH++ EE K   L  HSEKLA+AFGLI T   T I+I+K L +CGDCH+  K  S
Sbjct: 617 DTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVS 676

Query: 609 KISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            I+ R I++RD  RFH+FK+G CSC DYW
Sbjct: 677 AITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 212/442 (47%), Gaps = 51/442 (11%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           ++ G A+   + +C   F  ++R   RP+  T PFV ++   L  L +GR +H ++ K G
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFG 60

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           ++ D FV   L DMYV+  +   A  +FD+  E++    ++ W V+I G ++ G   +++
Sbjct: 61  LDLDHFVCAALVDMYVKCREIEDARFLFDKMQERD----LVTWTVMIGGYAECGKANESL 116

Query: 220 ELF------GMMPKK---------------------------------NVASWVSLIDGF 240
            LF      G++P K                                 +V    ++ID +
Sbjct: 117 VLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMY 176

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + G ++ A E+F++M EK V+SW+AMI  +  +G+  KAL +F  ML +G+  +  T+ 
Sbjct: 177 AKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLA 236

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L AC+ +  L+ G  +H+ +      L   +  ALVDMY KC  IE A  +F +  E+
Sbjct: 237 SLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPER 296

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           DL+TWT MI G A  G   +++  F KM   G  PD    + ++ AC   G +  A    
Sbjct: 297 DLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTID 356

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480
           D ++   F +  V   T ++++ ++ G      ++++  F +   ++ K+  S+  +   
Sbjct: 357 DYIQRKKF-QLDVILGTAMIDMHAKCG----CVESAREIFDR---MEEKNVISWSAMIAA 408

Query: 481 YAAEGRWKDVARVRTLMQRRSI 502
           Y   G+ +    +  +M R  I
Sbjct: 409 YGYHGQGRKALDLFPMMLRSGI 430


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 250/734 (34%), Positives = 368/734 (50%), Gaps = 117/734 (15%)

Query: 15  PTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHN-LFASSRITTQL 69
           P  +   S  P   + E H  ++L+        L+QIH+ II   LHN LFA S++    
Sbjct: 8   PFVHFLPSSDPPYKLLENHPHLNLLAKCPDIPSLKQIHSLIIKSGLHNTLFAQSKLIEFC 67

Query: 70  ISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
             S S  + + YALS+F   H  P N+ I+N LIR  +      S +  F  ML   + P
Sbjct: 68  ALSPS--RDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYP 125

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N  T+P + KS A        + LH   +K  +     V   L  MY Q+G+ R A  VF
Sbjct: 126 NSHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVF 185

Query: 188 DETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKAVE 220
           D++  ++                            ++ V+ WN +I G  + G   +A+ 
Sbjct: 186 DKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALA 245

Query: 221 LFGMMPKKNVA--------------------------SWV-------------SLIDGFM 241
            F  M + +V+                          SWV             +L+D + 
Sbjct: 246 CFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYS 305

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           + G++  A +LF+ M +K V+ W  MI G+      E+AL +F  ML   V  ND T ++
Sbjct: 306 KCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLA 365

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKG-------AIGTALVDMYAKCGNIEAASLVF 354
            L ACA +GAL+ G  VH YI   D  LKG       ++ T+++ MYAKCG +E A  VF
Sbjct: 366 VLPACASLGALDLGKWVHAYI---DKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVF 422

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                + L +W AMI GLA++G  E+A+  F++M+  G +PD   F+ +L+AC  +G V+
Sbjct: 423 RSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVE 482

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-------------------- 454
           L   +F SM  DY I P ++H+  +++LL+R G+  +                       
Sbjct: 483 LGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNA 542

Query: 455 ---NSQNSF-----TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
              + Q  F      +L +L+P++  +YVLLSNIYA  GRW DVA++RT +  + +KK P
Sbjct: 543 CRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVP 602

Query: 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G + IE++G VH F  G   H  ++ I   L+++     E G++P T  VL+++ EE KE
Sbjct: 603 GCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKE 662

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
            AL  HSEKLA+AFGLI T PG+TI+IVK L +C +CHS  K  SKI  REI+ RD  RF
Sbjct: 663 GALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRF 722

Query: 623 HYFKDGTCSCRDYW 636
           H+FKDG CSC D W
Sbjct: 723 HHFKDGFCSCNDRW 736


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 224/681 (32%), Positives = 354/681 (51%), Gaps = 75/681 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +  T   I+S   S  +    R++H +++   L  ++ +   LIS  +   S+  A  +F
Sbjct: 144 DKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVF 203

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    ++   +  L    AE+ + Q  +  +  ML+  VRP+R+TY  V  +  SL+ L 
Sbjct: 204 DAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALE 263

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  IV+S    D  V   L  MY++ G  + A +VF+  P ++    V+ WN +I
Sbjct: 264 KGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRD----VIAWNTMI 319

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS---------------------------------- 232
            G    G L +A  +F  M K+ VA                                   
Sbjct: 320 GGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLV 379

Query: 233 -----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                  +LI+ + + G +K A ++F++MP++ VVSWTA++ G++  G+  ++ + F +M
Sbjct: 380 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKM 439

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           L  GV AN  T +  L AC+   AL+ G  +H  +         A+  AL+ MY KCG++
Sbjct: 440 LQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSV 499

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E A  V      +D++TW  +I GLA +GR  +A+Q F+ M      P+ T F+ +++AC
Sbjct: 500 EDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSAC 559

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------------- 452
                V+     F SMR DY I P+ KH+  +V++L+R G   +                
Sbjct: 560 RVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAM 619

Query: 453 -------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                         +  + +  + L+L+P++  +YV LS IYAA G W+DVA++R LM+ 
Sbjct: 620 WGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKE 679

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           R +KK+PG S+IEV G VH F AG   H   +EI+S+LE +    +  GY+P T +V+H+
Sbjct: 680 RGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHD 739

Query: 558 IKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           + +E KE A+  HSEKLA+A+GLI T P T I++ K L +C DCH+  K+ SKI+ REI+
Sbjct: 740 LDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREII 799

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
            RD  RFH+FK+G CSC DYW
Sbjct: 800 ARDAHRFHHFKNGECSCGDYW 820



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 109/436 (25%), Positives = 206/436 (47%), Gaps = 46/436 (10%)

Query: 14  APTTNIKSSHKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLI 70
           AP   ++  H+  + +     + L+ S    K L   +Q+H  I+   +  +  I   L+
Sbjct: 27  APADVLQYLHQKGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLL 86

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
                  S++ A  +FD F+ K++  +NV+I G A     Q   + F  M +  + P++ 
Sbjct: 87  KLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKF 146

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+  +  + +S + L+ GR +H  ++++G+  +A V   L  MY + G  R A +VFD  
Sbjct: 147 TFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAM 206

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK---------------- 228
             +++    + W  L    ++ GY +++++ +      G+ P +                
Sbjct: 207 ASRDE----VSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAAL 262

Query: 229 -----------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                            +V    +L   +++ G +K A E+FE +P + V++W  MI G 
Sbjct: 263 EKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGL 322

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
             +G+ E+A  MF +ML   V  +  T ++ LSACA+ G L  G  +H     +      
Sbjct: 323 VDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDV 382

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
             G AL++MY+K G+++ A  VF    ++D+++WTA++ G A  G+  ++   FKKM+  
Sbjct: 383 RFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQ 442

Query: 392 GTEPDGTVFLAILTAC 407
           G E +   ++ +L AC
Sbjct: 443 GVEANKITYMCVLKAC 458



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 166/358 (46%), Gaps = 46/358 (12%)

Query: 131 TYPFVS--KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
           +Y +V   +S      L++G+ +H  I++ G++ + ++   L  +YV  G    A ++FD
Sbjct: 44  SYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFD 103

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
               K  ++SV+ WNV+I+G +  G  ++A  LF      G+ P K              
Sbjct: 104 ----KFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPA 159

Query: 229 -------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                              N     +LI  + + G ++ A  +F+ M  +  VSWT +  
Sbjct: 160 ALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTG 219

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            ++++G A+++L  +  ML  GVR +  T ++ LSAC  + ALE G ++H  I  ++   
Sbjct: 220 AYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEHHS 279

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              + TAL  MY KCG ++ A  VF     +D++ W  MI GL   G+ E+A   F +M+
Sbjct: 280 DVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRML 339

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
                PD   +LAIL+AC   G +            D  +   V+    ++N+ S+ G
Sbjct: 340 KECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVS-DVRFGNALINMYSKAG 396



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/417 (23%), Positives = 180/417 (43%), Gaps = 48/417 (11%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +PS  IT  +++S   S  + ++ +QIHAQI+     +  R++T L        ++  A 
Sbjct: 243 RPSR-ITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAR 301

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F+    +++  +N +I GL ++   +     F  ML+  V P+R+TY  +  + A   
Sbjct: 302 EVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPG 361

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L+ G+ +H   VK G+  D      L +MY + G  + A +VFD  P+++    V+ W 
Sbjct: 362 GLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRD----VVSWT 417

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVAS-------------------W----------- 233
            L+ G +  G + ++   F  M ++ V +                   W           
Sbjct: 418 ALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKA 477

Query: 234 ---------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                     +L+  + + G ++ A  + E M  + VV+W  +I G +QNG   +AL  F
Sbjct: 478 GIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKF 537

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA 342
             M    +R N  T V+ +SAC     +E G R    +   D+G+         +VD+ A
Sbjct: 538 EVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASMR-KDYGIVPTEKHYACMVDILA 596

Query: 343 KCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           + G++ EA  ++     +     W A++     HG  E   Q  ++ +    +  GT
Sbjct: 597 RAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGT 653



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/240 (22%), Positives = 103/240 (42%), Gaps = 7/240 (2%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N IT   ++    +  + K  ++IHA+++   +FA   +   L+S      S++ A+ +
Sbjct: 446 ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV 505

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
            +  + +++  +N LI GLA+N      +  F  M    +RPN  T+  V  +    +L+
Sbjct: 506 SEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLV 565

Query: 146 SLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             GR     + K  G+         + D+  + G    A  V    P K    S  +W  
Sbjct: 566 EEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFK---PSAAMWGA 622

Query: 205 LINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           L+  C   G +    +A E    +  +N  ++VSL   +   G  +   +L + M E+GV
Sbjct: 623 LLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGV 682


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  377 bits (967), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 329/610 (53%), Gaps = 74/610 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N  +R LA   HFQ  ++ +  ML     PN  T+PF  KS ASLSL   G  LH  ++
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K+G E + FV+  L  MY +      A KVFDE    +     + +N LI G S      
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDEN--HHSRNLAVCYNALIAGYSLNSRFS 141

Query: 217 KAVELFGMMPKK----NVASWVSLI------------------------DG--------- 239
            AV LF  M K+    N  + + LI                        DG         
Sbjct: 142 DAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLL 201

Query: 240 --FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
             ++R G +  A +LF+ MPEKG+++W AMI+G++QNG A   L ++ +M   G+  +  
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+V  LS+CA +GA  AG  V   I  + FG    +  AL++MYA+CGN+  A  +F   
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGM 321

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            EK++++WTA+I G  +HG+ E A+Q F +M+ S   PDG  F+++L+AC ++G  +  L
Sbjct: 322 TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGL 381

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------------- 452
            +F +M  DY ++P  +H++ VV+LL R G+  +                          
Sbjct: 382 YYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKI 441

Query: 453 YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
           ++N   ++ +F K+++ +P +   YVLLSNI++  G  + + RVR +M+ R +KK+PG S
Sbjct: 442 HRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCS 501

Query: 510 YIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALG 567
           Y+E  G +H F AG   H  A+EI+  L+ +    + +G     +    N  EE    +G
Sbjct: 502 YVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQESRN--EELITGMG 559

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLA+AFGLI T PGT I ++K L +CGDCH  +K  S+I  R++V+RD TRFH+FK
Sbjct: 560 VHSEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFK 619

Query: 627 DGTCSCRDYW 636
           +G CSC+DYW
Sbjct: 620 NGVCSCKDYW 629



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 170/385 (44%), Gaps = 49/385 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD-HFTPKNLHI-FNVLIRGLAE 106
           Q+H  +I         + T LIS      +I  A  +FD +   +NL + +N LI G + 
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           NS F   +  F  M +  V  N +T   +    A    L  G  LH   V+ G++ D  V
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSV 196

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY------LRKAVE 220
              L  MYV+ G    A K+FD  PEK     ++ WN +I+G ++ G       L + +E
Sbjct: 197 GNCLLTMYVRCGSVDFARKLFDGMPEK----GLITWNAMISGYAQNGLAGHVLDLYRKME 252

Query: 221 LFGMMPKKNVASWV---------------------------------SLIDGFMRKGDLK 247
             G++P       V                                 +LI+ + R G+L 
Sbjct: 253 FTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLV 312

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           KA  +F+ M EK V+SWTA+I G+  +G+ E A+ +F +M+ +    +    VS LSAC+
Sbjct: 313 KARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACS 372

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGE-TKEKDLLT 364
             G  E G+     +   D+GL+      + +VD+  + G +E A  + G  + E D   
Sbjct: 373 HAGLTEKGLYYFTAME-RDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAV 431

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMM 389
           W A++    IH   E A   F+K++
Sbjct: 432 WGALLGACKIHRNVELAELAFEKVI 456



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 71/147 (48%), Gaps = 2/147 (1%)

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW A +   ++    ++AL ++ QML +G   N FT   A  +CA +    AG ++H ++
Sbjct: 23  SWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHV 82

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQ 380
                  +  + T+L+ MY KC  I +A  VF E      L   + A+I G +++ R+  
Sbjct: 83  IKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSD 142

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A+  F++M   G   +    L ++  C
Sbjct: 143 AVLLFRQMRKEGVSVNAVTMLGLIPVC 169



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 132/329 (40%), Gaps = 31/329 (9%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +HA  +   L     +   L++      S+D+A  +FD    K L  +N +I G A+N  
Sbjct: 181 LHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGL 240

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
               +  +  M    + P+ +T   V  S A L   + GR +   I  SG  ++ F++  
Sbjct: 241 AGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNA 300

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L +MY + G    A  +FD   EKN    V+ W  +I G    G    AV+LF  M   +
Sbjct: 301 LINMYARCGNLVKARAIFDGMTEKN----VISWTAIIAGYGMHGQGELAVQLFDEMISSD 356

Query: 230 V----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                A++VS++      G           + EKG+  +TAM   +      E    +  
Sbjct: 357 ELPDGAAFVSVLSACSHAG-----------LTEKGLYYFTAMERDYGLQPGPEHYSCVVD 405

Query: 286 QMLDAGVRANDFTVVSALSA---CAKVGALEAGVRVHNYISCNDFGLKGAIG-------- 334
            +  AG       ++ ++S     A  GAL    ++H  +   +   +  I         
Sbjct: 406 LLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTNIGY 465

Query: 335 -TALVDMYAKCGNIEAASLVFGETKEKDL 362
              L +++++ GN+E    V    +E+ L
Sbjct: 466 YVLLSNIFSEAGNMEGILRVRVMMRERKL 494


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 240/710 (33%), Positives = 371/710 (52%), Gaps = 108/710 (15%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFTP 91
           + L+ S  S KQ  QIHAQ I++ L       ++LIS  SL  S   +D++  +F     
Sbjct: 13  LCLLESCKSFKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDC 72

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRG 150
            NL ++N +IRG + + + +  I  ++ M+   + P N  T+PF+  S A LS L  G  
Sbjct: 73  PNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE 132

Query: 151 LHCLIVKSGVE------------YDAFVRVHLA----------DM---------YVQLGK 179
           +H  I+K G E            Y  F  ++LA          D+         Y ++ +
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192

Query: 180 TRGAFKVFDET------PE-------------------------------KNKSESVLLW 202
              A  +F E       P+                               ++   ++LL 
Sbjct: 193 PESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLK 252

Query: 203 NVLINGCSKIGYLRKAVELFGMM-PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           + +++  +K G +  A  +F  M   K+ A+W S++ G+ R G++  A +LF  M E+ V
Sbjct: 253 SAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV 312

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV-HN 320
           +SWTAMI+G+SQ G+  +AL +F +M   G++ ++ T+V+ LSACA++GA + G R+ H 
Sbjct: 313 ISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQ 372

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRY 378
           YI    F     +  A++DMYAKCG+I++A  +F    +  K    + +MI GLA HG  
Sbjct: 373 YIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLG 432

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           E AI  F++++ +G +PD   F+ +L AC +SG ++     F+SM   Y I+P ++H+  
Sbjct: 433 ETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGC 492

Query: 439 VVNLLSRVGQDSQGYQNSQ------NSFT----------------------KLLQLKPKH 470
           +V+LL R G   + Y   Q      NS                        KLL+++ +H
Sbjct: 493 MVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQH 552

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
            + YVLLSNI A   +W++  +VR +M+   I+K PGWSYIE+ G +HRF A    H   
Sbjct: 553 GARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQG 612

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTT 587
           KEI   L+D+    +  GY+P T  V+ +I +EEKE  +  HSEKLALAFGL+  +P  T
Sbjct: 613 KEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDT 672

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I+IVK L IC DCH   K  S+I  REI +RDT RFH+F++G+CSC D+W
Sbjct: 673 IRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 233/671 (34%), Positives = 353/671 (52%), Gaps = 74/671 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S I S+ + + ++++H         +  R+   LI   +   SID A  +FD    +++ 
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVI 301

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +N +I GLA+N       + F+ M +    P+  TY  +  +  S       + +H   
Sbjct: 302 SWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHA 361

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           V+ G+  D  V      MY++ G    A  +FD+   +N    V  WN +I G ++    
Sbjct: 362 VEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRN----VTTWNAMIGGVAQQKCG 417

Query: 216 RKAVELFGMMPKK----------NVAS---------WV-------------------SLI 237
           R+A+ LF  M ++          N+ S         WV                   +L+
Sbjct: 418 REALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNALV 477

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
             + + G+   A ++F+ M E+ V +WT MI+G +Q+G   +A ++F QML  G+  +  
Sbjct: 478 HMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDAT 537

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T VS LSACA  GALE    VH++           +G ALV MYAKCG+++ A  VF + 
Sbjct: 538 TYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM 597

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            E+D+ +WT MI GLA HGR   A+  F KM   G +P+G  F+A+L+AC ++G V    
Sbjct: 598 LERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGR 657

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------------- 452
             F S+  DY IEP+++H+T +V+LL R GQ  +                          
Sbjct: 658 RQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVT 717

Query: 453 YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
           Y N   ++ +  + L+LKPK  S+YVLLSNIYAA G W+    VR++MQRR I+K+PG S
Sbjct: 718 YGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRS 777

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEAL 566
           +IEV+  +H F  G   H  +KEI++KL+D++   + +GY+P T  VL N  +E KE+AL
Sbjct: 778 WIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQAL 837

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+ +GL+ T     I++ K L +C DCH+  K+ SK++ REIV RD  RFH+F
Sbjct: 838 CSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHF 897

Query: 626 KDGTCSCRDYW 636
           KDG CSC DYW
Sbjct: 898 KDGVCSCGDYW 908



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/347 (30%), Positives = 167/347 (48%), Gaps = 45/347 (12%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +I G AE  + +  +  +  M R   +PN +TY  + K+  S   L  G+ +H  I++SG
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
            + D  V   L +MYV+ G    A  +FD+  E+N    V+ W V+I G +  G  ++A 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERN----VISWTVMIGGLAHYGRGQEAF 116

Query: 220 ELFGMMPKK----NVASWVSLIDG-----------------------------------F 240
             F  M ++    N  ++VS+++                                    +
Sbjct: 117 HRFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMY 176

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + G +  A  +F+ M E+ + SWT MI G +Q+G  ++A ++F QM   G   N  T +
Sbjct: 177 AKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYL 236

Query: 301 SALSACA--KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           S L+A A    GALE    VH +     F     +G AL+ MYAKCG+I+ A LVF    
Sbjct: 237 SILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMC 296

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           ++D+++W AMI GLA +G   +A   F KM   G  PD T +L++L 
Sbjct: 297 DRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/436 (27%), Positives = 193/436 (44%), Gaps = 45/436 (10%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A+   + ++      N IT   I+    S  S K  ++IHA II     +  R+ T L++
Sbjct: 14  AMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVN 73

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
                 SID A  IFD    +N+  + V+I GLA     Q     F+ M R    PN  T
Sbjct: 74  MYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYT 133

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  +  + AS   L   + +H   V +G+  D  V   L  MY + G    A  VFD   
Sbjct: 134 YVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMV 193

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLID--------- 238
           E++    +  W V+I G ++ G  ++A  LF  M +     N+ +++S+++         
Sbjct: 194 ERD----IFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGA 249

Query: 239 --------------GFM--------------RKGDLKKAGELFEQMPEKGVVSWTAMING 270
                         GF+              + G +  A  +F+ M ++ V+SW AMI G
Sbjct: 250 LEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGG 309

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            +QNG   +A  +F +M   G   +  T +S L+     GA E    VH +         
Sbjct: 310 LAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSD 369

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +G+A V MY +CG+I+ A L+F +   +++ TW AMI G+A      +A+  F +M  
Sbjct: 370 LRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRR 429

Query: 391 SGTEPDGTVFLAILTA 406
            G  PD T F+ IL+A
Sbjct: 430 EGFFPDATTFVNILSA 445



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 4/237 (1%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y + G    A KV+ +   +    + + +  ++  C     L+   ++   + +    S 
Sbjct: 5   YAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSD 64

Query: 234 V----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           V    +L++ +++ G +  A  +F++M E+ V+SWT MI G +  G  ++A   F QM  
Sbjct: 65  VRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQR 124

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G   N +T VS L+A A  GALE    VH++       L   +G ALV MYAK G+I+ 
Sbjct: 125 EGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDD 184

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           A +VF    E+D+ +WT MI GLA HGR ++A   F +M   G  P+ T +L+IL A
Sbjct: 185 ARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNA 241



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 175/396 (44%), Gaps = 53/396 (13%)

Query: 32  THIISLIHSSNST---KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           T  +SL+++  ST   + ++++H   +   L +  R+ +  +       SID A  IFD 
Sbjct: 336 TTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDK 395

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              +N+  +N +I G+A+    +  +S F+ M R    P+  T+  +  +      L   
Sbjct: 396 LAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWV 455

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + +H   + +G+  D  V   L  MY + G T  A +VFD+  E+N    V  W V+I+G
Sbjct: 456 KEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERN----VTTWTVMISG 510

Query: 209 CSKIGYLRKAVELFGMMPKKNVA-------------------SWV--------------- 234
            ++ G   +A  LF  M ++ +                     WV               
Sbjct: 511 LAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSD 570

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +L+  + + G +  A  +F+ M E+ V SWT MI G +Q+G    AL +F +M  
Sbjct: 571 LRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKL 630

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-CNDFGLKGAIG--TALVDMYAKCGN 346
            G + N ++ V+ LSAC+  G ++ G R   ++S   D+G++  +   T +VD+  + G 
Sbjct: 631 EGFKPNGYSFVAVLSACSHAGLVDEGRR--QFLSLTQDYGIEPTMEHYTCMVDLLGRAGQ 688

Query: 347 IEAAS-LVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +E A   +     E     W A++     +G  E A
Sbjct: 689 LEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMA 724



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 118/231 (51%), Gaps = 37/231 (16%)

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G+++ G AE A+ ++ QM   G + N+ T +S L AC    +L+ G ++H +I  + 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F     + TALV+MY KCG+I+ A L+F +  E+++++WT MI GLA +GR ++A   F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVK-------------LALNF-------------- 419
           +M   G  P+   +++IL A   +G ++             LAL+               
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 420 -FDSMR--FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
             D  R  FD  +E  +   TV++  L++ G+        Q +F+  LQ++
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGR-------GQEAFSLFLQME 224



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 144/336 (42%), Gaps = 24/336 (7%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T  +I+S      + + ++++H+  I   L    R+   L+   +   +  YA  +FD  
Sbjct: 438 TFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDM 496

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             +N+  + V+I GLA++       S F+ MLR  + P+  TY  +  + AS   L   +
Sbjct: 497 VERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVK 556

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H   V +G+  D  V   L  MY + G    A +VFD+  E++    V  W V+I G 
Sbjct: 557 EVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERD----VYSWTVMIGGL 612

Query: 210 SKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKG 260
           ++ G    A++LF  M     K N  S+V+++      G + +    F  +      E  
Sbjct: 613 AQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPT 672

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +  +T M++   + G+ E+A      M    +   D    + L AC   G LE    +  
Sbjct: 673 MEHYTCMVDLLGRAGQLEEAKHFILNM---PIEPGDAPWGALLGACVTYGNLE----MAE 725

Query: 321 YISCNDFGLKGAIGTALV---DMYAKCGNIEAASLV 353
           + +     LK    +  V   ++YA  GN E   LV
Sbjct: 726 FAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLV 761


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 228/676 (33%), Positives = 354/676 (52%), Gaps = 79/676 (11%)

Query: 35  ISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL+ + N  + L Q   +HA++    L     + T L+S  +   S++ AL +F+    
Sbjct: 310 VSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKG 369

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N+  +  +I G A++   +     F  M+   + PNR+T+  +  + +  S L  GR +
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQI 429

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I+K+G   D  VR  L  MY + G    A  VF+   ++N    V+ WN +I    +
Sbjct: 430 HDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQN----VVAWNAMITAYVQ 485

Query: 212 IGYLRKAVELFGMMPKKNV----------------------ASWV--------------- 234
                 AV  F  + K+ +                        WV               
Sbjct: 486 HEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHI 545

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +L+  F+  GDL  A  LF  MPE+ +VSW  +I GF Q+GE + A   F  M ++GV
Sbjct: 546 RNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGV 605

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + +  T    L+ACA   AL  G R+H  I+         +GT L+ MY KCG+I+ A L
Sbjct: 606 KPDQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHL 665

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF    +K++ +WT+MI G A HGR ++A++ F +M   G +PD   F+  L+AC ++G 
Sbjct: 666 VFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGL 725

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---------------QDSQGY---- 453
           +K  L+ F+SM+ D+ IEP ++H+  +V+L  R G                DS+ +    
Sbjct: 726 IKEGLHHFESMK-DFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALL 784

Query: 454 ---------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    + ++    K L+L P     YV+LSNIYAA G WK+V ++R +M  R + K
Sbjct: 785 GACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVK 844

Query: 505 DPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-E 561
            PG S+IEV+G VH F  +   H   +EIH++L  +    ++ GY+P T +VLH++++ E
Sbjct: 845 KPGQSWIEVDGRVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSE 904

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           KE AL  HSE+LA+A+GL++T P T I I K L +CGDCH+  K  SKI++R+I+ RD+ 
Sbjct: 905 KEHALCHHSERLAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSN 964

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FKDG CSC D+W
Sbjct: 965 RFHHFKDGVCSCGDFW 980



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 211/439 (48%), Gaps = 43/439 (9%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           +L+ A+    ++ S H   +  T + ++ L     +     +IH  I    +     +  
Sbjct: 84  QLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWN 143

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LIS  +   + + A  IFD    K+++ +N+L+ G  ++  ++        M++  V+P
Sbjct: 144 MLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKP 203

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           ++ T+ ++  + A    +  G  L  LI+ +G + D FV   L +M+++ G    A KVF
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG---- 239
           +  P ++    ++ W  +I G ++    ++A  LF +M ++ V     ++VSL+      
Sbjct: 264 NNLPRRD----LITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHP 319

Query: 240 -------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                                          + + G ++ A E+F  +  + VVSWTAMI
Sbjct: 320 EALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMI 379

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            GF+Q+G  E+A   F +M+++G+  N  T +S L AC++  AL+ G ++H+ I    + 
Sbjct: 380 AGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYI 439

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               + TAL+ MYAKCG++  A  VF    +++++ W AMI     H +Y+ A+  F+ +
Sbjct: 440 TDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQAL 499

Query: 389 MYSGTEPDGTVFLAILTAC 407
           +  G +PD + F +IL  C
Sbjct: 500 LKEGIKPDSSTFTSILNVC 518



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 117/483 (24%), Positives = 213/483 (44%), Gaps = 53/483 (10%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T LI+       +D AL +F++   ++L  +  +I GLA +  F+   + F  M    
Sbjct: 242 VGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEG 301

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           V+P+++ +  + K+      L  G+ +H  + + G++ + +V   L  MY + G    A 
Sbjct: 302 VQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDAL 361

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------------- 230
           +VF+    +N    V+ W  +I G ++ G + +A   F  M +  +              
Sbjct: 362 EVFNLVKGRN----VVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGAC 417

Query: 231 ------------------ASWVS-------LIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                             A +++       L+  + + G L  A  +FE++ ++ VV+W 
Sbjct: 418 SRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWN 477

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI  + Q+ + + A+A F  +L  G++ +  T  S L+ C    ALE G  V + I   
Sbjct: 478 AMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA 537

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     I  ALV M+  CG++ +A  +F +  E+DL++W  +I G   HG  + A  YF
Sbjct: 538 GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF 597

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           K M  SG +PD   F  +L AC  S +         ++  +  ++  V   T ++++ ++
Sbjct: 598 KMMQESGVKPDQITFTGLLNAC-ASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTK 656

Query: 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            G     +    N       L  K+  S+  +   YA  GR K+   +   MQ+  +K  
Sbjct: 657 CGSIDDAHLVFHN-------LPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVK-- 707

Query: 506 PGW 508
           P W
Sbjct: 708 PDW 710



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/382 (28%), Positives = 183/382 (47%), Gaps = 56/382 (14%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           ++ +R TY  + +       L  G  +H  I  S ++ D F+   L  MY + G T  A 
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 185 KVFDETPEKNKSESVLLWNVL-----------------------------------INGC 209
           ++FDE P+K+    V  WN+L                                   +N C
Sbjct: 160 QIFDEMPDKD----VYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNAC 215

Query: 210 SKIGYLRKAVELFGMMPKKNVASW-------VSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           +    + K  ELF ++     A W        +LI+  ++ G +  A ++F  +P + ++
Sbjct: 216 ADAKNVDKGGELFSLILN---AGWDTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLI 272

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +WT+MI G +++ + ++A  +F  M + GV+ +    VS L AC    ALE G RVH  +
Sbjct: 273 TWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARM 332

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
                  +  +GTAL+ MY KCG++E A  VF   K +++++WTAMI G A HGR E+A 
Sbjct: 333 KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAF 392

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVN 441
            +F KM+ SG EP+   F++IL AC     +K      D  ++  Y  +  V+  T +++
Sbjct: 393 LFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR--TALLS 450

Query: 442 LLSRVGQDSQGYQNSQNSFTKL 463
           + ++ G       +++N F ++
Sbjct: 451 MYAKCG----SLMDARNVFERI 468



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 15/250 (6%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           +S  KP + IT T +++   S  +  + R++HA I    L     + T LIS  +   SI
Sbjct: 602 ESGVKP-DQITFTGLLNACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSI 660

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           D A  +F +   KN++ +  +I G A++   +  +  F  M +  V+P+ +T+     + 
Sbjct: 661 DDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSAC 720

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVFDETPEKNK 195
           A   L+    GLH    +S  +++   R+     + D++ + G    A +  ++   K  
Sbjct: 721 AHAGLIK--EGLHHF--ESMKDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPD 776

Query: 196 SESVLLWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           S    LW  L+  C     +    K  +    +   +   +V L + +   G  K+  ++
Sbjct: 777 SR---LWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKM 833

Query: 253 FEQMPEKGVV 262
            + M ++GVV
Sbjct: 834 RKVMLDRGVV 843


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/633 (34%), Positives = 332/633 (52%), Gaps = 78/633 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LIS    ++ +  A   FD    +N+  +  ++RG  +        + F  M       N
Sbjct: 84  LISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQM----PEKN 139

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
            +++  +   +  +  +   RGL  ++ VK     D   R ++   Y Q G+   A ++F
Sbjct: 140 VVSWTVMLGGLIQVRRIDEARGLFDIMPVK-----DVVARTNMISGYCQEGRLAEARELF 194

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           DE P +N    V+ W  +I+G  + G +  A +LF +MP+KN  SW +++ G+ + G ++
Sbjct: 195 DEMPRRN----VISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIE 250

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ--------------------- 286
           +A ELF+ MP K VV+  AMI GF QNGE  KA  +F Q                     
Sbjct: 251 EASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGF 310

Query: 287 ----------MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
                     M   GV++N  +++S LS CA + +L+ G +VH  +  + F     + + 
Sbjct: 311 EVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASV 370

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ MY KCG++  A  +F     KD++ W ++I G A HG  E+A+Q F +M  SG   D
Sbjct: 371 LITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATD 430

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
           G  F+ +L+AC Y+G+VK  L  F+SM+  Y +EP  +H+  +V+LL R G  +      
Sbjct: 431 GVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLI 490

Query: 457 QN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
           Q                             +  KLLQL+PK+   Y+LLSNIYA++GRW 
Sbjct: 491 QKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWG 550

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIHSKLEDIMAGAREQ 545
           DVA +R  M+ + + K PG S+IEV   VH F  G    H     I   LE +    RE 
Sbjct: 551 DVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREA 610

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P + +VLH++ +EEK  +LG HSE+LA+AFGL++   G  I+++K L +CGDCHS +
Sbjct: 611 GYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAI 670

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  +KI+ REI+LRD  RFH+FKDG CSCRDYW
Sbjct: 671 KLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 161/336 (47%), Gaps = 34/336 (10%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
           I+ A  +FD    K +  +N ++ G  +N+  +     F  M  R +V  N L   +V  
Sbjct: 32  IESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSWNGLISGYVKN 91

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
            + S +     +    +  ++ V + A VR      YVQ G    A  +F + PEKN   
Sbjct: 92  RMVSEAR----KAFDTMPERNVVSWTAMVR-----GYVQEGLVSEAETLFWQMPEKN--- 139

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
            V+ W V++ G  ++  + +A  LF +MP K+V +  ++I G+ ++G L +A ELF++MP
Sbjct: 140 -VVSWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAEARELFDEMP 198

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA--- 314
            + V+SWT MI+G+ QNG+ + A  +F  M +     N+ +  + L    + G +E    
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPE----KNEVSWTAMLMGYTQGGRIEEASE 254

Query: 315 ---GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
               + V   ++CN          A++  + + G +  A  VF + +EKD  TW+AMI  
Sbjct: 255 LFDAMPVKAVVACN----------AMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKV 304

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
               G   +A+  F  M   G + +    +++L+ C
Sbjct: 305 YERKGFEVEALNLFALMQREGVQSNFPSLISVLSVC 340



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 161/332 (48%), Gaps = 28/332 (8%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y ++G+   A +VFDE P+K     ++ WN ++ G  +    R+A  LF  MP++N  SW
Sbjct: 26  YARIGQIESARRVFDEMPDKG----IVSWNSMVAGYFQNNRPREARYLFDKMPERNTVSW 81

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             LI G+++   + +A + F+ MPE+ VVSWTAM+ G+ Q G   +A  +F+QM +  V 
Sbjct: 82  NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV 141

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           +  +TV+  L    +V  ++    + + +   D   +    T ++  Y + G +  A  +
Sbjct: 142 S--WTVM--LGGLIQVRRIDEARGLFDIMPVKDVVAR----TNMISGYCQEGRLAEAREL 193

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E   +++++WT MI G   +G+ + A + F+ M     E +   + A+L      G++
Sbjct: 194 FDEMPRRNVISWTTMISGYVQNGQVDVARKLFEVM----PEKNEVSWTAMLMGYTQGGRI 249

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS 473
           + A   FD+M         VK       ++   GQ+ +  +  Q       Q++ K   +
Sbjct: 250 EEASELFDAM--------PVKAVVACNAMILGFGQNGEVAKARQ----VFDQIREKDDGT 297

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           +  +  +Y  +G   +   +  LMQR  ++ +
Sbjct: 298 WSAMIKVYERKGFEVEALNLFALMQREGVQSN 329



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 58/272 (21%), Positives = 108/272 (39%), Gaps = 30/272 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDY 81
           SN  +   ++S+  S  S    RQ+HA+++      ++F +S + T  +    L K    
Sbjct: 328 SNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVK---- 383

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IFD F+PK++ ++N +I G A++   +  +  F  M    +  + +T+  V  + + 
Sbjct: 384 ARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSACSY 443

Query: 142 LSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
              +  G  +   +  K  VE        + D+  + G    A  +  + P +  +   +
Sbjct: 444 TGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADA---I 500

Query: 201 LWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           +W  L+  C     +     A +    +  KN   ++ L + +  KG      EL   M 
Sbjct: 501 IWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRRNMR 560

Query: 258 EKGV-----VSWTAMINGFSQNGEAEKALAMF 284
            K V      SW           E EK + MF
Sbjct: 561 VKKVSKSPGCSWI----------EVEKRVHMF 582


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 237/681 (34%), Positives = 363/681 (53%), Gaps = 86/681 (12%)

Query: 1   MKGHVFNRLTTAIAPTTNIKSSHKPSN--NITETHIISLIHSSNSTKQLRQIHAQIIL-- 56
           MK    N+L++A+  T N K + KP+   +I ETH+    H+ ++ KQ  +I +Q+IL  
Sbjct: 1   MKLSKLNQLSSALKSTFNHKPTFKPTITLSILETHL----HNCHNLKQFNRILSQMILTG 56

Query: 57  --HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
              + FA+SR+     S+ S    +DY+L IFD     N  ++N ++R   +++  +  +
Sbjct: 57  FISDTFAASRLLK--FSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKAL 114

Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
             +  M++ +V P+  TYP V ++ A   L   G+ +H  ++K G +         +D+Y
Sbjct: 115 LLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFD---------SDVY 165

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
           VQ                          N LIN  +  G +R A +LF   P  +  SW 
Sbjct: 166 VQ--------------------------NTLINMYAVCGNMRDARKLFDESPVLDSVSWN 199

Query: 235 SLIDGFMRKGDLKKAGE---LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           S++ G+++KGD+ +  E   LF +M EK +VSW+A+I+G+ QNG  E+AL MF +M   G
Sbjct: 200 SILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANG 259

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF----GLKGAIGTALVDMYAKCGNI 347
           +R ++  VVS LSACA +  ++ G  +H  +          L+ A+     DMY KCG +
Sbjct: 260 MRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYMKCGCV 319

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E A  VF   +EK + +W A+I GLA++G  E+++  F +M  +G  P+   F+ +L AC
Sbjct: 320 ENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGAC 379

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------------- 452
            + G V      F SM   + IEP+VKH+  +V+LL R G  ++                
Sbjct: 380 RHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVAT 439

Query: 453 -------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                         +  +    KL++L+P H   +VLLSNI+A++G W+DV  VR +M++
Sbjct: 440 WGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQ 499

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + + K PG S IE NG VH F AG   H    ++   L ++    + +GY P T  V  +
Sbjct: 500 QGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLD 559

Query: 558 I-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           I +EEKE  L  HSEKLA+AFGL+  +P T I+I+K L IC DCH+  K  SK   REIV
Sbjct: 560 IDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIV 619

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
           +RD  RFHYFK+G CSC DYW
Sbjct: 620 VRDRHRFHYFKEGACSCMDYW 640


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/676 (32%), Positives = 359/676 (53%), Gaps = 79/676 (11%)

Query: 35  ISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL+ + N  + L Q   +HA++          + T ++S  +   S++ AL +FD    
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N+  +  +I G A++         F  M+   + PNR+T+  +  + +S S L  G+ +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
              I+++G   D  VR  L  MY + G  + A +VF++  ++N    V+ WN +I    +
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN----VVAWNAMITAYVQ 491

Query: 212 IGYLRKAVELFGMMPKKNV----------------------ASWV--------------- 234
                 A+  F  + K+ +                        WV               
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +L+  F+  GDL  A  LF  MP++ +VSW  +I GF Q+G+ + A   F  M ++G+
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + +  T    L+ACA   AL  G R+H  I+   F     +GT L+ MY KCG+IE A  
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF +  +K++ +WT+MI G A HGR ++A++ F +M   G +PD   F+  L+AC ++G 
Sbjct: 672 VFHKLPKKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---------------QDSQGY---- 453
           ++  L+ F SM+ ++ IEP ++H+  +V+L  R G                DS+ +    
Sbjct: 732 IEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALL 790

Query: 454 ---------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    + ++ +  K L+L P     +V+LSNIYAA G WK+VA++R +M  R + K
Sbjct: 791 GACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVK 850

Query: 505 DPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-E 561
            PG S+IEV+G VH F  +   H   +EIH++LE +    R+ GY+P T +VLH++++ E
Sbjct: 851 KPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNE 910

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           KE+AL  HSE+LA+ +GL++T P T I I K L +CGDCH+  K+ SKI++R+I+ RD+ 
Sbjct: 911 KEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSN 970

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FKDG CSC D+W
Sbjct: 971 RFHHFKDGVCSCGDFW 986



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 193/374 (51%), Gaps = 43/374 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IFD    K+++ +N+L+ G  ++  ++        M++ SV+P++ T+  +  + A 
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              +  GR L+ LI+K+G + D FV   L +M+++ G    A KVFD  P ++    ++ 
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD----LVT 279

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG------------------ 239
           W  +I G ++ G  ++A  LF  M ++ V     ++VSL+                    
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339

Query: 240 -----------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                            + + G ++ A E+F+ +  + VVSWTAMI GF+Q+G  ++A  
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            F +M+++G+  N  T +S L AC+   AL+ G ++ ++I    +G    + TAL+ MYA
Sbjct: 400 FFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA 459

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+++ A  VF +  +++++ W AMI     H +Y+ A+  F+ ++  G +P+ + F +
Sbjct: 460 KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTS 519

Query: 403 ILTACWYSGQVKLA 416
           IL  C  S  ++L 
Sbjct: 520 ILNVCKSSDSLELG 533



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 176/355 (49%), Gaps = 43/355 (12%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K+    N ++  L++   F   +     +    ++  R TY  + +       L  G  +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           +  I KSGV+ D F+   L +MY + G T  A ++FD+  EK+    V  WN+L+ G  +
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKD----VYSWNLLLGGYVQ 188

Query: 212 IGYLRKAVELFGMMPKKNV--------------------------------ASW------ 233
            G   +A +L   M + +V                                A W      
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 234 -VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +LI+  ++ GD+  A ++F+ +P + +V+WT+MI G +++G  ++A  +F +M + GV
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + +    VS L AC    ALE G +VH  +    +  +  +GTA++ MY KCG++E A  
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           VF   K +++++WTAMI G A HGR ++A  +F KM+ SG EP+   F++IL AC
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/512 (23%), Positives = 218/512 (42%), Gaps = 59/512 (11%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLH 95
           N+    R +     L+NL   +   T L    +L         I  A  +FD+   ++L 
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +  +I GLA +  F+   + F  M    V+P+++ +  + ++      L  G+ +H  +
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            + G + + +V   +  MY + G    A +VFD    +N    V+ W  +I G ++ G +
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN----VVSWTAMIAGFAQHGRI 394

Query: 216 RKAVELFGMMPKKNVAS---------------------------------------WVSL 236
            +A   F  M +  +                                           +L
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTAL 454

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +  + + G LK A  +FE++ ++ VV+W AMI  + Q+ + + ALA F  +L  G++ N 
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T  S L+ C    +LE G  VH  I          +  ALV M+  CG++ +A  +F +
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             ++DL++W  +I G   HG+ + A  YFK M  SG +PD   F  +L AC  S +    
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC-ASPEALTE 633

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
                ++  +   +  V   T ++++ ++ G     +Q     F KL +   K+  S+  
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ----VFHKLPK---KNVYSWTS 686

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
           +   YA  GR K+   +   MQ+  +K  P W
Sbjct: 687 MITGYAQHGRGKEALELFYQMQQEGVK--PDW 716



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 51/429 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I+S  +P N +T   I+    S ++ K+ +QI   II     +  R+ T L+S  +   S
Sbjct: 405 IESGIEP-NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  A  +F+  + +N+  +N +I    ++  + + ++ F  +L+  ++PN  T+  +   
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             S   L LG+ +H LI+K+G+E D  V   L  M+V  G    A  +F++ P+++    
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD---- 579

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM------PKK------------------------ 228
           ++ WN +I G  + G  + A + F MM      P K                        
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 229 ---------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                    +V     LI  + + G ++ A ++F ++P+K V SWT+MI G++Q+G  ++
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKE 699

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
           AL +F+QM   GV+ +  T V ALSACA  G +E G  +H++ S  +F ++  +     +
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCM 757

Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           VD++ + G + EA   +     E D   W A++    +H   E A +  +K +    +P+
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLE--LDPN 815

Query: 397 GTVFLAILT 405
                 IL+
Sbjct: 816 DNGVFVILS 824



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 127/281 (45%), Gaps = 25/281 (8%)

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A++N  S+ G+  +A+ +  ++  + ++    T  + L  C K   L  G R++N+I  
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +       +   L++MYAKCGN  +A  +F + +EKD+ +W  ++ G   HG YE+A + 
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSVKHHTVV 439
            ++M+    +PD   F+++L AC  +  V      ++ +       D F+       T +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV------GTAL 252

Query: 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           +N+  + G      +   N  T+ L        ++  +    A  GR+K    +   M+ 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDL-------VTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 500 RSIKKDPGW--SYIEVNGHVHRFEAGGHKLAKEIHSKLEDI 538
             ++ D     S +    H    E G     K++H++++++
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQG-----KKVHARMKEV 341


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 221/676 (32%), Positives = 359/676 (53%), Gaps = 79/676 (11%)

Query: 35  ISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL+ + N  + L Q   +HA++          + T ++S  +   S++ AL +FD    
Sbjct: 316 VSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKG 375

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N+  +  +I G A++         F  M+   + PNR+T+  +  + +S S L  G+ +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
              I+++G   D  VR  L  MY + G  + A +VF++  ++N    V+ WN +I    +
Sbjct: 436 QDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQN----VVAWNAMITAYVQ 491

Query: 212 IGYLRKAVELFGMMPKKNV----------------------ASWV--------------- 234
                 A+  F  + K+ +                        WV               
Sbjct: 492 HEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHV 551

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +L+  F+  GDL  A  LF  MP++ +VSW  +I GF Q+G+ + A   F  M ++G+
Sbjct: 552 SNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGI 611

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + +  T    L+ACA   AL  G R+H  I+   F     +GT L+ MY KCG+IE A  
Sbjct: 612 KPDKITFTGLLNACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQ 671

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF +  +K++ +WT+MI G A HGR ++A++ F +M   G +PD   F+  L+AC ++G 
Sbjct: 672 VFHKLPKKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGL 731

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---------------QDSQGY---- 453
           ++  L+ F SM+ ++ IEP ++H+  +V+L  R G                DS+ +    
Sbjct: 732 IEEGLHHFQSMK-EFNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALL 790

Query: 454 ---------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    + ++ +  K L+L P     +V+LSNIYAA G WK+VA++R +M  R + K
Sbjct: 791 GACQVHLNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVK 850

Query: 505 DPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-E 561
            PG S+IEV+G VH F  +   H   +EIH++LE +    R+ GY+P T +VLH++++ E
Sbjct: 851 KPGQSWIEVDGKVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNE 910

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           KE+AL  HSE+LA+ +GL++T P T I I K L +CGDCH+  K+ SKI++R+I+ RD+ 
Sbjct: 911 KEQALFYHSERLAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSN 970

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FKDG CSC D+W
Sbjct: 971 RFHHFKDGVCSCGDFW 986



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 193/374 (51%), Gaps = 43/374 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IFD    K+++ +N+L+ G  ++  ++        M++ SV+P++ T+  +  + A 
Sbjct: 164 AKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACAD 223

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              +  GR L+ LI+K+G + D FV   L +M+++ G    A KVFD  P ++    ++ 
Sbjct: 224 ARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRD----LVT 279

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG------------------ 239
           W  +I G ++ G  ++A  LF  M ++ V     ++VSL+                    
Sbjct: 280 WTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARMK 339

Query: 240 -----------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                            + + G ++ A E+F+ +  + VVSWTAMI GF+Q+G  ++A  
Sbjct: 340 EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFAQHGRIDEAFL 399

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            F +M+++G+  N  T +S L AC+   AL+ G ++ ++I    +G    + TAL+ MYA
Sbjct: 400 FFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYA 459

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+++ A  VF +  +++++ W AMI     H +Y+ A+  F+ ++  G +P+ + F +
Sbjct: 460 KCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTS 519

Query: 403 ILTACWYSGQVKLA 416
           IL  C  S  ++L 
Sbjct: 520 ILNVCKSSDSLELG 533



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/355 (29%), Positives = 177/355 (49%), Gaps = 43/355 (12%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K+    N ++  L++   F   +     +    ++  R TY  + +       L  G  +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           +  I KSGV+ D F+R  L +MY + G T  A ++FD+  EK+    V  WN+L+ G  +
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKD----VYSWNLLLGGYVQ 188

Query: 212 IGYLRKAVELFGMMPKKNV--------------------------------ASW------ 233
            G   +A +L   M + +V                                A W      
Sbjct: 189 HGLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV 248

Query: 234 -VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +LI+  ++ GD+  A ++F+ +P + +V+WT+MI G +++G  ++A  +F +M + GV
Sbjct: 249 GTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGV 308

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + +    VS L AC    ALE G +VH  +    +  +  +GTA++ MY KCG++E A  
Sbjct: 309 QPDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALE 368

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           VF   K +++++WTAMI G A HGR ++A  +F KM+ SG EP+   F++IL AC
Sbjct: 369 VFDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGAC 423



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/512 (23%), Positives = 219/512 (42%), Gaps = 59/512 (11%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLH 95
           N+    R +     L+NL   +   T L    +L         I  A  +FD+   ++L 
Sbjct: 219 NACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLV 278

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +  +I GLA +  F+   + F  M    V+P+++ +  + ++      L  G+ +H  +
Sbjct: 279 TWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHARM 338

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
            + G + + +V   +  MY + G    A +VFD    +N    V+ W  +I G ++ G +
Sbjct: 339 KEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRN----VVSWTAMIAGFAQHGRI 394

Query: 216 RKAVELFGMMPKKNVAS---------------------------------------WVSL 236
            +A   F  M +  +                                           +L
Sbjct: 395 DEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTAL 454

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +  + + G LK A  +FE++ ++ VV+W AMI  + Q+ + + ALA F  +L  G++ N 
Sbjct: 455 LSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNS 514

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T  S L+ C    +LE G  VH  I          +  ALV M+  CG++ +A  +F +
Sbjct: 515 STFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFND 574

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             ++DL++W  +I G   HG+ + A  YFK M  SG +PD   F  +L AC  S +    
Sbjct: 575 MPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC-ASPEALTE 633

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
                ++  +   +  V   T ++++ ++ G      +++   F KL +   K+  S+  
Sbjct: 634 GRRLHALITEAAFDCDVLVGTGLISMYTKCG----SIEDAHQVFHKLPK---KNVYSWTS 686

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
           +   YA  GR K+   +   MQ+  +K  P W
Sbjct: 687 MIAGYAQHGRGKEALELFYQMQQEGVK--PDW 716



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 204/429 (47%), Gaps = 51/429 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I+S  +P N +T   I+    S ++ K+ +QI   II     +  R+ T L+S  +   S
Sbjct: 405 IESGIEP-NRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGS 463

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  A  +F+  + +N+  +N +I    ++  + + ++ F  +L+  ++PN  T+  +   
Sbjct: 464 LKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV 523

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             S   L LG+ +H LI+K+G+E D  V   L  M+V  G    A  +F++ P+++    
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRD---- 579

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM------PKK------------------------ 228
           ++ WN +I G  + G  + A + F MM      P K                        
Sbjct: 580 LVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHA 639

Query: 229 ---------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                    +V     LI  + + G ++ A ++F ++P+K V SWT+MI G++Q+G  ++
Sbjct: 640 LITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKE 699

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
           AL +F+QM   GV+ +  T V ALSACA  G +E G  +H++ S  +F ++  +     +
Sbjct: 700 ALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEG--LHHFQSMKEFNIEPRMEHYGCM 757

Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           VD++ + G + EA   +     E D   W A++    +H   E A +  +K +    +P+
Sbjct: 758 VDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLE--LDPN 815

Query: 397 GTVFLAILT 405
                 IL+
Sbjct: 816 DNGVFVILS 824



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 127/281 (45%), Gaps = 25/281 (8%)

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A++N  S+ G+  +A+ +  ++  + ++    T  + L  C K   L  G R++N+I  
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +       +   L++MYAKCGN  +A  +F + +EKD+ +W  ++ G   HG YE+A + 
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSVKHHTVV 439
            ++M+    +PD   F+++L AC  +  V      ++ +       D F+       T +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFV------GTAL 252

Query: 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           +N+  + G      +   N  T+ L        ++  +    A  GR+K    +   M+ 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDL-------VTWTSMITGLARHGRFKQACNLFQRMEE 305

Query: 500 RSIKKDPGW--SYIEVNGHVHRFEAGGHKLAKEIHSKLEDI 538
             ++ D     S +    H    E G     K++H++++++
Sbjct: 306 EGVQPDKVAFVSLLRACNHPEALEQG-----KKVHARMKEV 341


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 210/550 (38%), Positives = 310/550 (56%), Gaps = 71/550 (12%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           L +  +  T PFV KS A LS + +GR +H   ++ G+E D +V   L DMYV+      
Sbjct: 101 LGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVK------ 154

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
                                     C  IG  RK   LF  M  +++ASW +LI G+M+
Sbjct: 155 --------------------------CGVIGDARK---LFDKMIVRDMASWNALIAGYMK 185

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVV 300
           +G++  A +LFE+M  + +VSWTAMI+G++QNG AE+AL +F +ML  G  ++ N  T+V
Sbjct: 186 EGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIV 245

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE- 359
           S L ACA+  ALE G R+H++ +     L  ++ TAL  MYAKC ++  A   F    + 
Sbjct: 246 SVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQN 305

Query: 360 -KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            K+L+ W  MI   A HG   +A+  F+ M+ +G +PD   F+ +L+ C +SG +   LN
Sbjct: 306 GKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLN 365

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ----------------------------DS 450
            F+ M   + +EP V+H+  VV+LL R G+                              
Sbjct: 366 HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSH 425

Query: 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
           +  + ++ +  +L  L+P +  +YVLLSN+YA  G W++V ++R L++ + +KK PG S+
Sbjct: 426 RNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSW 485

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALG 567
           IE+NG  H F      H  AKEI+  LE +    +  GY+P T +VLH+I +EEKE  L 
Sbjct: 486 IEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLT 545

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLA+AFGL+ T PG  +++ K L ICGDCH+  K+ SKI +REI++RD  RFH FK
Sbjct: 546 THSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFK 605

Query: 627 DGTCSCRDYW 636
           DG+CSC DYW
Sbjct: 606 DGSCSCGDYW 615



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 37/169 (21%)

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALV 338
           L  + +M   G+  ++FT+   L +CA +  +  G  VH        GL+G   +G +L+
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHG--QGLRVGLEGDFYVGASLI 149

Query: 339 DMYAKCGNIEAA----------------SLVFGETKE---------------KDLLTWTA 367
           DMY KCG I  A                +L+ G  KE               +++++WTA
Sbjct: 150 DMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTA 209

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVK 414
           MI G   +G  EQA+  F +M+  G+E  P+    +++L AC  S  ++
Sbjct: 210 MISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 258


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 216/647 (33%), Positives = 343/647 (53%), Gaps = 44/647 (6%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIIL-HNLFASSRITTQLISSASLHKSIDYALSIFD 87
           +TE     ++  +   K L+++H++I++  NL  +  +  +L+ + +      Y   IFD
Sbjct: 36  LTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFD 95

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
             T KN+  FNV+IR    N  +Q  +  F  M      P+  TYP V K+ +    L +
Sbjct: 96  EITDKNVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWV 155

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G  +H  +VK G++ + ++   L  MY +      A +V DE P ++    ++ WN ++ 
Sbjct: 156 GLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRD----MVSWNSMVA 211

Query: 208 GCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKG--DLKKAGELFEQMPEKGV 261
           G ++ G    A++L   M     K +  +  SL+         ++    ++F ++ EK +
Sbjct: 212 GYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSL 271

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           +SW  MI  +  N    +A+ ++ QM   GV  +  ++ S L AC  + A   G R+H Y
Sbjct: 272 ISWNVMIAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEY 331

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +          +  AL+DMYAKCG ++ A  VF +   +D+++WT+MI    + G+ + A
Sbjct: 332 VERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDA 391

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  FKKM  SG  PD   F+++L AC ++G V      F+ M  +Y I P ++H+  +V+
Sbjct: 392 VALFKKMRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVD 450

Query: 442 LLSRVGQDSQGYQ------------------------NSQN----SFTKLLQLKPKHPSS 473
           LL R G+  + Y                         +S N    +   L QL P+    
Sbjct: 451 LLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGY 510

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEI 531
           YVLLSNIYA  GRW+DV  VR++M  + IKK PG S +E+N HV+ F AG   H  +KEI
Sbjct: 511 YVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEI 570

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKI 590
           +  L  ++   +E GYMP T+  LH+++EE +E  L  HSEKLA+ F ++ T PG+TI+I
Sbjct: 571 YKALGVLVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRI 630

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            K + +CGDCH   K  SKI++REI++RDT RFH+F+DG CSC DYW
Sbjct: 631 TKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 356/658 (54%), Gaps = 50/658 (7%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           SS+   N   E     L  SS  T   + +HA +++     S  I+T+L++  +    + 
Sbjct: 9   SSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVS 68

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSV 139
            +   FD    K+++ +N +I     N HF   I  F  +L +S +RP+  T+P V K+ 
Sbjct: 69  LSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC 128

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
            +L     GR +HC   K G +++ FV   L  MY + G T  A  +FD+ P ++     
Sbjct: 129 GTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS-- 183

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSL----IDGFMRKGDLKKAGE 251
             WN +I+G  + G   +A+++   M     K N  + VS+    +D + + G L  A +
Sbjct: 184 --WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHK 241

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVG 310
           +FE +P K V+SW  +I G++QNG A +A+ ++  M +   +  N  T VS L A A VG
Sbjct: 242 VFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVG 301

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           AL+ G+++H  +   +  L   + T L+D+Y KCG +  A  +F +  ++  +TW A+I 
Sbjct: 302 ALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIIS 361

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
              IHG  E+ ++ F +M+  G +PD   F+++L+AC +SG V+     F  M+ +Y I+
Sbjct: 362 CHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQ-EYGIK 420

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTK 462
           PS+KH+  +V+LL R G     Y   ++                            +  +
Sbjct: 421 PSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDR 480

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           L ++  K+   YVLLSNIYA  G+W+ V +VR+L + R +KK PGWS IEVN  V  F  
Sbjct: 481 LFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYT 540

Query: 523 GG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGL 579
           G   H   KEI+ +L  + A  +  GY+P   +VL +++E EKE  L  HSE+LA+AFG+
Sbjct: 541 GNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGI 600

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I T P + I+I K L +CGDCH+  K+ S+I+QREIV+RD+ RFH+FKDG CSC DYW
Sbjct: 601 ISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/656 (33%), Positives = 346/656 (52%), Gaps = 71/656 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA ++ H    +  +   LIS  S    +  A  +FD    ++   +N +I G   N 
Sbjct: 215 QVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNG 274

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                   F  M    V+P  +T+  V KS ASL  L+L + + C  +KSG   D  V  
Sbjct: 275 QDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L     +  +   A  +F    E    ++V+ W  +I+GC + G   +AV LF  M ++
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEE---GKNVVSWTAMISGCLQNGGNDQAVNLFSQMRRE 391

Query: 229 NV-----------------------------------ASWVSLIDGFMRKGDLKKAGELF 253
            V                                   +   +L+D +++ G+   A ++F
Sbjct: 392 GVKPNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGAL 312
           E +  K +++W+AM+ G++Q GE E+A  +F Q++  G++ N+FT  S ++ACA    A 
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           E G + H Y           + +ALV MYAK GNI++A  VF   KE+DL++W +MI G 
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           + HG+ ++A++ F +M     + D   F+ ++TAC ++G V+    +F+SM  D+ I P+
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631

Query: 433 VKHHTVVVNLLSRVG--QDSQGYQNS--------------------------QNSFTKLL 464
           +KH++ +++L SR G  + + G  N                           + +  KL+
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLI 691

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG 524
            L+P+  ++YVLLSN+YAA G W++   VR LM +R +KK+PG+S+IEV    + F AG 
Sbjct: 692 SLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 525 --HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQ 581
             H L+ +I+SKL ++    ++ GY P T+ V H+I++E KE  L  HSE+LA+AFGLI 
Sbjct: 752 LTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIA 811

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           T P   I+IVK L +CGDCH+  K  S + QR IV+RD+ RFH+FKDG CSC DYW
Sbjct: 812 TPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 192/429 (44%), Gaps = 49/429 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           + SS +P  + T + + ++   S   K  RQ+H Q +   L     + T L+      ++
Sbjct: 85  LHSSLQPDES-TLSCVFNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTEN 143

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++    +FD    +N+  +  L+ G + N  +      F  M    V PNR T   V  +
Sbjct: 144 VNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAA 203

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           + +  ++ +G  +H ++VK G E    V   L  +Y +LG  R A  VFD    K +   
Sbjct: 204 LVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFD----KMEIRD 259

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPK--------KNVASW----------- 233
            + WN +I G  + G   +  E+F      G+ P         K+ AS            
Sbjct: 260 WVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQC 319

Query: 234 --------------VSLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAE 278
                          +L+    +  ++  A  LF  M E K VVSWTAMI+G  QNG  +
Sbjct: 320 KALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGND 379

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ +F QM   GV+ N FT  + L+    V   E    +H  +   ++    ++GTAL+
Sbjct: 380 QAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSE----MHAEVIKTNYERSSSVGTALL 435

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           D Y K GN   A  VF   + KDL+ W+AM+ G A  G  E+A + F +++  G +P+  
Sbjct: 436 DAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEF 495

Query: 399 VFLAILTAC 407
            F +++ AC
Sbjct: 496 TFSSVINAC 504



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 46/366 (12%)

Query: 82  ALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           A ++FD     P  L   N L+   + +   +  ++ FV +L  S++P+  T   V    
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A      LGR +HC  VK G+     V   L DMY++        +VFDE  E+N    V
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERN----V 159

Query: 200 LLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV------------------- 234
           + W  L+ G S  G      ELF      G++P +   S V                   
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAM 219

Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                         SLI  + R G L+ A ++F++M  +  V+W +MI G+ +NG+  + 
Sbjct: 220 VVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEV 279

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
             +F +M  AGV+    T  S + +CA +  L     +      + F     + TAL+  
Sbjct: 280 FEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVA 339

Query: 341 YAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
            +KC  ++ A  +F   +E K++++WTAMI G   +G  +QA+  F +M   G +P+   
Sbjct: 340 LSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFT 399

Query: 400 FLAILT 405
           + AILT
Sbjct: 400 YSAILT 405



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 112/219 (51%), Gaps = 11/219 (5%)

Query: 249 AGELFEQMPEKGVV--SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           A  LF+++P +         ++  +S++ + ++AL +F  +L + ++ ++ T+    + C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 307 AKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           A  G+L+  +    +  C  FGL    ++GT+LVDMY K  N+     VF E  E+++++
Sbjct: 104 A--GSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVS 161

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           WT+++ G + +G Y    + F +M Y G  P+      ++ A    G V + L    +M 
Sbjct: 162 WTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQ-VHAMV 220

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
             +  E ++     +++L SR+G      +++++ F K+
Sbjct: 221 VKHGFEEAIPVFNSLISLYSRLGM----LRDARDVFDKM 255


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 230/678 (33%), Positives = 353/678 (52%), Gaps = 81/678 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           SL+       ++R++HAQI    L  ++ +   L+ + S H S+  A   F   T  N H
Sbjct: 40  SLLWQCRGLDEVRKLHAQIAARKLDRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLHNAH 99

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +N+L+   A+N H +   + F +M    VRPN +T      +  +   L+LGR L+ LI
Sbjct: 100 SWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLNELI 159

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
               +E D+ V   L  MY +  +   A + FD +PEK+    V+ W  +I+  +     
Sbjct: 160 ASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKD----VVCWTAMISAYAHNWRT 215

Query: 216 RKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK----------------------- 248
            +A+EL   M     K  + ++VSL+D      DL+                        
Sbjct: 216 SRALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGT 275

Query: 249 -------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
                        A  + + MP +  VSWTAMI  ++QNG A +A+ +F  M   G   +
Sbjct: 276 LVNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPS 335

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           D T++S + +CA +G L  G R+H  I S   F     +  A++ MY KCGN+E A  VF
Sbjct: 336 DITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVF 395

Query: 355 G--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSG 411
                + + ++TWTAMI   A +G  E+AI+ F++M+  G TEP+   FL++L AC + G
Sbjct: 396 ECVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLG 455

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------------------------ 447
           Q++ A   F SM  D+ + P+  H+  +V+LL R G                        
Sbjct: 456 QLEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIA 515

Query: 448 -----QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                Q +   + SQ +  ++ +L+P++ +  VLLSN+YAA+GR  DVAR+R  M+   +
Sbjct: 516 FLSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGV 575

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK  G S+IE+N  VH F      H    EI+S+LE +    +E GY+P T+ VL ++ E
Sbjct: 576 KKFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDE 635

Query: 561 EKE-EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EK+ + LG HSE+LA+A G+I T PGTT+++VK L +C DCH+  K+ S+I  R+I++RD
Sbjct: 636 EKKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRD 695

Query: 620 T-RFHYFKDGTCSCRDYW 636
           T RFH+FKDG CSC DYW
Sbjct: 696 TSRFHHFKDGVCSCGDYW 713


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 222/631 (35%), Positives = 339/631 (53%), Gaps = 76/631 (12%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFNVLIR 102
           KQL+QI AQ+I   +    ++ T+ ++  +     D  YA  +F+  T  N  ++N +IR
Sbjct: 2   KQLKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLLYAQRVFNGITSPNTFMWNAIIR 61

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL--HCLIVKSGV 160
             + +   +     +  ML  SV  N  T+PF+ +  A  +LL++G  L  H L++K G 
Sbjct: 62  AYSNSDEPELAFLSYQQMLSSSVPHNSYTFPFLLR--ACRNLLAMGEALQVHGLVIKLGF 119

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             D F    L  +Y   G+   A ++FD  PE++     + WN++I+G  K G ++ A  
Sbjct: 120 GSDVFALNALLHVYALCGEIHCARQLFDNIPERD----AVSWNIMIDGYIKSGDVKTAYG 175

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           +F  MP KNV SW SLI G +                               + G++ +A
Sbjct: 176 VFLDMPLKNVVSWTSLISGLV-------------------------------EAGQSVEA 204

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           L++ ++M +AG   +   + S L+ACA +GAL+ G  +H Y+  N   +   IG ALV+M
Sbjct: 205 LSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCALVNM 264

Query: 341 YAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           Y KCG++E A  VFG+ K  +KD+  WTAMI G AIHGR  +A+++F +M   G  P+  
Sbjct: 265 YVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREGIRPNSI 324

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458
            F A+L AC Y G V+     F SM+  Y + PS++H+  +V+LL R G+  +  +  + 
Sbjct: 325 TFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEAKELIKK 384

Query: 459 SFTK----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
              K                            L+++   H   Y+ L+ I AAEG+WK+ 
Sbjct: 385 MPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEVDSDHSGRYIQLATILAAEGKWKEA 444

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR-EQGY 547
           A VR  M+   +   PG S + +NG VH F AG   H   ++I  KL+ I    R ++GY
Sbjct: 445 AEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQDHPQMEQIQLKLKQIAERLRQDEGY 504

Query: 548 MPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
            P T+ +L +++ EEKE A+  HSEKLA+AFGLI T PGTTI+++K L IC DCH++ K 
Sbjct: 505 EPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINTKPGTTIRVIKNLRICRDCHTVAKL 564

Query: 607 ASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            S+I  REI++RD  RFH+F+DG+CSC+DYW
Sbjct: 565 VSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 64/307 (20%), Positives = 126/307 (41%), Gaps = 42/307 (13%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           SS  P N+ T   ++    +  +  +  Q+H  +I     +       L+   +L   I 
Sbjct: 81  SSSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVFALNALLHVYALCGEIH 140

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVS--K 137
            A  +FD+   ++   +N++I G  ++   ++    F+ M L+  V    L    V   +
Sbjct: 141 CARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKNVVSWTSLISGLVEAGQ 200

Query: 138 SVASLSL----------------------------LSLGRGLHCLIVKSGVEYDAFVRVH 169
           SV +LSL                            L  GR LH  ++ +GV+ D  +   
Sbjct: 201 SVEALSLCYEMQNAGFELDGVAIASLLTACANLGALDQGRWLHFYVLNNGVDVDRVIGCA 260

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK- 228
           L +MYV+ G    A  VF +   K   + V +W  +I+G +  G   +A+E F  M ++ 
Sbjct: 261 LVNMYVKCGDMEEALSVFGKL--KGNQKDVYIWTAMIDGFAIHGRGVEALEWFNRMRREG 318

Query: 229 ---NVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
              N  ++ +++      G +++  ELF+ M         +  +  M++   ++G  ++A
Sbjct: 319 IRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHYGCMVDLLGRSGRLDEA 378

Query: 281 LAMFFQM 287
             +  +M
Sbjct: 379 KELIKKM 385


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/647 (33%), Positives = 346/647 (53%), Gaps = 74/647 (11%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--SASLHKSI-DYALSI 85
           + E  ++ ++   +S  Q +++HAQI + NL  SS + T+L+   +A  H  +  Y   +
Sbjct: 6   VLEWEVVRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLL 65

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F      N   +  LIR  A        +S +  M +  V P   T+  +  + A++   
Sbjct: 66  FSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHS 125

Query: 146 SLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           +LG  LH   ++  G   D +V   + DMYV                             
Sbjct: 126 ALGAQLHAQTLLLGGFSSDLYVNNAVIDMYV----------------------------- 156

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                 K G LR A  +F  MP+++V SW  LI  + R GD++ A +LF+ +P K +V+W
Sbjct: 157 ------KCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTW 210

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           TAM+ G++QN     AL +F ++ D GV  ++ T+V  +SACA++GA +    + +    
Sbjct: 211 TAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGASKYANWIRDIAES 270

Query: 325 NDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           + FG+     +G+AL+DMY+KCGN+E A  VF   +E+++ ++++MI G AIHGR   AI
Sbjct: 271 SGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIVGFAIHGRARAAI 330

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
           + F  M+ +G +P+   F+ +LTAC ++G V      F SM   Y + P+ + +  + +L
Sbjct: 331 KLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDL 390

Query: 443 LSRVGQDSQGYQ----------------------------NSQNSFTKLLQLKPKHPSSY 474
           LSR G   +  Q                             ++ +  +L +L+P +  +Y
Sbjct: 391 LSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKRLFELEPDNIGNY 450

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV-NGHVHRFEAG--GHKLAKEI 531
           +LLSN YA+ GRW DV++VR L++ +++KK+PGWS++E  NG +H+F AG   H    EI
Sbjct: 451 LLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEI 510

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
             +L D++   +  GY P    + + I + EK   L  HSEKLALAFGL+ T  G+TIKI
Sbjct: 511 KKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAHSEKLALAFGLLSTDVGSTIKI 570

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K L IC DCH +M  ASK++ R+IV+RD TRFH+F +G CSC ++W
Sbjct: 571 MKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNGACSCSNFW 617


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/630 (35%), Positives = 330/630 (52%), Gaps = 72/630 (11%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNV 99
           S S    R +HA ++   +  ++ + + L+++ +       A ++     TP     +N 
Sbjct: 36  SGSAAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDTPVA---WNA 92

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-LSLGRGLHCLIVKS 158
           LI G      F      FV M R    P  +TY  V  +    +  + LG  +H  +V S
Sbjct: 93  LISGHNRGGRFGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGS 152

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           GV  D  V   L DMY +      A+KVFD                              
Sbjct: 153 GVLPDLRVENALVDMYAECADMGSAWKVFDG----------------------------- 183

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                 M  ++V SW SL+ G  R G + +A +LF++MPE+  VSWTAMI+G+       
Sbjct: 184 ------MQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFR 237

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +AL MF +M  + V A++FT+VS ++ACA++GALE G  V  Y+S     +   +G AL+
Sbjct: 238 EALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALI 297

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMY+KCG+IE A  VF     +D  TWTA+I GLA++G  E+AI+ F +M+     PD  
Sbjct: 298 DMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEV 357

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN-SQ 457
            F+ +LTAC ++G V     FF SM   Y I P+V H+  +++LL R G+ ++      Q
Sbjct: 358 TFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQ 417

Query: 458 NSFT---------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
              T                           +LL+L P++   Y+LLSNIYA   RW+DV
Sbjct: 418 MPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPENSMVYILLSNIYAKCNRWEDV 477

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
            R+R  +  + IKK+PG S IE++G +H F AG   H ++KEI+SKLE I++     GY 
Sbjct: 478 RRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQSHPMSKEIYSKLESIISDLNNVGYF 537

Query: 549 PGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P    V   + E EK++ L  HSEKLA+AF L+ + P T I+IVK L +C DCH+ +K  
Sbjct: 538 PDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSSKPNTVIRIVKNLRMCLDCHNAIKLI 597

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           S++  RE+V+RD TRFH+F+ G CSC+DYW
Sbjct: 598 SRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/648 (34%), Positives = 345/648 (53%), Gaps = 75/648 (11%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSI 85
           I+   ++S++    S  +LRQIHAQ+I  NL       ++LI+  SL      +DYA S+
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASLS 143
           F      N  IF  LI+G ++ S+    +  +  ML      + + +  P V K+   L 
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               GR +H  ++K+ + +D FV   +  MY+  G+   A +VFD               
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR-------------- 169

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                                MP ++V SW S+I G+++ G+++ A ++FE M +K VV+
Sbjct: 170 ---------------------MPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVT 208

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           WT+MI+ + QN    KAL +F +ML  G+R +   +VS LSA A +G +E G  +H Y+S
Sbjct: 209 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 268

Query: 324 CNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQA 381
            N   L  G IG+AL+DMY+KCG IE A  VF   +  +++  W +MI GLAIHG   +A
Sbjct: 269 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 328

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F +M     EP+   FL +L+ C + G V+    +F+SM   Y I P ++H+  +++
Sbjct: 329 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 388

Query: 442 LLSRVG--QDSQGY-QN-------------------------SQNSFTKLLQLKPKHPSS 473
           L  R G  +D+ G  QN                          +++  + ++L P   SS
Sbjct: 389 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSS 448

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGH---KLAKE 530
           YVLLSNIYA  GRW DVA++R +M++R +KK  G S + VNG VH F  G       + +
Sbjct: 449 YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQ 508

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           + +K+ ++++  + QGY P    VL +I++E KE  L  HSEK+A+AFGLI       I 
Sbjct: 509 VLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIH 568

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH  MK  SK+  R+I++RD  RFH+F++G CSC +YW
Sbjct: 569 IVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 616


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/564 (38%), Positives = 312/564 (55%), Gaps = 70/564 (12%)

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK---- 185
           +TYPFV K+    S+   G  +H  +VKSG E D+++   L  +Y   GK  GA K    
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYAN-GKDLGAAKQLFS 59

Query: 186 ----------------------------VFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
                                       VFD    ++    V+ WN +ING + +G + +
Sbjct: 60  LCSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRD----VISWNTIINGYAIVGKIDE 115

Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
           A  LF  MP++N+ SW S++ GF++ G++++A  LF +MP + VVSW +M+  ++Q G+ 
Sbjct: 116 AKRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKP 175

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +ALA+F QM   GV+  + TVVS LSACA +GAL+ G+ +H YI+ N   +   +GTAL
Sbjct: 176 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 235

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           VDMYAKCG I  A+ VF   + KD+L W  +I G+AIHG  ++A Q FK+M  +  EP+ 
Sbjct: 236 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPND 295

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----- 452
             F+A+L+AC ++G V       D M   Y IEP V+H+  V++LL+R G   +      
Sbjct: 296 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIG 355

Query: 453 -----------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                                  ++  +    +L+ L+P H   Y+LLSNIYAA  +W D
Sbjct: 356 TMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDD 415

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ-G 546
             +VR LM+   I K PG S IE+ G VHRF AG   H  + +I+ KL +I    +   G
Sbjct: 416 ARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIG 475

Query: 547 YMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMK 605
           Y   T  VL +++EE KE AL  HSEKLA+A+GL+       I+IVK L +C DCH + K
Sbjct: 476 YSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTK 535

Query: 606 YASKISQREIVLRD-TRFHYFKDG 628
             SK+  REI++RD  RFH+F+DG
Sbjct: 536 LISKVYGREIIVRDRNRFHHFEDG 559



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 124/272 (45%), Gaps = 31/272 (11%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           +++ A  +F     +++  +N ++   A+       ++ F  M  + V+P   T   +  
Sbjct: 143 NVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLS 202

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A L  L  G  LH  I  + +E ++ V   L DMY + GK   A +VF+      +S+
Sbjct: 203 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM----ESK 258

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
            VL WN +I G +  G++++A +LF  M + +V     ++V+++      G + +  +L 
Sbjct: 259 DVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLL 318

Query: 254 EQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           + M      E  V  +  +I+  ++ G  E+A+ +   M    +  N     SAL     
Sbjct: 319 DCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTM---PMEPNP----SAL----- 366

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
            GAL  G R+H      +F L   +G  L+++
Sbjct: 367 -GALLGGCRIH-----GNFELGEMVGKRLINL 392



 Score = 43.1 bits (100), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 85/197 (43%), Gaps = 16/197 (8%)

Query: 30  TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE  ++SL+ +      L +   +H  I  + +  +S + T L+   +    I  A  +F
Sbjct: 193 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 252

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    K++  +N +I G+A + H +     F  M   SV PN +T+  +  + +   ++ 
Sbjct: 253 NAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVD 312

Query: 147 LGRG-LHCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSE-S 198
            G+  L C+    G+E     YD  +     D+  + G    A ++    P E N S   
Sbjct: 313 EGQKLLDCMSSSYGIEPKVEHYDCVI-----DLLARAGLLEEAMELIGTMPMEPNPSALG 367

Query: 199 VLLWNVLINGCSKIGYL 215
            LL    I+G  ++G +
Sbjct: 368 ALLGGCRIHGNFELGEM 384


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/685 (32%), Positives = 367/685 (53%), Gaps = 79/685 (11%)

Query: 27   NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            +++T   I+S    ++      QIHA +I  +      ++  L++  S    +  A   F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 87   DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS--- 143
             +    +L  +N +I   A+N+     I  F  +LR  ++P++ T   V ++ ++     
Sbjct: 953  INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGE 1012

Query: 144  LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
              +LG  +H   +K G+  D+FV   L D+Y + GK   A  +     + + +     WN
Sbjct: 1013 YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLAS----WN 1068

Query: 204  VLINGCSKIGYLRKAVELFGMMPKKNV------------AS------------------- 232
             ++ G  K    RKA+E F +M +  +            AS                   
Sbjct: 1069 AIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKL 1128

Query: 233  ------WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                  WVS  ++D +++ GD+  A ELF ++     V+WT MI+G+ +NG+ + AL+++
Sbjct: 1129 GFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVY 1188

Query: 285  FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
              M  +GV+ +++T  + + A + + ALE G ++H  +   D+ L   +GT+LVDMY KC
Sbjct: 1189 HLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKC 1248

Query: 345  GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            G+++ A  VF +   + ++ W AM+ GLA HG  ++A+  F+ M  +G +PD   F+ +L
Sbjct: 1249 GSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVL 1308

Query: 405  TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGY--------- 453
            +AC +SG    A  +FD+M   Y I P ++H++ +V+ L R G  Q+++           
Sbjct: 1309 SACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKAS 1368

Query: 454  -----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                             + ++    KLL L P   S+YVLLSNIYAA  +W DV   R +
Sbjct: 1369 ASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNM 1428

Query: 497  MQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQG-YMPGTEW 553
            M+ +++KKDPG+S+I+V   VH F  +   H  A  I+ K+ED+M   RE+G Y+P T++
Sbjct: 1429 MKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDF 1488

Query: 554  VLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
             L ++ +EEKE AL  HSEKLA+AFGLI T P  TI+++K L +CGDCHS +K  SK++Q
Sbjct: 1489 TLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQ 1548

Query: 613  REIVLRD-TRFHYFKDGTCSCRDYW 636
            REIVLRD  RFH+F++GTCSC DYW
Sbjct: 1549 REIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 23/379 (6%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE- 106
            ++ HA+I+         +T  LI+  S   S+  A  +FD  + ++L  +N ++   A+ 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 107  -NSHFQSCISHFVF--MLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
             +S +++ +  F    +LR       RLT   + K       + +   +H   VK G E 
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 163  DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
            D FV   L ++Y + G    A  +FD+ PE++     +LWNV++    +  +  +A+  F
Sbjct: 751  DLFVSGALVNIYCKYGLVGQARLLFDKMPERD----AVLWNVMLKAYVENSFQDEALRFF 806

Query: 223  ------GMMPK-KNVASWVSLIDGFMRKGDLKKAGE-------LFEQMPEKGVVSWTAMI 268
                  G  P   N+   +  ++  +     + A +       +F       + +W   +
Sbjct: 807  SAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKL 866

Query: 269  NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
              F   G+   A+  F  +L + +  +  T+V  LSA      L+ G ++H  +  + F 
Sbjct: 867  TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 329  LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
                +  +L++MY+K G + AA   F  + E DL++W  MI   A +    +AI  F+ +
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 389  MYSGTEPDGTVFLAILTAC 407
            +  G +PD     ++L AC
Sbjct: 987  LRDGLKPDQFTLASVLRAC 1005


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 226/685 (32%), Positives = 367/685 (53%), Gaps = 79/685 (11%)

Query: 27   NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            +++T   I+S    ++      QIHA +I  +      ++  L++  S    +  A   F
Sbjct: 893  DSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTF 952

Query: 87   DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS--- 143
             +    +L  +N +I   A+N+     I  F  +LR  ++P++ T   V ++ ++     
Sbjct: 953  INSPELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGE 1012

Query: 144  LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
              +LG  +H   +K G+  D+FV   L D+Y + GK   A  +     + + +     WN
Sbjct: 1013 YFTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLAS----WN 1068

Query: 204  VLINGCSKIGYLRKAVELFGMMPKKNV------------AS------------------- 232
             ++ G  K    RKA+E F +M +  +            AS                   
Sbjct: 1069 AIMFGYIKSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKL 1128

Query: 233  ------WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                  WVS  ++D +++ GD+  A ELF ++     V+WT MI+G+ +NG+ + AL+++
Sbjct: 1129 GFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVY 1188

Query: 285  FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
              M  +GV+ +++T  + + A + + ALE G ++H  +   D+ L   +GT+LVDMY KC
Sbjct: 1189 HLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKC 1248

Query: 345  GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            G+++ A  VF +   + ++ W AM+ GLA HG  ++A+  F+ M  +G +PD   F+ +L
Sbjct: 1249 GSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVL 1308

Query: 405  TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGY--------- 453
            +AC +SG    A  +FD+M   Y I P ++H++ +V+ L R G  Q+++           
Sbjct: 1309 SACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKAS 1368

Query: 454  -----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                             + ++    KLL L P   S+YVLLSNIYAA  +W DV   R +
Sbjct: 1369 ASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNM 1428

Query: 497  MQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQG-YMPGTEW 553
            M+ +++KKDPG+S+I+V   VH F  +   H  A  I+ K+ED+M   RE+G Y+P T++
Sbjct: 1429 MKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDF 1488

Query: 554  VLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
             L ++ +EEKE AL  HSEKLA+AFGLI T P  TI+++K L +CGDCHS +K  SK++Q
Sbjct: 1489 TLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQ 1548

Query: 613  REIVLRD-TRFHYFKDGTCSCRDYW 636
            REIVLRD  RFH+F++GTCSC DYW
Sbjct: 1549 REIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 167/379 (44%), Gaps = 23/379 (6%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE- 106
            ++ HA+I+         +T  LI+  S   S+  A  +FD  + ++L  +N ++   A+ 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 107  -NSHFQSCISHFVF--MLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
             +S +++ +  F    +LR       RLT   + K       + +   +H   VK G E 
Sbjct: 691  ADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFEL 750

Query: 163  DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
            D FV   L ++Y + G    A  +FD+ PE++     +LWNV++    +  +  +A+  F
Sbjct: 751  DLFVSGALVNIYCKYGLVGQARLLFDKMPERD----AVLWNVMLKAYVENSFQDEALRFF 806

Query: 223  ------GMMPK-KNVASWVSLIDGFMRKGDLKKAGE-------LFEQMPEKGVVSWTAMI 268
                  G  P   N+   +  ++  +     + A +       +F       + +W   +
Sbjct: 807  SAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKL 866

Query: 269  NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
              F   G+   A+  F  +L + +  +  T+V  LSA      L+ G ++H  +  + F 
Sbjct: 867  TEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFA 926

Query: 329  LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
                +  +L++MY+K G + AA   F  + E DL++W  MI   A +    +AI  F+ +
Sbjct: 927  PVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDL 986

Query: 389  MYSGTEPDGTVFLAILTAC 407
            +  G +PD     ++L AC
Sbjct: 987  LRDGLKPDQFTLASVLRAC 1005


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 219/681 (32%), Positives = 363/681 (53%), Gaps = 72/681 (10%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N  T   ++  + +  + ++  Q+H  +I   L ++  +   +++  S    +  A 
Sbjct: 190 KP-NPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAK 248

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           ++FD    +N   +N +I G   N         F  M    V+  +  +  V K  A++ 
Sbjct: 249 AVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIK 308

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            +S  + LHC ++K+G ++D  ++  L   Y +  +   AFK+F      +  ++V+ W 
Sbjct: 309 EMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLF---CMMHGVQNVVSWT 365

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV--------------------------------- 230
            +I+G  + G   +A+ LF  M ++ V                                 
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKTNYEN 425

Query: 231 --ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
             +   +L D + + GD  +A ++FE + EK +V+W+AM++G++Q G+ E A+ +F Q+ 
Sbjct: 426 SPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLA 485

Query: 289 DAGVRANDFTVVSALSACA-KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
             GV  N+FT  S L+ACA    ++E G + H+    + F     + +ALV MYAK GNI
Sbjct: 486 KEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI 545

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E+A+ VF    ++DL++W +MI G A HG  +++++ F++M     E DG  F+ +++AC
Sbjct: 546 ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 605

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------------- 453
            ++G V     +FD M  DY I P+++H++ +V+L SR G   +                
Sbjct: 606 THAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATI 665

Query: 454 --------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                         Q  + +  KL+ L+P+  ++YVLLSNIYA  G W++ A+VR LM  
Sbjct: 666 WRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDM 725

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + +KK+ G+S+IEV      F AG   H  +  I+ KLE++    ++ GY P T++VLH+
Sbjct: 726 KKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHD 785

Query: 558 IKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++EE KE  L  HSE+LA+AFGLI T PGT I+IVK L +CGDCH+++K  SKI  R+IV
Sbjct: 786 VEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIV 845

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
           +RD+ RFH+FK G+CSC DYW
Sbjct: 846 VRDSNRFHHFKGGSCSCGDYW 866



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 183/400 (45%), Gaps = 48/400 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H Q I         + T L+      +S++    +FD    KN+  +  L+ G  +N
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M    ++PN  T+  V   +A+   +  G  +H +++KSG++   FV 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             + +MY +      A  VFD    +N     + WN +I G    G   +A ELF  M  
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRN----AVSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 228 KNV-------ASWV--------------------------------SLIDGFMRKGDLKK 248
           + V       A+ +                                +L+  + +  ++  
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDD 347

Query: 249 AGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           A +LF  M   + VVSWTA+I+G+ QNG  ++A+ +F QM   GVR N FT  + L+A A
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANA 407

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            V    +  ++H  +   ++    ++GTAL D Y+K G+   A+ +F    EKD++ W+A
Sbjct: 408 AV----SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSA 463

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           M+ G A  G  E A++ F ++   G EP+   F ++L AC
Sbjct: 464 MLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNAC 503



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 156/364 (42%), Gaps = 48/364 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    + L   N L+   + N   +  ++ F+ + R     +  +   V K    L  
Sbjct: 48  LFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFD 107

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             +G+ +HC  +K G   D  V   L DMY++        +VFDE   KN    V+ W  
Sbjct: 108 RIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN----VVSWTS 163

Query: 205 LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK------------ 248
           L+ G  + G   +A++LF  M     K N  ++ +++ G    G ++K            
Sbjct: 164 LLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG 223

Query: 249 -----------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                                  A  +F+ M  +  VSW +MI GF  NG   +A  +F+
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN--DFGLKGAIGTALVDMYAK 343
           +M   GV+       + +  CA +  +    ++H  +  N  DF L   I TAL+  Y+K
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN--IKTALMVAYSK 341

Query: 344 CGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           C  I+ A  +F      +++++WTA+I G   +GR ++A+  F +M   G  P+   +  
Sbjct: 342 CSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYST 401

Query: 403 ILTA 406
           ILTA
Sbjct: 402 ILTA 405



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           +LF++ P++G+     ++  FS+N + ++AL +F  +  +G   +  ++   L  C  + 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 311 ALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
               G +VH   I C  F    ++GT+LVDMY K  ++E    VF E + K++++WT+++
Sbjct: 107 DRIVGKQVHCQCIKCG-FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            G   +G  EQA++ F +M   G +P+   F A+L      G V+
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVE 210


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/444 (43%), Positives = 273/444 (61%), Gaps = 32/444 (7%)

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           MP+K++ S  ++I  + + G + +A  LF+ + E+  + W  MI+G++Q+G   + L +F
Sbjct: 1   MPEKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLF 60

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            QML+A VR N+ TV++ LSAC + GALE G  VH+YI  N  G+   +GT+L+DMY+KC
Sbjct: 61  RQMLNAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKC 120

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G++E A LVF     KD++ W +M+ G A+HG  + A++ FK+M   G +P    F+ +L
Sbjct: 121 GSLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVL 180

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-- 462
            AC ++G V     FF SM+ +Y IEP V+H+  +VNLL R G   + Y+  +N      
Sbjct: 181 NACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQD 240

Query: 463 --------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                                     L+     +  +YVLLSNIYAA G W+ VARVRTL
Sbjct: 241 PVLWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTL 300

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           M+    +K+PG S IEVN  VH F AG   H  ++EI+  LE+I    +  GY P T+ V
Sbjct: 301 MKESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIV 360

Query: 555 LHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           LH++++ +KE +LG HSEKLALAFGLI T PGTTIKIVK L +C DCH++ K  SKI+ R
Sbjct: 361 LHDLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGR 420

Query: 614 EIVLRD-TRFHYFKDGTCSCRDYW 636
           ++V+RD  RFH+F +G CSC DYW
Sbjct: 421 KVVMRDRNRFHHFVNGLCSCGDYW 444



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 127/302 (42%), Gaps = 17/302 (5%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +I+  + +  ID A  +FD    ++   +NV+I G A++      +  F  ML   VR
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           PN +T   V  +      L  GR +H  I  +G+  +  V   L DMY + G    A  V
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLV 129

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242
           F+    K+    V+ WN ++ G +  G+ + A+ LF  M     +    +++ +++    
Sbjct: 130 FERISNKD----VVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSH 185

Query: 243 KGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G + +  + F  M      E  V  +  M+N   + G  E+A  +   M    +  +  
Sbjct: 186 AGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNM---EIDQDPV 242

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
              + L AC   G +  G ++  Y+   +    G     L ++YA  GN E  + V    
Sbjct: 243 LWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTY-VLLSNIYAAAGNWEGVARVRTLM 301

Query: 358 KE 359
           KE
Sbjct: 302 KE 303



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 46/238 (19%), Positives = 102/238 (42%), Gaps = 7/238 (2%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T   ++S    + + +  R +H+ I  + +  + R+ T LI   S   S++ A  +F
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +  + K++  +N ++ G A +   Q  +  F  M  +  +P  +T+  V  + +   L+S
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G +  + +  + G+E       H   M   LG+     + ++        +  +LW  L
Sbjct: 191 EGWKFFYSMKDEYGIEPKV---EHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTL 247

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA---SWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +  C   G +    ++   +  +N+A   ++V L + +   G+ +    +   M E G
Sbjct: 248 LGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESG 305


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 215/649 (33%), Positives = 340/649 (52%), Gaps = 47/649 (7%)

Query: 29   ITETHIISLIHSSNSTKQLRQIHAQI-ILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
            +TE     ++  +   K L+++H++I I H+L ++  +  +L+ + ++         IFD
Sbjct: 1025 LTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFD 1084

Query: 88   HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
                KN+  FNV+IR    N  +   +  F  M    + P+  TYP V K+ +    L +
Sbjct: 1085 EIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWV 1144

Query: 148  GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
            G  +H  +V+ G++ + FV   L  MY + G    A +V DZ P ++    V+ WN L+ 
Sbjct: 1145 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDZMPCRD----VVSWNSLVA 1200

Query: 208  GCSKIGYLRKAVE------LFGMMPKKNVASWVSLIDGFMRK--GDLKKAGELFEQMPEK 259
            GC++ G    A+E      L G+ P  +  +  SL+         ++    E+F ++  K
Sbjct: 1201 GCARNGQFDDALEVCKEMELLGLKP--DAGTMASLLPAVTNTCLDNVSFVKEMFMKLANK 1258

Query: 260  GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
             +VSW  MI  +  N    +A+ +F QM D  V  +  ++ S L AC  + AL  G R+H
Sbjct: 1259 SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 1318

Query: 320  NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             Y+          +  AL+DMYAKCG +E A  VF + K +D+++WT+MI    ++G+  
Sbjct: 1319 EYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGR 1378

Query: 380  QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
             A+  F +M   G  PD   F+++L+AC ++G +     +F  M  +  I P ++H   +
Sbjct: 1379 DAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCM 1438

Query: 440  VNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHP 471
            V+LL R GQ  + Y   +                             +  +L QL P+  
Sbjct: 1439 VDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQS 1498

Query: 472  SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
              YVLLSNIYA  GRW+DV  VR++M+ + IKK PG S  E++  VH F AG   H  +K
Sbjct: 1499 GYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSK 1558

Query: 530  EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTI 588
            +I+ +L+ ++   +E GY+P T+  LH+++EE +E  L  HSEKLA+AF ++ T PG+ I
Sbjct: 1559 QIYEELDVLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPI 1618

Query: 589  KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +I K L +CGDCH   K  SKI  REI +RDT RFH+F +G CSC DYW
Sbjct: 1619 RITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 214/670 (31%), Positives = 369/670 (55%), Gaps = 57/670 (8%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISL------IHSSNSTKQLRQIHAQIILHNL 59
           +N + +      N+ ++    N + E  ++S          +   ++ R+I  Q+++ N 
Sbjct: 125 WNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE 184

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            +       L+S+   +  I+ A  +FD      +  +N L+ G           S F  
Sbjct: 185 IS----WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD- 239

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLG 178
             R+ VR +++++  +    A   LLS  R L   L ++     D F    +   +VQ G
Sbjct: 240 --RMPVR-DKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNG 291

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
               A ++F+E PEKN+    + WN +I G  +   + KA ELF  MP +N +SW +++ 
Sbjct: 292 MLDEATRIFEEMPEKNE----VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVT 347

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G+ + G++ +A  LF++MP++  +SW AMI+G++Q+G++E+AL +F +M   G   N   
Sbjct: 348 GYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +  ALS+CA++ ALE G ++H  +    F      G AL+ MY KCG+IE A  VF +  
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT 467

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           EKD+++W  MI G A HG  ++A+  F+ M  +  +PD    + +L+AC ++G V   + 
Sbjct: 468 EKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGLVDKGME 526

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---------YQNS------------- 456
           +F+SM  +Y I  + KH+T +++LL R G+  +          Y ++             
Sbjct: 527 YFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIH 586

Query: 457 ------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                 + +  K+ +++P +   YVLLSN+YAA GRW++V  +R+ M+ + +KK PG+S+
Sbjct: 587 GDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSW 646

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           +E+    H F  G   H  A+ I++ LE++    ++ G++  T+ VLH+++EE KE  L 
Sbjct: 647 VEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLK 706

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
            HSEKLA+AFG++   PG  I+++K L +C DCH+ +K+ SKI+QR+I++RD+ RFH+F 
Sbjct: 707 YHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFS 766

Query: 627 DGTCSCRDYW 636
           +G+CSC DYW
Sbjct: 767 EGSCSCGDYW 776



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 165/340 (48%), Gaps = 22/340 (6%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +IS    +   D A  +F+    ++L  +NV++ G  +N +  +  + F  M    V   
Sbjct: 97  MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV--- 153

Query: 129 RLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
            +++  +    A    +   R +   ++VK+ + ++      L   YVQ G+   A ++F
Sbjct: 154 -VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF 207

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           D   +      ++ WN L+ G  +   L  A  LF  MP ++  SW  +I G+ + G L 
Sbjct: 208 DSKMDW----EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A  LFE++P + V +WTAM++GF QNG  ++A  +F +M +     N+ +  + ++   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYV 319

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +   +E    + + +   +     +    +V  YA+CGNI+ A ++F E  ++D ++W A
Sbjct: 320 QSQQIEKARELFDQMPSRN----TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           MI G A  G+ E+A+  F KM   G   + +     L++C
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSC 415



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 39/277 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y++ G+   A  VF+      +  S + +N +I+G         A ++F  MP +++ SW
Sbjct: 70  YMRKGQCESALSVFNGM----RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISW 125

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             ++ G+++ G+L  A  LF QMPEK VVSW AM++GF+QNG  E+A  +F QML     
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----V 181

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHN------YISCN----DFGLKGAIGTA------- 336
            N+ +    LSA  + G +E   R+ +       +S N     +  K  +  A       
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241

Query: 337 ----------LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                     ++  YA+ G +  A  +F E   +D+  WTAM+ G   +G  ++A + F+
Sbjct: 242 PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +M     E +   + A++     S Q++ A   FD M
Sbjct: 302 EM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           ++ WN  I+   + G    A+ +F  M +++  ++ ++I G++       A ++FE+MP+
Sbjct: 60  IVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPD 119

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + ++SW  M++G+ +NG    A A+F QM +  V     +  + LS  A+ G +E   ++
Sbjct: 120 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARKI 175

Query: 319 HNYISC-NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
            + +   N+    G     L+  Y + G IE A  +F    + ++++W  ++ G     R
Sbjct: 176 FDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKR 230

Query: 378 YEQAIQYFKKM 388
            + A   F +M
Sbjct: 231 LDDARSLFDRM 241


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 225/636 (35%), Positives = 332/636 (52%), Gaps = 68/636 (10%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++  +   +S   +R +HA ++   +  ++ + T L+++ +       A ++        
Sbjct: 49  LLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDT 108

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV-SKSVASLSLLSLGRGLH 152
             ++N LI G      F      FV M R    P  +TY  V S        + LG  +H
Sbjct: 109 PVVWNALISGHNRCRRFGEACCSFVDMARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVH 168

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             +V SGV  D  V   L DMY +      A+K                           
Sbjct: 169 GRVVGSGVLPDLRVENALVDMYAECADMESAWK--------------------------- 201

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                   LF  M  ++V SW SL+ G  R G + +A +LF +MPE+  VSWTAMI+G+ 
Sbjct: 202 --------LFDGMQVRSVVSWTSLLSGLTRLGRVDEARDLFGRMPERDTVSWTAMIDGYV 253

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q     +AL MF +M  + V A++FT+VS ++ACA++GALE G  V  Y+S     +   
Sbjct: 254 QAARFREALEMFREMQCSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAF 313

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G AL+DMY+KCG+IE A  VF +   +D  TWTA+I GLA++G  E+AI+ F +M+   
Sbjct: 314 VGNALIDMYSKCGSIERALDVFKDMHHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVS 373

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
             PD   F+ +LTAC ++G V     FF SMR  Y I P+V H+  +++L  R G+ ++ 
Sbjct: 374 ETPDEVTFIGVLTACTHAGLVDKGREFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEA 433

Query: 453 YQN-SQNSFT---------------------------KLLQLKPKHPSSYVLLSNIYAAE 484
                Q   T                           +LLQ+ P++ + Y LLSNIYA  
Sbjct: 434 LDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVTERLLQMDPENSTVYTLLSNIYAKC 493

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGA 542
            RW+DV R+R  +  + IKK+PG S IE+NG +H F AG   H ++KEI+ KLE I+   
Sbjct: 494 NRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIHEFVAGDQSHPMSKEIYCKLESIINDL 553

Query: 543 REQGYMPG-TEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
              GY P  TE  +   +EEK++ L  HSEKLA+AF L+ + P T I+IVK L +C DCH
Sbjct: 554 NNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAIAFALLSSEPNTVIRIVKNLRMCLDCH 613

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + +K  S++  RE+V+RD TRFH+F+ G CSC+DYW
Sbjct: 614 NAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 649


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 233/720 (32%), Positives = 363/720 (50%), Gaps = 117/720 (16%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLF-----ASSRITTQLISSASLHKSIDY 81
           N +  T+I+  I    +T QL+QIHA ++  + F     AS  +T   ISS S    + Y
Sbjct: 68  NEVESTNILEFIDQCTNTMQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCS---CLIY 124

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVA 140
           A ++F+     NL+ +N LIRG A +S        F+ ML   S  PN+ T+PF+ K+ +
Sbjct: 125 AKNVFNQIPQPNLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAAS 184

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L +L LG  LH +++K+ +  D F+   L + Y   G    A +VF   P K+    V+
Sbjct: 185 RLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKD----VV 240

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV---- 234
            WN +IN  +  G   KA+ LF  M  K+V                        W+    
Sbjct: 241 SWNAMINAFALGGLPDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYI 300

Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING----------- 270
                        +++D +++ G +  A +LF +M EK +VSWT M++G           
Sbjct: 301 ENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAH 360

Query: 271 --------------------FSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKV 309
                               + QNG+   AL++F +M L    + ++ T++ AL A A++
Sbjct: 361 CIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQL 420

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           GA++ G  +H YI  +D  L   + T+L+DMYAKCGN+  A  VF   + KD+  W+AMI
Sbjct: 421 GAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMI 480

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
             LA++G+ + A+  F  M+ +  +P+   F  IL AC ++G V      F+ M   Y I
Sbjct: 481 GALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGI 540

Query: 430 EPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQNSFT 461
            P ++H+  VV++  R G   +                              + ++ ++ 
Sbjct: 541 VPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQ 600

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
            LL+L+P +  ++VLLSNIYA  G W+ V+ +R LM+   +KK+P  S I+VNG VH F 
Sbjct: 601 NLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFL 660

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEK--EEALGCHSEKLALAF 577
            G   H  +++I+SKL++I    +  GY P    +L   +E+   E++L  HSEKLA+AF
Sbjct: 661 VGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAF 720

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           GLI T     I+IVK + ICGDCH+  K  S++  R+I+LRD  RFH+F+ G CSC DYW
Sbjct: 721 GLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  370 bits (951), Expect = e-99,   Method: Compositional matrix adjust.
 Identities = 214/670 (31%), Positives = 369/670 (55%), Gaps = 57/670 (8%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISL------IHSSNSTKQLRQIHAQIILHNL 59
           +N + +      N+ ++    N + E  ++S          +   ++ R+I  Q+++ N 
Sbjct: 125 WNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQMLVKNE 184

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            +       L+S+   +  I+ A  +FD      +  +N L+ G           S F  
Sbjct: 185 IS----WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFD- 239

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLG 178
             R+ VR +++++  +    A   LLS  R L   L ++     D F    +   +VQ G
Sbjct: 240 --RMPVR-DKISWNIMITGYAQNGLLSEARRLFEELPIR-----DVFAWTAMVSGFVQNG 291

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
               A ++F+E PEKN+    + WN +I G  +   + KA ELF  MP +N +SW +++ 
Sbjct: 292 MLDEATRIFEEMPEKNE----VSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVT 347

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G+ + G++ +A  LF++MP++  +SW AMI+G++Q+G++E+AL +F +M   G   N   
Sbjct: 348 GYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSA 407

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +  ALS+CA++ ALE G ++H  +    F      G AL+ MY KCG+IE A  VF +  
Sbjct: 408 LACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDIT 467

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           EKD+++W  MI G A HG  ++A+  F+ M  +  +PD    + +L+AC ++G V   + 
Sbjct: 468 EKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLSACSHTGFVDKGME 526

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---------YQNS------------- 456
           +F+SM  +Y I  + KH+T +++LL R G+  +          Y ++             
Sbjct: 527 YFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIH 586

Query: 457 ------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                 + +  K+ +++P +   YVLLSN+YAA GRW++V  +R+ M+ + +KK PG+S+
Sbjct: 587 GDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSW 646

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           +E+    H F  G   H  A+ I++ LE++    ++ G++  T+ VLH+++EE KE  L 
Sbjct: 647 VEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLK 706

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
            HSEKLA+AFG++   PG  I+++K L +C DCH+ +K+ SKI+QR+I++RD+ RFH+F 
Sbjct: 707 YHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFS 766

Query: 627 DGTCSCRDYW 636
           +G+CSC DYW
Sbjct: 767 EGSCSCGDYW 776



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 165/340 (48%), Gaps = 22/340 (6%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +IS    +   D A  +F+    ++L  +NV++ G  +N +  +  + F  M    V   
Sbjct: 97  MISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV--- 153

Query: 129 RLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
            +++  +    A    +   R +   ++VK+ + ++      L   YVQ G+   A ++F
Sbjct: 154 -VSWNAMLSGFAQNGFVEEARKIFDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLF 207

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           D   +      ++ WN L+ G  +   L  A  LF  MP ++  SW  +I G+ + G L 
Sbjct: 208 DSKMDW----EIVSWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLS 263

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A  LFE++P + V +WTAM++GF QNG  ++A  +F +M +     N+ +  + ++   
Sbjct: 264 EARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFEEMPE----KNEVSWNAMIAGYV 319

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +   +E    + + +   +     +    +V  YA+CGNI+ A ++F E  ++D ++W A
Sbjct: 320 QSQQIEKARELFDQMPSRN----TSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAA 375

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           MI G A  G+ E+A+  F KM   G   + +     L++C
Sbjct: 376 MISGYAQSGQSEEALHLFIKMKRDGGILNRSALACALSSC 415



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 39/277 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y++ G+   A  VF+      +  S + +N +I+G         A ++F  MP +++ SW
Sbjct: 70  YMRKGQCESALSVFNGM----RRRSTVTYNAMISGYLSNNKFDCARKVFEKMPDRDLISW 125

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             ++ G+++ G+L  A  LF QMPEK VVSW AM++GF+QNG  E+A  +F QML     
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML----V 181

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHN------YISCN----DFGLKGAIGTA------- 336
            N+ +    LSA  + G +E   R+ +       +S N     +  K  +  A       
Sbjct: 182 KNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRM 241

Query: 337 ----------LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                     ++  YA+ G +  A  +F E   +D+  WTAM+ G   +G  ++A + F+
Sbjct: 242 PVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGMLDEATRIFE 301

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +M     E +   + A++     S Q++ A   FD M
Sbjct: 302 EM----PEKNEVSWNAMIAGYVQSQQIEKARELFDQM 334



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/191 (24%), Positives = 95/191 (49%), Gaps = 10/191 (5%)

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           ++ WN  I+   + G    A+ +F  M +++  ++ ++I G++       A ++FE+MP+
Sbjct: 60  IVKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYLSNNKFDCARKVFEKMPD 119

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + ++SW  M++G+ +NG    A A+F QM +  V     +  + LS  A+ G +E   ++
Sbjct: 120 RDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV----VSWNAMLSGFAQNGFVEEARKI 175

Query: 319 HNYISC-NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
            + +   N+    G     L+  Y + G IE A  +F    + ++++W  ++ G     R
Sbjct: 176 FDQMLVKNEISWNG-----LLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKR 230

Query: 378 YEQAIQYFKKM 388
            + A   F +M
Sbjct: 231 LDDARSLFDRM 241


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  370 bits (951), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 224/697 (32%), Positives = 371/697 (53%), Gaps = 76/697 (10%)

Query: 12   AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
            A+    ++ +S    + +T   ++S++   N  +  +QIH  ++   L     +   LI+
Sbjct: 890  AVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLIN 949

Query: 72   SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
                  S+  A ++F      +L  +N +I G A +   +  +  FV +LR  + P++ T
Sbjct: 950  MYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFT 1009

Query: 132  YPFVSKSVASLSL-LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
               V ++ +SL     L   +H   +K+GV  D+FV   L D+Y + GK   A  +F   
Sbjct: 1010 VASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLF--- 1066

Query: 191  PEKNKSESVLLWNVLINGCSKIGYLRKAVELF--------------------------GM 224
                    +  WN +++G    G   KA+ L+                          G+
Sbjct: 1067 -VNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQITLANAAKAAGGLVGL 1125

Query: 225  MPKKNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
               K + + V              ++D +++ G+++ A  +F ++P    V+WT MI+G 
Sbjct: 1126 KQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGC 1185

Query: 272  SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
             +NG+ E AL  +  M  + V+ +++T  + + AC+ + ALE G ++H      +     
Sbjct: 1186 VENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDP 1245

Query: 332  AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
             + T+LVDMYAKCGNIE A  +F  T    + +W AMI GLA HG  E+A+Q+F++M   
Sbjct: 1246 FVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSR 1305

Query: 392  GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--- 448
            G  PD   F+ +L+AC +SG V  A   F SM+  Y IEP ++H++ +V+ LSR G+   
Sbjct: 1306 GVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIRE 1365

Query: 449  -----DSQGYQNSQNSF--------------------TKLLQLKPKHPSSYVLLSNIYAA 483
                  S  ++ S + +                     KLL L+P   ++YVLLSN+YAA
Sbjct: 1366 AEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAA 1425

Query: 484  EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
              +W++VA  R +M++ ++KKDPG+S++++   VH F AG   H+    I++K+E IM  
Sbjct: 1426 ANQWENVASARNMMRKANVKKDPGFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKR 1485

Query: 542  AREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
             RE+GY+P T++ L +++EE KE +L  HSEKLA+A+GL++T P TT++++K L +CGDC
Sbjct: 1486 IREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDC 1545

Query: 601  HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            H+ +KY SK+ +RE+VLRD  RFH+F+ G CSC DYW
Sbjct: 1546 HNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGDYW 1582



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 40/386 (10%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLA 105
            ++ HA+I+         +T  LI+  S   S+  A  +FD    T ++L  +N ++   A
Sbjct: 646  KRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHA 705

Query: 106  ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            + +  +     F  + R  V   R T   V K     +  S    LH   VK G+++D F
Sbjct: 706  DKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVF 763

Query: 166  VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
            V   L ++Y + G+ R A  +FD    ++    V+LWNV++      G   +A+ LF   
Sbjct: 764  VAGALVNIYAKFGRIREARVLFDGMGLRD----VVLWNVMMKAYVDTGLEYEALLLFSEF 819

Query: 223  ---GMMP--------------KKNVASWVSLIDGFMRKGDLKKAG-ELF---EQMPEKGV 261
               G+ P              K+NV  W        +   LK  G +LF   +      V
Sbjct: 820  NRTGLRPDDVTLCTLARVVKSKQNVLEW--------QLKQLKAYGTKLFMYDDDDDGSDV 871

Query: 262  VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
            ++W   ++ F Q GE  +A+  F  M+++ V  +  T V  LS  A +  LE G ++H  
Sbjct: 872  IAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGI 931

Query: 322  ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
            +  +      ++G  L++MY K G++  A  VF +  E DL++W  MI G A+ G  E +
Sbjct: 932  VVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECS 991

Query: 382  IQYFKKMMYSGTEPDGTVFLAILTAC 407
            +  F  ++  G  PD     ++L AC
Sbjct: 992  VGMFVDLLRGGLLPDQFTVASVLRAC 1017



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 154/339 (45%), Gaps = 37/339 (10%)

Query: 79   IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
            I  A  +FD    +++ ++NV+++   +       +  F    R  +RP+ +T   +++ 
Sbjct: 778  IREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARV 837

Query: 139  VASLS---------LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            V S           L + G  L  +        D          ++Q G+T  A   F +
Sbjct: 838  VKSKQNVLEWQLKQLKAYGTKLF-MYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVD 896

Query: 190  TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGD 245
                  +   L + V+++  + +  L    ++ G++ +  +   VS    LI+ +++ G 
Sbjct: 897  MINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGS 956

Query: 246  LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
            + +A  +F QM E  +VSW  MI+G + +G  E ++ MF  +L  G+  + FTV S L A
Sbjct: 957  VSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRA 1016

Query: 306  CAKVG------------ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            C+ +G            A++AGV + +++S           T L+D+Y+K G +E A  +
Sbjct: 1017 CSSLGGGCHLATQIHACAMKAGVVLDSFVS-----------TTLIDVYSKSGKMEEAEFL 1065

Query: 354  FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
            F      DL +W AM+ G  + G + +A++ +  M  SG
Sbjct: 1066 FVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESG 1104



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 69/303 (22%), Positives = 117/303 (38%), Gaps = 68/303 (22%)

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           S L LG+  H  I+ SG   D F+  +L  MY + G    A K+FD TP+   S  ++ W
Sbjct: 640 SDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD--TSRDLVTW 697

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------------------ 232
           N +++  +     R    LF ++ +  V++                              
Sbjct: 698 NAILSAHADKA--RDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVK 755

Query: 233 ----WVSLIDG-----FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
               W   + G     + + G +++A  LF+ M  + VV W  M+  +   G   +AL +
Sbjct: 756 IGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLL 815

Query: 284 FFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           F +    G+R +D T+ + A    +K   LE  ++           LK A GT L  MY 
Sbjct: 816 FSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLK----------QLK-AYGTKLF-MYD 863

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
                        +    D++ W   +      G   +A+  F  M+ S    DG  F+ 
Sbjct: 864 D------------DDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVV 911

Query: 403 ILT 405
           +L+
Sbjct: 912 MLS 914


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 221/656 (33%), Positives = 349/656 (53%), Gaps = 73/656 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHK 77
           I  S +    I E+ ++S++H      Q++Q+HA I    L     +  +L+ + + L  
Sbjct: 27  IPFSVRQEQKILESRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDV 86

Query: 78  SID-YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
            +D Y   +F      N  ++  LIRG A    F   +  +  M R  + P   T+  + 
Sbjct: 87  PMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALL 146

Query: 137 KSVASLSLLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
           K+ ++   ++LGR +H   I+  G   D +V   L DMYV+ G      +VFDE      
Sbjct: 147 KACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDE------ 200

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
                                        M  ++V SW SLI  + + G+++ A ELF+ 
Sbjct: 201 -----------------------------MLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +P K +V+WTAM+ G++QN    +AL +F +M  AGV+ ++ T+V  +SACA++GA +  
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 316 VRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
             V +    + FG      +G+AL+DMYAKCG++E A  VF   +E+++ ++++MI G A
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFA 351

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
           +HG    A++ F +M+ +  +P+   F+ +LTAC ++G V+     F  M   + + PS 
Sbjct: 352 MHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSE 411

Query: 434 KHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQ 465
            H+  +V+LL R G+  +                                +Q + + L +
Sbjct: 412 DHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFE 471

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAG- 523
           L+P    +Y+LLSNIYA+ GRW DV++VR LM+ + +KK+PG S++E   G +H F AG 
Sbjct: 472 LEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGD 531

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQ 581
             H  ++EI   LED++   +  GY P    V ++I  EEK+  L  HSEKLALAFGL+ 
Sbjct: 532 MSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLT 591

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           T  G TI+IVK L IC DCHS+M  AS+I+ REIV+RD  RFH+F+DG CSC ++W
Sbjct: 592 TNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  370 bits (950), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 223/653 (34%), Positives = 345/653 (52%), Gaps = 78/653 (11%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDY 81
           K    I +   ISL++S  + K+++QIHAQ+++  +  +     Q +++ +LH +  +DY
Sbjct: 2   KSVKRIAKHPTISLLNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALHNTTNLDY 61

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENS------HFQSCISHFVFMLRLSVRPNRLTYPFV 135
           A  + +H     L   N +IR  +++S      HF + I H       ++ P+  T+ F+
Sbjct: 62  ANKLLNHNNNPTLFTLNSMIRAYSKSSTPSKSFHFYANILH---SNNNNLSPDNYTFTFL 118

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
            ++ A L     G  +H  ++K G E D  V+  L  MY +LG       VFD   E + 
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPD- 177

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
              ++    ++N C+K G                               D+  A ++F++
Sbjct: 178 ---LVTQTAMLNACAKCG-------------------------------DIDFARKMFDE 203

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MPE+  V+W AMI G++Q G + +AL +F  M   GV+ N+ ++V  LSAC  +  L+ G
Sbjct: 204 MPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKLNEVSMVLVLSACTHLQVLDHG 263

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             VH Y+      +   +GTALVDMYAKCGN++ A  VF   KE+++ TW++ I GLA++
Sbjct: 264 RWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLAMN 323

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G  E+++  F  M   G +P+G  F+++L  C   G V+     FDSMR  Y I P ++H
Sbjct: 324 GFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEH 383

Query: 436 HTVVVNLLSRVGQDSQG-------------------------YQN---SQNSFTKLLQLK 467
           + ++V++  R G+  +                          Y+N    + +  K+++L+
Sbjct: 384 YGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVELE 443

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
            K+  +YVLLSNIYA    W+ V+ +R  M+ + +KK PG S IEV+G VH F  G   H
Sbjct: 444 DKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDKSH 503

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTP 584
               EI  KLE+I    R  GY+  T  VL +I+EE KE+AL  HSEK+A+AFGLI    
Sbjct: 504 PRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLISLKG 563

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
              I++V  L IC DCH++ K  SKI  REI++RD  RFH+FKDG CSC+DYW
Sbjct: 564 VVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 213/633 (33%), Positives = 344/633 (54%), Gaps = 79/633 (12%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD    +N+  + ++I    +    +  +  F+ M+     P+R T   V  +
Sbjct: 95  LESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNK 195
            A + LLSLGR  HCL++KSG++ D  V   L DMY +    G    A KVFD  P  N 
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHN- 213

Query: 196 SESVLLWNVLINGCSKIGYL-RKAVELFGMMPKKNVAS------------------WV-- 234
              V+ W  +I G  + G   R+A+ELF  M +  V                    W+  
Sbjct: 214 ---VMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270

Query: 235 -------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                              SLI  + R G+++ A + F+ + EK +VS+  ++N ++++ 
Sbjct: 271 QVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSL 330

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
            +E+A  +F ++  AG   N FT  S LS  + +GA+  G ++H+ I  + F     I  
Sbjct: 331 NSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICN 390

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+ MY++CGNIEAA  VF E  + ++++WT+MI G A HG   +A++ F KM+ +G  P
Sbjct: 391 ALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSP 450

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ- 454
           +   ++A+L+AC + G +   L  F SM+ ++ I P ++H+  VV+LL R G   +  + 
Sbjct: 451 NEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMEL 510

Query: 455 -NS--------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
            NS                          +++   +L+  P  P++Y+LLSN++A+ G+W
Sbjct: 511 VNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQW 570

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
           ++VA +R  M+ R++ K+ G S+IEV   VH+F  G   H  A+EI+ +L+ +    +E 
Sbjct: 571 EEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKEL 630

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY+P T++VLH+++EE KE+ L  HSEK+A+A+G I T+    I++ K L +CGDCH+  
Sbjct: 631 GYIPSTDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAF 690

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           KY S + ++EIVLRD  RFH+FKDGTCSC DYW
Sbjct: 691 KYFSIVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 172/360 (47%), Gaps = 49/360 (13%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           ++L  ++ LI   A N      IS F  ML     PN   +  V ++ ++   +SLG+ +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
              ++K+G  E D  V   L DM+V+  G    A+KVFD  P++N    V+ W ++I   
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRN----VVTWTLMITRF 120

Query: 210 SKIGYLRKAVELF------GMMPKK---------------------------------NV 230
            ++G+ R AV+LF      G +P +                                 +V
Sbjct: 121 QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDV 180

Query: 231 ASWVSLIDGFMR---KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQ 286
               SL+D + +    G +  A ++F++MP   V+SWTA+I G+ Q+G  ++ A+ +F +
Sbjct: 181 CVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLE 240

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M+   V+ N FT  S L ACA +  +  G +V+  +          +G +L+ MY++CGN
Sbjct: 241 MVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGN 300

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +E A   F    EK+L+++  ++   A     E+A + F ++  +GT  +   F ++L+ 
Sbjct: 301 MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 30/278 (10%)

Query: 221 LFGMMPK-----KNVASWVSLIDGFMR-KGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           +FG + K      +V    +LID F++  GDL+ A ++F++MP++ VV+WT MI  F Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G +  A+ +F  M+ +G   + FT+   +SACA++G L  G + H  +  +   L   +G
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 335 TALVDMYAKC---GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE-QAIQYFKKMMY 390
            +LVDMYAKC   G+++ A  VF      ++++WTA+I G    G  + +AI+ F +M+ 
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 391 SGTEPDGTVFLAILTAC------WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
              +P+   F ++L AC      W   QV           +   ++  +     V N L 
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQV-----------YALVVKMRLASINCVGNSLI 292

Query: 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
            +       +N++ +F  L +   K+  SY  + N YA
Sbjct: 293 SMYSRCGNMENARKAFDVLFE---KNLVSYNTIVNAYA 327



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 84/164 (51%), Gaps = 2/164 (1%)

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++ +VSW+A+I+ ++ N +A +A++ FF ML+ G   N++       AC+    +  G  
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 318 VHNY-ISCNDFGLKGAIGTALVDMYAKC-GNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           +  + +    F     +G AL+DM+ K  G++E+A  VF    +++++TWT MI      
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           G    A+  F  M+ SG  PD      +++AC   G + L   F
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQF 167



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 147/332 (44%), Gaps = 17/332 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            Q++A ++   L + + +   LIS  S   +++ A   FD    KNL  +N ++   A++
Sbjct: 270 EQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKS 329

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            + +     F  +       N  T+  +    +S+  +  G  +H  I+KSG + +  + 
Sbjct: 330 LNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHIC 389

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G    AF+VF+E  + N    V+ W  +I G +K G+  +A+E F  M +
Sbjct: 390 NALISMYSRCGNIEAAFQVFNEMGDGN----VISWTSMITGFAKHGFATRALETFHKMLE 445

Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVS----WTAMINGFSQNGEAE 278
             V+    ++++++      G + +  + F+ M  E G+V     +  +++   ++G  E
Sbjct: 446 AGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLE 505

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ +   M     +A+   + + L AC   G ++ G      I   D     A    L 
Sbjct: 506 EAMELVNSM---PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAY-ILLS 561

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           +++A  G  E  + +  + KE++L       W
Sbjct: 562 NLHASAGQWEEVAEIRKKMKERNLTKEAGCSW 593


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  370 bits (949), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 235/718 (32%), Positives = 354/718 (49%), Gaps = 100/718 (13%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII-------- 55
           H+  R+     P   + +   PS         +L       + + Q+HA ++        
Sbjct: 43  HLRTRMAATALPAARLPAPGMPSPARQTPRRAAL-------RDVPQLHATLLKSGAMTTS 95

Query: 56  ---LHNLFASSRITTQLISSASLHKSIDYALSIF--DHFTPKNLHIFNVLIRGLAENSHF 110
               H+L  ++ +     SSA L     YA+ +F      P++   +N+LIR      H 
Sbjct: 96  PDSFHSLLEAAALPAPATSSAHL----SYAIRLFRLGPHPPRSARSYNILIRSFLRAGHP 151

Query: 111 QSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
           +  +  FV ML   +V P++ T     KS + +  LS+GRG+     K G   D FV   
Sbjct: 152 EDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNS 211

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------- 222
           L  MY   G    A  +F     K     V+ WN +I G  K G  ++ VE+F       
Sbjct: 212 LIHMYASCGDVVAAHVLFHTVQVKG----VIAWNAMIAGYVKNGDWKEVVEMFKGMLEVR 267

Query: 223 ---------------GMMPKKNVASWVS-----------------LIDGFMRKGDLKKAG 250
                          G +   N+  W++                 L+D + + G+L KA 
Sbjct: 268 APFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKAR 327

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF++M  + VV+W+AMI+G++Q+    +ALA+F +M    V  ND T+VS LSACA +G
Sbjct: 328 RLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLG 387

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           ALE G  VH+YI   D  L   +GTALVD YAKCG I+ A   F     ++  TWTA+I 
Sbjct: 388 ALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNTWTWTALIK 447

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G+A +GR  +A++ F  M+ +  EP    F+ +L AC +   V+     F SM  DY I 
Sbjct: 448 GMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHFTSMTQDYGIC 507

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTK 462
           P ++H+  +V+LL R G   + YQ  +N                            +  +
Sbjct: 508 PRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKNVEIGEEALKQ 567

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF-- 520
           ++ L P H  +Y+LLSN YA+ G+WK+ A VR  M+ + ++K PG S IE+ G +  F  
Sbjct: 568 IVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIELEGTIFEFFA 627

Query: 521 EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGL 579
           E   H    EI+ K+ +++   +  GY+P T     ++ E EK+ ++  HSEKLA+AFGL
Sbjct: 628 EDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHHSEKLAIAFGL 687

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +++ PG TI++ K L +C DCHS  K  SK+  REI++RD  RFH+FKDG CSC DYW
Sbjct: 688 MKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDGLCSCNDYW 745


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  369 bits (948), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 204/549 (37%), Positives = 311/549 (56%), Gaps = 67/549 (12%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   V+PN+ T   V K+ AS++ L  G+  H  I+K G E D  V+  L  MY     
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMY----- 55

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
                                         ++ G L  A  +F  M +++  +W ++I G
Sbjct: 56  ------------------------------ARCGSLEDAGHVFDKMSERSTRTWNAMITG 85

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
             +  D+KKA +LF +M E+ VVSWTA+I G++QNG  +++L +F QM   G++++ F +
Sbjct: 86  HAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIM 145

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            S LSACA + ALE G + H Y+  + F L   +G+ALVDMYAK G++E A  VF +  +
Sbjct: 146 GSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQ 205

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           ++ ++W ++I G A HGR   A+  F++M+ +G +P+   F+ +L+AC ++G V     +
Sbjct: 206 RNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGY 265

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN---------------------- 455
           F+ M  +Y I P V H+T +++LL R G   +++ + N                      
Sbjct: 266 FNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHG 325

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               ++     LL ++ +    YVLLSNIYAA G+W D A+VR LM+ R + K PG+S+I
Sbjct: 326 NTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVMKQPGYSWI 385

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGC 568
           EV   +H F AG   H   KEIH  LE +    +  GY+P   +VL ++++ EKE +L  
Sbjct: 386 EVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYVPNKNFVLQDVEDDEKELSLSH 445

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLA+AFG+I T PGTTI++ K L +CGDCH+++K+ S    R+IV+RD  RFH+FKD
Sbjct: 446 HSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFISLNFTRKIVVRDANRFHHFKD 505

Query: 628 GTCSCRDYW 636
           G CSC DYW
Sbjct: 506 GRCSCGDYW 514



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/319 (25%), Positives = 145/319 (45%), Gaps = 19/319 (5%)

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
           S+R    +I+  + ++ +  AL +F   + +++  +  +I G A+N +    ++ F  M 
Sbjct: 75  STRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMR 134

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
           +  ++ +R     V  + A L+ L LGR  H  +V+SG   D  V   L DMY + G   
Sbjct: 135 KTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSME 194

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLI 237
            A +VFD+ P++N+    + WN +I GC++ G    AV LF  M     K N  S+V ++
Sbjct: 195 DACQVFDKMPQRNE----VSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVL 250

Query: 238 DGFMRKGDLKKAGELFEQMPEK-GVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGV 292
                 G + +    F  M +  G+V     +T MI+   + G  ++A       ++   
Sbjct: 251 SACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAE----NFINGMP 306

Query: 293 RANDFTVVSA-LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
              D +V  A L AC   G  E   R+  ++   +  + G I   L ++YA  G  + A+
Sbjct: 307 VEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAG-IYVLLSNIYAAAGQWDDAA 365

Query: 352 LVFGETKEKDLLTWTAMIW 370
            V    K++ ++      W
Sbjct: 366 KVRKLMKDRGVMKQPGYSW 384



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 9/220 (4%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ HA ++         + + L+   +   S++ A  +FD    +N   +N +I G A++
Sbjct: 162 RQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQH 221

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFV 166
                 +  F  ML+  ++PN +++  V  + +   L++ GRG   L+ ++ G+  D   
Sbjct: 222 GRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSH 281

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL----RKAVELF 222
              + D+  + G    A    +  P +     V +W  L+  C   G      R A  L 
Sbjct: 282 YTCMIDLLGRAGCLDEAENFINGMPVE---PDVSVWGALLGACRIHGNTELAKRIAEHLL 338

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           G M  +    +V L + +   G    A ++ + M ++GV+
Sbjct: 339 G-MEVQIAGIYVLLSNIYAAAGQWDDAAKVRKLMKDRGVM 377


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  369 bits (947), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/506 (36%), Positives = 297/506 (58%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   Y Q G    A +VFD  PE+N     + WN ++    +   + +A ELF
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 309

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
            MMP +NVASW +++ G+ + G L++A  +F+ MP+K  VSW AM+  +SQ G +E+ L 
Sbjct: 310 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G   N       LS CA + ALE G+++H  +    +G+   +G AL+ MY 
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCGN+E A   F E +E+D+++W  MI G A HG  ++A++ F  M  + T+PD    + 
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC +SG V+  +++F SM  D+ +    +H+T +++LL R G+ ++ +         
Sbjct: 490 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              +  +++  K+ +L+P++   YVLLSNIYA+ G+W+D  ++R
Sbjct: 550 PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMR 609

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            +M+ R +KK PG+S+IEV   VH F AG   H   ++I++ LED+    ++ GY+  T+
Sbjct: 610 VMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATD 669

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEKE  L  HSEKLA+A+G++   PG  I+++K L +CGDCH+  KY S I 
Sbjct: 670 MVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIE 729

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F+ G+CSC DYW
Sbjct: 730 GRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 167/346 (48%), Gaps = 20/346 (5%)

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
           S+     +++  S +  +  A S+F      + + +N L+  LA +S        F  M 
Sbjct: 68  STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM- 126

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
              VR + +TY  +  S A+  L+SL R    L      E DA     +   YV+ G+  
Sbjct: 127 --PVR-DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVE 179

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
            A  +F+   E +    V+ WN L++G  + G + +A ELF  MP ++V SW  ++ G+ 
Sbjct: 180 EARGLFNSRTEWD----VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYA 235

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           R+GD+ +A  LF+  P + V +WTA+++G++QNG  E+A  +F    DA    N  +  +
Sbjct: 236 RRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNA 291

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            ++A  +   ++    + N + C +     A    ++  YA+ G +E A  VF    +KD
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            ++W AM+   +  G  E+ +Q F +M   G   + + F  +L+ C
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 100/246 (40%), Gaps = 43/246 (17%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           +++ G+   A ++F   P ++ S     +N ++ G S  G L  A  LF  +P+ +  S+
Sbjct: 48  HMRAGRVADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSY 103

Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
            +L+        L  A  LF++MP                               EK  V
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV 163

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW  M+  + +NG  E+A  +F    +  V     +  + +S   + G +     + + +
Sbjct: 164 SWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRM 219

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              D          +V  YA+ G++  A  +F     +D+ TWTA++ G A +G  E+A 
Sbjct: 220 PGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275

Query: 383 QYFKKM 388
           + F  M
Sbjct: 276 RVFDAM 281



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I   MR G +  A  LF  MP +   ++ AM+ G+S NG    A ++F     A  R ++
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIPRPDN 100

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           ++  + L A A   +L     + + +   D          ++  +A  G +  A   F  
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRD----SVTYNVMISSHANHGLVSLARHYFDL 156

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             EKD ++W  M+     +GR E+A   F     S TE D   + A+++     G++  A
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 417 LNFFDSM 423
              FD M
Sbjct: 213 RELFDRM 219


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 187/506 (36%), Positives = 297/506 (58%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   Y Q G    A +VFD  PE+N     + WN ++    +   + +A ELF
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 309

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
            MMP +NVASW +++ G+ + G L++A  +F+ MP+K  VSW AM+  +SQ G +E+ L 
Sbjct: 310 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G   N       LS CA + ALE G+++H  +    +G+   +G AL+ MY 
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCGN+E A   F E +E+D+++W  MI G A HG  ++A++ F  M  + T+PD    + 
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC +SG V+  +++F SM  D+ +    +H+T +++LL R G+ ++ +         
Sbjct: 490 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              +  +++  K+ +L+P++   YVLLSNIYA+ G+W+D  ++R
Sbjct: 550 PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMR 609

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            +M+ R +KK PG+S+IEV   VH F AG   H   ++I++ LED+    ++ GY+  T+
Sbjct: 610 VMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATD 669

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEKE  L  HSEKLA+A+G++   PG  I+++K L +CGDCH+  KY S I 
Sbjct: 670 MVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIE 729

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F+ G+CSC DYW
Sbjct: 730 GRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 166/346 (47%), Gaps = 20/346 (5%)

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
           S+     +++  S +  +  A S+F      + + +N L+  LA +S        F  M 
Sbjct: 68  STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM- 126

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
              VR + +TY  +  S A+  L+SL R    L      E DA     +   YV+ G+  
Sbjct: 127 --PVR-DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVE 179

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
            A  +F+   E +     + WN L++G  + G + +A ELF  MP ++V SW  ++ G+ 
Sbjct: 180 EARGLFNSRTEWD----AISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYA 235

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           R+GD+ +A  LF+  P + V +WTA+++G++QNG  E+A  +F    DA    N  +  +
Sbjct: 236 RRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNA 291

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            ++A  +   ++    + N + C +     A    ++  YA+ G +E A  VF    +KD
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            ++W AM+   +  G  E+ +Q F +M   G   + + F  +L+ C
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 101/246 (41%), Gaps = 43/246 (17%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           +++ G+   A ++F   P ++ S     +N ++ G S  G L  A  LF  +P+ +  S+
Sbjct: 48  HMRAGRVADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSY 103

Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
            +L+        L  A  LF++MP                               EK  V
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV 163

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW  M+  + +NG  E+A  +F    ++    +  +  + +S   + G +     + + +
Sbjct: 164 SWNGMLAAYVRNGRVEEARGLF----NSRTEWDAISWNALMSGYVQWGKMSEARELFDRM 219

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              D          +V  YA+ G++  A  +F     +D+ TWTA++ G A +G  E+A 
Sbjct: 220 PGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275

Query: 383 QYFKKM 388
           + F  M
Sbjct: 276 RVFDAM 281



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I   MR G +  A  LF  MP +   ++ AM+ G+S NG    A ++F     A  R ++
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIPRPDN 100

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           ++  + L A A   +L     + + +   D          ++  +A  G +  A   F  
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRD----SVTYNVMISSHANHGLVSLARHYFDL 156

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             EKD ++W  M+     +GR E+A   F     S TE D   + A+++     G++  A
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDAISWNALMSGYVQWGKMSEA 212

Query: 417 LNFFDSM 423
              FD M
Sbjct: 213 RELFDRM 219


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  369 bits (946), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 223/656 (33%), Positives = 348/656 (53%), Gaps = 71/656 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           QIHA ++         +   LIS  S    +  A  +FD+   K+   +N +I G   N 
Sbjct: 224 QIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVING 283

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                   F  M     +P   T+  V KS ASL  L L R LHC  +KSG+  +  V  
Sbjct: 284 QDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNV-- 341

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L  + V L K +     F      +  +SV+ W  +I+G  + G   +AV LF +M ++
Sbjct: 342 -LTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRRE 400

Query: 229 NV---------------ASWVS--------------------LIDGFMRKGDLKKAGELF 253
            V               A ++S                    L+D F++ G++  A ++F
Sbjct: 401 GVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVF 460

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC-AKVGAL 312
           E +  K V++W+AM+ G++Q GE E+A  +F Q+   G++ N+FT  S ++AC A   ++
Sbjct: 461 ELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASV 520

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           E G + H Y           + ++LV +YAK GNIE+A  +F   KE+DL++W +MI G 
Sbjct: 521 EQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGY 580

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A HG+ ++A++ F++M     E D   F+ +++AC ++G V    N+F+ M  D+ I P+
Sbjct: 581 AQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPT 640

Query: 433 VKHHTVVVNLLSRVGQ-------------------------DSQGYQN---SQNSFTKLL 464
           ++H++ +++L SR G                           S+ ++N    + +  K++
Sbjct: 641 MEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKII 700

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
            L+P+H ++YVLLSNIYAA G W +   VR LM +R +KK+PG+S+IEV    + F AG 
Sbjct: 701 SLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGD 760

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQ 581
             H L+  I+SKL ++    R+ GY P T +V H+I+ E+KE  L  HSE+LA+AFGLI 
Sbjct: 761 LSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIA 820

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           T P   ++IVK L +CGDCHS +K  S + +R IV+RD+ RFH+FK G CSC DYW
Sbjct: 821 TLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 174/399 (43%), Gaps = 48/399 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H Q +   L     +   L+   +   ++     +FD    +++  +N L+ G + N 
Sbjct: 123 QVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNR 182

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                   F  M     RP+  T   V  ++A+   +++G  +H L+VK G E +  V  
Sbjct: 183 FNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCN 242

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM--- 225
            L  M  + G  R A  VFD    K+     + WN +I G    G   +A E F  M   
Sbjct: 243 SLISMLSKSGMLRDARVVFDNMENKDS----VSWNSMIAGHVINGQDLEAFETFNNMQLA 298

Query: 226 -PKKNVASWVSLID--------GFMRK---------------------------GDLKKA 249
             K   A++ S+I         G +R                             ++  A
Sbjct: 299 GAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDA 358

Query: 250 GELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
             LF  M   + VVSWTAMI+G+ QNG+ ++A+ +F  M   GV+ N FT  + L+    
Sbjct: 359 FSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHA 418

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           V   E    +H  +   ++    ++GTAL+D + K GNI  A  VF   + KD++ W+AM
Sbjct: 419 VFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAM 474

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + G A  G  E+A + F ++   G +P+   F +I+ AC
Sbjct: 475 LAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINAC 513



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 148/365 (40%), Gaps = 44/365 (12%)

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           +A  +FD    ++L   N L+   +     Q  +  FV + R  + P+  T   V    A
Sbjct: 54  FAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCA 113

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
                ++G  +HC  VK G+ +   V   L DMY + G  R   +VFDE  +++    V+
Sbjct: 114 GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD----VV 169

Query: 201 LWNVLINGCSKIGYLRKAVELFGMM------PKKNVASWV-------------------- 234
            WN L+ G S   +  +  ELF +M      P     S V                    
Sbjct: 170 SWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALV 229

Query: 235 -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                        SLI    + G L+ A  +F+ M  K  VSW +MI G   NG+  +A 
Sbjct: 230 VKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAF 289

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
             F  M  AG +    T  S + +CA +  L     +H     +       + TAL+   
Sbjct: 290 ETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVAL 349

Query: 342 AKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
            KC  I+ A  +F      + +++WTAMI G   +G  +QA+  F  M   G +P+   +
Sbjct: 350 TKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTY 409

Query: 401 LAILT 405
             ILT
Sbjct: 410 STILT 414



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 88/180 (48%), Gaps = 4/180 (2%)

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
            +R  D + A +LF+Q P + +     ++  +S+  + ++AL +F  +  +G+  + +T+
Sbjct: 46  LLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTM 105

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGET 357
              LS CA  G+    V    +  C   GL    ++G +LVDMY K GN+     VF E 
Sbjct: 106 SCVLSVCA--GSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEM 163

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            ++D+++W +++ G + +   +Q  + F  M   G  PD      ++ A    G V + +
Sbjct: 164 GDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGM 223


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 214/649 (32%), Positives = 339/649 (52%), Gaps = 47/649 (7%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIIL-HNLFASSRITTQLISSASLHKSIDYALSIFD 87
           +TE     ++  +   K L+++H++I + H+L ++  +  +L+ + ++         IFD
Sbjct: 36  LTENLCGQILDKNPDIKYLKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFD 95

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               KN+  FNV+IR    N  +   +  F  M    + P+  TYP V K+ +    L +
Sbjct: 96  EIPKKNVVFFNVMIRSYVNNHLYSDALLVFKNMAGHGIDPDHYTYPCVLKASSGSEDLWV 155

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G  +H  +V+ G++ + FV   L  MY + G    A +V D+ P ++    V+ WN L+ 
Sbjct: 156 GMQIHAAVVRVGLDLNVFVGNGLISMYGKCGCLVEACRVLDQMPCRD----VVSWNSLVA 211

Query: 208 GCSKIGYLRKAVE------LFGMMPKKNVASWVSLIDGFMRK--GDLKKAGELFEQMPEK 259
           GC++ G    A+E      L G+ P  +  +  SL+         ++    E+F ++  K
Sbjct: 212 GCARNGQFDDALEVCKEMELLGLKP--DAGTMASLLPAVTNTCLDNVSFVKEMFMKLANK 269

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            +VSW  MI  +  N    +A+ +F QM D  V  +  ++ S L AC  + AL  G R+H
Sbjct: 270 SLVSWNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIH 329

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            Y+          +  AL+DMYAKCG +E A  VF + K +D+++WT+MI    ++G+  
Sbjct: 330 EYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGR 389

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
            A+  F +M   G  PD   F+++L+AC ++G +     +F  M  +  I P ++H   +
Sbjct: 390 DAVSLFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCM 449

Query: 440 VNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHP 471
           V+LL R GQ  + Y   +                             +  +L QL P+  
Sbjct: 450 VDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQS 509

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             YVLLSNIYA  GRW+DV  VR++M+ + IKK PG S  E++  VH F AG   H  +K
Sbjct: 510 GYYVLLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSK 569

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTI 588
           +I+ +L+  +   +E GY+P T+  LH+++EE +E  L  HSEKLA+AF ++ T PG+ I
Sbjct: 570 QIYEELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPI 629

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I K L +CGDCH   K  SKI  REI +RDT RFH+F +G CSC DYW
Sbjct: 630 RITKNLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 222/676 (32%), Positives = 360/676 (53%), Gaps = 78/676 (11%)

Query: 34   IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
            +++ +  ++  +  +Q+H   +   L +   +   L++  S      +A  +F+     +
Sbjct: 910  VLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 969

Query: 94   LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLH 152
            L  +N +I   A++S  +  ++ F+ +L   ++P+  T   V ++ +SL   L++ R +H
Sbjct: 970  LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIH 1029

Query: 153  CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE-SVLLWNVLINGCSK 211
               +K+G   D+FV   L D+Y + GK   A  +F     +NK +  +  WN ++ G   
Sbjct: 1030 VHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLF-----QNKDDLDLACWNAMMFGYII 1084

Query: 212  IGYLRKAVELFGMMPKKNVAS--------------------------------------- 232
                +KA+ELF ++ K    S                                       
Sbjct: 1085 GNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHV 1144

Query: 233  WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
               ++D +++ GD+  AG +F  +     V+WT+MI+G   NG  ++AL ++ +M  + V
Sbjct: 1145 NSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRV 1204

Query: 293  RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
              +++T  + + A + V ALE G ++H  +   D      +GT+LVDMYAKCGNIE A  
Sbjct: 1205 MPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYR 1264

Query: 353  VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
            +F +   +++  W AM+ GLA HG  E+A+  FK M   G EPD   F+ IL+AC ++G 
Sbjct: 1265 LFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGL 1324

Query: 413  VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDS-------------------- 450
               A  +  SM  DY IEP ++H++ +V+ L R G  Q++                    
Sbjct: 1325 TSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALL 1384

Query: 451  -----QG-YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                 QG  +  +    +L  L+P   ++YVLLSNIYAA  RW DV   R +M+R+++KK
Sbjct: 1385 GACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKK 1444

Query: 505  DPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EE 561
            DPG+S+I+V   +H F  +   H  A  I+ K+E++M   RE GY+P TE+VL +++ EE
Sbjct: 1445 DPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEE 1504

Query: 562  KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
            KE +L  HSEKLA+A+GLI T   TTI+++K L +CGDCH+ +KY SK+ +REIVLRD  
Sbjct: 1505 KERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDAN 1564

Query: 621  RFHYFKDGTCSCRDYW 636
            RFH+F+DG CSC DYW
Sbjct: 1565 RFHHFRDGVCSCGDYW 1580



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 179/394 (45%), Gaps = 28/394 (7%)

Query: 37   LIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
            L+ ++ ST  L   +  HA+I++        ++  L++  S   S+  A  +FD    ++
Sbjct: 627  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 94   LHIFNVLIRGLA-----ENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSL 147
            L  +N ++   A      + + Q  + H   +LR S+    R+T   V K   +   L  
Sbjct: 687  LVTWNAILGAYAASVDSNDGNAQEGL-HLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 148  GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
              G+H   +K G+E+D FV   L ++Y + G+ R A  +FD   E++    V+LWN+++ 
Sbjct: 746  AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERD----VVLWNMMLK 801

Query: 208  GCSKIGYLRKAVELF------GMMPKK-------NVASWVSLIDGFMRKGDLKK-AGELF 253
            G  ++G  ++A +LF      G+ P +       N  S V+  +G      ++  A +L 
Sbjct: 802  GYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLS 861

Query: 254  EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
                   V  W   ++     G+   A+  F  M    +  +  T++  L+A A    LE
Sbjct: 862  LSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLE 921

Query: 314  AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
             G +VH     +      ++  +LV+MY+K G    A  VF + K  DL++W +MI   A
Sbjct: 922  LGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCA 981

Query: 374  IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                 E+++  F  +++ G +PD     ++L AC
Sbjct: 982  QSSLEEESVNLFIDLLHEGLKPDHFTLASVLRAC 1015



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 142/334 (42%), Gaps = 11/334 (3%)

Query: 85   IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS- 143
            +FD    +++ ++N++++G  +    +     F    R  +RP+  +   +   V+ ++ 
Sbjct: 784  LFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNW 843

Query: 144  -----LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
                 L    +     +  S    D F         +  G   GA + F      N    
Sbjct: 844  DEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYD 903

Query: 199  VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFE 254
             +   V++   +    L    ++ G+  K  + S VS    L++ + + G    A E+F 
Sbjct: 904  AVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFN 963

Query: 255  QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGALE 313
             M    ++SW +MI+  +Q+   E+++ +F  +L  G++ + FT+ S L AC+  +  L 
Sbjct: 964  DMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLN 1023

Query: 314  AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
               ++H +           + T L+D+Y+K G +E A  +F    + DL  W AM++G  
Sbjct: 1024 ISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYI 1083

Query: 374  IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            I    ++A++ F  +  SG + D         AC
Sbjct: 1084 IGNDGKKALELFSLIHKSGEKSDQITLATAAKAC 1117


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 187/506 (36%), Positives = 297/506 (58%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   Y Q G    A +VFD  PE+N     + WN ++    +   + +A ELF
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 184

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
            MMP +NVASW +++ G+ + G L++A  +F+ MP+K  VSW AM+  +SQ G +E+ L 
Sbjct: 185 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 244

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G   N       LS CA + ALE G+++H  +    +G+   +G AL+ MY 
Sbjct: 245 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 304

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCGN+E A   F E +E+D+++W  MI G A HG  ++A++ F  M  + T+PD    + 
Sbjct: 305 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 364

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC +SG V+  +++F SM  D+ +    +H+T +++LL R G+ ++ +         
Sbjct: 365 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 424

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              +  +++  K+ +L+P++   YVLLSNIYA+ G+W+D  ++R
Sbjct: 425 PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMR 484

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            +M+ R +KK PG+S+IEV   VH F AG   H   ++I++ LED+    ++ GY+  T+
Sbjct: 485 VMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATD 544

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEKE  L  HSEKLA+A+G++   PG  I+++K L +CGDCH+  KY S I 
Sbjct: 545 MVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIE 604

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F+ G+CSC DYW
Sbjct: 605 GRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 176/378 (46%), Gaps = 24/378 (6%)

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           + +TY  +  S A+  L+SL R    L      E DA     +   YV+ G+   A  +F
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           +   E +    V+ WN L++G  + G + +A ELF  MP ++V SW  ++ G+ R+GD+ 
Sbjct: 61  NSRTEWD----VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMV 116

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A  LF+  P + V +WTA+++G++QNG  E+A  +F    DA    N  +  + ++A  
Sbjct: 117 EARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNAMVAAYI 172

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +   ++    + N + C +     A    ++  YA+ G +E A  VF    +KD ++W A
Sbjct: 173 QRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAA 228

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           M+   +  G  E+ +Q F +M   G   + + F  +L+ C     ++  +     +    
Sbjct: 229 MLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRL---- 284

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
            I         V N L  +       ++++N+F    +++ +   S+  +   YA  G  
Sbjct: 285 -IRAGYGVGCFVGNALLAMYFKCGNMEDARNAFE---EMEERDVVSWNTMIAGYARHGFG 340

Query: 488 KDVARVRTLMQRRSIKKD 505
           K+   +  +M+  S K D
Sbjct: 341 KEALEIFDMMRTTSTKPD 358



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 97/219 (44%), Gaps = 6/219 (2%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT- 67
           + +  A    ++ + +  + + E + +S      +  Q R +     L N+     + + 
Sbjct: 136 VVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW 195

Query: 68  -QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             +++  +    ++ A ++FD    K+   +  ++   ++    +  +  F+ M R    
Sbjct: 196 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 255

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            NR  +  V  + A ++ L  G  LH  ++++G     FV   L  MY + G    A   
Sbjct: 256 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNA 315

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           F+E  E++    V+ WN +I G ++ G+ ++A+E+F MM
Sbjct: 316 FEEMEERD----VVSWNTMIAGYARHGFGKEALEIFDMM 350



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           MP ++  ++  +I      G +  A   F+  PEK  VSW  M+  + +NG  E+A  +F
Sbjct: 1   MPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLF 60

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
               +  V     +  + +S   + G +     + + +   D          +V  YA+ 
Sbjct: 61  NSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRMPGRDV----VSWNIMVSGYARR 112

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           G++  A  +F     +D+ TWTA++ G A +G  E+A + F  M
Sbjct: 113 GDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM 156


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 234/666 (35%), Positives = 348/666 (52%), Gaps = 108/666 (16%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLI 101
           + LR IHAQ+I   L  ++   ++LI    L    D   YA+S+F+     NL I+N + 
Sbjct: 4   QSLRMIHAQMIKTGLHNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMF 63

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
           RG A +S   S +  +V M+ L + PN  T+PF+ KS A       G+ +H  ++K G +
Sbjct: 64  RGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCD 123

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------------------- 194
            D +V   L  MYVQ G+   A KVFDE+P ++                           
Sbjct: 124 LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEI 183

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------- 231
             + V+ WN +I+G ++ G  ++A+ELF  M K NV                        
Sbjct: 184 PVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGR 243

Query: 232 ---SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
              SW+             +LID + + G+L+ A  LFE +P K V+SW  +I G++   
Sbjct: 244 QVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMN 303

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---- 331
             ++AL +F +ML +G   ND T++S L ACA +GA++ G  +H YI   D  LKG    
Sbjct: 304 LYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI---DKRLKGVANA 360

Query: 332 -AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
            ++ T+L+DMYAKCG+IEAA  VF     K L +W AMI+G A+HGR + +   F +M  
Sbjct: 361 SSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRK 420

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--Q 448
           +G EPD   F+ +L+AC +SG + L  + F SM  DY + P ++H+  +++LL   G  +
Sbjct: 421 NGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFK 480

Query: 449 DSQGYQNSQN-------------------------SFTK-LLQLKPKHPSSYVLLSNIYA 482
           +++   N+                           SF + L++++P++P SYVLLSNIYA
Sbjct: 481 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYA 540

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMA 540
             GRW +VA  R L+  + +KK PG S IE++  VH F  G   H   +EI+  LE++  
Sbjct: 541 TAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 600

Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
              E G++P T  VL  ++EE KE AL  HSEKLA+AFGLI T PGT + IVK L +C +
Sbjct: 601 LLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRN 660

Query: 600 CHSLMK 605
           CH   K
Sbjct: 661 CHEAYK 666


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 231/644 (35%), Positives = 344/644 (53%), Gaps = 81/644 (12%)

Query: 38  IHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I    +T+ L+QIHA  I    +H+  A++ +   L  + S  + I YA   F      N
Sbjct: 22  ISRCKTTRHLKQIHAHFIKTGQIHHPLAAAELLKFL--TLSTQREIKYARKFFSQIHHPN 79

Query: 94  LHIFNVLIRGLAENS-----HFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLL 145
              +N +IR LA++      H  S  +   F   L+   V PN+ T+P V K+ A L+ +
Sbjct: 80  CFSWNTIIRALADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARI 139

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ LH  +VK G+  D FVR +L  +YV  G  + A  +F +T  +    +V+LWNV+
Sbjct: 140 EEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEG---NVVLWNVM 196

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           I+G  ++G LR + ELF  MP K+V SW  +I G  + G  K+A E+F  M         
Sbjct: 197 IDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDM--------- 247

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
                  Q G+               V  N  T+VS L A +++GA+E G  VH +   N
Sbjct: 248 -------QLGD---------------VPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKN 285

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +  +   +G+AL+DMY+KCG+I+ A  VF G   +K+ +TW+A+I GLA+HGR   A+ +
Sbjct: 286 EIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDH 345

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M  +G  P   V++ +L+AC ++G V+   + +  M     + P ++H+  +V+LL 
Sbjct: 346 FWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLG 405

Query: 445 RVGQDSQGYQNSQNSFTK----------------------------LLQLKPKHPSSYVL 476
           R G   +  Q   N   K                            L+   P    SYV 
Sbjct: 406 RAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYVA 465

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSK 534
           LSN++A+EG W+ V +VR  M+   I+KDPG S+IE++G +H F  E   H  A+ IHS 
Sbjct: 466 LSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSM 525

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LE++    R  GY P T  VL N+ E EK+ AL  HSEK+A+AFGLI T P T ++IVK 
Sbjct: 526 LEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIAFGLISTRPQTPLQIVKN 585

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +C DCHS +K  SKI  R+I++RD  RFH+F++G+CSC DYW
Sbjct: 586 LRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDYW 629


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 221/681 (32%), Positives = 357/681 (52%), Gaps = 75/681 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N    T ++ L+ S    +  R +H  ++     +++ I T LI + S+   +  A  +F
Sbjct: 45  NPFVFTTVLKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVF 104

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D  + K++  +  +I   AEN  F   +  F  M     +PN  T+  V K+   L    
Sbjct: 105 DEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFD 164

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +HC ++K+  E D +V V L ++Y + G    A++ F + P+ +    V+ W+ +I
Sbjct: 165 AGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKND----VIPWSFMI 220

Query: 207 NGCSKIGYLRKAVELFGMM------PKKNVASWV-------------------------- 234
           +  ++ G   KA+E+F  M      P +   S V                          
Sbjct: 221 SRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLS 280

Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                  +L+  + + G ++++ ELFE + ++  VSW  +I  + Q G+ E+AL++F  M
Sbjct: 281 TDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNM 340

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           L   V+A + T  S L ACA + ALE G++VH   +   +G   A+G AL+DMYAKCG+I
Sbjct: 341 LRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSI 400

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + A  +F     +D ++W A+I G ++HG   +AI+ F  M  +  +PD   F+ +L+AC
Sbjct: 401 KDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSAC 460

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------- 458
             +G++     +F SM+ DY IEP ++H+T +V L+ R G   Q  +  ++         
Sbjct: 461 SNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMI 520

Query: 459 -------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                              S  ++L+L+P+  +S+VLLSNIYA   RW +VA VR  M+R
Sbjct: 521 WRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKR 580

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + +KK+PG S+IE  G+VH F      H   K I+  LE +    R+ GY P    VL +
Sbjct: 581 KGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLD 640

Query: 558 IKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           +++ EKE  L  HSE+LALAFGL++   G  I+I+K L IC DCHS++K  SKI  R+I+
Sbjct: 641 VEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDII 700

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+F++G+CSC DYW
Sbjct: 701 VRDMNRFHHFENGSCSCADYW 721



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 160/376 (42%), Gaps = 51/376 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV----A 140
           +FD    +N   F  LI G A+++ F   I  F    RL    + L  PFV  +V     
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKF---IEAFELFARLHGEGHELN-PFVFTTVLKLLV 57

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           S+    LGR +H  ++K G   + F+   L D Y   G    A +VFDE   K+    ++
Sbjct: 58  SMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKD----MV 113

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMP---------------------------------- 226
            W  +I   ++     +A+E F  M                                   
Sbjct: 114 SWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSV 173

Query: 227 -----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                ++++   V L++ + R GD   A   F  MP+  V+ W+ MI+ F+Q+G++EKAL
Sbjct: 174 LKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKAL 233

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            +F QM  A V  N FT  S L A A + +L+    +H +           +  AL+  Y
Sbjct: 234 EIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACY 293

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AKCG IE +  +F    +++ ++W  +I      G  E+A+  F  M+    +     + 
Sbjct: 294 AKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYS 353

Query: 402 AILTACWYSGQVKLAL 417
           +IL AC     ++L L
Sbjct: 354 SILRACATLAALELGL 369



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 89/171 (52%), Gaps = 7/171 (4%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F++MPE+  VS+  +I+G++Q+ +  +A  +F ++   G   N F   + L     +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
            E G  VH  +    +G    IGTAL+D Y+  G +  A  VF E   KD+++WT MI  
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
            A +  + +A+++F +M  +G +P+   F  +L AC       L L  FD+
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKAC-------LGLQNFDA 165


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  367 bits (941), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 210/611 (34%), Positives = 319/611 (52%), Gaps = 79/611 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +NV +R LA  S F   IS +  MLR    P+  ++PF+ KS ASLSL   G+ LHC ++
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS------ 210
           + G E + FV   L  MY + G    A KVF+E P  + S+  + +N LI+G +      
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENP--HSSQLGVCYNALISGYTANSKVS 135

Query: 211 ----------KIGYLRKAVELFGMMPKKNVASWV-----------------------SLI 237
                     + G    +V + G++P   V  ++                       S I
Sbjct: 136 DAAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFI 195

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
             +M+ G ++    LF++MP KG+++W A+I+G+SQNG A   L +F QM  +GV  + F
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPF 255

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+VS LS+CA +GA + G  V   +  N F     +  AL+ MYA+CGN+  A  VF   
Sbjct: 256 TLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIM 315

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
             K L++WTAMI    +HG  E  +  F  M+  G  PDG VF+ +L+AC +SG     L
Sbjct: 316 PVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 375

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ----------------------- 454
             F +M+ +Y +EP  +H++ +V+LL R G+  +  +                       
Sbjct: 376 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKI 435

Query: 455 -----NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
                 ++ +F K+++ +P +   YVL+SNIY+     + + R+R +M+ R+ +K PG+S
Sbjct: 436 HKNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 495

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE-QGYMPGTEWVLHNIKEEKEEAL 566
           Y+E  G VH F AG   H+  +E+H  L+++     E  G M           EE     
Sbjct: 496 YVEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDR------GEEVSSTT 549

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
             HSE+LA+AFG++ + PGT I ++K L +C DCH  +K  SKI  R  V+RD +RFHYF
Sbjct: 550 REHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYF 609

Query: 626 KDGTCSCRDYW 636
           KDG CSC+DYW
Sbjct: 610 KDGVCSCKDYW 620



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/272 (23%), Positives = 110/272 (40%), Gaps = 19/272 (6%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H + +    ++   +    I+      S++    +FD    K L  +N +I G ++N
Sbjct: 173 RSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQN 232

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M    V P+  T   V  S A L    +G+ +  L+  +G   + F+ 
Sbjct: 233 GLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLS 292

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELFGMMP 226
             L  MY + G    A  VFD  P K    S++ W  +I GC  + G     + LF  M 
Sbjct: 293 NALISMYARCGNLAKARAVFDIMPVK----SLVSWTAMI-GCYGMHGMGETGLTLFDDMI 347

Query: 227 KKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEA 277
           K+ +    A +V ++      G   K  ELF  M      E G   ++ +++   + G  
Sbjct: 348 KRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRL 407

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
           ++A+    + +D+     D  V  AL    K+
Sbjct: 408 DEAM----EFIDSMPVEPDGAVWGALLGACKI 435



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 2/147 (1%)

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW   +   +      ++++++  ML +G   + F+    L +CA +    +G ++H ++
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL--TWTAMIWGLAIHGRYEQ 380
                  +  + TAL+ MY KCG +E A  VF E      L   + A+I G   + +   
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A   F++M  +G   D    L ++  C
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLC 163


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  366 bits (940), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 217/613 (35%), Positives = 330/613 (53%), Gaps = 79/613 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N  +R LA+   F   +S +  MLR   RPN  T+PF  KS A+LSL  LG   H  I 
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CS 210
           K G  ++ FV+  L  MY +      A KVF+E     K    + +N L++G      CS
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL--TVCYNALVSGYVSNSKCS 134

Query: 211 KI----------GYLRKAVELFGMMP-------------------KKNVASWVSLIDGF- 240
           +           G    +V L G++P                   K    S VS+++ F 
Sbjct: 135 EAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 194

Query: 241 ---MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
              M+ G +  A +LF++MP KG++SW AM++G++QNG A   L ++  M   GV  +  
Sbjct: 195 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 254

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+V  LS+CA +GA   G  V   I  + F     +  AL++MYA+CGN+  A  VF   
Sbjct: 255 TLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 314

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            E+ L++WTA+I G  +HG  E A+Q FK+M+ SG EPDGT F+ +L+AC ++G     L
Sbjct: 315 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 374

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------------- 452
            +F  M+ +Y +EP  +H++ +V+LL R G+  +                          
Sbjct: 375 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 434

Query: 453 YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
           ++N   ++ +F ++++L+P++   YVLLSNIY+     K V R+R +M+ + +KKDPG S
Sbjct: 435 HKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCS 494

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-- 565
           Y+E+ G VH F  G   H  + EI+  LE++ A   ++   P  +    N +E  ++   
Sbjct: 495 YVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----NREESNKDGFT 550

Query: 566 -LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            +G HSEKLA+AFGL+ TT G  + I+K L IC DCH   K  SKI  R++ +RD TRFH
Sbjct: 551 RVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFH 610

Query: 624 YFKDGTCSCRDYW 636
           +F++G+CSC+DYW
Sbjct: 611 HFRNGSCSCKDYW 623



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 125/297 (42%), Gaps = 14/297 (4%)

Query: 1   MKGHVFN-RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+V N + + A+     +     P N++T   +I    S  + +    +H   + +  
Sbjct: 124 VSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 183

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            +   +    I+      S++YA  +FD    K L  +N ++ G A+N    + +  +  
Sbjct: 184 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 243

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M    V P+ +T   V  S A+L   S+G  +   I  SG   + F+   L +MY + G 
Sbjct: 244 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGN 303

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVS 235
              A  VFD  PE+    +++ W  +I G    G+   AV+LF  M +  +     ++V 
Sbjct: 304 LTKAQAVFDGMPER----TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 359

Query: 236 LIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           ++      G   +  E F+ M      E G   ++ M++   + G  ++A  +   M
Sbjct: 360 VLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESM 416


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 222/662 (33%), Positives = 358/662 (54%), Gaps = 79/662 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H   +   L     ++  LI+     + I  A ++F++ + ++L  +N +I G+A++
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-LSLGRGLHCLIVKSGVEYDAFV 166
                 +  F+ +LR  ++P+  T   V K+ +SL   LSL + +H   +K+    D+FV
Sbjct: 402 DLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFV 461

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L D Y +    + A  +F        +  ++ WN +++G ++     K +ELF +M 
Sbjct: 462 STALIDAYSRNRCMKEAEVLFGRN-----NFDLVAWNAMMSGYTQSHDGHKTLELFALMH 516

Query: 227 KKNVAS-------------------------------------WVS--LIDGFMRKGDLK 247
           K+   S                                     WVS  ++D +++ GD+ 
Sbjct: 517 KQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 576

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A   F+ +P    V+WT +I+G  +NGE E+AL +F QM   GV  ++FT+ +   A +
Sbjct: 577 AAQFAFDSIPVPDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASS 636

Query: 308 KVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
            + ALE G ++H N +  N       +GT+LVDMYAKCG+I+ A  +F   +  ++  W 
Sbjct: 637 CLTALEQGRQIHANALKLNCTS-DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWN 695

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AM+ GLA HG  ++A+Q FK+M   G +PD   F+ +L+AC +SG V  A  +  SM  D
Sbjct: 696 AMLVGLAQHGEGKEALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRD 755

Query: 427 YFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSF------------------ 460
           Y I+P ++H++ + + L R G         DS   + S + +                  
Sbjct: 756 YGIKPEIEHYSCLADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKR 815

Query: 461 --TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
             TKLL+L+P   S+YVLLSN+YAA  +W ++   RT+M+   +KKDPG+S+IEV   +H
Sbjct: 816 VATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 875

Query: 519 RF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLAL 575
            F  +   +   + I+ K++D++   +++GY+P T++ L ++ +EEKE AL  HSEKLA+
Sbjct: 876 LFVVDDRSNPQTELIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAV 935

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGL+ T P T I+++K L +CGDCH+ MKY SK+  REIVLRD  RFH FKDG CSC D
Sbjct: 936 AFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGD 995

Query: 635 YW 636
           YW
Sbjct: 996 YW 997



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 170/373 (45%), Gaps = 26/373 (6%)

Query: 51  HAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS-- 108
           HA+I+         +   LIS  S   S+ YA  +FD    ++L  +N ++   A++S  
Sbjct: 69  HARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEG 128

Query: 109 ---HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
              + +     F  + +  V  +R+T   + K       +      H    K G++ D F
Sbjct: 129 VVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDF 188

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
           V   L ++Y++ GK +    +F+E P ++    V+LWN+++    ++G+  +A++L    
Sbjct: 189 VAGALVNIYLKFGKVKEGRVLFEEMPYRD----VVLWNLMLKAYLEMGFKEEAIDLSSAF 244

Query: 223 ---GMMPKKNVASWVSLIDGFMRKGDLKKAGEL--FEQMPEKG----VVSWTAMINGFSQ 273
              G+ P +     +S I      GD  +AG++  FE   +      ++S   +++G+  
Sbjct: 245 HTSGLHPNEITLRLLSRI-----SGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLH 299

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
            G+    L  F  M+++ +  +  T +  L+   ++ +L  G +VH         L   +
Sbjct: 300 AGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTV 359

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
             +L++MY K   I  A  VF    E+DL++W ++I G+A      +A+  F +++  G 
Sbjct: 360 SNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGL 419

Query: 394 EPDGTVFLAILTA 406
           +PD     ++L A
Sbjct: 420 KPDHYTMTSVLKA 432



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 28/291 (9%)

Query: 43  STKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
           +  Q +Q+HA  I      +L+ SS I    +    +      A   FD     +   + 
Sbjct: 539 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA----AQFAFDSIPVPDDVAWT 594

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
            LI G  EN   +  +  F  M  + V P+  T   ++K+ + L+ L  GR +H   +K 
Sbjct: 595 TLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKL 654

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
               D FV   L DMY + G    A+ +F      N    +  WN ++ G ++ G  ++A
Sbjct: 655 NCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN----ITAWNAMLVGLAQHGEGKEA 710

Query: 219 VELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQM-------PEKGVVSWTAM 267
           ++LF  M     K +  +++ ++      G + +A +    M       PE  +  ++ +
Sbjct: 711 LQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPE--IEHYSCL 768

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
            +   + G  ++A  +   M    + A+     + L+AC   G  E G RV
Sbjct: 769 ADALGRAGLVKEAENLIDSM---SMEASASMYRTLLAACRVQGDTETGKRV 816


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  366 bits (939), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 221/700 (31%), Positives = 360/700 (51%), Gaps = 75/700 (10%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R + AI   + ++      N    + ++ L+ S+   K    +HA +      + + + T
Sbjct: 125 RFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGT 184

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI   S+    + A  +FD    K++  +  ++    EN  F+  +  F  M  +  +P
Sbjct: 185 ALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKP 244

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N  T+  V K+   L + ++G+ +H    K+    + FV V L D+Y++ G    A +VF
Sbjct: 245 NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------KNVASW 233
           +E P+    + V+ W+ +I   ++     +A+E+F  M +              +  AS 
Sbjct: 305 EEMPK----DDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASL 360

Query: 234 V-------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
           V                         +L+D + + G ++ + +LF + P    VSW  +I
Sbjct: 361 VDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVI 420

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G+ Q G  EKAL +F  ML+  V+  + T  S L ACA + ALE G ++H+      + 
Sbjct: 421 VGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYD 480

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +G AL+DMYAKCGNI+ A LVF   +E D ++W AMI G ++HG Y +A++ F+ M
Sbjct: 481 KNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESM 540

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           + +  +PD   F+ IL+AC  +G +     +F SM  +Y IEP  +H+T +V LL R G 
Sbjct: 541 LETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGH 600

Query: 449 DSQG----------------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNI 480
             +                              +  + S  ++L+++P+  +++VLLSNI
Sbjct: 601 LDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNI 660

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YA   RW +VA +RT M+R+ I+K+PG S+IE  G VH F  G   H   K I+  LE +
Sbjct: 661 YANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGMLEWL 720

Query: 539 MAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
              AR +GY+P    VL ++++ +KE+ L  HSE+LALA+GLI+T   + ++I+K L IC
Sbjct: 721 NMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNLRIC 780

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+ +K  SKI QR+I++RD  RFH+F +G CSC DYW
Sbjct: 781 ADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 179/403 (44%), Gaps = 51/403 (12%)

Query: 48  RQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           + +H +II      +LFA++ +    +     + S+  A  +FD    +N   F  LI+G
Sbjct: 64  KYLHCEIIKKGNCLDLFANNILLNFYVK----YDSLPDAAKLFDEMPDRNTVSFVTLIQG 119

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            ++   F   I  F  +       N   +  V K + S     LG  +H  + K G + D
Sbjct: 120 YSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSD 179

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
           AFV   L D Y   G    A +VFD    K+    ++ W  ++    +     ++++LF 
Sbjct: 180 AFVGTALIDCYSVCGYAECARQVFDAIEYKD----MVSWTGMVACYVENECFEESLKLFS 235

Query: 224 MMP----KKNVASW-----------------------------------VSLIDGFMRKG 244
            M     K N  ++                                   V LID +++ G
Sbjct: 236 RMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSG 295

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           D+  A ++FE+MP+  V+ W+ MI  ++Q+ ++E+A+ MF +M    V  N FT+ S L 
Sbjct: 296 DVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQ 355

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA +  L+ G ++H ++      +   +  AL+DMYAKCG +E +  +F E+     ++
Sbjct: 356 ACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVS 415

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           W  +I G    G  E+A+  FK M+    +     + ++L AC
Sbjct: 416 WNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRAC 458


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 238/697 (34%), Positives = 363/697 (52%), Gaps = 113/697 (16%)

Query: 44  TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVL 100
           +  +R IHAQ+I   L  ++   ++L+    +    D   YA+S+FD     NL I+N +
Sbjct: 1   SSSVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTM 60

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
            RG A +S   S +  ++ M+ L + P+  T+PF+ KS A   +   G+ +H  ++K G 
Sbjct: 61  FRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGF 120

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------------------- 194
           + D +V   L  MY Q G+   A KVFD +  ++                          
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180

Query: 195 -KSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PK------------------- 227
              + V+ WN +I+G  + G  ++A+ELF  M       P                    
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 228 -KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
            ++V SW+             +LID + + G+++ A ELF+ +  K V+SW  +I G++ 
Sbjct: 241 GRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
               ++AL +F +ML +G   ND T++S L ACA +GA++ G  +H YI+     LKG +
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKK---LKGVV 357

Query: 334 G------TALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                  T+L+DMYAKCG+I+AA  VF  +   + L TW AMI G A+HGR   A   F 
Sbjct: 358 TNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFS 417

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M  +G EPD   F+ +L+AC +SG + L  N F SM   Y I P ++H+  +++LL   
Sbjct: 418 RMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHS 477

Query: 447 G--QDSQGYQNSQ-------------------------NSFTK-LLQLKPKHPSSYVLLS 478
           G  ++++   N+                           SF K L++++P +  SYVLLS
Sbjct: 478 GLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLS 537

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKD-PGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
           NIYAA GRW +VA++R L+  + +KK  PG S IE++  VH F  G   H   +EI+  L
Sbjct: 538 NIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGML 597

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E++     E G++P T  VL  ++EE +E AL  HSEKLA+AFGLI T PGT + I+K L
Sbjct: 598 EEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNL 657

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
            +C +CH   K  SKI +REI+ RD TRF +F+DG C
Sbjct: 658 RVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 75/298 (25%), Positives = 127/298 (42%), Gaps = 18/298 (6%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T   ++S    S+S +  R +H+ I  H   ++ +I   LI   S    ++ A  +FD  
Sbjct: 224 TMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL 283

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             K++  +N LI G    + ++  +  F  MLR    PN +T   +  + A L  + +GR
Sbjct: 284 WNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 343

Query: 150 GLHCLI---VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            +H  I   +K  V   + ++  L DMY + G    A +VFD +   N+S S   WN +I
Sbjct: 344 WIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSS-MSNRSLST--WNAMI 400

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           +G +  G    A ++F  M    +     ++V L+      G L     +F  M     +
Sbjct: 401 SGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEI 460

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +     +  MI+    +G  ++A  M   M    +  +     S L AC   G LE G
Sbjct: 461 TPKLEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLKACKIHGNLELG 515


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  365 bits (937), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 216/613 (35%), Positives = 329/613 (53%), Gaps = 79/613 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N  +R LA+   F   +S +  MLR   RPN  T+PF  KS A+LSL  LG   H  I 
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------CS 210
           K G  ++ FV+  L  MY +      A KVF+E     K    + +N L++G      CS
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKL--TVCYNALVSGYVSNSKCS 125

Query: 211 KI----------GYLRKAVELFGMMP-------------------KKNVASWVSLIDGF- 240
                       G    +V L G++P                   K    S VS+++ F 
Sbjct: 126 DAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFI 185

Query: 241 ---MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
              M+ G +  A +LF++MP KG++SW AM++G++QNG A   L ++  M   GV  +  
Sbjct: 186 TMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPV 245

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+V  LS+CA +GA   G  V   +  + F     +  AL++MYA+CGN+  A  VF   
Sbjct: 246 TLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGM 305

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            E+ L++WTA+I G  +HG  E A+Q FK+M+ SG EPDGT F+ +L+AC ++G     L
Sbjct: 306 PERTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGL 365

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------------- 452
            +F  M+ +Y +EP  +H++ +V+LL R G+  +                          
Sbjct: 366 EYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKI 425

Query: 453 YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
           ++N   ++ +F ++++L+P++   YVLLSNIY+     K V R+R +M+ + +KKDPG S
Sbjct: 426 HKNVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCS 485

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-- 565
           Y+E+ G VH F  G   H  + EI+  LE++ A   ++   P  +    N +E  ++   
Sbjct: 486 YVELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKD----NREESNKDGFT 541

Query: 566 -LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            +G HSEKLA+AFGL+ TT G  + I+K L IC DCH   K  SKI  R++ +RD TRFH
Sbjct: 542 RVGVHSEKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFH 601

Query: 624 YFKDGTCSCRDYW 636
           +F++G+CSC+DYW
Sbjct: 602 HFRNGSCSCKDYW 614



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 65/297 (21%), Positives = 125/297 (42%), Gaps = 14/297 (4%)

Query: 1   MKGHVFN-RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+V N + + A+     +     P N++T   +I    S  + +    +H   + +  
Sbjct: 115 VSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGF 174

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            +   +    I+      S++YA  +FD    K L  +N ++ G A+N    + +  +  
Sbjct: 175 DSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRN 234

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M    V P+ +T   V  S A+L   S+G  +   +  SG   + F+   L +MY + G 
Sbjct: 235 MDMNGVHPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGN 294

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVS 235
              A  VFD  PE+    +++ W  +I G    G+   AV+LF  M +  +     ++V 
Sbjct: 295 LTKAQAVFDGMPER----TLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVC 350

Query: 236 LIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           ++      G   +  E F+ M      E G   ++ M++   + G  ++A  +   M
Sbjct: 351 VLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESM 407


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 213/646 (32%), Positives = 348/646 (53%), Gaps = 71/646 (10%)

Query: 27   NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            +  T T +++L  +  +  Q RQIHA +I  N+  +  + T+L+   S    ++YA  IF
Sbjct: 478  DQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIF 537

Query: 87   DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            +    +N + +N +I G  +N   Q  +  F  M    ++P+  +   +  S  SLS   
Sbjct: 538  NRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQ 597

Query: 147  LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             GR LH  IV++ +E +  ++V L DMY + G    A+KV+D+T +K+    V+L NV++
Sbjct: 598  KGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKD----VILNNVMV 653

Query: 207  NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
            +                                F+  G    A  LF+QM ++    W +
Sbjct: 654  SA-------------------------------FVNSGRANDAKNLFDQMEQRNTALWNS 682

Query: 267  MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
            ++ G++  G  +++   F +ML++ +  +  T+V+ ++ C+ + ALE G ++H+ I    
Sbjct: 683  ILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKG 742

Query: 327  F-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F      + TALVDMY+KCG I  A  VF     K++++W AMI G + HG  ++A+  +
Sbjct: 743  FVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILY 802

Query: 386  KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            ++M   G  P+   FLAIL+AC ++G V+  L  F SM+ DY IE   +H+T +V+LL R
Sbjct: 803  EEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGR 862

Query: 446  VG--QDSQGY--------------------------QNSQNSFTKLLQLKPKHPSSYVLL 477
             G  +D++ +                             + +  +L +L P++P  YV++
Sbjct: 863  AGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIM 922

Query: 478  SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
            SNIYAA GRWK+V  +R +M+ + +KKDPG S+IE+N  +  F AG   H   +EI++ L
Sbjct: 923  SNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNL 982

Query: 536  EDIMAGAREQGYMPGTEWVLHNIKEEKEEA----LGCHSEKLALAFGLIQTTPGTTIKIV 591
              +   ++  GY+P T ++L N+K+ KEE     L  HSE+LAL+ GLI     +TI++ 
Sbjct: 983  RHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVF 1042

Query: 592  KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            K L ICGDCH+  K+ SKI+ R I+ RDT RFH+F++G CSC DYW
Sbjct: 1043 KNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 1088



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 196/447 (43%), Gaps = 49/447 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H+++I       + +   LI   +     +  L +FD    +N   +N +I   A+ 
Sbjct: 296 KQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQF 355

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            HF   +  F+ M     + NR     +  + A L+ +  GR LH  +V++ +  D  + 
Sbjct: 356 GHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILG 415

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY + G    A +VF    E+N+    + +N L+ G  + G   +A+EL+     
Sbjct: 416 SALVDMYSKCGMVEEAHQVFRSLLERNE----VSYNALLAGYVQEGKAEEALELYHDMQS 471

Query: 223 --GMMPK---------------------------------KNVASWVSLIDGFMRKGDLK 247
             G+ P                                  KN+     L+  +   G L 
Sbjct: 472 EDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLN 531

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A E+F +M E+   SW +MI G+ QNGE ++AL +F QM   G++ + F++ S LS+C 
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 591

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            +   + G  +HN+I  N    +G +   LVDMYAKCG+++ A  V+ +T +KD++    
Sbjct: 592 SLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNV 651

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           M+      GR   A   F +M    T     ++ +IL      G  K + N F  M  + 
Sbjct: 652 MVSAFVNSGRANDAKNLFDQMEQRNT----ALWNSILAGYANKGLKKESFNHFLEM-LES 706

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
            IE  V     +VNL S +     G Q
Sbjct: 707 DIEYDVLTMVTIVNLCSSLPALEHGDQ 733



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 196/430 (45%), Gaps = 50/430 (11%)

Query: 24  KPSNNITETHIISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           KP++++      SLI     SNS ++ + IH Q+I +     + + T+++   +    +D
Sbjct: 64  KPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 81  ---YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
              YA  +F+    +NL  +N +I   A    +   +  +  M       ++ T+P V K
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIK 183

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +  ++  +   R L   +VK+G+  + FV   L D Y + G    A    DE     +  
Sbjct: 184 ACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEI----EGT 239

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNVA 231
           SV+ WN +I G  KI    +A  +F  M K                          K V 
Sbjct: 240 SVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVH 299

Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           S +             +LID + +  D +   ++F++M E+  V+W ++I+  +Q G   
Sbjct: 300 SKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFN 359

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
            AL +F +M ++G ++N F + S L A A +  +  G  +H ++  N       +G+ALV
Sbjct: 360 DALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALV 419

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDG 397
           DMY+KCG +E A  VF    E++ +++ A++ G    G+ E+A++ +  M    G +PD 
Sbjct: 420 DMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQ 479

Query: 398 TVFLAILTAC 407
             F  +LT C
Sbjct: 480 FTFTTLLTLC 489



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/429 (22%), Positives = 196/429 (45%), Gaps = 44/429 (10%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++ S   S+  T   +I    +      +RQ+ + ++   L  +  +   L+   +    
Sbjct: 166 MRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGW 225

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A++  D     ++  +N +I G  +   ++     F  ML++ V P+  T+    + 
Sbjct: 226 MDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRV 285

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             +L     G+ +H  ++  G + D FV   L DMY +        KVFDE  E+N+   
Sbjct: 286 CGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ--- 342

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK-------NVASWV----------------- 234
            + WN +I+  ++ G+   A+ LF  M +        N+ S +                 
Sbjct: 343 -VTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHG 401

Query: 235 ---------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                          +L+D + + G +++A ++F  + E+  VS+ A++ G+ Q G+AE+
Sbjct: 402 HLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEE 461

Query: 280 ALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           AL ++  M  + G++ + FT  + L+ CA       G ++H ++   +      + T LV
Sbjct: 462 ALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELV 521

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CG +  A  +F    E++  +W +MI G   +G  ++A++ FK+M  +G +PD  
Sbjct: 522 HMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCF 581

Query: 399 VFLAILTAC 407
              ++L++C
Sbjct: 582 SLSSMLSSC 590



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/416 (24%), Positives = 183/416 (43%), Gaps = 60/416 (14%)

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG---AF 184
           N L Y  + +     +    G+ +H  ++ +G   DA++   +  +Y + G       A 
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYAR 129

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------------PK----- 227
           K+F+E PE+N    +  WN +I   +++    + + L+G M            P      
Sbjct: 130 KLFEEMPERN----LTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC 185

Query: 228 ---------KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                    + + S V             +L+DG+ R G +  A    +++    VV+W 
Sbjct: 186 IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWN 245

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISC 324
           A+I G+ +    E+A  +F +ML  GV  ++FT  SAL  C  + + + G +VH+  I+C
Sbjct: 246 AVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 305

Query: 325 NDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              G KG   +G AL+DMYAKC + E+   VF E  E++ +TW ++I   A  G +  A+
Sbjct: 306 ---GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDAL 362

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F +M  SG + +     +IL A      +         +  +  +   +   + +V++
Sbjct: 363 VLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRN-LLNSDIILGSALVDM 421

Query: 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
            S+ G   + +Q     F  LL+   ++  SY  L   Y  EG+ ++   +   MQ
Sbjct: 422 YSKCGMVEEAHQ----VFRSLLE---RNEVSYNALLAGYVQEGKAEEALELYHDMQ 470


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  365 bits (936), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 211/630 (33%), Positives = 346/630 (54%), Gaps = 79/630 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +NL  + ++I   A+    +  I  F+ M      P+R TY  V  +   
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
           L LL+LG+ LH  +++ G+  D  V   L DMY +    G    + KVF++ PE N    
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 124

Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
           V+ W  +I   ++ G   K A+ELF  M                            + V 
Sbjct: 125 VMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 184

Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           S+              SLI  + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 185 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 244

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A  +F ++ D G+  + FT  S LS  A +GA+  G ++H  +    +     I  AL+
Sbjct: 245 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 304

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CGNIEAA  VF E +++++++WT+MI G A HG   +A++ F KM+ +GT+P+  
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 364

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS 456
            ++A+L+AC + G +      F+SM  ++ I P ++H+  +V+LL R G   ++  + NS
Sbjct: 365 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 424

Query: 457 --------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +++   +L+ +P  P++Y+LLSN++A+ G+WKDV
Sbjct: 425 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 484

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
            ++R  M+ R++ K+ G S+IEV   VHRF  G   H  A +I+ +L+ + +  +E GY+
Sbjct: 485 VKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 544

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P T++VLH+I+EE KE+ L  HSEK+A+AFGLI T+    I+I K L +CGDCH+ +KY 
Sbjct: 545 PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYI 604

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S  + REIV+RD+ RFH+ K+G CSC DYW
Sbjct: 605 SMATGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 203/464 (43%), Gaps = 44/464 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q+H+++I   L     +   L+   +  +   S+D +  +F+     N+  +  +I   
Sbjct: 76  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 135

Query: 105 AENSHF-QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           A++    +  I  F  M+   +RPN  ++  V K+  +LS    G  ++   VK G+   
Sbjct: 136 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 195

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLWN---- 203
             V   L  MY + G+   A K FD   EKN                  E+ LL+N    
Sbjct: 196 NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 255

Query: 204 -----------VLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKK 248
                       L++G + IG + K  ++ G + K     N     +LI  + R G+++ 
Sbjct: 256 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 315

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F +M ++ V+SWT+MI GF+++G A +AL MF +ML+ G + N+ T V+ LSAC+ 
Sbjct: 316 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 375

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG-NIEAASLVFGETKEKDLLTW 365
           VG +  G +  N +   + G+   +     +VD+  + G  +EA   +       D L W
Sbjct: 376 VGMISEGQKHFNSMY-KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 434

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             ++    +HG  E   ++  +M+      D   ++ +      +GQ K  +    SM+ 
Sbjct: 435 RTLLGACRVHGNTELG-RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 493

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469
              I+ +      V N + R       +  +   + +L QL  K
Sbjct: 494 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASK 537



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 17/368 (4%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     + S H   N+ + + ++    + +      Q+++  +   + + + +   LIS
Sbjct: 145 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 204

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +    ++ A   FD    KNL  +N ++ G A+N   +     F  +    +  +  T
Sbjct: 205 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 264

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  +    AS+  +  G  +H  ++K G + +  +   L  MY + G    AF+VF+E  
Sbjct: 265 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 324

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
           ++N    V+ W  +I G +K G+  +A+E+F  M     K N  ++V+++      G + 
Sbjct: 325 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 380

Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           +  + F  M  E G+V     +  M++   ++G   +A+     M    + A+     + 
Sbjct: 381 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 437

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L AC   G  E G      I   +     A    L +++A  G  +    +    KE++L
Sbjct: 438 LGACRVHGNTELGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNL 496

Query: 363 LTWTAMIW 370
           +      W
Sbjct: 497 IKEAGCSW 504


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 221/623 (35%), Positives = 334/623 (53%), Gaps = 68/623 (10%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           I  + N    H      +ET  I L+ + NS  +LRQ+HAQII  N   S    T++   
Sbjct: 10  IPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLV 69

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
            +   S  YA  IF+    +    F  N  ++ LAE       I  F  + +  V P+  
Sbjct: 70  CAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTF 129

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T   V ++  +L  LS GR LH ++ K G           +++Y+Q              
Sbjct: 130 TCSSVLRACLNLLDLSNGRILHGVVEKVGFR---------SNLYLQ-------------- 166

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                       N++++  +  G + +A  LF  MP+++V +W  +I   +++GD + A 
Sbjct: 167 ------------NMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAY 214

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           +LF +MPE+ V SWT+MI G+ Q G+A++A+ +F +M +AGV+ N+ TVV+ L+ACA +G
Sbjct: 215 DLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLG 274

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           AL+ G+R+H Y + + F     I   L+DMY KCG +E A  VF E +E+ +++W+AMI 
Sbjct: 275 ALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIG 334

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           GLA+HGR E+A++ F  M   G EP+G  F+ +L AC + G +     FF SM  DY I 
Sbjct: 335 GLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGII 394

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQ----------------------------NSQNSFTK 462
           P ++H+  +V+LLSR G   + ++                             ++ +   
Sbjct: 395 PQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKH 454

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           LL+L P +   YV+LSNIYA  GRW+D ARVR  M+ R +KK PGWS I V+G VH F A
Sbjct: 455 LLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVA 514

Query: 523 G--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGL 579
           G   H   ++I  + E+++   R +GY+P T  VL +I+E EK + +  HSEKLAL FGL
Sbjct: 515 GEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGL 574

Query: 580 IQTTPGTTIKIVKKLTICGDCHS 602
           + T   T I+I+K L IC DCHS
Sbjct: 575 MNTPAETPIRIMKNLRICEDCHS 597


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  365 bits (936), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 222/678 (32%), Positives = 355/678 (52%), Gaps = 71/678 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T T ++S + S  +    R++HAQ +     ++  +   LI+  S    ++ A ++F
Sbjct: 200 NPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVF 259

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                +++  +N L+ GL  N H    +  F        + ++ TY  V K  A+L  L+
Sbjct: 260 RQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLA 319

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L R LH  ++K G   D  V   + D Y + G+   AF +F   P    S++V+ W  +I
Sbjct: 320 LARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMP---GSQNVVSWTAMI 376

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV-----------------------------------A 231
            GC +   +  A  LF  M + NV                                   +
Sbjct: 377 GGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKTNYQHAPS 436

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              +L+  + + G+ ++A  +F+ +  K VV+W+AM++ +SQ G+ + A  +F +M   G
Sbjct: 437 VGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQG 496

Query: 292 VRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           ++ N+FT+ SA+ ACA   A ++ G + H       +     +G+ALV MYA+ G+I++A
Sbjct: 497 MKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSA 556

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
            +VF    ++DL++W +MI G A HG  ++A+  F++M   G E DG  FLA++  C ++
Sbjct: 557 RIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHA 616

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTK 462
           G VK    +FDSM  D+ I P+++H++ +V+L SR G+        +   +      +  
Sbjct: 617 GLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRT 676

Query: 463 LL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
           LL                     L+P   ++YVLLSNIYAA GRWK+   VR LM  + +
Sbjct: 677 LLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKV 736

Query: 503 KKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+ G S+I++   VH F A    H L+++I++KL+ +    +++GY P T  VLH+I E
Sbjct: 737 KKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAE 796

Query: 561 E-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E KE  L  HSE+LALAFGLI T P T ++IVK L +CGDCH +MK  S I  REI++RD
Sbjct: 797 EQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRD 856

Query: 620 -TRFHYFKDGTCSCRDYW 636
            +RFH+F  G CSC D+W
Sbjct: 857 CSRFHHFNAGACSCGDFW 874



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 156/363 (42%), Gaps = 48/363 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F+    +N+  +  L+ G  +       ++ F  M    V PN  T+  V  +VAS   
Sbjct: 157 VFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGA 216

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           + LGR +H   VK G     FV   L +MY + G    A  VF +   ++    ++ WN 
Sbjct: 217 VDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRD----MVSWNT 272

Query: 205 LING-----------------------------------CSKIGYLRKAVELFGMMPKKN 229
           L+ G                                   C+ +  L  A +L   + K  
Sbjct: 273 LMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHG 332

Query: 230 VAS----WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMF 284
             S      +++D + + G+L  A  +F  MP  + VVSWTAMI G  QN +   A A+F
Sbjct: 333 FHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALF 392

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M +  V+ N+FT  + L+A   +   +    +H  I   ++    ++GTAL+  Y+K 
Sbjct: 393 SRMREDNVKPNEFTYSTVLTASIPILLPQ----IHAQIIKTNYQHAPSVGTALLASYSKL 448

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           GN E A  +F     KD++ W+AM+   +  G  + A   F KM   G +P+     + +
Sbjct: 449 GNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAI 508

Query: 405 TAC 407
            AC
Sbjct: 509 DAC 511



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 127/268 (47%), Gaps = 41/268 (15%)

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGA-----FKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           G   D FV VH      + G+ +GA      KV    P++   E +         C K G
Sbjct: 82  GEALDHFVDVH------RCGRVQGAAVSRVLKVCGLIPDRVSGEQLHCL------CVKCG 129

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
           + R             V    +L+D +M+ G ++    +FE MP++ VV+WT+++ G+ Q
Sbjct: 130 FDRA-----------EVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQ 178

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA- 332
                  +A+FF+M   GV  N FT  S LSA A  GA++ G RVH       FG +   
Sbjct: 179 GRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH--AQSVKFGCRSTV 236

Query: 333 -IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +  +L++MY+KCG +E A  VF + + +D+++W  ++ GL ++    +A+Q F      
Sbjct: 237 FVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFH----- 291

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNF 419
               D    +A L+   YS  +KL  N 
Sbjct: 292 ----DSRASMAKLSQSTYSTVIKLCANL 315



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 42/270 (15%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP+     + I +    +    Q RQ HA  I +    +  + + L++  +   SID A 
Sbjct: 498 KPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSAR 557

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F+  T ++L  +N +I G A++ + +  +  F  M  + +  +  T+           
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATF----------- 606

Query: 144 LLSLGRGLHCLIVKSGVEY-DAFVRVH-----------LADMYVQLGKTRGAFKVFDETP 191
           L  +    H  +VK G +Y D+ V  H           + D+Y + GK      + +  P
Sbjct: 607 LAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMP 666

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVEL-------FGMMPKKNVASWVSLIDGFMRKG 244
                   ++W  L+  C     + K VEL         ++   + A++V L + +   G
Sbjct: 667 ---FPAGAMVWRTLLGACR----VHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAG 719

Query: 245 DLKKAGELFEQMPEKGV-----VSWTAMIN 269
             K+  E+ + M  K V      SW  + N
Sbjct: 720 RWKERDEVRKLMDSKKVKKEAGCSWIQIKN 749


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  364 bits (935), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 213/630 (33%), Positives = 338/630 (53%), Gaps = 82/630 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--ASL 142
           +FD    +++ ++N++++G  +    +     F    R  +RP+  +   +      A  
Sbjct: 240 LFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGT 299

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             L LG+ +H + VKSG++ D  V   L +MY ++G    A +VF++     K   ++ W
Sbjct: 300 DDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDM----KHLDLISW 355

Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSL-------------------- 236
           N +I+ C++     ++V LF      G+ P     + ++L                    
Sbjct: 356 NSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIH 415

Query: 237 ------------------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                             +D +++ GD+  AG +F  +     V+WT+MI+G   NG  +
Sbjct: 416 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 475

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +AL ++ +M  + V  +++T  + + A + V ALE G ++H  +   D      +GT+LV
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLV 535

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMYAKCGNIE A  +F +   +++  W AM+ GLA HG  E+A+  FK M   G EPD  
Sbjct: 536 DMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRV 595

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDS------ 450
            F+ IL+AC ++G    A  +  SM  DY IEP ++H++ +V+ L R G  Q++      
Sbjct: 596 SFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIET 655

Query: 451 -------------------QG-YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                              QG  +  +    +L  L+P   ++YVLLSNIYAA  RW DV
Sbjct: 656 MPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDV 715

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYM 548
              R +M+R+++KKDPG+S+I+V   +H F  +   H  A  I+ K+E++M   RE GY+
Sbjct: 716 TDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYV 775

Query: 549 PGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P TE+VL +++ EEKE +L  HSEKLA+A+GLI T   TTI+++K L +CGDCH+ +KY 
Sbjct: 776 PDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYI 835

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           SK+ +REIVLRD  RFH+F+DG CSC DYW
Sbjct: 836 SKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 216/475 (45%), Gaps = 65/475 (13%)

Query: 37  LIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           L+ ++ ST  L   +  HA+I++        ++  L++  S   S+  A  +FD    ++
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 94  LHIFNVLIRGLA-----ENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSL 147
           L  +N ++   A      + + Q  + H   +LR S+    R+T   V K   +   L  
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGL-HLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
             G+H   +K G+E+D FV   L ++Y + G+ R A  +FD   E++    V+LWN+++ 
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERD----VVLWNMMLK 257

Query: 208 GCSKIGYLRKAVELF------GMMPKK-------NVASWV-------------------- 234
           G  ++G  ++A +LF      G+ P +       N   W                     
Sbjct: 258 GYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGL 317

Query: 235 --------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                   SL++ + + G    A E+F  M    ++SW +MI+  +Q+   E+++ +F  
Sbjct: 318 DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFID 377

Query: 287 MLDAGVRANDFTVVS-----ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
           +L  G++ + FT+ S     A  AC  +  L+ G ++H +     F     + + ++DMY
Sbjct: 378 LLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMY 437

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            KCG++  A +VF      D + WT+MI G   +G  +QA++ + +M  S   PD   F 
Sbjct: 438 IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 497

Query: 402 AILTA--CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
            ++ A  C  + +    L+  + ++ D   +P V   T +V++ ++ G     Y+
Sbjct: 498 TLIKASSCVTALEQGRQLH-ANVIKLDCVSDPFVG--TSLVDMYAKCGNIEDAYR 549



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 156/354 (44%), Gaps = 53/354 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H   +   L +   +   L++  S      +A  +F+     +L  +N +I   A++
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 365

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVS-----KSVASLSLLSLGRGLHCLIVKSGVEY 162
           S  +  ++ F+ +L   ++P+  T   ++     K+   L LL  G+ +H   +K+G + 
Sbjct: 366 SLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFDS 425

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D  V   + DMY++ G    A  VF+     +     + W  +I+GC   G   +A+ ++
Sbjct: 426 DLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD----VAWTSMISGCVDNGNEDQALRIY 481

Query: 223 GMMPKKNV-------------ASWV--------------------------SLIDGFMRK 243
             M +  V             +S V                          SL+D + + 
Sbjct: 482 HRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKC 541

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G+++ A  LF++M  + +  W AM+ G +Q+G AE+A+ +F  M   G+  +  + +  L
Sbjct: 542 GNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGIL 601

Query: 304 SACAKVGAL-EAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVF 354
           SAC+  G   EA   +H+    ND+G++  I   + LVD   + G ++ A  V 
Sbjct: 602 SACSHAGLTSEAYEYLHSMP--NDYGIEPEIEHYSCLVDALGRAGLVQEADKVI 653



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 115/272 (42%), Gaps = 37/272 (13%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF-----SQNGEAEKALAMFFQMLD 289
           +L+  + + G L  A ++F+  PE+ +V+W A++  +     S +G A++ L +F  +  
Sbjct: 117 NLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRA 176

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           +       T+   L  C   G L A   VH Y           +  ALV++Y+KCG +  
Sbjct: 177 SLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRD 236

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A L+F   +E+D++ W  M+ G    G  ++A Q F +   SG  PD      IL  C +
Sbjct: 237 ARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLW 296

Query: 410 SGQVKLAL------------------------NFFDSMRFDYFIEP---SVKHHTVVV-- 440
           +G   L L                        N +  M   YF       +KH  ++   
Sbjct: 297 AGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWN 356

Query: 441 NLLSRVGQDSQGYQNSQNSFTKLLQ--LKPKH 470
           +++S   Q S   + S N F  LL   LKP H
Sbjct: 357 SMISSCAQSSLE-EESVNLFIDLLHEGLKPDH 387



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 122/282 (43%), Gaps = 16/282 (5%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q +QIHA  I     +   + + ++        +  A  +F++ +  +   +  +I G  
Sbjct: 410 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 469

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           +N +    +  +  M +  V P+  T+  + K+ + ++ L  GR LH  ++K     D F
Sbjct: 470 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 529

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L DMY + G    A+++F +   +N    + LWN ++ G ++ G   +AV LF  M
Sbjct: 530 VGTSLVDMYAKCGNIEDAYRLFKKMNVRN----IALWNAMLVGLAQHGNAEEAVNLFKSM 585

Query: 226 PKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGE 276
               +     S++ ++      G   +A E    MP     E  +  ++ +++   + G 
Sbjct: 586 KSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 645

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
            ++A  +   M     +A+     + L AC   G +E G RV
Sbjct: 646 VQEADKVIETM---PFKASASINRALLGACRIQGDVETGKRV 684



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 4/190 (2%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q RQ+HA +I  +  +   + T L+   +   +I+ A  +F     +N+ ++N ++ GL
Sbjct: 510 EQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGL 569

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
           A++ + +  ++ F  M    + P+R+++  +  + +   L S     LH +    G+E +
Sbjct: 570 AQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPE 629

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS--ESVLLWNVLINGCSKIGYLRKAVEL 221
                 L D   + G  + A KV +  P K  +     LL    I G  + G  R A  L
Sbjct: 630 IEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGK-RVAARL 688

Query: 222 FGMMPKKNVA 231
           F + P  + A
Sbjct: 689 FALEPFDSAA 698


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  364 bits (935), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 211/630 (33%), Positives = 346/630 (54%), Gaps = 79/630 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +NL  + ++I   A+    +  I  F+ M      P+R TY  V  +   
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
           L LL+LG+ LH  +++ G+  D  V   L DMY +    G    + KVF++ PE N    
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 119

Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
           V+ W  +I   ++ G   K A+ELF  M                            + V 
Sbjct: 120 VMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 179

Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           S+              SLI  + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 180 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 239

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A  +F ++ D G+  + FT  S LS  A +GA+  G ++H  +    +     I  AL+
Sbjct: 240 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 299

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CGNIEAA  VF E +++++++WT+MI G A HG   +A++ F KM+ +GT+P+  
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 359

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS 456
            ++A+L+AC + G +      F+SM  ++ I P ++H+  +V+LL R G   ++  + NS
Sbjct: 360 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 419

Query: 457 --------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +++   +L+ +P  P++Y+LLSN++A+ G+WKDV
Sbjct: 420 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 479

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
            ++R  M+ R++ K+ G S+IEV   VHRF  G   H  A +I+ +L+ + +  +E GY+
Sbjct: 480 VKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 539

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P T++VLH+I+EE KE+ L  HSEK+A+AFGLI T+    I+I K L +CGDCH+ +KY 
Sbjct: 540 PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYI 599

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S  + REIV+RD+ RFH+ K+G CSC DYW
Sbjct: 600 SMATGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/464 (23%), Positives = 203/464 (43%), Gaps = 44/464 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q+H+++I   L     +   L+   +  +   S+D +  +F+     N+  +  +I   
Sbjct: 71  KQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAY 130

Query: 105 AENSHF-QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           A++    +  I  F  M+   +RPN  ++  V K+  +LS    G  ++   VK G+   
Sbjct: 131 AQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASV 190

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLWN---- 203
             V   L  MY + G+   A K FD   EKN                  E+ LL+N    
Sbjct: 191 NCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIAD 250

Query: 204 -----------VLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKK 248
                       L++G + IG + K  ++ G + K     N     +LI  + R G+++ 
Sbjct: 251 TGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEA 310

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F +M ++ V+SWT+MI GF+++G A +AL MF +ML+ G + N+ T V+ LSAC+ 
Sbjct: 311 AFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSH 370

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG-NIEAASLVFGETKEKDLLTW 365
           VG +  G +  N +   + G+   +     +VD+  + G  +EA   +       D L W
Sbjct: 371 VGMISEGQKHFNSMY-KEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVW 429

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             ++    +HG  E   ++  +M+      D   ++ +      +GQ K  +    SM+ 
Sbjct: 430 RTLLGACRVHGNTELG-RHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKE 488

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469
              I+ +      V N + R       +  +   + +L QL  K
Sbjct: 489 RNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASK 532



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 153/368 (41%), Gaps = 17/368 (4%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     + S H   N+ + + ++    + +      Q+++  +   + + + +   LIS
Sbjct: 140 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 199

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +    ++ A   FD    KNL  +N ++ G A+N   +     F  +    +  +  T
Sbjct: 200 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 259

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  +    AS+  +  G  +H  ++K G + +  +   L  MY + G    AF+VF+E  
Sbjct: 260 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 319

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
           ++N    V+ W  +I G +K G+  +A+E+F  M     K N  ++V+++      G + 
Sbjct: 320 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 375

Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           +  + F  M  E G+V     +  M++   ++G   +A+     M    + A+     + 
Sbjct: 376 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 432

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L AC   G  E G      I   +     A    L +++A  G  +    +    KE++L
Sbjct: 433 LGACRVHGNTELGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNL 491

Query: 363 LTWTAMIW 370
           +      W
Sbjct: 492 IKEAGCSW 499


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 224/733 (30%), Positives = 368/733 (50%), Gaps = 130/733 (17%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++ L   S +  Q +++H  I+       + ++  LI++     ++ YA  +FDH    N
Sbjct: 11  LLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPN 70

Query: 94  L--------------------HIFNVL-----------IRGLAENSHFQSCISHFVFMLR 122
           L                     IFN++           I G A        +  +  ML+
Sbjct: 71  LFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLK 130

Query: 123 -LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
             ++  NR+T+  +    +    + LGR ++  I+K G   D FV   L DMY +LG   
Sbjct: 131 DAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIY 190

Query: 182 GAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSKIGY 214
            A + FDE PE+N                           K    + W ++I G  + G 
Sbjct: 191 DAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGL 250

Query: 215 LRKAVELFGMMP---------------------------------------KKNVASWVS 235
            R+A+++F  M                                        K NV    +
Sbjct: 251 EREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSA 310

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+D + +   +K A  +F++MP+K V+SWTAM+ G+ QNG +E+A+ +FF+M   GV  +
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPD 370

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           DFT+ S +S+CA + +LE G + H     +       +  AL+ +Y KCG+ E +  +F 
Sbjct: 371 DFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFT 430

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E   +D ++WTA++ G A  G+  + I  F++M+  G +PDG  F+ +L+AC  +G V+ 
Sbjct: 431 EMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEK 490

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQN--------------- 458
            L +F+SM  ++ I P V H T +++LL R G  ++++ + N+                 
Sbjct: 491 GLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSC 550

Query: 459 -----------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                      +   L+ L+P++P+SYVLLS++YA++G+W  VA++R  M+ + ++K+PG
Sbjct: 551 RVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPG 610

Query: 508 WSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEE 564
           +S+I+  G VH F A         +I+++LE +     E+GY+P    VLH+++E EK +
Sbjct: 611 YSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIK 670

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            L  HSEKLA+AFGLI   PG  I+++K L +CGDCH+  K+ SKI+QREI++RD  RFH
Sbjct: 671 MLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFH 730

Query: 624 YFKDGTCSCRDYW 636
            FKDGTCSC D+W
Sbjct: 731 LFKDGTCSCGDFW 743


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  364 bits (934), Expect = 8e-98,   Method: Compositional matrix adjust.
 Identities = 212/573 (36%), Positives = 315/573 (54%), Gaps = 67/573 (11%)

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N LI G   +  F+     FV M+R S     +TY  V  +      L LG  +H  +
Sbjct: 128 MWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           ++SGV  D  V   L DMY + G    A+                               
Sbjct: 188 LESGVLPDQRVENALVDMYAECGDMDAAWV------------------------------ 217

Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                LF  M  +++ASW S+I G +R G + +A +LF+ MPE+  ++WTAMI+G+ Q G
Sbjct: 218 -----LFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVG 272

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
               AL  F  M    VRA++FT+VS ++ACA++GALE G     Y+      +   +G 
Sbjct: 273 RFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGN 332

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+DMY+KCG+IE A  VF +   +D  TWTA+I GLA++GR E+AI  F +M+ +   P
Sbjct: 333 ALIDMYSKCGSIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTP 392

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--- 452
           D   F+ +LTAC ++G V     FF SM   Y I P+V H+  ++++L R G+  +    
Sbjct: 393 DEVTFVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDT 452

Query: 453 ----------------------YQNSQN---SFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                 Y NS+    +  +LL+L P + ++Y+LLSN+YA   RW
Sbjct: 453 IDKMPMKPNSTIWGTLLASCRVYGNSEIGELAAERLLELDPDNSTAYILLSNMYAKSNRW 512

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
           KDV R+R ++  + IKK+PG S IE+NG +H F A    H + KEI+SKLE+++   R  
Sbjct: 513 KDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHEFVAADRSHPMNKEIYSKLENVLTDLRNA 572

Query: 546 GYMPG-TEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY+P  TE ++   +EEK++ L  HSEKLA+ F L+ +     I+IVK L +C DCH+ +
Sbjct: 573 GYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVTFALLTSESNVIIRIVKNLRMCLDCHNAI 632

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  SK+  RE+++RD TRFH+F+ G+CSC+DYW
Sbjct: 633 KLISKLYGREVIVRDRTRFHHFRHGSCSCKDYW 665



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 89/177 (50%), Gaps = 9/177 (5%)

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           V W A+I+G +++G  E +   F  M+ A   A   T VS LSAC K   L  G++VH  
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMATAVTYVSVLSACGKGKDLLLGMQVHKR 186

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +  +       +  ALVDMYA+CG+++AA ++F   + + + +WT++I GL   G+ ++A
Sbjct: 187 VLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRA 246

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-----RFDYFIEPSV 433
              F  M     E D   + A++      G+ + AL  F  M     R D F   SV
Sbjct: 247 RDLFDHM----PERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRADEFTMVSV 299



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/258 (23%), Positives = 108/258 (41%), Gaps = 16/258 (6%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +IS       +D A  +FDH   ++   +  +I G  +   F+  +  F +M    VR
Sbjct: 231 TSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVR 290

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            +  T   V  + A L  L  G      + + G++ D FV   L DMY + G    A  V
Sbjct: 291 ADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDV 350

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMR 242
           F +   ++K      W  +I G +  G   +A+++F  M +     +  ++V ++     
Sbjct: 351 FKDMHNRDK----FTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTH 406

Query: 243 KGDLKKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G + K  E F  M E       VV +  +I+   + G+ ++AL    +M    ++ N  
Sbjct: 407 AGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKM---PMKPNST 463

Query: 298 TVVSALSACAKVGALEAG 315
              + L++C   G  E G
Sbjct: 464 IWGTLLASCRVYGNSEIG 481


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  363 bits (933), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 204/587 (34%), Positives = 320/587 (54%), Gaps = 69/587 (11%)

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           ++F+ +  K N+  +N +I  LA +      +  F  M +LS++PNR T+P   KS ++L
Sbjct: 30  TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 89

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             L  GR  H   +  G E D FV   L DMY                            
Sbjct: 90  LDLHSGRQAHQQALIFGFEPDLFVSSALVDMY---------------------------- 121

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                  SK G LR A  LF  +  +N+ SW S+I G+++  D  +A  +F+ M E+ V+
Sbjct: 122 -------SKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVI 174

Query: 263 SWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           SW ++I  ++QNG + +++ +F +M+ D  +  N  T+ + L ACA  G+   G  +H+ 
Sbjct: 175 SWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQ 234

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +          +GT+++DMY KCG +E A   F   +EK++ +W+AM+ G  +HG  ++A
Sbjct: 235 VIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEA 294

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           ++ F +M  +G +P+   F+++L AC ++G ++   ++F +M  ++ +EP V+H+  +V+
Sbjct: 295 LEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVD 354

Query: 442 LLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSS 473
           LL R G   + +                               + S  KL +L PK+   
Sbjct: 355 LLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGY 414

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEI 531
           YVLLSNIYA  GRW+DV R+R LM+   + K PG+S +++ G VH F  G   H   ++I
Sbjct: 415 YVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKI 474

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
           +  LE +    +E GY+P    VLH++  EEKE  L  HSEKLA+AFG++ T PGTTI I
Sbjct: 475 YEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHI 534

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K L +CGDCH+ +K+ SKI  REIV+RD+ RFH+F+DG CSC DYW
Sbjct: 535 IKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 121/301 (40%), Gaps = 50/301 (16%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ H Q ++        +++ L+   S    +  A ++FD  + +N+  +  +I G  +N
Sbjct: 96  RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 155

Query: 108 SHFQSCISHFVFMLRLS---------------------------VRPNRLTYPFVSKSVA 140
                 +  F  M                               V+   + Y  V+ S  
Sbjct: 156 DDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 215

Query: 141 SLSLL-----SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
            L+        LG+ +H  ++K G+E + FV   + DMY + GK   A K FD   EKN 
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKN- 274

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGE 251
              V  W+ ++ G    G+ ++A+E+F  M     K N  ++VS++      G L++   
Sbjct: 275 ---VKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWH 331

Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA-LSA 305
            F+ M      E GV  +  M++   + G  ++A    F ++       DF V  A L A
Sbjct: 332 WFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA----FDLIKGMKLRPDFVVWGALLGA 387

Query: 306 C 306
           C
Sbjct: 388 C 388



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 19/254 (7%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K      N +T + ++     S S +  + IH Q+I   L ++  + T +I        
Sbjct: 200 VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGK 259

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A   FD    KN+  ++ ++ G   + H +  +  F  M    V+PN +T+  V  +
Sbjct: 260 VEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 319

Query: 139 VASLSLLSLG----RGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
            +   LL  G    + + H   V+ GVE       H   M   LG+     + FD     
Sbjct: 320 CSHAGLLEEGWHWFKAMSHEFDVEPGVE-------HYGCMVDLLGRAGYLKEAFDLIKGM 372

Query: 194 NKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
                 ++W  L+  C       +G +  A +LF + P KN   +V L + +   G  + 
Sbjct: 373 KLRPDFVVWGALLGACRMHKNVDLGEI-SARKLFELDP-KNCGYYVLLSNIYADAGRWED 430

Query: 249 AGELFEQMPEKGVV 262
              +   M   G+V
Sbjct: 431 VERMRILMKNSGLV 444


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  363 bits (932), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 213/630 (33%), Positives = 335/630 (53%), Gaps = 85/630 (13%)

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
           +F   +++ +N LI  LA        +  F +M +L ++PNR T+P   KS ++L  L+ 
Sbjct: 41  YFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALFDLNS 100

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+  H   +  G E D FV   L DMY + GK   A  +FDE P +N    ++ W  LI 
Sbjct: 101 GKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRN----IVTWTSLIT 156

Query: 208 GCSKIGYLRKAVELF----------------------GMMPKKNVASWVS---------- 235
           G  +     +A+ +F                       M+   +  S VS          
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 236 ----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                           L+D + + G++  + ++F+ M EK VVSW +MI  ++QNG +  
Sbjct: 217 VAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTD 276

Query: 280 ALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           A  +F  ML AG  + N+ T+ + L ACA  GAL  G+ +H+ +    +     + T+++
Sbjct: 277 AFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSII 336

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMY KCG  E A   F   KEK++ +WTAMI G  +HG   +A+  F +M+++G +P+  
Sbjct: 337 DMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYI 396

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----- 453
            F+++L AC ++G ++    +F++M  +Y +EP V+H+  +V+LL R G   + Y     
Sbjct: 397 TFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKS 456

Query: 454 -----------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                  + ++ S  +L +L P +   YVLL+NIYA  GRWKDV
Sbjct: 457 MKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKDV 516

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYM 548
            R+R L++ R + K PG+S +E+ G VH F  G   H   ++I+  LE++    +E GY+
Sbjct: 517 ERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGYV 576

Query: 549 PGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P    VLH++ +EEKE  +  HSEKLA+AFG++ + PG+TI ++K L +CGDCH+++K  
Sbjct: 577 PNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKLI 636

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           SKI  REI++RD  RFH+FKDG CSC DYW
Sbjct: 637 SKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/630 (33%), Positives = 345/630 (54%), Gaps = 79/630 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +NL  + ++I   A+    +  I  F+ M      P+R TY  V  +   
Sbjct: 202 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 261

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
           L LL+LG+ LH  +++ G+  D  V   L DMY +    G    + KVF++ PE N    
Sbjct: 262 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 317

Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
           V+ W  +I    + G   K A+ELF  M                            + V 
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           S+              SLI  + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 378 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A  +F ++ D G+  + FT  S LS  A +GA+  G ++H  +    +     I  AL+
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 497

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CGNIEAA  VF E +++++++WT+MI G A HG   +A++ F KM+ +GT+P+  
Sbjct: 498 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 557

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS 456
            ++A+L+AC + G +      F+SM  ++ I P ++H+  +V+LL R G   ++  + NS
Sbjct: 558 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 617

Query: 457 --------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +++   +L+ +P  P++Y+LLSN++A+ G+WKDV
Sbjct: 618 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 677

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
            ++R  M+ R++ K+ G S+IEV   VHRF  G   H  A +I+ +L+ + +  +E GY+
Sbjct: 678 VKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 737

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P T++VLH+I+EE KE+ L  HSEK+A+AFGLI T+    I+I K L +CGDCH+ +KY 
Sbjct: 738 PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYI 797

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S  + REIV+RD+ RFH+ K+G CSC DYW
Sbjct: 798 SMATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 106/403 (26%), Positives = 191/403 (47%), Gaps = 50/403 (12%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAENS 108
           +H +++   L   S +   LIS  S     + A  IF+     ++L  ++ ++   A NS
Sbjct: 66  VHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNS 125

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVR 167
                I  F+ ML L   PN   +  V ++ ++ +   +G  ++  +VK+G +E D  V 
Sbjct: 126 MEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVG 185

Query: 168 VHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
             L DM+V+  G    A+KVFD+ PE+N    ++ W ++I   +++G  R A++LF    
Sbjct: 186 CELIDMFVKGSGDLGSAYKVFDKMPERN----LVTWTLMITRFAQLGCARDAIDLFLDME 241

Query: 223 --GMMPKK---------------------------------NVASWVSLIDGFMR---KG 244
             G +P +                                 +V    SL+D + +    G
Sbjct: 242 LSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADG 301

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVRANDFTVVSAL 303
            +  + ++FEQMPE  V+SWTA+I  + Q+GE +K A+ +F +M+   +R N F+  S L
Sbjct: 302 SVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVL 361

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            AC  +     G +V++Y           +G +L+ MYA+ G +E A   F    EK+L+
Sbjct: 362 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLV 421

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           ++ A++ G A + + E+A   F ++  +G       F ++L+ 
Sbjct: 422 SYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 464



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 163/352 (46%), Gaps = 43/352 (12%)

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LIR L +        S    M + +  P+  TY  + KS        LG+ +H  +++
Sbjct: 14  NRLIRQL-DVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQ 72

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK---------------NKSESVLLW 202
           SG+E D+ V   L  +Y + G T  A  +F+    K               N  E   +W
Sbjct: 73  SGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIW 132

Query: 203 NVL-----------------INGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGF 240
             L                 I  CS   Y      ++G + K      +V     LID F
Sbjct: 133 TFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMF 192

Query: 241 MR-KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           ++  GDL  A ++F++MPE+ +V+WT MI  F+Q G A  A+ +F  M  +G   + FT 
Sbjct: 193 VKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTY 252

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC---GNIEAASLVFGE 356
            S LSAC ++G L  G ++H+ +      L   +G +LVDMYAKC   G+++ +  VF +
Sbjct: 253 SSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQ 312

Query: 357 TKEKDLLTWTAMIWGLAIHGRYE-QAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             E ++++WTA+I      G  + +AI+ F KM+     P+   F ++L AC
Sbjct: 313 MPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC 364



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 7/249 (2%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG--YLRKAVELFGMMPKKNVAS 232
           + +G+   AF   D   ++N    +  +++L+  C +     L K V    M     + S
Sbjct: 20  LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDS 79

Query: 233 WV--SLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
            V  +LI  + + GD + A  +FE M  K  +VSW+AM++ F+ N    +A+  F  ML+
Sbjct: 80  VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 139

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAK-CGNI 347
            G   N++   + + AC+       G  ++ ++    +      +G  L+DM+ K  G++
Sbjct: 140 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 199

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +A  VF +  E++L+TWT MI   A  G    AI  F  M  SG  PD   + ++L+AC
Sbjct: 200 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259

Query: 408 WYSGQVKLA 416
              G + L 
Sbjct: 260 TELGLLALG 268



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 135/313 (43%), Gaps = 16/313 (5%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     + S H   N+ + + ++    + +      Q+++  +   + + + +   LIS
Sbjct: 338 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 397

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +    ++ A   FD    KNL  +N ++ G A+N   +     F  +    +  +  T
Sbjct: 398 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 457

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  +    AS+  +  G  +H  ++K G + +  +   L  MY + G    AF+VF+E  
Sbjct: 458 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 517

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
           ++N    V+ W  +I G +K G+  +A+E+F  M     K N  ++V+++      G + 
Sbjct: 518 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 573

Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           +  + F  M  E G+V     +  M++   ++G   +A+     M    + A+     + 
Sbjct: 574 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 630

Query: 303 LSACAKVGALEAG 315
           L AC   G  E G
Sbjct: 631 LGACRVHGNTELG 643


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 211/630 (33%), Positives = 345/630 (54%), Gaps = 79/630 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +NL  + ++I   A+    +  I  F+ M      P+R TY  V  +   
Sbjct: 184 AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 243

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
           L LL+LG+ LH  +++ G+  D  V   L DMY +    G    + KVF++ PE N    
Sbjct: 244 LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN---- 299

Query: 199 VLLWNVLINGCSKIGYLRK-AVELFGMM--------------------------PKKNVA 231
           V+ W  +I    + G   K A+ELF  M                            + V 
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 232 SWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           S+              SLI  + R G ++ A + F+ + EK +VS+ A+++G+++N ++E
Sbjct: 360 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A  +F ++ D G+  + FT  S LS  A +GA+  G ++H  +    +     I  AL+
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALI 479

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CGNIEAA  VF E +++++++WT+MI G A HG   +A++ F KM+ +GT+P+  
Sbjct: 480 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 539

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS 456
            ++A+L+AC + G +      F+SM  ++ I P ++H+  +V+LL R G   ++  + NS
Sbjct: 540 TYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINS 599

Query: 457 --------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +++   +L+ +P  P++Y+LLSN++A+ G+WKDV
Sbjct: 600 MPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDV 659

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
            ++R  M+ R++ K+ G S+IEV   VHRF  G   H  A +I+ +L+ + +  +E GY+
Sbjct: 660 VKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYI 719

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P T++VLH+I+EE KE+ L  HSEK+A+AFGLI T+    I+I K L +CGDCH+ +KY 
Sbjct: 720 PDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYI 779

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S  + REIV+RD+ RFH+ K+G CSC DYW
Sbjct: 780 SMATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/405 (26%), Positives = 192/405 (47%), Gaps = 50/405 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAE 106
           + +H +++   L   S +   LIS  S     + A  IF+     ++L  ++ ++   A 
Sbjct: 46  KLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFAN 105

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAF 165
           NS     I  F+ ML L   PN   +  V ++ ++ +   +G  ++  +VK+G +E D  
Sbjct: 106 NSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVC 165

Query: 166 VRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-- 222
           V   L DM+V+  G    A+KVFD+ PE+N    ++ W ++I   +++G  R A++LF  
Sbjct: 166 VGCELIDMFVKGSGDLGSAYKVFDKMPERN----LVTWTLMITRFAQLGCARDAIDLFLD 221

Query: 223 ----GMMPKK---------------------------------NVASWVSLIDGFMR--- 242
               G +P +                                 +V    SL+D + +   
Sbjct: 222 MELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAA 281

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVRANDFTVVS 301
            G +  + ++FEQMPE  V+SWTA+I  + Q+GE +K A+ +F +M+   +R N F+  S
Sbjct: 282 DGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSS 341

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L AC  +     G +V++Y           +G +L+ MYA+ G +E A   F    EK+
Sbjct: 342 VLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKN 401

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           L+++ A++ G A + + E+A   F ++  +G       F ++L+ 
Sbjct: 402 LVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSG 446



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 185/406 (45%), Gaps = 50/406 (12%)

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
            M + +  P+  TY  + KS        LG+ +H  +++SG+E D+ V   L  +Y + G
Sbjct: 16  LMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCG 75

Query: 179 KTRGAFKVFDETPEK---------------NKSESVLLWNVL-----------------I 206
            T  A  +F+    K               N  E   +W  L                 I
Sbjct: 76  DTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVI 135

Query: 207 NGCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGFMR-KGDLKKAGELFEQMPEKG 260
             CS   Y      ++G + K      +V     LID F++  GDL  A ++F++MPE+ 
Sbjct: 136 RACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERN 195

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V+WT MI  F+Q G A  A+ +F  M  +G   + FT  S LSAC ++G L  G ++H+
Sbjct: 196 LVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHS 255

Query: 321 YISCNDFGLKGAIGTALVDMYAKC---GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
            +      L   +G +LVDMYAKC   G+++ +  VF +  E ++++WTA+I      G 
Sbjct: 256 RVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGE 315

Query: 378 YE-QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
            + +AI+ F KM+     P+   F ++L AC       L+  +     + Y ++  +   
Sbjct: 316 CDKEAIELFCKMISGHIRPNHFSFSSVLKACG-----NLSDPYTGEQVYSYAVKLGIASV 370

Query: 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
             V N L  +   S   ++++ +F  L +   K+  SY  + + YA
Sbjct: 371 NCVGNSLISMYARSGRMEDARKAFDILFE---KNLVSYNAIVDGYA 413



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 119/249 (47%), Gaps = 7/249 (2%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG--YLRKAVELFGMMPKKNVAS 232
           + +G+   AF   D   ++N    +  +++L+  C +     L K V    M     + S
Sbjct: 2   LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDS 61

Query: 233 WV--SLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
            V  +LI  + + GD + A  +FE M  K  +VSW+AM++ F+ N    +A+  F  ML+
Sbjct: 62  VVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLE 121

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAK-CGNI 347
            G   N++   + + AC+       G  ++ ++    +      +G  L+DM+ K  G++
Sbjct: 122 LGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDL 181

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +A  VF +  E++L+TWT MI   A  G    AI  F  M  SG  PD   + ++L+AC
Sbjct: 182 GSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241

Query: 408 WYSGQVKLA 416
              G + L 
Sbjct: 242 TELGLLALG 250



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 135/313 (43%), Gaps = 16/313 (5%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     + S H   N+ + + ++    + +      Q+++  +   + + + +   LIS
Sbjct: 320 AIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLIS 379

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +    ++ A   FD    KNL  +N ++ G A+N   +     F  +    +  +  T
Sbjct: 380 MYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFT 439

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  +    AS+  +  G  +H  ++K G + +  +   L  MY + G    AF+VF+E  
Sbjct: 440 FASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEME 499

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLK 247
           ++N    V+ W  +I G +K G+  +A+E+F  M     K N  ++V+++      G + 
Sbjct: 500 DRN----VISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMIS 555

Query: 248 KAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           +  + F  M  E G+V     +  M++   ++G   +A+     M    + A+     + 
Sbjct: 556 EGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTL 612

Query: 303 LSACAKVGALEAG 315
           L AC   G  E G
Sbjct: 613 LGACRVHGNTELG 625


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 221/633 (34%), Positives = 328/633 (51%), Gaps = 78/633 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L+S    +  I+ A  +FD    +N+  +  ++RG  +        + F  M   +V   
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV--- 222

Query: 129 RLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
                 VS +V    LL  GR    C +     E D   R ++   Y Q+G+   A  +F
Sbjct: 223 ------VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           DE P +N    V+ W  +I G  +   +  A +LF +MP+KN  SW +++ G+   G L 
Sbjct: 277 DEMPRRN----VVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLD 332

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-------------------- 287
           +A ELF  MP K VV+  AMI  F QNGE  KA  +F QM                    
Sbjct: 333 EASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392

Query: 288 -LDA----------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            LDA          G+R N  +++S LS CA +  L+ G  +H  +  + F L   + + 
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASV 452

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ MY KCGN+  A  VF     KD++ W ++I G A HG   +A++ F  M +SG  PD
Sbjct: 453 LLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD 512

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN- 455
              F+ +L+AC Y+G VK  L  F+SM   Y +E  ++H+  +V+LL R G+ ++     
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 456 ---------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                                      ++ +  KLL L+PK+   ++LLSNIYA++GRW 
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWD 632

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIHSKLEDIMAGAREQ 545
           DVA +R  M+ R + K PG S+I V   VH+F  G   GH    EI+  LE +    RE 
Sbjct: 633 DVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREA 692

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P   +VLH++ +EEK ++L  HSEKLA+A+GL++   G  I+++K L +CGDCH+ +
Sbjct: 693 GYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAI 752

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  +K++ REI+LRD  RFH+FKDG+CSCRDYW
Sbjct: 753 KLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 178/371 (47%), Gaps = 35/371 (9%)

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
           R  L   Y +LG+   A  VFDE  +KN    ++ WN ++ G  +    ++A  +F  M 
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKN----IISWNSIVAGYFQNKRPQEAQNMFDKMS 156

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           ++N  SW  L+ G++  G + +A E+F++MPE+ VVSWTAM+ G+ + G   +A  +F+Q
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M +  V +  +TV+  L    + G ++   R+ + +   D   +    T ++  Y + G 
Sbjct: 217 MPEKNVVS--WTVM--LGGLLQEGRIDEACRLFDMMPEKDVVTR----TNMIGGYCQVGR 268

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +  A ++F E   +++++WT MI G   + + + A + F ++M    E   T  L   T 
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF-EVMPEKNEVSWTAMLKGYTN 327

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466
           C   G++  A   F++M         +K       ++   GQ+ +    ++  F    Q+
Sbjct: 328 C---GRLDEASELFNAM--------PIKSVVACNAMILCFGQNGE-VPKARQVFD---QM 372

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD-PGW-SYIEVNGHVHRFEAGG 524
           + K   ++  +  +Y  +G   D   +  +MQR  I+ + P   S + V   +   + G 
Sbjct: 373 REKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG- 431

Query: 525 HKLAKEIHSKL 535
               +EIH++L
Sbjct: 432 ----REIHAQL 438



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 15/222 (6%)

Query: 48  RQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           R+IHAQ++      +++ +S + +  I   +L K    A  +FD F  K++ ++N +I G
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAK----AKQVFDRFAVKDVVMWNSIITG 487

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEY 162
            A++      +  F  M    + P+ +T+  V  + +    +  G  + + +  K  VE 
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAV 219
                  + D+  + GK   A  + ++ P +  +   ++W  L+  C    K+     A 
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA---IIWGALLGACRTHMKLDLAEVAA 604

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   ++  KN   ++ L + +  +G      EL   M ++ V
Sbjct: 605 KKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  363 bits (931), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 221/633 (34%), Positives = 328/633 (51%), Gaps = 78/633 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L+S    +  I+ A  +FD    +N+  +  ++RG  +        + F  M   +V   
Sbjct: 166 LVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNV--- 222

Query: 129 RLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
                 VS +V    LL  GR    C +     E D   R ++   Y Q+G+   A  +F
Sbjct: 223 ------VSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLF 276

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           DE P +N    V+ W  +I G  +   +  A +LF +MP+KN  SW +++ G+   G L 
Sbjct: 277 DEMPRRN----VVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLD 332

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-------------------- 287
           +A ELF  MP K VV+  AMI  F QNGE  KA  +F QM                    
Sbjct: 333 EASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGL 392

Query: 288 -LDA----------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            LDA          G+R N  +++S LS CA +  L+ G  +H  +  + F L   + + 
Sbjct: 393 ELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASV 452

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ MY KCGN+  A  VF     KD++ W ++I G A HG   +A++ F  M +SG  PD
Sbjct: 453 LLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPD 512

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN- 455
              F+ +L+AC Y+G VK  L  F+SM   Y +E  ++H+  +V+LL R G+ ++     
Sbjct: 513 DVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLI 572

Query: 456 ---------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                                      ++ +  KLL L+PK+   ++LLSNIYA++GRW 
Sbjct: 573 EKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWD 632

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIHSKLEDIMAGAREQ 545
           DVA +R  M+ R + K PG S+I V   VH+F  G   GH    EI+  LE +    RE 
Sbjct: 633 DVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREA 692

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P   +VLH++ +EEK ++L  HSEKLA+A+GL++   G  I+++K L +CGDCH+ +
Sbjct: 693 GYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAI 752

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  +K++ REI+LRD  RFH+FKDG+CSCRDYW
Sbjct: 753 KLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 178/371 (47%), Gaps = 35/371 (9%)

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
           R  L   Y +LG+   A  VFDE  +KN    ++ WN ++ G  +    ++A  +F  M 
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKN----IISWNSIVAGYFQNKRPQEAQNMFDKMS 156

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           ++N  SW  L+ G++  G + +A E+F++MPE+ VVSWTAM+ G+ + G   +A  +F+Q
Sbjct: 157 ERNTISWNGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQ 216

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M +  V +  +TV+  L    + G ++   R+ + +   D   +    T ++  Y + G 
Sbjct: 217 MPEKNVVS--WTVM--LGGLLQEGRIDEACRLFDMMPEKDVVTR----TNMIGGYCQVGR 268

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +  A ++F E   +++++WT MI G   + + + A + F ++M    E   T  L   T 
Sbjct: 269 LVEARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLF-EVMPEKNEVSWTAMLKGYTN 327

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466
           C   G++  A   F++M         +K       ++   GQ+ +    ++  F    Q+
Sbjct: 328 C---GRLDEASELFNAM--------PIKSVVACNAMILCFGQNGE-VPKARQVFD---QM 372

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD-PGW-SYIEVNGHVHRFEAGG 524
           + K   ++  +  +Y  +G   D   +  +MQR  I+ + P   S + V   +   + G 
Sbjct: 373 REKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHG- 431

Query: 525 HKLAKEIHSKL 535
               +EIH++L
Sbjct: 432 ----REIHAQL 438



 Score = 42.7 bits (99), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 45/222 (20%), Positives = 96/222 (43%), Gaps = 15/222 (6%)

Query: 48  RQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           R+IHAQ++      +++ +S + +  I   +L K    A  +FD F  K++ ++N +I G
Sbjct: 432 REIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAK----AKQVFDRFAVKDVVMWNSIITG 487

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEY 162
            A++      +  F  M    + P+ +T+  V  + +    +  G  + + +  K  VE 
Sbjct: 488 YAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQ 547

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAV 219
                  + D+  + GK   A  + ++ P +  +   ++W  L+  C    K+     A 
Sbjct: 548 KIEHYACMVDLLGRAGKLNEAMDLIEKMPMEADA---IIWGALLGACRTHMKLDLAEVAA 604

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   ++  KN   ++ L + +  +G      EL   M ++ V
Sbjct: 605 KKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRRNMRDRRV 646


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 220/670 (32%), Positives = 342/670 (51%), Gaps = 75/670 (11%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           + + ++ K L  +HA  I+    ++  + + L+        + YA  +FD    ++  ++
Sbjct: 118 VAACSNDKHLMLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLW 177

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N +I GL +N  F   I  F  M+   VR +  T   V  + A L  L +G G+ CL +K
Sbjct: 178 NTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALK 237

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
            G  +  +V   L  +Y + G    A  +F     +     ++ +N +I+G +  G    
Sbjct: 238 IGFGFCDYVLTGLISLYSKCGDVNTARLLF----RRINRPDLIAYNAMISGFTANGGTEC 293

Query: 218 AVELF----------------GMMPKKNVASWVSL---IDGFMRK--------------- 243
           +V+LF                G++P  +    + L   I GF  K               
Sbjct: 294 SVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTA 353

Query: 244 -----GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
                 ++  A  LF++ PEK VV+W AMI+G++QNG  E A+++F +M+      N  T
Sbjct: 354 IYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVT 413

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           + + LSACA++G+L  G  VH+ I   +      + TALVDMYAKCGNI  A  +F    
Sbjct: 414 ITTILSACAQLGSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS 473

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           EK+ +TW  MI+G  +HG   +A++ + +M++ G  P    FL++L AC ++G V     
Sbjct: 474 EKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEE 533

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------- 455
            F +M   Y IEP ++H+  +V++L R GQ  +  +                        
Sbjct: 534 IFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIH 593

Query: 456 -----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                ++ +  +L +L P     YVLLSNIY+ E  +   A +R ++++R + K PG + 
Sbjct: 594 KDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTL 653

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALG 567
           IEVNG  H F +G   H  A +I++KLE +    RE GY   T   LH++ +EEKE A+ 
Sbjct: 654 IEVNGTPHVFVSGDRSHSHATDIYAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVN 713

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLA+AFGLI T PG  I+I+K L +C DCH+  K+ SKI++R IV+RD  RFH+FK
Sbjct: 714 VHSEKLAIAFGLITTEPGNEIRIIKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFK 773

Query: 627 DGTCSCRDYW 636
           DG CSC DYW
Sbjct: 774 DGICSCGDYW 783



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/474 (26%), Positives = 218/474 (45%), Gaps = 58/474 (12%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLIS-SASLHKSID 80
           S  ++   + SLI+ +++   L Q HAQ IL+    +L   +++T +L   SA+ H    
Sbjct: 7   SGKLSRNTLFSLINKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRH---- 62

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSV 139
            A ++F      ++ +FNVL+RG + N    S IS +  + R  ++ P+  TY F   + 
Sbjct: 63  -ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAAC 121

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           ++   L L   LH   +  G   + FV   L D+Y +  +   A KVFD  PE++     
Sbjct: 122 SNDKHLML---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERD----T 174

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNV---ASWVS--------------------- 235
           +LWN +ING  K      +++LF  M    V   +S V+                     
Sbjct: 175 VLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCL 234

Query: 236 ---------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                          LI  + + GD+  A  LF ++    ++++ AMI+GF+ NG  E +
Sbjct: 235 ALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECS 294

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           + +F ++L +G R +  T+V  +   +  G L     +H +   +   L   + TA   +
Sbjct: 295 VKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAI 354

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y K   I+ A  +F E+ EK ++ W AMI G   +G  E AI  FK+MM +   P+    
Sbjct: 355 YNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTI 414

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
             IL+AC   G +         ++ +  +EP++   T +V++ ++ G  S+ +Q
Sbjct: 415 TTILSACAQLGSLSFGKWVHHLIKSEN-LEPNIYVSTALVDMYAKCGNISEAWQ 467


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  362 bits (930), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 209/611 (34%), Positives = 318/611 (52%), Gaps = 79/611 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +NV +R LA  S F   IS +  MLR    P+  ++PF+ KS ASLSL   G+ LHC + 
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS------ 210
           K G E + FV   L  MY + G    A KVF+E P+   S+  + +N LI+G +      
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQS--SQLSVCYNALISGYTANSKVT 138

Query: 211 ----------KIGYLRKAVELFGMMPKKNVASWV-----------------------SLI 237
                     + G    +V + G++P   V  ++                       S I
Sbjct: 139 DAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFI 198

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
             +M+ G ++    LF++MP KG+++W A+I+G+SQNG A   L ++ QM  +GV  + F
Sbjct: 199 TMYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPF 258

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+VS LS+CA +GA + G  V   +  N F     +  A + MYA+CGN+  A  VF   
Sbjct: 259 TLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIM 318

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
             K L++WTAMI    +HG  E  +  F  M+  G  PDG VF+ +L+AC +SG     L
Sbjct: 319 PVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGL 378

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ----------------------- 454
             F +M+ +Y +EP  +H++ +V+LL R G+  +  +                       
Sbjct: 379 ELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKI 438

Query: 455 -----NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
                 ++ +F K+++ +P +   YVL+SNIY+     + + R+R +M+ R+ +K PG+S
Sbjct: 439 HKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYS 498

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE-QGYMPGTEWVLHNIKEEKEEAL 566
           Y+E  G VH F AG   H+  +E+H  L+++     E  G M           EE     
Sbjct: 499 YVEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDR------GEEVSSTT 552

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
             HSE+LA+AFG++ + PGT I ++K L +C DCH  +K  SKI  R+ V+RD +RFHYF
Sbjct: 553 REHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYF 612

Query: 626 KDGTCSCRDYW 636
           KDG CSC+DYW
Sbjct: 613 KDGVCSCKDYW 623



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 165/403 (40%), Gaps = 53/403 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGL 104
           +Q+H  +          + T LIS       +  A  +F+   P++  +   +N LI G 
Sbjct: 73  QQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFEE-NPQSSQLSVCYNALISGY 131

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             NS        F  M    V  + +T   +         L LGR LH   VK G++ + 
Sbjct: 132 TANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGLDSEV 191

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            V      MY++ G      ++FDE P K     ++ WN +I+G S+ G     +EL+  
Sbjct: 192 AVLNSFITMYMKCGSVEAGRRLFDEMPVKG----LITWNAVISGYSQNGLAYDVLELYEQ 247

Query: 225 MPKKNVA----SWVSLI---------------------DGFM--------------RKGD 245
           M    V     + VS++                     +GF+              R G+
Sbjct: 248 MKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGN 307

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           L KA  +F+ MP K +VSWTAMI  +  +G  E  L +F  M+  G+R +    V  LSA
Sbjct: 308 LAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSA 367

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDL 362
           C+  G  + G+ +   +   ++ L+      + LVD+  + G + EA   +     E D 
Sbjct: 368 CSHSGLTDKGLELFRAMK-REYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDG 426

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
             W A++    IH   + A   F K++    EP+   +  +++
Sbjct: 427 AVWGALLGACKIHKNVDMAELAFAKVIE--FEPNNIGYYVLMS 467


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 227/708 (32%), Positives = 358/708 (50%), Gaps = 79/708 (11%)

Query: 1   MKGHVFNRLTTAIAPTTNI-KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           +KG  F+   ++I+  T++ K++    +N T    IS     N    L   HA  ++   
Sbjct: 78  IKGFSFSPDASSISFYTHLLKNTTLSPDNFTYAFAISASPDDNLGMCL---HAHAVVDGF 134

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            ++  + + L+        + YA  +FD    ++  ++N +I GL  N  +   +  F  
Sbjct: 135 DSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKD 194

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   VR +  T   V  +VA +  + +G G+ CL +K G  +D +V   L  ++ +   
Sbjct: 195 MVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVLTGLISVFSKCED 254

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----------------G 223
              A  +F       +   ++ +N LI+G S  G    AV+ F                G
Sbjct: 255 VDTARLLFGMI----RKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVG 310

Query: 224 MMPKKNVASWVSL---IDGFM--------------------RKGDLKKAGELFEQMPEKG 260
           ++P  +    + L   I GF                     R  ++  A +LF++  EK 
Sbjct: 311 LIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQLFDESSEKT 370

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           V +W AMI+G++Q+G  E A+++F +M+      N  T+ S LSACA++GAL  G  VH 
Sbjct: 371 VAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGALSFGKSVHQ 430

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            I   +      + TAL+DMYAKCGNI  AS +F  T EK+ +TW  MI+G  +HG  ++
Sbjct: 431 LIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDE 490

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A++ F +M++ G +P    FL++L AC ++G V+     F +M   Y IEP  +H+  +V
Sbjct: 491 ALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMV 550

Query: 441 NLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPS 472
           ++L R GQ  +  +                             ++ +  +L +L P +  
Sbjct: 551 DILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVG 610

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            YVLLSNIY+ E  +   A VR  +++R++ K PG + IEVNG  H F  G   H     
Sbjct: 611 YYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCGDRSHSQTTS 670

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIK 589
           I++KLE++    RE GY   T   LH+++EE++E +   HSEKLA+AFGLI T PGT I+
Sbjct: 671 IYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLITTEPGTEIR 730

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I+K L +C DCH+  K+ SKI++R IV+RD  RFH+FKDG CSC DYW
Sbjct: 731 IIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/471 (24%), Positives = 216/471 (45%), Gaps = 57/471 (12%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIIL----HNLFASSRITTQLISSASLHKSIDYAL 83
           +I+   +++LI  + +   L + HAQ+I     H+L   +++T +L    +      +A 
Sbjct: 5   DISRNTLLALISKACTFPHLAETHAQLIRNGYQHDLATVTKLTQKLFDVGATR----HAR 60

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASL 142
           ++F      ++ +FNVLI+G + +    S IS +  +L+  ++ P+  TY F   ++++ 
Sbjct: 61  ALFFSVPKPDIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAF---AISAS 116

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
              +LG  LH   V  G + + FV   L D+Y +  +   A KVFD+ P+++     +LW
Sbjct: 117 PDDNLGMCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRD----TVLW 172

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------------- 231
           N +I G  +      +V++F  M  + V                                
Sbjct: 173 NTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALK 232

Query: 232 --------SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                       LI  F +  D+  A  LF  + +  +VS+ A+I+GFS NGE E A+  
Sbjct: 233 LGFHFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKY 292

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F ++L +G R +  T+V  +   +  G L     +  +   +   L+ ++ TAL  +Y++
Sbjct: 293 FRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSR 352

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
              I+ A  +F E+ EK +  W AMI G A  G  E AI  F++MM +   P+     +I
Sbjct: 353 LNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSI 412

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           L+AC   G +    +    ++    +E ++   T ++++ ++ G  S+  Q
Sbjct: 413 LSACAQLGALSFGKSVHQLIK-SKNLEQNIYVSTALIDMYAKCGNISEASQ 462


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 212/618 (34%), Positives = 320/618 (51%), Gaps = 89/618 (14%)

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
           SH +  ++ + +M +L +  +    P V K+ + +S+  +G+ +H   VK+G+  D FV 
Sbjct: 88  SHPRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVV 147

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN------------------KSESVLLWNVLINGC 209
             L  MY + G    A  +FD+  E++                     S++ W  +I G 
Sbjct: 148 NALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGY 207

Query: 210 SKIGYLRKAVELFGMMPKKNV--------------------------------------- 230
            +   L +   LF  M ++NV                                       
Sbjct: 208 IRCNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSL 267

Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
           A   +L+D + + G+++ A  +F+ M  K V++WTAMI+ ++Q    + A  +F QM D 
Sbjct: 268 ALATALVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDN 327

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           GVR N+ T+VS LS CA  GAL+ G   H YI      +   + TAL+DMYAKCG+I  A
Sbjct: 328 GVRPNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGA 387

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F E  ++D+ TW  M+ G  +HG  E+A++ F +M   G +P+   F+  L AC ++
Sbjct: 388 QRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHA 447

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------ 458
           G V      F+ M  D+ + P V+H+  +V+LL R G   + Y+  ++            
Sbjct: 448 GLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGA 507

Query: 459 ----------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                           +  +LL L+P++    VL+SNIYAA  RW DVA +R  ++   I
Sbjct: 508 MLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGI 567

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-K 559
           KK+PG S IEVNG VH F+ G   H L ++I   L ++    +E GY+P T  VLHNI +
Sbjct: 568 KKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDE 627

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EEKE AL  HSEKLA+AFGLI T PGT I++VK L IC DCH++ K  SKI +R I++RD
Sbjct: 628 EEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRD 687

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH+F++G+CSC  YW
Sbjct: 688 RNRFHHFREGSCSCGGYW 705



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 22/300 (7%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N+IT   +I       + +  +++HA I+ +    S  + T L+        I  A +IF
Sbjct: 231 NDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIF 290

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K++  +  +I   A+ +        FV M    VRPN LT   +    A    L 
Sbjct: 291 DSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALD 350

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +G+  H  I K GVE D  ++  L DMY + G   GA ++F E  +++    +  WNV++
Sbjct: 351 MGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRD----ICTWNVMM 406

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
            G    GY  KA++LF  M     K N  +++  +      G + +   LFE+       
Sbjct: 407 AGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEK------- 459

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV---GALEAGVRVH 319
               MI+ F    + E    M   +  AG+    + ++ ++     +   GA+ A  ++H
Sbjct: 460 ----MIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIH 515


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  362 bits (928), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 223/672 (33%), Positives = 339/672 (50%), Gaps = 76/672 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           +L+ +S     + +IHA +IL  +F       +LI S +    I+ A  +FD      + 
Sbjct: 12  TLLITSKDEPTIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVD 71

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +N +I   +        +S +  M    VRP+  TY  V K+      L  G       
Sbjct: 72  AWNAMIIAYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQA 131

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           V  G   D FV   + ++Y + GK   A +VFD+   ++    ++ W  +I G ++ G  
Sbjct: 132 VDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRD----LVCWTTMITGLAQNGQA 187

Query: 216 RKAVELFGMMPKK---------------------------------------NVASWVSL 236
           R+AV+++  M KK                                       +V    SL
Sbjct: 188 REAVDIYRQMHKKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSL 247

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +D + + G L+ A  +F +M  K V+SW+A+I+GF+QNG A  AL +   M   G + + 
Sbjct: 248 VDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDS 307

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            ++VS L AC++VG L+ G  VH YI            TA++DMY+KCG++  A  VF +
Sbjct: 308 VSLVSVLLACSQVGFLKLGKSVHGYI-VRRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQ 366

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              +D ++W A+I    IHG  E+A+  F +M  +  +PD   F ++L+A  +SG V+  
Sbjct: 367 ISFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKG 426

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT--------------- 461
             +F  M  +Y I+PS KH+  +V+LLSR G+  +  +  ++  T               
Sbjct: 427 RYWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCL 486

Query: 462 -------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                        K+L+L P  P  Y L+SN +A   RW +VA VR +M++  +KK PG+
Sbjct: 487 NHGKFLIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGY 546

Query: 509 SYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL 566
           S +EVNG +H F  E   H   +EI   L  +    +  GY+P TE+VLHN++EE +E +
Sbjct: 547 SVMEVNGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERM 606

Query: 567 GC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHY 624
            C HSE+LA+AFGL+ T PGT + I K L +CGDCH   K+ SKI  REIV+RD  RFH+
Sbjct: 607 LCNHSERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHH 666

Query: 625 FKDGTCSCRDYW 636
           FKDG CSC DYW
Sbjct: 667 FKDGVCSCGDYW 678


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 212/616 (34%), Positives = 336/616 (54%), Gaps = 55/616 (8%)

Query: 57  HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
           +N+ AS++    LI+S      ID A+ +F+    K+   +N ++   A+         H
Sbjct: 39  NNVIASNK----LIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKP------GH 88

Query: 117 FVFMLRLSVR---PNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLAD 172
           F +  +L  +   PN ++Y  +         +   RG    + +K    ++  +      
Sbjct: 89  FEYARQLFEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISA---- 144

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
              Q+G    A ++F   PEKN     + W+ +++G    G L  AVE F   P ++V +
Sbjct: 145 -LAQVGLMGEARRLFSAMPEKN----CVSWSAMVSGYVACGDLDAAVECFYAAPMRSVIT 199

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           W ++I G+M+ G ++ A  LF++M  + +V+W AMI G+ +NG AE  L +F  ML+ GV
Sbjct: 200 WTAMITGYMKFGRVELAERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGV 259

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + N  ++ S L  C+ + AL+ G +VH  +           GT+LV MY+KCG+++ A  
Sbjct: 260 KPNALSLTSVLLGCSNLSALQLGKQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWE 319

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F +   KD++ W AMI G A HG  ++A++ F +M   G +PD   F+A+L AC ++G 
Sbjct: 320 LFIQIPRKDVVCWNAMISGYAQHGAGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGL 379

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------- 452
           V L + +F++MR D+ IE   +H+  +V+LL R G+ S+                     
Sbjct: 380 VDLGVQYFNTMRRDFGIETKPEHYACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLL 439

Query: 453 -----YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                ++N   ++ +   LL+L P   + YV L+N+YAA+ RW  VA +R  M+  ++ K
Sbjct: 440 GACRIHKNLNLAEFAAKNLLELDPTIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVK 499

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE- 561
            PG+S+IE+N  VH F +    H     IH KL+D+    +  GY+P  E+VLH++ EE 
Sbjct: 500 IPGYSWIEINSVVHGFRSSDRLHPELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEEL 559

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE+ L  HSEKLA+AFGL++   G  I++ K L +CGDCHS  KY S I  REI++RD T
Sbjct: 560 KEQLLLWHSEKLAIAFGLLKVPLGVPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTT 619

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FKDG CSCRDYW
Sbjct: 620 RFHHFKDGFCSCRDYW 635


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  361 bits (927), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 219/683 (32%), Positives = 366/683 (53%), Gaps = 79/683 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  + + +I++      + Q R+IH  +I     + +     L+   +    ++ A S+F
Sbjct: 110 NEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVF 169

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D     ++  +N +I G   + +    +     M +  + PN  T     K+ A ++L  
Sbjct: 170 DEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRE 229

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           LGR LH  ++K  +  D+F+ V L DMY +      A  VF   PE++    ++ WN +I
Sbjct: 230 LGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERD----MIAWNAVI 285

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV------------------ASWV-------------- 234
           +G S+     +A  LF +M  + +                  A+++              
Sbjct: 286 SGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFE 345

Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                  SLID + + G ++ A  +FE+ P   +V +T+++  ++Q+G+ E+AL ++ +M
Sbjct: 346 FDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEM 405

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCG 345
            D G++ + F   S L+ACA + A E G +VH +I    FG    I  G +LV+MYAKCG
Sbjct: 406 QDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL--KFGFMSDIFAGNSLVNMYAKCG 463

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           +IE AS  F     + +++W+AMI GLA HG  ++A+Q FK+M+  G  P+    +++L 
Sbjct: 464 SIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLC 523

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNS- 456
           AC ++G V  A ++F+SM+  + IEP  +H+  +++LL R G+        +   +Q + 
Sbjct: 524 ACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANA 583

Query: 457 -------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                              + +   LL L+P+   ++VLL+NIYA+ G W  VARVR LM
Sbjct: 584 LVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLM 643

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           +   +KK+PG S++EV   V+ F  G   H  + EI++KL+++    ++ GY+P  E  L
Sbjct: 644 KDGKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDL 703

Query: 556 HNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H++ + EKE+ L  HSEKLA+AFGLI T PG  I++ K L IC DCH+++K+ SKI  RE
Sbjct: 704 HDVERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSRE 763

Query: 615 IVLRDT-RFHYFKDGTCSCRDYW 636
           I++RDT RFH+F++G+CSC +YW
Sbjct: 764 IIVRDTNRFHHFREGSCSCGEYW 786



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 188/414 (45%), Gaps = 46/414 (11%)

Query: 36  SLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           S++ +   TK L   +Q+H  +++    +   +   L+   +       A S+FD    +
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDR 74

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           ++  +N L      +      +S F  M+   +RPN  +   +      L     GR +H
Sbjct: 75  SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGRKIH 134

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G + DAF    L DMY ++G    A  VFDE  + +    ++ WN +I GC   
Sbjct: 135 GYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPD----IVSWNAIIAGCVLH 190

Query: 213 GYLRKAVELF------GMMP-----------------------------KKNVAS----W 233
            Y  +A+EL       GM P                             K ++ S     
Sbjct: 191 EYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLG 250

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           V LID + +   +  A  +F+ MPE+ +++W A+I+G SQN E E+A ++F  M   G+ 
Sbjct: 251 VGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIG 310

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  T+ + L + A + A     ++H     + F     +  +L+D Y KCG++E A+ V
Sbjct: 311 FNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRV 370

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           F E+   DL+ +T+++   A  G+ E+A++ + +M   G +PD  V  ++L AC
Sbjct: 371 FEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNAC 424



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 116/434 (26%), Positives = 193/434 (44%), Gaps = 69/434 (15%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M  L ++ N   +P V K+      L LG+ +H ++V +G + D FV   L  +Y + G 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----- 228
              A  +FD  P++    SV+ WN L +         +AV LF      G+ P +     
Sbjct: 61  FGDARSLFDAIPDR----SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSS 116

Query: 229 --NVASWV--------------------------SLIDGFMRKGDLKKAGELFEQMPEKG 260
             NV + +                          +L+D + + G L+ A  +F+++ +  
Sbjct: 117 MINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPD 176

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW A+I G   +    +AL +  +M  +G+  N FT+ SAL ACA +   E G ++H+
Sbjct: 177 IVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHS 236

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            +   D G    +G  L+DMY+KC +++ A LVF    E+D++ W A+I G + +   E+
Sbjct: 237 SLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEE 296

Query: 381 AIQYFKKMMYSGTEPDGTVF------LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           A   F  M   G   + T        +A L A +   Q+  AL+      FD +      
Sbjct: 297 AASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIH-ALSLKSGFEFDNY------ 349

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI---YAAEGRWKDVA 491
               VVN L     D+ G        T++ +  P      VL +++   YA +G+ ++  
Sbjct: 350 ----VVNSLI----DTYGKCGHVEDATRVFEESP--IVDLVLFTSLVTAYAQDGQGEEAL 399

Query: 492 RVRTLMQRRSIKKD 505
           R+   MQ R IK D
Sbjct: 400 RLYLEMQDRGIKPD 413


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  361 bits (927), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 217/643 (33%), Positives = 337/643 (52%), Gaps = 75/643 (11%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + + +IS       I  A  +FD    K++  +N +I G  +   F      F  M    
Sbjct: 167 VGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSG 226

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           ++P+ +T   + ++   +  L LG+ +H  ++  G+  D  V     DMY ++G    A 
Sbjct: 227 IKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDG- 239
            VF + P +N    ++ WN +I+GC + G + ++ +LF  + +     ++ + VSL+ G 
Sbjct: 287 WVFYKMPTRN----LVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGC 342

Query: 240 ---------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                            + + G LK+A  +F +M ++ V++WTA
Sbjct: 343 SQTASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTA 402

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+ G +QNG AE AL +F QM + G+ AN  T VS + +CA +G+L+ G  +H ++    
Sbjct: 403 MLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLG 462

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           F       TALVDMYAKCG I  A  +F   +  KD++ W +MI G  +HG   QA+  +
Sbjct: 463 FAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIY 522

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            KM+  G +P+ T FL++L+AC +S  V+  ++ F+SM  D+ I P  KH+  +V+LLSR
Sbjct: 523 HKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSR 582

Query: 446 VG--QDSQ--------------------GYQNSQN------SFTKLLQLKPKHPSSYVLL 477
            G  +++Q                    G +  +N      +  KLL L   +P  Y++L
Sbjct: 583 AGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIML 642

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           SNIYA   RW  V  +R LM+ R +KK PG+S +E    VH F AG   H   +EI+  L
Sbjct: 643 SNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFL 702

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E + +     GY+P T  VL ++ EE K   L  HSE+LA+AFGL+ T  G+ I+I K L
Sbjct: 703 ESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNL 762

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +CGDCH++ KY SKI +REI++RD  RFH+F +G CSC DYW
Sbjct: 763 RVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 204/418 (48%), Gaps = 46/418 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH-FTPKNLH 95
           L  SS +   ++  HAQII ++L     + T+L+ + S  +S++ A  +FD  F PK L 
Sbjct: 38  LRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGL- 96

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           + N ++ G  ++  ++  +  F  M   ++  +  +  F  K+ AS     +G  +    
Sbjct: 97  LCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSA 156

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           V+ G+E + FV   +    V+ GK   A +VFD  P K+    V+ WN +I G  + G  
Sbjct: 157 VEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKD----VVCWNSIIGGYVQAGCF 212

Query: 216 RKAVELF------GMMPK---------------------------------KNVASWVSL 236
             A +LF      G+ P                                   ++    S 
Sbjct: 213 DVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSF 272

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +D + + GD++ A  +F +MP + +VSW AMI+G  +NG   ++  +F +++ +    + 
Sbjct: 273 VDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDL 332

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T+VS L  C++  +L  G  +H   +   F     + TA+VD+Y+KCG+++ A+ VF  
Sbjct: 333 TTIVSLLQGCSQTASLATGKILHG-CAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNR 391

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            K+++++TWTAM+ GLA +G  E A++ F +M   G   +   F++++ +C + G +K
Sbjct: 392 MKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLK 449



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 172/393 (43%), Gaps = 52/393 (13%)

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I+ + +  D FV   L   Y  L     A  VFD+  +       LL N ++ G  +
Sbjct: 52  HAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKG----LLCNAMLCGYLQ 107

Query: 212 IGYLRKAVELFGMMPKKN---------------------------VASWV---------- 234
            G  R+ +ELFG+M  +N                           ++S V          
Sbjct: 108 SGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFV 167

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             S+I   ++ G + +A  +F+ MP K VV W ++I G+ Q G  + A  +FF+M  +G+
Sbjct: 168 GSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGI 227

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + +  T+ S + AC  +G L+ G  +H Y+     G    + T+ VDMY+K G+IE+A  
Sbjct: 228 KPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARW 287

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF +   ++L++W AMI G   +G   ++   F +++ S    D T  +++L  C  +  
Sbjct: 288 VFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTAS 347

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472
           +              F E ++   T +V+L S+ G   Q       +F    ++K ++  
Sbjct: 348 LATG-KILHGCAIRSF-ESNLILSTAIVDLYSKCGSLKQA------TFV-FNRMKDRNVI 398

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           ++  +    A  G  +D  R+   MQ   I  +
Sbjct: 399 TWTAMLVGLAQNGHAEDALRLFAQMQEEGIAAN 431



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 150/353 (42%), Gaps = 24/353 (6%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL----FASSRI-TTQLISSASLHKS 78
           + S     T I+SL+   + T  L       ILH      F S+ I +T ++   S   S
Sbjct: 325 RSSGGFDLTTIVSLLQGCSQTASLA---TGKILHGCAIRSFESNLILSTAIVDLYSKCGS 381

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  A  +F+    +N+  +  ++ GLA+N H +  +  F  M    +  N +T+  +  S
Sbjct: 382 LKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHS 441

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L  L  GR +H  + + G  +D      L DMY + GK   A ++F      + S+ 
Sbjct: 442 CAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFS---HGSISKD 498

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+LWN +I G    G+  +AV ++  M     K N  +++SL+        +++   LF 
Sbjct: 499 VVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFN 558

Query: 255 QMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M     +      +  +++  S+ G  E+A A+  +M     +     + + LS C   
Sbjct: 559 SMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKM---PFQPGTAVLEALLSGCRTH 615

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
             +  G++  + +   D  +   I   L ++YA+    +    + G  + + L
Sbjct: 616 KNINLGIQTSDKLLALD-AMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGL 667


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 217/664 (32%), Positives = 354/664 (53%), Gaps = 83/664 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H   +   L     ++  LI+     +   +A ++FD+ + ++L  +N +I G+A+N
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-LSLGRGLHCLIVKSGVEYDAFV 166
                 +  F+ +LR  ++P++ T   V K+ +SL   LSL + +H   +K     D+FV
Sbjct: 395 GLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFV 454

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L D Y +    + A  +F+       +  ++ WN ++ G ++     K ++LF +M 
Sbjct: 455 STALIDAYSRNRCMKEAEILFER-----HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMH 509

Query: 227 KKNVAS-------------------------------------WVS--LIDGFMRKGDLK 247
           K+   S                                     WVS  ++D +++ GD+ 
Sbjct: 510 KQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMS 569

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A   F+ +P    V+WT MI+G  +NGE E+A  +F QM   GV  ++FT+ +   A +
Sbjct: 570 AAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASS 629

Query: 308 KVGALEAGVRVHN---YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
            + ALE G ++H     ++C +      +GT+LVDMYAKCG+I+ A  +F   +  ++  
Sbjct: 630 CLTALEQGRQIHANALKLNCTN---DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITA 686

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AM+ GLA HG  ++ +Q FK+M   G +PD   F+ +L+AC +SG V  A     SM 
Sbjct: 687 WNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMH 746

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNS 456
            DY I+P ++H++ + + L R G   Q                              +  
Sbjct: 747 GDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETG 806

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           +   TKLL+L+P   S+YVLLSN+YAA  +W ++   RT+M+   +KKDPG+S+IEV   
Sbjct: 807 KRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNK 866

Query: 517 VHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKL 573
           +H F  +   ++  + I+ K++D++   +++GY+P T++ L ++ +EEKE AL  HSEKL
Sbjct: 867 IHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKL 926

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFGL+ T P T I+++K L +CGDCH+ MKY +K+  REIVLRD  RFH FKDG CSC
Sbjct: 927 AVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSC 986

Query: 633 RDYW 636
            DYW
Sbjct: 987 GDYW 990



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 168/373 (45%), Gaps = 26/373 (6%)

Query: 51  HAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS-- 108
           HA+I+         +   LIS  S   S+ YA  +FD    ++L  +N ++   A++S  
Sbjct: 62  HARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSEC 121

Query: 109 ---HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
              + Q     F  + +  V  +R+T   + K       +      H    K G++ D F
Sbjct: 122 VVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEF 181

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---- 221
           V   L ++Y++ GK +    +F+E P ++    V+LWN+++    ++G+  +A++L    
Sbjct: 182 VAGALVNIYLKFGKVKEGKVLFEEMPYRD----VVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 222 --FGMMPKKNVASWVSLIDGFMRKGDLKKAGEL--FEQMPEKGVVSWTAMIN-GFSQ--- 273
              G+ P +     ++ I      GD   AG++  F    +   VS     N G S+   
Sbjct: 238 HSSGLNPNEITLRLLARI-----SGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLH 292

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           +G+    L  F  M+++ V  +  T +  L+   KV +L  G +VH         L   +
Sbjct: 293 SGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTV 352

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
             +L++MY K      A  VF    E+DL++W ++I G+A +G   +A+  F +++  G 
Sbjct: 353 SNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGL 412

Query: 394 EPDGTVFLAILTA 406
           +PD     ++L A
Sbjct: 413 KPDQYTMTSVLKA 425



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 118/291 (40%), Gaps = 28/291 (9%)

Query: 43  STKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
           +  Q +Q+HA  I      +L+ SS I    +    +      A   FD     +   + 
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSA----AQFAFDSIPVPDDVAWT 587

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
            +I G  EN   +     F  M  + V P+  T   ++K+ + L+ L  GR +H   +K 
Sbjct: 588 TMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKL 647

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
               D FV   L DMY + G    A+ +F      N    +  WN ++ G ++ G  ++ 
Sbjct: 648 NCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMN----ITAWNAMLVGLAQHGEGKET 703

Query: 219 VELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQM-------PEKGVVSWTAM 267
           ++LF  M     K +  +++ ++      G + +A +    M       PE  +  ++ +
Sbjct: 704 LQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE--IEHYSCL 761

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
            +   + G  ++A  +   M    + A+     + L+AC   G  E G RV
Sbjct: 762 ADALGRAGLVKQAENLIESM---SMEASASMYRTLLAACRVQGDTETGKRV 809



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 96/240 (40%), Gaps = 47/240 (19%)

Query: 165 FVRVHLADMYVQLGK-TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
           F+R  +    + LGK T      F+E PE+       L N LI+  SK G L  A  +F 
Sbjct: 45  FLRNAITSSDLMLGKCTHARILTFEENPER------FLINNLISMYSKCGSLTYARRVFD 98

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA-----E 278
            MP +++                               VSW +++  ++Q+ E      +
Sbjct: 99  KMPDRDL-------------------------------VSWNSILAAYAQSSECVVENIQ 127

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTA 336
           +A  +F  +    V  +  T+   L  C   G + A    H Y +C   GL G   +  A
Sbjct: 128 QAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGY-ACK-IGLDGDEFVAGA 185

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LV++Y K G ++   ++F E   +D++ W  M+      G  E+AI        SG  P+
Sbjct: 186 LVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPN 245


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  361 bits (926), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 330/602 (54%), Gaps = 80/602 (13%)

Query: 79  IDYALSIFDHFTPKNLHIF--NVLIRGLAEN---SHFQSCISHFVFMLRLSVRPNRLTYP 133
           I YA  IF H     L  F  N++IR +  N       S IS +  M    V P+  T+P
Sbjct: 7   ISYANPIF-HIRHLKLESFVWNIIIRAIVHNVSPPQRHSPISVYFRMRHHCVSPDFHTFP 65

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           F+  S  +   L LG+  H  I+  G++ D FVR  L +MY   G    A ++FD     
Sbjct: 66  FLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSALRIFD----- 120

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
              ESV                            K++ +W S+++ + + G +  A +LF
Sbjct: 121 ---ESV---------------------------SKDLPAWNSVVNAYAKAGLINHARKLF 150

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-----DAGVRANDFTVVSALSACAK 308
           ++MPE+ V+SW+ +ING+   G+ ++AL +F +M      +  V  N FT+ + LSAC +
Sbjct: 151 DEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGR 210

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTA 367
           +GALE G  VH+YI      +   +GTAL+DMYAKCG++E A  VF     +KD+  ++A
Sbjct: 211 LGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKDVKAYSA 270

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           MI  LA++G  ++  Q F +M  S    P+   F+ IL AC + G +    ++F  M  +
Sbjct: 271 MICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYFKMMTEE 330

Query: 427 YFIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNSQN 458
           + I PS++H+  +V+L  R G  ++++ +                          +  + 
Sbjct: 331 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 390

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  +L++L P +  +YVLLSN+YA  GRW +V R+R  M+ + IKK PG SY+EV G VH
Sbjct: 391 ALKRLIELDPMNSGAYVLLSNVYAKTGRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVH 450

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLAL 575
            F  G    + ++ I++ LE+IM   RE GY+  T+ VL +++E +KE AL  HSEKLA+
Sbjct: 451 EFVVGDESQQESERIYAMLEEIMQRLREAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAI 510

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AF L++T PGT ++I+K L ICGDCH +MK  SK+  REIV+RD  RFH+F DG+CSCRD
Sbjct: 511 AFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRD 570

Query: 635 YW 636
           +W
Sbjct: 571 FW 572


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  361 bits (926), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 207/599 (34%), Positives = 313/599 (52%), Gaps = 97/599 (16%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TY  V +  A L  +  GR +H +I  + VE D  +   L  MYV  G  R   ++FD  
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD-- 160

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------KNVAS 232
             K  +E V LWN+L+NG +KIG  R+++ LF  M +                  ++V S
Sbjct: 161 --KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVIS 218

Query: 233 WVSLIDGFM-------------------------------------------RKGDLKKA 249
           W S+I G++                                           + G+L  A
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSA 278

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            ++FE M E+ VVSWT+MI G+++ G ++ ++ +F +M    +  N  T+   L ACA +
Sbjct: 279 IQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASL 338

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            ALE G  +H +I  N F L   +  ALVDMY KCG +  A L+F    EKDL++WT MI
Sbjct: 339 AALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMI 398

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G  +HG   +AI  F +M  SG EPD   F++IL AC +SG +     FF+ MR +  I
Sbjct: 399 AGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCI 458

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNSFT 461
           EP  +H+  +V+LL+R G  S+ Y+                             ++    
Sbjct: 459 EPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAE 518

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
            + +L+P++   YVLL+NIYA   +W++V ++R  + RR ++K+PG S+IE+ G VH F 
Sbjct: 519 HVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFV 578

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFG 578
            G   H LA +I   L+      +E+G+ P   + L    + EKE AL  HSEK+A+AFG
Sbjct: 579 TGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFG 638

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           ++   PG T+++ K L +CGDCH + K+ SK+ +R+I+LRD+ RFH+FKDG+CSCR +W
Sbjct: 639 ILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 697



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/322 (21%), Positives = 141/322 (43%), Gaps = 47/322 (14%)

Query: 126 RPNRLTYP--FVSKSVASLSLLSLGRGLH-CLIVKSGVEYDAFVRVHLADM------YVQ 176
           R N LTYP  F+    +S + L      H C  + + V     +   + D       + +
Sbjct: 21  RENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLPSETIDCKITDYNIEICRFCE 80

Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
           LG  R A ++ +++P+ +    +  +  ++  C+ +  ++    +  ++   +V      
Sbjct: 81  LGNLRRAMELINQSPKPDLE--LRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVE----- 133

Query: 237 IDG---------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           +DG         ++  GDL++   +F+++  + V  W  ++NG+++ G   ++L++F +M
Sbjct: 134 VDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRM 193

Query: 288 LDAGVRA-----------NDFTVV---SALSACAKVGALEAGVRVH--------NYISCN 325
            + G+R             D  V+   S +S     G  E G+ +         N     
Sbjct: 194 RELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLAT 253

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              ++  +   L+DMY+K GN+ +A  VF    E+ +++WT+MI G A  G  + +++ F
Sbjct: 254 MVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLF 313

Query: 386 KKMMYSGTEPDGTVFLAILTAC 407
            +M      P+      IL AC
Sbjct: 314 HEMEKEDLFPNSITMACILPAC 335



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 101/229 (44%), Gaps = 14/229 (6%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L+   S   +++ A+ +F+    +++  +  +I G A        +  F  M +  + PN
Sbjct: 265 LLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPN 324

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T   +  + ASL+ L  G+ +H  I+++G   D  V   L DMY++ G    A  +FD
Sbjct: 325 SITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFD 384

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKG 244
             PEK+    ++ W V+I G    GY  +A+  F  M    +     S++S++      G
Sbjct: 385 MIPEKD----LVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSG 440

Query: 245 DLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQML 288
            L +    F  M     +      +  +++  ++ G   KA   F +M+
Sbjct: 441 LLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYK-FIKMM 488



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 46/244 (18%), Positives = 95/244 (38%), Gaps = 17/244 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N+IT   I+    S  + ++ ++IH  I+ +       +   L+       ++  A  +F
Sbjct: 324 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 383

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K+L  + V+I G   + +    I+ F  M    + P+ +++  +  + +   LL 
Sbjct: 384 DMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLD 443

Query: 147 LGRGL------HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            G G       +C I      Y   V     D+  + G    A+K     P +  +    
Sbjct: 444 EGWGFFNMMRNNCCIEPKSEHYACIV-----DLLARAGNLSKAYKFIKMMPIEPDAT--- 495

Query: 201 LWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           +W  L+ GC     +    K  E    +  +N   +V L + +      ++  +L E++ 
Sbjct: 496 IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIG 555

Query: 258 EKGV 261
            +G+
Sbjct: 556 RRGL 559


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 221/648 (34%), Positives = 340/648 (52%), Gaps = 87/648 (13%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSI 85
           I+   ++S++    S  +LRQIHAQ+I  NL       ++LI+  SL      +DYA S+
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASLS 143
           F      N  IF  LI+G ++ S+    +  +  ML      + + +  P V K+   L 
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               GR +H  ++K+ + +D FV   +  MY+  G+   A +VFD               
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR-------------- 169

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                                MP ++V SW S+I G+++ G+++ A ELF++MPE+ +VS
Sbjct: 170 ---------------------MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVS 208

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
             AMI+G+ +            +ML  G+R +   +VS LSA A +G +E G  +H Y+S
Sbjct: 209 CNAMIDGYGK------------EMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 256

Query: 324 CNDFGLK-GAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQA 381
            N   L  G IG+AL+DMY+KCG IE A  VF   +  +++  W +MI GLAIHG   +A
Sbjct: 257 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 316

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F +M     EP+   FL +L+ C + G V+    +F+SM   Y I P ++H+  +++
Sbjct: 317 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 376

Query: 442 LLSRVG--QDSQGY-QN-------------------------SQNSFTKLLQLKPKHPSS 473
           L  R G  +D+ G  QN                          +++  + ++L P   SS
Sbjct: 377 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSS 436

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGH---KLAKE 530
           YVLLSNIYA  GRW DVA++R +M++R +KK  G S + VNG VH F  G       + +
Sbjct: 437 YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEFLLGKELDSSYSGQ 496

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           + +K+ ++++  + QGY P    VL +I++E KE  L  HSEK+A+AFGLI       I 
Sbjct: 497 VLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIAFGLIHINKSAPIH 556

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH  MK  SK+  R+I++RD  RFH+F++G CSC +YW
Sbjct: 557 IVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEYW 604


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 214/678 (31%), Positives = 352/678 (51%), Gaps = 80/678 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           T+++ +   +   ++ ++IH Q+I++   ++    T +++  +  + ++ A  +FD    
Sbjct: 179 TYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPE 238

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           ++L  +N +I G A+N   ++ +   + M     RP+ +T   +  +VA +  L +GR +
Sbjct: 239 RDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSI 298

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H   +++G E    V   L DMY + G    A  +FD    K    +V+ WN +I+G  +
Sbjct: 299 HGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGK----TVVSWNSMIDGYVQ 354

Query: 212 IGYLRKAVELFGMMPKK---------------------------------------NVAS 232
            G    A+E+F  M  +                                       +V+ 
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSV 414

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             SLI  + +   +  A E+FE +  K +VSW AMI G++QNG   +A+  F +M    +
Sbjct: 415 MNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNI 474

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           + + FT+VS + A A++  L     +H  +  +C D  +   + TALVDMYAKCG +  A
Sbjct: 475 KPDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNV--FVATALVDMYAKCGAVHTA 532

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F    E+ + TW AMI G   HG  + A++ F+KM     +P+   FL +L+AC +S
Sbjct: 533 RKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHS 592

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------- 453
           G V+    +F SM+ DY +EP++ H+  +V+LL R  + ++ +                 
Sbjct: 593 GLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGA 652

Query: 454 -----------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                      +  + +  ++  L P     +VLL+NIYA    W  VARVRT M+++ I
Sbjct: 653 MLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGI 712

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           +K PGWS +E+   VH F +G   H  AK+I++ LE +    +  GYMP T  V H++++
Sbjct: 713 QKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVED 771

Query: 561 E-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
             KE+ L  HSEKLA+AF L+ T+PGTTI + K L +CGDCH+  KY S +++REI++RD
Sbjct: 772 VVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRD 831

Query: 620 T-RFHYFKDGTCSCRDYW 636
             RFH+FKDGTCSC DYW
Sbjct: 832 MRRFHHFKDGTCSCGDYW 849



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 198/409 (48%), Gaps = 43/409 (10%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           L+    S K+L Q    II + L++     T+L+S      S+  A  +F     K   +
Sbjct: 83  LLELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDEL 142

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           ++ +++G A NS     +S F  M    VRP    + ++ K     + L  G+ +HC ++
Sbjct: 143 YHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLI 202

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
            +G   + F    + +MY +      A+K+FD  PE++    ++ WN +I+G ++ G+ +
Sbjct: 203 VNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERD----LVCWNTIISGYAQNGFGK 258

Query: 217 KAVELFGMMPKK-----------------NVASW----------------------VSLI 237
            A+EL   M ++                 +V S                        +L+
Sbjct: 259 TALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALV 318

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G +  A  +F++M  K VVSW +MI+G+ QNG+   A+ +F +M+D  V   + 
Sbjct: 319 DMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNV 378

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           TV+ AL ACA +G +E G  VH  +   + G   ++  +L+ MY+KC  ++ A+ +F   
Sbjct: 379 TVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENL 438

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           + K L++W AMI G A +GR  +AI YF KM     +PD    ++++ A
Sbjct: 439 QHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPA 487



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 131/286 (45%), Gaps = 28/286 (9%)

Query: 29  ITETHIISLIHSS---NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +T   ++  +H+       +Q R +H  +    L +   +   LIS  S  K +D A  I
Sbjct: 375 MTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEI 434

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F++   K L  +N +I G A+N      I +F  M   +++P+  T   V  ++A LS+L
Sbjct: 435 FENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVL 494

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
              + +H L++++ ++ + FV   L DMY + G    A K+FD   E++    V  WN +
Sbjct: 495 PQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERH----VTTWNAM 550

Query: 206 INGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMP---- 257
           I+G    G  + A+ELF  M K+    N  +++ ++      G +++  + F  M     
Sbjct: 551 IDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYG 610

Query: 258 -EKGVVSWTAMIN------------GFSQNGEAEKALAMFFQMLDA 290
            E  +  + AM++             F Q    E A+++F  ML A
Sbjct: 611 LEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAMLGA 656



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/215 (27%), Positives = 103/215 (47%), Gaps = 7/215 (3%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  F + G L +A  +F+ + +K    +  M+ G+++N   + A++ F +M   GVR  
Sbjct: 115 LVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPV 174

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            +     L  C     L  G  +H  +  N F       T +V+MYAKC  +E A  +F 
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFD 234

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              E+DL+ W  +I G A +G  + A++   +M   G  PD    ++IL A    G +++
Sbjct: 235 RMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRI 294

Query: 416 ALNFFD-SMR--FDYFIEPSVKHHTVVVNLLSRVG 447
             +    SMR  F+ F+  S    T +V++ S+ G
Sbjct: 295 GRSIHGYSMRAGFESFVNVS----TALVDMYSKCG 325


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 192/506 (37%), Positives = 290/506 (57%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   YVQ G    A +VFD  PEKN     + WN +I G  +   + +A ELF
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELF 320

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             MP +NV+SW ++I G+ + GD+ +A   F++MP++  +SW A+I G++Q+G  E+AL 
Sbjct: 321 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 380

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G R N  T  S LS CA++ ALE G +VH  +          +G AL+ MY 
Sbjct: 381 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 440

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCGNI+ A +VF   +EK++++W  MI G A HG  ++A+  F+ M  +G  PD    + 
Sbjct: 441 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 500

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS---- 456
           +L+AC ++G V     +F SM  DY I  + KH+T +++LL R G+  D+Q    +    
Sbjct: 501 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 560

Query: 457 ----------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                 + +   + +++P +   YVLLSN+YAA GRW DV R+R
Sbjct: 561 PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMR 620

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             M+ R +KK PG+S++EV   +H F  G   H     I++ LE++    +++GY+  T+
Sbjct: 621 LRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTK 680

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEK   L  HSEKLA+AFG++    G  I+++K L +C DCH+ MK+ SKI 
Sbjct: 681 LVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIV 740

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F  G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 179/406 (44%), Gaps = 56/406 (13%)

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
           H +SC+         + +P+    P  + S+A+ + +              V+++  +  
Sbjct: 13  HSRSCLRSLQTTTTANRKPSTRNQPKTTSSLATDADI--------------VKWNIAITN 58

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
           H+ +     G+   A ++F+  P +    S + WN +I+GC        A +LF  MP +
Sbjct: 59  HMRN-----GQCDSALRLFNSMPRR----SSISWNAMISGCLSNDKFYLARQLFEKMPTR 109

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           ++ SW  +I G +R  +L+ A  LF+QMPE+ VVSW AM++G++QNG  ++A  +F +M 
Sbjct: 110 DLVSWNVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEM- 168

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
                 N  +    L+A  + G +E   R+  + S  D+ L       ++  Y K   + 
Sbjct: 169 ---PCKNSISWNGMLAAYVQNGRIEDARRL--FESKADWELISW--NCMMGGYVKRNRLV 221

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF--LAILTA 406
            A  +F    E+D ++W  MI G A +G   +A + F++       P   VF   A+++ 
Sbjct: 222 DARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEE------SPVRDVFTWTAMVSG 275

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466
              +G +  A   FD M      + SV  + ++   +     D            +L + 
Sbjct: 276 YVQNGMLDEARRVFDGMPE----KNSVSWNAIIAGYVQCKRMDQA---------RELFEA 322

Query: 467 KP-KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
            P ++ SS+  +   YA  G   D+A+ R    R   +    W+ I
Sbjct: 323 MPCQNVSSWNTMITGYAQNG---DIAQARNFFDRMPQRDSISWAAI 365



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 126/305 (41%), Gaps = 52/305 (17%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N+++   II+         Q R++   +   N+ +       +I+  + +  I  A + F
Sbjct: 296 NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSS----WNTMITGYAQNGDIAQARNFF 351

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    ++   +  +I G A++ + +  +  FV M R   R NR T+     + A ++ L 
Sbjct: 352 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 411

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           LG+ +H  +VK+G+E   +V   L  MY + G    A+ VF+   EK     V+ WN +I
Sbjct: 412 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK----EVVSWNTMI 467

Query: 207 NGCSKIGYLRKAVELF------GMMPKK-------------------------------- 228
            G ++ G+ ++A+ LF      G++P                                  
Sbjct: 468 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 527

Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE---AEKALA 282
             N   +  +ID   R G L  A  L + MP E    +W A++     +G     EKA  
Sbjct: 528 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 587

Query: 283 MFFQM 287
           M F+M
Sbjct: 588 MIFEM 592



 Score = 38.9 bits (89), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 44/230 (19%), Positives = 95/230 (41%), Gaps = 10/230 (4%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H +++   L +   +   L+       +ID A  +F+    K +  +N +I G A +
Sbjct: 414 KQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARH 473

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFV 166
              +  +  F  M +  + P+ +T   V  + +   L+  G    + +    G+  ++  
Sbjct: 474 GFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKH 533

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSES--VLLWNVLINGCSKIGYLRKAVELFGM 224
              + D+  + G+   A  +    P +  + +   LL    I+G +++G   KA ++   
Sbjct: 534 YTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELG--EKAAKMIFE 591

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
           M   N   +V L + +   G     G +  +M ++GV      SW  + N
Sbjct: 592 MEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQN 641


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 203/590 (34%), Positives = 325/590 (55%), Gaps = 44/590 (7%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  +FD  T  +   +N L+ G  + S  +     F  M +  V    +++  +   
Sbjct: 247 IQEARELFDSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSG 302

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A    ++  R L  +        D F    +   Y Q G    A +VFD  P+KN    
Sbjct: 303 YARRGDMAEARRLFDVAPIR----DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN---- 354

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
            + WN ++    +   + +A ELF  MP +NVASW +++ G+ + G L +A  +F  MP+
Sbjct: 355 AVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASWNTMLTGYAQAGMLDEARAIFGMMPQ 414

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K  VSW AM+  +SQ G +E+ L +F +M   G   N       LS CA + ALE G+++
Sbjct: 415 KDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQL 474

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H+ +    +G+   +G AL+ MY KCG++E A   F E +E+D+++W  MI G A HG  
Sbjct: 475 HSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFG 534

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           ++A++ F  M  + T+PD    + +L AC +SG V+  +++F SM  D+ +    +H+T 
Sbjct: 535 KEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTC 594

Query: 439 VVNLLSRVGQ-------------------------DSQGYQNSQ---NSFTKLLQLKPKH 470
           +++LL R G+                          S+ ++NS+   N+  K+ +L+P++
Sbjct: 595 MIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPEN 654

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLA 528
              YVLLSNIYA+ G+W+DV ++R +M  R +KK PG+S+IEV   VH F  G   H   
Sbjct: 655 AGMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPER 714

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTT 587
           ++I++ LED+    ++ GY+  T+ VLH++ +EEKE  L  HSEKLA+A+G+++  PG  
Sbjct: 715 EDIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRP 774

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I+++K L +C DCH+  K  S I  R I+LRD+ RFH+F+DG+CSC DYW
Sbjct: 775 IRVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 164/353 (46%), Gaps = 43/353 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F     ++   +N ++ G A N      +S F    R   RP+  +Y  +  ++  
Sbjct: 126 AERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFF----RSIPRPDSFSYNTLLHALGV 181

Query: 142 LSLLSLGRGL-HCLIVKSGVEYDAFVRVH--------------------------LADMY 174
            S L+  R L   + VK  V Y+  +  H                          +   Y
Sbjct: 182 SSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAY 241

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
           V+ G+ + A ++FD   E +     + WN L+ G  +   + +A ++F  MP+++V SW 
Sbjct: 242 VRNGRIQEARELFDSRTEWD----AISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVSWN 297

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +++ G+ R+GD+ +A  LF+  P + V +WTA+++G++QNG  E+A  +F  M D     
Sbjct: 298 TMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPD----K 353

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  +  + ++A  +   +E    + + + C +     A    ++  YA+ G ++ A  +F
Sbjct: 354 NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNV----ASWNTMLTGYAQAGMLDEARAIF 409

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           G   +KD ++W AM+   +  G  E+ +Q FK+M   G   + + F  +L+ C
Sbjct: 410 GMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTC 462



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/281 (20%), Positives = 116/281 (41%), Gaps = 47/281 (16%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           +++ G+   A ++F   P ++ S     +N ++ G +  G L +A+  F  +P+ +  S+
Sbjct: 117 HMRAGRVPDAERLFAAMPRRSTS----TYNTMLAGYAANGRLPQALSFFRSIPRPDSFSY 172

Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
            +L+        L     LF++MP                               EK  V
Sbjct: 173 NTLLHALGVSSSLADVRALFDEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAV 232

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW  M+  + +NG  ++A  +F    D+    +  +  + ++   +   +E   ++ N +
Sbjct: 233 SWNGMLAAYVRNGRIQEARELF----DSRTEWDAISWNALMAGYVQRSQIEEAQKMFNKM 288

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              D          +V  YA+ G++  A  +F     +D+ TWTA++ G A +G  E+A 
Sbjct: 289 PQRDV----VSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEAK 344

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           + F  M     + +   + A++ A      ++ A   FD+M
Sbjct: 345 RVFDAM----PDKNAVSWNAMMAAYVQRRMMEEAKELFDAM 381



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 24/204 (11%)

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
           P   V      I   MR G +  A  LF  MP +   ++  M+ G++ NG   +AL+ F 
Sbjct: 103 PDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFR 162

Query: 286 QMLDAGVRANDF---TVVSAL---SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
            +     R + F   T++ AL   S+ A V AL   + V + +S N           ++ 
Sbjct: 163 SI----PRPDSFSYNTLLHALGVSSSLADVRALFDEMPVKDSVSYN----------VMIS 208

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
            +A  G +  A   F    EKD ++W  M+     +GR ++A + F     S TE D   
Sbjct: 209 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFD----SRTEWDAIS 264

Query: 400 FLAILTACWYSGQVKLALNFFDSM 423
           + A++       Q++ A   F+ M
Sbjct: 265 WNALMAGYVQRSQIEEAQKMFNKM 288


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/626 (32%), Positives = 338/626 (53%), Gaps = 69/626 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           + +R++HA+++   L         L+S+ +    +  A   FD    ++LH+++ L+  +
Sbjct: 18  RAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAV 77

Query: 105 AENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           + +S  +  +     ML   ++RP+      ++ +   L  L LGR LH     S    D
Sbjct: 78  SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
             V+  L DMY + G  + A KVFD                       IG          
Sbjct: 138 NVVKSSLIDMYCKCGVPQDARKVFD----------------------SIGV--------- 166

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
               KN   W +LI G+   G   +A +LF+ MP  G+ +WTA+I+GF + G    A+ +
Sbjct: 167 ----KNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMGL 222

Query: 284 FFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           F +M    +R +D F + + +   A + AL  G ++H ++    F     +G ALVDMY+
Sbjct: 223 FVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQLHGFVMRLGFLSSMIVGNALVDMYS 282

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KC +I +A  VF     +D+++WT ++ G A HGR E+    + +M+ +G +P+   F+ 
Sbjct: 283 KCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRAEEVFALYNRMLLAGMKPNEVTFVG 342

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------YQ 454
           ++ AC ++G V+     FDSM+ +Y ++P V+H+T  ++LLSR G  S+         Y+
Sbjct: 343 LIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTCYLDLLSRSGYLSEAEKLITTMPYE 402

Query: 455 NSQNSF--------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
             + ++                      LL+L+PK PS+Y+LLSN+YA   +W  VA+VR
Sbjct: 403 PDEATWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVR 462

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKL--AKEIHSKLEDIMAGAREQGYMPGTE 552
            +M    I+K PG+S++E       F AG   L   +EI   LE++++  R++GY+P T 
Sbjct: 463 KIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVGEEITCFLEELVSEMRKRGYVPDTS 522

Query: 553 WVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            V+H+++E EKE+ L  HSE+LA+AFG++++ PG+ I++VK L +CGDCH++MK+ S I+
Sbjct: 523 SVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISAIA 582

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           QR+I++RD +RFH+F+DG CSC ++W
Sbjct: 583 QRKIIVRDASRFHHFEDGNCSCSEFW 608


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 223/670 (33%), Positives = 341/670 (50%), Gaps = 93/670 (13%)

Query: 47   LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            LR    Q +L   F SSR     +SS       + A   + +    N+H +N +I  LA 
Sbjct: 1069 LRVAEDQFLLG--FPSSRRRPVSLSS-------NLATWFYKYVDKSNVHSWNSVIADLAR 1119

Query: 107  NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                   +  F  + +L + P R ++P   KS ++L  L  GR  H      G E D FV
Sbjct: 1120 GGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFV 1179

Query: 167  RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------------ 208
               L DMY + G+ + A  +FDE P +N    V+ W  +I G                  
Sbjct: 1180 SSALIDMYSKCGQLKDARALFDEIPLRN----VVSWTSMITGYVQNEQADNALLLFKDFL 1235

Query: 209  -------------------------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDG 239
                                     CS++        + G + KK     +    +L+D 
Sbjct: 1236 EEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDA 1295

Query: 240  FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFT 298
            + + G    + ++F+ M EK  +SW +MI  ++Q+G + +AL +F  M+   GVR N  T
Sbjct: 1296 YAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVT 1355

Query: 299  VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
            + + L ACA  GAL AG  +H+ +   D      +GT+++DMY KCG +E A   F   K
Sbjct: 1356 LSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK 1415

Query: 359  EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            EK++ +WTAM+ G  +HGR ++A+  F KM+ +G +P+   F+++L AC ++G V+   +
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475

Query: 419  FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-----NSQNSFT------------ 461
            +F++M+  Y IEP ++H+  +V+L  R G  ++ Y        +  F             
Sbjct: 1476 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIH 1535

Query: 462  -----------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                       KL +L P +   YVLLSN+YA  GRW DV R+R LM+ R + K PG+S 
Sbjct: 1536 KNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSL 1595

Query: 511  IEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALG 567
            +E+ G VH F  G   H   + I+  LE +    ++ GY+P    VLH++ +EEKE  L 
Sbjct: 1596 VELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILR 1655

Query: 568  CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
             HSEKLA+AFG++ + PGTTI I+K L +CGDCH+++K  SK+  R+ V+RD+ RFH+FK
Sbjct: 1656 VHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFK 1715

Query: 627  DGTCSCRDYW 636
            DG CSC DYW
Sbjct: 1716 DGVCSCGDYW 1725



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 221/448 (49%), Gaps = 37/448 (8%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           T  + P+ NI  +  P  NI     + L+ +  + K LRQIHA+II   L     +T +L
Sbjct: 8   THDVFPSKNIPLT--PRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKL 65

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           I   S H  I YA+ +F          +N++IR    N   +  +  +  M+   +  ++
Sbjct: 66  IHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADK 125

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T+PFV K+  +   + LG+ +H  ++K G   D FV+ +L D Y + G TR A KVF  
Sbjct: 126 FTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF-- 183

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
             EK +  +V+ W  +I+G    G L++A  +F  +P KNV SW ++I+G++R       
Sbjct: 184 --EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR------- 234

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
                                   N + E+AL +F +M    +  N++T+VS + AC ++
Sbjct: 235 ------------------------NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G L  G  +H+Y   N   +   +GTAL+DMY+KCG+I+ A  VF     K L TW +MI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
             L +HG  ++A+  F +M     +PD   F+ +L AC +   VK    +F  M   Y I
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457
            P  +H+  +  L +R     + +++++
Sbjct: 391 APIPEHYECMTELYARSNNLDEAFKSTK 418


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  358 bits (920), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 214/665 (32%), Positives = 333/665 (50%), Gaps = 72/665 (10%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
           H   R  T+IA   +   S   S      H   L+ S      L QIHAQII+   F   
Sbjct: 25  HQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHH 83

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
              T LI+  SL    D A S+FD     +  ++N +IR    +  +   +  +      
Sbjct: 84  HSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMY------ 137

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
                                       +C++ K G+E D F+   L DMY ++G  + A
Sbjct: 138 ----------------------------YCMVEKGGLERDVFIGAGLVDMYSKMGDLKRA 169

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
            +VFD+ P+++    V+ WN +I G S+      A  +F  M  ++  SW +++ G+   
Sbjct: 170 REVFDKMPKRD----VVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHN 225

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G   +  ELF++M + G V+W  +I  + QNG A++A++ F QM       N  T VS L
Sbjct: 226 GCFVEVLELFDKM-KLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVL 284

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            A A + A   G+  H  I    F     +G +L+DMYAKCG ++ +  +F E   KD +
Sbjct: 285 PAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTV 344

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +W AM+ G A+HG  ++AI  F  M  S  + D   F+++L+AC ++G V+     F SM
Sbjct: 345 SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM 404

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QN 455
              Y I+P ++H+  +V+LL R G   ++ G+                          + 
Sbjct: 405 SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 464

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
            + +   L++L+P++P+ +V+LS+IYA  GRW D  + R+ M    +KK PG S++E+  
Sbjct: 465 GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 524

Query: 516 HVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEK 572
            VH F  G   H   + +H     ++    + GY+P    VL N++EE KE  L  HSE+
Sbjct: 525 KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 584

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+ F L+ T PG+TI+IVK L +C DCH+  K+ SKI+ R I++RD TRFH+F+DG CS
Sbjct: 585 LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 644

Query: 632 CRDYW 636
           C DYW
Sbjct: 645 CNDYW 649


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 230/674 (34%), Positives = 351/674 (52%), Gaps = 83/674 (12%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
           ++ +  ++AI   +   S   PS++      + L+    S  Q++QIHAQ++ H L  ++
Sbjct: 32  YISSNTSSAIWEPSGTSSFSLPSHST----FVQLLKKRPSLTQIKQIHAQVVTHGLAQNT 87

Query: 64  RITTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
            +   LI S    +++ +A  +FD F   P  + I+N++I+  ++    Q  +  F  ML
Sbjct: 88  SLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTI-IWNLMIQAYSKTPSSQESLYLFHQML 146

Query: 122 RLSVRP---NRLTYPFVSKSVAS-LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
               RP   ++ T+ FV  + +   +L   G  +H ++VK G E D FV   L +MY   
Sbjct: 147 AHG-RPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIF 205

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
            +   A +VFDE                                   MP+++V +W S++
Sbjct: 206 SRMVDAKRVFDE-----------------------------------MPQRDVITWTSVV 230

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRAND 296
            G+  +G+L +A ELF+ MP +  VSW  M+ G+  +    +AL  F  ML    V+ N+
Sbjct: 231 KGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNE 290

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
             +VS LSACA +GAL+ G  +H YI  N   L   I TAL+DMYAKCG I+ A  VF  
Sbjct: 291 AVLVSILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDG 350

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             ++DLLTWT+MI GL++HG   + +  F +M+  G +PD    L +L  C +SG V+  
Sbjct: 351 LHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEG 410

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------------- 455
           L+ F  M   + I P ++H+  +++LL R G+    ++                      
Sbjct: 411 LSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACR 470

Query: 456 -------SQNSFTKLLQLKP-KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                   +     + +L P  H   YVLLSN+YA+ G+W+ V +VR  M +R  +  PG
Sbjct: 471 IHGDVDLGERIINHIAELCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPG 530

Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG-AREQGYMPGTEWVLHNIKEE-KE 563
            S+IE++G VH F A    H    EI+ KL +++   + E GY+P T+ VL ++ EE KE
Sbjct: 531 CSWIEIDGVVHEFLAADKLHPRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKE 590

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
           +A+  HSEKLA+AFGL+ T  G TI+I K L  C DCHS MK  S +  REIV+RD +RF
Sbjct: 591 QAVSWHSEKLAVAFGLLSTQEG-TIRITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRF 649

Query: 623 HYFKDGTCSCRDYW 636
           H F+ G CSC DYW
Sbjct: 650 HTFRYGNCSCTDYW 663


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 192/506 (37%), Positives = 290/506 (57%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   YVQ G    A +VFD  PEKN     + WN +I G  +   + +A ELF
Sbjct: 184 DVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNS----VSWNAIIAGYVQCKRMDQARELF 239

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             MP +NV+SW ++I G+ + GD+ +A   F++MP++  +SW A+I G++Q+G  E+AL 
Sbjct: 240 EAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALH 299

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G R N  T  S LS CA++ ALE G +VH  +          +G AL+ MY 
Sbjct: 300 LFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYC 359

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCGNI+ A +VF   +EK++++W  MI G A HG  ++A+  F+ M  +G  PD    + 
Sbjct: 360 KCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVG 419

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS---- 456
           +L+AC ++G V     +F SM  DY I  + KH+T +++LL R G+  D+Q    +    
Sbjct: 420 VLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFE 479

Query: 457 ----------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                 + +   + +++P +   YVLLSN+YAA GRW DV R+R
Sbjct: 480 PDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMR 539

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             M+ R +KK PG+S++EV   +H F  G   H     I++ LE++    +++GY+  T+
Sbjct: 540 LRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYVSSTK 599

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEK   L  HSEKLA+AFG++    G  I+++K L +C DCH+ MK+ SKI 
Sbjct: 600 LVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHISKIV 659

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F  G CSC DYW
Sbjct: 660 GRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           YVQ G+   A ++F    E      ++ WN ++ G  K   L  A  +F  MP+++  SW
Sbjct: 102 YVQNGRIEDARRLF----ESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSW 157

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            ++I G+ + G+L +A  LFE+ P + V +WTAM++G+ QNG  ++A  +F    D    
Sbjct: 158 NTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVF----DGMPE 213

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  +  + ++   +   ++    +   + C +     +    ++  YA+ G+I  A   
Sbjct: 214 KNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV----SSWNTMITGYAQNGDIAQARNF 269

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           F    ++D ++W A+I G A  G  E+A+  F +M   G   + + F + L+ C
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTC 323



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 130/270 (48%), Gaps = 17/270 (6%)

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           L + +  E+D F+  H     V+    R A  +FD+ PE++    V+ WN +++G ++ G
Sbjct: 21  LQLHASPEFD-FLERHDLRGCVRYRNLRAARLLFDQMPERD----VVSWNAMLSGYAQNG 75

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
           Y+++A E+F  MP KN  SW  ++  +++ G ++ A  LFE   +  ++SW  M+ G+ +
Sbjct: 76  YVKEAKEIFDEMPCKNSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVK 135

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
                 A  +F +M +     ++ +  + +S  A+ G L    R+       D       
Sbjct: 136 RNRLVDARGIFDRMPE----RDEVSWNTMISGYAQNGELLEAQRLFEESPVRDV----FT 187

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
            TA+V  Y + G ++ A  VF    EK+ ++W A+I G     R +QA + F+ M     
Sbjct: 188 WTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV 247

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSM 423
               T    ++T    +G +  A NFFD M
Sbjct: 248 SSWNT----MITGYAQNGDIAQARNFFDRM 273



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 52/305 (17%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N+++   II+         Q R++   +   N+  SS  T  +I+  + +  I  A + F
Sbjct: 215 NSVSWNAIIAGYVQCKRMDQARELFEAMPCQNV--SSWNT--MITGYAQNGDIAQARNFF 270

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    ++   +  +I G A++ + +  +  FV M R   R NR T+     + A ++ L 
Sbjct: 271 DRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALE 330

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           LG+ +H  +VK+G+E   +V   L  MY + G    A+ VF+   EK     V+ WN +I
Sbjct: 331 LGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK----EVVSWNTMI 386

Query: 207 NGCSKIGYLRKAVELF------GMMPKK-------------------------------- 228
            G ++ G+ ++A+ LF      G++P                                  
Sbjct: 387 AGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGI 446

Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE---AEKALA 282
             N   +  +ID   R G L  A  L + MP E    +W A++     +G     EKA  
Sbjct: 447 TANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAK 506

Query: 283 MFFQM 287
           M F+M
Sbjct: 507 MIFEM 511



 Score = 39.3 bits (90), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 48/251 (19%), Positives = 102/251 (40%), Gaps = 10/251 (3%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T T  +S      + +  +Q+H +++   L +   +   L+       +ID A  +F
Sbjct: 312 NRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVF 371

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    K +  +N +I G A +   +  +  F  M +  + P+ +T   V  + +   L+ 
Sbjct: 372 EGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVD 431

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES--VLLWN 203
            G    + +    G+  ++     + D+  + G+   A  +    P +  + +   LL  
Sbjct: 432 KGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGA 491

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-- 261
             I+G +++G   KA ++   M   N   +V L + +   G     G +  +M ++GV  
Sbjct: 492 SRIHGNTELG--EKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKK 549

Query: 262 ---VSWTAMIN 269
               SW  + N
Sbjct: 550 VPGYSWVEVQN 560


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 217/630 (34%), Positives = 338/630 (53%), Gaps = 73/630 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIF-DHFTPKNLHIFNVLI 101
           KQ ++ H Q+I++ L         +IS ++L  S  IDYAL +     TP  + +FN  I
Sbjct: 2   KQFKEAHTQLIINGLTHPPPSLRPIISFSALDPSGDIDYALLLLLRTSTPPTVFLFNTTI 61

Query: 102 RGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
           RG +      S +S  +  +R   LS+ PN  T+ F+ +  ++     LGR  H +++K+
Sbjct: 62  RGFSRARRPGSLLSSVLLFVRMGVLSLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIKN 121

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
             E D FVR  +   Y   G+   A  VFDE+ E +    V+ WN +I+GC + G + +A
Sbjct: 122 SFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELD----VVSWNSMIDGCIRNGNILEA 177

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           + LF  M ++N  SW  +I G+ + G  K+A  LF +M                      
Sbjct: 178 LSLFSKMTERNDISWNMMISGYAQNGQPKEALALFREM---------------------- 215

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
                  QMLD     N   +VS LSAC+++GAL+ G  VH YI      +   +  AL+
Sbjct: 216 -------QMLDQ--EPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSILSAALI 266

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMYAKCG+I+ A   F  ++++D+  +TA I GLA++G  E+A+Q F++M   G  PDG 
Sbjct: 267 DMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGV 326

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------ 452
            ++A+L AC ++G V+   ++F SM   + I P + H+  +V+LL R G   +       
Sbjct: 327 SYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVAS 386

Query: 453 -------------------YQNS---QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                              Y N+   Q   + L++    H   Y+LLSNIYA   + +D 
Sbjct: 387 MPIKPDNVIWGALLGACRVYGNAEMGQRVGSLLVESDQNHDGRYILLSNIYAESMKGEDA 446

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
            +VR  M+RR + + PG S IEV G VH F +G   H+  +EI+   E+I+   ++ GY 
Sbjct: 447 EQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSGDRSHEKTEEIYLMWEEIVKEIKKFGYR 506

Query: 549 PGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
             T  V+ +++EE++EA +G HSEKLA+AFG + T  G+T++IVK + IC DCH  +K  
Sbjct: 507 EETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFLYTKSGSTLRIVKNIRICSDCHYAIKLV 566

Query: 608 SKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           SK+ +R+I +RD + FH+F++G CSC+DYW
Sbjct: 567 SKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 215/638 (33%), Positives = 342/638 (53%), Gaps = 73/638 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFTPKNLH 95
           L+ S  S +Q++Q+HA++I   L      T +L+   +S+   I YA  +FDHF   +L 
Sbjct: 7   LLSSCKSFRQIKQVHARLITTGLILHPIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLF 66

Query: 96  IFNVLIRGLA-ENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           ++N +I+ LA   +      + F  ++R   + PN+ ++ F  K   S   +  G  +  
Sbjct: 67  LYNTIIKVLAFSTTSSADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRV 126

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
             +K G+E + FV   L  MYV L     A KVFD             W+          
Sbjct: 127 HAIKLGLENNLFVTNALIGMYVNLDFVVDARKVFD-------------WS---------- 163

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                       P +++ SW  ++ G+ R G + +A +LF++MPEK VVSWT MI+G  Q
Sbjct: 164 ------------PNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQ 211

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
            G   +AL +F  ML  G+  N++T+ S+L+ACA + AL+ G  +H YI  N+  +   +
Sbjct: 212 VGYFMEALDIFHNMLAKGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERL 271

Query: 334 GTALVDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
              L+DMYAKCG +E AS +F      ++ +  W AMI G A+HG+ ++AI+ F++M   
Sbjct: 272 LAGLIDMYAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIE 331

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
              P+   F+A+L AC +  +V+    +F+SM   Y ++P ++H+  +V+LL R G+  +
Sbjct: 332 KVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKE 391

Query: 452 G-------------------------YQNSQ--NSFTKLL-QLKPKHPSSYVLLSNIYAA 483
                                     +++++      K++ +L P H   +VLL+NIY+ 
Sbjct: 392 AEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVKELDPNHLGCHVLLANIYSL 451

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
            G W +   +R  +     KK PG S IE+NG  H+F  G   H   K+++  L++++  
Sbjct: 452 TGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGDRSHPQTKQLYLFLDEMITK 511

Query: 542 AREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
            +  GY+P +  VL +I   E++E AL  HSEKLA+AFGL+ TTP T I+IVK L +C D
Sbjct: 512 LKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLMNTTPKTPIRIVKNLRVCSD 571

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CH  +K+ SK+  REI++RD  R+H+FKDGTCSC DYW
Sbjct: 572 CHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  358 bits (919), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 207/657 (31%), Positives = 344/657 (52%), Gaps = 74/657 (11%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IHA +  +   +   I+   ++     +S++     F     +NL   N L+ G  +   
Sbjct: 112 IHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTET 171

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
                   + +L     PN  T+  + K+ AS   L+ G+ +H  ++KSG+  D+ +   
Sbjct: 172 CDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNS 231

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY---LRKAVELFGMMP 226
           L ++Y + G    A KVF E PE++    V+ W  LI G    GY   LR   ++     
Sbjct: 232 LVNVYAKCGSANYACKVFGEIPERD----VVSWTALITGFVAEGYGSGLRIFNQMLAEGF 287

Query: 227 KKNVASWVS-----------------------------------LIDGFMRKGDLKKAGE 251
             N+ +++S                                   L+D + +   L+ A  
Sbjct: 288 NPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAET 347

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F ++ ++ + +WT ++ G++Q+G+ EKA+  F QM   GV+ N+FT+ S+LS C+++  
Sbjct: 348 IFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIAT 407

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           L++G ++H+            + +ALVDMYAKCG +E A +VF     +D ++W  +I G
Sbjct: 408 LDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICG 467

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            + HG+  +A++ F+ M+  GT PD   F+ +L+AC + G ++     F+S+   Y I P
Sbjct: 468 YSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITP 527

Query: 432 SVKHHTVVVNLLSRVGQDSQ----------------------------GYQNSQNSFTKL 463
           +++H+  +V++L R G+  +                              +  + +  KL
Sbjct: 528 TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKL 587

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA- 522
            +L+P+  S+Y+LLSN++AA+G W DV  VR LM  R +KK+PG S++EVNG VH F + 
Sbjct: 588 FELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSH 647

Query: 523 -GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLI 580
            G H   +EIH KL+D+       GY P T+ VLHN+ + EK+E L  HSE+LALAF L+
Sbjct: 648 DGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALL 707

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
            T+   TI+I K L ICGDCH  MK  S+I+ +E+V+RD   FH+FK+G+CSC+++W
Sbjct: 708 STSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 175/396 (44%), Gaps = 36/396 (9%)

Query: 47  LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           L++I  ++I + +   S + + L++     +S+  A  + +    +++  +N  +     
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANS 67

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
               Q  +  F  M    +R N+  +  +  + ASL     G  +H  + K G E D  +
Sbjct: 68  PYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILI 127

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKN------------KSESV-----LLWNVLING- 208
                 MY++       ++ F     +N             +E+      +L  +L+ G 
Sbjct: 128 SNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGF 187

Query: 209 -------------CSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGE 251
                        C+  G L +   + G + K  +      W SL++ + + G    A +
Sbjct: 188 EPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACK 247

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F ++PE+ VVSWTA+I GF   G     L +F QML  G   N +T +S L +C+ +  
Sbjct: 248 VFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSD 306

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           ++ G +VH  I  N       +GTALVDMYAK   +E A  +F    ++DL  WT ++ G
Sbjct: 307 VDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAG 366

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            A  G+ E+A++ F +M   G +P+     + L+ C
Sbjct: 367 YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 402



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 146/351 (41%), Gaps = 73/351 (20%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           IS++ S +S   +   +Q+HAQI+ ++L  +  + T L+   + ++ ++ A +IF+    
Sbjct: 295 ISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIK 354

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           ++L  + V++ G A++   +  +  F+ M R  V+PN  T        + ++ L  GR L
Sbjct: 355 RDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL 414

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H + +K+G   D FV   L DMY + G    A  VFD                       
Sbjct: 415 HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFD----------------------- 451

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                      G++ +  V SW ++I G+ + G   KA + FE M ++G V         
Sbjct: 452 -----------GLVSRDTV-SWNTIICGYSQHGQGGKALKAFEAMLDEGTV--------- 490

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
                                  ++ T +  LSAC+ +G +E G +  N +S   +G+  
Sbjct: 491 ----------------------PDEVTFIGVLSACSHMGLIEEGKKHFNSLS-KIYGITP 527

Query: 332 AIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYE 379
            I     +VD+  + G          E K   ++L W  ++    +HG  E
Sbjct: 528 TIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIE 578



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 87/191 (45%), Gaps = 2/191 (1%)

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           G+ P  ++  W SL++ +++   L+ A ++ E+MP + V  W   ++  +     ++A+ 
Sbjct: 19  GICPDSHL--WSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQ 76

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F+ M    +R N F   S +SA A +G    G  +H  +    F     I  A V MY 
Sbjct: 77  LFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYM 136

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           K  ++E     F     ++L +   ++ G       +Q  +   +++  G EP+   F++
Sbjct: 137 KTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFIS 196

Query: 403 ILTACWYSGQV 413
           IL  C   G +
Sbjct: 197 ILKTCASKGDL 207


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 208/644 (32%), Positives = 331/644 (51%), Gaps = 79/644 (12%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL++S N+ + L   R+IH+ I    L     +   LI+      S+  A  IFD  + 
Sbjct: 262 VSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSK 321

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYPFVSKSVASLSLLS 146
           +++  ++ +I G A++ +        VF L     R  V PN++T+  + ++  +   L 
Sbjct: 322 RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  + K G E D  ++  + +MY                                
Sbjct: 382 QGRQIHAELSKVGFELDRSLQTAIFNMY-------------------------------- 409

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
              +K G + +A ++F  M  KNV +W S +  +++ GDL  A ++F +MP + VVSW  
Sbjct: 410 ---AKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNL 466

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G++QNG+  K   +   M   G + +  TV++ L AC  +  LE G  VH       
Sbjct: 467 MIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVH--AEAVK 524

Query: 327 FGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
            GL+    + T+L+ MY+KCG +  A  VF +   +D + W AM+ G   HG   +A+  
Sbjct: 525 LGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQHGDGLEAVDL 584

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           FK+M+     P+     A+++AC  +G V+     F  M+ D+ + P  +H+  +V+LL 
Sbjct: 585 FKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLG 644

Query: 445 RVG--QDSQGY--------------------------QNSQNSFTKLLQLKPKHPSSYVL 476
           R G  Q+++ +                          Q ++ +   +L+L+P + S Y+ 
Sbjct: 645 RAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASVYIT 704

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSK 534
           LSNIYA  GRW D  +VR +M  R +KKD G S IE++G +H F  E   H     IH++
Sbjct: 705 LSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDAIHAE 764

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LE +    +E GY P   +VLH++ + +KE+AL  HSEKLA+A+GL++T  GT I+I+K 
Sbjct: 765 LETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPSGTPIRIMKN 824

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +CGDCH+  K+ SKI +REIV RD  RFHYF +GTCSC D+W
Sbjct: 825 LRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 113/438 (25%), Positives = 197/438 (44%), Gaps = 86/438 (19%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           KQL ++  +I ++       +   LI+  S  + +  A  +F   T +++  ++ +I   
Sbjct: 80  KQLDELGVEIDIY-------LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAY 132

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           A N+H       F  M   ++ PNR+T+  + K+  + S+L  GR +H ++   G+E D 
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDV 192

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            V   L  MY + G+   A +VF +  E+N    V+ W  +I   ++   L +A EL+  
Sbjct: 193 AVATALITMYSKCGEISVACEVFHKMTERN----VVSWTAIIQANAQHRKLNEAFELYEQ 248

Query: 225 MPK----KNVASWVSLIDG-----------------------------------FMRKGD 245
           M +     N  ++VSL++                                    + +   
Sbjct: 249 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLD----AGVRANDFTVV 300
           +++A E+F++M ++ V+SW+AMI G++Q+G  +K ++   FQ+L+     GV  N  T +
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L AC   GALE G ++H  +S   F L  ++ TA+ +MYAKCG+I  A  VF +   K
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANK 428

Query: 361 DLLTWTA-------------------------------MIWGLAIHGRYEQAIQYFKKMM 389
           +++ WT+                               MI G A +G   +  +    M 
Sbjct: 429 NVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMK 488

Query: 390 YSGTEPDGTVFLAILTAC 407
             G +PD    + IL AC
Sbjct: 489 AEGFQPDRVTVITILEAC 506



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 143/284 (50%), Gaps = 16/284 (5%)

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA------VELFGMMPKKNVASWVSL 236
           AF  F+   + N   + + +  ++  C+    L K       V+  GM  + +VA   +L
Sbjct: 141 AFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGM--ETDVAVATAL 198

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I  + + G++  A E+F +M E+ VVSWTA+I   +Q+ +  +A  ++ QML AG+  N 
Sbjct: 199 ITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNA 258

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T VS L++C    AL  G R+H++IS         +  AL+ MY KC +++ A  +F  
Sbjct: 259 VTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDR 318

Query: 357 TKEKDLLTWTAMIWGLAIHG-----RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
             ++D+++W+AMI G A  G       ++  Q  ++M   G  P+   F++IL AC   G
Sbjct: 319 MSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHG 378

Query: 412 QVKLALNFFDSM-RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
            ++        + +  + ++ S++  T + N+ ++ G   +  Q
Sbjct: 379 ALEQGRQIHAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQ 420



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/232 (24%), Positives = 105/232 (45%), Gaps = 12/232 (5%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           +T I ++     S  +  Q+ +++   N+ A +   +  I    L      A  +F    
Sbjct: 402 QTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSS----AEKVFSEMP 457

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            +N+  +N++I G A+N            M     +P+R+T   + ++  +L+ L  G+ 
Sbjct: 458 TRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKL 517

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H   VK G+E D  V   L  MY + G+   A  VFD+   ++     + WN ++ G  
Sbjct: 518 VHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRD----TVAWNAMLAGYG 573

Query: 211 KIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPE 258
           + G   +AV+LF  M K+ V+    +  ++I    R G +++  E+F  M E
Sbjct: 574 QHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQE 625



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 4/135 (2%)

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI- 333
           G   +A+ +   +   G+  N  T    +  CAK    E G  VH  +  ++ G++  I 
Sbjct: 35  GRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQL--DELGVEIDIY 92

Query: 334 -GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
            G +L++ Y+K  ++ +A  VF     +D++TW++MI   A +    +A   F++M  + 
Sbjct: 93  LGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 393 TEPDGTVFLAILTAC 407
            EP+   FL+IL AC
Sbjct: 153 IEPNRITFLSILKAC 167



 Score = 41.2 bits (95), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 47/270 (17%), Positives = 108/270 (40%), Gaps = 43/270 (15%)

Query: 34  IISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           +I+++ +  +   L +   +HA+ +   L + + + T LI   S    +  A ++FD  +
Sbjct: 499 VITILEACGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMS 558

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            ++   +N ++ G  ++      +  F  ML+  V PN +T   V  + +   L+  GR 
Sbjct: 559 NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGRE 618

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +  ++ +                             F  TP K        +  +++   
Sbjct: 619 IFRMMQED----------------------------FKMTPRKQH------YGCMVDLLG 644

Query: 211 KIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL----KKAGELFEQMPEKGVVSWT 265
           + G L++A E    MP + +++ W +L+       ++    + A  + E  P    V + 
Sbjct: 645 RAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELEPSYASV-YI 703

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
            + N ++Q G  + +  +   M D G++ +
Sbjct: 704 TLSNIYAQAGRWDDSTKVRRVMDDRGLKKD 733


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  358 bits (918), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 221/678 (32%), Positives = 352/678 (51%), Gaps = 71/678 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   ++S + S  +    +++HAQ +     +S  +   L++  +    ++ A S+F
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVF 259

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    +++  +N L+ GL  N      +  F        +  + TY  V K  A+L  L+
Sbjct: 260 NWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L R LH  ++K G      V   LAD Y + G+   A  +F  T     S +V+ W  +I
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMT---TGSRNVVSWTAII 376

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV-----------------------------------A 231
           +GC + G +  AV LF  M +  V                                   +
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPS 436

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              +L+  + + G  + A  +F+ + +K VV+W+AM++  +Q G+ E A  +F +M   G
Sbjct: 437 VGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQG 496

Query: 292 VRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           ++ N+FT+ S + ACA   A ++ G + H       +     + +ALV MY++ GNI++A
Sbjct: 497 IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA 556

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
            +VF    ++DL++W +MI G A HG   +AI+ F++M  SG + DG  FLA++  C ++
Sbjct: 557 QIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHN 616

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ------------------- 451
           G V     +FDSM  D+ I P+++H+  +V+L SR G+  +                   
Sbjct: 617 GLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676

Query: 452 ---------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                      +  + S  KLL L+P   S+YVLLSNIYAA G+WK+   VR LM  R +
Sbjct: 677 LLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKV 736

Query: 503 KKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+ G S+I++   VH F A    H ++ +I+ KL+ I+   ++ GY P T +VLH+I E
Sbjct: 737 KKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAE 796

Query: 561 EKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           +++EA L  HSE+LALAFGLI T PGT ++IVK L +CGDCH +MK  S I  REI++RD
Sbjct: 797 DQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRD 856

Query: 620 -TRFHYFKDGTCSCRDYW 636
            +RFH+F  G CSC D+W
Sbjct: 857 CSRFHHFNGGACSCGDFW 874



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 175/410 (42%), Gaps = 48/410 (11%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+   + +F+    KN+  +  L+ G A        ++ F  M    + PN  T+  V  
Sbjct: 150 SVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLS 209

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +VAS   L LG+ +H   VK G     FV   L +MY + G    A  VF+    ++   
Sbjct: 210 AVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRD--- 266

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWV---------------- 234
            ++ WN L+ G        +A++LF       G M +   A+ +                
Sbjct: 267 -MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLH 325

Query: 235 ----------------SLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
                           +L D + + G+L  A  +F      + VVSWTA+I+G  QNG+ 
Sbjct: 326 SCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
             A+ +F +M +  V  N+FT  + L A   +       ++H  +   ++    ++GTAL
Sbjct: 386 PLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPSVGTAL 441

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           +  Y+K G+ E A  +F   ++KD++ W+AM+   A  G  E A   F KM   G +P+ 
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNE 501

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
               +++ AC            F ++   Y    ++   + +V++ SR G
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKG 551



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           +  V++  SL+D +M+ G + +  E+FE MP+K VV+WT+++ G +      + +A+FF+
Sbjct: 132 RGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKC 344
           M   G+  N FT  S LSA A  GAL+ G RVH       FG + +  +  +L++MYAKC
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVH--AQSVKFGCRSSVFVCNSLMNMYAKC 249

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +E A  VF   + +D+++W  ++ GL ++    +A+Q F +   +  +   + +  ++
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVI 309

Query: 405 TACWYSGQVKLA 416
             C    Q+ LA
Sbjct: 310 KLCANLKQLALA 321



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 28/209 (13%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP+     + I +    S    Q RQ HA  I +    +  +++ L+S  S   +ID A 
Sbjct: 498 KPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQ 557

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F+  T ++L  +N +I G A++ +    I  F  M    ++ + +T+         L+
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTF---------LA 608

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH-----------LADMYVQLGKTRGAFKVFDETPE 192
           ++ +G   + L+V+    +D+ VR H           + D+Y + GK      +  + P 
Sbjct: 609 VI-MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMP- 666

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVEL 221
                  ++W  L+  C     + K VEL
Sbjct: 667 --FPAGAMVWRTLLGACR----VHKNVEL 689


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  358 bits (918), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 338/647 (52%), Gaps = 109/647 (16%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           + YA+S+F+     N  I+N++ RG A +S   S +  +V M+ L + PN  T+PF+ KS
Sbjct: 25  LPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKS 84

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---- 194
            A       G+ +H  ++K G + D +V   L  MY Q G+   A KVFD +  ++    
Sbjct: 85  CAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSY 144

Query: 195 -----------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
                                    + V+ WN +I+G ++ G  +KA+ELF  M K NV 
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 232 --------------------------SWV-------------SLIDGFMRKGDLKKAGEL 252
                                     SW+             +LID + + G+++ A EL
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
            E +  K V+SW  +I G++     ++AL +F +ML +G   ND T++S L ACA +GA+
Sbjct: 265 LEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 324

Query: 313 EAGVRVHNYISCNDFGLKGAI-------GTALVDMYAKCGNIEAASLVFGETK-EKDLLT 364
           + G  +H YI   D  LKG +        T+L+DMYAKCG+I+AA  V   +   + L T
Sbjct: 325 DIGRWIHVYI---DKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLST 381

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI+G A+HGR   A   F +M  +G EPD   F+ +L+AC +SG + L  N F SMR
Sbjct: 382 WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMR 441

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQ------------------------- 457
            DY I P ++H+  +++LL   G  ++++   N+                          
Sbjct: 442 QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELG 501

Query: 458 NSFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD-PGWSYIEVNG 515
            SF K L++++P++P SYVLLSNIYA  G+W +V ++RTL+  + +KK  PG S IE++ 
Sbjct: 502 ESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDS 561

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEK 572
            VH F  G   H   +EI+  LE++     E G++P T  VL  ++EE KE AL  HSEK
Sbjct: 562 VVHEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEK 621

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           LA+AFGLI T PGT + IVK L +C +CH   K  SKI +REI+ RD
Sbjct: 622 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARD 668



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 163/382 (42%), Gaps = 52/382 (13%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T LI+  +    I+ A  +FD    K++  +N +I G AE  +++  +  F  M++ +V+
Sbjct: 145 TALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVK 204

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+  T   V  + A    + LGR +H  I   G   +  +   L D+Y + G+   A ++
Sbjct: 205 PDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACEL 264

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------ 228
            +    K+    V+ WN LI G + +   ++A+ LF  M +                   
Sbjct: 265 LEGLSNKD----VISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAH 320

Query: 229 ----NVASWV---------------------SLIDGFMRKGDLKKAGELFEQMP-EKGVV 262
               ++  W+                     SLID + + GD+  A ++ +     + + 
Sbjct: 321 LGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLS 380

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W AMI GF+ +G A  A  +F +M   G+  +D T V  LSAC+  G L+ G  +   +
Sbjct: 381 TWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSM 440

Query: 323 SCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
              D+ +   +     ++D+    G   EA  ++     E D + W +++    IHG  E
Sbjct: 441 R-QDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLE 499

Query: 380 QAIQYFKKMMYSGTEPDGTVFL 401
               + KK++    E  G+  L
Sbjct: 500 LGESFAKKLIKIEPENPGSYVL 521



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 133/310 (42%), Gaps = 20/310 (6%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K++ KP  +   T ++S    S S +  RQ+H+ I  H   ++ +I   LI   S    
Sbjct: 199 MKTNVKPDESTMAT-VVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGE 257

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  + +  + K++  +N LI G    + ++  +  F  MLR    PN +T   +  +
Sbjct: 258 VETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA 317

Query: 139 VASLSLLSLGRGLHCLIVKS----GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
            A L  + +GR +H  I K      V   + +R  L DMY + G    A +V D +   N
Sbjct: 318 CAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSS-AFN 376

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAG 250
           +S S   WN +I G +  G    A ++F  M K  +     ++V L+      G L    
Sbjct: 377 RSLST--WNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR 434

Query: 251 ELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
            +F  M +   ++     +  MI+    +G  ++A  M   M    +  +     S L A
Sbjct: 435 NIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTM---PMEPDGVIWCSLLKA 491

Query: 306 CAKVGALEAG 315
           C   G LE G
Sbjct: 492 CKIHGNLELG 501


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  357 bits (917), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 220/648 (33%), Positives = 336/648 (51%), Gaps = 79/648 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIF 86
           I +   IS++    + ++L+QIH Q++++ L    ++  Q ++S +L+   ++ Y+  + 
Sbjct: 7   IVKHPTISMVEPCTTLRELKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVL 66

Query: 87  DHFTPKNLHIFNVLIRGLAENS------HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           D+     L  FN +IR  +++S      HF S I H    L     P+  T+ F+ ++ A
Sbjct: 67  DNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLA----PDNYTFTFLVRTSA 122

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L     G  +H   VK G EYD  V+  L  MY +LG      +VF    E +    ++
Sbjct: 123 QLLAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSICEPD----LV 178

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
               +++ C+K+G +                       GF RK        LF++M  K 
Sbjct: 179 CQTAMVSACAKMGDV-----------------------GFARK--------LFDKMSHKD 207

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            ++W AMI+G+ Q G++ +AL++F  M   GV+ N+ ++VS LSAC+ +GAL+ G   H 
Sbjct: 208 PIAWNAMISGYVQCGQSREALSLFNLMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHA 267

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI  N   +   +GTAL+DMYAKCGN+  A  VF   KEK++ TW++ I GLA++G  E+
Sbjct: 268 YIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEK 327

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
            ++ F  M     +P+   F+++L  C   G V+     F+SM   Y IEP ++H+  +V
Sbjct: 328 CLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMV 387

Query: 441 NLLSRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPS 472
           +L  R G   +                          Y+N    + +  K+++L+ K+  
Sbjct: 388 DLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEAKNHG 447

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           +YVLLSNIYA    W  V+ VR  M  + ++K PG S IEV G VH F  G   H    E
Sbjct: 448 AYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHPRYAE 507

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I   L +I    +  GY+  T  V  +I+EE KE+AL  HSEK+A+AFGLI  +P   I+
Sbjct: 508 IQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPDVPIR 567

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH   K  SK   REIV+RD  RFH+F+DG CSC+ YW
Sbjct: 568 IVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 15/243 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N ++   ++S      +  Q R  HA I  + L  +  + T LI   +   +++ A+ +F
Sbjct: 242 NEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVF 301

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                KN++ ++  I GLA N   + C+  F  M + SV+PN +T+  V +  + + L+ 
Sbjct: 302 WGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVE 361

Query: 147 LGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            GR     +    G+E        + D+Y + G    A    +  P +     V  W  L
Sbjct: 362 EGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVR---PHVGAWGAL 418

Query: 206 INGCS-----KIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           +N C      ++G L  RK VEL      KN  ++V L + +    D  +   + + M  
Sbjct: 419 LNACKIYRNMEMGELASRKIVEL----EAKNHGAYVLLSNIYADSKDWDRVSNVRQTMNV 474

Query: 259 KGV 261
           KGV
Sbjct: 475 KGV 477


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 334/644 (51%), Gaps = 105/644 (16%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H+PS     TH   L+H+  S  +L+Q+HA ++  N   SS   +++ S  + + S  YA
Sbjct: 15  HRPS-----TH---LLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYA 66

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             IF       +  +N  +R  AE       IS F  +    + P+  T  FV K+ + L
Sbjct: 67  KLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL 126

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G+ +H  + K G++ + F++  +  +Y   G+   A KVFD+             
Sbjct: 127 LDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDK------------- 173

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                                 MP+++V +W  +I   ++ GD + A +LF +MPE+ V 
Sbjct: 174 ----------------------MPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVR 211

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SWT+MI G++Q G++++A+ +F +M DAG+  N+ TVV+ L ACA +G L  G R+H++ 
Sbjct: 212 SWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACADMGNLVLGRRIHDFS 271

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           + + +     +   L+DMY KCG +E A  +F   +E+ +++W+AMI GLA HGR E A+
Sbjct: 272 NRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAMIAGLAAHGRAEDAL 331

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F KM+ +G +P+   F+ IL AC + G V+    +F SM  DY I P ++H+  +V+L
Sbjct: 332 ALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDL 391

Query: 443 LSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSY 474
            SR G   + ++   N                            +   L +L P +   Y
Sbjct: 392 FSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNVKLAEEATRHLSKLDPLNDGYY 451

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSK 534
           V+LSNIYA  GRW+DVARVR LM+ R       W                          
Sbjct: 452 VVLSNIYAEAGRWEDVARVRKLMRDRGT-----W-------------------------- 480

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
            E ++   + +GY+P T  VL +++E+ KE+ L  HSEKLA+ FGLI+TTPGT I+I+K 
Sbjct: 481 -EKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKN 539

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +C DCH+ +K  S +S REIV+RD  RFH FK+G+CSC DYW
Sbjct: 540 LRVCEDCHAALKIISVVSTREIVVRDRNRFHCFKNGSCSCGDYW 583


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  357 bits (917), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 333/644 (51%), Gaps = 79/644 (12%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +SL++S N+ + L   R+IH+ I    L     +   LI+       I  A   FD  + 
Sbjct: 284 VSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSK 343

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFML-----RLSVRPNRLTYPFVSKSVASLSLLS 146
           +++  ++ +I G A++ +        VF L     R  V PN++T+  + K+ +    L 
Sbjct: 344 RDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALE 403

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  I K G E D  ++  + +MY                                
Sbjct: 404 QGRQIHAEISKVGFESDRSLQTAIFNMY-------------------------------- 431

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
              +K G + +A ++F  M  KNV +W SL+  +++ GDL  A ++F +M  + VVSW  
Sbjct: 432 ---AKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNL 488

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G++Q+G+  K   +   M   G + +  T++S L AC  + ALE G  VH       
Sbjct: 489 MIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVH--AEAVK 546

Query: 327 FGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
            GL+    + T+L+ MY+KCG +  A  VF +   +D + W AM+ G   HG   +A+  
Sbjct: 547 LGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDL 606

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           FK+M+     P+   F A+++AC  +G V+     F  M+ D+ ++P  +H+  +V+LL 
Sbjct: 607 FKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLG 666

Query: 445 RVG--QDSQGY--------------------------QNSQNSFTKLLQLKPKHPSSYVL 476
           R G  Q+++ +                          Q ++ +   +L+L+P + S YV 
Sbjct: 667 RAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLEPSNASVYVT 726

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSK 534
           LSNIYA  GRW D  +VR +M  + +KKD G S IE++G +H F  E   H     IH++
Sbjct: 727 LSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAHPEIDSIHAE 786

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LE +    +E GY P   +VLH++ E +KE AL  HSEKLA+A+GL++T PGT I+I+K 
Sbjct: 787 LEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPPGTPIRIMKN 846

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +CGDCH+  K+ SKI +REIV RD  RFHYFK+GTCSC D+W
Sbjct: 847 LRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/435 (25%), Positives = 190/435 (43%), Gaps = 79/435 (18%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H Q+    L     +   LI+  S    +     +F   T +++  ++ +I   A N
Sbjct: 98  KMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGN 157

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
           +H       F  M   ++ PNR+T+  + K+  + S+L   R +H ++  SG+E D  V 
Sbjct: 158 NHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVA 217

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G+   A ++F +  E+N    V+ W  +I   ++   L +A EL+  M +
Sbjct: 218 TALITMYSKCGEISLACEIFQKMKERN----VVSWTAIIQANAQHRKLNEAFELYEKMLQ 273

Query: 228 ----KNVASWVSLIDG-----------------------------------FMRKGDLKK 248
                N  ++VSL++                                    + +   ++ 
Sbjct: 274 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQD 333

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLD----AGVRANDFTVVSAL 303
           A E F++M ++ V+SW+AMI G++Q+G  +K +L   FQ+L+     GV  N  T +S L
Sbjct: 334 ARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSIL 393

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI---------------- 347
            AC+  GALE G ++H  IS   F    ++ TA+ +MYAKCG+I                
Sbjct: 394 KACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453

Query: 348 ---------------EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
                           +A  VF E   +++++W  MI G A  G   +  +    M   G
Sbjct: 454 AWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEG 513

Query: 393 TEPDGTVFLAILTAC 407
            +PD    ++IL AC
Sbjct: 514 FQPDRVTIISILEAC 528



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 204/448 (45%), Gaps = 39/448 (8%)

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLID 238
           AF  F+   + N   + + +  ++  C+    L KA E+  ++     + +VA   +LI 
Sbjct: 163 AFDTFERMKDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALIT 222

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + + G++  A E+F++M E+ VVSWTA+I   +Q+ +  +A  ++ +ML AG+  N  T
Sbjct: 223 MYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVT 282

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
            VS L++C    AL  G R+H++IS         +  AL+ MY KC  I+ A   F    
Sbjct: 283 FVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMS 342

Query: 359 EKDLLTWTAMIWGLAIHG-----RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           ++D+++W+AMI G A  G       ++  Q  ++M   G  P+   F++IL AC   G +
Sbjct: 343 KRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGAL 402

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS 473
           +        +    F E      T + N+ ++ G   +  Q     F+K   ++ K+  +
Sbjct: 403 EQGRQIHAEISKVGF-ESDRSLQTAIFNMYAKCGSIYEAEQ----VFSK---MENKNVVA 454

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHS 533
           +  L  +Y   G      +V + M  R++     W+ +            G+  + +I +
Sbjct: 455 WASLLTMYIKCGDLTSAEKVFSEMSTRNV---VSWNLM----------IAGYAQSGDI-A 500

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIK-----EEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           K+ ++++  + +G+ P    ++  ++        E     H+E  A+  GL   T   T 
Sbjct: 501 KVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAE--AVKLGLESDTVVAT- 557

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIV 616
            ++   + CG+         KIS R+ V
Sbjct: 558 SLIGMYSKCGEVTEARTVFDKISNRDTV 585



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 119/229 (51%), Gaps = 5/229 (2%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           SLI+ + + GD+    ++F +M  + VV+W++MI  ++ N    KA   F +M DA +  
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  T +S L AC     LE    +H  +  +      A+ TAL+ MY+KCG I  A  +F
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            + KE+++++WTA+I   A H +  +A + ++KM+ +G  P+   F+++L +C       
Sbjct: 238 QKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC----NTP 293

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
            ALN    +   +  E  ++   VV N L  +       Q+++ +F ++
Sbjct: 294 EALNRGRRIH-SHISERGLETDVVVANALITMYCKCNCIQDARETFDRM 341



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 93/203 (45%), Gaps = 8/203 (3%)

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  ++A+ +   +   G+  N  T    +  CAK+   E G  VH  +      +   +G
Sbjct: 57  GRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLG 116

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            +L++ Y+K G++ +   VF     +D++TW++MI   A +    +A   F++M  +  E
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   FL+IL AC     ++ A      ++    +E  V   T ++ + S+ G+ S   +
Sbjct: 177 PNRITFLSILKACNNYSMLEKAREIHTVVKAS-GMETDVAVATALITMYSKCGEISLACE 235

Query: 455 NSQN-------SFTKLLQLKPKH 470
             Q        S+T ++Q   +H
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQH 258



 Score = 45.8 bits (107), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 44/239 (18%), Positives = 103/239 (43%), Gaps = 18/239 (7%)

Query: 34  IISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           IIS++ +  +   L +   +HA+ +   L + + + T LI   S    +  A ++FD  +
Sbjct: 521 IISILEACGALSALERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKIS 580

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            ++   +N ++ G  ++      +  F  ML+  V PN +T+  V  +     L+  GR 
Sbjct: 581 NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGRE 640

Query: 151 LHCLI-----VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           +  ++     +K G ++       + D+  + G+ + A +     P +     + +W+ L
Sbjct: 641 IFRIMQEDFRMKPGKQHYGC----MVDLLGRAGRLQEAEEFIQRMPCE---PDISVWHAL 693

Query: 206 INGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +  C     +     A      +   N + +V+L + + + G    + ++ + M +KG+
Sbjct: 694 LGACKSHDNVQLAEWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGL 752


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 218/709 (30%), Positives = 361/709 (50%), Gaps = 79/709 (11%)

Query: 1   MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           +KG+  N  L TA+A    ++           T+++ +   +   K+ ++IH Q+I ++ 
Sbjct: 119 LKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            A+    T +++  +  + ID A  +FD    ++L  +N +I G ++N   +  +   + 
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M     RP+ +T   V  + A + LL +G+ +H   +++G      +   LADMY + G 
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLID 238
              A  +FD   +K    +V+ WN +++G  + G   KA+ +F  M ++ +  + V++++
Sbjct: 299 VETARLIFDGMDQK----TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 239 GF---MRKGDLKK-----------------------------------AGELFEQMPEKG 260
                   GDL++                                   A ++F  +  + 
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            VSW AMI G++QNG   +AL  F +M   G++ + FT+VS + A A++        +H 
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 321 YI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
            I  SC D  +   + TALVDMY+KCG I  A  +F    ++ ++TW AMI G   HG  
Sbjct: 475 LIIRSCLDKNI--FVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
             A+  F KM     EP+   +L++++AC +SG V   L  F SM+ DY +EPS+ H+  
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592

Query: 439 VVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKH 470
           +V+LL R G+  + +   +N                            +  KL +L P  
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDE 652

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLA 528
              +VLL+NIYA+  +W  VA VR  M+++ +KK PG S +E+   VH F +G   H  +
Sbjct: 653 GGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQS 712

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           K I++ LE+++   +  GY+P T  +L    + +E+ L  HSEKLA+AFGL+ T+PGTTI
Sbjct: 713 KRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTI 772

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            + K L +CGDCH+  KY S ++ REI++RD  RFH+FK+G CSC DYW
Sbjct: 773 HVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 203/409 (49%), Gaps = 43/409 (10%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           L+    S K+L QI   +I + L+      T+L+S  S + SI+ A  +F+    K   +
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           ++ +++G A+NS  ++ ++    M    V+P    + ++ K     + L  G+ +H  ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
            +    + F    + +MY +  +   A+K+FD  PE++    ++ WN +I G S+ G+ +
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD----LVSWNTIIAGFSQNGFAK 230

Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
           KA+EL       G  P                                  K V    +L 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G ++ A  +F+ M +K VVSW +M++G+ QNGE EKA+A+F +ML+ G+     
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T++ AL ACA +G LE G  VH ++   + G   ++  +L+ MY+KC  ++ AS +F   
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
             +  ++W AMI G A +GR  +A+  F +M   G +PD    ++++ A
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 337/631 (53%), Gaps = 75/631 (11%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S + LR+ HA++I   L         L+S+ +  + +     +FD    ++LH+++ L  
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSL-- 75

Query: 103 GLAENSHFQSCISHFVFMLRL----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
            LA  SH +S       + R+    ++RP+      ++ + A L  L LG+ LH   V S
Sbjct: 76  -LAAVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVAS 134

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
               D  V+  L DMY + G    A KVFD    KN     ++W  LI+G    G   +A
Sbjct: 135 PYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNS----VMWTALISGYVLNGRSDEA 190

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           +ELF  MP + + +W +LI GF+R G                               E+ 
Sbjct: 191 LELFRSMPGRTLFAWTALISGFVRSG-------------------------------ESV 219

Query: 279 KALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            A+ +F  M   GV  +D F + SA+   A + A   G ++H+      F     +G A+
Sbjct: 220 SAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAV 279

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           VDMY+KC +I +A  VF E   +D+++WT M+ G A HGR E+A   + +M+ +G +P+ 
Sbjct: 280 VDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNE 339

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----- 452
             F+ ++ AC ++G V+     FDSM+ +Y I P ++H+T  ++LLSR G  ++      
Sbjct: 340 VTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHLAEAEELIT 399

Query: 453 --------------------YQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                               Y N++ S      LL+L+PK+PS+YVLLSN+YA  G+W  
Sbjct: 400 TMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKYPSTYVLLSNVYAVNGKWDS 459

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGY 547
           V  VR LM    I+K+PG+S+IEV      F AG     L +EI   LE++++  R++GY
Sbjct: 460 VDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLREEILGFLEELVSEMRQRGY 519

Query: 548 MPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
           +P T  V+H+++E EKE  L  HSE+LA+AFG++++  G+ I++VK L +C DCH++MK+
Sbjct: 520 VPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSVIRVVKNLRVCNDCHTVMKF 579

Query: 607 ASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            S+I QR+I++RD +RFH+F+ G CSC ++W
Sbjct: 580 ISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 218/626 (34%), Positives = 327/626 (52%), Gaps = 75/626 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    ++  ++N ++ GL +NS F   I  F  M++  +  +  T   V   VA 
Sbjct: 160 ARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAE 219

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L+LG G+ CL +K G    A+V   LA +Y + G+   A  +F +  + +    ++ 
Sbjct: 220 LQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPD----LVS 275

Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFM---------------- 241
           +N +I+G +       +V LF  +     K N +S V LI  F                 
Sbjct: 276 YNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCT 335

Query: 242 -------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                              R  +++ A  LF++  EK + SW AMI+G++QNG  EKA++
Sbjct: 336 KSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAIS 395

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M    VR N  TV S LSACA++GAL  G  VH+ I+   F     + TAL+DMYA
Sbjct: 396 LFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYA 455

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+I  A  +F    EK+ +TW AMI G  +HG   +A+  F +M++S   P G  FL+
Sbjct: 456 KCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLS 515

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------- 455
           +L AC ++G V+     F SM  D+  EP  +H+  +V+LL R G   +           
Sbjct: 516 VLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVE 575

Query: 456 ---------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                ++ +  KL +L P++   YVLLSNIY+A   + + A VR
Sbjct: 576 PGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVR 635

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            +++RR + K PG + IEV   +H F +G   H  A  I++ LE +    RE G+   T 
Sbjct: 636 GVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLEKLTGKMREAGFQTETG 695

Query: 553 WVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
             LH+++EE++E +   HSEKLA+AFGLI + PGT I+I+K L +C DCH+  K+ SKI+
Sbjct: 696 TALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLRVCLDCHNATKFISKIT 755

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +R IV+RD  RFH+FKDG CSC DYW
Sbjct: 756 ERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 124/463 (26%), Positives = 218/463 (47%), Gaps = 48/463 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T    ++LI+  ++  QL Q HAQIIL+ L       T+L    S  K+ID A  +F   
Sbjct: 9   TRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTI 68

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLG 148
              +L ++NVLIR  + N+   S +S +  + + + + P+  TY FV   ++  S L LG
Sbjct: 69  PNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFV---ISGASSLGLG 125

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
             LH   + +G   D FV   +   Y +  +   A KVFD   E++     +LWN +++G
Sbjct: 126 LLLHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERD----TVLWNTMVSG 181

Query: 209 CSKIGYLRKAVELFGMMPKKNVA-----------------------------------SW 233
             K     +A+ +FG M K  +                                    S 
Sbjct: 182 LVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSH 241

Query: 234 VSLIDG----FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
             +I G    + + G+++ A  LF Q+ +  +VS+ AMI+G++ N E E ++ +F ++L 
Sbjct: 242 AYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLV 301

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           +G + N  ++V  +      G L     +H + + +      ++ TAL  +Y++   IE+
Sbjct: 302 SGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIES 361

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A L+F E+ EK L +W AMI G A +G  E+AI  F++M      P+     +IL+AC  
Sbjct: 362 ARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQ 421

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            G + L     D +  + F E ++   T ++++ ++ G  ++ 
Sbjct: 422 LGALSLGKWVHDLINRESF-ESNIFVSTALIDMYAKCGSITEA 463


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 209/658 (31%), Positives = 342/658 (51%), Gaps = 75/658 (11%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAEN 107
           IH  ++ +    +  + T L+   +  K +  A  +F    F  KN  ++  ++ G A+N
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F +M    V  N+ T+P +  + +S+     G  +H  IVKSG   + +V+
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGFGSNVYVQ 303

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY + G  + A  +     E  + + V+ WN L+ G  + G   +A+ LF     
Sbjct: 304 SALVDMYAKCGDLKNAKNML----ETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHG 359

Query: 223 -------------------GMMPKKNVASWV-------------SLIDGFMRKGDLKKAG 250
                              G +  K+V   +             +L+D + + GD+  A 
Sbjct: 360 RNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAY 419

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            +FE+M EK V+SWT+++ G++QN   E++L +F  M   GV  + F V S LSACA++ 
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            LE G +VH     +      ++  +LV MYAKCG ++ A  +F   + KD++TWTA+I 
Sbjct: 480 LLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAIIV 539

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G A +G+   +++++  M+ SGT PD   F+ +L AC ++G V     +F  M   Y I+
Sbjct: 540 GYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIK 599

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNSFTK 462
           P  +H+  +++L  R G+  +  Q                             ++ + T 
Sbjct: 600 PGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAATN 659

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF-- 520
           L +L+P +   YV+LSN+Y+A  +W DVA++R LM+ + I K+PG S++E+N  V+ F  
Sbjct: 660 LFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINSRVNTFIS 719

Query: 521 EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGL 579
           +  GH    EI++K+++I+   +E GY+P   + LH++ KE KE  L  HSEKLA+AFGL
Sbjct: 720 DDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGLAYHSEKLAVAFGL 779

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           +   P   I+I K L +CGDCHS MKY S++  R I+LRD+  FH+F++G CSC DYW
Sbjct: 780 LAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHFREGECSCGDYW 837



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 117/433 (27%), Positives = 187/433 (43%), Gaps = 80/433 (18%)

Query: 47  LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI----- 101
           LR IH        + S   T QL++  S    ++ A  +FD    K+ + +N +I     
Sbjct: 51  LRSIHTTTAAS--YESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVN 108

Query: 102 --RGLAENSHFQSCISHF-------------------VFMLRLSVR-----PNRLTYPFV 135
             R +     F  C                        F L  S+R      ++ T   V
Sbjct: 109 VGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSV 168

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--ETPEK 193
            +  +SL L+  G  +H  +VK+G E + FV   L DMY +      A  +F   E   K
Sbjct: 169 LRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRK 228

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------------- 228
           N     +LW  ++ G ++ G   KAVE F  M  +                         
Sbjct: 229 NH----VLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG 284

Query: 229 --------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                         NV    +L+D + + GDLK A  + E M +  VVSW +++ GF ++
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  E+AL +F  M    ++ +D+T  S L+ C  VG++     VH  I    F     + 
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINPK-SVHGLIIKTGFENYKLVS 402

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            ALVDMYAK G+++ A  VF +  EKD+++WT+++ G A +  +E++++ F  M  +G  
Sbjct: 403 NALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVN 462

Query: 395 PDGTVFLAILTAC 407
           PD  +  +IL+AC
Sbjct: 463 PDQFIVASILSAC 475



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 122/279 (43%), Gaps = 16/279 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H  II         ++  L+   +    +D A ++F+    K++  +  L+ G A+N
Sbjct: 384 KSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQN 443

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
           +  +  +  F  M    V P++     +  + A L+LL  G+ +H   +KSG+ +   V 
Sbjct: 444 NSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVY 503

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
             L  MY + G    A  +F     K+    V+ W  +I G ++ G  R +++ +  M  
Sbjct: 504 NSLVAMYAKCGCLDDADAIFVSMQVKD----VITWTAIIVGYAQNGKGRNSLKFYDAMVS 559

Query: 226 --PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAE 278
              + +  +++ L+      G + +  + F+QM      + G   +  MI+ F ++G+ +
Sbjct: 560 SGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLD 619

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +A  +  QM    V+ +     S LSAC     LE   R
Sbjct: 620 EAKQLLDQM---DVKPDATVWKSLLSACRVHENLELAER 655


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  357 bits (917), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 221/678 (32%), Positives = 351/678 (51%), Gaps = 71/678 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   ++S + S  +    +++HAQ +     +S  +   L++  +    ++ A S+F
Sbjct: 200 NPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVF 259

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    +++  +N L+ GL  N      +  F        +  + TY  V K  A+L  L+
Sbjct: 260 NWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLA 319

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L R LH  ++K G      V   LAD Y + G+   A  +F  T     S +V+ W  +I
Sbjct: 320 LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMT---TGSRNVVSWTAII 376

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS---------------------------------- 232
           +GC + G +  AV LF  M +  V                                    
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPF 436

Query: 233 -WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              +L+  + + G  + A  +F+ + +K VV+W+AM++  +Q G+ E A  +F +M   G
Sbjct: 437 VGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQG 496

Query: 292 VRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           ++ N+FT+ S + ACA   A ++ G + H       +     + +ALV MY++ GNI++A
Sbjct: 497 IKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSA 556

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
            +VF    ++DL++W +MI G A HG   +AI+ F++M  SG + DG  FLA++  C ++
Sbjct: 557 QIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHN 616

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ------------------- 451
           G V     +FDSM  D+ I P+++H+  +V+L SR G+  +                   
Sbjct: 617 GLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRT 676

Query: 452 ---------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                      +  + S  KLL L+P   S+YVLLSNIYAA G+WK+   VR LM  R +
Sbjct: 677 LLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKV 736

Query: 503 KKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+ G S+I++   VH F A    H ++ +I+ KL+ I+   ++ GY P T +VLH+I E
Sbjct: 737 KKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAE 796

Query: 561 EKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           +++EA L  HSE+LALAFGLI T PGT ++IVK L +CGDCH +MK  S I  REI++RD
Sbjct: 797 DQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRD 856

Query: 620 -TRFHYFKDGTCSCRDYW 636
            +RFH+F  G CSC D+W
Sbjct: 857 CSRFHHFNGGACSCGDFW 874



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 174/410 (42%), Gaps = 48/410 (11%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+   + +F+    KN+  +  L+ G A        ++ F  M    + PN  T+  V  
Sbjct: 150 SVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLS 209

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +VAS   L LG+ +H   VK G     FV   L +MY + G    A  VF+    ++   
Sbjct: 210 AVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRD--- 266

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWV---------------- 234
            ++ WN L+ G        +A++LF       G M +   A+ +                
Sbjct: 267 -MVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLH 325

Query: 235 ----------------SLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
                           +L D + + G+L  A  +F      + VVSWTA+I+G  QNG+ 
Sbjct: 326 SCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDI 385

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
             A+ +F +M +  V  N+FT  + L A   +       ++H  +   ++     +GTAL
Sbjct: 386 PLAVVLFSRMREDRVMPNEFTYSAMLKASLSI----LPPQIHAQVIKTNYQHIPFVGTAL 441

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           +  Y+K G+ E A  +F   ++KD++ W+AM+   A  G  E A   F KM   G +P+ 
Sbjct: 442 LASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNE 501

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
               +++ AC            F ++   Y    ++   + +V++ SR G
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKG 551



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 108/192 (56%), Gaps = 4/192 (2%)

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           +  V++  SL+D +M+ G + +  E+FE MP+K VV+WT+++ G +      + +A+FF+
Sbjct: 132 RGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFR 191

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKC 344
           M   G+  N FT  S LSA A  GAL+ G RVH       FG + +  +  +L++MYAKC
Sbjct: 192 MRAEGIWPNPFTFASVLSAVASQGALDLGQRVH--AQSVKFGCRSSVFVCNSLMNMYAKC 249

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +E A  VF   + +D+++W  ++ GL ++    +A+Q F +   +  +   + +  ++
Sbjct: 250 GLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVI 309

Query: 405 TACWYSGQVKLA 416
             C    Q+ LA
Sbjct: 310 KLCANLKQLALA 321



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 28/209 (13%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP+     + I +    S    Q RQ HA  I +    +  +++ L+S  S   +ID A 
Sbjct: 498 KPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQ 557

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F+  T ++L  +N +I G A++ +    I  F  M    ++ + +T+         L+
Sbjct: 558 IVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTF---------LA 608

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH-----------LADMYVQLGKTRGAFKVFDETPE 192
           ++ +G   + L+V+    +D+ VR H           + D+Y + GK      +  + P 
Sbjct: 609 VI-MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMP- 666

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVEL 221
                  ++W  L+  C     + K VEL
Sbjct: 667 --FPAGAMVWRTLLGACR----VHKNVEL 689


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 218/709 (30%), Positives = 361/709 (50%), Gaps = 79/709 (11%)

Query: 1   MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           +KG+  N  L TA+A    ++           T+++ +   +   K+ ++IH Q+I ++ 
Sbjct: 119 LKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSF 178

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            A+    T +++  +  + ID A  +FD    ++L  +N +I G ++N   +  +   + 
Sbjct: 179 AANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLR 238

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M     RP+ +T   V  + A + LL +G+ +H   +++G      +   LADMY + G 
Sbjct: 239 MQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGS 298

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLID 238
              A  +FD   +K    +V+ WN +++G  + G   KA+ +F  M ++ +  + V++++
Sbjct: 299 VETARLIFDGMDQK----TVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIME 354

Query: 239 GF---MRKGDLKK-----------------------------------AGELFEQMPEKG 260
                   GDL++                                   A ++F  +  + 
Sbjct: 355 ALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRT 414

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            VSW AMI G++QNG   +AL  F +M   G++ + FT+VS + A A++        +H 
Sbjct: 415 HVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 321 YI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
            I  SC D  +   + TALVDMY+KCG I  A  +F    ++ ++TW AMI G   HG  
Sbjct: 475 LIIRSCLDKNI--FVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
             A+  F KM     EP+   +L++++AC +SG V   L  F SM+ DY +EPS+ H+  
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGA 592

Query: 439 VVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKH 470
           +V+LL R G+  + +   +N                            +  KL +L P  
Sbjct: 593 MVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDE 652

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLA 528
              +VLL+NIYA+  +W  VA VR  M+++ +KK PG S +E+   VH F +G   H  +
Sbjct: 653 GGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQS 712

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           K I++ LE+++   +  GY+P T  +L    + +E+ L  HSEKLA+AFGL+ T+PGTTI
Sbjct: 713 KRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTI 772

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            + K L +CGDCH+  KY S ++ REI++RD  RFH+FK+G CSC DYW
Sbjct: 773 HVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 203/409 (49%), Gaps = 43/409 (10%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           L+    S K+L QI   +I + L+      T+L+S  S + SI+ A  +F+    K   +
Sbjct: 55  LLELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDAL 114

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           ++ +++G A+NS  ++ ++    M    V+P    + ++ K     + L  G+ +H  ++
Sbjct: 115 YHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLI 174

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
            +    + F    + +MY +  +   A+K+FD  PE++    ++ WN +I G S+ G+ +
Sbjct: 175 TNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERD----LVSWNTIIAGFSQNGFAK 230

Query: 217 KAVELF------GMMPK---------------------------------KNVASWVSLI 237
           KA+EL       G  P                                  K V    +L 
Sbjct: 231 KALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALA 290

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G ++ A  +F+ M +K VVSW +M++G+ QNGE EKA+A+F +ML+ G+     
Sbjct: 291 DMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGV 350

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T++ AL ACA +G LE G  VH ++   + G   ++  +L+ MY+KC  ++ AS +F   
Sbjct: 351 TIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNL 410

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
             +  ++W AMI G A +GR  +A+  F +M   G +PD    ++++ A
Sbjct: 411 NGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 341/672 (50%), Gaps = 46/672 (6%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFAS 62
           H F +L   ++     KS   P N +    ++  ++      K L+ +H+++   +   +
Sbjct: 9   HQFPKLQALVSSIR--KSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHEN 66

Query: 63  SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
             +  +L+ + +       A ++FD    +N+  +NV+IR    N  +   +  F  M+ 
Sbjct: 67  PSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVS 126

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
               P+  TYP V K+ +    L +G  LH  + K G++ + FV   L  +Y + G    
Sbjct: 127 GGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPE 186

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWVSLID 238
           A  V DE     +S+ V+ WN ++ G ++      A+    E+ G+  K +  +  SL+ 
Sbjct: 187 ARCVLDEM----QSKDVVSWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLP 242

Query: 239 GFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
                   ++    E+F  + +K +VSW  MI+ + +N    K++ ++ QM    V  + 
Sbjct: 243 AVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDA 302

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T  S L AC  + AL  G R+H Y+          +  +L+DMYA+CG +E A  VF  
Sbjct: 303 ITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDR 362

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
            K +D+ +WT++I    + G+   A+  F +M  SG  PD   F+AIL+AC +SG +   
Sbjct: 363 MKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEG 422

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------------ 458
             +F  M  DY I P ++H   +V+LL R G+  + Y   +                   
Sbjct: 423 KFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCR 482

Query: 459 ----------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                     +  KLLQL P+    YVLLSNIYA  GRW +V  +R+LM+RR I+K PG 
Sbjct: 483 VYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGI 542

Query: 509 SYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA- 565
           S +E+N  VH F AG   H  +KEI+ +L  ++   +E GY+P T+  LH+++EE +E  
Sbjct: 543 SNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECH 602

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHY 624
           L  HSEKLA+ F ++ T   + I+I K L +CGDCH   K  SKI QREIV+RDT RFH+
Sbjct: 603 LAVHSEKLAIVFAILNTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHH 661

Query: 625 FKDGTCSCRDYW 636
           FKDG CSC DYW
Sbjct: 662 FKDGICSCGDYW 673


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 212/630 (33%), Positives = 327/630 (51%), Gaps = 43/630 (6%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K L+++H  I   N   +  +  +L+ S +          +FD  + +N+  +NV+IR  
Sbjct: 35  KTLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSY 94

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             N  +   +  F  M+    RP+  TYP V K+ +    L  G  +H  ++K G++++ 
Sbjct: 95  VNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNL 154

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV   L  MY + G    A +VFDE   K+    V+ WN ++ G +       A+E+   
Sbjct: 155 FVGNGLIAMYGKCGCLFEARRVFDEMIWKD----VVSWNSMVAGYAHNMRFDDALEICRE 210

Query: 225 MP----KKNVASWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           M     K +  +  SL+         ++    ++F  +  K ++SW  MI  + +N    
Sbjct: 211 MEDYGQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPT 270

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ ++ QM    V  +  T  S L AC  + AL  G R+H Y+          +  +L+
Sbjct: 271 QAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLI 330

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMYA+CG ++ A  VF   K +D+ +WT++I    + G+   A+  F +M+ SG  PD  
Sbjct: 331 DMYARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSI 390

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---- 454
            F+AIL+AC +SG +     +F  M  DY I P ++H+  +V+LL R G+  + Y     
Sbjct: 391 AFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQ 450

Query: 455 --------------NSQNSFT----------KLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                         +S   FT           LLQL P+    YVLLSNIYA  GRWK+V
Sbjct: 451 MPIEPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEV 510

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
             +R++M+R+ I+K PG S +E+N  VH F AG   H  +KEI+ +L  ++A  +E GY+
Sbjct: 511 TEIRSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYV 570

Query: 549 PGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P T+  LH+++EE +E  L  HSEKLA+ F L+ T     I+I K L +CGDCH   K  
Sbjct: 571 PETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQE-YQIRITKNLRVCGDCHIAAKLI 629

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           SKI +REI++RDT RFH+FKDG CSC DYW
Sbjct: 630 SKIVEREIIVRDTNRFHHFKDGVCSCGDYW 659


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 218/644 (33%), Positives = 344/644 (53%), Gaps = 52/644 (8%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS---LHKSIDYALSIFDHF----- 89
           +    +  QL+Q+H QI  + L       T+L+++ +     +S+DYA   F+ F     
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           +   L + N LIRG +     +  I  +V ML L V PN  T+PFV      ++    G 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  +VK G+E D F++  L   Y + G      KVF+   E+N    V+ W  LI G 
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERN----VVSWTSLICGY 207

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
           ++    ++AV LF  M  K + +  +L+D +M+ G +  A  LF++  ++ +V +  +++
Sbjct: 208 ARGDRPKEAVSLFFEMLNKVMVN--ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILS 265

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV-----GALEAGVRVHNYISC 324
            +++ G A +ALA+  +ML  G R +  T++SA+SA A++     G +  G  VH YI  
Sbjct: 266 NYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEK 325

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           N       + TALVDM+A+CG+ ++A  VF +  E+D+  WTA I  +A+ G  E A   
Sbjct: 326 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGL 385

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M+  G +PD  +F+ +LTAC + GQV+  L+ F  M  D+ I P ++H+  +V+LL 
Sbjct: 386 FNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHYGCMVDLLG 444

Query: 445 RVGQDSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVL 476
           R G   + +                            + +  +  ++ +L P+    +VL
Sbjct: 445 RAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVL 504

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSK 534
           LSNIYA+ G+W DVARVR  ++ + ++K PG S ++VNG +H F +G   H     I   
Sbjct: 505 LSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALM 564

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           L+++     + G++P    VL ++ E EKE  L  HSEKLA+AFGLI T     I++VK 
Sbjct: 565 LQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKN 624

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +C DCHS  K AS I  REI++RD  RFH+F+ G CSC DYW
Sbjct: 625 LRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/423 (20%), Positives = 171/423 (40%), Gaps = 105/423 (24%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK------TRGAFKVFD 188
           +++S+     L+  + LHC I K+G++        L +   ++         R AF++F 
Sbjct: 28  LNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFK 87

Query: 189 ETPEKNKS------------------ESVLLW---------------NVLINGCSKIGYL 215
           E    + +                  E++LL+                 +++GC+KI   
Sbjct: 88  EDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF 147

Query: 216 RKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
            + +++ G + K  +   V     LI  +   G +    ++FE M E+ VVSWT++I G+
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           ++    ++A+++FF+ML                               N +  N      
Sbjct: 208 ARGDRPKEAVSLFFEML-------------------------------NKVMVN------ 230

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
               ALVDMY KCG I+AA  +F E  +++L+ +  ++   A  G   +A+    +M+  
Sbjct: 231 ----ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 286

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH---------HTVVVNL 442
           G  PD    L+ ++A       +L   F+  +   Y++   ++          +T +V++
Sbjct: 287 GPRPDRVTMLSAISA-----SAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTALVDM 341

Query: 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
            +R G      Q++   F K+ +   +  S++       A EG  +    +   M  + +
Sbjct: 342 FARCGDP----QSAMQVFNKMTE---RDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGV 394

Query: 503 KKD 505
           K D
Sbjct: 395 KPD 397


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 212/590 (35%), Positives = 319/590 (54%), Gaps = 80/590 (13%)

Query: 88  HFTPKNLH--IFNVLIRG----LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           H +  N+   ++N LIR       +N  F   +S ++ M   +V P+  T+PF+ +S+ +
Sbjct: 16  HLSHPNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRMRLHAVLPDLHTFPFLLQSINT 75

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
                 GR LH  I+  G+  D FV+  L +MY   G    A + FDE            
Sbjct: 76  PHR---GRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDE------------ 120

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                                  + + ++ SW ++I    + G +  A +LF+QMPEK V
Sbjct: 121 -----------------------ITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNV 157

Query: 262 VSWTAMINGFSQNGEAEKALAMF--FQMLDAG-VRANDFTVVSALSACAKVGALEAGVRV 318
           +SW+ MI+G+   GE + AL++F   Q L+   +R N+FT+ S LSACA++GAL+ G  V
Sbjct: 158 ISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWV 217

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGR 377
           H YI      +   +GT+L+DMYAKCG+IE A  +F     EKD++ W+AMI   ++HG 
Sbjct: 218 HAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKDVMAWSAMITAFSMHGL 277

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            E+ ++ F +M+  G  P+   F+A+L AC + G V     +F  M  +Y + P ++H+ 
Sbjct: 278 SEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYG 337

Query: 438 VVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPK 469
            +V+L SR G+    +                            +  + + TKLL+L P 
Sbjct: 338 CMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPA 397

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
           + S+YVLLSN+YA  GRW++V  +R LM+ R IKK PG S +EV+G +  F AG   H  
Sbjct: 398 NSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPE 457

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
              ++  L++IM    + GY   T  VL ++ EE KE AL  HSEKLA+A+  ++T+PGT
Sbjct: 458 LLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEFALSLHSEKLAIAYCFLRTSPGT 517

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           TI+IVK L IC DCH  +K  SK   REI++RD  RFH+FK+G CSC+DY
Sbjct: 518 TIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFHHFKNGLCSCKDY 567



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 153/365 (41%), Gaps = 76/365 (20%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS------------------------- 71
           L+ S N+  + RQ+HAQI+L  L     + T LI+                         
Sbjct: 69  LLQSINTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPS 128

Query: 72  -SASLHKS-----IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS- 124
            +A +H +     I  A  +FD    KN+  ++ +I G      +++ +S F  +  L  
Sbjct: 129 WNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEG 188

Query: 125 --VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
             +RPN  T   V  + A L  L  G+ +H  I K+G++ D  +   L DMY + G    
Sbjct: 189 SQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIER 248

Query: 183 AFKVFDET-PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLI 237
           A  +FD   PEK+    V+ W+ +I   S  G   + +ELF  M     + N  ++V+++
Sbjct: 249 AKCIFDNLGPEKD----VMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL 304

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGV 292
              +  G + +  E F++M  +  VS     +  M++ +S+ G  E A            
Sbjct: 305 CACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDA------------ 352

Query: 293 RANDFTVVSALSACAKV---GALEAGVRVHNYISCNDFG------LKGAIGTALV---DM 340
               + VV ++     V   GAL  G R+H  +   +        L  A  +A V   ++
Sbjct: 353 ----WNVVKSMPMEPDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNV 408

Query: 341 YAKCG 345
           YAK G
Sbjct: 409 YAKLG 413



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 60/288 (20%), Positives = 117/288 (40%), Gaps = 22/288 (7%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
            ++ S    N  T + ++S      + +  + +HA I    +     + T LI   +   
Sbjct: 185 TLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCG 244

Query: 78  SIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           SI+ A  IFD+  P K++  ++ +I   + +   + C+  F  M+   VRPN +T+  V 
Sbjct: 245 SIERAKCIFDNLGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVL 304

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVFDETPE 192
            +     L+S G      ++    EY     +     + D+Y + G+   A+ V    P 
Sbjct: 305 CACVHGGLVSEGNEYFKRMMN---EYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPM 361

Query: 193 KNKSESVLLWNVLINGCSKIGYLRK---AVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
           +     V++W  L+NG    G +     A+     +   N +++V L + + + G  ++ 
Sbjct: 362 E---PDVMIWGALLNGARIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREV 418

Query: 250 GELFEQMPEKGV--------VSWTAMINGFSQNGEAEKALAMFFQMLD 289
             L + M  +G+        V    +I  F     +   L   + MLD
Sbjct: 419 RHLRDLMEVRGIKKLPGCSLVEVDGVIREFFAGDNSHPELLNLYVMLD 466


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  357 bits (916), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 212/631 (33%), Positives = 327/631 (51%), Gaps = 84/631 (13%)

Query: 86   FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
            + +    N+H +N +I  LA        +  F  + +L + P R ++P   KS ++L  L
Sbjct: 1972 YKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCDL 2031

Query: 146  SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
              GR  H      G E D FV   L DMY + G+ + A  +FDE P +N    V+ W  +
Sbjct: 2032 VSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN----VVSWTSM 2087

Query: 206  ING-------------------------------------------CSKIGYLRKAVELF 222
            I G                                           CS++        + 
Sbjct: 2088 ITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 223  GMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
            G + KK     +    +L+D + + G    + ++F+ M EK  +SW +MI  ++Q+G + 
Sbjct: 2148 GFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSG 2207

Query: 279  KALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +AL +F  M+   GVR N  T+ + L ACA  GAL AG  +H+ +   D      +GT++
Sbjct: 2208 EALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSI 2267

Query: 338  VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
            +DMY KCG +E A   F   KEK++ +WTAM+ G  +HGR ++A+  F KM+ +G +P+ 
Sbjct: 2268 IDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNY 2327

Query: 398  TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--- 454
              F+++L AC ++G V+   ++F++M+  Y IEP ++H+  +V+L  R G  ++ Y    
Sbjct: 2328 ITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387

Query: 455  --NSQNSFT-----------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                +  F                        KL +L P +   YVLLSN+YA  GRW D
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGRWAD 2447

Query: 490  VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGY 547
            V R+R LM+ R + K PG+S +E+ G VH F  G   H   + I+  LE +    ++ GY
Sbjct: 2448 VERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQKIGY 2507

Query: 548  MPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
            +P    VLH++ +EEKE  L  HSEKLA+AFG++ + PGTTI I+K L +CGDCH+++K 
Sbjct: 2508 VPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTVIKL 2567

Query: 607  ASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             SK+  R+ V+RD+ RFH+FKDG CSC DYW
Sbjct: 2568 ISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 134/448 (29%), Positives = 221/448 (49%), Gaps = 37/448 (8%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           T  + P+ NI  +  P  NI     + L+ +  + K LRQIHA+II   L     +T +L
Sbjct: 8   THDVFPSKNIPLT--PRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKL 65

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           I   S H  I YA+ +F          +N++IR    N   +  +  +  M+   +  ++
Sbjct: 66  IHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADK 125

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T+PFV K+  +   + LG+ +H  ++K G   D FV+ +L D Y + G TR A KVF  
Sbjct: 126 FTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF-- 183

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
             EK +  +V+ W  +I+G    G L++A  +F  +P KNV SW ++I+G++R       
Sbjct: 184 --EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIR------- 234

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
                                   N + E+AL +F +M    +  N++T+VS + AC ++
Sbjct: 235 ------------------------NQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G L  G  +H+Y   N   +   +GTAL+DMY+KCG+I+ A  VF     K L TW +MI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
             L +HG  ++A+  F +M     +PD   F+ +L AC +   VK    +F  M   Y I
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGI 390

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457
            P  +H+  +  L +R     + +++++
Sbjct: 391 APIPEHYECMTELYARSNNLDEAFKSTK 418



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 178/411 (43%), Gaps = 62/411 (15%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            R  H Q  +        +++ LI   S    +  A ++FD    +N+  +  +I G  +N
Sbjct: 2035 RMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQN 2094

Query: 108  SHFQSCISHFV-FMLRLSVRPNRLTYPFVSKSVASLSLLS---------LGRGLHCLIVK 157
                + +  F  F+   +   +    P    SV  +S+LS         +  G+H  +VK
Sbjct: 2095 EQADNALLLFKDFLEEETEVEDGNNVPL--DSVVMVSVLSACSRVSGKGITEGVHGFVVK 2152

Query: 158  SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
             G +    V   L D Y + G+   + KVFD   EK+     + WN +I   ++ G   +
Sbjct: 2153 KGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD----ISWNSMIAVYAQSGLSGE 2208

Query: 218  AVELFGMMPKK----------------------------------------NVASWVSLI 237
            A+E+F  M +                                         NV    S+I
Sbjct: 2209 ALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSII 2268

Query: 238  DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            D + + G ++ A + F++M EK V SWTAM+ G+  +G A++AL +F++M+ AGV+ N  
Sbjct: 2269 DMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYI 2328

Query: 298  TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVF 354
            T VS L+AC+  G +E G    N +  + + ++  I     +VD++ + G + EA +L+ 
Sbjct: 2329 TFVSVLAACSHAGLVEEGWHWFNAMK-HKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIK 2387

Query: 355  GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
                + D + W +++    IH   +      +K+     +PD   +  +L+
Sbjct: 2388 RMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLF--ELDPDNCGYYVLLS 2436


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  357 bits (915), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 217/660 (32%), Positives = 346/660 (52%), Gaps = 76/660 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H  I+       + +   L++    +  +D A  +FD  T +++  +N +I G   N 
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNG 275

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +S FV ML   +  +  T   V    A   L+SLGR +HC  VK+    +     
Sbjct: 276 LAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCN 335

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
            L DMY + G    A  VF E   +    SV+ +  +I G ++ G   +AV+LF      
Sbjct: 336 TLLDMYSKCGDLDSAKVVFREMSGR----SVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 223 GMMPK--------------------KNVASWV-------------SLIDGFMRKGDLKKA 249
           G+ P                     K V  W+             +L+D + + G +++A
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF-FQMLDAGVRANDFTVVSALSACAK 308
             +F +M  K ++SW  +I G+S+N  A +AL++F   +++     ++ TV   L ACA 
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACAS 511

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + A + G  +H YI  N +     +  +LVDMYAKCG +  A L+F +   KDL++WT M
Sbjct: 512 LSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVM 571

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G  +HG  ++AI  F +M  +G EPD   F+++L AC +SG V     FF+ MR +  
Sbjct: 572 IAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECK 631

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS----------------------------F 460
           IEP+V+H+  +V++L+R G  S+ Y+  +N                              
Sbjct: 632 IEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVA 691

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            K+ +L+P++   YVL++NIYA   +W++V R+R  + +R ++K+PG S+IE+ G V+ F
Sbjct: 692 EKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIF 751

Query: 521 EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAF 577
            AG   +   ++I + L  + A   E+GY P T++ L + +E EKEEAL  HSEKLA+A 
Sbjct: 752 VAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMAL 811

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           G+I +  G  I++ K L +CGDCH + K+ SK+++REIVLRD+ RFH FKDG CSCR +W
Sbjct: 812 GIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 215/466 (46%), Gaps = 61/466 (13%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T   ++ L   S S K  +++   I  +     S + ++L    +    +  A  +FD  
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             +    +N+L+  LA++  F   I  F  M+   V  +  T+  VSKS +SL  ++ G 
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGE 215

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            LH  I+KSG      V   L   Y++  +   A KVFDE  E++    V+ WN +ING 
Sbjct: 216 QLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERD----VISWNSIINGY 271

Query: 210 SKIGYLRKAVELFGMM----PKKNVASWVS------------------------------ 235
              G   K + +F  M     + ++A+ VS                              
Sbjct: 272 VSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSRED 331

Query: 236 -----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                L+D + + GDL  A  +F +M  + VVS+T+MI G+++ G A +A+ +F +M + 
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G+  + +TV + L+ CA+   L+ G RVH +I  ND G    +  AL+DMYAKCG++  A
Sbjct: 392 GISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREA 451

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
            LVF E + KD+++W  +I G + +    +A+  F  ++      PD      +L AC  
Sbjct: 452 ELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPAC-- 509

Query: 410 SGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVG 447
                 +L+ FD         MR  YF +  V +   +V++ ++ G
Sbjct: 510 -----ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCG 548



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/380 (27%), Positives = 173/380 (45%), Gaps = 51/380 (13%)

Query: 69  LISSASLHKSIDYALSI--FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           + + ASL    D A SI  FD    +++   N  +R   E+ + ++ +       +  + 
Sbjct: 38  IFNRASLRTVSDRADSITTFD----RSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDID 93

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P  L    V +  A    L  G+ +   I  +G   D+ +   LA MY   G  + A +V
Sbjct: 94  PRTLCS--VLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRV 151

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------SWVS----- 235
           FD+     K E  L WN+L+N  +K G    ++ LF  M    V       S VS     
Sbjct: 152 FDQV----KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSS 207

Query: 236 ----------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
                                       L+  +++   +  A ++F++M E+ V+SW ++
Sbjct: 208 LRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSI 267

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           ING+  NG AEK L++F QML +G+  +  T+VS  + CA    +  G  VH +     F
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACF 327

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
             +      L+DMY+KCG++++A +VF E   + ++++T+MI G A  G   +A++ F++
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 388 MMYSGTEPDGTVFLAILTAC 407
           M   G  PD     A+L  C
Sbjct: 388 MEEEGISPDVYTVTAVLNCC 407



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 133/305 (43%), Gaps = 31/305 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T T +++    +    + +++H  I  +++     ++  L+   +   S+  A  +F   
Sbjct: 399 TVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEM 458

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFML---RLSVRPNRLTYPFVSKSVASLSLLS 146
             K++  +N +I G ++N +    +S F  +L   R S  P+  T   V  + ASLS   
Sbjct: 459 RVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFS--PDERTVACVLPACASLSAFD 516

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  I+++G   D  V   L DMY + G    A  +FD+   K+    ++ W V+I
Sbjct: 517 KGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKD----LVSWTVMI 572

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP----- 257
            G    G+ ++A+ LF  M +  +     S+VSL+      G + +    F  M      
Sbjct: 573 AGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKI 632

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           E  V  +  +++  ++ G   KA    ++ ++      D T+          GAL  G R
Sbjct: 633 EPTVEHYACIVDMLARTGNLSKA----YRFIENMPIPPDATI---------WGALLCGCR 679

Query: 318 VHNYI 322
           +H+ +
Sbjct: 680 IHHDV 684


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 208/652 (31%), Positives = 337/652 (51%), Gaps = 108/652 (16%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S+  P   ++   +   +   N  K   Q+HA ++L  L  ++ + +++++  +    ID
Sbjct: 63  SAPGPPPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDID 122

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            ++S+F+               G+ +                        T+PFV KS  
Sbjct: 123 SSVSVFN---------------GIGD----------------------YFTFPFVLKSSV 145

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L  + +G+ +H LI++ G+++D +V   L  +Y + G+   A KVFD            
Sbjct: 146 ELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDN----------- 194

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
                                   M  ++V+SW +L+ G+ + G +  A  +FE+MP + 
Sbjct: 195 ------------------------MTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRN 230

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRV 318
           +VSWT MI+G+SQ+G A++AL++F +M+  D+GVR N  T++S L ACA++  LE G ++
Sbjct: 231 IVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQI 290

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHG 376
           H            ++  AL  MYAKCG++  A   F +    EK+L+ W  MI   A +G
Sbjct: 291 HELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYG 350

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
              QA+  F++M+ +G +PD   F  +L+ C +SG V + L +F+ M   Y I P V+H+
Sbjct: 351 HGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHY 410

Query: 437 TVVVNLLSRVGQDSQG----------------------------YQNSQNSFTKLLQLKP 468
             V +LL R G+ ++                              + ++ +  KL  L+P
Sbjct: 411 ACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEP 470

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHK 526
           ++  +YVLLSN+YA  GRW++V ++R +++ +  KK PG S+IE+NG  H F  G   H 
Sbjct: 471 ENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHP 530

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPG 585
             KEI+  LE +    +  GY P T +VLH+I +EEKE  L  HSEKLA+AFG++ T   
Sbjct: 531 QGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAE 590

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T +++ K L ICGDCH+ M + S+I  RE+++RD  RFH+FK G CSC DYW
Sbjct: 591 TVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 219/635 (34%), Positives = 337/635 (53%), Gaps = 89/635 (14%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSK 137
           +D+A  +FD     +  ++N L+ GL+ +   +S    F  M+   SVRP+  T   V  
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGSEAVES----FARMVCDGSVRPDATTLASVLP 220

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--ETPEKNK 195
           + A ++ +++GR +H    K G+     V   L  +Y + G    A  +FD  E P+   
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPD--- 277

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLID----------- 238
              ++ +N LI+G S  G +  +V LF      G+ P  N ++ V+LI            
Sbjct: 278 ---LVAYNALISGYSVNGMVGSSVNLFTELMTLGLWP--NSSTLVALIPVHSPFGHDLLA 332

Query: 239 ----GFM--------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
               GF+                    R  D++ A + F+ MPEK + SW AMI+G++QN
Sbjct: 333 QCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGYAQN 392

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  E A+A+F QM+   VR N  T+ S LSACA++GAL  G  +H  I+  D      + 
Sbjct: 393 GLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPNVYVM 452

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TAL+DMYAKCG+I  A  +F     K++++W AMI G  +HG+  +A++ +K M+ +   
Sbjct: 453 TALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYKDMLDAHLL 512

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P    FL++L AC + G V+     F SM  DY I P ++H T +V+LL R GQ  + ++
Sbjct: 513 PTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFE 572

Query: 455 -----------------------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
                                         ++ +  KL +L P++   YVLLSN++ ++ 
Sbjct: 573 LISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENSGYYVLLSNLHTSKK 632

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR 543
           ++ + A VR   + R + K PG++ IE+    H F AG   H  ++ I+S LE + A   
Sbjct: 633 QYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEAIYSYLEKLTAKMI 692

Query: 544 EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
           E GY P TE  L+++ +EEKE  +  HSEKLA+AFGL+ T PGT I+I+K L +C DCH+
Sbjct: 693 EAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHN 752

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             K+ SK++QR IV+RD +RFH+F+DG CSC DYW
Sbjct: 753 ATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 113/467 (24%), Positives = 200/467 (42%), Gaps = 69/467 (14%)

Query: 35  ISLIHSSNSTKQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           + L+  S++ + L QI A  +   H     +  T+ L+  ASL     + L +F  F   
Sbjct: 22  LRLVALSSTLRHLDQILAVSLASGHYPLDPAPATSLLLRYASLRAPTGHLLRLFRGFPRP 81

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-------SLL 145
           +  + N L+R L       S     +F       P+  ++ F + S+A+L       +  
Sbjct: 82  DRFLRNALLRSL------PSLRPRLLFPC-----PDSFSFAFAATSLAALCSRGGGAASS 130

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S  R LH L V +G   D FV   LA +Y  L +   A KVFD  P    S   +LWN L
Sbjct: 131 SAARALHALAVAAGYAADTFVASALAKLYFVLSRVDHARKVFDTVP----SPDTVLWNTL 186

Query: 206 INGCSKIGYLRKAVELFGMM-------PKKNVASWV------------------------ 234
           + G S      +AVE F  M       P     + V                        
Sbjct: 187 LAGLSG----SEAVESFARMVCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCG 242

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                     LI  + + GD++ A  LF+ M +  +V++ A+I+G+S NG    ++ +F 
Sbjct: 243 LAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFT 302

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +++  G+  N  T+V+ +   +  G       +H ++  + F     + TA+  ++ +  
Sbjct: 303 ELMTLGLWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLN 362

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           ++E+A   F    EK + +W AMI G A +G  E A+  F++M+     P+     + L+
Sbjct: 363 DMESARKAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLS 422

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
           AC   G + L   +   +  +  +EP+V   T ++++ ++ G  S+ 
Sbjct: 423 ACAQLGALSLG-KWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEA 468



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 127/265 (47%), Gaps = 14/265 (5%)

Query: 38  IHSSNSTKQLRQ-IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           +HS      L Q +H  ++     A+S ++T + +       ++ A   FD    K +  
Sbjct: 322 VHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMES 381

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N +I G A+N   +  ++ F  M++L+VRPN +T      + A L  LSLG+ LH +I 
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           +  +E + +V   L DMY + G    A ++F+    KN    V+ WN +I G    G   
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKN----VVSWNAMIAGYGLHGQGA 497

Query: 217 KAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPE-----KGVVSWTAM 267
           +A++L+  M   ++    A+++S++      G +++  ++F  M +      G+   T M
Sbjct: 498 EALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCM 557

Query: 268 INGFSQNGEAEKALAMFFQMLDAGV 292
           ++   + G+ ++A  +  +   + V
Sbjct: 558 VDLLGRAGQLKEAFELISEFPKSAV 582


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  356 bits (914), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 212/665 (31%), Positives = 341/665 (51%), Gaps = 70/665 (10%)

Query: 5   VFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSN-STKQLRQIHAQIILHNLFASS 63
           + + + T IA   N  SS   SN      IISL+H +  + K ++ IH   I        
Sbjct: 2   IISPVPTIIANLPNPHSSSHDSN--LRRVIISLLHKNRKNPKHVQSIHCHAIKTRTSQDP 59

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
            +  +L+        ID+A+ +F      N++++  LI G      +   I+ F  M+R 
Sbjct: 60  FVAFELLRVYCKVNYIDHAIKLFRCTQNPNVYLYTSLIDGFVSFGSYTDAINLFCQMVRK 119

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            V  +      + K+      L  G+ +H L++KSG+  D  + + L ++Y + G    A
Sbjct: 120 HVLADNYAVTAMLKACVLQRALGSGKEVHGLVLKSGLGLDRSIALKLVELYGKCGVLEDA 179

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
            K+FD  PE++    V+   V+I  C   G + +A+E+F  M  ++   W  +IDG +R 
Sbjct: 180 RKMFDGMPERD----VVACTVMIGSCFDCGMVEEAIEVFNEMGTRDTVCWTMVIDGLVRN 235

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G+  +  E+F +M  K                               GV  N+ T V  L
Sbjct: 236 GEFNRGLEVFREMQVK-------------------------------GVEPNEVTFVCVL 264

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SACA++GALE G  +H Y+      +   +  AL++MY++CG+I+ A  +F   + KD+ 
Sbjct: 265 SACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVS 324

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           T+ +MI GLA+HG+  +A++ F +M+     P+G  F+ +L AC + G V L    F+SM
Sbjct: 325 TYNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESM 384

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQ--------GYQNSQNSFTKLLQLKPKHPS--- 472
              + IEP V+H+  +V++L RVG+  +        G +        LL     H +   
Sbjct: 385 EMIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGM 444

Query: 473 -----------------SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
                            S+++LSN YA+ GRW   A VR  M++  I K+PG S IEVN 
Sbjct: 445 GEKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNN 504

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEK 572
            +H F +G   H   K I+ KLE++    + +GY+P TE  LH+I +E++E AL  HSE+
Sbjct: 505 AIHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSER 564

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+ +GL+ T   TT+++ K L IC DCH+++K  +KI++R+IV+RD  RFH+F++G CS
Sbjct: 565 LAICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECS 624

Query: 632 CRDYW 636
           C+DYW
Sbjct: 625 CKDYW 629


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 216/681 (31%), Positives = 345/681 (50%), Gaps = 75/681 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +  T   I+S   S       R+IH +++   L   + +   LIS  +   S+  A  +F
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVF 187

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    ++   +  L    AE+ + +  +  +  ML+  VRP+R+TY  V  +  SL+ L 
Sbjct: 188 DAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALE 247

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  IV+S    D  V   L  MY++ G  + A +VF+    ++    V+ WN +I
Sbjct: 248 KGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRD----VIAWNTMI 303

Query: 207 NG-----------------------------------CSKIGYLRKAVELFGMMPKKNVA 231
            G                                   C++ G L +  E+     K  + 
Sbjct: 304 RGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLV 363

Query: 232 SWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           S V    +LI+ + + G +K A ++F++MP++ VVSWT ++  ++   +  ++   F QM
Sbjct: 364 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM 423

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           L  GV+AN  T +  L AC+   AL+ G  +H  +         A+  AL+ MY KCG++
Sbjct: 424 LQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSV 483

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E A  VF     +D++TW  +I GL  +GR  +A+Q ++ M   G  P+   F+ +L+AC
Sbjct: 484 EDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSAC 543

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------------- 452
                V+     F  M  DY I P+ KH+  +V++L+R G   +                
Sbjct: 544 RVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAM 603

Query: 453 -------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                         +  + +    L+L+P++   YV LS IYAA G W+DVA++R  M+ 
Sbjct: 604 WGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKE 663

Query: 500 RSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           R +KK+PG S+IE+ G VH F A    H   +EI+++LE +    +  GY+P T +V+H+
Sbjct: 664 RGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHD 723

Query: 558 IKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           + +E KE A+  HSEKLA+A+GLI T PGT I+I K L +C DCH+  K+ SKI++REI+
Sbjct: 724 LDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREII 783

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
            RD  RFH+FK+G CSC DYW
Sbjct: 784 ARDAHRFHHFKNGECSCGDYW 804



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 203/436 (46%), Gaps = 46/436 (10%)

Query: 14  APTTNIKSSHKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLI 70
           AP   ++  H+    +     + L+ S    K L   +Q+H  I+   +  +  IT  L+
Sbjct: 11  APADVLQYLHRKGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLL 70

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
              +   S++ A  +FD F+ K++  +NV+I G A     Q   + F  M +  + P++ 
Sbjct: 71  KLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKF 130

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+  +  + +S ++L+ GR +H  ++++G+  D  V   L  MY + G  R A +VFD  
Sbjct: 131 TFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAM 190

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--------------ASWVSL 236
             +++    + W  L    ++ GY  ++++ +  M ++ V               S  +L
Sbjct: 191 ASRDE----VSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAAL 246

Query: 237 IDG-------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
             G                         +M+ G  K A E+FE +  + V++W  MI GF
Sbjct: 247 EKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGF 306

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
             +G+ E+A   F +ML+ GV  +  T  + LSACA+ G L  G  +H   + +      
Sbjct: 307 VDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDV 366

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
             G AL++MY+K G+++ A  VF    ++D+++WT ++   A   +  ++   FK+M+  
Sbjct: 367 RFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQ 426

Query: 392 GTEPDGTVFLAILTAC 407
           G + +   ++ +L AC
Sbjct: 427 GVKANKITYMCVLKAC 442



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 166/369 (44%), Gaps = 46/369 (12%)

Query: 127 PNRLTYPFVS--KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           P   +Y +V   +S      L++G+ +H  I++ GV+ + ++   L  +Y   G    A 
Sbjct: 24  PQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEAR 83

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN--------------- 229
           ++FD    K  ++SV+ WNV+I+G +  G  ++A  LF +M ++                
Sbjct: 84  QLFD----KFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSAC 139

Query: 230 ----VASW--------------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
               V +W                     +LI  + + G ++ A  +F+ M  +  VSWT
Sbjct: 140 SSPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWT 199

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            +   ++++G  E++L  +  ML   VR +  T ++ LSAC  + ALE G ++H +I  +
Sbjct: 200 TLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVES 259

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           ++     + TAL  MY KCG  + A  VF     +D++ W  MI G    G+ E+A   F
Sbjct: 260 EYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTF 319

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M+  G  PD   +  +L+AC   G +            D  +   V+    ++N+ S+
Sbjct: 320 HRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVS-DVRFGNALINMYSK 378

Query: 446 VGQDSQGYQ 454
            G      Q
Sbjct: 379 AGSMKDARQ 387



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 104/242 (42%), Gaps = 11/242 (4%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N IT   ++    +  + K  ++IHA+++   L A   +T  L+S      S++ A+ +
Sbjct: 430 ANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRV 489

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+  + +++  +N LI GL +N      +  +  M    +RPN  T+  V  +    +L+
Sbjct: 490 FEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLV 549

Query: 146 SLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             GR     + K  G+         + D+  + G  R A  V    P K    S  +W  
Sbjct: 550 EEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLK---PSAAMWGA 606

Query: 205 LINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
           L+  C      +IG   +A E    +  +N   +VSL   +   G  +   +L + M E+
Sbjct: 607 LLAACRIHCNVEIG--ERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKER 664

Query: 260 GV 261
           GV
Sbjct: 665 GV 666


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 209/604 (34%), Positives = 323/604 (53%), Gaps = 63/604 (10%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           I T LI+    +  +  A  I D  T +    +N +I G   +  F+  ++ F  M  L 
Sbjct: 225 IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           V+ +  TY  V  + A      LG+ +H  I+K+ +  D        D  + +G      
Sbjct: 285 VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDR-------DFLLSVG------ 331

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
                             N LI    K G +  A ++F  MP K++ +W +L+ G++  G
Sbjct: 332 ------------------NTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGYVNAG 373

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            +++A   F QMPEK +++WT MI+G +QNG  E+AL +F QM   G   ND+    A++
Sbjct: 374 RMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFAGAIT 433

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC+ +GALE G ++H  I         ++G A++ MYA+CG +EAA  +F      D ++
Sbjct: 434 ACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVS 493

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W +MI  L  HG   +AI+ +++M+  G  PD   FL +L+AC ++G V+    +F+SM 
Sbjct: 494 WNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEGNRYFNSML 553

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQ------------------- 457
            +Y I P   H+  +++L  R G+        DS  ++                      
Sbjct: 554 ENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLG 613

Query: 458 -NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
             +  KL +L P+H  +YVLLSN+YA+ GRW DVAR R LM+ R +KK+P  S+ EV   
Sbjct: 614 IEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPACSWTEVENK 673

Query: 517 VHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKL 573
           VH F  +   H     I++ LE +    ++ GY+P T++VLH+++ E KE AL  HSEKL
Sbjct: 674 VHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYALSTHSEKL 733

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFGL++   G T+++ K L ICGDCH+ +K+ SK+  REIV+RD  RFH+FK+G CSC
Sbjct: 734 AVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHHFKNGECSC 793

Query: 633 RDYW 636
           R+YW
Sbjct: 794 RNYW 797



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 191/453 (42%), Gaps = 109/453 (24%)

Query: 1   MKGHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF 60
           ++GH+ NRL      +++   + K  + I +  +I+                        
Sbjct: 46  LRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIA------------------------ 81

Query: 61  ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHF 117
                 T LI++ S   ++  A  IF+  TP ++     +N +I G +  +   S I  F
Sbjct: 82  -----RTTLITAYSALGNLKMAREIFNE-TPLDMRDTVFYNAMITGYSHMNDGHSAIELF 135

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLL------SLGRGLHCLIVKSGVEYDAFVRVHLA 171
             M   + +P+  T+     SV S S L        G+ +H  +VK G+E    V   L 
Sbjct: 136 RAMRWANFQPDDFTF----ASVLSASTLIFYDERQCGQ-MHGTVVKFGIEIFPAVLNALL 190

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
            +YV+   +                             S    +  A +LF  MPK+N  
Sbjct: 191 SVYVKCASSPLV--------------------------SSSSLMASARKLFDEMPKRNEF 224

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
            W +LI G++R GDL  A E+ + M E+  ++W AMI+G+  +G  E AL +F +M   G
Sbjct: 225 IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCN------DFGLKGAIGTALVDMYAKCG 345
           V+ ++ T  S +SACA  G    G +VH YI  N      DF L  ++G  L+ +Y K G
Sbjct: 285 VQVDESTYTSVISACADGGFFLLGKQVHAYILKNELNPDRDFLL--SVGNTLITLYWKYG 342

Query: 346 NIEAASLVFGE-------------------------------TKEKDLLTWTAMIWGLAI 374
            ++ A  +F E                                 EK+LLTWT MI GLA 
Sbjct: 343 KVDGARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQ 402

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +G  EQA++ F +M   G EP+   F   +TAC
Sbjct: 403 NGFGEQALKLFNQMKLDGYEPNDYAFAGAITAC 435



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/315 (23%), Positives = 124/315 (39%), Gaps = 88/315 (27%)

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           +LS  SL R +H  ++ SG +    +   L D+Y +      A K+FDE           
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDE----------- 73

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--E 258
                                   +P+ +V +  +LI  +   G+LK A E+F + P   
Sbjct: 74  ------------------------IPQPDVIARTTLITAYSALGNLKMAREIFNETPLDM 109

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA----------CAK 308
           +  V + AMI G+S   +   A+ +F  M  A  + +DFT  S LSA          C +
Sbjct: 110 RDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQPDDFTFASVLSASTLIFYDERQCGQ 169

Query: 309 V--GALEAGVRVHN---------YISC-------------------------NDFGLKGA 332
           +    ++ G+ +           Y+ C                         N+F     
Sbjct: 170 MHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEF----- 224

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           I T L+  Y + G++  A  +     E+  + W AMI G   HG +E A+  F+KM   G
Sbjct: 225 IWTTLITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG 284

Query: 393 TEPDGTVFLAILTAC 407
            + D + + ++++AC
Sbjct: 285 VQVDESTYTSVISAC 299



 Score = 43.1 bits (100), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 33/154 (21%)

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC- 344
            +LD  V AN +     L     + +      VH ++  + F L+G I   L+D+Y K  
Sbjct: 3   NVLDVRVLANRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSS 62

Query: 345 ------------------------------GNIEAASLVFGET--KEKDLLTWTAMIWGL 372
                                         GN++ A  +F ET    +D + + AMI G 
Sbjct: 63  DFVYARKLFDEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGY 122

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +       AI+ F+ M ++  +PD   F ++L+A
Sbjct: 123 SHMNDGHSAIELFRAMRWANFQPDDFTFASVLSA 156


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  356 bits (913), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 227/713 (31%), Positives = 358/713 (50%), Gaps = 109/713 (15%)

Query: 28  NITETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           N T+    +L+ + +S K   Q +Q+HAQI+  +L + S ++T L   ++L+   D +L 
Sbjct: 2   NTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHD-SLL 60

Query: 85  IFDHF-TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           IF+   +P     +  +IR    +  F   +S F+ ML     P+   +P V KS   + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---------------GKTRGAF---- 184
            L  G  +H  I++ G+ +D +    L +MY +                GKT   +    
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKE 180

Query: 185 ----------KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV--------------- 219
                     KVF+  P+++    ++ WN +I+G ++ G    A+               
Sbjct: 181 KESYYLGSLRKVFEMMPKRD----IVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDS 236

Query: 220 -----------ELFGMMPKKNVASWV-------------SLIDGFMRKGDLKKAGELFEQ 255
                      E   ++  K +  +              SLID + +   +  +  +F  
Sbjct: 237 FTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYM 296

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +P+   +SW ++I G  QNG  ++ L  F QML A ++ N  +  S + ACA +  L  G
Sbjct: 297 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 356

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H YI  + F     I +ALVDMYAKCGNI  A  +F + +  D+++WTAMI G A+H
Sbjct: 357 KQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALH 416

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G    AI  FK+M   G +P+   F+A+LTAC ++G V  A  +F+SM  DY I P ++H
Sbjct: 417 GHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEH 476

Query: 436 HTVVVNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLK 467
           +  V +LL RVG+  + Y+                             ++    KL  + 
Sbjct: 477 YAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVD 536

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           P++  +YVLLSNIY+A GRWKD  ++R  M+ + +KK P  S+IE+   VH F AG   H
Sbjct: 537 PQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSH 596

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTP 584
                I+  L+ ++     +GY+  T  VLH+++EE++  L C HSE+LA+ FG+I T  
Sbjct: 597 PYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPA 656

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GTTI++ K L +C DCH+  K+ SKI  REIV+RD +RFH+FKDG CSC D+W
Sbjct: 657 GTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 338/626 (53%), Gaps = 65/626 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ-SCISHFVFMLRLS--- 124
           ++S  + +  +D A  +FD    KN   +N L+    +NS  + +C+   +F  R +   
Sbjct: 158 ILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKLEEACV---LFGSRENWAL 214

Query: 125 VRPNRLTYPFVSK----------------SVASLSLLSLGRGLHCLIVKS------GVEY 162
           V  N L   FV K                 V S + +  G   +  I ++         +
Sbjct: 215 VSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVH 274

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   Y+Q      A ++FD  PE+N+    + WN ++ G  +   +  A ELF
Sbjct: 275 DVFTWTAMVSGYIQNRMVEEARELFDRMPERNE----VSWNAMLAGYVQGERVEMAKELF 330

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
            +MP +NV++W ++I G+ + G + +A  LF++MP++  VSW AMI G+SQ+G + +AL 
Sbjct: 331 DVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALR 390

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F  M   G R N  +  SALS CA V ALE G ++H  +    +     +G AL+ MY 
Sbjct: 391 LFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYC 450

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+IE A+ +F E   KD+++W  MI G + HG  E+A+++F+ M   G +PD    +A
Sbjct: 451 KCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVA 510

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---- 458
           +L+AC ++G V     +F +M  DY + P+ +H+  +V+LL R G   + +   +N    
Sbjct: 511 VLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFE 570

Query: 459 ------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                   +  K+  ++P++   YVLLSN+YA+ GRW DV ++R
Sbjct: 571 PDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLR 630

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             M+ + +KK PG+S+IE+    H F  G   H    EI + LED+    ++ GY+  T 
Sbjct: 631 VRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVSKTS 690

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEKE  +  HSE+LA+A+G+++ + G  I+++K L +C DCH+ +KY +K++
Sbjct: 691 VVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMAKVT 750

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
            R I+LRD  RFH+FKDG+CSC DYW
Sbjct: 751 GRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 168/343 (48%), Gaps = 35/343 (10%)

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
           S V Y+A +  +L +   +L +      +FDE PE++    ++ WNV+I G  +   L K
Sbjct: 89  SSVSYNAMISGYLRNGEFELARM-----LFDEMPERD----LVSWNVMIKGYVRNRNLGK 139

Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
           A ELF  MP+++V SW +++ G+ + G +  A  +F++MPEK  VSW A+++ + QN + 
Sbjct: 140 ARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQNSKL 199

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TA 336
           E+A  +F      G R N + +VS    C   G ++    V      +   ++  +    
Sbjct: 200 EEACVLF------GSREN-WALVSW--NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNT 250

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++  YA+ G I+ A  +F E+   D+ TWTAM+ G   +   E+A + F +M     E +
Sbjct: 251 IITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM----PERN 306

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
              + A+L       +V++A   FD M        +V     ++   ++ G+ S+    +
Sbjct: 307 EVSWNAMLAGYVQGERVEMAKELFDVMPC-----RNVSTWNTMITGYAQCGKISE----A 357

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           +N F K+ +   + P S+  +   Y+  G   +  R+  LM+R
Sbjct: 358 KNLFDKMPK---RDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 156/340 (45%), Gaps = 22/340 (6%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP- 127
           +IS    +   + A  +FD    ++L  +NV+I+G   N +       F  M    V   
Sbjct: 96  MISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSW 155

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N +   +        +     R    +  K+ V ++A     L   YVQ  K   A  +F
Sbjct: 156 NTILSGYAQNGCVDDARRVFDR----MPEKNDVSWNA-----LLSAYVQNSKLEEACVLF 206

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
                  ++ +++ WN L+ G  K   + +A + F  M  ++V SW ++I G+ + G++ 
Sbjct: 207 G----SRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEID 262

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A +LF++ P   V +WTAM++G+ QN   E+A  +F +M +     N+ +  + L+   
Sbjct: 263 EARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPE----RNEVSWNAMLAGYV 318

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +   +E    + + + C +     +    ++  YA+CG I  A  +F +  ++D ++W A
Sbjct: 319 QGERVEMAKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 374

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           MI G +  G   +A++ F  M   G   + + F + L+ C
Sbjct: 375 MIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTC 414



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 113/230 (49%), Gaps = 14/230 (6%)

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           K+    +  WNV I+   + G   +A+ +F  MP+ +  S+ ++I G++R G+ + A  L
Sbjct: 53  KSGDSDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARML 112

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F++MPE+ +VSW  MI G+ +N    KA  +F +M +  V + +    + LS  A+ G +
Sbjct: 113 FDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWN----TILSGYAQNGCV 168

Query: 313 EAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           +   RV + +   ND         AL+  Y +   +E A ++FG  +   L++W  ++ G
Sbjct: 169 DDARRVFDRMPEKNDVSW-----NALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGG 223

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
                +  +A Q+F  M       D   +  I+T    +G++  A   FD
Sbjct: 224 FVKKKKIVEARQFFDSMKVR----DVVSWNTIITGYAQNGEIDEARQLFD 269


>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 623

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 203/588 (34%), Positives = 317/588 (53%), Gaps = 62/588 (10%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           + KP + + E   ISL+ S  ++KQ+ QI AQII +    +  IT +L++  +  K + Y
Sbjct: 29  APKPPHRLLEERFISLLQSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTY 88

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD     N+ ++N + RG A++  ++  +  F  M  + +RPN  T+P V KS   
Sbjct: 89  ARQLFDQIPDPNIALWNSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGK 148

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------- 194
           ++ L  G  +HC ++K G   + FV   L DMY   G    A+K+F E  E+N       
Sbjct: 149 INALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSM 208

Query: 195 --------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
                                   V+LWN++++G  + G + +A +LF  MP ++V  W 
Sbjct: 209 INGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNRDVMFWN 268

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVR 293
           +++ G+   G+++    LFE+MPE+ + SW A+I G++ NG   + L  F +ML ++ V 
Sbjct: 269 TVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVP 328

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAAS 351
            ND T+V+ LSACA++GAL+ G  VH Y   +  GLKG +  G AL+DMYAKCG IE A 
Sbjct: 329 PNDATLVTVLSACARLGALDLGKWVHVYAESS--GLKGNVYVGNALMDMYAKCGIIENAI 386

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF     KDL++W  +I GLA+H R   A+  F +M  +G +PDG  F+ IL AC + G
Sbjct: 387 SVFRGMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMG 446

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------- 452
            V+    +F SM  DY I P ++H+  +V++L+R G+  Q                    
Sbjct: 447 LVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFVRKMPVEADGVIWAGL 506

Query: 453 ------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                 Y+N   ++ +  +L++L+PK+P++YV+LSNIY   GRW+DVAR++  M+    K
Sbjct: 507 LGACRIYKNVELAELALQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFK 566

Query: 504 KDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMP 549
           K PG S IEVN  V  F +    H   +EI+  L  ++   R  GY+P
Sbjct: 567 KLPGCSLIEVNDAVVEFYSLDERHPQIEEIYGVLRGLVKVLRSFGYVP 614


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  355 bits (912), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 215/602 (35%), Positives = 329/602 (54%), Gaps = 80/602 (13%)

Query: 79  IDYALSIFDHFTPKNLHIF--NVLIRGLAEN---SHFQSCISHFVFMLRLSVRPNRLTYP 133
           I YA  IF H     L  F  N++IR +  N       S IS ++ M    V P+  T+P
Sbjct: 8   IAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFP 66

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           F+  S  +   L LG+  H  I+  G++ D FVR  L +MY                   
Sbjct: 67  FLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY------------------- 107

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
                           S  G LR A  +F     K++ +W S+++ + + G +  A +LF
Sbjct: 108 ----------------SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLF 151

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-----DAGVRANDFTVVSALSACAK 308
           ++MPE+ V+SW+ +ING+   G+ ++AL +F +M      +A VR N+FT+ + LSAC +
Sbjct: 152 DEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGR 211

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTA 367
           +GALE G  VH YI      +   +GTAL+DMYAKCG++E A  VF     +KD+  ++A
Sbjct: 212 LGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSA 271

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           MI  LA++G  ++  Q F +M  S    P+   F+ IL AC + G +    ++F  M  +
Sbjct: 272 MICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEE 331

Query: 427 YFIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNSQN 458
           + I PS++H+  +V+L  R G  ++++ +                          +  + 
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  +L++L P +  +YVLLSN+YA  GRW +V  +R  M+ + I K PG SY+EV G VH
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVH 451

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLAL 575
            F  G    + ++ I++ L++IM   RE GY+  T+ VL ++ E +KE AL  HSEKLA+
Sbjct: 452 EFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAI 511

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AF L++T PGT ++I+K L ICGDCH +MK  SK+  REIV+RD  RFH+F+DG+CSCRD
Sbjct: 512 AFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRD 571

Query: 635 YW 636
           +W
Sbjct: 572 FW 573


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 216/637 (33%), Positives = 332/637 (52%), Gaps = 88/637 (13%)

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           S+F  +  K +++ +N +I   A +      +  F  M +LS+ PNR T+P   KS +SL
Sbjct: 40  SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             L  G+ +H      G   D FV   L DMY + G    A K+FDE PE+N    V+ W
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERN----VVSW 155

Query: 203 NVLINGCSKIGYLRKAVELF---------------------------------------- 222
             +I+G  +    R+AV LF                                        
Sbjct: 156 TSMISGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKS 215

Query: 223 ------GMMPKKN----VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                 G+  KK     +A   +L+D + + G++  + ++F+ M E  V SW ++I  ++
Sbjct: 216 VTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYA 275

Query: 273 QNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           QNG + +A ++F  M+  G VR N  T+ + L ACA  GAL+ G  +H+ +   +     
Sbjct: 276 QNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNL 335

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +GT++VDMY KCG +E A   F   K K++ +WT M+ G  +HG  ++A++ F +M+  
Sbjct: 336 VVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRC 395

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G +P+   F+++L AC ++G +K   ++F+ M+ ++ +EP ++H++ +V+LL R G   +
Sbjct: 396 GIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKE 455

Query: 452 GYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAA 483
            Y   Q                             S  KL +L P +   YVLLSNIYA 
Sbjct: 456 AYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYAD 515

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
            GRW DV R+R LM+   + K PG+S +E  G VH F  G   H   ++I+  L+++   
Sbjct: 516 AGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVK 575

Query: 542 AREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +E GYMP    VL+++  EEK   L  HSEKLA+AFG++ + PG+ I+I+K L ICGDC
Sbjct: 576 LQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDC 635

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           H  +K  SKI  REIV+RD+ RFH+FKDG CSC DYW
Sbjct: 636 HFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 63/388 (16%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIH Q  +    +   + + LI   S    ++ A  +FD    +N+  +  +I G  +N
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165

Query: 108 SHFQSCISHFVFMLRLSVRP-------------NRLTYPFVSKSVASLSLLSLGRGLHCL 154
              +  +  F+F   L V               + +    V  + A + + S+   +H L
Sbjct: 166 ERAREAV--FLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGL 223

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            VK G E    V   L D Y + G+   + KVFD   E +    V  WN LI   ++ G 
Sbjct: 224 AVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETD----VCSWNSLIAVYAQNGL 279

Query: 215 LRKAVELFGMMPKK----------------------------------------NVASWV 234
             +A  LF  M K+                                        N+    
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGT 339

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           S++D + + G ++ A + F+++  K V SWT M+ G+  +G  ++A+ +F++M+  G++ 
Sbjct: 340 SIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKP 399

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASL 352
           N  T VS L+AC+  G L+ G    N + C +F ++  I   + +VD+  + G ++ A  
Sbjct: 400 NYITFVSVLAACSHAGLLKEGWHWFNKMKC-EFDVEPGIEHYSCMVDLLGRAGYLKEAYG 458

Query: 353 VFGETKEK-DLLTWTAMIWGLAIHGRYE 379
           +  E K K D + W +++    IH   E
Sbjct: 459 LIQEMKVKPDFIVWGSLLGACRIHKNVE 486



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 91/215 (42%), Gaps = 16/215 (7%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K      N +T + ++     S + +  + IH Q++   L  +  + T ++        
Sbjct: 291 VKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGR 350

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A   FD    KN+  + V++ G   + H +  +  F  M+R  ++PN +T+  V  +
Sbjct: 351 VEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAA 410

Query: 139 VASLSLLSLG----RGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
            +   LL  G      + C   V+ G+E+ +     + D+  + G  + A+ +  E   K
Sbjct: 411 CSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSC----MVDLLGRAGYLKEAYGLIQEMKVK 466

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
                 ++W  L+  C     + K VEL  +  +K
Sbjct: 467 ---PDFIVWGSLLGACR----IHKNVELGEISARK 494


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  355 bits (911), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 212/644 (32%), Positives = 343/644 (53%), Gaps = 73/644 (11%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDH 88
           E+ I++ +    +  Q++Q+HA+I+L+ L  S  +  +LI + + L+  +D Y LSIF+ 
Sbjct: 46  ESQIVTTLDGCKNLTQIKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQ 105

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
               N  ++N LIRG       +     +  M +  V P   T+  + K+  +   + LG
Sbjct: 106 VNYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLG 165

Query: 149 RGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           R +H   I+  G   D  V   + DMY++ G      KVFDE P ++    V+ W  LI+
Sbjct: 166 RQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRD----VISWTELIS 221

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
              K G +  A ELF  +P K++ +W  ++ GF +    ++A   FE+M E         
Sbjct: 222 AYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQE--------- 272

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
                                  GV  ++ T++  +SACA++GA +    + +    ++F
Sbjct: 273 ----------------------FGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEF 310

Query: 328 GLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           G K +  +G+AL+DMY+KCG++  A  VF   KE+++ ++++MI G A+HGR   A++ F
Sbjct: 311 GGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLF 370

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M+ +  +P+   F+ +LTAC ++G V+     F+ M   Y I+PS  H+T +V+LL R
Sbjct: 371 DEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGR 430

Query: 446 VGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLL 477
            G+  + ++  +                             +   L +L+P    +Y+LL
Sbjct: 431 AGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILL 490

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN-GHVHRFEAGG--HKLAKEIHSK 534
           +NIYA+ GRW DV+ VR LM+ R ++K+P +S+IE   G VH F +G   H  + EI   
Sbjct: 491 ANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQA 550

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LED++     +GY P    V +++  E+K   L  HSEKLALAFGLI T PG+ I+IVK 
Sbjct: 551 LEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKN 610

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L IC DCHS++  AS+I+ REI++RD  RFH+F DG CSC ++W
Sbjct: 611 LRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 241/688 (35%), Positives = 338/688 (49%), Gaps = 87/688 (12%)

Query: 29  ITETHIISLIHSSNST---KQLRQIHAQII--LHNLFASSRITTQLISSASLHKSIDYAL 83
           ++   + SL+ S+ ST   +  R  HAQII  L N   S  I   L++  S     + A 
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSF-IYNHLVNMYSKLDRPNSAQ 62

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +      +++  +  LI G  +N  F S + HF  M R S++PN  T+P   K+  SL 
Sbjct: 63  LLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLR 122

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------KS 196
              +G+ +H L VK+G   D FV     DMY + G T  A K+FDE PE+N        S
Sbjct: 123 SPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLS 182

Query: 197 ESVL------------------------LWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
            SVL                         +   +N C+   YLR   +L G + +    +
Sbjct: 183 NSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEA 242

Query: 233 WVSLIDGFMR-KGDLKKAGE---LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
            VS+ +G +   G   + G    +F  + +   VSW +MI  + QN E EKA  +F +  
Sbjct: 243 DVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRAR 302

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SC---NDFGLKGAIGTALVDMYAK 343
             G+   DF V S LSACA +  LE G  VH     +C   N F     +G+ALVDMY K
Sbjct: 303 KEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACVVGNIF-----VGSALVDMYGK 357

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFL 401
           CG+IE A   F E  E++L+TW AMI G A  G+ + A+  F +M        P+   F+
Sbjct: 358 CGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFV 417

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------- 454
            +L+AC  +G V + +  F+SMR  Y IEP  +H+  VV+LL R G   Q YQ       
Sbjct: 418 CVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPI 477

Query: 455 -----------NSQNSFTK----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                       +   F K          L +L P    ++VLLSN++AA GRW++   V
Sbjct: 478 RPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLV 537

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R  M+   IKK  G S+I     VH F+A    H+   EI + L  +       GY+P T
Sbjct: 538 RKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDT 597

Query: 552 EWVLHNIKEEKEEALGC--HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
            + L ++ EE+E+A+    HSEK+ALAFGLI    G  I+I K L ICGDCHS +K+ S 
Sbjct: 598 SFALFDL-EEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISG 656

Query: 610 ISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           I  REI++RD   FH F+D  CSCRDYW
Sbjct: 657 IVGREIIVRDNNLFHRFRDNQCSCRDYW 684


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 215/660 (32%), Positives = 336/660 (50%), Gaps = 75/660 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H  II   +  ++ +   L+        +  A  +FD    K+   +N +I G  E+
Sbjct: 48  KQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEH 107

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            H +  +  F  M    V+PN  TY  + K+ ASLS L  G+ +H  I   G+E D  V 
Sbjct: 108 KHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVG 167

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
             L  MY + G    A ++FD       +  ++ W V+I   ++ G  ++A  L   M  
Sbjct: 168 TALLRMYGKCGSINEARRIFDNL----MNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQ 223

Query: 227 ---KKNVASWVSLIDGFMRKGDLK-----------------------------KAGEL-- 252
              K N  ++VS+++    +G LK                             K+G +  
Sbjct: 224 EGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDD 283

Query: 253 ----FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
               F++M  + VVSW  MI  F+++G   +A  +F QM   G + +    +S L+ACA 
Sbjct: 284 ARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACAS 343

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            GALE   ++H +   +   +   +GTALV MY+K G+I+ A +VF   K +++++W AM
Sbjct: 344 AGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAM 403

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I GLA HG  + A++ F++M   G +PD   F+A+L+AC ++G V    + + +M   Y 
Sbjct: 404 ISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYG 463

Query: 429 IEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL---------------- 464
           IEP V H   +V+LL R G+        D+      + ++  LL                
Sbjct: 464 IEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVA 523

Query: 465 ----QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
               +L PK+ ++YVLLSNIYA  G+W  V+ VRT+M+ R I+K+PG S+IEV+  +H F
Sbjct: 524 KERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIEVDNKIHDF 583

Query: 521 --EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAF 577
                 H   KEI+   + ++   + +GY+P T  VL N   ++KE  +  HSEKLA+ +
Sbjct: 584 LVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSHSEKLAIVY 643

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GL+ T PG  I++ K L +C DCH   K  SK+  REI++RD  RFH+FKDG CSC DYW
Sbjct: 644 GLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDGVCSCGDYW 703



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 129/301 (42%), Gaps = 17/301 (5%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N IT   I++   S  + K ++++H   +   L    R+ T L+   +   SID A 
Sbjct: 227 KP-NAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDAR 285

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD    +++  +NV+I   AE+         F+ M     +P+ + +  +  + AS  
Sbjct: 286 VVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAG 345

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L   + +H   + SG+E D  V   L  MY + G    A  VFD    +N    V+ WN
Sbjct: 346 ALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRN----VVSWN 401

Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-- 257
            +I+G ++ G  + A+E+F  M     K +  ++V+++      G + +    +  M   
Sbjct: 402 AMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV 461

Query: 258 ---EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
              E  V     M++   + G   +A      M    V  ++ T  + L +C   G +E 
Sbjct: 462 YGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNM---AVDPDEATWGALLGSCRTYGNVEL 518

Query: 315 G 315
           G
Sbjct: 519 G 519



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 99/227 (43%), Gaps = 8/227 (3%)

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ +    L  G+  + F  V  L  C K   L A  +VH+ I  +       +   L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            +Y +CG ++ A  VF    +K   +W AMI G   H   E A++ F++M + G +P+  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458
            ++ IL AC     +K        +R    +E  V+  T ++ +  + G  ++    ++ 
Sbjct: 131 TYMIILKACASLSALKWGKEVHACIRHG-GLESDVRVGTALLRMYGKCGSINE----ARR 185

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            F  L+        S+ ++   YA  G  K+  R+   M++   K +
Sbjct: 186 IFDNLMN---HDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPN 229


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 215/657 (32%), Positives = 346/657 (52%), Gaps = 72/657 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H  ++ + L  +  ++  LI+      ++  A  +FD    K++  +N +I G A N 
Sbjct: 215 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 274

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                +  F  M    VR +  ++  V K  A+L  L     LHC +VK G  +D  +R 
Sbjct: 275 LDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L   Y +      A ++F E        +V+ W  +I+G  +     +AV+LF  M +K
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEI---GCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391

Query: 229 NV---------------------------------ASWV--SLIDGFMRKGDLKKAGELF 253
            V                                 +S V  +L+D +++ G +++A ++F
Sbjct: 392 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-L 312
             + +K +V+W+AM+ G++Q GE E A+ MF ++   G++ N+FT  S L+ CA   A +
Sbjct: 452 SGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASM 511

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
             G + H +   +       + +AL+ MYAK GNIE+A  VF   +EKDL++W +MI G 
Sbjct: 512 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGY 571

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A HG+  +A+  FK+M     + DG  F+ +  AC ++G V+    +FD M  D  I P+
Sbjct: 572 AQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 631

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLL 464
            +H++ +V+L SR GQ  +  +  +N                            +  K++
Sbjct: 632 KEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKII 691

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
            +KP+  ++YVLLSN+YA  G W++ A+VR LM  R++KK+PG+S+IEV    + F AG 
Sbjct: 692 AMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQ 581
             H L  +I+ KLED+    ++ GY P T +VL +I +E KE  L  HSE+LA+AFGLI 
Sbjct: 752 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIA 811

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF-KDGTCSCRDYW 636
           T  G+ + I+K L +CGDCH ++K  +KI +REIV+RD+ RFH+F  DG CSC D+W
Sbjct: 812 TPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 149/542 (27%), Positives = 242/542 (44%), Gaps = 82/542 (15%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+H Q I         + T L+ +     +      +FD    +N+  +  LI G A N
Sbjct: 113 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARN 172

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL----GRGL--HCLIVKSGVE 161
           S     ++ F+ M     +PN  T+       A+L +L+     GRGL  H ++VK+G++
Sbjct: 173 SMNDEVLTLFMRMQNEGTQPNSFTF------AAALGVLAEEGVGGRGLQVHTVVVKNGLD 226

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
               V   L ++Y++ G  R A  +FD+T  K    SV+ WN +I+G +  G   +A+ +
Sbjct: 227 KTIPVSNSLINLYLKCGNVRKARILFDKTEVK----SVVTWNSMISGYAANGLDLEALGM 282

Query: 222 FGMMPKKNV----ASWVSLID---------------------GFMRKGDLK--------- 247
           F  M    V    +S+ S+I                      GF+   +++         
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSK 342

Query: 248 -----KAGELFEQMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
                 A  LF+++   G VVSWTAMI+GF QN   E+A+ +F +M   GVR N+FT   
Sbjct: 343 CTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSV 402

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L+A   +   E    VH  +   ++     +GTAL+D Y K G +E A+ VF    +KD
Sbjct: 403 ILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS----GQVKLAL 417
           ++ W+AM+ G A  G  E AI+ F ++   G +P+   F +IL  C  +    GQ K   
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477
            F    R D     S+   + ++ + ++ G       N +++     + + K   S+  +
Sbjct: 519 GFAIKSRLD----SSLCVSSALLTMYAKKG-------NIESAEEVFKRQREKDLVSWNSM 567

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLED 537
            + YA  G+      V   M++R +K D G ++I V      F A  H    E   K  D
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMD-GVTFIGV------FAACTHAGLVEEGEKYFD 620

Query: 538 IM 539
           IM
Sbjct: 621 IM 622



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 168/377 (44%), Gaps = 48/377 (12%)

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           +SS+ L+     A ++FD    ++   +  L+ G + +   Q     F+ + RL +  + 
Sbjct: 38  VSSSRLYN----AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDC 93

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
             +  V K  A+L     GR LHC  +K G   D  V   L D Y++    +   KVFDE
Sbjct: 94  SIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK---------------- 227
             E+N    V+ W  LI+G ++     + + LF      G  P                 
Sbjct: 154 MKERN----VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGV 209

Query: 228 -----------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                            K +    SLI+ +++ G+++KA  LF++   K VV+W +MI+G
Sbjct: 210 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           ++ NG   +AL MF+ M    VR ++ +  S +  CA +  L    ++H  +    F   
Sbjct: 270 YAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFD 329

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
             I TAL+  Y+KC  +  A  +F E     ++++WTAMI G   +   E+A+  F +M 
Sbjct: 330 QNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMK 389

Query: 390 YSGTEPDGTVFLAILTA 406
             G  P+   +  ILTA
Sbjct: 390 RKGVRPNEFTYSVILTA 406



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 84/168 (50%), Gaps = 4/168 (2%)

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G +    L  A  LF++ P +   S+ +++ GFS++G  ++A  +F  +   G+  +   
Sbjct: 36  GTVSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSI 95

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAASLVFGE 356
             S L   A +     G ++H    C  FG     ++GT+LVD Y K  N +    VF E
Sbjct: 96  FSSVLKVSATLCDELFGRQLH--CQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDE 153

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            KE++++TWT +I G A +   ++ +  F +M   GT+P+   F A L
Sbjct: 154 MKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL 201


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 206/681 (30%), Positives = 363/681 (53%), Gaps = 75/681 (11%)

Query: 27   NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            N IT  ++++      + K  + +H+ I+     +   + T L+   +   S      +F
Sbjct: 344  NRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVF 403

Query: 87   DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            +    ++L  +N +I GLAE  +++     +  M R  + PN++TY  +  +  + + L 
Sbjct: 404  EKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALH 463

Query: 147  LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             GR +H  +VK G  +D  V+  L  MY + G  + A  +F++   K+    ++ W  +I
Sbjct: 464  WGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKD----IISWTAMI 519

Query: 207  NGCSKIGYLRKAVELF------GMMPKK-------NVAS------W-------------- 233
             G +K G   +A+ +F      G+ P +       N  S      W              
Sbjct: 520  GGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLA 579

Query: 234  ------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                   +L++ +   G +K A ++F++M ++ +V++ AMI G++ +   ++AL +F ++
Sbjct: 580  TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRL 639

Query: 288  LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
             + G++ +  T ++ L+ACA  G+LE    +H+ +  + +    ++G ALV  YAKCG+ 
Sbjct: 640  QEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSF 699

Query: 348  EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
              A LVF +  ++++++W A+I G A HGR +  +Q F++M   G +PD   F+++L+AC
Sbjct: 700  SDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSAC 759

Query: 408  WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNS 459
             ++G ++    +F SM  D+ I P+++H+  +V+LL R GQ         +  +Q +   
Sbjct: 760  SHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRI 819

Query: 460  FTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
            +  LL                    +L P + + YV LS++YAA G W   A++R LM++
Sbjct: 820  WGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQ 879

Query: 500  RSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
            R + K+PG S+IEV   +H F  E   H  +++I+++L+ +    + +GY+P T  V+H+
Sbjct: 880  RGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHD 939

Query: 558  IKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
            + E EKE A+  HSE+LA+A+GLI T PGT I+I K L +C DCH+  K+ +KI  REIV
Sbjct: 940  VDEGEKENAVCHHSERLAIAYGLISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIV 999

Query: 617  LRD-TRFHYFKDGTCSCRDYW 636
             RD  RFH+FKDG CSC DYW
Sbjct: 1000 ARDVNRFHHFKDGVCSCGDYW 1020



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 137/517 (26%), Positives = 239/517 (46%), Gaps = 55/517 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T   ++S   S ++ +  R+IH + +   L     +   +++  +   SI  A  +FD  
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             K++  + ++I G A+  H +     F  M +  V PNR+TY  V  + +  + L  G+
Sbjct: 306 ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGK 365

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  I+ +G E D  V   L  MY + G  +   +VF    EK  +  ++ WN +I G 
Sbjct: 366 TVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVF----EKLVNRDLIAWNTMIGGL 421

Query: 210 SKIGYLRKAVELF------GMMPKKNVASWVSLI---------------------DGFM- 241
           ++ G   +A E++      GMMP K   ++V L+                     DGFM 
Sbjct: 422 AEGGNWEEASEIYHQMQREGMMPNK--ITYVILLNACVNPTALHWGREIHSRVVKDGFMF 479

Query: 242 -------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                        R G +K A  LF +M  K ++SWTAMI G +++G   +ALA+F  M 
Sbjct: 480 DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQ 539

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            AG++ N  T  S L+AC+   AL+ G R+H  +          +   LV+MY+ CG+++
Sbjct: 540 QAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVK 599

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF    ++D++ + AMI G A H   ++A++ F ++   G +PD   ++ +L AC 
Sbjct: 600 DARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACA 659

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
            SG ++ A      +  D ++       T + N L         + ++   F K+++   
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSD-----TSLGNALVSTYAKCGSFSDALLVFDKMMK--- 711

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           ++  S+  +    A  GR +DV ++   M+   IK D
Sbjct: 712 RNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPD 748



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 234/527 (44%), Gaps = 56/527 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLA 105
           R++H  II H           LI+      SI+ A  +++    T + +H +N ++ G  
Sbjct: 161 REVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYV 220

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           +  + +  +     M +  +   R T   +  S  S S L  GR +H   +K+ + +D  
Sbjct: 221 QYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVN 280

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
           V   + +MY + G    A +VFD    K +++SV+ W ++I G +  G+   A E+F   
Sbjct: 281 VANCILNMYAKCGSIHEAREVFD----KMETKSVVSWTIIIGGYADCGHSEIAFEIFQKM 336

Query: 223 ---GMMPKK---------------------------------NVASWVSLIDGFMRKGDL 246
              G++P +                                 ++A   +L+  + + G  
Sbjct: 337 QQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSY 396

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           K   ++FE++  + +++W  MI G ++ G  E+A  ++ QM   G+  N  T V  L+AC
Sbjct: 397 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
               AL  G  +H+ +  + F    ++  AL+ MYA+CG+I+ A L+F +   KD+++WT
Sbjct: 457 VNPTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWT 516

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI GLA  G   +A+  F+ M  +G +P+   + +IL AC     +         +   
Sbjct: 517 AMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQV--- 573

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
             IE  +     V N L  +       ++++  F ++ Q   +   +Y  +   YAA   
Sbjct: 574 --IEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQ---RDIVAYNAMIGGYAAHNL 628

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHS 533
            K+  ++   +Q   +K D   +YI +        +G  + AKEIHS
Sbjct: 629 GKEALKLFDRLQEEGLKPDK-VTYINMLNAC--ANSGSLEWAKEIHS 672



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 159/346 (45%), Gaps = 28/346 (8%)

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWV-------------SLIDGFMRKGDLKKAGEL 252
           +N C  +  L++ +E+  ++  + V   +             +LI+ +++ G +++A ++
Sbjct: 139 VNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQV 198

Query: 253 FEQM--PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           + ++   E+ V SW AM+ G+ Q G  E+AL +  +M   G+     T +  LS+C    
Sbjct: 199 WNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATTMRLLSSCKSPS 258

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           ALE G  +H             +   +++MYAKCG+I  A  VF + + K +++WT +I 
Sbjct: 259 ALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIG 318

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL-NFFDSMRFDYFI 429
           G A  G  E A + F+KM   G  P+   ++ +L A  +SG   L       S   +   
Sbjct: 319 GYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA--FSGPAALKWGKTVHSHILNAGH 376

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
           E  +   T +V + ++ G     Y++ +  F KL+    +   ++  +    A  G W++
Sbjct: 377 ESDLAVGTALVKMYAKCGS----YKDCRQVFEKLVN---RDLIAWNTMIGGLAEGGNWEE 429

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKL 535
            + +   MQR  +  +     I +N  V+          +EIHS++
Sbjct: 430 ASEIYHQMQREGMMPNKITYVILLNACVN---PTALHWGREIHSRV 472



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 157/349 (44%), Gaps = 17/349 (4%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A+A   +++ +    N +T T I++   S  +    R+IH Q+I   L   + +   L++
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVN 590

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             S+  S+  A  +FD  T +++  +N +I G A ++  +  +  F  +    ++P+++T
Sbjct: 591 MYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVT 650

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  +  + A+   L   + +H L++K G   D  +   L   Y + G    A  VFD+  
Sbjct: 651 YINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMM 710

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLK 247
           ++N    V+ WN +I GC++ G  +  ++LF  M     K ++ ++VSL+      G L+
Sbjct: 711 KRN----VISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLE 766

Query: 248 KAGELFEQMPEKGVVSWT-----AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           +    F  M     ++ T      M++   + G+ ++  A+   M     +AN     + 
Sbjct: 767 EGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM---PFQANTRIWGAL 823

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           L AC   G +    R        D     A+  AL  MYA  G  ++A+
Sbjct: 824 LGACRIHGNVPVAERAAESSLKLDPD-NAAVYVALSHMYAAAGMWDSAA 871



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           ++A+ +   +   G R N    +  L  C +V  L AG  VH +I  +   L      AL
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 338 VDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           ++MY +CG+IE A  V+ +    E+ + +W AM+ G   +G  E+A++  ++M   G   
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 396 DGTVFLAILTAC 407
                + +L++C
Sbjct: 243 GRATTMRLLSSC 254


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  355 bits (910), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 211/627 (33%), Positives = 341/627 (54%), Gaps = 67/627 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ-SCISHFVFMLRLS--- 124
           ++S  + +  +D A S+FD    KN   +N L+    +NS  + +C+   +F  R +   
Sbjct: 163 MLSGYAQNGCVDDARSVFDRMPEKNDVSWNALLSAYVQNSKMEEACM---LFKSRENWAL 219

Query: 125 VRPNRLTYPFVSK----------------SVASLSLLSLGRG-------LHCLIVKSGVE 161
           V  N L   FV K                 V S + +  G            L  +S V+
Sbjct: 220 VSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQ 279

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
            D F    +   Y+Q      A ++FD+ PE+N+    + WN ++ G  +   +  A EL
Sbjct: 280 -DVFTWTAMVSGYIQNRMVEEARELFDKMPERNE----VSWNAMLAGYVQGERMEMAKEL 334

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           F +MP +NV++W ++I G+ + G + +A  LF++MP++  VSW AMI G+SQ+G + +AL
Sbjct: 335 FDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEAL 394

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            +F QM   G R N  +  SALS CA V ALE G ++H  +    +     +G AL+ MY
Sbjct: 395 RLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMY 454

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            KCG+IE A+ +F E   KD+++W  MI G + HG  E A+++F+ M   G +PD    +
Sbjct: 455 CKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMV 514

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN---- 455
           A+L+AC ++G V     +F +M  DY + P+ +H+  +V+LL R G  +D+         
Sbjct: 515 AVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPF 574

Query: 456 ----------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                                 ++ +  K+  ++P++   YVLLSN+YA+ GRW DV ++
Sbjct: 575 EPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKL 634

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R  M+ + +KK PG+S+IE+    H F  G   H    EI + LE++    ++ GY+  T
Sbjct: 635 RVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKT 694

Query: 552 EWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
             VLH++ +EEKE  +  HSE+LA+A+G+++ + G  I+++K L +C DCH+ +KY ++I
Sbjct: 695 SVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARI 754

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + R I+LRD  RFH+FKDG+CSC DYW
Sbjct: 755 TGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 158/340 (46%), Gaps = 22/340 (6%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP- 127
           +IS    +   + A  +FD    ++L  +NV+I+G   N +       F  M    V   
Sbjct: 101 MISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIMPERDVCSW 160

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N +   +        +     R    +  K+ V ++A     L   YVQ  K   A  +F
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDR----MPEKNDVSWNA-----LLSAYVQNSKMEEACMLF 211

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
               +  ++ +++ WN L+ G  K   + +A + F  M  ++V SW ++I G+ + G + 
Sbjct: 212 ----KSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKID 267

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A +LF++ P + V +WTAM++G+ QN   E+A  +F +M +     N+ +  + L+   
Sbjct: 268 EARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPE----RNEVSWNAMLAGYV 323

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +   +E    + + + C +     +    ++  YA+CG I  A  +F +  ++D ++W A
Sbjct: 324 QGERMEMAKELFDVMPCRNV----STWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAA 379

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           MI G +  G   +A++ F +M   G   + + F + L+ C
Sbjct: 380 MIAGYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTC 419



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 163/353 (46%), Gaps = 51/353 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y++ G+   A +VF   P      S + +N +I+G  + G    A +LF  MP++++ SW
Sbjct: 74  YMRTGRCNEALRVFKRMPRW----SSVSYNGMISGYLRNGEFELARKLFDEMPERDLVSW 129

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             +I G++R  +L KA ELFE MPE+ V SW  M++G++QNG  + A ++F +M +    
Sbjct: 130 NVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPE---- 185

Query: 294 ANDFTVVSALSACAKVGALEAG----------------------VRVHNYISCNDF---- 327
            ND +  + LSA  +   +E                        V+    +    F    
Sbjct: 186 KNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSM 245

Query: 328 GLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
            ++  +    ++  YA+ G I+ A  +F E+  +D+ TWTAM+ G   +   E+A + F 
Sbjct: 246 NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFD 305

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           KM     E +   + A+L       ++++A   FD M        +V     ++   ++ 
Sbjct: 306 KM----PERNEVSWNAMLAGYVQGERMEMAKELFDVMPC-----RNVSTWNTMITGYAQC 356

Query: 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           G+ S+    ++N F K+ +   + P S+  +   Y+  G   +  R+   M+R
Sbjct: 357 GKISE----AKNLFDKMPK---RDPVSWAAMIAGYSQSGHSFEALRLFVQMER 402



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 14/221 (6%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           WNV I+   + G   +A+ +F  MP+ +  S+  +I G++R G+ + A +LF++MPE+ +
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW  MI G+ +N    KA  +F  M +  V + +    + LS  A+ G ++    V + 
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWN----TMLSGYAQNGCVDDARSVFDR 182

Query: 322 I-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           +   ND         AL+  Y +   +E A ++F   +   L++W  ++ G     +  +
Sbjct: 183 MPEKNDVSW-----NALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVE 237

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           A Q+F  M       D   +  I+T    SG++  A   FD
Sbjct: 238 ARQFFDSM----NVRDVVSWNTIITGYAQSGKIDEARQLFD 274


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 216/658 (32%), Positives = 335/658 (50%), Gaps = 73/658 (11%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           + P+++  +  +    +T   +  L+    + ++  ++HA  +   +     +  +L  +
Sbjct: 17  VLPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRA 76

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIF-NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
            +    +D  +++    TP    +F    I   +      + ++    ML   + P   T
Sbjct: 77  YAASDRLDLTVTLL-RLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHT 135

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
              +S S+ +   L+LGR LH    K  +  D++V   L  MY + G    A  +FDE  
Sbjct: 136 ---LSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE-- 190

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                                            MP  +V    +++  + + G L  A E
Sbjct: 191 ---------------------------------MPDPHVVPVTAMLTCYAKMGALDDARE 217

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF+ MP K  + W AMI+G++Q+G   +AL +F  ML +GV  ++  ++ ALSA A++G 
Sbjct: 218 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 277

Query: 312 LEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            E+G  +H+Y+ +     L   +GTAL+DMY KCG++E A  VF    +KD++ W AMI 
Sbjct: 278 AESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMIN 337

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G A+HG   +A++ F ++   G  P    F+ +L AC +SG V     FF SM  +Y I 
Sbjct: 338 GYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 397

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------FTKLLQLKPKHPSS--------- 473
           P ++H+  +V+LL R G   + +   Q+         +  LL     H +          
Sbjct: 398 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADY 457

Query: 474 -----------YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
                      Y+LLSNIYAA G W++VARVR++M+   I+K+PG S IEV   V+ F A
Sbjct: 458 LVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 517

Query: 523 G--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGL 579
           G   H    EI++ LE +    +EQG++P TE VLH++ E  KE+AL  HSEKLA+AFGL
Sbjct: 518 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 577

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I T PG TIKIVK L  C DCH+++K  SKI+ R+IV RD  RFH+F DG+C+C DYW
Sbjct: 578 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 216/658 (32%), Positives = 335/658 (50%), Gaps = 73/658 (11%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           + P+++  +  +    +T   +  L+    + ++  ++HA  +   +     +  +L  +
Sbjct: 16  VLPSSSASTGGQQHGVLTADRVAGLLTGCATLRRTGELHAAAVRAGVDGDRAVGFRLQRA 75

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIF-NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
            +    +D  +++    TP    +F    I   +      + ++    ML   + P   T
Sbjct: 76  YAASDRLDLTVTLL-RLTPDPTTVFYTSAIHAHSSRGLHLAALALLSEMLGRGLIPTSHT 134

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
              +S S+ +   L+LGR LH    K  +  D++V   L  MY + G    A  +FDE  
Sbjct: 135 ---LSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDE-- 189

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                                            MP  +V    +++  + + G L  A E
Sbjct: 190 ---------------------------------MPDPHVVPVTAMLTCYAKMGALDDARE 216

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF+ MP K  + W AMI+G++Q+G   +AL +F  ML +GV  ++  ++ ALSA A++G 
Sbjct: 217 LFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGT 276

Query: 312 LEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            E+G  +H+Y+ +     L   +GTAL+DMY KCG++E A  VF    +KD++ W AMI 
Sbjct: 277 AESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMIN 336

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G A+HG   +A++ F ++   G  P    F+ +L AC +SG V     FF SM  +Y I 
Sbjct: 337 GYAMHGDSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIV 396

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------FTKLLQLKPKHPSS--------- 473
           P ++H+  +V+LL R G   + +   Q+         +  LL     H +          
Sbjct: 397 PKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADY 456

Query: 474 -----------YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
                      Y+LLSNIYAA G W++VARVR++M+   I+K+PG S IEV   V+ F A
Sbjct: 457 LVAGGLANSGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVA 516

Query: 523 G--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGL 579
           G   H    EI++ LE +    +EQG++P TE VLH++ E  KE+AL  HSEKLA+AFGL
Sbjct: 517 GDMSHPRTDEIYAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGL 576

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I T PG TIKIVK L  C DCH+++K  SKI+ R+IV RD  RFH+F DG+C+C DYW
Sbjct: 577 ISTAPGETIKIVKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 213/633 (33%), Positives = 324/633 (51%), Gaps = 78/633 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LIS    +  +  A  +FD    +N+  +  ++RG   N         F  M   +V   
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNV--- 148

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
                 VS +V    LL  GR      +     E D     ++   Y + G+   A  +F
Sbjct: 149 ------VSWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           DE P++N    V+ W  +++G ++ G +  A +LF +MP++N  SW +++ G+   G ++
Sbjct: 203 DEMPKRN----VVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMR 258

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA--------------------------- 280
           +A  LF+ MP K VV    MI GF  NGE +KA                           
Sbjct: 259 EASSLFDAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGY 318

Query: 281 ----LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
               L +F +M   G+  N  +++S LS C  + +L+ G +VH  +  ++F     + + 
Sbjct: 319 ELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASV 378

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ MY KCGN+  A  VF     KD++ W +MI G + HG  E+A+  F  M  SG  PD
Sbjct: 379 LITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPD 438

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN- 455
              F+ +L+AC YSG+VK  L  F++M+  Y +EP ++H+  +V+LL R  Q ++  +  
Sbjct: 439 DVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLV 498

Query: 456 ---------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                                      ++ +  KL QL+PK+   YVLLSN+YA +GRW+
Sbjct: 499 EKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWR 558

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIHSKLEDIMAGAREQ 545
           DV  +R  ++ RS+ K PG S+IEV   VH F  G   GH     I   LE +    RE 
Sbjct: 559 DVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREA 618

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P   +VLH++ +EEK  +LG HSEKLA+A+GL++   G  I+++K L +CGDCHS +
Sbjct: 619 GYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAI 678

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  +K++ REI+LRD  RFH+FKDG CSC+DYW
Sbjct: 679 KLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 138/250 (55%), Gaps = 14/250 (5%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y + G+   A KVFDETP  +++ S   WN ++    +    R+A+ LF  MP++N  SW
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSS--WNAMVAAYFEARQPREALLLFEKMPQRNTVSW 89

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             LI G ++ G L +A  +F+ MP++ VVSWT+M+ G+ +NG+  +A  +F+ M    V 
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV 149

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           +  +TV+  L    + G ++   ++ + +   D        T ++  Y + G ++ A  +
Sbjct: 150 S--WTVM--LGGLLQEGRVDDARKLFDMMPEKDV----VAVTNMIGGYCEEGRLDEARAL 201

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E  +++++TWTAM+ G A +G+ + A + F+ M     E +   + A+L    +SG++
Sbjct: 202 FDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVM----PERNEVSWTAMLLGYTHSGRM 257

Query: 414 KLALNFFDSM 423
           + A + FD+M
Sbjct: 258 REASSLFDAM 267



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 106/233 (45%), Gaps = 15/233 (6%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +  ++I    L+  +D A  +F     ++   ++ +I+      +    +  F  M R  
Sbjct: 274 VCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREG 333

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  N  +   V     SL+ L  G+ +H  +V+S  + D +V   L  MYV+ G    A 
Sbjct: 334 LALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAK 393

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-----PKKNVASWVSLIDG 239
           +VF+  P K+    V++WN +I G S+ G   +A+ +F  M     P  +V +++ ++  
Sbjct: 394 QVFNRFPLKD----VVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDV-TFIGVLSA 448

Query: 240 FMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
               G +K+  ELFE M      E G+  +  +++   +  +  +A+ +  +M
Sbjct: 449 CSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKM 501



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/273 (22%), Positives = 117/273 (42%), Gaps = 34/273 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIIL----HNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           ++S+  S  S    +Q+HAQ++      +L+ +S + T  +   +L +    A  +F+ F
Sbjct: 344 VLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVR----AKQVFNRF 399

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV----SKSVASLSLL 145
             K++ ++N +I G +++   +  ++ F  M    V P+ +T+  V    S S      L
Sbjct: 400 PLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGL 459

Query: 146 SLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
            L   + C   V+ G+E+ A     L D+  +  +   A K+ ++ P +  +   ++W  
Sbjct: 460 ELFETMKCKYQVEPGIEHYAC----LVDLLGRADQVNEAMKLVEKMPMEPDA---IVWGA 512

Query: 205 LINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           L+  C    K+     AVE    +  KN   +V L + +  KG  +    L E++  + V
Sbjct: 513 LLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREKIKARSV 572

Query: 262 V-----SWTA------MINGFSQNGEAEKALAM 283
                 SW        M  G    G  E+ + M
Sbjct: 573 TKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIM 605


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 220/635 (34%), Positives = 340/635 (53%), Gaps = 100/635 (15%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNL 94
           S+I +    K L+QIHA+II+  L  +  + T+L+S A    S I Y   +F      + 
Sbjct: 24  SIILAGPRLKPLQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDT 83

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            +F+ LI   ++ S  Q  +  +  ML  ++  +  T+  V                   
Sbjct: 84  FLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTFSAV------------------- 124

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            +KS  +  AF           +G+T                   +  +V I G     Y
Sbjct: 125 -IKSSADLTAF----------SIGET-------------------IHCHVYICGYGLDAY 154

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           ++ A                 L+  + + G +  A ++F++MPEK VV+W +MI+G+ QN
Sbjct: 155 VQAA-----------------LVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQN 197

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  ++A+ +FF M D GV+ +  T VS LSACA+VGA+  G  VH YI+ N F L   +G
Sbjct: 198 GFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLG 257

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TAL++MY++CGN+  A  VF   +EK+++ WTAMI G  +HG   QAI+ F +M + G  
Sbjct: 258 TALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPR 317

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   F+A+L+AC ++G V      F +M+ +Y + PSV+H   +V++L R G  ++ YQ
Sbjct: 318 PNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQ 377

Query: 455 NSQNSFTK-----------------------------LLQLKPKHPSSYVLLSNIYAAEG 485
             +N+  K                             LL ++P++P  YV+LSNIYA  G
Sbjct: 378 FIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPENPGHYVMLSNIYALAG 437

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR 543
           R   V ++R +M R  +KK+ G+S I+V+  V+ F  G   H    +I+  L+++M+  R
Sbjct: 438 RMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPKTNQIYLYLDELMSRCR 497

Query: 544 EQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
           E GY+P +E V+H ++EE+ E AL  HSEKLA+AFGL++T  G  I+IVK L +C DCH+
Sbjct: 498 EAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGVAIRIVKNLRMCEDCHT 557

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +KY S I+ REI +RD  RFH+FKDG+CSC+DYW
Sbjct: 558 AIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  354 bits (908), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 315/587 (53%), Gaps = 75/587 (12%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           MLR    PN  T+PF  KS A+LSL   G+ LHC + K+G   + FV+  L  MY +   
Sbjct: 1   MLRSGASPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSL 60

Query: 180 TRGAFKVFDETPEKNK------------------SESVLLW------NVLINGCSKIGYL 215
              A K+FDE P+  K                   + V+L+       V ING + +G +
Sbjct: 61  IDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLV 120

Query: 216 RKA---------------VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +                    FG+    +V +   L+  +++ G++    +LF++MP KG
Sbjct: 121 QPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGN--CLLTMYVKSGEIDCGRKLFDEMPRKG 178

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +++W AMING++QNG A   L ++ +M   G   +  T+V  LS+CA +GAL  G  V  
Sbjct: 179 LITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVER 238

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            +    F     +  ALV+MYA+CGN++ A  +F     K +++WTA+I G  +HG+ E 
Sbjct: 239 KMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEV 298

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+  F +M+  G +PDGT F+++L+AC ++G     L++F  M   Y + P  +H++ +V
Sbjct: 299 AVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMV 358

Query: 441 NLLSRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPS 472
           +LL R G+ ++                          ++N   ++ +F ++++L+P +  
Sbjct: 359 DLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTG 418

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            YVLLSN+Y   G  + + RVR LM++R +KKDPG SY+E  G VH F AG   H    E
Sbjct: 419 YYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNE 478

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
           I+ KL ++    ++   + G +   H  +EE   ++G HSEKLA+AF L+ T   T I I
Sbjct: 479 IYKKLNELENLVKD---LDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIII 535

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K L ICGDCH  +K  SKI  R+ V+RD TRFH+FK+G CSC++YW
Sbjct: 536 IKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 109/403 (27%), Positives = 178/403 (44%), Gaps = 53/403 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGL 104
           +Q+H  +          + T LIS       ID A  +FD   P++  +   +N L+ G 
Sbjct: 30  KQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDE-NPQSRKLTVCYNSLLSGY 88

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           A NS  +  +  F  M  L V  N +T   + +       L LG  +H   VK G++ D+
Sbjct: 89  ALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDS 148

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            V   L  MYV+ G+     K+FDE P K     ++ WN +ING ++ G     +EL+  
Sbjct: 149 SVGNCLLTMYVKSGEIDCGRKLFDEMPRK----GLITWNAMINGYAQNGLANNVLELYKE 204

Query: 225 MPKK----------------------NVASWV-----------------SLIDGFMRKGD 245
           M  K                      +V   V                 +L++ + R G+
Sbjct: 205 MESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGN 264

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           LKKA ++F+ MP K VVSWTA+I G+  +G+ E A+ +F +M+  G++ +    VS LSA
Sbjct: 265 LKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSA 324

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDL 362
           C+  G    G+     +    +GL+      + +VD+  + G + EA  L+       D 
Sbjct: 325 CSHAGLTNKGLDYFGVME-RKYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADG 383

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
             W A++    IH   E A   F++++    EP  T +  +L+
Sbjct: 384 ALWGALLGACKIHRNVELAELAFEQVIE--LEPTNTGYYVLLS 424


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  354 bits (908), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 210/637 (32%), Positives = 327/637 (51%), Gaps = 37/637 (5%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H++     S S  + ++IH   + +   A S +  +L         +  A  +FD     
Sbjct: 13  HLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNP 72

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           ++ ++N +IR  A N  F   I  +  ML L VRPN+ TYPFV K+ + L  +  G  +H
Sbjct: 73  SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIH 132

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
                 G+E D FV   L D Y + G    A ++F     ++    V+ WN +I GCS  
Sbjct: 133 SHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRD----VVAWNAMIAGCSLY 188

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD-LKKAGELFEQMPEKGVVSWTAMINGF 271
           G    AV+L   M ++ +    S I G +     L  A ++F+ M  +  VSW+AMI G+
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGGY 248

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
             +   ++AL +F  M  +G+  +  T++  L AC+ + AL+ G   H Y+    F    
Sbjct: 249 VASDCMKEALDIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDT 308

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            I  AL+DMY+KCG I  A  VF      D+++W AMI G  IHG   +A+  F  ++  
Sbjct: 309 LICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLAL 368

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G +PD   F+ +L++C +SG V     +FD+M  D+ I P ++H   +V++L R G   +
Sbjct: 369 GLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDE 428

Query: 452 GYQNSQNS----------------------------FTKLLQLKPKHPSSYVLLSNIYAA 483
            +   +N                               K+  L P+   ++VLLSNIY+A
Sbjct: 429 AHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSA 488

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
            GRW D A +R   +   +KK PG S+IE+NG VH F  G   H    +I+ KLE+++  
Sbjct: 489 AGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVE 548

Query: 542 AREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +  GY     +V  ++ +EEKE+ L  HSEKLA+AFG++    G  I + K L +CGDC
Sbjct: 549 MKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDC 608

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H+ +K+ + I++REI +RD  RFH+FK+GTC+C D+W
Sbjct: 609 HTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 220/663 (33%), Positives = 348/663 (52%), Gaps = 78/663 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H Q I         + T L+      +S++    +FD    KN+  +  L+ G  +N
Sbjct: 112 KQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQN 171

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M    ++PN  T+  V   +A+   +  G  +H +++KSG++   FV 
Sbjct: 172 GLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVG 231

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             + +MY +      A  VFD    +N     + WN +I G    G   +A ELF  M  
Sbjct: 232 NSMVNMYSKSLMVSDAKAVFDSMENRN----AVSWNSMIAGFVTNGLDLEAFELFYRMRL 287

Query: 228 KNV-------ASWV--------------------------------SLIDGFMRKGDLKK 248
           + V       A+ +                                +L+  + +  ++  
Sbjct: 288 EGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDD 347

Query: 249 AGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSAC 306
           A +LF  M   + VVSWTA+I+G+ QNG  ++A+ +F QM  + GV  N+FT  S L+AC
Sbjct: 348 AFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNAC 407

Query: 307 A-KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           A    ++E G + H+    + F     + +ALV MYAK GNIE+A+ VF    ++DL++W
Sbjct: 408 AAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSW 467

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            +MI G A HG  +++++ F++M     E DG  F+ +++AC ++G V     +FD M  
Sbjct: 468 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 527

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQ 457
           DY I P+++H++ +V+L SR G   +                              Q  +
Sbjct: 528 DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGE 587

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  KL+ L+P+  ++YVLLSNIYA  G W++ A+VR LM  + +KK+ G+S+IEV    
Sbjct: 588 LAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKT 647

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
             F AG   H  +  I+ KLE++    ++ GY P T++VLH+++EE KE  L  HSE+LA
Sbjct: 648 FSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLA 707

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCR 633
           +AFGLI T PGT I+IVK L +CGDCH+++K  SKI  R+IV+RD+ RFH+FK G+CSC 
Sbjct: 708 IAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCG 767

Query: 634 DYW 636
           DYW
Sbjct: 768 DYW 770



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 160/370 (43%), Gaps = 49/370 (13%)

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           ++  +FD    + L   N L+   + N   +  ++ F+ + R     +  +   V K   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L    +G+ +HC  +K G   D  V   L DMY++        +VFDE   KN    V+
Sbjct: 104 CLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKN----VV 159

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK-------- 248
            W  L+ G  + G   +A++LF  M     K N  ++ +++ G    G ++K        
Sbjct: 160 SWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMV 219

Query: 249 ---------------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                                      A  +F+ M  +  VSW +MI GF  NG   +A 
Sbjct: 220 IKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAF 279

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN--DFGLKGAIGTALVD 339
            +F++M   GV+       + +  CA +  +    ++H  +  N  DF L   I TAL+ 
Sbjct: 280 ELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLN--IKTALMV 337

Query: 340 MYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDG 397
            Y+KC  I+ A  +F      +++++WTA+I G   +GR ++A+  F +M    G EP+ 
Sbjct: 338 AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNE 397

Query: 398 TVFLAILTAC 407
             F ++L AC
Sbjct: 398 FTFSSVLNAC 407



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 89/165 (53%), Gaps = 2/165 (1%)

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           +LF++ P++G+     ++  FS+N + ++AL +F  +  +G   +  ++   L  C  + 
Sbjct: 47  QLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLF 106

Query: 311 ALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
               G +VH   I C  F    ++GT+LVDMY K  ++E    VF E + K++++WT+++
Sbjct: 107 DRIVGKQVHCQCIKCG-FVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLL 165

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            G   +G  EQA++ F +M   G +P+   F A+L      G V+
Sbjct: 166 AGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVE 210


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 200/614 (32%), Positives = 329/614 (53%), Gaps = 107/614 (17%)

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           +P+   Y  + +S     LL  G+ +H  I  SG     F+   L +MY +      + K
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRK---------------------------- 217
           +FDE PE++    +  WN+LI+G +K+G L++                            
Sbjct: 127 LFDEMPERD----LCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDR 182

Query: 218 ---AVELFGMMPKKN--------VAS--------------------------------WV 234
              A+ELF MM + +        V+S                                W 
Sbjct: 183 PNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWS 242

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L D + + G +++A  +F++M ++ +V+WTAMI+ + Q+G  ++   +F  +L +G+R 
Sbjct: 243 ALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRP 302

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N+FT    L+ACA   + E G +VH Y++   F       +ALV MY+KCGN+ +A  VF
Sbjct: 303 NEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVF 362

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            ET + DL +WT++I G A +G+ ++AI+YF+ ++ SGT+PD   F+ +L+AC ++G V 
Sbjct: 363 KETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVD 422

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---------------------- 452
             L++F S++  Y +  +  H+  +++LL+R GQ  +                       
Sbjct: 423 KGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGG 482

Query: 453 ------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                  + +Q +   L +++P++P++YV L+NIYA  G W +VA++R  M  R + K P
Sbjct: 483 CRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKP 542

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G S+I +   VH F  G   H  +KEI+  L  +    +E+G++P T +VLH++++E KE
Sbjct: 543 GLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKE 602

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
           + L  HSEKLA+AFG+I T  GT IK+ K L  C DCH+ +K+ SKI+ R+I++RD+ RF
Sbjct: 603 QNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVDCHTAIKFISKITNRKIIVRDSNRF 662

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DG CSCRDYW
Sbjct: 663 HFFEDGHCSCRDYW 676



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 124/280 (44%), Gaps = 16/280 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IH  I+   L +   + + L        SI+ A  IFD    +++  +  +I    ++
Sbjct: 223 KEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQD 282

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +     F  +LR  +RPN  T+  V  + A+ +   LG+ +H  + + G +  +F  
Sbjct: 283 GRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAA 342

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G    A +VF ETP+ +    +  W  LI G ++ G   +A+  F ++ K
Sbjct: 343 SALVHMYSKCGNMVSAERVFKETPQPD----LFSWTSLIAGYAQNGQPDEAIRYFELLVK 398

Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA-----MINGFSQNGEAE 278
                   ++V ++      G + K  + F  + E+  ++ TA     +I+  +++G+ +
Sbjct: 399 SGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           +A  +  +M    ++ + F   S L  C   G L+   R 
Sbjct: 459 EAENIISKM---SMKPDKFLWASLLGGCRIHGNLKLAQRA 495


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 204/660 (30%), Positives = 340/660 (51%), Gaps = 75/660 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +++HAQ++     +  RI T L+S      S+D A  +FD    +++  FNV++ G A++
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             ++     F  M ++ ++PN++++  +     +   L+ G+ +H   + +G+  D  V 
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVA 297

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L  MY   G   GA +VFD      K   V+ W V+I G ++ G +  A  LF     
Sbjct: 298 TSLIRMYTTCGSIEGARRVFDNM----KVRDVVSWTVMIEGYAENGNIEDAFGLFATMQE 353

Query: 223 -GMMPKK--------------------------NVASW-------VSLIDGFMRKGDLKK 248
            G+ P +                          ++A +        +L+  + + G +K 
Sbjct: 354 EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKD 413

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F+ MP + VVSW+AMI  + +NG   +A   F  M  + +  +  T ++ L+AC  
Sbjct: 414 ARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGH 473

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL+ G+ ++      D      +G AL+ M AK G++E A  +F     +D++TW AM
Sbjct: 474 LGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAM 533

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G ++HG   +A+  F +M+     P+   F+ +L+AC  +G V     FF  +     
Sbjct: 534 IGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRG 593

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQNSF 460
           I P+VK +  +V+LL R G+  +                                ++ + 
Sbjct: 594 IVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAA 653

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            + L + P   + YV LS++YAA G W++VA+VR +M+ R I+K+ G ++IEV G VH F
Sbjct: 654 ERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTF 713

Query: 521 --EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAF 577
             E   H L  EI+++L  +M   + +GY+P T+ VLH++ E+ KEEA+  HSEKLA+A+
Sbjct: 714 VVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAY 773

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G++    GT I+I K L +C DCHS  K+ SK++ REI+ RD +RFH+FKDG CSC DYW
Sbjct: 774 GVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 184/391 (47%), Gaps = 43/391 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI   S+  ++  A  IFD    K +  +N LI G A+  H +   + F  M+   + P+
Sbjct: 98  LIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPS 157

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T+  V  + +S + L+ G+ +H  +V +G   D  +   L  MYV+ G    A +VFD
Sbjct: 158 IITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFD 217

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG----- 239
               ++ S     +NV++ G +K G   KA ELF  M     K N  S++S++DG     
Sbjct: 218 GLHIRDVST----FNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPE 273

Query: 240 ------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                                         +   G ++ A  +F+ M  + VVSWT MI 
Sbjct: 274 ALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIE 333

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+++NG  E A  +F  M + G++ +  T +  ++ACA    L     +H+ +    FG 
Sbjct: 334 GYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGT 393

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              + TALV MYAKCG I+ A  VF     +D+++W+AMI     +G   +A + F  M 
Sbjct: 394 DLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMK 453

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
            S  EPDG  ++ +L AC + G + + +  +
Sbjct: 454 RSNIEPDGVTYINLLNACGHLGALDVGMEIY 484



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 148/308 (48%), Gaps = 11/308 (3%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           N+    +LI  +   G++ +A ++F+ +  K VV+W A+I G++Q G  ++A A+F QM+
Sbjct: 91  NIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMV 150

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
           D G+  +  T +S L AC+    L  G  VH  +    F     IGTALV MY K G+++
Sbjct: 151 DEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMD 210

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF     +D+ T+  M+ G A  G +E+A + F +M   G +P+   FL+IL  CW
Sbjct: 211 DARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCW 270

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
                  AL +  ++         V    V  +L+ R+       + ++  F     +K 
Sbjct: 271 ----TPEALAWGKAVHAQCMNAGLVDDIRVATSLI-RMYTTCGSIEGARRVFD---NMKV 322

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA 528
           +   S+ ++   YA  G  +D   +   MQ   I+ D   +Y+ +           H  A
Sbjct: 323 RDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDR-ITYMHIMNACAISANLNH--A 379

Query: 529 KEIHSKLE 536
           +EIHS+++
Sbjct: 380 REIHSQVD 387



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/336 (23%), Positives = 141/336 (41%), Gaps = 17/336 (5%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + IT  HI++    S +    R+IH+Q+ +        ++T L+   +   +I  A  +F
Sbjct: 359 DRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVF 418

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++  ++ +I    EN +       F  M R ++ P+ +TY  +  +   L  L 
Sbjct: 419 DAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALD 478

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +G  ++   +K+ +     +   L  M  + G    A  +FD    ++    V+ WN +I
Sbjct: 479 VGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRD----VITWNAMI 534

Query: 207 NGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPE-KGV 261
            G S  G  R+A+ LF  M K+    N  ++V ++    R G + +    F  + E +G+
Sbjct: 535 GGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGI 594

Query: 262 VS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           V     +  M++   + GE ++A  +   M    V+       S L AC   G L+   R
Sbjct: 595 VPTVKLYGCMVDLLGRAGELDEAELLIKSM---PVKPTSSIWSSLLVACRIHGNLDVAER 651

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
                   D    GA+   L  MYA  G  E  + V
Sbjct: 652 AAERCLMID-PYDGAVYVQLSHMYAAAGMWENVAKV 686



 Score = 46.6 bits (109), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 49/247 (19%), Positives = 106/247 (42%), Gaps = 7/247 (2%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K S+   + +T  ++++      +     +I+ Q I  +L +   +   LI   + H S
Sbjct: 452 MKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGS 511

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  IFD    +++  +N +I G + + + +  +  F  ML+   RPN +T+  V  +
Sbjct: 512 VERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSA 571

Query: 139 VASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
            +    +  GR     +++  G+     +   + D+  + G+   A  +    P K  S 
Sbjct: 572 CSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSS 631

Query: 198 SVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
              +W+ L+  C   G L    +A E   M+   + A +V L   +   G  +   ++ +
Sbjct: 632 ---IWSSLLVACRIHGNLDVAERAAERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRK 688

Query: 255 QMPEKGV 261
            M  +G+
Sbjct: 689 VMESRGI 695


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  353 bits (906), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 215/660 (32%), Positives = 342/660 (51%), Gaps = 78/660 (11%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           ++AP ++    H     +T     SL+ + ++ ++  ++HA ++   L +   +  +L  
Sbjct: 8   SVAPASDSGGHH---GALTADRAASLLAACSTARRASELHAAVVRKGLDSDRAVAFRLQR 64

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           + +    +D++L++           +   I   +        ++    ML   + P   T
Sbjct: 65  AYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHT 124

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
              +S S+ +   LSLGR LH    K  +  D++V   L  MY + G    A  +FDE  
Sbjct: 125 ---LSASLPACRGLSLGRALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDE-- 179

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                                            MP  +V S  +++  +   G L  A  
Sbjct: 180 ---------------------------------MPDPHVVSVTAMLTCYANMGALDDARR 206

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF+ +P K  + W AMI+G++Q+G+  +AL +F +ML +    ++ TVV  LSA A++G 
Sbjct: 207 LFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGT 266

Query: 312 LEAGVRVHNYIS---CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +E+G  +H+Y+    C    ++  + TALVDMY KCG++E A  VF     KD++ W AM
Sbjct: 267 VESGKWLHSYVKNSRCVQLNVR--VATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAM 324

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G A+HG   +A++ F ++   G  P    F+ +L AC +SG V+   +FF SM  +Y 
Sbjct: 325 INGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYG 384

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------SFTKLLQLKPKHPSS------- 473
           I+P ++H+  +V+LL R G   + +   Q+         +  LL     H +        
Sbjct: 385 IDPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIA 444

Query: 474 -------------YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
                        Y+LLSNIYAA G+W++VARVR++M+   I+K+PG S IE++  V+ F
Sbjct: 445 DFLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEF 504

Query: 521 EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAF 577
            AG   H    EI++ L+ + A  +E G++P TE VLH++ E  KE+AL  HSEKLA+AF
Sbjct: 505 VAGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAF 564

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GLI + PG+TIKIVK L  C DCH+++K  SKI+ R+IV RD  RFH+F DG+C+C DYW
Sbjct: 565 GLISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/629 (34%), Positives = 331/629 (52%), Gaps = 77/629 (12%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A  +FD    ++  ++N +I G + NS+F+  I  FV ML + +  +  T   V  +V
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L    LG G+ CL  K G+  D +V   L  +Y + GK+     +FD+  + +    +
Sbjct: 225 AELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD----L 280

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFM-------------- 241
           + +N +I+G +       AV LF  +     + N ++ V LI  ++              
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 242 ---------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                                R  +++ A +LF++ PEK + SW AMI+G++QNG  ++A
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           +++F +M+   +  N  TV S LSACA++GAL  G  VH  I          + TALVDM
Sbjct: 401 ISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAKCG+I  A  +F    +K+++TW AMI G  +HG  ++A++ F +M+ SG  P G  F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------- 452
           L+IL AC +SG V      F SM  +Y  +P  +H+  +V++L R GQ +          
Sbjct: 520 LSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579

Query: 453 -----------------YQNSQNSFT---KLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                            ++N++ +     +L QL P++   YVLLSNIY+ +  +   A 
Sbjct: 580 LEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAAS 639

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           VR ++++R + K PG + IE++   + F +G   H  A  I   LE +    RE GY   
Sbjct: 640 VRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAE 699

Query: 551 T-EWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
           T    LH+++ EEKE  +  HSEKLA+AFGLI T PGT I+I+K L +C DCH+  K+ S
Sbjct: 700 TVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFIS 759

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           KI++R IV+RD  RFH+FK+G CSC DYW
Sbjct: 760 KITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 216/460 (46%), Gaps = 46/460 (10%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           ++L++++ +  QL QI AQ+ILH +       T+L        ++ +   +F+  +  +L
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDL 77

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
            +FNVLIRG ++N   +S I  +  + +  ++RP+  TY F   + + L    +G  LH 
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
             +  GV  + FV   + D+Y +  +   A KVFD  PE++     +LWN +I+G S+  
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD----TVLWNTMISGFSRNS 193

Query: 214 YLRKAVELF------------------------------GM-----MPKKNVASWVSLID 238
           Y   ++ +F                              GM       KK + S V ++ 
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 239 GFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           G +    + G   K   LF+Q+ +  ++S+ AMI+G++ N E E A+ +F ++L +G R 
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  T+V  +        L+    + N        L+ ++ TAL  +Y +   ++ A  +F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            E+ EK L +W AMI G   +G  ++AI  F++MM     P+     +IL+AC   G + 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALS 432

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           +   +   +     +E +V   T +V++ ++ G   +  Q
Sbjct: 433 IG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ 471



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 1   MKGHVFNRLT-TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+ FN  T +A+     + +S +  N+ T   +I +    N  +  R I    +   +
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
                ++T L +       + +A  +FD    K+L  +N +I G  +N      IS F  
Sbjct: 347 ILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQE 406

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   + PN +T   +  + A L  LS+G+ +H LI    +E + +V   L DMY + G 
Sbjct: 407 MMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGS 465

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVS 235
              A ++FD   +KN    V+ WN +I G    G+ ++A++LF  M +  +     +++S
Sbjct: 466 IVEARQLFDLMVDKN----VVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLS 521

Query: 236 LIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           ++      G + +  E+F  M      +     +  M++   + G+   AL    +M
Sbjct: 522 ILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/629 (34%), Positives = 331/629 (52%), Gaps = 77/629 (12%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A  +FD    ++  ++N +I G + NS+F+  I  FV ML + +  +  T   V  +V
Sbjct: 165 ELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAV 224

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L    LG G+ CL  K G+  D +V   L  +Y + GK+     +FD+  + +    +
Sbjct: 225 AELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPD----L 280

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFM-------------- 241
           + +N +I+G +       AV LF  +     + N ++ V LI  ++              
Sbjct: 281 ISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNL 340

Query: 242 ---------------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                                R  +++ A +LF++ PEK + SW AMI+G++QNG  ++A
Sbjct: 341 SLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRA 400

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           +++F +M+   +  N  TV S LSACA++GAL  G  VH  I          + TALVDM
Sbjct: 401 ISLFQEMMPQ-LSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAKCG+I  A  +F    +K+++TW AMI G  +HG  ++A++ F +M+ SG  P G  F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------- 452
           L+IL AC +SG V      F SM  +Y  +P  +H+  +V++L R GQ +          
Sbjct: 520 LSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMP 579

Query: 453 -----------------YQNSQNSFT---KLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                            ++N++ +     +L QL P++   YVLLSNIY+ +  +   A 
Sbjct: 580 LEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAAS 639

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           VR ++++R + K PG + IE++   + F +G   H  A  I   LE +    RE GY   
Sbjct: 640 VRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKLTGKMREAGYQAE 699

Query: 551 T-EWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
           T    LH+++ EEKE  +  HSEKLA+AFGLI T PGT I+I+K L +C DCH+  K+ S
Sbjct: 700 TVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRVCLDCHTATKFIS 759

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           KI++R IV+RD  RFH+FK+G CSC DYW
Sbjct: 760 KITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/460 (25%), Positives = 216/460 (46%), Gaps = 46/460 (10%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           ++L++++ +  QL QI AQ+ILH +       T+L        ++ +   +F+  +  +L
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDL 77

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
            +FNVLIRG ++N   +S I  +  + + + +RP+  TY F   + + L    +G  LH 
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHA 137

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
             +  GV  + FV   + D+Y +  +   A KVFD  PE++     +LWN +I+G S+  
Sbjct: 138 HSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERD----TVLWNTMISGFSRNS 193

Query: 214 YLRKAVELF------------------------------GM-----MPKKNVASWVSLID 238
           Y   ++ +F                              GM       KK + S V ++ 
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLT 253

Query: 239 GFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           G +    + G   K   LF+Q+ +  ++S+ AMI+G++ N E E A+ +F ++L +G R 
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRV 313

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  T+V  +        L+    + N        L+ ++ TAL  +Y +   ++ A  +F
Sbjct: 314 NSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLF 373

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            E+ EK L +W AMI G   +G  ++AI  F++MM     P+     +IL+AC   G + 
Sbjct: 374 DESPEKSLASWNAMISGYTQNGLTDRAISLFQEMM-PQLSPNPVTVTSILSACAQLGALS 432

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           +   +   +     +E +V   T +V++ ++ G   +  Q
Sbjct: 433 IG-KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQ 471



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 15/297 (5%)

Query: 1   MKGHVFNRLT-TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+ FN  T +A+     + +S +  N+ T   +I +    N  +  R I    +   +
Sbjct: 287 ISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGI 346

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
                ++T L +       + +A  +FD    K+L  +N +I G  +N      IS F  
Sbjct: 347 ILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQE 406

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   + PN +T   +  + A L  LS+G+ +H LI    +E + +V   L DMY + G 
Sbjct: 407 MMP-QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGS 465

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVS 235
              A ++FD   +KN    V+ WN +I G    G+ ++A++LF  M +  +     +++S
Sbjct: 466 IVEARQLFDLMVDKN----VVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLS 521

Query: 236 LIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           ++      G + +  E+F  M      +     +  M++   + G+   AL    +M
Sbjct: 522 ILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERM 578


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  353 bits (906), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 206/634 (32%), Positives = 334/634 (52%), Gaps = 85/634 (13%)

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           ++F+ +  K N+  +N +I  LA +      +  F  M +LS++PNR T+P   KS ++L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             L  GR  H   +  G E D FV   L DMY + G+ R A  +FDE   +N    ++ W
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRN----IVSW 221

Query: 203 NVLING-------------------------------------------CSKIGYLRKAV 219
             +I G                                           CS++       
Sbjct: 222 TSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITE 281

Query: 220 ELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
            + G + K+    ++    +L+D + + G+L  +  +F+ M E+ V+SW ++I  ++QNG
Sbjct: 282 GVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNG 341

Query: 276 EAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            + +++ +F +M+ D  +  N  T+ + L ACA  G+   G  +H+ +          +G
Sbjct: 342 MSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVG 401

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           T+++DMY KCG +E A   F   +EK++ +W+AM+ G  +HG  ++A++ F +M  +G +
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVK 461

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY- 453
           P+   F+++L AC ++G ++   ++F +M  ++ +EP V+H+  +V+LL R G   + + 
Sbjct: 462 PNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFD 521

Query: 454 ---------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                                         + S  KL +L PK+   YVLLSNIYA  GR
Sbjct: 522 LIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGR 581

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGARE 544
           W+DV R+R LM+   + K PG+S +++ G VH F  G   H   ++I+  LE +    +E
Sbjct: 582 WEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQE 641

Query: 545 QGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY+P    VLH++  EEKE  L  HSEKLA+AFG++ T PGTTI I+K L +CGDCH+ 
Sbjct: 642 VGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTA 701

Query: 604 MKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K+ SKI  REIV+RD+ RFH+F+DG CSC DYW
Sbjct: 702 IKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 170/379 (44%), Gaps = 56/379 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ H Q ++        +++ L+   S    +  A ++FD  + +N+  +  +I G  +N
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 108 SHFQSCISHF-VFMLRLS-------VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
                 +  F  F++  S       V  + +    V  + + +S  S+  G+H  ++K G
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
            E D  V   L D Y + G+   + +VFD   E++    V+ WN +I   ++ G   +++
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERD----VISWNSIIAVYAQNGMSTESM 347

Query: 220 ELFGMMPKK----------------------------------------NVASWVSLIDG 239
           E+F  M K                                         NV    S+ID 
Sbjct: 348 EIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDM 407

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + + G ++ A + F++M EK V SW+AM+ G+  +G A++AL +F++M  AGV+ N  T 
Sbjct: 408 YCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITF 467

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGE 356
           VS L+AC+  G LE G      +S ++F ++  +     +VD+  + G + EA  L+ G 
Sbjct: 468 VSVLAACSHAGLLEEGWHWFKAMS-HEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 357 TKEKDLLTWTAMIWGLAIH 375
               D + W A++    +H
Sbjct: 527 KLRPDFVVWGALLGACRMH 545



 Score = 47.0 bits (110), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 19/254 (7%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K      N +T + ++     S S +  + IH Q+I   L ++  + T +I        
Sbjct: 354 VKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGK 413

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A   FD    KN+  ++ ++ G   + H +  +  F  M    V+PN +T+  V  +
Sbjct: 414 VEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 473

Query: 139 VASLSLLSLG----RGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
            +   LL  G    + + H   V+ GVE       H   M   LG+     + FD     
Sbjct: 474 CSHAGLLEEGWHWFKAMSHEFDVEPGVE-------HYGCMVDLLGRAGYLKEAFDLIKGM 526

Query: 194 NKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
                 ++W  L+  C       +G +  A +LF + P KN   +V L + +   G  + 
Sbjct: 527 KLRPDFVVWGALLGACRMHKNVDLGEI-SARKLFELDP-KNCGYYVLLSNIYADAGRWED 584

Query: 249 AGELFEQMPEKGVV 262
              +   M   G+V
Sbjct: 585 VERMRILMKNSGLV 598


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/681 (30%), Positives = 359/681 (52%), Gaps = 75/681 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N    T ++ L+ S +       +HA +      A + + T LI + S+  ++D A  +F
Sbjct: 135 NPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVF 194

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K++  +  ++   AEN  ++  +  F  M  +  +PN  T     KS   L   +
Sbjct: 195 DDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFN 254

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +G+ +H   +K   ++D FV + L ++Y + G+   A ++F+E P+ +    ++ W+++I
Sbjct: 255 VGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTD----LIPWSLMI 310

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV--------------ASWVSL---------------- 236
              ++    ++A++LF  M + +V              AS VSL                
Sbjct: 311 ARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLN 370

Query: 237 ---------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                    +D + + G+++ + +LFE++P++  V+W  +I G+ Q G+ E+A+ +F  M
Sbjct: 371 SNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHM 430

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           L+  ++  + T  S L A A + ALE G+++H+      +     +  +L+DMYAKCG I
Sbjct: 431 LEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRI 490

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             A L F +  ++D ++W AMI G ++HG   +A+  F  M ++  +P+   F+ +L+AC
Sbjct: 491 NDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSAC 550

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ--------GYQNSQNS 459
             +G +      F+SM  DY I+P ++H+T +V LL R+G+  +         YQ S   
Sbjct: 551 SNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMV 610

Query: 460 FTKL--------------------LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           +  L                    L+++P   +++VLLSN+YA  GRW +VA VR  MQ+
Sbjct: 611 WRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQK 670

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + ++K+PG S++E  G VH F  G   H   K I + LE +    R+ GY+P    VL +
Sbjct: 671 KKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLD 730

Query: 558 IK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++ +EKE  L  HSE+LALA+GLI+T    +I+I+K L IC DCH++MK  SK+ QREIV
Sbjct: 731 VQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIV 790

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+F+ G CSC DYW
Sbjct: 791 IRDINRFHHFRHGVCSCGDYW 811



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 172/386 (44%), Gaps = 43/386 (11%)

Query: 58  NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
           +LFA + +    + S SL      A  +FD     N   F  L +G + +  F   +   
Sbjct: 69  DLFAQNILLNFYVQSNSLQD----ASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFI 124

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
           + + +     N   +  + K + S+ L  L   LH  + K G   DAFV   L D Y   
Sbjct: 125 LRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVR 184

Query: 178 GKTRGAFKVFDETPEKNK----------------SESVLLWNVL------INGCSKIGYL 215
           G    A  VFD+   K+                  ES+ L+N +       N  +  G L
Sbjct: 185 GNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGAL 244

Query: 216 RKAVELFGMMPKKNVASW-------------VSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           +  + L      K+V                ++L++ + + G++  A  LFE+MP+  ++
Sbjct: 245 KSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLI 304

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
            W+ MI  ++Q+  +++AL +F +M    V  N+FT  S L ACA   +L+ G ++H+ +
Sbjct: 305 PWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCV 364

Query: 323 SCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
               FGL     +  A++D+YAKCG IE +  +F E  +++ +TW  +I G    G  E+
Sbjct: 365 L--KFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGER 422

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTA 406
           A+  F  M+    +P    + ++L A
Sbjct: 423 AMNLFTHMLEHDMQPTEVTYSSVLRA 448



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 47/310 (15%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ LHC I+K G   D F +  L + YVQ    + A K+FDE P+ N    V     L  
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFV----TLAQ 109

Query: 208 GCSKIGYLRKAVE-------------------LFGMMPKKNVA--SW------------- 233
           G S+     +A+                    L  ++   ++A   W             
Sbjct: 110 GYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHA 169

Query: 234 -----VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 +LID +  +G++  A  +F+ +  K +VSWT M+  +++N   E++L +F QM 
Sbjct: 170 DAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMR 229

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGN 346
             G + N+FT+  AL +C  + A   G  VH      C D  L   +G AL+++YAK G 
Sbjct: 230 IMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDL--FVGIALLELYAKSGE 287

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I  A  +F E  + DL+ W+ MI   A   R ++A+  F +M  +   P+   F ++L A
Sbjct: 288 IIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQA 347

Query: 407 CWYSGQVKLA 416
           C  S  + L 
Sbjct: 348 CASSVSLDLG 357


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 224/656 (34%), Positives = 349/656 (53%), Gaps = 79/656 (12%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           +S KP ++   + ++SLI S  S +Q++Q HAQ+I   L +      +L+  A+   S+ 
Sbjct: 6   TSAKPFHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLKLAAC-ASLS 64

Query: 81  YALSIFDHFTPKNLHIFNVLIRG--LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           YA  +FD     +L I+N +I+   L+ +S   S I        L + PNR ++ F    
Sbjct: 65  YAHKLFDQIPQPDLFIYNTMIKAHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSFVF---- 120

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
               +  + G GL       GV+    VR+H     V++G     F V            
Sbjct: 121 ----AFSACGNGL-------GVQEGEQVRIHA----VKVGLENNVFVV------------ 153

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
               N LI    K G + ++ ++F     +++ SW +LI  ++  G++  A ELF+ M E
Sbjct: 154 ----NALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRE 209

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + VVSW+ +I G+ Q G   +AL  F +ML  G + N++T+VSAL+AC+ + AL+ G  +
Sbjct: 210 RDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWI 269

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLAIHGR 377
           H YI   +  +   +  +++DMYAKCG IE+AS VF E K K  +  W AMI G A+HG 
Sbjct: 270 HAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGM 329

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
             +AI  F++M      P+   F+A+L AC +   V+    +F  M  DY I P ++H+ 
Sbjct: 330 PNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYG 389

Query: 438 VVVNLLSRVGQDSQG-------------------------YQNSQNSFT--KLLQ-LKPK 469
            +V+LLSR G   +                          Y++ +  +   ++++ + P 
Sbjct: 390 CMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPN 449

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD----PGWSYIEVNGHVHRFEAG-- 523
           H   +VLLSNIY+  GRW +    R L ++  I +D    PG S IE+ G  H+F  G  
Sbjct: 450 HIGCHVLLSNIYSTSGRWNEA---RILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQ 506

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQ 581
            H  ++EI+S L+++    +  GY+P    +LH+I  +E+KE AL  HSEKLA+AFGL+ 
Sbjct: 507 SHPQSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMN 566

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T  GT I+IVK L +CGDCH   K+ SK+  R I++RD TR+H+F+DG CSC+DYW
Sbjct: 567 TANGTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 211/702 (30%), Positives = 358/702 (50%), Gaps = 99/702 (14%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL-ISSASLHKSIDYALSIFDHFTPK 92
           + S + S+ S   L+Q+HAQI+   L  S+ +  +L ISS +L  S+DYALS+F+     
Sbjct: 26  LFSALSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKP 85

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
             H+ N  +R L+ +   +  +  +  M    +  +R ++P + K+++ +  L  G  +H
Sbjct: 86  ETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGLEIH 145

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKT-------------------------------R 181
            L  K G + D FV+  L  MY   G+                                 
Sbjct: 146 GLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFN 205

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK------------------------ 217
            A  +F+E    N     ++ + +++ C + G L                          
Sbjct: 206 DALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALV 265

Query: 218 -----------AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                      A+ LF  M  KN+ +  +++ G+ + G ++ A  +F QM +K +V W+A
Sbjct: 266 TMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSA 325

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI+G++++   ++AL +F +M   G++ +  T++S ++ACA +GAL+    +H ++  N 
Sbjct: 326 MISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNG 385

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           FG    I  AL++MYAKCG++E A  +F +   K++++WT MI   A+HG    A+++F 
Sbjct: 386 FGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALRFFH 445

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M     EP+G  F+ +L AC ++G V+     F SM  ++ I P   H+  +V+L  R 
Sbjct: 446 QMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRA 505

Query: 447 GQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLS 478
               +  +  +                             +  +LL+L P H  ++V LS
Sbjct: 506 NLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHVFLS 565

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIYA   RW+DV +VR LM+ + I K+ G S  E+N  +H F      HK A EI+ KL 
Sbjct: 566 NIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYEKLY 625

Query: 537 DIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLT 595
           ++++  +  GY P T  +L +++EE+++ +   HSEKLAL +GL++   G+ I+I+K L 
Sbjct: 626 EVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIKNLR 685

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +C DCH+ +K ASK+ +REIV+RD TRFH++KDG CSC+DYW
Sbjct: 686 VCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 214/629 (34%), Positives = 342/629 (54%), Gaps = 81/629 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A+++F      ++  +N +I G   +      +     M    V P+  T     K+ A+
Sbjct: 242 AIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAA 301

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           + L+ LGR LH  ++K  +E D+FV V L DMY + G  + A  VFD  P K+    V++
Sbjct: 302 IGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKD----VIV 357

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------------ 231
           WN +I+G S  GY  +A+ LF  M K+ +                               
Sbjct: 358 WNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISI 417

Query: 232 -------SWV--SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                   +V  SL+D + +   L+ A ++FE  P + +V++T+MI  +SQ G  E+AL 
Sbjct: 418 KSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALK 477

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAI--GTALVD 339
           M+ +M D  ++ + F   S  +ACA + A E G ++H ++  C   GL   +  G +LV+
Sbjct: 478 MYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC---GLLSDVFAGNSLVN 534

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAKCG+I+ AS +F E   + +++W+AMI GLA HG   +A+Q F +M+ +G  P+   
Sbjct: 535 MYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHIT 594

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------- 452
            +++L+AC ++G V  A  FF  M   + I P+ +H+  +V++L RVG+  +        
Sbjct: 595 LVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEM 654

Query: 453 -YQNS--------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
            +Q S                    +++   LL L+P+   +++LL+NIYA+ G W +VA
Sbjct: 655 PFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILLANIYASTGMWDNVA 714

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR  M+   +KK+PG S+IE+   V+ F  G   H  +KEI+ KL+D+       GY+P
Sbjct: 715 KVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKLDDLRERLTSAGYVP 774

Query: 550 GTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
             E  LH++++ EKE+ L  HSEKLA+AFGLI T PG  I++ K L +C DCH+  K+ S
Sbjct: 775 MIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNLRVCIDCHTAFKFIS 834

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K++ REI++RD  RFH+F+DG+CSC DYW
Sbjct: 835 KVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 145/329 (44%), Gaps = 47/329 (14%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   + PN  +   V  + A L   + G  +H  ++K G + D F    L DMY + G 
Sbjct: 179 MISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGC 238

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGC-------------SKIGYLRKAVELF---- 222
              A  VF E P+ +    ++ WN +I GC              K+G  R A  +F    
Sbjct: 239 PEAAIAVFYEIPKPD----IVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSS 294

Query: 223 ------------------------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
                                    M P   V   V LID + + G L+ A  +F+ MP 
Sbjct: 295 ALKACAAIGLVKLGRQLHSALMKMDMEPDSFVG--VGLIDMYSKCGLLQDARMVFDLMPX 352

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K V+ W ++I+G+S  G   +A+++F  M   G+  N  T+ + L + A   A     +V
Sbjct: 353 KDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQV 412

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H     + +   G +  +L+D Y KC  +E A+ VF     +DL+ +T+MI   + +G  
Sbjct: 413 HTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLG 472

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E+A++ + +M     +PD  +F ++  AC
Sbjct: 473 EEALKMYLRMQDRDIKPDAFIFSSLFNAC 501



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 101/426 (23%), Positives = 180/426 (42%), Gaps = 45/426 (10%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           + D   P +L  ++ LI G  +N   +  +  +  M  L  + N  T+  V K  +    
Sbjct: 105 VIDSSEP-DLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRN 163

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L LG+ +H              RV L    +  G +   F +                + 
Sbjct: 164 LELGKQIH--------------RVALVTEMISTGISPNEFSL----------------ST 193

Query: 205 LINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++N C+ +      +++ G + K     +  S  +L+D + + G  + A  +F ++P+  
Sbjct: 194 VLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPD 253

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW A+I G   + + + AL +  +M    V  + FT+ SAL ACA +G ++ G ++H+
Sbjct: 254 IVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHS 313

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            +   D      +G  L+DMY+KCG ++ A +VF     KD++ W ++I G +  G   +
Sbjct: 314 ALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIE 373

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+  F  M   G E + T    IL +   S       N F        I+   ++   V 
Sbjct: 374 AMSLFTNMYKEGLEFNQTTLSTILKSTAGSQA-----NGFCEQVHTISIKSGYQYDGYVA 428

Query: 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP-SSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           N L     DS G         K+ ++ P     +Y  +   Y+  G  ++  ++   MQ 
Sbjct: 429 NSL----LDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQD 484

Query: 500 RSIKKD 505
           R IK D
Sbjct: 485 RDIKPD 490



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/340 (25%), Positives = 156/340 (45%), Gaps = 42/340 (12%)

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
           F+L  S  P+ ++YP +     +   +S G  +H  I++ G+       V+L   Y +  
Sbjct: 40  FILDSSSNPSSISYPKLLLQFTASKDVSSGMAIHARIIRLGLLGLRNRLVNL---YSKCQ 96

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWV 234
             R A K+  ++ E +    ++ W+ LI+G  + G   +A+    E++ +  K N  ++ 
Sbjct: 97  CFRVARKLVIDSSEPD----LVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFS 152

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           S++ G      L +  EL +Q+    +V+                      +M+  G+  
Sbjct: 153 SVLKGC----SLTRNLELGKQIHRVALVT----------------------EMISTGISP 186

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N+F++ + L+ACA +     G++VH Y+    +        AL+DMYAK G  EAA  VF
Sbjct: 187 NEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVF 246

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            E  + D+++W A+I G  +H + + A++   KM      P      + L AC   G VK
Sbjct: 247 YEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVK 306

Query: 415 LALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVG--QDSQ 451
           L      + M+ D  +EP       ++++ S+ G  QD++
Sbjct: 307 LGRQLHSALMKMD--MEPDSFVGVGLIDMYSKCGLLQDAR 344



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/321 (19%), Positives = 132/321 (41%), Gaps = 28/321 (8%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A++  TN+       N  T + I+     S +     Q+H   I         +   L+ 
Sbjct: 374 AMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLD 433

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           S      ++ A  +F+    ++L  +  +I   ++    +  +  ++ M    ++P+   
Sbjct: 434 SYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFI 493

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  +  + A+LS    G+ +H  ++K G+  D F    L +MY + G    A  +F+E  
Sbjct: 494 FSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEIS 553

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLK 247
            +     ++ W+ +I G ++ G+ RKA++LF  M K  +     + VS++      G + 
Sbjct: 554 WRG----IVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVT 609

Query: 248 KAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           +A   F  M +   ++     +  M++   + G  ++A+ +  +M               
Sbjct: 610 EARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEM--------------P 655

Query: 303 LSACAKV-GALEAGVRVHNYI 322
             A A V GAL    R+H  I
Sbjct: 656 FQASAAVWGALLGAARIHKNI 676


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 220/683 (32%), Positives = 342/683 (50%), Gaps = 79/683 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T T ++    +S + KQ + IH+ II      +  I   L+   S       A+ +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                 ++ +++ LI  L +    +  I  F  M      PN+ T   +  +  +   L 
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  + K G E D  V   L  MY++ G      K+++   +++    ++ WN  +
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRD----LISWNAYL 488

Query: 207 NGCSKIGYLRKAVELF------GMMPKKNVASWVS------------------------- 235
           +G    G   + + +F      G +P  N+ +++S                         
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEGFIP--NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ 546

Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                     LID + +   L+ A   F ++  + + +WT +I  ++Q  + EKAL  F 
Sbjct: 547 LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFR 606

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QM   GV+ N+FT+   LS C+ + +LE G ++H+ +  +       +G+ALVDMYAKCG
Sbjct: 607 QMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCG 666

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +E A  +F     +D + W  +I G A +G+  +A+  F+ M+  G  PDG  F  IL+
Sbjct: 667 CMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILS 726

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS------QGYQNSQNS 459
           AC + G V+     F+SM  D+ I P+V H   +V++L RVG+        Q  Q SQN+
Sbjct: 727 ACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNA 786

Query: 460 F----------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                                   KL +L+P+  SSY+LLSNI+A EGRW DV RVR+LM
Sbjct: 787 LIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLM 846

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
             + +KK+PG S++E NG VH F +    H   +EIH KL+++        Y+P TE+VL
Sbjct: 847 SSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVL 906

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           HN+ E EK+E L  HSE+LAL F LI T+    I+I K L IC DCH +MK+ S I+ +E
Sbjct: 907 HNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQE 966

Query: 615 IVLRDT-RFHYFKDGTCSCRDYW 636
           IV+RD  RFH+FK+G CSC D+W
Sbjct: 967 IVVRDVRRFHHFKNGACSCNDFW 989



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 180/399 (45%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HAQ     L     + + L+   +    I+ A  +F     +N   +NVL+ G A+ 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M+ L V+ N  T   V K  A+   L  G+ +H LI+K G E + F+ 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
             L DMY + G    A  VF       K   +++W+ LI    + G   ++++LF +M  
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTI----KKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 226 ----PKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
               P +                                 +VA   +L+  +M+ G +  
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD 468

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
             +L+E M ++ ++SW A ++G    G  ++ L +F+ ML+ G   N +T +S L +C+ 
Sbjct: 469 GTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC 528

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +  +  G +VH +I  N       + TAL+DMYAKC  +E A + F     +DL TWT +
Sbjct: 529 LFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVI 588

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I   A   + E+A+ YF++M   G +P+       L+ C
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGC 627



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 170/399 (42%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH  I+   +   S +   L++  +  +   YA  +      +++  +  LI+GL   
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAE 191

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M    + PN  T     K+ +    L LG+ +H    K G+  D FV 
Sbjct: 192 GFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVG 251

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L D+Y + G+   A K+F   PE+N     + WNVL+NG ++ G +   ++LF  M +
Sbjct: 252 SALVDLYAKCGEIELASKMFIGMPEQND----VTWNVLLNGYAQRGDVTGVLKLFCSMME 307

Query: 228 KNVAS---------------------------------------WVSLIDGFMRKGDLKK 248
            +V                                            L+D + + G    
Sbjct: 308 LDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID 367

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +F+ + +  +V W+A+I    Q G++E+++ +F  M       N +T+ S LSA   
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            G L+ G  +H  +    F    A+  ALV MY K G +   + ++    ++DL++W A 
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + GL   G Y++ +  F  M+  G  P+   F++IL +C
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 152/322 (47%), Gaps = 43/322 (13%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  + +  AS   L + + +H LIVK  +  D+ + V L ++Y +   +  A  V  + P
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----------------- 228
           +++    V+ W  LI G    G+   ++ LF      G+MP +                 
Sbjct: 175 DRD----VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALD 230

Query: 229 ----------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                           ++    +L+D + + G+++ A ++F  MPE+  V+W  ++NG++
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q G+    L +F  M++  V+ N+FT+ + L  CA    L+ G  +H+ I    +     
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           IG  LVDMY+KCG    A  VF   K+ D++ W+A+I  L   G+ E++I+ F  M    
Sbjct: 351 IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 393 TEPDGTVFLAILTACWYSGQVK 414
           T P+     ++L+A   +G ++
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQ 432


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  353 bits (905), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/587 (35%), Positives = 303/587 (51%), Gaps = 67/587 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IFD    KNL ++N ++     +      +     ML+   RP+++T      + A 
Sbjct: 285 ARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQ 344

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  LS+G+  H  ++++G+E    +   + DMY++ GK   A KVF+             
Sbjct: 345 LGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEH------------ 392

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                                  MP K V +W SLI G +R GD++ A  +F++M E+ +
Sbjct: 393 -----------------------MPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDL 429

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW  MI    Q    E+A+ +F +M + G+  +  T+V   SAC  +GAL+    V  Y
Sbjct: 430 VSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTY 489

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  ND  +   +GTALVDM+++CG+  +A  VF   +++D+  WTA I  +A+ G  E A
Sbjct: 490 IEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGA 549

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           I+ F +M+    +PD  VF+A+LTAC + G V      F SM   + I P + H+  +V+
Sbjct: 550 IELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIVHYGCMVD 609

Query: 442 LLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSS 473
           LL R G   +     Q+                            +  KL QL P+    
Sbjct: 610 LLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYAAEKLTQLAPERVGI 669

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHS 533
           +VLLSNIYA+ G+W DVARVR  M+ + ++K PG S IEV G +H F +G    A+  H 
Sbjct: 670 HVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHEFTSGDESHAENTHI 729

Query: 534 --KLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
              LE+I     E GY+P T  VL ++ E EKE  L  HSEKLA+A+GLI T  G  I++
Sbjct: 730 GLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMAYGLITTGQGIPIRV 789

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           VK L +C DCHS  K  SK+  REI +RD  R+H+FK+G CSCRDYW
Sbjct: 790 VKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDYW 836



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 152/578 (26%), Positives = 260/578 (44%), Gaps = 95/578 (16%)

Query: 9   LTTAIAPTTN--IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA---SS 63
           + T + P++   + +S K +N IT      L+ +  + K+L+Q+H  ++   L     +S
Sbjct: 1   MATTLFPSSTLLVPASLKEANPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPAS 60

Query: 64  RITTQLISSASLH--KSIDYALSIF--DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            +   + SS  +   +S+DYA + F  D     +L ++N LIRG A        I  +V 
Sbjct: 61  NLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQ 120

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           ML + + P++ T+PF+  + + +  LS G  +H  ++K G+E D FV   L   Y + GK
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGK 180

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK------ 227
                K+FD   E+N    V+ W  LING S     ++AV LF      G+ P       
Sbjct: 181 VDLGRKLFDGMLERN----VVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVC 236

Query: 228 --------------KNVASWVS-------------LIDGFMRKGDLKKAGELFEQMPEKG 260
                         K V S++S             L+D +M+ GD+  A ++F++   K 
Sbjct: 237 VISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKN 296

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V +  +++ +  +  A   L +  +ML  G R +  T++S ++ACA++G L  G   H 
Sbjct: 297 LVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHA 356

Query: 321 YISCNDFGLKG--AIGTALVDMYAKCGNIEAASLV------------------------- 353
           Y+  N  GL+G   I  A++DMY KCG  EAA  V                         
Sbjct: 357 YVLRN--GLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDM 414

Query: 354 ------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                 F E  E+DL++W  MI  L     +E+AI+ F++M   G   D    + I +AC
Sbjct: 415 ELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGIASAC 474

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
            Y G + LA  +  +      I   ++  T +V++ SR G  S    ++ + F +   ++
Sbjct: 475 GYLGALDLA-KWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPS----SAMHVFKR---ME 526

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            +  S++     + A EG  +    +   M  + +K D
Sbjct: 527 KRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPD 564


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  352 bits (904), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 221/700 (31%), Positives = 354/700 (50%), Gaps = 77/700 (11%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           L  A+A    + S+  P    T T ++ L  +       R +HAQ+    + + +   T 
Sbjct: 40  LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRP 127
           L +  +  +    A  +FD    ++   +N L+ G A N   +  +   V M      RP
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           + +T   V  + A+   L+  R  H   ++SG+E    V   + D Y + G  R A  VF
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------- 228
           D  P KN     + WN +I+G ++ G  R+A+ LF  M ++                   
Sbjct: 220 DWMPTKNS----VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 229 --------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                               NV+   +LI  + +   +  A  +F+++  +  VSW AMI
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G +QNG +E A+ +F +M    V+ + FT+VS + A A +        +H Y       
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD 395

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               + TAL+DMYAKCG +  A ++F   +E+ ++TW AMI G   HG  + A++ F++M
Sbjct: 396 QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEM 455

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  P+ T FL++L+AC ++G V     +F SM+ DY +EP ++H+  +V+LL R G+
Sbjct: 456 KSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515

Query: 449 DSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNI 480
             + +                            + ++ S  K+ +L P+    +VLL+NI
Sbjct: 516 LDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANI 575

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YA    WKDVARVRT M++  ++K PGWS I++   +H F +G   H+ AKEI+S+L  +
Sbjct: 576 YANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKL 635

Query: 539 MAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
           +   +  GY+P T+ + H+++++ K + L  HSEKLA+AFGLI+T PGTTI+I K L +C
Sbjct: 636 IEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVC 694

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+  K  S ++ REI++RD  RFH+FKDG CSC DYW
Sbjct: 695 NDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 173/348 (49%), Gaps = 48/348 (13%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           +R  A  S   + ++ FV M      P   T+  + K  A+   L+ GR +H  +   G+
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           + +A     LA+MY +  +   A +VFD  P +++    + WN L+ G ++ G  R A+E
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDR----VAWNALVAGYARNGLARMAME 146

Query: 221 LFGMMPKK------------------------------------------NVASWVSLID 238
           +   M ++                                          NVA+  +++D
Sbjct: 147 MVVRMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVAT--AILD 204

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + + GD++ A  +F+ MP K  VSW AMI+G++QNG++ +ALA+F +M++ GV   D +
Sbjct: 205 AYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVS 264

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           V++AL AC ++G L+ G+RVH  +         ++  AL+ MY+KC  ++ AS VF E  
Sbjct: 265 VLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELD 324

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            +  ++W AMI G A +G  E A++ F +M     +PD    ++++ A
Sbjct: 325 RRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/649 (32%), Positives = 342/649 (52%), Gaps = 79/649 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID-----YAL 83
           + E  ++S++H      Q++Q+HA II + L   S + T+LI    +   +D     Y L
Sbjct: 40  LLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIR---MLTKVDVPMGSYPL 96

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F      N  ++  +IRG A         + +  M R  V P   T+  + K+  +  
Sbjct: 97  LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156

Query: 144 LLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
            + LG+ +H   I+  G   D +V   + D+YV                           
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYV--------------------------- 189

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                   K G+L  A ++F  M +++V SW  LI  + + GD++ A  LF+ +P K +V
Sbjct: 190 --------KCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMV 241

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +WTAM+ G++QNG  ++AL  F +M D G+  ++ T+   +SACA++GA++    + +  
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIA 301

Query: 323 SCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
             + FG  G   +G+AL+DMY+KCG+ + A  VF   KE+++ ++++MI G A+HGR   
Sbjct: 302 ERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHS 361

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+Q F  M+ +   P+   F+ IL+AC ++G V+     F  M   + + PS  H+  +V
Sbjct: 362 ALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMV 421

Query: 441 NLLSRVG--------------QDSQGYQNS--------------QNSFTKLLQLKPKHPS 472
           +LL R G              + + G   +              Q +  +L +L+P    
Sbjct: 422 DLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIG 481

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAGG--HKLAK 529
           +Y+LLSNIYA+ GRW++V+++R +++ +  KK+PG S+ E  NG +H F AG   H  + 
Sbjct: 482 NYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSS 541

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           EI   L+ ++   R  GY P      +++  +EKE  L  HSEKLALA+GL+ T  G TI
Sbjct: 542 EIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTI 601

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           KI+K + IC DCH++M  AS+I+ REI++RD  RFH+F +GTCSC ++W
Sbjct: 602 KIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 211/655 (32%), Positives = 333/655 (50%), Gaps = 79/655 (12%)

Query: 48  RQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           R   AQ +   +   + I+   L+S    +  I  A  +FD    +N+  +  ++RG  +
Sbjct: 62  RPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQ 121

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-VKSGVEYDAF 165
               +  I     +       N +++  +   +     +   R L  +I VK     D  
Sbjct: 122 ----EGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVK-----DVV 172

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
              ++       G+   A ++FDE P++N    V+ W  +I+G +    +  A +LF +M
Sbjct: 173 ASTNMIGGLCSEGRLSEAREIFDEMPQRN----VVAWTSMISGYAMNNKVDVARKLFEVM 228

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA----- 280
           P KN  +W +++ G+ R G + +A ELF+ MP K V +   MI GF  NGE  KA     
Sbjct: 229 PDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAACNGMIMGFGLNGEVGKARWVFD 288

Query: 281 --------------------------LAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
                                     LA+F  M   GVR N  +++S LS C  + +L+ 
Sbjct: 289 QMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDH 348

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G +VH+ +  + F L   + + L+ MY KCG++     VF     KD++ W ++I G A 
Sbjct: 349 GRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQ 408

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           HG  E+A++ F +M  SG  PD   F+ +L+AC Y+G+VK  L  F+SM+  Y ++   +
Sbjct: 409 HGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTE 468

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQL 466
           H+  +V+LL R G+ ++     +N                            +  KLLQL
Sbjct: 469 HYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQL 528

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-- 524
           +P     Y+LLSN+YA++ RWKDVA +R  M+ R++ K PG S+IEV+  VH F  GG  
Sbjct: 529 EPSSAGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSA 588

Query: 525 -HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQT 582
            H   + I  KLE + A  RE GY P   +V+H++ EE K  +L  HSEK+A+A+GL++ 
Sbjct: 589 SHPEHEMIMKKLEKLGASLREAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKV 648

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             G  I+++K L +CGDCHS +K  ++++ REI+LRD  RFH+FKDG CSCRD+W
Sbjct: 649 PVGKPIRVMKNLRVCGDCHSAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/366 (24%), Positives = 180/366 (49%), Gaps = 39/366 (10%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           + +LG+   A  +FD+     +S++V  WN ++ G        +A +LF  MP++N  SW
Sbjct: 26  FARLGQIDRARNIFDDL----QSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISW 81

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             L+ G+++ G + +A ++F++MPE+ VVSWT+M+ G+ Q G  ++A  +F++M +  V 
Sbjct: 82  NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           +  +TV+  L    + G ++   R+ + I   D        T ++      G +  A  +
Sbjct: 142 S--WTVM--LGGLIEDGRVDEARRLFDMIPVKDV----VASTNMIGGLCSEGRLSEAREI 193

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E  +++++ WT+MI G A++ + + A + F+ M     + +   + A+L     SG++
Sbjct: 194 FDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVM----PDKNEVTWTAMLKGYTRSGRI 249

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVV--NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471
             A   F +M     ++P    + +++   L   VG+    +           Q+K K  
Sbjct: 250 NEAAELFKAMP----VKPVAACNGMIMGFGLNGEVGKARWVFD----------QMKEKDD 295

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD-PG-WSYIEVNGHVHRFEAGGHKLAK 529
            ++  L  IY  +G   +   + +LMQR  ++ + P   S + V G +   + G     +
Sbjct: 296 GTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHG-----R 350

Query: 530 EIHSKL 535
           ++HS+L
Sbjct: 351 QVHSQL 356


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 225/713 (31%), Positives = 362/713 (50%), Gaps = 111/713 (15%)

Query: 30  TETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE  + +L+ +  S K   Q +Q+HAQ++     +   ++  L   + ++   D +L +F
Sbjct: 5   TEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHD-SLRLF 63

Query: 87  D--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +  HF P     +  +IR    +      +  F+ ML   + P+   +P V KS A L  
Sbjct: 64  NTIHFPPA--LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL------GKTR-GAFKVFDETPEKNKS- 196
           L+LG  LH  I++ G+++D +    L +MY +L      G+ R GA +VFDE  E+ +S 
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 197 --------------------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN------- 229
                               + ++ WN +I G ++ G   + + +   M   N       
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241

Query: 230 ----------------------------------VASWVSLIDGFMRKGDLKKAGELFEQ 255
                                             VAS  SLID + +   +  +  +F  
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVAS--SLIDMYAKCTRVADSCRVFTL 299

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           + E+  +SW ++I G  QNG  ++ L  F QML A ++   ++  S + ACA +  L  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H YI+ N F     I ++LVDMYAKCGNI  A  +F   + +D+++WTAMI G A+H
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G+   AI+ F++M   G +P+   F+A+LTAC + G V  A  +F+SM  D+ I P V+H
Sbjct: 420 GQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEH 479

Query: 436 HTVVVNLLSRVGQDSQGYQ----------------------------NSQNSFTKLLQLK 467
           +  V +LL R G+  + Y                              ++    ++L++ 
Sbjct: 480 YAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVD 539

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           P +  +Y+LL+NIY+A  RWK+ A+ R  M+R  I+K P  S+IEV   V+ F AG   H
Sbjct: 540 PNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESH 599

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTP 584
              ++I   +E ++    ++GY+P T  V H+++EE+++ L C HSE+LA+ FG+I T  
Sbjct: 600 PCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPA 659

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G TI++ K L +C DCH+  K+ SKI  REIV+RD +RFH+FK+GTCSC DYW
Sbjct: 660 GMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 712



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 14/266 (5%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP ++ T + ++ LI  +    + ++IH   I   L A   + + LI   +    +  + 
Sbjct: 236 KP-DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F   T ++   +N +I G  +N  F   +  F  ML   ++P   ++  +  + A L+
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG+ LH  I ++G + + F+   L DMY + G  R A ++FD    + +   ++ W 
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD----RMRLRDMVSWT 410

Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            +I GC+  G    A+ELF  M     K N  ++++++      G + +A + F  M   
Sbjct: 411 AMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRD 470

Query: 260 -----GVVSWTAMINGFSQNGEAEKA 280
                GV  + A+ +   + G  E+A
Sbjct: 471 FGIAPGVEHYAAVSDLLGRAGRLEEA 496


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 214/673 (31%), Positives = 348/673 (51%), Gaps = 76/673 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++      K L+QIHAQII   L  ++ ++  L+++      +  A  IF H   KN+ 
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVV 88

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            + +LI GLA+N  F   I  F  M+  + +PN +T   V  + A+L L+ + + +HC  
Sbjct: 89  SWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           V+ G E + FV   L DMY + G    A ++F+   E+N    V+ WN +++G S  G+ 
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERN----VVTWNAIVSGYSDHGFS 204

Query: 216 RKAVELFGMMPKKNV------------ASW---------------------------VSL 236
            +A++LF +M +K +            AS                             +L
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL 264

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRAN 295
           +D ++    +  A  +F +M  K V +WT M+ GFS     ++A+  F +ML    ++ +
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLD 324

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
              ++  LS+C+  GAL+ G RVH       F     +G+A++DMYA CGN+E A   F 
Sbjct: 325 SIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFY 384

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              EKD++ W AMI G  ++G    AI  F +M  SG +PD + F+++L AC ++G V  
Sbjct: 385 GMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYE 444

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL--- 464
            L  F  M     + P+++H+  V+++L R GQ        ++  +Q   + ++ LL   
Sbjct: 445 GLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGAC 504

Query: 465 -----------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                            +++P     YVLLSN+YA  G W+ V   R  ++ + +KKDPG
Sbjct: 505 RIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPG 564

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
           +S IE+N  ++ F AG   H    +I   L+ ++   ++ GY+P T  +L ++ ++ K++
Sbjct: 565 FSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKD 624

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            L  HSEK+A+AFGL++T P T I+I K L  C DCH+  K+ SK+  R +V++D  RFH
Sbjct: 625 ILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFH 684

Query: 624 YFKDGTCSCRDYW 636
            F+DG CSCRDYW
Sbjct: 685 VFQDGVCSCRDYW 697


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/593 (35%), Positives = 320/593 (53%), Gaps = 43/593 (7%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IFD  T KN+  FNV+IR    N  ++  +  +  M      P+  TYP V K+ + 
Sbjct: 73  ARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSR 132

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              L +G  +H  ++K G++ + +V   L  MY +    + A +V DE P ++    V+ 
Sbjct: 133 SDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRD----VVS 188

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR--KGDLKKAGELFEQ 255
           WN +++  ++ G    A+EL   M     K N  +  SL+         ++    E+F +
Sbjct: 189 WNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLK 248

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           + +K V+SW  MI  +  N   ++A+ ++ QM   GV  +  ++VS L A   + AL  G
Sbjct: 249 LTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLG 308

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            RVH +           +  AL+DMYAKCG +  A  VF + + +D+++WT++I      
Sbjct: 309 RRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKC 368

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G+   A+  F +M  SG  PD   F+++L AC ++G +     +F+ M  +  I P ++H
Sbjct: 369 GQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDGRYYFNLMA-ECGITPKLEH 427

Query: 436 HTVVVNLLSRVGQDSQGY------------------------QNSQN----SFTKLLQLK 467
              VV+LL R G+  + Y                         ++ N    +  KLL L 
Sbjct: 428 FACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRVYSNMNIGILAADKLLMLN 487

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           P+H   YVLLSNIYA  GRW DVA +R++M+R+ IKK PG S +E+N  VH F AG   H
Sbjct: 488 PEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSH 547

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTP 584
             +K+I+ +L+ ++   +E GYMP T+  LH+++EE KE  L  HSEKLA+AF +I T P
Sbjct: 548 PQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKP 607

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           GT I++ K L +CGDCH   K  SKI++REI++RDT RFH+F++G CSC DYW
Sbjct: 608 GTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHRFHHFQEGCCSCGDYW 660



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 87/178 (48%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           N +  + L+  +   G+   A  +F+++ +K VV +  MI  +  N   + AL ++  M 
Sbjct: 53  NPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSYVNNHLYKDALLVYKTMY 112

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G   + +T    L A ++  +L  G+++H  +      L   +G  L+ MY KC +++
Sbjct: 113 TQGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLK 172

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            A  V  E   +D+++W +M+   A +GR+  A++  ++M     +P+     ++L A
Sbjct: 173 EAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEALNLKPNDCTMASLLPA 230



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 83/387 (21%), Positives = 146/387 (37%), Gaps = 65/387 (16%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           QIH  ++   L  +  +   LI+     KS+  A  + D    +++  +N ++   A+N 
Sbjct: 141 QIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNG 200

Query: 109 HFQSCISHFVFMLRLSVRPNRLT----YPFVS-------------------KSVASLSLL 145
            F   +     M  L+++PN  T     P V+                   KSV S +++
Sbjct: 201 RFNDALELCREMEALNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVM 260

Query: 146 -------SLGRG---LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
                  S+ +    L+  +  +GVE D    V +   Y  L       +V      K  
Sbjct: 261 IAMYVNNSMPKEAVVLYSQMEANGVEPDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKL 320

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
             ++LL N LI+  +K G LR A  +F  M  ++V SW S+I                  
Sbjct: 321 LPNLLLENALIDMYAKCGCLRDARAVFNQMQFRDVVSWTSII------------------ 362

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
                        + + + G+   A+A+F +M ++G+  +    VS L+AC+  G L+ G
Sbjct: 363 -------------SAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLLDDG 409

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAI 374
               N ++      K      +VD+  + G I EA   +     E D   W  ++    +
Sbjct: 410 RYYFNLMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLSACRV 469

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           +      I    K++    E  G   L
Sbjct: 470 YSNMNIGILAADKLLMLNPEHSGYYVL 496


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/631 (32%), Positives = 324/631 (51%), Gaps = 76/631 (12%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           + ++ A  +FD    +++  +N +I G   N   +  +  F  ML L +  +  T   V 
Sbjct: 199 RRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVV 258

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
              ++  +L LGR LH   +K+    +  +   L DMY + G    A +VF+   E+   
Sbjct: 259 AGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGER--- 315

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------------KNV 230
            SV+ W  +I G ++ G    +V LF  M K                          K+V
Sbjct: 316 -SVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENGKDV 374

Query: 231 ASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
            +++             +L+D + + G +  A  +F +M  K +VSW  MI G+S+N   
Sbjct: 375 HNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLP 434

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +AL +F +M     + N  T+   L ACA + ALE G  +H +I  N F L   +  AL
Sbjct: 435 NEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANAL 493

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           VDMY KCG +  A L+F    EKDL++WT MI G  +HG   +AI  F +M  SG EPD 
Sbjct: 494 VDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 553

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN-- 455
             F++IL AC +SG +     FF+ MR +  IEP  +H+  +V+LL+R G  S+ Y+   
Sbjct: 554 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 613

Query: 456 --------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                                     ++     + +L+P++   YVLL+NIYA   +W++
Sbjct: 614 MMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEE 673

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGY 547
           V ++R  + RR ++K+PG S+IE+ G VH F  G   H LA +I   L+      +E+G+
Sbjct: 674 VKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGH 733

Query: 548 MPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
            P   + L    + EKE AL  HSEK+A+AFG++   PG T+++ K L +CGDCH + K+
Sbjct: 734 FPKMRYALIKADDTEKEMALCGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKF 793

Query: 607 ASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            SK+ +R+I+LRD+ RFH+FKDG+CSCR +W
Sbjct: 794 MSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 149/281 (53%), Gaps = 17/281 (6%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TY  V +  A L  +  GR +H +I  + VE D  +   L  MYV  G  R   ++FD  
Sbjct: 103 TYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFD-- 160

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
             K  +E V LWN+L+NG +KIG  R+++ LF  M +  +               ++ A 
Sbjct: 161 --KVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRR-------------VESAR 205

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           +LF+++ ++ V+SW +MI+G+  NG +EK L +F QML  G+  +  T+VS ++ C+  G
Sbjct: 206 KLFDELGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTG 265

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            L  G  +H Y     FG +  +   L+DMY+K GN+ +A  VF    E+ +++WT+MI 
Sbjct: 266 MLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIA 325

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
           G A  G  + +++ F +M   G  PD      IL AC  +G
Sbjct: 326 GYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTG 366



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 61/128 (47%), Gaps = 2/128 (1%)

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +  +   I  F + G   +A+ +  Q     +     T  S L  CA + +++ G R+H+
Sbjct: 68  ITDYNIEICRFCELGNLRRAMELINQSPKPDLELR--TYCSVLQLCADLKSIQDGRRIHS 125

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            I  ND  + G +G+ LV MY  CG++     +F +   + +  W  ++ G A  G + +
Sbjct: 126 IIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRE 185

Query: 381 AIQYFKKM 388
           ++  FK+M
Sbjct: 186 SLSLFKRM 193



 Score = 42.4 bits (98), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 48/247 (19%), Positives = 97/247 (39%), Gaps = 18/247 (7%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N+IT   I+    S  + ++ ++IH  I+ +       +   L+       ++  A 
Sbjct: 449 KP-NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLAR 507

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD    K+L  + V+I G   + +    I+ F  M    + P+ +++  +  + +   
Sbjct: 508 LLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSG 567

Query: 144 LLSLGRGL------HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           LL  G G       +C I      Y   V     D+  + G    A+K     P +  + 
Sbjct: 568 LLDEGWGFFNMMRNNCCIEPKSEHYACIV-----DLLARAGNLSKAYKFIKMMPIEPDAT 622

Query: 198 SVLLWNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
              +W  L+ GC     +    K  E    +  +N   +V L + +      ++  +L E
Sbjct: 623 ---IWGALLCGCRIYHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRE 679

Query: 255 QMPEKGV 261
           ++  +G+
Sbjct: 680 RIGRRGL 686


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 203/590 (34%), Positives = 308/590 (52%), Gaps = 65/590 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++YA  +FD    +++  ++ +IR L+ N  F   +     M  + VRP+ +    +   
Sbjct: 175 VEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNL 234

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A  + + +G+ +H  ++++                                   N+   
Sbjct: 235 FADTANMRMGKAMHAYVIRNS---------------------------------NNEHMG 261

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           V     L++  +K G+L  A +LF  + +K V SW ++I G +R   L++A  LF+    
Sbjct: 262 VPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQN 321

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + V+ WTAM++ ++Q    ++A  +F QM  +GVR    T+VS LS CA  GAL+ G  V
Sbjct: 322 RDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWV 381

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H+YI      +   + TALVDMYAKCG+I AA  +F E   +D+  W A+I G A+HG  
Sbjct: 382 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 441

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           E+A+  F +M   G +P+   F+ +L AC ++G V      F+ M   + + P ++H+  
Sbjct: 442 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 501

Query: 439 VVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPKH 470
           +V+LL R G   + +                            Q  + + T+LL+++P++
Sbjct: 502 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN 561

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
               VL+SNIYAA  RW D A VR  M+   +KK+PG S IEVNG VH F  G   H   
Sbjct: 562 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQI 621

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTT 587
           + I+  L ++     E GY+P T  VL NI +EEKE AL  HSEKLA+AFGLI T P T 
Sbjct: 622 RRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTP 681

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I+IVK L +C DCH+  K  SKI  R I++RD  RFH+F++G CSC DYW
Sbjct: 682 IRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/141 (23%), Positives = 71/141 (50%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W  +I  +++  +   AL ++ Q+       ++F   S L AC +V   + G  +H ++ 
Sbjct: 92  WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVL 151

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
                    +G AL+ MY +C  +E A LVF +  E+D+++W+ MI  L+ +  ++ A++
Sbjct: 152 KKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALE 211

Query: 384 YFKKMMYSGTEPDGTVFLAIL 404
             ++M +    P     ++++
Sbjct: 212 LIREMNFMQVRPSEVAMVSMV 232


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  352 bits (903), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 208/652 (31%), Positives = 346/652 (53%), Gaps = 49/652 (7%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P+++     ++ L       +  + +  +++  ++F+       L+S+ +   SI    
Sbjct: 54  QPTDSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFS----WNALLSAYAKSGSIQNLK 109

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           + FD    ++   +N  I G + NS  Q  +  F  M R    P   T   +  + A LS
Sbjct: 110 ATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLS 169

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L  G+ +H  I+      + F+   L DMY + G+   A  +FD   +KN    ++ WN
Sbjct: 170 DLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKN----LVSWN 225

Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           ++I+G +K G   K + L       G MP +   S  ++I  + + G + +A  +F +  
Sbjct: 226 LMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMS--TIIAAYCQCGRVDEARRVFSEFK 283

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           EK +V WTAM+ G+++NG  E AL +F +ML   +  + +T+ S +S+CAK+ +L  G  
Sbjct: 284 EKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCAKLASLHHGQA 343

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           VH             + +AL+DMY+KCG I+ A  VF     +++++W AMI G A +G 
Sbjct: 344 VHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQNGH 403

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            + A++ F+ M+    +PD   F+ IL+AC +   ++    +FDS+   + + P++ H+ 
Sbjct: 404 DKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYA 463

Query: 438 VVVNLLSRVGQDSQGYQ----------------------------NSQNSFTKLLQLKPK 469
            +VNLL R G+  Q                               N++ +   L +L P 
Sbjct: 464 CMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPT 523

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKL 527
               Y++LSN+YA+ GRWKDVA VR LM+ +++KK  G+S+IE++  VHRF  E   H  
Sbjct: 524 IAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHRFTSEDRTHPE 583

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPG- 585
           +++I+ KL  ++   +E+G+ P T  VLH++ E EK +++  HSEKLALAFGLI+   G 
Sbjct: 584 SEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALAFGLIKKPNGI 643

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + I+I+K + IC DCH  MK+AS+I  R+I+LRD+ RFH+F  G CSC D W
Sbjct: 644 SPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCNDNW 695



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 30/265 (11%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H   ++ T + ++S      S    + +H + IL  L  +  +++ LI   S    ID A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
            S+F+    +N+  +N +I G A+N H +  +  F  ML+   +P+ +T+  +       
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI------- 429

Query: 143 SLLSLGRGLHCLIVKSGVEY-DAFVRV--------HLADMYVQLGKTRGAFKVFDETPEK 193
               L   LHC  ++ G EY D+            H A M   LG+T    +        
Sbjct: 430 ----LSACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
                 L+W+ L++ CS  G +  A      LF + P   V  ++ L + +   G  K  
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVP-YIMLSNMYASMGRWKDV 544

Query: 250 GELFEQMPEKGV-----VSWTAMIN 269
             +   M  K V      SW  + N
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDN 569


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 221/700 (31%), Positives = 354/700 (50%), Gaps = 77/700 (11%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           L  A+A    + S+  P    T T ++ L  +       R +HAQ+    + + +   T 
Sbjct: 40  LPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATA 99

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRP 127
           L +  +  +    A  +FD    ++   +N L+ G A N   +  +   V M      RP
Sbjct: 100 LANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERP 159

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           + +T   V  + A+   L+  R  H   ++SG+E    V   + D Y + G  R A  VF
Sbjct: 160 DSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVF 219

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------------------- 228
           D  P KN     + WN +I+G ++ G  R+A+ LF  M ++                   
Sbjct: 220 DWMPTKNS----VSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGEL 275

Query: 229 --------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                               NV+   +LI  + +   +  A  +F+++  +  VSW AMI
Sbjct: 276 GCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMI 335

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G +QNG +E A+ +F +M    V+ + FT+VS + A A +        +H Y       
Sbjct: 336 LGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIRLHLD 395

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               + TAL+DMYAKCG +  A ++F   +E+ ++TW AMI G   HG  + A++ F++M
Sbjct: 396 QDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEM 455

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  P+ T FL++L+AC ++G V     +F SM+ DY +EP ++H+  +V+LL R G+
Sbjct: 456 KSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGK 515

Query: 449 DSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNI 480
             + +                            + ++ S  K+ +L P+    +VLL+NI
Sbjct: 516 LDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHVLLANI 575

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YA    WKDVARVRT M++  ++K PGWS I++   +H F +G   H+ AKEI+S+L  +
Sbjct: 576 YANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKL 635

Query: 539 MAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
           +   +  GY+P T+ + H+++++ K + L  HSEKLA+AFGLI+T PGTTI+I K L +C
Sbjct: 636 IEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKKNLRVC 694

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+  K  S ++ REI++RD  RFH+FKDG CSC DYW
Sbjct: 695 NDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 170/341 (49%), Gaps = 48/341 (14%)

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
           S   + ++ FV M      P   T+  + K  A+   L+ GR +H  +   G++ +A   
Sbjct: 38  SDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAA 97

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             LA+MY +  +   A +VFD  P +++    + WN L+ G ++ G  R A+E+   M +
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDR----VAWNALVAGYARNGLARMAMEMVVRMQE 153

Query: 228 K------------------------------------------NVASWVSLIDGFMRKGD 245
           +                                          NVA+  +++D + + GD
Sbjct: 154 EEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVAT--AILDAYCKCGD 211

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           ++ A  +F+ MP K  VSW AMI+G++QNG++ +ALA+F +M++ GV   D +V++AL A
Sbjct: 212 IRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQA 271

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C ++G L+ G+RVH  +         ++  AL+ MY+KC  ++ AS VF E   +  ++W
Sbjct: 272 CGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSW 331

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            AMI G A +G  E A++ F +M     +PD    ++++ A
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 191/506 (37%), Positives = 292/506 (57%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   YVQ G    A K FDE P KN+    + +N ++ G  +   +  A ELF
Sbjct: 262 DVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNE----ISYNAMLAGYVQYKKMVIAGELF 317

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             MP +N++SW ++I G+ + G + +A +LF+ MP++  VSW A+I+G++QNG  E+AL 
Sbjct: 318 EAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALN 377

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MF +M   G  +N  T   ALS CA + ALE G +VH  +    F     +G AL+ MY 
Sbjct: 378 MFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYF 437

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+ + A+ VF   +EKD+++W  MI G A HG   QA+  F+ M  +G +PD    + 
Sbjct: 438 KCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVG 497

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---- 458
           +L+AC +SG +     +F SM  DY ++P+ KH+T +++LL R G+  +     +N    
Sbjct: 498 VLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFD 557

Query: 459 ----SFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
               S+  LL                    +++P++   YVLLSN+YAA GRW DV ++R
Sbjct: 558 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVGKMR 617

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
           + M+   ++K  G+S++EV   +H F  G   H     I++ LE++    R +GY+  T+
Sbjct: 618 SKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVSSTK 677

Query: 553 WVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH+++EE KE  L  HSEKLA+AFG++    G  I+++K L +C DCH+ +K+ SKI 
Sbjct: 678 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHISKIV 737

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F +G CSC DYW
Sbjct: 738 GRLIILRDSHRFHHFSEGICSCGDYW 763



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 66/242 (27%), Positives = 120/242 (49%), Gaps = 35/242 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           +++ G    A +VF+  P +    S + +N +I+G  +      A +LF  MP++++ SW
Sbjct: 56  HMRNGHCDSALRVFNSMPRR----SSVSYNAMISGYLRNAKFSLARDLFDKMPERDLFSW 111

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             ++ G++R   L +A +LF+ MP+K VVSW AM++G++QNG  ++A  +F +M      
Sbjct: 112 NVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKM----PH 167

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHN----------------YISCNDFG--------- 328
            N  +    L+A    G L+   R+                  Y+  N  G         
Sbjct: 168 RNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDARQLFDRM 227

Query: 329 -LKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
            ++  I    ++  YA+ G++  A  +F E+  +D+ TWTAM+ G   +G  ++A +YF 
Sbjct: 228 PVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFD 287

Query: 387 KM 388
           +M
Sbjct: 288 EM 289



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 111/263 (42%), Gaps = 48/263 (18%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +I+    +  I  A  +FD    ++   +  +I G A+N H++  ++ FV M R     N
Sbjct: 331 MITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSN 390

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
           R T+     + A ++ L LG+ +H  +VK+G E   FV   L  MY + G T  A  VF+
Sbjct: 391 RSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFE 450

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------- 232
              EK+    V+ WN +I G ++ G+ R+A+ LF  M K  V                  
Sbjct: 451 GIEEKD----VVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSG 506

Query: 233 ------------------------WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAM 267
                                   +  +ID   R G L++A  L   MP + G  SW A+
Sbjct: 507 LIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGAL 566

Query: 268 INGFSQNGE---AEKALAMFFQM 287
           +     +G     EKA  M F+M
Sbjct: 567 LGASRIHGNTELGEKAAEMVFKM 589


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  352 bits (903), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 221/686 (32%), Positives = 349/686 (50%), Gaps = 80/686 (11%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N+ T + I+    +    ++ RQ+H  I      + + +   LIS   + + +  A 
Sbjct: 248 KP-NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQ 306

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD  T +++  +N +I G  +N      I  F+ ML   V  +  T   V  + A++ 
Sbjct: 307 KLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIG 366

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            L LG+ LH   +K+    D  VR +  L DMY + G    A +VF+   EK    +V+ 
Sbjct: 367 TLLLGKVLHSYSIKAAT-LDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEK----TVVS 421

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA------------------------------ 231
           W  +I G  + G    A++LF  M  + V                               
Sbjct: 422 WTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIR 481

Query: 232 -------SWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                  S+VS  L D + + G +K A ++F  M +K V+SW  MI G+++N    +AL 
Sbjct: 482 ENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALT 541

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M     + +  TV   L ACA + AL+ G  +H Y   N +     +  A+VDMY 
Sbjct: 542 LFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYV 600

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG +  A  +F     KDL++WT MI G  +HG   +AI  F +M  +G EPD   F++
Sbjct: 601 KCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFIS 660

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------- 455
           IL AC +SG +      F+ M+ +  IEP+++H+  +V+LL+R G   + ++        
Sbjct: 661 ILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK 720

Query: 456 ---------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                ++    ++ +L+P++   YVLL+NIYA   +W++V ++R
Sbjct: 721 PDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLR 780

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             + +R +KK+PG S+IE+ G ++ F AG      AK+I   L+ + +  +E+GY P T 
Sbjct: 781 KKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTA 840

Query: 553 WVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
           + L N  E EKE AL  HSEKLA+AFG++   PG TI++ K L +CGDCH + K+ SK +
Sbjct: 841 YALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSA 900

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
            REI+LRD +RFH+FKDG+CSCR YW
Sbjct: 901 SREIILRDSSRFHHFKDGSCSCRGYW 926



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 106/215 (49%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           V L+  +++ GDLK+   +F+++ E  +  W  MI+ +S +G   +++ +F QML+ G++
Sbjct: 189 VKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIK 248

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N +T  S L   A V  +E G +VH  I    F     +  +L+  Y     +  A  +
Sbjct: 249 PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKL 308

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E  ++D+++W +MI G   +G  ++ I+ F KM+  G + D    + +  AC   G +
Sbjct: 309 FDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTL 368

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
            L             ++  V+ +  ++++ S+ G 
Sbjct: 369 LLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGD 403



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 55/104 (52%)

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L  CA+  ++  G RV + I  +   + G +G  LV MY KCG+++   +VF +  E 
Sbjct: 155 SILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSES 214

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            +  W  MI   +  G Y ++I  FK+M+  G +P+   F +IL
Sbjct: 215 KIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSIL 258


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  352 bits (902), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 216/673 (32%), Positives = 347/673 (51%), Gaps = 76/673 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++      K L+QIHAQII   L  ++ ++  L+++      +  A  IF H   KN+ 
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVV 88

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            + +LI GLA+N  F   I  F  M   + +PN +T   V  + A+L L+ + + +HC  
Sbjct: 89  SWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFW 148

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           V+ G E + FV   L DMY + G    A ++F+   E+N    V+ WN +++G S  G+ 
Sbjct: 149 VRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERN----VVSWNAIVSGYSDHGFS 204

Query: 216 RKAVELFGMMPKKNV------------ASW---------------------------VSL 236
            +A++LF +M +K +            AS                             +L
Sbjct: 205 EEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTAL 264

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRAN 295
           +D ++    +  A  +F +M  K V +WT M+ GFS     ++A+  F +ML    ++ +
Sbjct: 265 MDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLD 324

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
              ++  LS+C+  GAL+ G RVH       F     +G+A++DMYA CGN+E A   F 
Sbjct: 325 SIVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFY 384

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              EKD++ W AMI G  ++G    AI  F +M  SG +PD + F+++L AC ++G V  
Sbjct: 385 GMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYE 444

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL--- 464
            L  F  M       P+++H+  V+++L R GQ        ++  +Q   + ++ LL   
Sbjct: 445 GLQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGAC 504

Query: 465 -----------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                            +++P     YVLLSN+YA  G W+ V   R  ++ + +KKDPG
Sbjct: 505 RIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPG 564

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
           +S IE+N  ++ F AG   H    +I   L+ ++   ++ GY+P T  +L ++ ++ K++
Sbjct: 565 FSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKD 624

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            L  HSEK+A+AFGL++T PGT I+I K L  C DCHS  K+ SK+  R +V++D  RFH
Sbjct: 625 ILYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFH 684

Query: 624 YFKDGTCSCRDYW 636
            F+DG CSCRDYW
Sbjct: 685 VFQDGVCSCRDYW 697


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 208/649 (32%), Positives = 342/649 (52%), Gaps = 79/649 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID-----YAL 83
           + E  ++S++H      Q++Q+HA II + L   S + T+LI    +   +D     Y L
Sbjct: 40  LLEWRLMSILHDCTLFSQIKQVHAHIIRNGLSQCSYVLTKLIR---MLTKVDVPMGSYPL 96

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F      N  ++  +IRG A         + +  M R  V P   T+  + K+  +  
Sbjct: 97  LVFGQVNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAAL 156

Query: 144 LLSLGRGLHC-LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
            + LG+ +H   I+  G   D +V   + D+YV                           
Sbjct: 157 NMDLGKQVHAQTILIGGFASDLYVGNSMIDLYV--------------------------- 189

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                   K G+L  A ++F  M +++V SW  LI  + + GD++ A  LF+ +P K +V
Sbjct: 190 --------KCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMV 241

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +WTAM+ G++QNG  ++AL  F +M D G+  ++ T+   +SACA++GA++    + +  
Sbjct: 242 AWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIA 301

Query: 323 SCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
             + FG  G   +G+AL+DMY+KCG+ + A  VF   KE+++ ++++MI G A+HGR   
Sbjct: 302 ERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHS 361

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+Q F  M+ +   P+   F+ IL+AC ++G V+     F  M   + + PS  H+  +V
Sbjct: 362 ALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMV 421

Query: 441 NLLSRVG--------------QDSQGYQNS--------------QNSFTKLLQLKPKHPS 472
           +LL R G              + + G   +              Q +  +L +L+P    
Sbjct: 422 DLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKLEPNGIG 481

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAGG--HKLAK 529
           +Y+LLSNIYA+ GRW++V+++R +++ +  KK+PG S+ E  NG +H F AG   H  + 
Sbjct: 482 NYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDTTHPRSS 541

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           EI   L+ ++   R  GY P      +++  +EKE  L  HSEKLALA+GL+ T  G TI
Sbjct: 542 EIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCTEAGDTI 601

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           KI+K + IC DCH++M  AS+I+ REI++RD  RFH+F +GTCSC ++W
Sbjct: 602 KIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 220/686 (32%), Positives = 339/686 (49%), Gaps = 73/686 (10%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           KS+    N+ T    IS        +  R IH Q ++    +   + + ++        +
Sbjct: 111 KSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRV 170

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
           + A  +FD    K+  ++N +I G  +N  +   I  F  ++  S  R +  T   +  +
Sbjct: 171 EDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPA 230

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           VA L  L LG  +H L  K+G     +V      +Y + GK +    +F E     +   
Sbjct: 231 VAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREF----RKPD 286

Query: 199 VLLWNVLINGCSKIGYLRKAVELF--------------------------------GMMP 226
           ++ +N +I+G +  G    ++ LF                                G   
Sbjct: 287 IVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCL 346

Query: 227 KKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           K N  S  S    L   + +  +++ A +LF++ PEK + SW AMI+G++QNG  E A++
Sbjct: 347 KSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAIS 406

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M  +    N  T+   LSACA++GAL  G  VH+ +   DF     + TAL+ MYA
Sbjct: 407 LFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYA 466

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+I  A  +F    +K+ +TW  MI G  +HG+ ++A+  F +M+ SG  P    FL 
Sbjct: 467 KCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLC 526

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------- 455
           +L AC ++G VK     F+SM   Y  EPSVKH+  +V++L R G   +  Q        
Sbjct: 527 VLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIE 586

Query: 456 ---------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                ++    KL +L P +   +VLLSNI++A+  +   A VR
Sbjct: 587 PGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVR 646

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
              ++R + K PG++ IE+    H F +G   H   KEI+ KLE +    RE GY P TE
Sbjct: 647 QTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETE 706

Query: 553 WVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
             LH+++EE+ E +   HSE+LA+AFGLI T PGT I+I+K L +C DCH++ K  SKI+
Sbjct: 707 LALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKIT 766

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +R IV+RD  RFH+FKDG CSC DYW
Sbjct: 767 ERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/465 (26%), Positives = 212/465 (45%), Gaps = 49/465 (10%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           I++   +     S S   L Q HAQIILH       + T+L    S   +I YA  IF  
Sbjct: 18  ISKNTYLDFFKRSTSISHLAQTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSL 147
               ++ +FNVL+RG + N    S +S F  + +   ++PN  TY F   + +       
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H   V  G + +  +  ++  MY +  +   A KVFD  PEK+     +LWN +I+
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD----TILWNTMIS 193

Query: 208 G---------------------CSKIGY---------------LRKAVELFGMMPKKNVA 231
           G                     C+++                 LR  +++  +  K    
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253

Query: 232 SWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           S   ++ GF+    + G +K    LF +  +  +V++ AMI+G++ NGE E +L++F ++
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           + +G R    T+VS +     +  + A   +H Y   ++F    ++ TAL  +Y+K   I
Sbjct: 314 MLSGARLRSSTLVSLVPVSGHLMLIYA---IHGYCLKSNFLSHASVSTALTTVYSKLNEI 370

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E+A  +F E+ EK L +W AMI G   +G  E AI  F++M  S   P+      IL+AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSAC 430

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
              G + L     D +R   F E S+   T ++ + ++ G  ++ 
Sbjct: 431 AQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEA 474


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  351 bits (901), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 212/677 (31%), Positives = 354/677 (52%), Gaps = 76/677 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
            H+I     +   ++ +Q+HA +I       + +T  L++  S    +D+AL +FD    
Sbjct: 9   AHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +NL  +  +I GL++NS F   I  F  M      P +  +    ++ ASL  + +G+ +
Sbjct: 69  RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HCL +K G+  + FV  +L DMY + G    A KVF+E P K++    + W  +I+G SK
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSK 184

Query: 212 IGYLRKAVELFGMMPKKNV---------------------------ASWV---------- 234
           IG   +A+  F  M  + V                           +S V          
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 244

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
             +L D + + GD++ A  +F    E + VVS+T +I+G+ +  + EK L++F ++   G
Sbjct: 245 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 304

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           +  N+FT  S + ACA   ALE G ++H  +   +F     + + LVDMY KCG +E A 
Sbjct: 305 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAI 364

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
             F E  +   + W +++     HG  + AI++F++M+  G +P+   F+++LT C ++G
Sbjct: 365 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAG 424

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN----SQNSF----- 460
            V+  L++F SM   Y + P  +H++ V++LL R G  ++++ + N      N+F     
Sbjct: 425 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 484

Query: 461 -----------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                             KL++L+PK+  + VLLSNIYA E +W+DV  VR  M+  ++K
Sbjct: 485 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 544

Query: 504 KDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K PG+S+++V    H F  E   H     I+ KL+ ++   +  GY+P T+ V  ++ + 
Sbjct: 545 KLPGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDX 604

Query: 562 -KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
            KE+ L  HSE++A+AF LI    G  I + K L +C DCHS +K+ SK++ R+I++RD 
Sbjct: 605 MKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 664

Query: 620 TRFHYFKDGTCSCRDYW 636
           +RFH+F DG+CSC DYW
Sbjct: 665 SRFHHFTDGSCSCGDYW 681



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 108/271 (39%), Gaps = 38/271 (14%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + +I    +  + +Q  Q+HAQ++  N      +++ L+        +++A+  F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAF 367

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D         +N L+    ++   +  I  F  M+   V+PN +T+         +SLL+
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITF---------ISLLT 418

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
                H  +V+ G++Y           +  + KT G        P +        ++ +I
Sbjct: 419 GCS--HAGLVEEGLDY-----------FYSMDKTYGV------VPGEEH------YSCVI 453

Query: 207 NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL---KKAGELFEQMPEKGVV 262
           +   + G L++A E    MP + N   W S +      GD    K A E   ++  K   
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 513

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           +   + N ++   + E   ++  +M D  V+
Sbjct: 514 ALVLLSNIYANERQWEDVRSVRMRMRDGNVK 544


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 212/682 (31%), Positives = 348/682 (51%), Gaps = 76/682 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T  +++    + +   + ++IH   +   L +  R+ T L++       +D A   F
Sbjct: 228 DKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAF 287

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                +++ ++N LI  LA++ H       +  M    V  NR TY  +  + ++   L 
Sbjct: 288 KGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALE 347

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  I + G   D  +   L  MY + G    A ++F   P+++    ++ WN +I
Sbjct: 348 AGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRD----LISWNAII 403

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV--------------ASWVSLIDGFM----------- 241
            G ++     +A+ L+  M  + V              A+  +  DG M           
Sbjct: 404 AGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIK 463

Query: 242 --------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                         R G L +A  +FE    + V+SW +MI G +Q+G  E A  +F +M
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
            +  +  ++ T  S LS C    ALE G ++H  I+ +   L   +G AL++MY +CG++
Sbjct: 524 QNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSL 583

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTA 406
           + A  VF   + +D+++WTAMI G A  G   +AI+ F +M   G   PDG+ F +IL+A
Sbjct: 584 QDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSA 643

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN--------- 455
           C ++G V      F SM  +Y + P+++H+  +V LL R    Q+++   N         
Sbjct: 644 CNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAA 703

Query: 456 -----------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                            ++++    L+L  ++P+ Y+LLSN+YAA GRW DVA++R +M+
Sbjct: 704 VWETLLGACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVME 763

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
            R I+K+PG S+IEV+  +H F A    H    EI+++L+ +     E GY P T+ VLH
Sbjct: 764 GRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLH 823

Query: 557 NI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           ++ K  +E +L  HSE+LA+A+GLI+T PGT I+I K L ICGDCH+  K+ SK+  REI
Sbjct: 824 DLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREI 883

Query: 616 VLRDT-RFHYFKDGTCSCRDYW 636
           + RD+ RFH FK+G CSC DYW
Sbjct: 884 IARDSNRFHSFKNGKCSCEDYW 905



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 223/476 (46%), Gaps = 48/476 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT   I++  +S    +  ++IH+QII        R+   L+S       +  A  +F
Sbjct: 127 NKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVF 186

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
              +P+++  +N ++   A+ ++ + C+  F  M    + P+++TY  +  +  + S+L 
Sbjct: 187 AGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLD 246

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H L V+ G+  D  V   L  M V+ G    A + F    +++    V+++N LI
Sbjct: 247 EGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRD----VVVYNALI 302

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLI---------------------DG-- 239
              ++ G+  +A E +  M    VA    +++S++                     DG  
Sbjct: 303 AALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHS 362

Query: 240 ------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                       + R GDL KA ELF  MP++ ++SW A+I G+++  +  +A+ ++ QM
Sbjct: 363 SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQM 422

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
              GV+    T +  LSACA   A   G  +H  I  +     G +  AL++MY +CG++
Sbjct: 423 QSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGSL 482

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             A  VF  T+ +D+++W +MI G A HG YE A + F++M     EPD   F ++L+ C
Sbjct: 483 MEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGC 542

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
                ++L       +  +  ++  V     ++N+  R G      Q+++N F  L
Sbjct: 543 KNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMYIRCGS----LQDARNVFHSL 593



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 207/433 (47%), Gaps = 47/433 (10%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSA 73
           ++ ++H+P    T+      +  + + K+L    ++IHAQ++   +     ++  LI+  
Sbjct: 13  DVSNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMY 72

Query: 74  SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
              +S+  A  +F     +++  +N LI   A+    +     F  M      PN++TY 
Sbjct: 73  VKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYI 132

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
            +  +  S + L  G+ +H  I+K+G + D  V+  L  MY + G    A +VF     +
Sbjct: 133 SILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPR 192

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGF--------- 240
           +    V+ +N ++   ++  Y+++ + LFG M  + ++    ++++L+D F         
Sbjct: 193 D----VVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEG 248

Query: 241 --------------------------MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                                     +R GD+  A + F+ + ++ VV + A+I   +Q+
Sbjct: 249 KRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQH 308

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G   +A   +++M   GV  N  T +S L+AC+   ALEAG  +H++IS +       IG
Sbjct: 309 GHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIG 368

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+ MYA+CG++  A  +F    ++DL++W A+I G A      +A++ +K+M   G +
Sbjct: 369 NALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVK 428

Query: 395 PDGTVFLAILTAC 407
           P    FL +L+AC
Sbjct: 429 PGRVTFLHLLSAC 441



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 10/209 (4%)

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T V+ L  C +   L    R+H  +     G    +   L++MY KC ++  A  VF E 
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEM 88

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
             +D+++W ++I   A  G  ++A Q F++M  +G  P+   +++ILTAC+   +++   
Sbjct: 89  PRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGK 148

Query: 418 NFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
                 ++  Y  +P V++     +LLS  G+     +  Q        + P+   SY  
Sbjct: 149 KIHSQIIKAGYQRDPRVQN-----SLLSMYGKCGDLPRARQ----VFAGISPRDVVSYNT 199

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           +  +YA +   K+   +   M    I  D
Sbjct: 200 MLGLYAQKAYVKECLGLFGQMSSEGISPD 228


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 212/627 (33%), Positives = 320/627 (51%), Gaps = 73/627 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
           ++ A  +FD    K+  ++N +I G  +N  +   I  F  ++  S  R +  T   +  
Sbjct: 170 VEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILP 229

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +VA L  L LG  +H L  K+G     +V      +Y + GK + A  +F E     +  
Sbjct: 230 AVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREF----RRP 285

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF----------------GMMP--------------- 226
            ++ +N +I+G +  G    ++ LF                 ++P               
Sbjct: 286 DIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYS 345

Query: 227 -KKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
            K N  S  S    L   + +  +++ A +LF++ PEK + SW AMI+G++QNG  E A+
Sbjct: 346 LKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAI 405

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
           ++F +M ++    N  T+   LSACA++GAL  G  VH+ +   DF     + TAL+ MY
Sbjct: 406 SLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMY 465

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AKCG+I  A  +F    +K+ +TW  MI G  +HG  ++A+  F +M+ SG  P    FL
Sbjct: 466 AKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFL 525

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------ 455
            +L AC ++G VK     F+SM   Y  EPSVKH+  VV++L R G   +  Q       
Sbjct: 526 CVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPI 585

Query: 456 ----------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                                 ++    KL +L P +   +VLLSNI++A+  +   A V
Sbjct: 586 QPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATV 645

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R   ++R + K PG++ IE+    H F +G   H   K IH KLE +    RE GY P T
Sbjct: 646 RQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHEKLEKLEGKMREAGYQPET 705

Query: 552 EWVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           E  LH+++EE+ E +   HSE+LA+AFGLI T PGT I+I+K L +C DCH+  K  SKI
Sbjct: 706 ELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKLISKI 765

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++R IV+RD  RFH+FKDG CSC DYW
Sbjct: 766 TERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 213/465 (45%), Gaps = 49/465 (10%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           I++ + + L   S S   L Q HAQI+LH       + T+L    S   +I YA  IF  
Sbjct: 18  ISKNNFLDLFKRSTSISHLAQTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLS 77

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSL 147
               ++ +FNVL+RG + N    S ++ F  + +   ++PN  TY F   + +       
Sbjct: 78  VQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRA 137

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G  +H   +  G + +  +  ++  MY +  +   A KVFD  PEK+     +LWN +I+
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKD----TILWNTMIS 193

Query: 208 G---------------------CSKIGY---------------LRKAVELFGMMPKKNVA 231
           G                     C+++                 LR  +++  +  K    
Sbjct: 194 GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCY 253

Query: 232 SWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           S   ++ GF+    + G +K A  LF +     +V++ AMI+G++ NGE E +L++F ++
Sbjct: 254 SHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKEL 313

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           + +G +    T+VS +     +  + A   +H Y   ++F    ++ TAL  +Y+K   I
Sbjct: 314 MLSGAKLKSSTLVSLVPVSGHLMLIYA---IHGYSLKSNFLSHTSVSTALTTVYSKLNEI 370

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E+A  +F E+ EK L +W AMI G   +G  E AI  F++M  S   P+      IL+AC
Sbjct: 371 ESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSAC 430

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
              G + L     D +R   F E S+   T ++ + ++ G  ++ 
Sbjct: 431 AQLGALSLGKWVHDLVRSTDF-ESSIYVSTALIGMYAKCGSIAEA 474



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 120/263 (45%), Gaps = 13/263 (4%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++SL+  S     +  IH   +  N  + + ++T L +  S    I+ A  +FD    K+
Sbjct: 325 LVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKS 384

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           L  +N +I G  +N   +  IS F  M      PN +T   +  + A L  LSLG+ +H 
Sbjct: 385 LPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHD 444

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           L+  +  E   +V   L  MY + G    A ++FD  P+KN+    + WN +I+G    G
Sbjct: 445 LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNE----VTWNTMISGYGLHG 500

Query: 214 YLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSW 264
           + ++A+ +F  M    +A    +++ ++      G +K+  E+F  M      E  V  +
Sbjct: 501 HGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY 560

Query: 265 TAMINGFSQNGEAEKALAMFFQM 287
             +++   + G  ++AL     M
Sbjct: 561 ACVVDILGRAGHLQRALQFIEAM 583


>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
 gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
          Length = 578

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 199/559 (35%), Positives = 313/559 (55%), Gaps = 56/559 (10%)

Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV------EYDAFVRVHLADMY 174
            RL + P R         +  L  LSLG     ++  S +      +++A +R      +
Sbjct: 33  FRLPISPAR-------SKLLELYALSLGNLSFAILTFSQIRTPSTNDWNAIIR-----GF 80

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-- 232
           +Q      AF  +     K++    L  + ++  C+++    +++++   + +K   +  
Sbjct: 81  IQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADA 140

Query: 233 --WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
               +L+D + + G++  A ++F++M ++ + SW A+I+GF+Q  +  +AL++F +M   
Sbjct: 141 LLGTTLLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEID 200

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G + N+ +V+ ALSACA++G  + G ++H YI    F +   +   ++DMYAKCG ++ A
Sbjct: 201 GFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMYAKCGFVDKA 260

Query: 351 SLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
            LVF      KD++TW  MI   A+HG   +A++ F+KM  SG  PD   +LA+L AC +
Sbjct: 261 YLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNH 320

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--NSQNSFT------ 461
            G V+     F+SM  +  ++P+VKH+  VV+LL R G+  + Y   NS  +        
Sbjct: 321 GGLVEEGFRLFNSME-NCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPTVPDIVLWQ 379

Query: 462 --------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                               KL+++   H   +VLLSN+YAA  RW DV RVR  M+ R 
Sbjct: 380 TLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVLLSNVYAARERWADVGRVREAMKNRD 439

Query: 502 IKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
           +KK PG SYIE NG +H+F      H+  +EI++KL++I    +E GY+  T +VLH+I 
Sbjct: 440 VKKVPGLSYIEGNGVIHKFYNADKSHESWREIYAKLDEIRFRVKEYGYVAETSFVLHDIG 499

Query: 560 EE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           EE KE  LG HSEKLA+AFGLI T+ GT I+++K L ICGDCH ++K  SKI  REI++R
Sbjct: 500 EEDKENVLGHHSEKLAVAFGLISTSEGTPIQVIKNLRICGDCHFVIKLISKIYDREIIVR 559

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D  RFH FK+G CSCRDYW
Sbjct: 560 DRVRFHRFKEGFCSCRDYW 578



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 179/405 (44%), Gaps = 52/405 (12%)

Query: 43  STKQLRQIHAQIILHNLF--ASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHIFNV 99
           S    +Q+HA +     F    S   ++L+   +L   ++ +A+  F      + + +N 
Sbjct: 16  SLPHTKQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQIRTPSTNDWNA 75

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +IRG  ++ +  +  + +  M+  S + + LT  FV K+ A +        +H  IV+ G
Sbjct: 76  IIRGFIQSPNPTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKG 135

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING----------- 208
              DA +   L D+Y ++G+   A KVFDE  +++    +  WN LI+G           
Sbjct: 136 FIADALLGTTLLDVYAKVGEIDSAEKVFDEMVKRD----IASWNALISGFAQGSKPTEAL 191

Query: 209 ------------------------CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGF 240
                                   C+++G  ++  ++ G +  +    N      +ID +
Sbjct: 192 SLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCNVVIDMY 251

Query: 241 MRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
            + G + KA  +FE M   K +V+W  MI  F+ +GE  KAL +F +M  +GV  +D + 
Sbjct: 252 AKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSY 311

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGE 356
           ++ L AC   G +E G R+ N  S  + G+K  +    ++VD+  + G + EA  +V   
Sbjct: 312 LAVLCACNHGGLVEEGFRLFN--SMENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSM 369

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
               D++ W  ++     H   E A    +K++  G+   G   L
Sbjct: 370 PTVPDIVLWQTLLGASRTHRNVEIAETVSRKLVEMGSNHCGDFVL 414


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 210/635 (33%), Positives = 324/635 (51%), Gaps = 47/635 (7%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           + LR +H++IIL +L  +S +  +L+ + +  K +  A  +FD    +N+ I NV+IR  
Sbjct: 56  RTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY 115

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             N  +   +  F  M   +VRP+  T+P V K+ +    + +GR +H    K G+    
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV   L  MY + G    A  V DE   ++    V+ WN L+ G ++      A+E+   
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRD----VVSWNSLVVGYAQNQRFDDALEVCRE 231

Query: 225 MPKKNVA----SWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           M    ++    +  SL+         ++    ++F +M +K +VSW  MI  + +N    
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ ++ +M   G   +  ++ S L AC    AL  G ++H YI          +  AL+
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMYAKCG +E A  VF   K +D+++WTAMI      GR   A+  F K+  SG  PD  
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458
            F+  L AC ++G ++   + F  M   Y I P ++H   +V+LL R G+  + Y+  Q+
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471

Query: 459 ----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                       +  KL QL P+    YVLLSNIYA  GRW++V
Sbjct: 472 MSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEV 531

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
             +R +M+ + +KK+PG S +EVN  +H F  G   H  + EI+ +L+ ++   +E GY+
Sbjct: 532 TNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYV 591

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQT-----TPGTTIKIVKKLTICGDCHS 602
           P +E  LH+++EE KE  L  HSEKLA+ F L+ T         TI+I K L ICGDCH 
Sbjct: 592 PDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHV 651

Query: 603 LMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             K  S+I+ REI++RDT RFH F+ G CSC DYW
Sbjct: 652 AAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  351 bits (900), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 221/650 (34%), Positives = 335/650 (51%), Gaps = 91/650 (14%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSI 85
           I E+H  +L H+       +Q+HA I  +NL  SS + T L+   +    I    Y   +
Sbjct: 16  IIESHCTTLNHA-------KQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLL 68

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F      N  +++ LIR  A N  F   I  +  ML  +V P   T+       A  SLL
Sbjct: 69  FSQVHSPNPFLYSALIRAYARNGPFHHSIRLYTSMLNNNVSPVSFTFS------ALFSLL 122

Query: 146 ---SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
              SLG  LH           AF+   + D+YV                           
Sbjct: 123 KNPSLGSQLH---------LHAFLFGFVNDLYVG-------------------------- 147

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N +I+   K G L  A ++F  MP ++V +W  LI  + R GD+  A ELF  +P K +V
Sbjct: 148 NTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMV 207

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +WT+M+ G+SQN   +KAL  F +M +AGV  ++ T+V A+SACA++G       +    
Sbjct: 208 AWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIREIA 267

Query: 323 SCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             + FG  G+   +G+AL+DMY+KCGN+E A  VF   KE ++ ++++MI G A+HGR  
Sbjct: 268 ESSRFG-SGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGRAR 326

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
            AI+ F +M+ +G +P+   F+ + TAC ++G V+     F +M+  Y + P+  H+  +
Sbjct: 327 SAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACM 386

Query: 440 VNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHP 471
            +LL R G   +  Q  Q                             +   L +L+P + 
Sbjct: 387 ADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIASRSLFELEPDNL 446

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV-NGHVHRFEAGG--HKLA 528
            +Y+LLS  YA   +W DV+RVR LM+ + ++K+PG S++E  NG +H F AG   H   
Sbjct: 447 GNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGIIHEFFAGDVKHPEI 506

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTT 587
            EI   L+D++   +  GY P    V ++I +E K   L  HSEKLALA+GL+ T  G+T
Sbjct: 507 NEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSHSEKLALAYGLLSTDAGST 566

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           IKI+K L IC DCH +M  ASK++ R+I++RD  RFH+F +G CSC ++W
Sbjct: 567 IKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNGACSCNNFW 616


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/493 (38%), Positives = 286/493 (58%), Gaps = 39/493 (7%)

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
           Q+ K R  F +    P KN    V+ WN +I+G  + G L  A++LF   P K+V +W +
Sbjct: 84  QMDKARDLFLIM---PTKN----VVTWNAMISGYVECGDLDSALKLFEKAPFKSVVAWTA 136

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           +I G+M+ G +  A  LFE+MPEK +V+W AMI G+ +N  AE  + +F  M+  G++ N
Sbjct: 137 MITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPN 196

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+ SAL  C+++ AL+ G +VH  +  +        GT+L+ MY KCG +E    +F 
Sbjct: 197 SSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFV 256

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +   +D++TW AMI G A HG  ++A+  F +M+  G +PD   F+A+L AC ++G   L
Sbjct: 257 QVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNHAGFTDL 316

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------- 452
            + +F SM  DY +     H+T +V+LL R G+  +                        
Sbjct: 317 GVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGAC 376

Query: 453 --YQNSQNS---FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
             ++N++ +     KLL L P   + YV L+N+YAA  RW  VARVR  M+   + K PG
Sbjct: 377 RIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARVRKSMKSCKVVKTPG 436

Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
           +S+IEV    H+F +G   H     IH KL+++    +  GY+P  E+ LH++ EE KE+
Sbjct: 437 YSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDLEFALHDVGEEQKEQ 496

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            L  HSEKLA+A+GLI+  PGT I++ K L +CGDCH  +KY S+I +REI++RD TRFH
Sbjct: 497 LLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQIERREIIVRDTTRFH 556

Query: 624 YFKDGTCSCRDYW 636
           +FKDG CSC DYW
Sbjct: 557 HFKDGHCSCADYW 569



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 111/213 (52%), Gaps = 11/213 (5%)

Query: 197 ESVLLWNVLINGCSKI-GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
           ++ + WN ++ G SK  G L++A ELF  +P+ +  S+ +++  ++R  ++++A   FE 
Sbjct: 4   KTTVTWNSVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFED 63

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MP K   SW  MI GF+QN + +KA  +F  M    V     T  + +S   + G L++ 
Sbjct: 64  MPIKDTPSWNTMITGFAQNQQMDKARDLFLIMPTKNV----VTWNAMISGYVECGDLDSA 119

Query: 316 VRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           +++           K  +  TA++  Y K G I  A  +F +  EK+L+TW AMI G   
Sbjct: 120 LKLFEKAP-----FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIE 174

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + R E  ++ F+ M+  G +P+ +   + L  C
Sbjct: 175 NHRAEDGVKLFRTMVGFGIQPNSSTLSSALLGC 207



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 85/183 (46%), Gaps = 5/183 (2%)

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
           F S    T +I+       I  A  +F+    KNL  +N +I G  EN   +  +  F  
Sbjct: 128 FKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRT 187

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   ++PN  T        + LS L LGR +H L+ KS +  D      L  MY + G 
Sbjct: 188 MVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGV 247

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLID 238
               +K+F + P ++    V+ WN +I+G ++ G  +KA+ LF  M +K +   W++ + 
Sbjct: 248 LEDGWKLFVQVPRRD----VVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVA 303

Query: 239 GFM 241
             M
Sbjct: 304 VLM 306


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 212/674 (31%), Positives = 343/674 (50%), Gaps = 90/674 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA  +      S  I T +     L K +  +  +   F  ++L  +N ++  L +N
Sbjct: 222 KQVHAYGLRKGELNSFIINTLVAMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFV 166
                 + +   M+   V P+  T   V  + + L +L  G+ LH   +K+G ++ ++FV
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
              L DMY    +     +VFD   ++     + LWN +I G S+  + ++A+ LF    
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRK----IGLWNAMIAGYSQNEHDKEALLLFIGME 396

Query: 223 -------------GMMP----------KKNVASWV-------------SLIDGFMRKGDL 246
                        G++P          K+ +  +V             +L+D + R G +
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-----------AGVRAN 295
             A  +F +M ++ +V+W  MI G+  +   E AL +  +M +             ++ N
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+++ L +CA + AL  G  +H Y   N+     A+G+ALVDMYAKCG ++ +  VF 
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +  +K+++TW  +I    +HG  ++AI   + MM  G +P+   F+++  AC +SG V  
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NSQNSFTKLL-- 464
            L  F  M+ DY +EPS  H+  VV+LL R G+  + YQ         N   +++ LL  
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696

Query: 465 ------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                             QL+P   S YVLL+NIY++ G W     VR  M+ + ++K+P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE 564
           G S+IE    VH+F AG   H  ++++   LE +    R++GY+P T  VLHN++E+++E
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816

Query: 565 ALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
            L C HSEKLA+AFG++ T+PGT I++ K L +C DCH   K+ SKI  REI+LRD  RF
Sbjct: 817 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 876

Query: 623 HYFKDGTCSCRDYW 636
           H FK+GTCSC DYW
Sbjct: 877 HRFKNGTCSCGDYW 890



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 156/356 (43%), Gaps = 48/356 (13%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           L+R    ++  +  +  +V M+ L ++P+   +P + K+VA L  + LG+ +H  + K G
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 160 VEYDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
              D+    + L ++Y + G     +KVFD   E+N+    + WN LI+          A
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ----VSWNSLISSLCSFEKWEMA 183

Query: 219 VELFGMMPKKNV-------------ASWVSLIDGFM----------RKGDLK-------- 247
           +E F  M  +NV              S + + +G M          RKG+L         
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 248 ----KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
               K G+      L      + +V+W  +++   QN +  +AL    +M+  GV  ++F
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           T+ S L AC+ +  L  G  +H Y   N        +G+ALVDMY  C  + +   VF  
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSG 411
             ++ +  W AMI G + +   ++A+  F  M  S G   + T    ++ AC  SG
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W  ++    ++    +A+  +  M+  G++ +++   + L A A +  +E G ++H ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 324 CNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +G+    +   LV++Y KCG+  A   VF    E++ ++W ++I  L    ++E A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC 407
           + F+ M+    EP     ++++TAC
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTAC 209



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           + S KP N+IT   I+    + ++  + ++IHA  I +NL     + + L+   +    +
Sbjct: 510 RVSLKP-NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCL 568

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
             +  +FD    KN+  +NV+I     + + Q  I     M+   V+PN +T+  V  + 
Sbjct: 569 QMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 628

Query: 140 ASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE---KNK 195
           +   ++  G R  + +    GVE  +     + D+  + G+ + A+++ +  P    K  
Sbjct: 629 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 688

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-WVSLIDGFMRKGDLKKAGELFE 254
           + S LL    I+   +IG +  A  L  + P  NVAS +V L + +   G   KA E+  
Sbjct: 689 AWSSLLGASRIHNNLEIGEI-AAQNLIQLEP--NVASHYVLLANIYSSAGLWDKATEVRR 745

Query: 255 QMPEKGV 261
            M E+GV
Sbjct: 746 NMKEQGV 752


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 227/671 (33%), Positives = 342/671 (50%), Gaps = 75/671 (11%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F+  ++   P+ +I ++  P +         L++       L+QIHAQ++   L +++ +
Sbjct: 49  FSFCSSNTFPSISIPTNPIPIDLPNPQTFSLLLNQRPKLSPLQQIHAQVVTQALSSNASL 108

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKN--LHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
           T  LI      K+   A  +FDH+   +  + ++NV+IR  ++  + Q  I  F+ ML L
Sbjct: 109 TASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTYSKIRNSQEPIHLFLRMLTL 168

Query: 124 S----VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
                V P+  T+ FV  S +    L  G  +H ++VKSG E + +V             
Sbjct: 169 DGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGFESNLYVG------------ 216

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
                                  N +IN CS    +  A ++F  M +++V SW SL+ G
Sbjct: 217 -----------------------NSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGG 253

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFT 298
           + + G++ +A ELF  MP +  VSW  MI+GF   G   +AL  F  ML D  V  N+  
Sbjct: 254 YAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNPNEAV 313

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +V  LSACA +GAL+ G  +H YI          I TAL+DMYAKCG I+ AS VF    
Sbjct: 314 LVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGIC 373

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           ++D+L++T+MI GL+ HG  + A++ F +M+     P+    L +L  C +SG V+   +
Sbjct: 374 KRDVLSFTSMISGLSYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSS 433

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------------------QDSQGY 453
              +M   + I P ++H+   ++LL R G                           S+ +
Sbjct: 434 ILANMESLWGIAPKIEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIH 493

Query: 454 QN---SQNSFTKLLQLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
            N    +   + + QLK   H    VLLSN+YA+ GRW+ V  +R LM  R  +  PG S
Sbjct: 494 HNVNLGEQIISHIGQLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCS 553

Query: 510 YIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEAL 566
           +IEVNG VH F      H    EI +KL +I+    + GY   T  V  ++ +EEKE+A+
Sbjct: 554 WIEVNGLVHEFRVADQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAV 613

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
             HSEKLA+AFGL+ T PGT I+IVK L  C DCHS +K  S++  REIV+RD +RFH F
Sbjct: 614 AWHSEKLAIAFGLMSTEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTF 673

Query: 626 KDGTCSCRDYW 636
            +G CSC+D+W
Sbjct: 674 IEGDCSCKDFW 684


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 212/674 (31%), Positives = 343/674 (50%), Gaps = 90/674 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA  +      S  I T +     L K +  +  +   F  ++L  +N ++  L +N
Sbjct: 135 KQVHAYGLRKGELNSFIINTLVAMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQN 193

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFV 166
                 + +   M+   V P+  T   V  + + L +L  G+ LH   +K+G ++ ++FV
Sbjct: 194 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 253

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
              L DMY    +     +VFD   ++     + LWN +I G S+  + ++A+ LF    
Sbjct: 254 GSALVDMYCNCKQVLSGRRVFDGMFDRK----IGLWNAMIAGYSQNEHDKEALLLFIGME 309

Query: 223 -------------GMMP----------KKNVASWV-------------SLIDGFMRKGDL 246
                        G++P          K+ +  +V             +L+D + R G +
Sbjct: 310 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 369

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-----------AGVRAN 295
             A  +F +M ++ +V+W  MI G+  +   E AL +  +M +             ++ N
Sbjct: 370 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 429

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+++ L +CA + AL  G  +H Y   N+     A+G+ALVDMYAKCG ++ +  VF 
Sbjct: 430 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 489

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +  +K+++TW  +I    +HG  ++AI   + MM  G +P+   F+++  AC +SG V  
Sbjct: 490 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 549

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NSQNSFTKLL-- 464
            L  F  M+ DY +EPS  H+  VV+LL R G+  + YQ         N   +++ LL  
Sbjct: 550 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 609

Query: 465 ------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                             QL+P   S YVLL+NIY++ G W     VR  M+ + ++K+P
Sbjct: 610 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 669

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE 564
           G S+IE    VH+F AG   H  ++++   LE +    R++GY+P T  VLHN++E+++E
Sbjct: 670 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 729

Query: 565 ALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
            L C HSEKLA+AFG++ T+PGT I++ K L +C DCH   K+ SKI  REI+LRD  RF
Sbjct: 730 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 789

Query: 623 HYFKDGTCSCRDYW 636
           H FK+GTCSC DYW
Sbjct: 790 HRFKNGTCSCGDYW 803



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 48/336 (14%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH-LADMYVQLG 178
           M+ L ++P+   +P + K+VA L  + LG+ +H  + K G   D+    + L ++Y + G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------- 230
                +KVFD   E+N+    + WN LI+          A+E F  M  +NV        
Sbjct: 61  DFGAVYKVFDRISERNQ----VSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLV 116

Query: 231 -----ASWVSLIDGFM----------RKGDLK------------KAGE------LFEQMP 257
                 S + + +G M          RKG+L             K G+      L     
Sbjct: 117 SVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFG 176

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            + +V+W  +++   QN +  +AL    +M+  GV  ++FT+ S L AC+ +  L  G  
Sbjct: 177 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236

Query: 318 VHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +H Y   N        +G+ALVDMY  C  + +   VF    ++ +  W AMI G + + 
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 296

Query: 377 RYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSG 411
             ++A+  F  M  S G   + T    ++ AC  SG
Sbjct: 297 HDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 332



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           + S KP N+IT   I+    + ++  + ++IHA  I +NL     + + L+   +    +
Sbjct: 423 RVSLKP-NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCL 481

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
             +  +FD    KN+  +NV+I     + + Q  I     M+   V+PN +T+  V  + 
Sbjct: 482 QMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 541

Query: 140 ASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE---KNK 195
           +   ++  G R  + +    GVE  +     + D+  + G+ + A+++ +  P    K  
Sbjct: 542 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 601

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-WVSLIDGFMRKGDLKKAGELFE 254
           + S LL    I+   +IG +  A  L  + P  NVAS +V L + +   G   KA E+  
Sbjct: 602 AWSSLLGASRIHNNLEIGEI-AAQNLIQLEP--NVASHYVLLANIYSSAGLWDKATEVRR 658

Query: 255 QMPEKGV 261
            M E+GV
Sbjct: 659 NMKEQGV 665


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 217/622 (34%), Positives = 333/622 (53%), Gaps = 69/622 (11%)

Query: 58  NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
           N+ +S+R+ T  I S  L+     AL +F+  T K    +N ++ G + N   +  ++  
Sbjct: 4   NVISSNRVITNHIRSGDLNS----ALRVFESMTVKTTVTWNSMLAGYS-NRRGKIKVARQ 58

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA--FVRVHLADM-- 173
           +F        +R+  P          + S    L C +  + VE     F ++ + D   
Sbjct: 59  LF--------DRIPEP---------DIFSYNIMLACYLHNADVESARLFFDQMPVKDTAS 101

Query: 174 -------YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
                  + Q G    A ++F   P +N     + WN +I+G  + G L  A +LF + P
Sbjct: 102 WNTMISGFSQNGMMDQARELFLVMPVRNS----VSWNAMISGYVESGDLDLAKQLFEVAP 157

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            ++V +W ++I GFM+ G ++ A + FE+MP K +V+W AMI G+ +N +AE  L +F +
Sbjct: 158 VRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKR 217

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M+++G R N  ++ S L  C+ + AL+ G +VH  I  +        GT+L+ MY KCG+
Sbjct: 218 MVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGD 277

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +E A  +F    +KD++TW AMI G A HG  E+A+  F KM   G +PD   F+A+L+A
Sbjct: 278 LEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSA 337

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------- 452
           C ++G V L + +F+SM  DY +E    H+T VV+LL R G+  +               
Sbjct: 338 CNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHSA 397

Query: 453 -----------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                      ++N   ++ +   LL L P+  + YV L+N+YAA  RW  VA VR  M+
Sbjct: 398 IFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHVAMVRRSMK 457

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
              + K PG+S+IEV   VH F +G   H     IH KL ++    R  GY+P  E+ LH
Sbjct: 458 DNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYVPDLEYALH 517

Query: 557 NIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           ++ EE K++ L  HSEKLA+A+GLI+   GT I++ K L +CGDCHS  KY S I  R I
Sbjct: 518 DVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYISAIEGRVI 577

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
           ++RD TRFH+F+ G CSC DYW
Sbjct: 578 IVRDTTRFHHFRQGECSCGDYW 599


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 212/674 (31%), Positives = 343/674 (50%), Gaps = 90/674 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA  +      S  I T +     L K +  +  +   F  ++L  +N ++  L +N
Sbjct: 222 KQVHAYGLRKGELNSFIINTLVAMYGKLGK-LASSKVLLGSFGGRDLVTWNTVLSSLCQN 280

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFV 166
                 + +   M+   V P+  T   V  + + L +L  G+ LH   +K+G ++ ++FV
Sbjct: 281 EQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
              L DMY    +     +VFD   ++     + LWN +I G S+  + ++A+ LF    
Sbjct: 341 GSALVDMYCNCKQVLSGRRVFDGMFDRK----IGLWNAMIAGYSQNEHDKEALLLFIGME 396

Query: 223 -------------GMMP----------KKNVASWV-------------SLIDGFMRKGDL 246
                        G++P          K+ +  +V             +L+D + R G +
Sbjct: 397 ESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKI 456

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-----------AGVRAN 295
             A  +F +M ++ +V+W  MI G+  +   E AL +  +M +             ++ N
Sbjct: 457 DIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPN 516

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+++ L +CA + AL  G  +H Y   N+     A+G+ALVDMYAKCG ++ +  VF 
Sbjct: 517 SITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFD 576

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +  +K+++TW  +I    +HG  ++AI   + MM  G +P+   F+++  AC +SG V  
Sbjct: 577 QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDE 636

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NSQNSFTKLL-- 464
            L  F  M+ DY +EPS  H+  VV+LL R G+  + YQ         N   +++ LL  
Sbjct: 637 GLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGA 696

Query: 465 ------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                             QL+P   S YVLL+NIY++ G W     VR  M+ + ++K+P
Sbjct: 697 SRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE 564
           G S+IE    VH+F AG   H  ++++   LE +    R++GY+P T  VLHN++E+++E
Sbjct: 757 GCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKE 816

Query: 565 ALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
            L C HSEKLA+AFG++ T+PGT I++ K L +C DCH   K+ SKI  REI+LRD  RF
Sbjct: 817 ILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRF 876

Query: 623 HYFKDGTCSCRDYW 636
           H FK+GTCSC DYW
Sbjct: 877 HRFKNGTCSCGDYW 890



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 156/356 (43%), Gaps = 48/356 (13%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           L+R    ++  +  +  +V M+ L ++P+   +P + K+VA L  + LG+ +H  + K G
Sbjct: 68  LLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFG 127

Query: 160 VEYDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
              D+    + L ++Y + G     +KVFD   E+N+    + WN LI+          A
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ----VSWNSLISSLCSFEKWEMA 183

Query: 219 VELFGMMPKKNV-------------ASWVSLIDGFM----------RKGDLK-------- 247
           +E F  M  +NV              S + + +G M          RKG+L         
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 248 ----KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
               K G+      L      + +V+W  +++   QN +  +AL    +M+  GV  ++F
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           T+ S L AC+ +  L  G  +H Y   N        +G+ALVDMY  C  + +   VF  
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSG 411
             ++ +  W AMI G + +   ++A+  F  M  S G   + T    ++ AC  SG
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 75/145 (51%), Gaps = 1/145 (0%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W  ++    ++    +A+  +  M+  G++ +++   + L A A +  +E G ++H ++ 
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124

Query: 324 CNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +G+    +   LV++Y KCG+  A   VF    E++ ++W ++I  L    ++E A+
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184

Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC 407
           + F+ M+    EP     ++++TAC
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTAC 209



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 114/247 (46%), Gaps = 9/247 (3%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           + S KP N+IT   I+    + ++  + ++IHA  I +NL     + + L+   +    +
Sbjct: 510 RVSLKP-NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCL 568

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
             +  +FD    KN+  +NV+I     + + Q  I     M+   V+PN +T+  V  + 
Sbjct: 569 QMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 628

Query: 140 ASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE---KNK 195
           +   ++  G R  + +    GVE  +     + D+  + G+ + A+++ +  P    K  
Sbjct: 629 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 688

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-WVSLIDGFMRKGDLKKAGELFE 254
           + S LL    I+   +IG +  A  L  + P  NVAS +V L + +   G   KA E+  
Sbjct: 689 AWSSLLGASRIHNNLEIGEI-AAQNLIQLEP--NVASHYVLLANIYSSAGLWDKATEVRR 745

Query: 255 QMPEKGV 261
            M E+GV
Sbjct: 746 NMKEQGV 752


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 204/590 (34%), Positives = 311/590 (52%), Gaps = 63/590 (10%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A S+F+    K   ++N +I G  ++         F  M+   V  +  T+  V  +
Sbjct: 250 VNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSA 309

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A+      G+ +H  I++    +                            PE     +
Sbjct: 310 CANAGFFVHGKSVHGQIIRLQPNF---------------------------VPEA----A 338

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           + + N L+   SK G +  A  +F  M  K+V SW +++ G++  G L KA E+F+ MP 
Sbjct: 339 LPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPY 398

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K  +SW  M++G+   G +E AL +F QM    V+  D+T   A++AC ++GAL+ G ++
Sbjct: 399 KNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQL 458

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H ++    F    + G AL+ MYAKCG +  A LVF      D ++W AMI  L  HG  
Sbjct: 459 HAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGHG 518

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +A++ F +M+  G +PD   FL ILTAC ++G V    ++F+SM+ D+ I P   H+  
Sbjct: 519 REALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYAR 578

Query: 439 VVNLLSRVGQDSQGYQ-----------------------NSQNSF-----TKLLQLKPKH 470
           +++LL R G+  +                          N    F      +L ++ P+H
Sbjct: 579 LIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQH 638

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLA 528
             +Y+LLSN Y+A GRW D ARVR LM+ R +KK+PG S+IEV   +H F  G   H  A
Sbjct: 639 DGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEA 698

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTT 587
           +E++  LE I A  R+ GY+P T++VLH+++  EKE  L  HSEKLA+ FGL++  PG T
Sbjct: 699 QEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGAT 758

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + ++K L ICGDCH+ M + SK   REIV+RD  RFH+FKDG CSC +YW
Sbjct: 759 VTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 170/368 (46%), Gaps = 45/368 (12%)

Query: 66  TTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFML-R 122
            T L+++ +    +  A + FD   P  ++  + N ++   A  S     +S F  +L  
Sbjct: 97  ATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 156

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGR--GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
            S+RP+  ++  +  +V  +  L+      LHC ++KSG      V   L  +Y++    
Sbjct: 157 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC--- 213

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
                   +TPE +       W+              A ++   MP K+  +W +++ G+
Sbjct: 214 --------DTPEAS-------WD--------------ARKVLDEMPDKDDLTWTTMVVGY 244

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
           +R+GD+  A  +FE++  K  V W AMI+G+ Q+G    A  +F +M+   V  ++FT  
Sbjct: 245 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 304

Query: 301 SALSACAKVGALEAGVRVHNYIS--CNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGE 356
           S LSACA  G    G  VH  I     +F  + A  +  ALV +Y+K G I  A  +F  
Sbjct: 305 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 364

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              KD+++W  ++ G    G  ++A++ FK M Y     +   ++ +++   + G  + A
Sbjct: 365 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDA 420

Query: 417 LNFFDSMR 424
           L  F+ MR
Sbjct: 421 LKLFNQMR 428


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 212/677 (31%), Positives = 353/677 (52%), Gaps = 76/677 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
            H+I     +   ++ +Q+HA +I       + +T  L++  S    +D+AL +FD    
Sbjct: 9   AHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQ 68

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +NL  +  +I GL++NS F   I  F  M      P +  +    ++ ASL  + +G+ +
Sbjct: 69  RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HCL +K G+  + FV  +L DMY + G    A KVF+E P K++    + W  +I+G SK
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSK 184

Query: 212 IGYLRKAVELFGMMPKKNV---------------------------ASWV---------- 234
           IG   +A+  F  M  + V                           +S V          
Sbjct: 185 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 244

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
             +L D + + GD++ A  +F    E + VVS+T +I+G+ +  + EK L++F ++   G
Sbjct: 245 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 304

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           +  N+FT  S + ACA   ALE G ++H  +   +F     + + LVDMY KCG +E A 
Sbjct: 305 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 364

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
             F E  +   + W +++     HG  + AI+ F++M+  G +P+   F+++LT C ++G
Sbjct: 365 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 424

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN----SQNSF----- 460
            V+  L++F SM   Y + P  +H++ V++LL R G  ++++ + N      N+F     
Sbjct: 425 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 484

Query: 461 -----------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                             KL++L+PK+  + VLLSNIYA E +W+DV  VR  M+  ++K
Sbjct: 485 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 544

Query: 504 KDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K PG+S+++V    H F  E   H     I+ KL+ ++   +  GY+P T+ V  ++ + 
Sbjct: 545 KLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDS 604

Query: 562 -KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
            KE+ L  HSE++A+AF LI    G  I + K L +C DCHS +K+ SK++ R+I++RD 
Sbjct: 605 MKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 664

Query: 620 TRFHYFKDGTCSCRDYW 636
           +RFH+F DG+CSC DYW
Sbjct: 665 SRFHHFTDGSCSCGDYW 681



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 107/271 (39%), Gaps = 38/271 (14%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + +I    +  + +Q  Q+HAQ++  N      +++ L+        ++ A+  F
Sbjct: 308 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 367

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D         +N L+    ++   +  I  F  M+   V+PN +T+         +SLL+
Sbjct: 368 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF---------ISLLT 418

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
                H  +V+ G++Y           +  + KT G        P +        ++ +I
Sbjct: 419 GCS--HAGLVEEGLDY-----------FYSMDKTYGV------VPGEEH------YSCVI 453

Query: 207 NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL---KKAGELFEQMPEKGVV 262
           +   + G L++A E    MP + N   W S +      GD    K A E   ++  K   
Sbjct: 454 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 513

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           +   + N ++   + E   ++  +M D  V+
Sbjct: 514 ALVLLSNIYANERQWEDVRSVRMRMRDGNVK 544


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 216/687 (31%), Positives = 356/687 (51%), Gaps = 89/687 (12%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N++T   ++S++ S       R++HAQ +     ++  +   L++  +    ++ A  +F
Sbjct: 204 NSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVF 263

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHF------VFMLRLSVRPNRLTYPFVSKSVA 140
                +++  +N L+ GL  N H    +  F      + ML  S      TY  V K  A
Sbjct: 264 CGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQS------TYATVIKLCA 317

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           ++  L L R LH  ++K G      V   L D Y + G+   A  +F      + S++V+
Sbjct: 318 NIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIF---LLMSGSQNVV 374

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------------------- 232
            W  +INGC + G +  A  LF  M +  VA                             
Sbjct: 375 SWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTN 434

Query: 233 -------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L+  + +  + ++A  +F+ + +K VVSW+AM+  ++Q G+++ A  +F 
Sbjct: 435 YECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFI 494

Query: 286 QMLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYI---SCNDFGLKGAIGTALVDMY 341
           +M   G++ N+FT+ S + ACA   A ++ G + H       C+D      + +ALV MY
Sbjct: 495 KMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRCHD---ALCVSSALVSMY 551

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           A+ G+IE+A  +F    ++DL++W +M+ G A HG  ++A+  F++M   G E DG  FL
Sbjct: 552 ARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFL 611

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------- 452
           +++  C ++G V+    +FDSM  DY I P+++H+  +V+L SR G+  +          
Sbjct: 612 SVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSF 671

Query: 453 ----------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                           ++N    + +  KLL L+P   ++YVLLSNIY+A G+WK+   V
Sbjct: 672 PAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEV 731

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R LM  + +KK+ G S+I++   VH F A    H L+++I++KL  +    +++GY P T
Sbjct: 732 RKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDT 791

Query: 552 EWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
            + LH + EE++EA L  HSE+LALAFGLI T PG  + I K L +CGDCH+++K  SKI
Sbjct: 792 SFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKI 851

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
             REIV+RD +RFH+F  G CSC D+W
Sbjct: 852 EDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 124/264 (46%), Gaps = 22/264 (8%)

Query: 163 DAFVRVHLA-DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
           D F+ VH      V  G   G  KV    P++      +L   L   C + G+ R     
Sbjct: 88  DHFLDVHRCHGGRVGGGALVGVLKVCGSVPDR------VLGKQLHGLCIRCGHDRG---- 137

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                  +V    SL+D +M+   +    ++FE MP++ VV+WT+++ G+ Q+G     +
Sbjct: 138 -------DVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVM 190

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVD 339
            +FF+M   GV  N  T  S LS  A  G ++ G RVH       FG      +  +L++
Sbjct: 191 ELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH--AQSVKFGCCSTVFVCNSLMN 248

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAKCG +E A +VF   + +D+++W  ++ GL ++G   +A+Q F     S T    + 
Sbjct: 249 MYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQST 308

Query: 400 FLAILTACWYSGQVKLALNFFDSM 423
           +  ++  C    Q+ LA     S+
Sbjct: 309 YATVIKLCANIKQLGLARQLHSSV 332



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/313 (25%), Positives = 134/313 (42%), Gaps = 45/313 (14%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           V K   S+    LG+ LH L ++ G +  D  V   L DMY++        KVF+  P++
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----NVASWV--------- 234
           N    V+ W  L+ G  + G L   +ELF      G+ P      +V S V         
Sbjct: 169 N----VVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLG 224

Query: 235 --------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                               SL++ + + G +++A  +F  M  + +VSW  ++ G   N
Sbjct: 225 RRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLN 284

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G   +AL +F     +       T  + +  CA +  L    ++H+ +    F   G + 
Sbjct: 285 GHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVM 344

Query: 335 TALVDMYAKCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
           TAL+D Y+K G +  A  +F   +  +++++WTAMI G   +G    A   F +M   G 
Sbjct: 345 TALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGV 404

Query: 394 EPDGTVFLAILTA 406
            P+   +  ILTA
Sbjct: 405 APNDFTYSTILTA 417


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 213/676 (31%), Positives = 351/676 (51%), Gaps = 81/676 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++ L   +   K+ R+IH  II +   ++  + T ++S  +  + ID A  +F+    K+
Sbjct: 151 LLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKD 210

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           L  +  L+ G A+N H +  +   + M     +P+ +T   +  +VA +  L +GR +H 
Sbjct: 211 LVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHG 270

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
              +SG E    V   L DMY + G  R A  VF    +  +S++V+ WN +I+GC++ G
Sbjct: 271 YAFRSGFESLVNVTNALLDMYFKCGSARIARLVF----KGMRSKTVVSWNTMIDGCAQNG 326

Query: 214 YLRKAVELF------GMMPKK---------------------------------NVASWV 234
              +A   F      G +P +                                 NV+   
Sbjct: 327 ESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMN 386

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           SLI  + +   +  A  +F  + EK  V+W AMI G++QNG  ++AL +F  M   G++ 
Sbjct: 387 SLISMYSKCKRVDIAASIFNNL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKL 445

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + FT+V  ++A A          +H     +C D  +   + TALVDMYAKCG I+ A  
Sbjct: 446 DCFTLVGVITALADFSVNRQAKWIHGLAVRACMDNNV--FVSTALVDMYAKCGAIKTARK 503

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F   +E+ ++TW AMI G   HG  ++ +  F +M     +P+   FL++++AC +SG 
Sbjct: 504 LFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGF 563

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------- 453
           V+  L  F SM+ DY++EP++ H++ +V+LL R GQ    +                   
Sbjct: 564 VEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAML 623

Query: 454 ---------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    +  + +  KL +L P     +VLL+NIYA+   W  VA+VRT M+ + + K
Sbjct: 624 GACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHK 683

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE- 561
            PG S++E+   +H F +G   H  +K+I++ LE +    +  GY+P  + + H+++E+ 
Sbjct: 684 TPGCSWVELRNEIHTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSI-HDVEEDV 742

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           K++ L  HSE+LA+AFGL+ T+PGTT+ I K L +CGDCH   KY S ++ REI++RD  
Sbjct: 743 KKQLLSSHSERLAIAFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLR 802

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FK+G+CSC DYW
Sbjct: 803 RFHHFKNGSCSCGDYW 818



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/411 (27%), Positives = 192/411 (46%), Gaps = 44/411 (10%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           + L+ +  S K+L QI   II +  +      T++IS      S   A  +F+H   K  
Sbjct: 51  VVLLENCTSKKELYQILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLD 110

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            +++++++G A+NS     +  F+ M+   VR     Y  + +       L  GR +H L
Sbjct: 111 VLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGL 170

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           I+ +G E + FV   +  +Y +  +   A+K+F    E+ + + ++ W  L+ G ++ G+
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMF----ERMQHKDLVSWTTLVAGYAQNGH 226

Query: 215 LRKAVELFGMM----PKKNVASWVS----------------------------------- 235
            ++A++L   M     K +  + VS                                   
Sbjct: 227 AKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNA 286

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+D + + G  + A  +F+ M  K VVSW  MI+G +QNGE+E+A A F +MLD G    
Sbjct: 287 LLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPT 346

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T++  L ACA +G LE G  VH  +         ++  +L+ MY+KC  ++ A+ +F 
Sbjct: 347 RVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFN 406

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
              EK  +TW AMI G A +G  ++A+  F  M   G + D    + ++TA
Sbjct: 407 NL-EKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 200/549 (36%), Positives = 295/549 (53%), Gaps = 67/549 (12%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M    V P+  T  FV K+   LS +  G+ +H L  K G   + F              
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLF-------------- 46

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
                                L N+++N     G +  A+ LF  MP+++  +W  +I  
Sbjct: 47  ---------------------LQNMILNLYGLCGEMGDAMLLFEKMPQRDAVTWNIVIAQ 85

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
             ++GD+  A   F +MP K V SWT+MI+GF Q G+  +A+ +F ++ D  VR N+ TV
Sbjct: 86  LAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTV 145

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           VS L+ACA +G L+ G  VH Y + + F     +   L+DMY KCG +E A  VF E +E
Sbjct: 146 VSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEE 205

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           + +++W+AMI GLA+HG+ E+A+  F +M+  G +P+G  F+ +L AC + G +     F
Sbjct: 206 RTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRF 265

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------------ 455
           F SM  DY + P ++H+  VV+L SR G   + ++                         
Sbjct: 266 FASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHK 325

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               ++ +   L +L P +   YV++SNIYA   RW+D ARVR LM+ R +KK  GWS I
Sbjct: 326 NIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAARVRKLMKDRGVKKTSGWSSI 385

Query: 512 EVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGC 568
            VNG VH F AG   H  A++I    + ++   + +GY P T  VL +++E EKE+ L  
Sbjct: 386 TVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYR 445

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLA+ FGL+ T  GT I+I+K L +C DCH+ +K  S I  REI++RD  RFH F+D
Sbjct: 446 HSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISGIVSREIIVRDRNRFHCFRD 505

Query: 628 GTCSCRDYW 636
           G CSCRD+W
Sbjct: 506 GQCSCRDFW 514



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/271 (26%), Positives = 115/271 (42%), Gaps = 26/271 (9%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +I+  +    ID A   F     KN+  +  +I G  +       I  F+ +   +VRPN
Sbjct: 82  VIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRPN 141

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T   V  + A L  L LGR +H    KSG + +  V   L DMYV+ G    A +VF 
Sbjct: 142 EVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFY 201

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKG 244
           E  E+    +V+ W+ +I G +  G   +A+ LF  M     K N  +++ L+      G
Sbjct: 202 EMEER----TVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMG 257

Query: 245 DLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
            + +    F  M  + GV+     +  +++ FS+ G  E+A      M    ++ N    
Sbjct: 258 LIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSM---PIKPNGVV- 313

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLK 330
                     GAL  G +VH  I   +  +K
Sbjct: 314 ---------WGALLGGCKVHKNIDLAEEAIK 335


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 204/607 (33%), Positives = 327/607 (53%), Gaps = 45/607 (7%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L+S+ +   SI    + FD    ++   +N  I G + NS  Q  +  F  M R    P 
Sbjct: 95  LLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPT 154

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
             T   +  + A L  L  G+ +H  I+      + F+   L DMY + G+   A  +FD
Sbjct: 155 EYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFD 214

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMR 242
              +KN    ++ WN++I+G +K G   K + L       G MP +   S  ++I  + +
Sbjct: 215 CLTKKN----LVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMS--TIIAAYCQ 268

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G + +A  +F +  EK +V WTAM+ G+++NG  E AL +F +ML   +  + +T+ S 
Sbjct: 269 CGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSV 328

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           +S+CAK+ +L  G  VH             + +AL+DMY+KCG I+ A  VF     +++
Sbjct: 329 VSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNV 388

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++W AMI G A +G  + A++ F+ M+    +PD   F+ IL+AC +   ++    +FDS
Sbjct: 389 VSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDS 448

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------------------------- 454
           +   + + P++ H+  +VNLL R G+  Q                               
Sbjct: 449 ISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIV 508

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
           N++ +   L +L P     Y++LSN+YA+ GRWKDVA VR LM+ +++KK  G+S+IE++
Sbjct: 509 NAEVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEID 568

Query: 515 GHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSE 571
             VHRF  E   H  +++I+ KL  ++   +E+G+ P T  VLH++ E EK +++  HSE
Sbjct: 569 NEVHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSE 628

Query: 572 KLALAFGLIQTTPG-TTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           KLALAFGLI+   G + I+I+K + IC DCH  MK+AS+I  R+I+LRD+ RFH+F  G 
Sbjct: 629 KLALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGK 688

Query: 630 CSCRDYW 636
           CSC D W
Sbjct: 689 CSCNDNW 695



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/225 (33%), Positives = 117/225 (52%)

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            L N L++  +K G LR A  LF  M K++  SW +L+  + + G ++     F++MP +
Sbjct: 59  FLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR 118

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
             VS+   I GFS N   +++L +F +M   G    ++T+VS L+A A++  L  G ++H
Sbjct: 119 DSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIH 178

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             I   +F     I  AL DMYAKCG IE A  +F    +K+L++W  MI G A +G+ E
Sbjct: 179 GSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPE 238

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           + I    +M  SG  PD      I+ A    G+V  A   F   +
Sbjct: 239 KCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFK 283



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 106/265 (40%), Gaps = 30/265 (11%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H   ++ T + ++S      S    + +H + IL  L  +  +++ LI   S    ID A
Sbjct: 317 HIEPDSYTLSSVVSSCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDA 376

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
            S+F+    +N+  +N +I G A+N H +  +  F  ML+   +P+ +T+  +       
Sbjct: 377 RSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGI------- 429

Query: 143 SLLSLGRGLHCLIVKSGVEY-DAFVRV--------HLADMYVQLGKTRGAFKVFDETPEK 193
               L   LHC  ++ G EY D+            H A M   LG+T    +        
Sbjct: 430 ----LSACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNM 485

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
                 L+W+ L++ CS  G +  A      LF + P   V  ++ L + +   G  K  
Sbjct: 486 AHDPDFLIWSTLLSICSTKGDIVNAEVAARHLFELDPTIAVP-YIMLSNMYASMGRWKDV 544

Query: 250 GELFEQMPEKGV-----VSWTAMIN 269
             +   M  K V      SW  + N
Sbjct: 545 ASVRNLMKSKNVKKFAGFSWIEIDN 569


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 193/546 (35%), Positives = 308/546 (56%), Gaps = 68/546 (12%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           ++RP+      ++ + A L  L LGR LH   V S    D  V+  L DMY + G    A
Sbjct: 6   ALRPDHFVLASLASAAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDA 65

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
            KVFD                       IG              KN   W +L+ G+   
Sbjct: 66  RKVFD----------------------SIGV-------------KNGVVWTALVSGYASN 90

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSA 302
           G   +A +LF  MPE+G+ +WTA+I+GF + G    A+ +F +M   GVR +D F + + 
Sbjct: 91  GCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATV 150

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           +   A++ AL  G ++H +     F     +G ALVDMY+KC +I +A  VFG    +D+
Sbjct: 151 VGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDV 210

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++WT ++ G A HGR E+ +  + +M+ +G +P+   F+ ++ AC ++G V+     FDS
Sbjct: 211 VSWTTILVGEAQHGRVEEVLALYDRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDS 270

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------YQNSQNSF-------------- 460
           M+ +Y I+P ++H+T  ++LLSR G  S+         Y+  + S+              
Sbjct: 271 MKREYGIKPGLQHYTCYLDLLSRSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQ 330

Query: 461 ------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
                   LL+L+PK PS+Y+LLSN+YA   +W  VA+VR +M    I+K+PG+S+IE  
Sbjct: 331 MCLRVADNLLELRPKDPSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKEPGYSWIEAG 390

Query: 515 GHVHRFEAGGHKL--AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSE 571
                F AG   L   +EI   LE++++  R++GY+P T  V+H+++E EKE+ L  HSE
Sbjct: 391 RESRMFHAGEVPLDIGEEITRFLEELVSEMRKRGYVPDTSSVMHDLEENEKEQHLFLHSE 450

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           +LA+AFG++++ PG+ I++VK L +CGDCH++MK+ S+I+QR+I++RD +RFH+F+DG C
Sbjct: 451 RLAVAFGILKSPPGSVIRVVKNLRVCGDCHTVMKFISEIAQRKIIVRDASRFHHFEDGNC 510

Query: 631 SCRDYW 636
           SC ++W
Sbjct: 511 SCSEFW 516



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 70/140 (50%), Gaps = 8/140 (5%)

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
           D  +R + F + S  SA A++ +L  G ++H +   + +     + ++L+DMY KCG  E
Sbjct: 4   DDALRPDHFVLASLASAAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCKCGVPE 63

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF--LAILTA 406
            A  VF     K+ + WTA++ G A +G   +AI  F+ M      P+  +F   A+++ 
Sbjct: 64  DARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSM------PERGLFAWTALISG 117

Query: 407 CWYSGQVKLALNFFDSMRFD 426
              +G    A+  F  MR D
Sbjct: 118 FVKAGNNTGAVGLFVEMRRD 137


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 212/689 (30%), Positives = 338/689 (49%), Gaps = 78/689 (11%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S  +P N    + +++    S   +  RQ+H  ++             L+   S    I+
Sbjct: 199 SGERP-NEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIE 257

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            A ++F+     ++  +N  I G   + H    +   + M    + PN  T   V K+ A
Sbjct: 258 MAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACA 317

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
                +LGR +H  +VK+  ++D FV V L DMY + G    A KVFD  P ++    ++
Sbjct: 318 GAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRD----LI 373

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS------------------------- 235
           LWN LI+GCS  G   + + LF  M K+ +   V+                         
Sbjct: 374 LWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHA 433

Query: 236 ----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                           LID + + G L  A ++F++     ++S T M+   SQ    E 
Sbjct: 434 LAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGED 493

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A+ +F QML  G+  + F + S L+AC  + A E G +VH ++    F      G ALV 
Sbjct: 494 AIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVY 553

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
            YAKCG+IE A + F    E+ +++W+AMI GLA HG  ++A+  F +M+  G  P+   
Sbjct: 554 AYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHIT 613

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN- 458
             ++L+AC ++G V  A  +F+SM+  + I+ + +H+  ++++L R G+     +   N 
Sbjct: 614 LTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNM 673

Query: 459 ---------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                                      +  KL  L+P+   ++VLL+N YA+ G W ++A
Sbjct: 674 PFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMA 733

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR LM+  ++KK+P  S++E+   VH F  G   H + ++I+ KL ++     + GY+P
Sbjct: 734 KVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVP 793

Query: 550 GTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
             E  LH++ + EKE  L  HSE+LA+AF LI T  G  I++ K L IC DCH   KY S
Sbjct: 794 NVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYIS 853

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           KI  REI++RD  RFH+F +GTCSC DYW
Sbjct: 854 KIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 125/513 (24%), Positives = 211/513 (41%), Gaps = 97/513 (18%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAEN 107
            +H+ ++   L A    +  L++  S  +    A ++FD   P   H+ ++ L+   + N
Sbjct: 25  HLHSHLLKSGLLAG--FSNHLLTLYSRCRLPSAARAVFDEI-PDPCHVSWSSLVTAYSNN 81

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M    V  N    P V K    +     G  +H L V + + +D FV 
Sbjct: 82  GMPRDALLAFRAMRGRGVPCNEFALPVVLKCAPDVRF---GAQVHALAVATRLVHDVFVA 138

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-------IGYLRKAV- 219
             L  +Y   G    A ++FDE        + + WN +I+   K       IG  R+ V 
Sbjct: 139 NALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREMVW 198

Query: 220 ---------------------------ELFGMMPK----KNVASWVSLIDGFMRKGDLKK 248
                                      ++ G + +    K+V +  +L+D + + GD++ 
Sbjct: 199 SGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEM 258

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +FE+MP   VVSW A I+G   +G   +AL +  QM  +G+  N FT+ S L ACA 
Sbjct: 259 AATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVLKACAG 318

Query: 309 VGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
            GA   G ++H ++  +  DF    A+G  LVDMYAK G ++ A  VF     +DL+ W 
Sbjct: 319 AGAFNLGRQIHGFMVKAVADFDEFVAVG--LVDMYAKHGFLDDARKVFDFMPRRDLILWN 376

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTE-------------------------------- 394
           A+I G +  GR+ + +  F +M   G +                                
Sbjct: 377 ALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAE 436

Query: 395 -----PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
                 D  V   ++ + W  GQ+  A+  F   R D  I  +         +++ + Q 
Sbjct: 437 KIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISST--------TMMTALSQC 488

Query: 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
             G +++   F ++L+ K   P S+VL S + A
Sbjct: 489 DHG-EDAIKLFVQMLR-KGLEPDSFVLSSLLNA 519


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 219/674 (32%), Positives = 347/674 (51%), Gaps = 82/674 (12%)

Query: 41  SNSTKQLRQIHAQIILHNLFASS------RITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           S S   LR +H    LH     S       +   L++    ++ +D A  +FD  T +++
Sbjct: 202 SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 261

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
             +N +I G   N   +  +S FV ML   +  +  T   V    A   L+SLGR +H +
Sbjct: 262 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 321

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            VK+    +      L DMY + G    A  VF E  ++    SV+ +  +I G ++ G 
Sbjct: 322 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGL 377

Query: 215 LRKAVELF------GMMPK--------------------KNVASWV-------------S 235
             +AV+LF      G+ P                     K V  W+             +
Sbjct: 378 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 437

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
           L+D + + G +++A  +F +M  K ++SW  +I G+S+N  A +AL++F  +L+      
Sbjct: 438 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 497

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           ++ TV   L ACA + A + G  +H YI  N +     +  +LVDMYAKCG +  A ++F
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            +   KDL++WT MI G  +HG  ++AI  F +M  +G E D   F+++L AC +SG V 
Sbjct: 558 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 617

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------------- 459
               FF+ MR +  IEP+V+H+  +V++L+R G   + Y+  +N                
Sbjct: 618 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 677

Query: 460 -------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                          K+ +L+P++   YVL++NIYA   +W+ V R+R  + +R ++K+P
Sbjct: 678 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 737

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKE 563
           G S+IE+ G V+ F AG   +   + I + L  + A   E+GY P T++ L + +E EKE
Sbjct: 738 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 797

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
           EAL  HSEKLA+A G+I +  G  I++ K L +CGDCH + K+ SK+++REIVLRD+ RF
Sbjct: 798 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 857

Query: 623 HYFKDGTCSCRDYW 636
           H FKDG CSCR +W
Sbjct: 858 HQFKDGHCSCRGFW 871



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 216/466 (46%), Gaps = 61/466 (13%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T   ++ L   S S K  +++   I  +     S + ++L    +    +  A  +FD  
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             +    +N+L+  LA++  F   I  F  M+   V  +  T+  VSKS +SL  +  G 
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGE 215

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            LH  I+KSG      V   L   Y++  +   A KVFDE  E++    V+ WN +ING 
Sbjct: 216 QLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD----VISWNSIINGY 271

Query: 210 SKIGYLRKAVELFGMM----PKKNVASWVS------------------------------ 235
              G   K + +F  M     + ++A+ VS                              
Sbjct: 272 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 331

Query: 236 -----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                L+D + + GDL  A  +F +M ++ VVS+T+MI G+++ G A +A+ +F +M + 
Sbjct: 332 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G+  + +TV + L+ CA+   L+ G RVH +I  ND G    +  AL+DMYAKCG+++ A
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEA 451

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWY 409
            LVF E + KD+++W  +I G + +    +A+  F  ++      PD      +L AC  
Sbjct: 452 ELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPAC-- 509

Query: 410 SGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVG 447
                 +L+ FD         MR  YF +  V +   +V++ ++ G
Sbjct: 510 -----ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCG 548



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 70/146 (47%), Gaps = 2/146 (1%)

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++ V      +  F ++G  E A+ +    +      +  T+ S L  CA   +L+ G  
Sbjct: 58  DRSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQLCADSKSLKDGKE 115

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           V N+I  N F +   +G+ L  MY  CG+++ AS VF E K +  L W  ++  LA  G 
Sbjct: 116 VDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGD 175

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAI 403
           +  +I  FKKMM SG E D   F  +
Sbjct: 176 FSGSIGLFKKMMSSGVEMDSYTFSCV 201


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 216/690 (31%), Positives = 345/690 (50%), Gaps = 77/690 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K      +  T + ++    ++ S ++ + +HA  +         +   L+   S   +
Sbjct: 42  MKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGT 101

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  AL +F      ++  ++ +I GL +  H Q     F  M R   RPN+ T   +  +
Sbjct: 102 VYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVST 161

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             ++  L  G+ +H  I K G E D  V   L  MY++        KVF    E   +  
Sbjct: 162 ATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVF----EAMTNPD 217

Query: 199 VLLWNVLING------CSK--------------------IGYLRKAVELFGMMPKKNVAS 232
           ++ WN L++G      C +                    I  LR    L      K V +
Sbjct: 218 LVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHA 277

Query: 233 WV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
            +             +L+D + +   L+ AG  F+++  + + SWT +I+G++Q  +AEK
Sbjct: 278 HIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEK 337

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTALV 338
           A+  F QM   G++ N++T+ S LS C+ +  LE G ++H   +    FG    +G+ALV
Sbjct: 338 AVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFG-DIFVGSALV 396

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           D+Y KCG +E A  +F     +D+++W  +I G + HG+ E+A++ F+ M+  G  PD  
Sbjct: 397 DLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEA 456

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ------- 451
            F+ +L+AC + G V+     FDSM   Y I PS++H+  +V++L R G+ ++       
Sbjct: 457 TFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEE 516

Query: 452 ---------------------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     + +  KL +++P   SSY+LLSNI+A++GRW DV
Sbjct: 517 MNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDV 576

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYM 548
             +R LM  R IKK+PG S++EV+G VH F  + G H   +EI++KL+ +       GY+
Sbjct: 577 RNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQSLMSIGYV 636

Query: 549 PGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P TE VLHN+  +EK E L  HSE+LAL+F L+ T     I+I K L IC DCH  MK  
Sbjct: 637 PKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDCHDFMKLI 696

Query: 608 SKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S I+ +EIV+RD  RFH+FK GTCSC+D W
Sbjct: 697 SDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 170/368 (46%), Gaps = 43/368 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +F     KN   +N L+ G A+    +  +  F  M     + ++ T   V K 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A+   L  G+ LH L ++SG E D F+   L DMY + G    A KVF     K ++  
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVF----TKIRNPD 116

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLK------- 247
           V+ W+ +I G  + G+ ++A ELF +M +K    N  +  SL+      GDL+       
Sbjct: 117 VVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHG 176

Query: 248 ----------------------------KAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                                          ++FE M    +VSW A+++GF  +    +
Sbjct: 177 CICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGR 236

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
              +F+QML  G + N FT +S L +C+ +   E G +VH +I  N       +GTALVD
Sbjct: 237 GPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVD 296

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAK   +E A + F     +D+ +WT +I G A   + E+A++YF++M   G +P+   
Sbjct: 297 MYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYT 356

Query: 400 FLAILTAC 407
             + L+ C
Sbjct: 357 LASCLSGC 364



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 92/169 (54%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           ++ A  LF  MPEK  VSW A++NG++Q G+ +K L +F +M +   + + FT+ + L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA  G+L  G  +H     +   +   +G +LVDMY+KCG +  A  VF + +  D++ W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
           +AMI GL   G  ++A + F  M   G  P+     ++++     G ++
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLR 169


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  348 bits (894), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 336/645 (52%), Gaps = 72/645 (11%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSI 85
           NI +   I+LI S  + K+L+QIH Q++++ L  +  +  Q ++S ++    +  Y+  I
Sbjct: 6   NIAKHPTIALIDSFITLKELKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQI 65

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLS 143
            D      L   N +IR  +++         +  +L+ +  + P+  T+ F+ ++ A  S
Sbjct: 66  LDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-S 124

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               G  +H  ++K G EYD  V   L  MY ++       +VF+   + +    ++   
Sbjct: 125 ACEAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQKPD----LVCQT 180

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
            +++ C+K G +                       GF R         LF+ MP++  VS
Sbjct: 181 TMVSACAKCGDI-----------------------GFARN--------LFDSMPQRDFVS 209

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W AMI G++Q G++ +AL +F  M   GV+ N+ +++S ++AC  +GAL+ G   H YI 
Sbjct: 210 WNAMIAGYAQRGQSREALNLFKLMQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIE 269

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            N   +   +GTALVDMY KCGN++ A  VF E  EK++ TW+  I GLA++G  ++ ++
Sbjct: 270 KNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLE 329

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F  M + G  P+   F+++L  C   G V    + FDSM+ D+ IEP ++H+  +V+L 
Sbjct: 330 LFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLY 389

Query: 444 SRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSYV 475
            R G+  +                          Y+N    + +  KL++++ K+  +YV
Sbjct: 390 GRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEGKNHGAYV 449

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHS 533
            LSNIYA  G W  V+ VR  M+   I K PG S +EVNG VH F +G   H     I +
Sbjct: 450 SLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHPSYDVIET 509

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
              +I    +  GY+  T  VL +I+EE KE+AL  HSEK+A+AFGL     G  I+IVK
Sbjct: 510 MWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEGLPIRIVK 569

Query: 593 KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L IC DCH + K  SKI +REI++RD  RFH+FKDG CSC+D+W
Sbjct: 570 NLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/506 (37%), Positives = 292/506 (57%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   YVQ G    A   FDE PEKN+    + +N +I G  +   +  A ELF
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE----VSYNAMIAGYVQTKKMDIARELF 320

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             MP +N++SW ++I G+ + GD+ +A + F+ MP++  VSW A+I G++Q+G  E+AL 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MF ++   G   N  T   ALS CA + ALE G ++H       +G    +G AL+ MY 
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+I+ A+  F   +EKD+++W  M+ G A HG   QA+  F+ M  +G +PD    + 
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-----QD---SQGYQ 454
           +L+AC ++G +     +F SM  DY + P+ KH+T +++LL R G     QD   +  +Q
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 455 NSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
               S+  LL                    +++P++   YVLLSN+YAA GRW D  ++R
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
           + M+   ++K PG+S++EV   +H F  G   H   + I++ LE++    RE+GY+  T+
Sbjct: 621 SKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTK 680

Query: 553 WVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH+++EE KE  L  HSEKLA+AFG++    G  I+++K L +C DCHS +K+ SKI 
Sbjct: 681 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIV 740

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F +G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 157/368 (42%), Gaps = 49/368 (13%)

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           IS+   +   D AL +F+    ++   +N +I G   NS F    + F  M      P R
Sbjct: 56  ISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------PER 109

Query: 130 LTYPF---VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
             + +   ++  V +  L    R    +  K  V +++     L   Y Q G    A +V
Sbjct: 110 DLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNS-----LLSGYAQNGYVDEAREV 164

Query: 187 FDETPEKNK----------------SESVLL-----------WNVLINGCSKIGYLRKAV 219
           FD  PEKN                  E+ LL           WN L+ G  +   L  A 
Sbjct: 165 FDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDAR 224

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
            LF  MP ++  SW ++I G+ + G L +A  LF++ P + V +WTAM++G+ QNG  ++
Sbjct: 225 WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDE 284

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A   F +M +     N+ +  + ++   +   ++    +   + C +     +    ++ 
Sbjct: 285 AKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNI----SSWNTMIT 336

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
            Y + G+I  A   F    ++D ++W A+I G A  G YE+A+  F ++   G   +   
Sbjct: 337 GYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRAT 396

Query: 400 FLAILTAC 407
           F   L+ C
Sbjct: 397 FGCALSTC 404



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 140/610 (22%), Positives = 250/610 (40%), Gaps = 64/610 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIH Q +         +   L++      SID A   F+    K++  +N ++ G A +
Sbjct: 414 KQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARH 473

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFV 166
              +  ++ F  M    V+P+ +T   V  + +   LL  G      + K  GV   +  
Sbjct: 474 GFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKH 533

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSES--VLLWNVLINGCSKIGYLRKAVELFGM 224
              + D+  + G+   A  +    P +  + S   LL    I+G +++G   KA E+   
Sbjct: 534 YTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELG--EKAAEMVFK 591

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN-------GFS 272
           M  +N   +V L + +   G    A ++  +M + GV      SW  + N       G  
Sbjct: 592 MEPQNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDC 651

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGL-- 329
            + E E+  A + + LD  +R   +  ++ L     +    E  ++ H+      FG+  
Sbjct: 652 SHPEKERIYA-YLEELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILT 710

Query: 330 -KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
             G     ++     C +  +A            +   + I G  I  R      +F + 
Sbjct: 711 IPGGRPIRVMKNLRVCEDCHSA------------IKHISKIVGRLIILRDSHRFHHFNEG 758

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
             S  +     FL ++    Y+G +     +F  M  +Y + P+ KH+T +++LL RV +
Sbjct: 759 FCSCGDYWLQFFLLVVI---YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDR 815

Query: 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
             +G     +      +L  K    +  +    +   + +DV           ++K PG+
Sbjct: 816 LEEGALLGASRIHGNTELGEKAAQMFFKMGPQNSGISKMRDVG----------VQKVPGY 865

Query: 509 SYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQ-GYMPGTEWVLHNIKEEKEEALG 567
           S+ EV   +H F  G   L++E            RE  G++   +  +   +EEKE  L 
Sbjct: 866 SWFEVQNKIHTFSVGLF-LSRE------------RENIGFLEELDLKMREREEEKERTLK 912

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKK-LTICGDCHSLMKYASKISQREIVLRDTRFHYFK 626
             SE LA A G++    G   +++KK + +C DC S +K+ SKI  R I LRD+  H F 
Sbjct: 913 YLSENLAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDS--HRFN 970

Query: 627 DGTCSCRDYW 636
           +  CSC +YW
Sbjct: 971 ESICSCGEYW 980



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 66/302 (21%)

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
           TR +  V +    + K   +L WN  I+   + G+   A+ +F  MP+++  S+ ++I G
Sbjct: 30  TRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISG 89

Query: 240 FMRKGDLKKAGELFEQMPEK-------------------------------GVVSWTAMI 268
           ++R      A  LF+QMPE+                                VVSW +++
Sbjct: 90  YLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLL 149

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH------NYI 322
           +G++QNG  ++A  +F  M +     N  +    L+A    G +E    +       + I
Sbjct: 150 SGYAQNGYVDEAREVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205

Query: 323 SCN----DFGLKGAIGTA-----------------LVDMYAKCGNIEAASLVFGETKEKD 361
           S N     F  K  +G A                 ++  YA+ G +  A  +F E+  +D
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           + TWTAM+ G   +G  ++A  +F +M     E +   + A++     + ++ +A   F+
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFE 321

Query: 422 SM 423
           SM
Sbjct: 322 SM 323



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 48/254 (18%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            I  A   FD    ++   +  +I G A++ H++  ++ FV + +     NR T+     
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A ++ L LG+ +H   VK G     FV   L  MY + G    A   F+   EK+   
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD--- 459

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------------- 232
            V+ WN ++ G ++ G+ R+A+ +F  M    V                           
Sbjct: 460 -VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 233 ---------------WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE 276
                          +  +ID   R G L++A +L   MP + G  SW A++     +G 
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 277 ---AEKALAMFFQM 287
               EKA  M F+M
Sbjct: 579 TELGEKAAEMVFKM 592


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 219/674 (32%), Positives = 347/674 (51%), Gaps = 82/674 (12%)

Query: 41  SNSTKQLRQIHAQIILHNLFASS------RITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           S S   LR +H    LH     S       +   L++    ++ +D A  +FD  T +++
Sbjct: 51  SKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDV 110

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
             +N +I G   N   +  +S FV ML   +  +  T   V    A   L+SLGR +H +
Sbjct: 111 ISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSI 170

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            VK+    +      L DMY + G    A  VF E  ++    SV+ +  +I G ++ G 
Sbjct: 171 GVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDR----SVVSYTSMIAGYAREGL 226

Query: 215 LRKAVELF------GMMPK--------------------KNVASWV-------------S 235
             +AV+LF      G+ P                     K V  W+             +
Sbjct: 227 AGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNA 286

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
           L+D + + G +++A  +F +M  K ++SW  +I G+S+N  A +AL++F  +L+      
Sbjct: 287 LMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSP 346

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           ++ TV   L ACA + A + G  +H YI  N +     +  +LVDMYAKCG +  A ++F
Sbjct: 347 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 406

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            +   KDL++WT MI G  +HG  ++AI  F +M  +G E D   F+++L AC +SG V 
Sbjct: 407 DDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVD 466

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------------- 459
               FF+ MR +  IEP+V+H+  +V++L+R G   + Y+  +N                
Sbjct: 467 EGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCG 526

Query: 460 -------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                          K+ +L+P++   YVL++NIYA   +W+ V R+R  + +R ++K+P
Sbjct: 527 CRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNP 586

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKE 563
           G S+IE+ G V+ F AG   +   + I + L  + A   E+GY P T++ L + +E EKE
Sbjct: 587 GCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKE 646

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
           EAL  HSEKLA+A G+I +  G  I++ K L +CGDCH + K+ SK+++REIVLRD+ RF
Sbjct: 647 EALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRF 706

Query: 623 HYFKDGTCSCRDYW 636
           H FKDG CSCR +W
Sbjct: 707 HQFKDGHCSCRGFW 720



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 119/410 (29%), Positives = 195/410 (47%), Gaps = 61/410 (14%)

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    +    +N+L+  LA++  F   I  F  M+   V  +  T+  VSKS +SL  +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  LH  I+KSG      V   L   Y++  +   A KVFDE  E++    V+ WN +
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERD----VISWNSI 116

Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVS-------------------------- 235
           ING    G   K + +F  M     + ++A+ VS                          
Sbjct: 117 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 176

Query: 236 ---------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                    L+D + + GDL  A  +F +M ++ VVS+T+MI G+++ G A +A+ +F +
Sbjct: 177 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 236

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M + G+  + +TV + L+ CA+   L+ G RVH +I  ND G    +  AL+DMYAKCG+
Sbjct: 237 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 296

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILT 405
           ++ A LVF E + KD+++W  +I G + +    +A+  F  ++      PD      +L 
Sbjct: 297 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 356

Query: 406 ACWYSGQVKLALNFFDS--------MRFDYFIEPSVKHHTVVVNLLSRVG 447
           AC        +L+ FD         MR  YF +  V +   +V++ ++ G
Sbjct: 357 AC-------ASLSAFDKGREIHGYIMRNGYFSDRHVANS--LVDMYAKCG 397


>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like, partial [Cucumis sativus]
          Length = 610

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 205/589 (34%), Positives = 313/589 (53%), Gaps = 62/589 (10%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S+ K    + E H ISL+ S  +   L+++ AQII H    +  +   +++S    K + 
Sbjct: 15  SAQKHPRWVLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMA 74

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           +A  +FDHF    + ++N + RG   N+ ++  +  F  M  + VRPN  T+P V KS A
Sbjct: 75  HARHLFDHFPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCA 134

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
            +     G  +HC ++K G+E + FV   L D+Y        A+K+F    E+N      
Sbjct: 135 KIGAFVEGEEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTS 194

Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
                                    V+LWN++++G  +IG ++ A +LF  MP ++  SW
Sbjct: 195 MISGYILCNRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSW 254

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGV 292
            ++++G+   GD++   +LFE+MPE+ V SW  +I G++ NG   + L  F +ML D  V
Sbjct: 255 NTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLV 314

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAA 350
             ND T+V+ LSACA++GAL+ G  VH Y +    G KG+I  G AL+DMY+KCG IE A
Sbjct: 315 VPNDATLVTVLSACARLGALDLGKWVHVYAA--TIGFKGSIYVGNALIDMYSKCGLIENA 372

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF     KDL+TW +MI GLA HG    A+  F +M  +G +PDG  F+ +L +C + 
Sbjct: 373 MEVFESMDLKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHL 432

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------ 452
           G V+   ++F+SM  +Y I P ++H+  +V+L  R G   +                   
Sbjct: 433 GLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAA 492

Query: 453 -------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                  Y+N   ++ +  KL+ L+PK+P++YVLLSNIY   GRWKDVAR++ LM+    
Sbjct: 493 LLGACRIYKNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGS 552

Query: 503 KKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMP 549
           KK PG S IEVN  V  F +    H  +KEI+  L+ +M   R  GY P
Sbjct: 553 KKLPGCSLIEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYGP 601


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 233/681 (34%), Positives = 336/681 (49%), Gaps = 87/681 (12%)

Query: 36  SLIHSSNSTKQL---RQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           SL+ S+ ST      R IHA II  H     S ++  L++  S    ++ A  +      
Sbjct: 11  SLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHL 70

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           + +  +  LI G   N  F   + HF  M R +V+PN  T+P V K+ A + +   G+ +
Sbjct: 71  RTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQI 130

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI----- 206
           H L +K G+ YD FV     DMY + G    A  +FDE P++N +     WN  I     
Sbjct: 131 HGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLAT----WNAYISNAVQ 186

Query: 207 ------------------------------NGCSKIGYLRKAVELFGMMP----KKNVAS 232
                                         N C  +  L    +L   +     K++V+ 
Sbjct: 187 DRRSLDAIVAFKEFLCVHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSV 246

Query: 233 WVSLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              LID + + GD+  A  +F ++   K VVSW +M+    QN E E+A  +F Q     
Sbjct: 247 ANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKE- 305

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEA 349
           V   DF + S LSACA++G LE G  VH     +C +  +   +G+ALVDMY KCG+IE 
Sbjct: 306 VEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNI--FVGSALVDMYGKCGSIEN 363

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTAC 407
           A  VF E  E++L+TW AMI G A  G  + A++ F++M     G  P     ++IL+ C
Sbjct: 364 AEQVFSELPERNLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVC 423

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------- 458
              G V+  +  F+SMR +Y IEP  +H   VV+LL R G   + Y+  QN         
Sbjct: 424 SRVGAVERGIQIFESMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISV 483

Query: 459 -------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                              +  KL +L      ++V+LSN+ A+ GRW++   VR  M+ 
Sbjct: 484 WGALLGACRMHGKTELGKIAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKD 543

Query: 500 RSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
             IKK+ G+S+I V   +H F+A    H    EI + L  +  G +E GY+P T   L +
Sbjct: 544 IGIKKNVGYSWIAVKNRIHVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFD 603

Query: 558 IK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++ EEK   +  HSEK+ALAFGLI    G  I+I K L ICGDCHS +K+ S+I  REI+
Sbjct: 604 LEDEEKASEVWYHSEKIALAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREII 663

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
           +RD  RFH FKDG CSC+DYW
Sbjct: 664 VRDNHRFHRFKDGCCSCKDYW 684


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 214/666 (32%), Positives = 333/666 (50%), Gaps = 77/666 (11%)

Query: 44  TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           T+  ++IH  ++   L     +   L+        ++YA  +FD    +++  ++ +IR 
Sbjct: 110 TQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRS 169

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           L+ N  F   +     M  + VRP+ +    +    A  + + +G+ +H  ++++     
Sbjct: 170 LSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEH 229

Query: 164 AFV--RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
             V     L DMY + G    A ++F+   +K    +V+ W  +I GC +   L +  +L
Sbjct: 230 MGVPTTTALLDMYAKCGHLGLARQLFNGLTQK----TVVSWTAMIAGCIRSNRLEEGTKL 285

Query: 222 FGMMPKKNV---------------------------------------ASWVSLIDGFMR 242
           F  M ++N+                                       A   +L+D + +
Sbjct: 286 FIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGK 345

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
             D++ A  LF+    + V+ WTAM++ ++Q    ++A  +F QM  +GVR    T+VS 
Sbjct: 346 CSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 405

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LS CA  GAL+ G  VH+YI      +   + TALVDMYAKCG+I AA  +F E   +D+
Sbjct: 406 LSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 465

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
             W A+I G A+HG  E+A+  F +M   G +P+   F+ +L AC ++G V      F+ 
Sbjct: 466 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 525

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------Q 454
           M   + + P ++H+  +V+LL R G   + +                            Q
Sbjct: 526 MVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 585

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
             + + T+LL+++P++    VL+SNIYAA  RW D A VR  M+   +KK+PG S IEVN
Sbjct: 586 LGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVN 645

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSE 571
           G VH F  G   H   + I+  L ++     E GY+P T  VL NI +EEKE AL  HSE
Sbjct: 646 GTVHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSE 705

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           KLA+AFGLI T P T I+IVK L +C DCH+  K  SKI  R I++RD  RFH+F++G C
Sbjct: 706 KLAMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYC 765

Query: 631 SCRDYW 636
           SC DYW
Sbjct: 766 SCGDYW 771



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 6/218 (2%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKG 260
           ++  C ++ + +   E+ G + KK +   V + +  M        ++ A  +F++M E+ 
Sbjct: 100 VLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERD 159

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSW+ MI   S+N E + AL +  +M    VR ++  +VS ++  A    +  G  +H 
Sbjct: 160 VVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 321 YI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           Y+  + N+  +     TAL+DMYAKCG++  A  +F    +K +++WTAMI G     R 
Sbjct: 220 YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRL 279

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           E+  + F +M      P+    L+++  C ++G ++L 
Sbjct: 280 EEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLG 317



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 134/309 (43%), Gaps = 16/309 (5%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           NRL         ++  +   N IT   +I     + + +  +Q+HA I+ +    S  + 
Sbjct: 277 NRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALA 336

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T L+        I  A ++FD    +++ I+  ++   A+ +      + F  M    VR
Sbjct: 337 TALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVR 396

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P ++T   +    A    L LG+ +H  I K  VE D  +   L DMY + G    A ++
Sbjct: 397 PTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRL 456

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
           F E      S  + +WN +I G +  GY  +A+++F  M ++ V     +++ L+     
Sbjct: 457 FIEAI----SRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSH 512

Query: 243 KGDLKKAGELFEQMPEK-GVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G + +  +LFE+M    G+V     +  M++   + G  ++A  M   M    ++ N  
Sbjct: 513 AGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM---PIKPNTI 569

Query: 298 TVVSALSAC 306
              + ++AC
Sbjct: 570 VWGALVAAC 578



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 57/109 (52%)

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           +F   S L AC +V   + G  +H ++          +G AL+ MY +C  +E A LVF 
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           +  E+D+++W+ MI  L+ +  ++ A++  ++M +    P     ++++
Sbjct: 154 KMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMV 202


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 210/626 (33%), Positives = 331/626 (52%), Gaps = 75/626 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A+S+F+     ++  +N +I G   + H +  +     M R  + PN  T     K+ A 
Sbjct: 312 AISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAG 371

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           + L  LGR LH  ++K  +E D FV V L DMY +      A   F+  PEK+    ++ 
Sbjct: 372 MGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD----LIA 427

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA------SWV--------------------- 234
           WN +I+G S+     +A+ LF  M K+ +       S +                     
Sbjct: 428 WNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSV 487

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       SLID + +   ++ A  +FE+     +VS+T+MI  ++Q G+ E+AL 
Sbjct: 488 KSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M D  ++ + F   S L+ACA + A E G ++H +I    F L    G +LV+MYA
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYA 607

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+I+ A   F E  E+ +++W+AMI GLA HG   QA+Q F +M+  G  P+    ++
Sbjct: 608 KCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVS 667

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------- 455
           +L AC ++G V  A  +F+SM   +  +P  +H+  +++LL R G+ ++  +        
Sbjct: 668 VLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFE 727

Query: 456 ---------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                 + +   L  L+P+   ++VLL+NIYA+ G+W++VA VR
Sbjct: 728 ANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVR 787

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            LM+   +KK+PG S+IEV   V+ F  G   H  ++EI++KL+++     + GY+P  E
Sbjct: 788 RLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVE 847

Query: 553 WVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
             LH++++ EKE  L  HSEKLA+AFGLI T  G  I++ K L +C DCH+  KY  KI 
Sbjct: 848 IDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIV 907

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
            REI++RD  RFH+FKDG+CSC DYW
Sbjct: 908 SREIIVRDINRFHHFKDGSCSCGDYW 933



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/436 (28%), Positives = 208/436 (47%), Gaps = 45/436 (10%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           TTAI    + K +  P++ ++ + ++S   ++ S +   QIHA I    L     I   L
Sbjct: 40  TTAILNLID-KGNFTPTS-VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHL 97

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           I+  S  ++  YA  + D  +  +L  ++ LI G A+N      +  F  M  L V+ N 
Sbjct: 98  INLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNE 157

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T+  V K+ + +  L +G+ +H ++V SG E D FV   L  MY +  +   + ++FDE
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-NVASWV-------- 234
            PE+N    V+ WN L +   +I +  +AV LF      G+ P + +++S V        
Sbjct: 218 IPERN----VVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 235 ------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                                   +L+D + + GDL  A  +FE++ +  +VSW A+I G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
              +   E+AL +  QM  +G+  N FT+ SAL ACA +G  E G ++H+ +   D    
Sbjct: 334 CVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESD 393

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +   LVDMY+KC  +E A + F    EKDL+ W A+I G + +    +A+  F +M  
Sbjct: 394 LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 453

Query: 391 SGTEPDGTVFLAILTA 406
            G   + T    IL +
Sbjct: 454 EGIGFNQTTLSTILKS 469



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 181/414 (43%), Gaps = 46/414 (11%)

Query: 36  SLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           S++ + +  K LR   Q+H  +++        +   L+   +       +  +FD    +
Sbjct: 162 SVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPER 221

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N L     +       +  F  M+   ++PN  +   +  +   L   S G+ +H
Sbjct: 222 NVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIH 281

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G ++D F    L DMY ++G    A  VF    EK K   ++ WN +I GC   
Sbjct: 282 GYLIKLGYDWDPFSANALVDMYAKVGDLADAISVF----EKIKQPDIVSWNAVIAGCVLH 337

Query: 213 GYLRKAVELFGMMPKKNVAS---------------------------------------W 233
            +  +A+EL G M +  +                                          
Sbjct: 338 EHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVS 397

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           V L+D + +   L+ A   F  +PEK +++W A+I+G+SQ  E  +AL++F +M   G+ 
Sbjct: 398 VGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIG 457

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  T+ + L + A +  +    +VH     + F     +  +L+D Y KC ++E A  +
Sbjct: 458 FNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERI 517

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           F E    DL+++T+MI   A +G+ E+A++ F +M     +PD  V  ++L AC
Sbjct: 518 FEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC 571



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 158/340 (46%), Gaps = 44/340 (12%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P  ++Y  +     +   L  G  +H  I KSG+  D  +R HL ++Y +      A K+
Sbjct: 54  PTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKL 113

Query: 187 FDETPEKNKSESVLLWNVLING-----------------------------------CSK 211
            DE+ E +    ++ W+ LI+G                                   CS 
Sbjct: 114 VDESSEPD----LVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSI 169

Query: 212 IGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
           +  LR   ++ G++     + +V    +L+  + +  +   +  LF+++PE+ VVSW A+
Sbjct: 170 VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNAL 229

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
            + + Q     +A+ +F++M+ +G++ N+F++ S ++AC  +     G  +H Y+    +
Sbjct: 230 FSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY 289

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                   ALVDMYAK G++  A  VF + K+ D+++W A+I G  +H  +EQA++   +
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFD 426
           M  SG  P+     + L AC   G  +L      S M+ D
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMD 389



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 172/397 (43%), Gaps = 38/397 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+H+ ++  ++ +   ++  L+   S    ++ A   F+    K+L  +N +I G ++ 
Sbjct: 379 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 438

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +S FV M +  +  N+ T   + KS A L ++ + R +H L VKSG   D +V 
Sbjct: 439 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 498

Query: 168 VHLAD-------------------------------MYVQLGKTRGAFKVFDETPEKNKS 196
             L D                                Y Q G+   A K+F E  +    
Sbjct: 499 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 558

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
               + + L+N C+ +    +  +L   + K     ++ +  SL++ + + G +  AG  
Sbjct: 559 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 618

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F ++ E+G+VSW+AMI G +Q+G   +AL +F QML  GV  N  T+VS L AC   G +
Sbjct: 619 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 678

Query: 313 -EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIW 370
            EA +   +      F         ++D+  + G I EA  LV     E +   W A++ 
Sbjct: 679 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 738

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTA 406
              IH   E   +  + +     E  GT V LA + A
Sbjct: 739 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYA 775



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 111/218 (50%), Gaps = 4/218 (1%)

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKA 249
           N + + + ++ L++ C     LR  +++   + K  ++   S    LI+ + +  +   A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYA 110

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            +L ++  E  +VSW+A+I+G++QNG    AL  F +M   GV+ N+FT  S L AC+ V
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
             L  G +VH  +  + F     +   LV MYAKC     +  +F E  E+++++W A+ 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                     +A+  F +M+ SG +P+     +++ AC
Sbjct: 231 SCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC 268



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 11/243 (4%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           HK      +T + +++ S+   + +   RQ+H   +     +   +   LI S      +
Sbjct: 452 HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHV 511

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A  IF+  T  +L  F  +I   A+    +  +  F+ M  + ++P+R     +  + 
Sbjct: 512 EDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC 571

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A+LS    G+ LH  I+K G   D F    L +MY + G    A + F E  E+     +
Sbjct: 572 ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG----I 627

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQ 255
           + W+ +I G ++ G+ R+A++LF  M K+ V+    + VS++      G + +A   FE 
Sbjct: 628 VSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFES 687

Query: 256 MPE 258
           M E
Sbjct: 688 MEE 690


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  348 bits (893), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 210/689 (30%), Positives = 350/689 (50%), Gaps = 76/689 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +  + +PS  IT   ++    S    K  ++ HAQ+I     +  RI T L+S      S
Sbjct: 154 VDEAMEPSI-ITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGS 212

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A  +FD    +++  FNV+I G A++   +     F  M +   +PNR+++  +   
Sbjct: 213 MDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDG 272

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            ++   L+ G+ +H   + +G+  D  V   L  MY+  G   GA +VFD    K K   
Sbjct: 273 CSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFD----KMKVRD 328

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDG--------------- 239
           V+ W V+I G ++   +  A  LF  M ++ +     +++ +I+                
Sbjct: 329 VVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHS 388

Query: 240 --------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                               + + G +K A ++F+ M  + VVSW+AMI  + +NG  E+
Sbjct: 389 QVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEE 448

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A   F  M    V  +  T ++ L+AC  +GAL+ G+ ++      D      +G AL++
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALIN 508

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           M  K G+IE A  +F    ++D++TW  MI G ++HG   +A+  F +M+     P+   
Sbjct: 509 MNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVT 568

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------- 452
           F+ +L+AC  +G V+    FF  +     I P+++ +  +V+LL R G+  +        
Sbjct: 569 FVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRM 628

Query: 453 ------------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                             Y N   ++ +  + L  +P   + YV LS++YAA G W++VA
Sbjct: 629 PLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVA 688

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR +M+ R ++K+ G ++IEV G +H F  E   H  A EI+++L  +M   + +GY+P
Sbjct: 689 KVRKVMESRGVRKEQGCTWIEVEGKLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIP 748

Query: 550 GTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T+ VLHN+ E EKEEA+  HSEKLA+A+G++    G  I+I K L +CGDCHS  K+ S
Sbjct: 749 VTQNVLHNVGEQEKEEAISYHSEKLAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFIS 808

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K++ REI+ RD +RFH+FK+G CSC DYW
Sbjct: 809 KVTGREIIARDASRFHHFKNGVCSCGDYW 837



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 201/436 (46%), Gaps = 48/436 (11%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI   S+  ++  A   FD    K +  +N +I G A+  H +   + F  M+  ++ P+
Sbjct: 102 LIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPS 161

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T+  V  + +S + L LG+  H  ++K G   D  +   L  MYV+ G   GA +VFD
Sbjct: 162 IITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFD 221

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG----- 239
              +++ S     +NV+I G +K G   KA +LF  M     K N  S++S++DG     
Sbjct: 222 GLYKRDVST----FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPE 277

Query: 240 ------------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                                         +M  G ++ A  +F++M  + VVSWT MI 
Sbjct: 278 ALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIR 337

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+++N   E A  +F  M + G++ +  T +  ++ACA    L     +H+ +    FG 
Sbjct: 338 GYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGT 397

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              + TALV MYAKCG I+ A  VF     +D+++W+AMI     +G  E+A + F  M 
Sbjct: 398 DLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMK 457

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
            +  EPD   ++ +L AC + G + L +  +        I+  +  H  V N L  +   
Sbjct: 458 RNNVEPDVVTYINLLNACGHLGALDLGMEIYTQA-----IKADLVSHIPVGNALINMNVK 512

Query: 450 SQGYQNSQNSFTKLLQ 465
               + ++  F  ++Q
Sbjct: 513 HGSIERARYIFENMVQ 528



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 144/360 (40%), Gaps = 60/360 (16%)

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           +V D   +  +  ++   N LI   S  G + +A + F  +  K V +W ++I G+ + G
Sbjct: 82  QVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLG 141

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            +K+                               A A+F QM+D  +  +  T +  L 
Sbjct: 142 HVKE-------------------------------AFALFRQMVDEAMEPSIITFLIVLD 170

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC+    L+ G   H  +    F     IGTALV MY K G+++ A  VF    ++D+ T
Sbjct: 171 ACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVST 230

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-------WYSGQVKLAL 417
           +  MI G A  G  E+A Q F +M   G +P+   FL+IL  C       W        +
Sbjct: 231 FNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCM 290

Query: 418 N--FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475
           N    D +R              V   L R+       + ++  F K   +K +   S+ 
Sbjct: 291 NTGLVDDVR--------------VATALIRMYMGCGSIEGARRVFDK---MKVRDVVSWT 333

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKL 535
           ++   YA     +D   +   MQ   I+ D   +YI +        +    LA+EIHS++
Sbjct: 334 VMIRGYAENSNIEDAFGLFATMQEEGIQPDR-ITYIHIINACA--SSADLSLAREIHSQV 390


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 191/506 (37%), Positives = 292/506 (57%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   YVQ G    A   FDE PEKN+    + +N +I G  +   +  A ELF
Sbjct: 265 DVFTWTAMVSGYVQNGMLDEAKTFFDEMPEKNE----VSYNAMIAGYVQTKKMDIARELF 320

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             MP +N++SW ++I G+ + GD+ +A + F+ MP++  VSW A+I G++Q+G  E+AL 
Sbjct: 321 ESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALN 380

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MF ++   G   N  T   ALS CA + ALE G ++H       +G    +G AL+ MY 
Sbjct: 381 MFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYF 440

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+I+ A+  F   +EKD+++W  M+ G A HG   QA+  F+ M  +G +PD    + 
Sbjct: 441 KCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVG 500

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-----QD---SQGYQ 454
           +L+AC ++G +     +F SM  DY + P+ KH+T +++LL R G     QD   +  +Q
Sbjct: 501 VLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQ 560

Query: 455 NSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
               S+  LL                    +++P++   YVLLSN+YAA GRW D  ++R
Sbjct: 561 PGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDADKMR 620

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
           + M+   ++K PG+S++EV   +H F  G   H   + I++ LE++    RE+GY+  T+
Sbjct: 621 SKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVSLTK 680

Query: 553 WVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH+++EE KE  L  HSEKLA+AFG++    G  I+++K L +C DCHS +K+ SKI 
Sbjct: 681 LVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHISKIV 740

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I+LRD+ RFH+F +G CSC DYW
Sbjct: 741 GRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 158/371 (42%), Gaps = 49/371 (13%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
            + IS+   +   D AL +F+    ++   +N +I G   NS F    + F  M      
Sbjct: 53  NKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM------ 106

Query: 127 PNRLTYPF---VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           P R  + +   ++  V +  L    R    +  K  V +++     L   Y Q G    A
Sbjct: 107 PERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNS-----LLSGYAQNGYVDEA 161

Query: 184 FKVFDETPEKNK----------------SESVLL-----------WNVLINGCSKIGYLR 216
            +VFD  PEKN                  E+ LL           WN L+ G  +   L 
Sbjct: 162 REVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLG 221

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
            A  LF  MP ++  SW ++I G+ + G L +A  LF++ P + V +WTAM++G+ QNG 
Sbjct: 222 DARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGM 281

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            ++A   F +M +     N+ +  + ++   +   ++    +   + C +     +    
Sbjct: 282 LDEAKTFFDEMPE----KNEVSYNAMIAGYVQTKKMDIARELFESMPCRNI----SSWNT 333

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++  Y + G+I  A   F    ++D ++W A+I G A  G YE+A+  F ++   G   +
Sbjct: 334 MITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLN 393

Query: 397 GTVFLAILTAC 407
              F   L+ C
Sbjct: 394 RATFGCALSTC 404



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 128/302 (42%), Gaps = 66/302 (21%)

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
           TR +  V +    + K   +L WN  I+   + G+   A+ +F  MP+++  S+ ++I G
Sbjct: 30  TRRSESVTNNNKPRVKDPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISG 89

Query: 240 FMRKGDLKKAGELFEQMPEK-------------------------------GVVSWTAMI 268
           ++R      A  LF+QMPE+                                VVSW +++
Sbjct: 90  YLRNSKFNLARNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLL 149

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH------NYI 322
           +G++QNG  ++A  +F  M +     N  +    L+A    G +E    +       + I
Sbjct: 150 SGYAQNGYVDEAREVFDNMPE----KNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLI 205

Query: 323 SCN----DFGLKGAIGTA-----------------LVDMYAKCGNIEAASLVFGETKEKD 361
           S N     F  K  +G A                 ++  YA+ G +  A  +F E+  +D
Sbjct: 206 SWNCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRD 265

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           + TWTAM+ G   +G  ++A  +F +M     E +   + A++     + ++ +A   F+
Sbjct: 266 VFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIAGYVQTKKMDIARELFE 321

Query: 422 SM 423
           SM
Sbjct: 322 SM 323



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 101/254 (39%), Gaps = 48/254 (18%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            I  A   FD    ++   +  +I G A++ H++  ++ FV + +     NR T+     
Sbjct: 343 DIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALS 402

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A ++ L LG+ +H   VK G     FV   L  MY + G    A   F+   EK+   
Sbjct: 403 TCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKD--- 459

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------------- 232
            V+ WN ++ G ++ G+ R+A+ +F  M    V                           
Sbjct: 460 -VVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYF 518

Query: 233 ---------------WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE 276
                          +  +ID   R G L++A +L   MP + G  SW A++     +G 
Sbjct: 519 YSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGN 578

Query: 277 ---AEKALAMFFQM 287
               EKA  M F+M
Sbjct: 579 TELGEKAAEMVFKM 592


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 200/626 (31%), Positives = 329/626 (52%), Gaps = 75/626 (11%)

Query: 82   ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
            AL +F      ++  ++ +I  L +    +     F  M    V PN+ T   +  +   
Sbjct: 384  ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 142  LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            L  L  G  +H  + K G EYD  V   L  MY+++G  +   +VF+ T  ++    ++ 
Sbjct: 444  LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRD----LIS 499

Query: 202  WNVLING------CSK--------------------IGYLRKAVELFGMMPKKNVASWV- 234
            WN L++G      C                      I  LR    L  +   K V + + 
Sbjct: 500  WNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIV 559

Query: 235  ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                        +L+D + +   L+ A  +F ++ ++ + +WT ++ G++Q+G+ EKA+ 
Sbjct: 560  KNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVK 619

Query: 283  MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
             F QM   GV+ N+FT+ S+LS C+++  L++G ++H+            + +ALVDMYA
Sbjct: 620  CFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYA 679

Query: 343  KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
            KCG +E A +VF     +D ++W  +I G + HG+  +A++ F+ M+  GT PD   F+ 
Sbjct: 680  KCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIG 739

Query: 403  ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ----------- 451
            +L+AC + G ++     F+S+   Y I P+++H+  +V++L R G+  +           
Sbjct: 740  VLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLT 799

Query: 452  -----------------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                               +  + +  KL +L+P+  S+Y+LLSN++AA+G W DV  VR
Sbjct: 800  SNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVR 859

Query: 495  TLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             LM  R +KK+PG S++EVNG VH F +  G H   +EIH KL+D+       GY P T+
Sbjct: 860  ALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTD 919

Query: 553  WVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
             VLHN+ + EK+E L  HSE+LALAF L+ T+   TI+I K L ICGDCH  MK  S+I+
Sbjct: 920  HVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEIT 979

Query: 612  QREIVLRDTR-FHYFKDGTCSCRDYW 636
             +E+V+RD   FH+FK+G+CSC+++W
Sbjct: 980  NQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/497 (23%), Positives = 217/497 (43%), Gaps = 51/497 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH Q+I   +   S +   L++  +   S +YA  +F     +++  +  LI G    
Sbjct: 148 KAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAE 207

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            +    ++ F  M R  V  N  TY    K+ +    L  G+ +H   +K G   D FV 
Sbjct: 208 GYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVG 267

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L D+Y + G+   A +VF   P++N     + WN L+NG +++G   K + LF  M  
Sbjct: 268 SALVDLYAKCGEMVLAERVFLCMPKQN----AVSWNALLNGFAQMGDAEKVLNLFCRMTG 323

Query: 228 KNV-------------------------------------ASWVS--LIDGFMRKGDLKK 248
             +                                       ++S  L+D + + G    
Sbjct: 324 SEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGD 383

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F ++ +  VVSW+A+I    Q G++ +A  +F +M  +GV  N FT+ S +SA   
Sbjct: 384 ALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATD 443

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +G L  G  +H  +    F     +  ALV MY K G+++    VF  T  +DL++W A+
Sbjct: 444 LGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNAL 503

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           + G   +   +  ++ F +M+  G  P+   F++IL +C     V L       +     
Sbjct: 504 LSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI----- 558

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
           ++ S+  +  V   L  +   ++  ++++  F +L++   +   ++ ++   YA +G+ +
Sbjct: 559 VKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIK---RDLFAWTVIVAGYAQDGQGE 615

Query: 489 DVARVRTLMQRRSIKKD 505
              +    MQR  +K +
Sbjct: 616 KAVKCFIQMQREGVKPN 632



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 182/399 (45%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA+ I    F+   + + L+   +    +  A  +F     +N   +N L+ G A+ 
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  ++ F  M    +  ++ T   V K  A+   L  G+ +H L ++ G E D F+ 
Sbjct: 309 GDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFIS 368

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY + G    A KVF    + +    V+ W+ +I    + G  R+A E+F     
Sbjct: 369 CCLVDMYSKCGLAGDALKVFVRIEDPD----VVSWSAIITCLDQKGQSREAAEVFKRMRH 424

Query: 223 -GMMPKK-NVASWVS--------------------------------LIDGFMRKGDLKK 248
            G++P +  +AS VS                                L+  +M+ G ++ 
Sbjct: 425 SGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQD 484

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
              +FE    + ++SW A+++GF  N   +  L +F QML  G   N +T +S L +C+ 
Sbjct: 485 GCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSS 544

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +  ++ G +VH  I  N       +GTALVDMYAK   +E A  +F    ++DL  WT +
Sbjct: 545 LSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVI 604

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + G A  G+ E+A++ F +M   G +P+     + L+ C
Sbjct: 605 VAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 643



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 154/317 (48%), Gaps = 49/317 (15%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  + ++ AS   L+ G+ +H  ++KSG+  D+ +   L ++Y + G    A KVF E P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------- 232
           E++    V+ W  LI G    GY   AV LF  M ++ V +                   
Sbjct: 191 ERD----VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLE 246

Query: 233 --------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                                 +L+D + + G++  A  +F  MP++  VSW A++NGF+
Sbjct: 247 FGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY---ISCNDFGL 329
           Q G+AEK L +F +M  + +  + FT+ + L  CA  G L AG  VH+    I C    L
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCE---L 363

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              I   LVDMY+KCG    A  VF   ++ D+++W+A+I  L   G+  +A + FK+M 
Sbjct: 364 DEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMR 423

Query: 390 YSGTEPDGTVFLAILTA 406
           +SG  P+     ++++A
Sbjct: 424 HSGVIPNQFTLASLVSA 440



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 72/217 (33%), Positives = 117/217 (53%), Gaps = 10/217 (4%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  C+  G L +   + G + K  +      W SL++ + + G    A ++F ++PE+ 
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH- 319
           VVSWTA+I GF   G    A+ +F +M   GV AN+FT  +AL AC+    LE G +VH 
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             I   DF     +G+ALVD+YAKCG +  A  VF    +++ ++W A++ G A  G  E
Sbjct: 254 EAIKVGDFS-DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAE 312

Query: 380 QAIQYFKKMMYSGTEPDGTVFL--AILTACWYSGQVK 414
           + +  F +M  +G+E + + F    +L  C  SG ++
Sbjct: 313 KVLNLFCRM--TGSEINFSKFTLSTVLKGCANSGNLR 347



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 165/372 (44%), Gaps = 47/372 (12%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IHA +  +     + +   L++      S+     +F+  T ++L  +N L+ G  +N  
Sbjct: 453 IHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNET 512

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
             + +  F  ML     PN  T+  + +S +SLS + LG+ +H  IVK+ ++ + FV   
Sbjct: 513 CDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTA 572

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L DMY +      A  +F+   +++    +  W V++ G ++ G   KAV+ F  M ++ 
Sbjct: 573 LVDMYAKNRFLEDAETIFNRLIKRD----LFAWTVIVAGYAQDGQGEKAVKCFIQMQREG 628

Query: 230 V-------ASWVS--------------------------------LIDGFMRKGDLKKAG 250
           V       AS +S                                L+D + + G ++ A 
Sbjct: 629 VKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAE 688

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            +F+ +  +  VSW  +I G+SQ+G+  KAL  F  MLD G   ++ T +  LSAC+ +G
Sbjct: 689 VVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMG 748

Query: 311 ALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTWTA 367
            +E G +  N +S   +G+   I     +VD+  + G          E K   ++L W  
Sbjct: 749 LIEEGKKHFNSLS-KIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWET 807

Query: 368 MIWGLAIHGRYE 379
           ++    +HG  E
Sbjct: 808 VLGACKMHGNIE 819


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  348 bits (892), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 202/633 (31%), Positives = 329/633 (51%), Gaps = 89/633 (14%)

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
           F  ++L  +N ++  L +N  F   + +   M+   V P+  T   V  + + L +L  G
Sbjct: 258 FEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTG 317

Query: 149 RGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           + LH   +K+G ++ ++FV   L DMY    +     +VFD   ++     + LWN +I 
Sbjct: 318 KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRK----IGLWNAMIT 373

Query: 208 GCSKIGYLRKAVELF-----------------GMMP----------KKNVASWV------ 234
           G ++  Y  +A+ LF                 G++P          K+ +  +V      
Sbjct: 374 GYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLD 433

Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF--F 285
                  +L+D + R G +  A  +F +M ++ +V+W  +I G+  +   E AL M    
Sbjct: 434 RDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKM 493

Query: 286 QMLD---------AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
           Q+L+           ++ N  T+++ L +CA + AL  G  +H Y   N+     A+G+A
Sbjct: 494 QILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSA 553

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LVDMYAKCG ++ +  VF +   ++++TW  ++    +HG  + AI   + MM  G +P+
Sbjct: 554 LVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPN 613

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-- 454
              F+++  AC +SG V   L  F +M+ DY +EPS  H+  VV+LL R G+  + YQ  
Sbjct: 614 EVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLI 673

Query: 455 -------NSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRW 487
                  +   +++ LL                    QL+P   S YVLL+NIY++ G W
Sbjct: 674 NLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLW 733

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
                VR  M+ + ++K+PG S+IE    VH+F AG   H  ++++   LE +    R++
Sbjct: 734 YKATEVRRNMKAQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKE 793

Query: 546 GYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY+P T  VLHN++E+++E L C HSEKLA+AFG++ T+PGT I++ K L +C DCH   
Sbjct: 794 GYIPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLAT 853

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+ SK+  REI+LRD  RFH+FK+GTCSC DYW
Sbjct: 854 KFISKVVDREIILRDVRRFHHFKNGTCSCGDYW 886



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 155/356 (43%), Gaps = 48/356 (13%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           L+R    ++  +  +  ++ M+ L ++P+   +P + K+VA L  + LG+ +H  + K G
Sbjct: 64  LLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFG 123

Query: 160 VEYDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
              D+    + L ++Y + G     +KVFD   E+N+    + WN LI+          A
Sbjct: 124 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQ----VSWNSLISSLCSFEKWEMA 179

Query: 219 VELFGMMPKKNV-------------ASWVSLIDGFM----------RKGDLK-------- 247
           +E F  M  ++V              S   + +G +          RKG+L         
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLV 239

Query: 248 ----KAGEL------FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
               K G+L            + +V+W  +++   QN +  +AL    +M+  GV  + F
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           T+ S L AC+ +  L  G  +H Y   N        +G+ALVDMY  C  + +   VF  
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDG 359

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSG 411
             ++ +  W AMI G A +   E+A+  F +M  S G   + T    ++ AC  SG
Sbjct: 360 MFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSG 415



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 110/246 (44%), Gaps = 19/246 (7%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N+ T   ++     S +  +   IH  ++   L     +   L+   S    ID A  I
Sbjct: 399 ANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRI 458

Query: 86  FDHFTPKNLHIFNVLIRG--LAENSHFQSCISHFVFML---------RLSVRPNRLTYPF 134
           F     ++L  +N +I G   +E       + H + +L         R+S++PN +T   
Sbjct: 459 FGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMT 518

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +  S A+LS L+ G+ +H   +K+ +  D  V   L DMY + G  + + KVFD+ P +N
Sbjct: 519 ILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRN 578

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAG 250
               V+ WNV++      G  + A+++  MM     K N  +++S+       G + +  
Sbjct: 579 ----VITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEGL 634

Query: 251 ELFEQM 256
           ++F  M
Sbjct: 635 KIFYNM 640



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/145 (22%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W  ++    ++    +A+  +  M+  G++ ++F   + L A A +  ++ G ++H ++ 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 324 CNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +G+    +   LV++Y KCG+  A   VF    E++ ++W ++I  L    ++E A+
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC 407
           + F+ M+    EP     +++  AC
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALAC 205


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  348 bits (892), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 210/664 (31%), Positives = 336/664 (50%), Gaps = 53/664 (7%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQ--IILHNLFASS-RITTQLISSASLHKS 78
           SH P++  +   +++   +      LR  HA+  ++LH    S+     +LI + +   +
Sbjct: 6   SHLPTSGESLLRLLAACRAPAHLPSLRAAHARLLVLLHPSHPSAAHANVKLIQAYAACSA 65

Query: 79  IDYALSIFDHFTPKNLH-----IFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLT 131
           +  A ++ +  +P          FNVLIR L  +S  +  +  F  M     +  P+  T
Sbjct: 66  LPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYT 125

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           YP   KS ++   L LG  +H  + K  ++ + +V      MY + G+   A++VFD  P
Sbjct: 126 YPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMP 185

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWVSLIDGFMRKG 244
            ++    V+ WN +I G +++G   +A+E+F       G MP     + +    G  +  
Sbjct: 186 HRD----VVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPD 241

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           D++    +F+ M  K ++SW AM+  ++ N    KA+ +F  M    V  +  T+ + L 
Sbjct: 242 DIRFVRRVFDNMQFKELISWNAMLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLP 301

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
            C ++ A   G R+H  I   +      +  AL+DMYA CG ++ A  +F     +D+++
Sbjct: 302 PCGELSAFSVGKRIHEIIKRKNMCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVIS 361

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           WT++I     HG   +A+  F+KM+  G EPD   F+A+L AC ++G +    ++FDSM 
Sbjct: 362 WTSIISAYGKHGHGREAVDLFEKMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMT 421

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------QNSQNSFTKLLQ----------- 465
             Y I P  +H+T +V+LL R G  ++ Y        + ++  +  LLQ           
Sbjct: 422 SRYHIIPKAEHYTCMVDLLGRAGCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIG 481

Query: 466 ---------LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
                    L P+    YVLLSN+YA  GRW DV  VR++M  + IKK PG S +E+   
Sbjct: 482 LVAADNLFSLVPEQTGYYVLLSNMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQ 541

Query: 517 VHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKL 573
           VH F  G   H  ++ I+ KL++++   R  GY P  E  LH+++EE KE+ L  HSEKL
Sbjct: 542 VHTFHIGDRCHPQSEMIYHKLDELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKL 601

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSC 632
           A+AF L+ T+PGT I++   L  C DCH   K  S I+ REIVL+DT R H+   G CSC
Sbjct: 602 AIAFLLLNTSPGTIIRVTMNLRTCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSC 661

Query: 633 RDYW 636
            DYW
Sbjct: 662 GDYW 665


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  347 bits (891), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 211/642 (32%), Positives = 323/642 (50%), Gaps = 78/642 (12%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIF----DHFT 90
           SL+H      Q+R  H   +   +F    ++ + L+++ +    +D A  +F    D   
Sbjct: 154 SLVHMYIKCNQIRDAHR--VFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGV 211

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             NL  +N +I G   +  +   +  F+ M      P+  T   V  +V  L  L +G  
Sbjct: 212 QPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGIL 271

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  ++K G+  D  V   L DMY +   T    +VFD+                     
Sbjct: 272 IHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQ--------------------- 310

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTA 266
                         M   +V S  + I G  R G ++ +  LF Q+ ++G    VVSWT+
Sbjct: 311 --------------MDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTS 356

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI   SQNG   +AL +F +M  AGV+ N  T+   L AC  + AL  G   H +     
Sbjct: 357 MIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRG 416

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                 +G+AL+DMYAKCG I+A+ + F     K+L+ W A+I G A+HG+ ++A++ F 
Sbjct: 417 ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFD 476

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
            M  SG +PD   F  +L+AC  SG  +    +F+SM   Y IE  V+H+  +V LLSR 
Sbjct: 477 LMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRA 536

Query: 447 GQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVLLS 478
           G+  Q Y                               + +  KL +L+P +P +Y+LLS
Sbjct: 537 GKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLS 596

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIYA++G W +V RVR +M+ + ++K+PG S+IEV   VH   AG   H    +I  KL+
Sbjct: 597 NIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLD 656

Query: 537 DIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLT 595
            +    ++ GY P   +VL +++E+ +E + C HSEKLA+ FGL+ T PG  ++++K L 
Sbjct: 657 KLSMEMKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLR 716

Query: 596 ICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           ICGDCH ++K+ S   +REI +RDT RFH+FK+G CSC DYW
Sbjct: 717 ICGDCHVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 107/417 (25%), Positives = 185/417 (44%), Gaps = 36/417 (8%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +++  T    L  ++ S  Q RQ HA I+   LF  + + T+L+S  + +     A  + 
Sbjct: 12  DSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVL 71

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D     N+  F+ LI   ++   F   +S F  ML   + P+    P   K+ A LS L 
Sbjct: 72  DLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALK 131

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             R +H +   SG + D+FV+  L  MY++  + R A +VFD   E +    V+ W+ L+
Sbjct: 132 PARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPD----VVSWSALV 187

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
              ++ G + +A  LF  M    V                           +  ++SW  
Sbjct: 188 AAYARQGCVDEAKRLFSEMGDSGV---------------------------QPNLISWNG 220

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI GF+ +G   +A+ MF  M   G   +  T+ S L A   +  L  G+ +H Y+    
Sbjct: 221 MIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQG 280

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                 + +AL+DMY KC      S VF +    D+ +  A I+GL+ +G+ E +++ F+
Sbjct: 281 LVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFR 340

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
           ++   G E +   + +++  C  +G+   AL  F  M+        VK ++V +  L
Sbjct: 341 QLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQI-----AGVKPNSVTIPCL 392



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 100/196 (51%), Gaps = 4/196 (2%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           + + +PE  V S++ +I  FS+  +   AL+ F QML  G+  ++  + SA+ ACA + A
Sbjct: 70  VLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSA 129

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           L+   +VH   S + F     + ++LV MY KC  I  A  VF    E D+++W+A++  
Sbjct: 130 LKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAA 189

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            A  G  ++A + F +M  SG +P+   +  ++    +SG    A+  F  M    F EP
Sbjct: 190 YARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGF-EP 248

Query: 432 SVKHHTVVVNLLSRVG 447
                T + ++L  VG
Sbjct: 249 D---GTTISSVLPAVG 261



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 135/307 (43%), Gaps = 26/307 (8%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S+    + +I +    + T ++ Q+  Q+   ++ + +     L  +  +  S+     +
Sbjct: 283 SDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQL 342

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
            D     N+  +  +I   ++N      +  F  M    V+PN +T P +  +  +++ L
Sbjct: 343 KDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAAL 402

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+  HC  ++ G+  D +V   L DMY + G+ + +   FD  P KN    ++ WN +
Sbjct: 403 MHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKN----LVCWNAV 458

Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---- 257
           I G +  G  ++A+E+F +M     K ++ S+  ++    + G  ++    F  M     
Sbjct: 459 IAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYG 518

Query: 258 -EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
            E  V  +  M+   S+ G+ E+A AM  +M    V  +         AC   GAL +  
Sbjct: 519 IEARVEHYACMVTLLSRAGKLEQAYAMIRRM---PVNPD---------ACVW-GALLSSC 565

Query: 317 RVHNYIS 323
           RVHN +S
Sbjct: 566 RVHNNVS 572


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 221/653 (33%), Positives = 347/653 (53%), Gaps = 81/653 (12%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK----SI 79
           KP + +  + + SLI    S  Q++Q HA     NL  +++IT  +I++  L      S+
Sbjct: 172 KPFHYVNHSKLSSLIDLCKSINQIKQTHA-----NLITTAQITLPVIANKFLKNVALASL 226

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
            YA  +FD     +L I+N +I+  + + H +   I+ F  ++R S   PNR ++ F   
Sbjct: 227 TYAHKLFDQIPQPDLFIYNTMIKSHSMSPHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFG 286

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +  +   +  G  +    VK G++ + FV                               
Sbjct: 287 ACGNGMCVREGEQVFTHAVKVGLDGNVFVV------------------------------ 316

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                N LI    K G +  A  +F     ++  SW ++I  ++  G++  A ELF++M 
Sbjct: 317 -----NALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMH 371

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           E+ VVSW+ +I G+ Q G   +AL  F +ML + V+ N++T+VSAL+AC+ + AL+ G  
Sbjct: 372 ERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVKPNEYTMVSALAACSNLVALDQGKW 431

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
           +H YI  ++  +   +  +L+DMYAKCG I++AS VF E K ++ +  W AMI G A+HG
Sbjct: 432 IHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMHG 491

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           + E+AI  F+KM      P+   F+A+L AC +   VK   ++F+ M  DY I P ++H+
Sbjct: 492 KPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEHY 551

Query: 437 TVVVNLLSRVG--QDSQG-----------------------YQNSQNSFTK---LLQLKP 468
             +V+LLSR G  +DS+                        Y++ +  +     + ++ P
Sbjct: 552 GCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEIDP 611

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI-KKDPGWSYIEVNGHVHRFEAG--GH 525
            H    VLL NIY+  GRW +   VR   +  S  KK PG+S IE+NG  H F  G   H
Sbjct: 612 NHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRSH 671

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTT 583
             ++EI+S L+++++  +  GY+P    VL +   +E+KE AL  HSEKLA+AFGL+ T 
Sbjct: 672 PQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNTA 731

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           PGT I+IVK L +CGDCH   K+ SK+  R I++RD  R+H+FKDG CSC+DY
Sbjct: 732 PGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 187/506 (36%), Positives = 289/506 (57%), Gaps = 36/506 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   YVQ G    A +VFDE P+K +    + +NV+I G ++   +    ELF
Sbjct: 249 DVFTWTAMVYAYVQDGMLDEARRVFDEMPQKRE----MSYNVMIAGYAQYKRMDMGRELF 304

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             MP  N+ SW  +I G+ + GDL +A  LF+ MP++  VSW A+I G++QNG  E+A+ 
Sbjct: 305 EEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMN 364

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           M  +M   G   N  T   ALSACA + ALE G +VH  +    +     +G ALV MY 
Sbjct: 365 MLVEMKRDGESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYC 424

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG I+ A  VF   + KD+++W  M+ G A HG   QA+  F+ M+ +G +PD    + 
Sbjct: 425 KCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVG 484

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQG------YQ 454
           +L+AC ++G       +F SM  DY I P+ KH+  +++LL R G  +++Q       ++
Sbjct: 485 VLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFE 544

Query: 455 NSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
               ++  LL                    +++P +   YVLLSN+YAA GRW DV+++R
Sbjct: 545 PDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMR 604

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             M++  ++K PG+S++EV   +H F  G   H     I++ LE++    + +GY+  T+
Sbjct: 605 LKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTK 664

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEK+  L  HSEKLA+AFG++    G  I+++K L +C DCH+ +K+ SKI 
Sbjct: 665 LVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIV 724

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            R I++RD+ R+H+F +G CSCRDYW
Sbjct: 725 GRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/238 (24%), Positives = 121/238 (50%), Gaps = 23/238 (9%)

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           + +++ V Y+A +  +L +    L +      +FD+ P K+    +  WN+++ G ++  
Sbjct: 59  MPLRNSVSYNAMISGYLRNAKFSLAR-----DLFDKMPHKD----LFSWNLMLTGYARNR 109

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
            LR A  LF  MP+K+V SW +++ G++R G + +A ++F++MP K  +SW  ++  + +
Sbjct: 110 RLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSISWNGLLAAYVR 169

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSA---LSACAKVGALEAGVRVHNYISCNDFGLK 330
           +G  E+A  +F          +D+ ++S    +    K   L    ++ + I   D    
Sbjct: 170 SGRLEEARRLFES-------KSDWELISCNCLMGGYVKRNMLGDARQLFDQIPVRDL--- 219

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
                 ++  YA+ G++  A  +F E+  +D+ TWTAM++     G  ++A + F +M
Sbjct: 220 -ISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVFDEM 276


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  347 bits (891), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/654 (32%), Positives = 335/654 (51%), Gaps = 73/654 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS---SASL 75
           I  S    +N+ ET  +S +   +  ++L+QIHA+++   L   S   T+ +S   S++ 
Sbjct: 4   ISCSFSLEHNLYET--MSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTS 61

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
              + YA  +FD F   +  ++N++IRG + +   +  +  +  ML  S   N  T+P +
Sbjct: 62  SDFLPYAQIVFDGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSL 121

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
            K+ ++LS       +H  I K G E D +    L + Y   G  + A  +FD  PE + 
Sbjct: 122 LKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDD 181

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
               + WN +I G  K G +  A+ LF  M +KN  SW ++I G++ + D+ K       
Sbjct: 182 ----VSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYV-QADMNK------- 229

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
                                  +AL +F +M ++ V  ++ ++ +ALSACA++GALE G
Sbjct: 230 -----------------------EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 266

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             +H+Y++     +   +G  L+DMYAKCG +E A  VF   K+K +  WTA+I G A H
Sbjct: 267 KWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYH 326

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G   +AI  F +M   G +P+   F A+LTAC Y+G V+     F SM  DY ++P+++H
Sbjct: 327 GHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEH 386

Query: 436 HTVVVNLLSRVGQDSQGYQNSQNSFTK----------------------------LLQLK 467
           +  +V+LL R G   +  +  Q    K                            L+ + 
Sbjct: 387 YGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAID 446

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           P H   YV  +NI+A + +W   A  R LM+ + + K PG S I + G  H F AG   H
Sbjct: 447 PYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSH 506

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTT 583
              ++I SK   +     E GY+P  E +L ++   +E+E  +  HSEKLA+ +GLI+T 
Sbjct: 507 PEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTK 566

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           PGT I+I+K L +C DCH + K  SKI +R+IV+RD TRFH+F+DG CSC DYW
Sbjct: 567 PGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 620


>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 652

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 203/581 (34%), Positives = 310/581 (53%), Gaps = 62/581 (10%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           + E H ISL+ S  +   L+++ AQII H    +  +   +++S    K + +A  +FDH
Sbjct: 65  VLEEHFISLLRSCKTVALLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDH 124

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
           F    + ++N + RG   N+ ++  +  F  M  + VRPN  T+P V KS A +     G
Sbjct: 125 FPDPKVELWNAISRGYFHNAFYREVVFLFGKMKSMDVRPNCFTFPLVLKSCAKIGAFVEG 184

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
             +HC ++K G+E + FV   L D+Y        A+K+F    E+N              
Sbjct: 185 EEIHCEVIKGGLEGNQFVATTLIDVYSGGRAIGSAYKLFVGMLERNIVAWTSMISGYILC 244

Query: 195 -------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
                            V+LWN++++G  +IG ++ A +LF  MP ++  SW ++++G+ 
Sbjct: 245 NRVALARRLFDLAPERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYA 304

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVV 300
             GD++   +LFE+MPE+ V SW  +I G++ NG   + L  F +ML D  V  ND T+V
Sbjct: 305 NNGDVEACEQLFEEMPERNVFSWNGLIGGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLV 364

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETK 358
           + LSACA++GAL+ G  VH Y +    G KG+I  G AL+DMY+KCG IE A  VF    
Sbjct: 365 TVLSACARLGALDLGKWVHVYAA--TIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMD 422

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KDL+TW +MI GLA HG    A+  F +M  +G +PDG  F+ +L +C + G V+   +
Sbjct: 423 LKDLITWNSMICGLATHGCGADALTLFHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTS 482

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------Y 453
           +F+SM  +Y I P ++H+  +V+L  R G   +                          Y
Sbjct: 483 YFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPMEADAVIWAALLGACRIY 542

Query: 454 QN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
           +N   ++ +  KL+ L+PK+P++YVLLSNIY   GRWKDVAR++ LM+    KK PG S 
Sbjct: 543 KNIDLAELALQKLIVLEPKNPANYVLLSNIYGDLGRWKDVARLKILMRDTGSKKLPGCSL 602

Query: 511 IEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
           IEVN  V  F +    H  +KEI+  L+ +M   R  GY P
Sbjct: 603 IEVNDSVVEFYSLDERHSQSKEIYGVLKGLMKLLRSFGYEP 643


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 227/676 (33%), Positives = 340/676 (50%), Gaps = 88/676 (13%)

Query: 40  SSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALS--IFDHFTP-KNLH 95
           S++S +  R +HA+I+   +      +   LI+   ++  +D+  S  +    TP +N+ 
Sbjct: 18  STSSMRLGRVVHARIVKTLDSPPPPFLANYLIN---MYSKLDHPESARLVLRLTPARNVV 74

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +  L+ GLA+N HF + +  F  M R  V PN  T+P V K+VASL L   G+ +H L 
Sbjct: 75  SWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVTGKQIHALA 134

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           VK G   D FV     DMY +      A K+FDE PE+N    +  WN  I+     G  
Sbjct: 135 VKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAYISNSVTDGRP 190

Query: 216 RKAVELF------GMMPKK---------------------------------NVASWVSL 236
           ++A+E F      G  P                                   +V+ +  L
Sbjct: 191 KEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDLGMQMHGLVFRSGFDTDVSVYNGL 250

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           ID + +   ++ +  +F +M  K  VSW +++  + QN E EKA  ++ +     V  +D
Sbjct: 251 IDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKEIVETSD 310

Query: 297 FTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           F + S LSACA +  LE G  +H +   +C +  +   +G+ALVDMY KCG IE +   F
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERNI--FVGSALVDMYGKCGCIEDSEQAF 368

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY--SGTEPDGTVFLAILTACWYSGQ 412
            E  EK+L+T  ++I G A  G+ + A+  F+ M     G  P+   F+++L+AC  +G 
Sbjct: 369 DEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSRAGA 428

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------Q 454
           V+  +  FDSM+  Y IEP  +H++ +V++L R G   Q +                  Q
Sbjct: 429 VENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWGALQ 488

Query: 455 NSQNSFTK----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
           N+     K          L +L PK   ++VLLSN +AA GRW +   VR  M+   IKK
Sbjct: 489 NACRMHGKPHLGILAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREEMKGVGIKK 548

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEK 562
             G+S+I V   VH F+A    HK+ KEI + L  +       GY P  +  L++++EE+
Sbjct: 549 GAGYSWITVKNQVHAFQAKDRSHKMNKEIQTMLTKLRNKMEAAGYKPDLKLSLYDLEEEE 608

Query: 563 EEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           + A +  HSEKLALAFGL+       I+I K L ICGDCHS  K+ S   +REI++RD  
Sbjct: 609 KAAEVSHHSEKLALAFGLVALPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNN 668

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH FKDG CSC+DYW
Sbjct: 669 RFHRFKDGICSCKDYW 684


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 202/654 (30%), Positives = 326/654 (49%), Gaps = 100/654 (15%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D + ++F+ F  +++  +N +I   +++  F   ++ F  M+   V  + +T   V  +
Sbjct: 247 VDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPA 306

Query: 139 VASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
            + L  L +G+ +H  ++++  +  ++FV   L DMY    +     +VFD    +    
Sbjct: 307 CSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRR--- 363

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWV---------------- 234
            + LWN +I+G ++ G   KA+ LF       G++P     + V                
Sbjct: 364 -IELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESI 422

Query: 235 -----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                            +L+D + R G +  +  +F+ M  +  VSW  MI G+  +G  
Sbjct: 423 HGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRY 482

Query: 278 EKALAMFFQM-----------------LDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
             AL +  +M                      + N  T+++ L  CA + A+  G  +H 
Sbjct: 483 SNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHA 542

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y   N       +G+ALVDMYAKCG +  +  VF E   K+++TW  +I    +HG+ E+
Sbjct: 543 YAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEE 602

Query: 381 AIQYFKKMMYSG-----TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           A++ FK M+         +P+   F+ +  AC +SG +   LN F  M+ D+ +EP+  H
Sbjct: 603 ALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDH 662

Query: 436 HTVVVNLLSRVGQDSQGY--------------------------QN---SQNSFTKLLQL 466
           +  VV+LL R GQ  + Y                          QN    + +   LL L
Sbjct: 663 YACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHL 722

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
           +P   S YVLLSNIY++ G W     VR  M++  +KK+PG S+IE    VH+F AG   
Sbjct: 723 EPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVS 782

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTT 583
           H  ++++H  LE +    R++GY+P T  VLHN+ E+++E L C HSEKLA+AFG++ T 
Sbjct: 783 HPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTP 842

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           PGTTI++ K L +C DCH+  K+ SKI +REI++RD  RFH+FK+GTCSC DYW
Sbjct: 843 PGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 48/351 (13%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           +R    ++ F+  IS ++ M     RP+   +P V K+V+ L  L  G  +H   VK G 
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 161 EYDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
              +    + L +MY + G      KVFD   ++++    + WN  I    +     +A+
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQ----VSWNSFIAALCRFEKWEQAL 179

Query: 220 ELFGMMPKKNV-------------ASWVSLIDGF----------MRKGDLK--------- 247
           E F  M  +N+              S + ++ G           +R GD K         
Sbjct: 180 EAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQKTFTNNALMA 239

Query: 248 ---KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
              K G       LFE   ++ +VSW  MI+ FSQ+    +ALA F  M+  GV  +  T
Sbjct: 240 MYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVT 299

Query: 299 VVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           + S L AC+ +  L+ G  +H Y+   ND      +G+ALVDMY  C  +E+   VF   
Sbjct: 300 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI 359

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTAC 407
             + +  W AMI G A +G  E+A+  F +M+  +G  P+ T   +++ AC
Sbjct: 360 LGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           P +   SW   +   +++ +  +A++ + +M  +G R ++F   + L A + +  L+ G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 317 RVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           ++H       +G     +   LV+MY KCG I     VF    ++D ++W + I  L   
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            ++EQA++ F+ M     E      +++  AC
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALAC 204


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 217/692 (31%), Positives = 349/692 (50%), Gaps = 105/692 (15%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K  R +   I   NLF+       L+S+ S    +     +FD     ++  +N L+ G 
Sbjct: 57  KNARNVFDHIPQPNLFS----WNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGY 112

Query: 105 AENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           A N      +  +  ML+  SV  NR+T+  +    ++   + LGR +H  I K G +  
Sbjct: 113 AGNGLISESVRVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSY 172

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KS 196
            FV   L DMY + G    A ++F+E PEKN                             
Sbjct: 173 LFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPE 232

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMP------------------------------ 226
           +  + W  +I G ++ G  ++AV+ F  M                               
Sbjct: 233 KDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQI 292

Query: 227 ---------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                    + N+    +L+D + +  ++K A  +F +M  K V+SWTAM+ G+ QNG +
Sbjct: 293 HAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYS 352

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           E+A+ +F  M    +  +DFT+ S +S+CA + +LE G + H     +       +  AL
Sbjct: 353 EEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNAL 412

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           + +Y KCG++E A  +F E K +D ++WTA++ G A  G+  + I  F+ M+  G  PDG
Sbjct: 413 ITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDG 472

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN 455
             F+ +L+AC  +G V+   ++F+ M  ++ I P   H+T +++LLSR G  ++++ + N
Sbjct: 473 VTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFIN 532

Query: 456 SQNSFT---------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWK 488
            Q  F+                            L +L+P++P+SY+LLS+IYAA+G+W 
Sbjct: 533 -QMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWD 591

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQG 546
           DVA++R  M+   +KK+PG S+I+    VH F A       + +I++KLE +     E+G
Sbjct: 592 DVAKLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEG 651

Query: 547 YMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMK 605
           Y+P   +VLH++ K EK + L  HSEKLA+AFGL+    G  I++VK L +CGDCH+  K
Sbjct: 652 YVPDMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATK 711

Query: 606 YASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           Y S+I+QREI++RD  RFH FKDG CSC D+W
Sbjct: 712 YISRITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score = 44.3 bits (103), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 97/239 (40%), Gaps = 7/239 (2%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           ++ T   +IS   +  S ++  Q H Q +   L     ++  LI+      S+++A  +F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLF 429

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                ++   +  L+ G A+       IS F  ML   + P+ +T+  V  + +   L+ 
Sbjct: 430 HEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVE 489

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G     C++ +  +         + D+  + G+   A    ++ P    S   + W  L
Sbjct: 490 KGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMP---FSPDAIGWATL 546

Query: 206 INGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           ++ C   G L   + A E    +  +N AS++ L   +  KG      +L + M E GV
Sbjct: 547 LSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGV 605


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 210/643 (32%), Positives = 330/643 (51%), Gaps = 81/643 (12%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPK 92
           I+L+ S  + K++RQIHA++ +        +    + + +L  HK +DYA  I D     
Sbjct: 10  IALLDSGITFKEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKP 69

Query: 93  NLHIFNVLIRGLAENSHFQSCISH--FVFMLRL-----SVRPNRLTYPFVSKSVASLSLL 145
            L   N +IR     +H +S +    F F  R+      ++P+  T  F+ ++   L + 
Sbjct: 70  TLFALNSMIR-----AHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMR 124

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  +H + ++ G + D  V+  L  +Y +LG                           
Sbjct: 125 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELG--------------------------C 158

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           ++ C K+         F  +P  +     +++    R GD+  A +LFE MPE+  ++W 
Sbjct: 159 LDSCHKV---------FNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWN 209

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI+G++Q GE+ +AL +F  M   GV+ N   ++S LSAC ++GAL+ G   H+YI  N
Sbjct: 210 AMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERN 269

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              +   + T LVD+YAKCG++E A  VF   +EK++ TW++ + GLA++G  E+ ++ F
Sbjct: 270 KIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELF 329

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
             M   G  P+   F+++L  C   G V      FDSMR ++ IEP ++H+  +V+L +R
Sbjct: 330 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYAR 389

Query: 446 VGQ-------------------------DSQGYQNSQNSF---TKLLQLKPKHPSSYVLL 477
            G+                          S+ Y+N +       K+L+L+  +  +YVLL
Sbjct: 390 AGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLL 449

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           SNIYA    W +V+ VR  M+ + ++K PG S +EVNG VH F  G   H    +I +  
Sbjct: 450 SNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVW 509

Query: 536 EDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           +DI    R  GY   T  V+ +I +EEKE+AL  HSEK A+AFG++       I+IVK L
Sbjct: 510 KDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNL 569

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +CGDCH +    SKI  REI++RD  RFH+FKDG CSC  +W
Sbjct: 570 RVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/243 (20%), Positives = 102/243 (41%), Gaps = 15/243 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +    ++S      +  Q R  H+ I  + +  + R+ T L+   +    ++ A+ +F
Sbjct: 239 NGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVF 298

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                KN++ ++  + GLA N   + C+  F  M +  V PN +T+  V +  + +  + 
Sbjct: 299 WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVD 358

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G R    +  + G+E        L D+Y + G+   A  +  + P K  +    +W+ L
Sbjct: 359 EGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAA---VWSSL 415

Query: 206 INGCSKIGYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           ++       + K +EL  +  KK       N  ++V L + +    D      + + M  
Sbjct: 416 LHA----SRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKS 471

Query: 259 KGV 261
           KGV
Sbjct: 472 KGV 474


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/681 (30%), Positives = 348/681 (51%), Gaps = 81/681 (11%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T T ++ L  +       R +HAQ+    L   +   T L +  +  +    A  +FD  
Sbjct: 227 TFTSLLKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRM 286

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLG 148
             ++   +N L+ G A N   ++ +   V M      RP+ +T   V  + A    L   
Sbjct: 287 PARDRVAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGAC 346

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           R +H   V+ G +    V   + D+Y + G    A KVFD   ++N     + WN +I G
Sbjct: 347 REVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNS----VSWNAMIKG 402

Query: 209 -----------------------------------CSKIGYLRKAVELFGMMPKKNVASW 233
                                              C ++G+L +   +  ++ +  + S 
Sbjct: 403 YAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVRIGLESN 462

Query: 234 VSLIDGFM------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           V++++  +      ++ DL  A ++F+++  K  VSW AMI G +QNG +E A+ +F +M
Sbjct: 463 VNVMNALITMYCKCKRTDL--AAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRM 520

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
               V+ + FT+VS + A A +        +H Y           + TAL+DMYAKCG +
Sbjct: 521 QLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRV 580

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             A  +F   +++ ++TW AMI G   HG  + A++ F++M  SG  P+ T FL++L+AC
Sbjct: 581 SIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSAC 640

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------------- 453
            ++G V     +F SM+ DY +EP ++H+  +V+LL R G+  + +              
Sbjct: 641 SHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISV 700

Query: 454 --------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                         + ++ S  ++ +L+P+    +VLL+NIYA    WKDVARVRT M++
Sbjct: 701 YGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEK 760

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + ++K PGWS +++   +H F +G   H+ AK+I+++L  ++   +  GY+P T+ + H+
Sbjct: 761 KGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HD 819

Query: 558 IKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++++ K + L  HSEKLA+A+GLI+T PGTTI+I K L +C DCH+  K  S ++ REI+
Sbjct: 820 VEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREII 879

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+FKDG CSC DYW
Sbjct: 880 MRDIQRFHHFKDGKCSCGDYW 900



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 168/362 (46%), Gaps = 52/362 (14%)

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLS 146
           H  P + H     +R  A  S  +  ++ F  M   S   P   T+  + K  A+ + L+
Sbjct: 186 HAAPDDHH---ARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLA 242

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  +   G+  +A     LA+MY +  +   A +VFD  P +++    + WN L+
Sbjct: 243 TGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDR----VAWNALV 298

Query: 207 NGCSKIGYLR-----------------KAVELFGMMP----------------------- 226
            G ++ G                     AV L  ++P                       
Sbjct: 299 AGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGF 358

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            + V    +++D + + G +  A ++F+ M ++  VSW AMI G+++NG+A +ALA+F +
Sbjct: 359 DEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKR 418

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT--ALVDMYAKC 344
           M+  GV   D +V++AL AC ++G L+ G RVH  +     GL+  +    AL+ MY KC
Sbjct: 419 MVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLV--RIGLESNVNVMNALITMYCKC 476

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
              + A+ VF E   K  ++W AMI G   +G  E A++ F +M     +PD    ++I+
Sbjct: 477 KRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSII 536

Query: 405 TA 406
            A
Sbjct: 537 PA 538



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 2/144 (1%)

Query: 266 AMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           A +   +   +   ALA F  M  A G      T  S L  CA    L  G  VH  ++ 
Sbjct: 194 ARLRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAA 253

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
                +    TAL +MYAKC     A  VF     +D + W A++ G A +G  E A+  
Sbjct: 254 RGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGM 313

Query: 385 FKKMM-YSGTEPDGTVFLAILTAC 407
             +M    G  PD    +++L AC
Sbjct: 314 VVRMQEEDGERPDAVTLVSVLPAC 337


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 337/674 (50%), Gaps = 75/674 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +++    S +    RQ+HA ++             L+        +D A  IF+     +
Sbjct: 115 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 174

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +N LI G   N H    I   + M    + PN      + K+ A      LGR +H 
Sbjct: 175 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHG 234

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K+  + D ++ V L DMY +      A KVFD    ++    ++LWN LI+GCS  G
Sbjct: 235 FMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRD----LILWNALISGCSHGG 290

Query: 214 YLRKAVELFGMMPK--------------KNVASWVS------------------------ 235
              +A  +F  + K              K+ AS  +                        
Sbjct: 291 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 350

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID + +   L  A  +FE+     +++ T+MI   SQ    E A+ +F +ML  G+  
Sbjct: 351 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP 410

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F + S L+ACA + A E G +VH ++    F      G ALV  YAKCG+IE A L F
Sbjct: 411 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 470

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               E+ +++W+AMI GLA HG  ++A++ F +M+  G  P+     ++L AC ++G V 
Sbjct: 471 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 530

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQN-------- 458
            A  +F+SM+  + I+ + +H++ +++LL R G+        +S  +Q + +        
Sbjct: 531 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGA 590

Query: 459 ------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                       +  KL  L+P+   ++VLL+N YA+ G W +VA+VR LM+  +IKK+P
Sbjct: 591 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEP 650

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKE 563
             S++EV   VH F  G   H + KEI+SKL+++     + GY+P  +  LH++ + EKE
Sbjct: 651 AMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKE 710

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSE+LA+AF L+ T PG  I++ K L IC DCH   K+ S I  REI++RD  RF
Sbjct: 711 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRF 770

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DGTCSC DYW
Sbjct: 771 HHFRDGTCSCGDYW 784



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 173/399 (43%), Gaps = 44/399 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAEN 107
           Q+HA  +     +   +   L++       +D A  +FD   + +N   +N L+    +N
Sbjct: 28  QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 87

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M+   ++P    +  V  +      +  GR +H ++V+ G E D F  
Sbjct: 88  DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 147

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMYV++G+   A  +F++ P+ +    V+ WN LI+GC   G+  +A+EL      
Sbjct: 148 NALVDMYVKMGRVDIASVIFEKMPDSD----VVSWNALISGCVLNGHDHRAIELLLQMKS 203

Query: 223 ------------------------------GMMPKKNVAS----WVSLIDGFMRKGDLKK 248
                                         G M K N  S     V L+D + +   L  
Sbjct: 204 SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 263

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F+ M  + ++ W A+I+G S  G  ++A ++F+ +   G+  N  T+ + L + A 
Sbjct: 264 AMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTAS 323

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + A  A  +VH       F     +   L+D Y KC  +  A  VF E    D++  T+M
Sbjct: 324 LEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSM 383

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I  L+     E AI+ F +M+  G EPD  V  ++L AC
Sbjct: 384 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 422



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 141/318 (44%), Gaps = 45/318 (14%)

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N    P V K V    L   G  +H + + +G   D FV   L  MY   G    A +VF
Sbjct: 9   NEFALPVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVF 65

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP--------------------- 226
           DE   +  + S   WN L++   K      A+++FG M                      
Sbjct: 66  DEAGSERNAVS---WNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGS 122

Query: 227 ------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                             +K+V +  +L+D +++ G +  A  +FE+MP+  VVSW A+I
Sbjct: 123 RNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALI 182

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           +G   NG   +A+ +  QM  +G+  N F + S L ACA  GA + G ++H ++   +  
Sbjct: 183 SGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANAD 242

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               IG  LVDMYAK   ++ A  VF     +DL+ W A+I G +  GR+++A   F  +
Sbjct: 243 SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL 302

Query: 389 MYSGTEPDGTVFLAILTA 406
              G   + T   A+L +
Sbjct: 303 RKEGLGVNRTTLAAVLKS 320



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 98/184 (53%), Gaps = 4/184 (2%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           V++  GF   G +  A  +F++   E+  VSW  +++ + +N +   A+ +F +M+ +G+
Sbjct: 49  VAMYGGF---GFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGI 105

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           +  +F     ++AC     ++AG +VH  +    +        ALVDMY K G ++ AS+
Sbjct: 106 QPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASV 165

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F +  + D+++W A+I G  ++G   +AI+   +M  SG  P+  +  +IL AC  +G 
Sbjct: 166 IFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGA 225

Query: 413 VKLA 416
             L 
Sbjct: 226 FDLG 229



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 4/118 (3%)

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           GV  N+F +   L     V   + G +VH       FG    +  ALV MY   G ++ A
Sbjct: 5   GVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDA 61

Query: 351 SLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             VF E   E++ ++W  ++     + +   AIQ F +M++SG +P    F  ++ AC
Sbjct: 62  RRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNAC 119


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 207/688 (30%), Positives = 351/688 (51%), Gaps = 76/688 (11%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S HK S+  T  H+I     +    + +Q+HA +I      ++ ++   ++  S    +D
Sbjct: 68  SGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELD 127

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           Y + +FD  + +N+  +  +I G A NS FQ  +S F  M        +     V ++  
Sbjct: 128 YTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACT 187

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           SL  +  G  +HCL+VK G   + FV  +L DMY + G+   A K F+E P K+     +
Sbjct: 188 SLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKD----AV 243

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVS------------------ 235
           LW  +I+G  K G  +KA+  +  M   +V        S +S                  
Sbjct: 244 LWTSMIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATI 303

Query: 236 --------------LIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKA 280
                         L D + + GD+  A  +F+   +   +VS TA+I+G+ +  + EKA
Sbjct: 304 LKLGFEYETFIGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKA 363

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           L+ F  +   G+  N+FT  S + ACA    LE G ++H  +   +F     + + LVDM
Sbjct: 364 LSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDM 423

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y KCG  + +  +F E +  D + W  ++   + HG    AI+ F  M++ G +P+   F
Sbjct: 424 YGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTF 483

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNSQ- 457
           + +L  C ++G V+  LN+F SM   Y + P  +H++ V++LL R G+  +++ + N+  
Sbjct: 484 VNLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMP 543

Query: 458 ---NSF----------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
              N F                       KL++L+P++  ++VLLSNIYA E +W+DV  
Sbjct: 544 FEPNVFGWCSFLGACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQS 603

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPG 550
           +R +++  ++ K PG+S++++    H F  E   H   KEI+ KL++++   +  GY+P 
Sbjct: 604 LRKMIKDGNMNKLPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQ 663

Query: 551 TEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
           TE VL ++ +  KE+ L  HSE++A+AF L+    G  I + K L +C DCHS +K+ SK
Sbjct: 664 TESVLIDMDDNLKEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISK 723

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +++R I++RD +RFH+F +G+CSC DYW
Sbjct: 724 VTERNIIVRDISRFHHFSNGSCSCGDYW 751



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 43/251 (17%), Positives = 104/251 (41%), Gaps = 36/251 (14%)

Query: 1   MKGHV-FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+V  +++  A++   +++      N  T T +I    +    +   Q+H Q++  N 
Sbjct: 351 IDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNF 410

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
                +++ L+         D+++ +FD     +   +N L+   +++   ++ I  F  
Sbjct: 411 KRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNG 470

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M+   ++PN +T+  + K  +           H  +V+ G+ Y + +             
Sbjct: 471 MIHRGLKPNAVTFVNLLKGCS-----------HAGMVEDGLNYFSSME------------ 507

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-KKNVASWVSLID 238
                K++   P++        ++ +I+   + G L++A +    MP + NV  W S + 
Sbjct: 508 -----KIYGVVPKEEH------YSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLG 556

Query: 239 GFMRKGDLKKA 249
                GD+++A
Sbjct: 557 ACKIHGDMERA 567


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 211/628 (33%), Positives = 321/628 (51%), Gaps = 71/628 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIFDHFTPKNLHIFNVLI 101
           ++L+QIHA+++   L   S   T+ +S      S D   YA  +FD F   +  ++N++I
Sbjct: 57  EELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 116

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
           RG + +   +  +  +  ML  S   N  T+P + K+ ++LS L     +H  I K G E
Sbjct: 117 RGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYE 176

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
            D +                                     N LIN  +  G  + A  L
Sbjct: 177 NDVYAV-----------------------------------NSLINSYAATGNFKLAHLL 201

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           F  +PK +  SW S+I G+ + G +  A  LF +M EK  +SWT MI+G+ Q G  ++AL
Sbjct: 202 FDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEAL 261

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            +F +M ++ V  ++ ++ +ALSACA++GALE G  +H+Y++     +   +G  L+DMY
Sbjct: 262 QLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMY 321

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AKCG++  A  VF   + K +  WTA+I G A HG   +AI  F +M   G +P+   F 
Sbjct: 322 AKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFT 381

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
            +LTAC Y+G V+     F +M  DY ++P+++H+  VV+LLSR G   +  +  Q    
Sbjct: 382 TVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPL 441

Query: 462 K----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
           K                            L+ + P H   YV  +NI+A   +W   A  
Sbjct: 442 KPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAET 501

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMP-- 549
           R LM+ + + K PG S I + G  H F AG   H   ++I SK + +     E GY+P  
Sbjct: 502 RRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPEL 561

Query: 550 GTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
               +     +E+E  +  HSEKLA+ +GLI+T PGTTI+I+K L +C DCH + K  SK
Sbjct: 562 EDMLLDLVDDDERETIVHQHSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISK 621

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I +R+IV+RD TRFH+F+DG CSC DYW
Sbjct: 622 IYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 107/267 (40%), Gaps = 39/267 (14%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQII-------------LHNLFASS-------- 63
           P N  T   ++    + ++ ++  QIHAQI              L N +A++        
Sbjct: 141 PHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHL 200

Query: 64  ---RIT-------TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113
              RI          +I   +    +D AL++F     KN   +  +I G  +    +  
Sbjct: 201 LFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEA 260

Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
           +  F  M    V P+ ++      + A L  L  G+ +H  + K+ +  D+ +   L DM
Sbjct: 261 LQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDM 320

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKN 229
           Y + G    A +VF     K    SV  W  LI+G +  G+ R+A+  F  M     K N
Sbjct: 321 YAKCGDMGEALEVFKNIQRK----SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQM 256
           V ++ +++      G +++   +F  M
Sbjct: 377 VITFTTVLTACSYTGLVEEGKLIFYNM 403


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 337/674 (50%), Gaps = 75/674 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +++    S +    RQ+HA ++             L+        +D A  IF+     +
Sbjct: 208 VVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSD 267

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +N LI G   N H    I   + M    + PN      + K+ A      LGR +H 
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHG 327

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K+  + D ++ V L DMY +      A KVFD    ++    ++LWN LI+GCS  G
Sbjct: 328 FMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRD----LILWNALISGCSHGG 383

Query: 214 YLRKAVELFGMMPK--------------KNVASWVS------------------------ 235
              +A  +F  + K              K+ AS  +                        
Sbjct: 384 RHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN 443

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID + +   L  A  +FE+     +++ T+MI   SQ    E A+ +F +ML  G+  
Sbjct: 444 GLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F + S L+ACA + A E G +VH ++    F      G ALV  YAKCG+IE A L F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               E+ +++W+AMI GLA HG  ++A++ F +M+  G  P+     ++L AC ++G V 
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQN-------- 458
            A  +F+SM+  + I+ + +H++ +++LL R G+        +S  +Q + +        
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGA 683

Query: 459 ------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                       +  KL  L+P+   ++VLL+N YA+ G W +VA+VR LM+  +IKK+P
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEP 743

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKE 563
             S++EV   VH F  G   H + KEI+SKL+++     + GY+P  +  LH++ + EKE
Sbjct: 744 AMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKE 803

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSE+LA+AF L+ T PG  I++ K L IC DCH   K+ S I  REI++RD  RF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRF 863

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DGTCSC DYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 172/396 (43%), Gaps = 49/396 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAEN 107
            +HA ++     AS R    LIS  S  +    A  +FD   P   H+ ++ L+   + N
Sbjct: 25  HLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRVFDEI-PDPCHVSWSSLVTAYSNN 81

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +S I  F  M    V  N    P V K V    L   G  +H + + +G   D FV 
Sbjct: 82  GLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL---GAQVHAMAMATGFGSDVFVA 138

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
             L  MY   G    A +VFDE   +  + S   WN L++   K      A+++FG M  
Sbjct: 139 NALVAMYGGFGFMDDARRVFDEAGSERNAVS---WNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 227 --------------------------------------KKNVASWVSLIDGFMRKGDLKK 248
                                                 +K+V +  +L+D +++ G +  
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDI 255

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +FE+MP+  VVSW A+I+G   NG   +A+ +  QM  +G+  N F + S L ACA 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAG 315

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            GA + G ++H ++   +      IG  LVDMYAK   ++ A  VF     +DL+ W A+
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNAL 375

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           I G +  GR+++A   F  +   G   + T   A+L
Sbjct: 376 ISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVL 411



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 147/322 (45%), Gaps = 50/322 (15%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +++  A+ +LL  G  LH  ++KSG  + A +R HL   Y +  +   A +VFDE P+  
Sbjct: 11  LTRYAAAQALLP-GAHLHANLLKSG--FLASLRNHLISFYSKCRRPCCARRVFDEIPDPC 67

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------- 231
                + W+ L+   S  G  R A++ F  M  + V                        
Sbjct: 68  H----VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQLGAQVH 123

Query: 232 ----------------SWVSLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQN 274
                           + V++  GF   G +  A  +F++   E+  VSW  +++ + +N
Sbjct: 124 AMAMATGFGSDVFVANALVAMYGGF---GFMDDARRVFDEAGSERNAVSWNGLMSAYVKN 180

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            +   A+ +F +M+ +G++  +F     ++AC     ++AG +VH  +    +       
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 240

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            ALVDMY K G ++ AS++F +  + D+++W A+I G  ++G   +AI+   +M  SG  
Sbjct: 241 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLV 300

Query: 395 PDGTVFLAILTACWYSGQVKLA 416
           P+  +  +IL AC  +G   L 
Sbjct: 301 PNVFMLSSILKACAGAGAFDLG 322


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 206/632 (32%), Positives = 331/632 (52%), Gaps = 77/632 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +IS    +  +  A  +FD    +N+  +  ++RG  +    +     F  M R +V   
Sbjct: 89  MISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNV--- 145

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +++  +   +   S +   + L  +I     E D  V  ++   Y Q+G+   A ++FD
Sbjct: 146 -VSWTVMIGGLLKESRIDDAKKLFDMIP----EKDVVVVTNMIGGYCQVGRLDEARELFD 200

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
           E   +N    V  W  +++G +K G +  A +LF +MP++N  SW +++ G+ + G +K+
Sbjct: 201 EMKVRN----VFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKE 256

Query: 249 AGELFEQMPEKGVV-------------------------------SWTAMINGFSQNGEA 277
           A ELFE MP K +V                               +W AMI  F + G  
Sbjct: 257 AFELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLD 316

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +AL +F +M   GV  N  +++S LS CA + +L+ G +VH  +  ++F     + + L
Sbjct: 317 LEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVL 376

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           + MY KCG++  A  +F     KD++ W +MI G + HG  E+A+  F  M  SG +PD 
Sbjct: 377 ITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDE 436

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--- 454
             F+ +L+AC YSG+VK     F++M+  Y +EP ++H+  +V+LL R G+  +  +   
Sbjct: 437 VTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVE 496

Query: 455 -------------------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                                     ++ +  KL +L+PK+   YVLLS++YA +GRW+D
Sbjct: 497 KMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRD 556

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIH---SKLEDIMAGAREQG 546
           V  +R  + RR IK  PG S+IEV   VH F  G  K   E H     LE +    RE G
Sbjct: 557 VEVLRKKINRRVIKF-PGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAG 615

Query: 547 YMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMK 605
           Y P   +VLH++ +EEK  +LG HSE+LA+A+GL++   G  I+++K L +CGDCHS +K
Sbjct: 616 YCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIK 675

Query: 606 YASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             +K++ REI+LRD  RFH+FKDG+CSC+D+W
Sbjct: 676 LIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 132/256 (51%), Gaps = 14/256 (5%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y ++G    A KVFD TP   ++  +  WN +++   +    R A+ LF  MP++N  S+
Sbjct: 29  YGRIGDIHNARKVFDNTPLPQRT--IASWNAMVSAYFESHKPRDALLLFDQMPQRNTVSF 86

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             +I G+++ G +  A ++F+ MPE+ VVSWT+M+ G+ Q G  E+A  +F++M     R
Sbjct: 87  NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM----PR 142

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  +    +    K   ++   ++ + I   D      + T ++  Y + G ++ A  +
Sbjct: 143 RNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV----VVVTNMIGGYCQVGRLDEAREL 198

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E K +++ TWT M+ G A +GR + A + F+ M     E +   + A+L     SG++
Sbjct: 199 FDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVM----PERNEVSWTAMLMGYTQSGRM 254

Query: 414 KLALNFFDSMRFDYFI 429
           K A   F++M   + +
Sbjct: 255 KEAFELFEAMPVKWIV 270



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 144/338 (42%), Gaps = 64/338 (18%)

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
           HK  D AL +FD    +N   FN +I G  +N         F       V P R      
Sbjct: 66  HKPRD-ALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVF------DVMPER------ 112

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG------KTRGAFKVFDE 189
             +V S + +  G     ++ ++   +    R ++    V +G      +   A K+FD 
Sbjct: 113 --NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDM 170

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
            PEK+    V++   +I G  ++G L +A ELF  M  +NV +W +++ G+ + G +  A
Sbjct: 171 IPEKD----VVVVTNMIGGYCQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVA 226

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            +LFE MPE+  VSWTAM+ G++Q+G  ++A  +F  M                      
Sbjct: 227 RKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM---------------------- 264

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
                   V   ++CN+  L+          +   G +  A ++F   KE+D  TW AMI
Sbjct: 265 -------PVKWIVACNEMILQ----------FGLAGEMHRARMMFEGMKERDEGTWNAMI 307

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                 G   +A+  F +M   G   +    +++L+ C
Sbjct: 308 KVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVC 345



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 14/215 (6%)

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ--MPEKGVVSWTAMIN 269
           +GY   A     M+  +++ S  S I  + R GD+  A ++F+   +P++ + SW AM++
Sbjct: 1   MGYGYAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVS 60

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            + ++ +   AL +F QM     + N  +    +S   K G +    +V + +   +   
Sbjct: 61  AYFESHKPRDALLLFDQM----PQRNTVSFNGMISGYVKNGMVADARKVFDVMPERNV-- 114

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
                T++V  Y + G +E A  +F E   +++++WT MI GL    R + A + F  + 
Sbjct: 115 --VSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMI- 171

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
               E D  V   ++      G++  A   FD M+
Sbjct: 172 ---PEKDVVVVTNMIGGYCQVGRLDEARELFDEMK 203



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 118/270 (43%), Gaps = 17/270 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N ++ T ++     S   K+  ++   + +  + A + +  Q   +  +H+    A  +F
Sbjct: 237 NEVSWTAMLMGYTQSGRMKEAFELFEAMPVKWIVACNEMILQFGLAGEMHR----ARMMF 292

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    ++   +N +I+           +  F  M R  V  N  +   V    ASL+ L 
Sbjct: 293 EGMKERDEGTWNAMIKVFERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLD 352

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  +V+S  + D +V   L  MYV+ G    A  +F+    K+    V++WN +I
Sbjct: 353 HGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKD----VVMWNSMI 408

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP----- 257
            G S+ G   +A+ +F  M    V     +++ ++      G +K+  E+FE M      
Sbjct: 409 TGYSQHGLGEEALNVFHDMCSSGVQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQV 468

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           E G+  +  M++   + G  ++A+ +  +M
Sbjct: 469 EPGIEHYACMVDLLGRAGRVDEAMELVEKM 498


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 233/686 (33%), Positives = 342/686 (49%), Gaps = 135/686 (19%)

Query: 15  PTTNIKSSHKPSNNITETHI-ISLIHSSNSTKQLRQIHAQII---LHNL-FASSRITTQL 69
           PT + + +  P   + + H  ++L+ +  S + L+QIH+QII   LHN  FA S++    
Sbjct: 15  PTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLHNTQFALSKLIE-- 72

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
             + S   ++ YAL +F+     N  I+N +IRG + +S     I  +V ML   V PN 
Sbjct: 73  FCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNS 132

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT--------- 180
            T+PF+ KS A +     G+ +H  ++K G+E D FV   L +MY Q G+          
Sbjct: 133 YTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSK 192

Query: 181 ------------------RG----AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
                             RG    A ++F+E P ++     + WN +I G ++ G   +A
Sbjct: 193 SSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRD----AVSWNAMIAGYAQSGRFEEA 248

Query: 219 VELFGMMPKKNVA--------------------------SWV-------------SLIDG 239
           +  F  M + NVA                          SW+             +LID 
Sbjct: 249 LAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDM 308

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + + GDL KA +LFE + EK ++SW  MI G+S     ++ALA+F +M  + V  ND T 
Sbjct: 309 YSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTF 368

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETK 358
           VS L ACA +GAL+ G  +H YI     GL   ++ T+L+DMYAKCGNIEAA  VF   K
Sbjct: 369 VSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMK 428

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            K L +W AMI GLA+HG    A++ F++M   G EPD   F+ +L+AC ++G V+L   
Sbjct: 429 PKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------- 462
            F SM  DY I P ++H+  +++LL R G   +     +N   K                
Sbjct: 489 CFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVH 548

Query: 463 ------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                       L +L+P++P +YVLLSNIYA  GRW DVAR+RT +  + +KK      
Sbjct: 549 GNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK------ 602

Query: 511 IEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQ-GYMPGTEWVLHNIKEE-KEEALGC 568
                             ++I+  L++I     E+ G +P T  VL+++ EE KE +L  
Sbjct: 603 -----------------XQDIYKMLDEIDQSFGERPGXVPDTSEVLYDMDEEWKEGSLSH 645

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKL 594
           HSEKLA+AFGLI T P TTI+IVK L
Sbjct: 646 HSEKLAIAFGLISTKPETTIRIVKNL 671



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 77/318 (24%), Positives = 142/318 (44%), Gaps = 17/318 (5%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   A+A    +K ++   N  T   ++S    S S +    + + I  H L ++ R+  
Sbjct: 244 RFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVN 303

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI   S    +D A  +F+    K++  +NV+I G +  + ++  ++ F  M + +V P
Sbjct: 304 ALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEP 363

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKV 186
           N +T+  +  + A L  L LG+ +H  I K  +   +  +   L DMY + G    A +V
Sbjct: 364 NDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMR 242
           F       K +S+  WN +I+G +  G+   A+ELF  M  +       ++V ++     
Sbjct: 424 F----AGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSH 479

Query: 243 KGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G ++   + F  M E   +S     +  MI+   + G  ++A A+   M +  ++ +  
Sbjct: 480 AGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL---MKNMEMKPDGA 536

Query: 298 TVVSALSACAKVGALEAG 315
              S L AC   G +E G
Sbjct: 537 IWGSLLGACRVHGNVELG 554


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  346 bits (888), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 219/669 (32%), Positives = 343/669 (51%), Gaps = 80/669 (11%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           T A+ P+            +T     +L+    S  +  +IHA  +  ++     +  +L
Sbjct: 3   TAAVLPSPASTRHPAGGGALTADRAAALLAGCASASRAAEIHAAAVRASVDQDKAVAFRL 62

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIF-NVLIRGLAENSHFQSCISHFVFML--RLSVR 126
             + +    +D A+++    TP    +F    I   +     ++ ++    ML  R  + 
Sbjct: 63  QRAYAASGRLDLAVALLRR-TPDPTAVFYTSAIHAHSSRGLHRAALALLSEMLLSRHGLL 121

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P   T   +S S+ +   L++GR LH   VK  +  + +V   L  MY + G+   A  +
Sbjct: 122 PTAHT---LSASLPACGCLAVGRALHGYAVKLALSGEPYVATALLGMYARAGEAAAARAL 178

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           FD                                  GM P  +V S  +++  + + G L
Sbjct: 179 FD----------------------------------GMRPDPHVVSVTAMLSCYAKMGQL 204

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             A  LF+ +P K +V W AM++G++Q+G   +AL +F QML +GV  ++ +VV ALSA 
Sbjct: 205 DDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQMLRSGVEPDEVSVVLALSAV 264

Query: 307 AKVGALEAGVRVHNYISCND----FGLKGAIGTALVDMYAKCGNIEAASLVF---GETKE 359
           A++G  E+G  +H++++         L   +GTALVDMY KCG++E A  VF   G   +
Sbjct: 265 AQLGTAESGRWLHSFVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGD 324

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           +D++ W AMI G A+HGR  +A++ F ++   G  P    F+ +L AC +SG V      
Sbjct: 325 RDVVAWNAMINGYAMHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRAL 384

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-----------------SFTK 462
           F +M  +Y I P V+H+  +V+LL R G+  + +   Q+                    K
Sbjct: 385 FAAMEEEYGIVPKVEHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHK 444

Query: 463 LLQLKPK-----------HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
            L L  +           +  +YVLLSN+YAA G+W++V RVR++M+   ++K+PG S +
Sbjct: 445 NLALGQRVADYLVGNGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAV 504

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGC 568
           EV   V  F AG   H  + EI++KLE++ + AR +G++P TE VLH++ +  KE AL  
Sbjct: 505 EVGRRVVEFVAGDRSHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAV 564

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLALAFGLI T P T IKIVK L  C DCH+++K  S+ + R+IV RD  RFH+F D
Sbjct: 565 HSEKLALAFGLISTPPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVD 624

Query: 628 GTCSCRDYW 636
           G+CSC DYW
Sbjct: 625 GSCSCGDYW 633


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 226/735 (30%), Positives = 359/735 (48%), Gaps = 133/735 (18%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++ L   +++  + + +H+ II    +  + +   LISS +   SI YA  +FD     N
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 94  LHIFNV-------------------------------LIRGLAENSHFQSCISHFVFMLR 122
           L+ +N                                LI G A        +  +  ML+
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 123 L--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
              S   NR+T+  +    +    + LGR +H  +VK G     FV   L DMY ++G  
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 181 RGAFKVFDETPEKN---------------------------KSESVLLWNVLINGCSKIG 213
             A KVFDE PEKN                           +    + W  +I G ++ G
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 214 YLRKAVELF-----------------------GMMP----------------KKNVASWV 234
             R A+++F                       G+M                 K N+    
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVAS 314

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + +  ++K A  +F++M  K VVSWTAM+ G+ QNG +E+A+  F  M   G+  
Sbjct: 315 ALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEP 374

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +DFT+ S +S+CA + +LE G + H     +       +  ALV +Y KCG+IE +  +F
Sbjct: 375 DDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLF 434

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            E   KD +TWTA++ G A  G+  + I  F+ M+  G +PD   F+ +L+AC  +G V+
Sbjct: 435 NEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVE 494

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQNSFTK---------- 462
                F+SM  ++ I P   H+T +++L SR G  ++++ + N    F+           
Sbjct: 495 KGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKM-PFSPDAISWATLLS 553

Query: 463 -----------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                            L++L P + +SYVLLS++YAA+G+W++VAR+R  M+ + ++K+
Sbjct: 554 SCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKE 613

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EK 562
           PG S+I+    VH F A    +  + +I+S+LE +     ++GY+P    VLH++ + EK
Sbjct: 614 PGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEK 673

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
            + L  HSEKLA+AFGL+   PG  I++VK L +C DCH+  KY SKI+ REI++RDT R
Sbjct: 674 IKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTAR 733

Query: 622 FHYFKDGTCSCRDYW 636
           FH FKDGTCSC D+W
Sbjct: 734 FHLFKDGTCSCGDFW 748



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 50/243 (20%), Positives = 104/243 (42%), Gaps = 15/243 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           ++ T   +IS   +  S ++  Q HA+ +   L +   ++  L++      SI+ +  +F
Sbjct: 375 DDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLF 434

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +  + K+   +  L+ G A+       I  F  ML   ++P+++T+  V  + +   L+ 
Sbjct: 435 NEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVE 494

Query: 147 LGRGLHCLIVKSGVEYDAFVRVH-----LADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            G      I +S +     V +      + D++ + G+   A    ++ P    S   + 
Sbjct: 495 KGNQ----IFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMP---FSPDAIS 547

Query: 202 WNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           W  L++ C   G +   + A E    +   N AS+V L   +  KG  ++   L + M +
Sbjct: 548 WATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRD 607

Query: 259 KGV 261
           KG+
Sbjct: 608 KGL 610


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 219/657 (33%), Positives = 341/657 (51%), Gaps = 79/657 (12%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKS 78
           S+ K   N  +  + SL  S  S  Q++Q HA +I   L        +L+    AS   S
Sbjct: 6   STFKKPLNSNQLQLFSL-ESCKSMNQIKQTHAHLITTGLILHPITANKLLKVLIASSFGS 64

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRG---LAENSHFQSCISHFVFMLRLS-VRPNRLTYPF 134
           + YA  +FD     ++ I+N +I+    +  +SH  + +  F+ M+R+S   PNR T+ F
Sbjct: 65  LSYAHQLFDQIPKPDVFIYNTMIKAHAVIPTSSH--NSMRIFLSMVRVSGFLPNRYTFVF 122

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           V K+  +   +  G  +    +K G+E + FV   +  MY   G    A +VFD      
Sbjct: 123 VFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFD------ 176

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
                  W++                       +++ SW  +I G++  G++ +A E+F+
Sbjct: 177 -------WSL----------------------DQDLYSWNIMIGGYVGSGEIGRAKEMFD 207

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           +M E+ VVSWT +I G+ Q G  ++AL +F +ML  G   N+FT+ SAL+ACA + AL+ 
Sbjct: 208 EMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALAACANLVALDQ 267

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL--LTWTAMIWGL 372
           G  +H YI  ++  +   +  +L+DMYAKCG I+ A+ VF +     L    W AMI G 
Sbjct: 268 GRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGY 327

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A+HG+ ++AI  F++M      P+   F+A+L AC +   V+    +F SM   Y IEP 
Sbjct: 328 AMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPE 387

Query: 433 VKHHTVVVNLLSRVG----------------------------QDSQGYQNSQNSFTKLL 464
           ++H+  +V+LL R G                            +  +  +  Q     + 
Sbjct: 388 IEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIK 447

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
           +L   H   +VLL+N+Y+A G+W +   VR  ++    KK PG S IE+NG  H+F  G 
Sbjct: 448 ELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGD 507

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLI 580
             H   K+++  L+++    +  GY+P    VL +I  +E+KE AL  HSEKLA+AFGLI
Sbjct: 508 RSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLI 567

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            T PGT I+IVK L +C DCH   K+ SK+ +REI++RD  R+H+FKDG CSC+DYW
Sbjct: 568 NTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  346 bits (887), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/507 (36%), Positives = 293/507 (57%), Gaps = 50/507 (9%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           YVQ G    A  +F   PE+N    V+ W V++ G  + G + +A +LF MMP K+V + 
Sbjct: 66  YVQEGLIEEAELLFWRMPERN----VVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVAS 121

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-------------FSQNGEAEKA 280
            ++IDG   +G L +A E+F++MP++ VV+WT+MI+G             + + G   +A
Sbjct: 122 TNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEA 181

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           LA+F  M   GVR +  +V+S LS C  + +L+ G +VH+ +  + F +   + + L+ M
Sbjct: 182 LALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITM 241

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y KCG++  A  VF     KD++ W ++I G A HG  E+A++ F  M  S   PD   F
Sbjct: 242 YIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITF 301

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-- 458
           + +L+AC Y+G+VK  L  F+SM+  Y ++P  +H+  +V+LL R G+ ++     +N  
Sbjct: 302 IGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMP 361

Query: 459 --------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                     +  KLLQL+P +   Y+LLSN+Y+++ RWKDV  
Sbjct: 362 VEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVE 421

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMP 549
           +R  M+ ++++K PG S+IEV+  VH F  GG   H   + I  KL  + A  RE GY P
Sbjct: 422 LRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCP 481

Query: 550 GTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
              +V+H++ +EEK  +L  HSEKLA+A+GL++   G  I+++K L +CGD HS +K  +
Sbjct: 482 DGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIA 541

Query: 609 KISQREIVLRDT-RFHYFKDGTCSCRD 634
           +++ REI+LRDT RFH+FKDG CSC D
Sbjct: 542 QVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 56/247 (22%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y Q  + R A K+FD+ PE N     + WN L++G  + G + +A ++F  MP++NV SW
Sbjct: 4   YFQNKRPREARKLFDKMPETN----TISWNGLVSGYVQNGMISEARKVFDKMPERNVVSW 59

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            ++I G++++G +++A  LF +MPE+ VVSWT M+ G  ++G  ++A  +F  M    V 
Sbjct: 60  TAMIRGYVQEGLIEEAELLFWRMPERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVV 119

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           A+                                       T ++D     G +  A  +
Sbjct: 120 AS---------------------------------------TNMIDGLCSEGRLIEAREI 140

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYE-------------QAIQYFKKMMYSGTEPDGTVF 400
           F E  +++++ WT+MI G    G +              +A+  F  M   G  P     
Sbjct: 141 FDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSV 200

Query: 401 LAILTAC 407
           +++L+ C
Sbjct: 201 ISVLSVC 207



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 136/305 (44%), Gaps = 34/305 (11%)

Query: 25  PSNNITE-THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           P  N+   T ++  +       + RQ+   + + ++ AS+ +   L S   L +    A 
Sbjct: 83  PERNVVSWTVMLGGLIEDGRVDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIE----AR 138

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCI-------------SHFVFMLRLSVRPNRL 130
            IFD    +N+  +  +I G  ++  + + I             + F  M R  VRP+  
Sbjct: 139 EIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFP 198

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           +   V     SL+ L  GR +H  +V+S  + D +V   L  MY++ G    A +VFD  
Sbjct: 199 SVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFD-- 256

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDL 246
             +  S+ +++WN +I G ++ G+  KA+E+F  M   ++A    +++ ++      G +
Sbjct: 257 --RFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKV 314

Query: 247 KKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           K+  E+FE M  K  V      +  M++   + G+  +A+ +   M    V A+     +
Sbjct: 315 KEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENM---PVEADAIVWGA 371

Query: 302 ALSAC 306
            L AC
Sbjct: 372 LLGAC 376



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 68/150 (45%), Gaps = 39/150 (26%)

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G+ +    ++A +LF++MPE   +SW  +++G+ QNG   +A  +F +M +         
Sbjct: 3   GYFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPE--------- 53

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
                                N +S           TA++  Y + G IE A L+F    
Sbjct: 54  --------------------RNVVSW----------TAMIRGYVQEGLIEEAELLFWRMP 83

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           E+++++WT M+ GL   GR ++A Q F  M
Sbjct: 84  ERNVVSWTVMLGGLIEDGRVDEARQLFDMM 113


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 307/582 (52%), Gaps = 76/582 (13%)

Query: 127 PNRLTYPFVSKSVASLS-LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           P+ LT+P   KS + L   L  G  LH   +K     +  V   L  +Y + G    A +
Sbjct: 68  PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 127

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV----- 234
           VFDE P      S + W  LI      G LR+AV +       GM P    A  V     
Sbjct: 128 VFDEMPHP----STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA 183

Query: 235 ----------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                       + +D +++ G++ KA E+F++M +K  V+W A
Sbjct: 184 RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGA 243

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+ G++ NG   +AL +F  M   GVR + + V  ALSAC ++GAL+ G +    +  ++
Sbjct: 244 MVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDE 303

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F     +GTAL+DMYAKCG+   A +VF + ++KD++ W AMI GL + G  + A     
Sbjct: 304 FLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIG 363

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M  SG + +   F+ +L +C ++G ++    +F +M   Y I P ++H+  +V+LLSR 
Sbjct: 364 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRA 423

Query: 447 GQDSQGYQ----------------------------NSQNSFTKLLQLKPKHPSSYVLLS 478
           G   + +Q                             +++  T+L++L+P +  +YV+LS
Sbjct: 424 GLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLS 483

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIY+  GRW+D A++R  M+ + ++K P  S++E  G VH F  G   H L+ +I+ KL+
Sbjct: 484 NIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 543

Query: 537 DIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
           ++    +  GY P TE V+ +++ EEKE  L  HSEKLA+AF L+ T PG TI++ K L 
Sbjct: 544 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLR 603

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +C DCH+ +K  S+I+ REI++RD  RFH F+DG+CSC DYW
Sbjct: 604 VCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 159/402 (39%), Gaps = 48/402 (11%)

Query: 32  THIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           T  I+L  +S     LR   Q+HA+ +      +  + T L++  +    +  A  +FD 
Sbjct: 72  TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
               +   +  LI    +    +  +          +RP+  T   V  + A ++ L+ G
Sbjct: 132 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 191

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
             +     + G+    FV     D+YV+ G+   A +VFD    K + +  + W  ++ G
Sbjct: 192 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFD----KMRDKDAVAWGAMVGG 247

Query: 209 CSKIGYLRKAVELFGMMPKKNV-----------------------------ASW------ 233
            +  G+ R+A++LF  M  + V                               W      
Sbjct: 248 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 307

Query: 234 ----VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +LID + + G   +A  +F+QM +K ++ W AMI G    G  + A  +  QM  
Sbjct: 308 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 367

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVR-VHNYISCNDFGLKGAIGTALVDMYAKCGNI- 347
           +GV+ ND T +  L +C   G ++ G R  HN         +      +VD+ ++ G + 
Sbjct: 368 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 427

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
           EA  L+       + +   A++ G  IH   E A     +++
Sbjct: 428 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLI 469


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 334/644 (51%), Gaps = 80/644 (12%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H + L     S     ++H+QII      SS ++  L+        I  AL +FD   P 
Sbjct: 8   HQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEM-PN 66

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVF-MLRL-----SVRPNRLTYPFVSKSVASLSLLS 146
             H+    I      +H ++ I      ML        ++P+   +  + ++ +SL  L 
Sbjct: 67  RDHVSWASIL----TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLR 122

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           LG+ +H   + S    D  V+  L DMY + G+   A  VFD         S+L      
Sbjct: 123 LGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFD---------SILF----- 168

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                KN  SW S+I G+ R G   +A +LF Q P + + SWTA
Sbjct: 169 ---------------------KNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTA 207

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCN 325
           +I+G  Q+G    + ++F +M   G+   D  V+S++   CA +  LE G ++H  +   
Sbjct: 208 LISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIAL 267

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     I  ALVDMYAKC +I AA  +F     KD+++WT++I G A HG+ E+A+  +
Sbjct: 268 GFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLY 327

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M+ S  +P+   F+ +L AC ++G V      F SM  DY I PS++H+T +++LLSR
Sbjct: 328 DEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSR 387

Query: 446 VGQ--------DSQGYQNSQNSFTKL--------------------LQLKPKHPSSYVLL 477
            G         D   ++  + ++  L                    L LKP+ PS+Y+LL
Sbjct: 388 SGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILL 447

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIHSK 534
           SN+YA    W  V++VR LM    ++K+PG+S I+       F AG    H +  EI + 
Sbjct: 448 SNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNL 507

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           L+D+ A  R++GY+P T +VL++I ++EKE+ L  HSE+LA+A+GL++  PGT I+IVK 
Sbjct: 508 LKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKN 567

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L ICGDCH+++K+ S I +REI++RD TR+H+FK+G CSC D+W
Sbjct: 568 LRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/599 (32%), Positives = 309/599 (51%), Gaps = 79/599 (13%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T L+S       ID A  +FD    ++L  +  ++ G  +  ++   +  F  M   +V 
Sbjct: 306 TTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVI 365

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+ +    V  +   L    LGR +H  IV  G+  D F+   L D+Y + GK       
Sbjct: 366 PDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGK------- 418

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
                                       L +A+  F  +P K+ ASW S++DGF R G +
Sbjct: 419 ----------------------------LDEALRTFEQLPCKSAASWNSMLDGFCRSGGV 450

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            KA + F ++PEK +VSW  M+N + ++    ++  +F +M  + V+ +  T++S LS+C
Sbjct: 451 DKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSC 510

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           AKVGAL  G+ V+ YI  N+ G+   +GTAL+DMY KCG +E A  +F +  EK++  WT
Sbjct: 511 AKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWT 570

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AM+   A+ G+  +AI  + +M   G +PD   F+A+L AC + G V     +F+ +R  
Sbjct: 571 AMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSF 630

Query: 427 YFIEPSVKHHTVVVNLLSRVG----------------------------QDSQGYQNSQN 458
           Y I P++ H+  +V+LL RVG                            +     + ++ 
Sbjct: 631 YNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQ 690

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +F +L+++ P +  ++VLLSNIYA  GRW DV++VRT +    + K PG++ IE NG VH
Sbjct: 691 AFKQLIEIDPTNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVH 750

Query: 519 RFEAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
            F A  + ++ +I   L+DI     E+  +         +K+E  +    HSE+LA+AFG
Sbjct: 751 EFVA-SNLVSADILCMLQDI-----ERRLL---------VKQELSDTTSQHSERLAVAFG 795

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           LI     + I++V  + +C DCHS+MK  S+   REIV+RD  RFH F DG CSC+DYW
Sbjct: 796 LINNQENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 140/607 (23%), Positives = 257/607 (42%), Gaps = 124/607 (20%)

Query: 6   FNRLTTAI--APTTNIKSSHKPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFAS 62
           F+ L+ +I   PT N K+SH    ++   H II L+ S ++ ++   IHA +I  NL   
Sbjct: 11  FSSLSPSIHKPPTLNPKTSH----SVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHD 66

Query: 63  SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
             IT+Q+++      ++D A  I  +       I+N L+    +    Q  +  +  M+ 
Sbjct: 67  PEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLECYYHMVT 126

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT-- 180
             V  +  T+ F+  +      + LG  +H  I+K G   +  +  +L  +Y + GK   
Sbjct: 127 QGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKE 186

Query: 181 -----------------------------RGAFKVFDET------PEKNKSESVL----- 200
                                        R A  +FDE       P++    S++     
Sbjct: 187 VCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAK 246

Query: 201 ------------------LW------NVLINGCSKIGYLRKAVELFGMMPKK--NVASWV 234
                             LW      N L++  SK G + +A  L     +   +V  W 
Sbjct: 247 LKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWT 306

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+ G+++   + KA +LF++M E+ +VSWT M++G+ Q G   ++L +F QM    V  
Sbjct: 307 TLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIP 366

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA---- 350
           ++  +V+ LSAC  +   + G  VH +I      + G +G AL+D+YAKCG ++ A    
Sbjct: 367 DEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTF 426

Query: 351 ------------SLV---------------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
                       S++               F +  EKD+++W  M+     H  + ++ +
Sbjct: 427 EQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFE 486

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTV 438
            F KM  S  +PD T  +++L++C   G    ALN    +  + +IE +         T 
Sbjct: 487 IFCKMQSSNVKPDKTTLISLLSSCAKVG----ALNH--GIWVNVYIEKNEIGIDAMLGTA 540

Query: 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
           ++++  + G     Y+     FT++++   K+   +  +   YA EG+  +   +   M+
Sbjct: 541 LIDMYGKCGCVEMAYE----IFTQIIE---KNVFVWTAMMAAYAMEGQALEAIDLYLEME 593

Query: 499 RRSIKKD 505
            R +K D
Sbjct: 594 ERGVKPD 600


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 215/644 (33%), Positives = 334/644 (51%), Gaps = 80/644 (12%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H + L     S     ++H+QII      SS ++  L+        I  AL +FD   P 
Sbjct: 8   HQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEM-PN 66

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVF-MLRL-----SVRPNRLTYPFVSKSVASLSLLS 146
             H+    I      +H ++ I      ML        ++P+   +  + ++ +SL  L 
Sbjct: 67  RDHVSWASIL----TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLR 122

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           LG+ +H   + S    D  V+  L DMY + G+   A  VFD         S+L      
Sbjct: 123 LGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFD---------SILF----- 168

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                KN  SW S+I G+ R G   +A +LF Q P + + SWTA
Sbjct: 169 ---------------------KNSVSWTSMISGYARSGRKCEAMDLFLQAPVRNLFSWTA 207

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCN 325
           +I+G  Q+G    + ++F +M   G+   D  V+S++   CA +  LE G ++H  +   
Sbjct: 208 LISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGKQIHGLVIAL 267

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     I  ALVDMYAKC +I AA  +F     KD+++WT++I G A HG+ E+A+  +
Sbjct: 268 GFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHGKAEEALTLY 327

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M+ S  +P+   F+ +L AC ++G V      F SM  DY I PS++H+T +++LLSR
Sbjct: 328 DEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHYTCLLDLLSR 387

Query: 446 VGQ--------DSQGYQNSQNSFTKL--------------------LQLKPKHPSSYVLL 477
            G         D   ++  + ++  L                    L LKP+ PS+Y+LL
Sbjct: 388 SGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKPEDPSTYILL 447

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIHSK 534
           SN+YA    W  V++VR LM    ++K+PG+S I+       F AG    H +  EI + 
Sbjct: 448 SNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSSIDFGKDSQVFHAGESCDHPMKNEICNL 507

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           L+D+ A  R++GY+P T +VL++I ++EKE+ L  HSE+LA+A+GL++  PGT I+IVK 
Sbjct: 508 LKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQLFWHSERLAVAYGLLKAVPGTIIRIVKN 567

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L ICGDCH+++K+ S I +REI++RD TR+H+FK+G CSC D+W
Sbjct: 568 LRICGDCHNVLKFISDIVKREIMVRDATRYHHFKEGKCSCNDFW 611


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  346 bits (887), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 196/582 (33%), Positives = 307/582 (52%), Gaps = 76/582 (13%)

Query: 127 PNRLTYPFVSKSVASLS-LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           P+ LT+P   KS + L   L  G  LH   +K     +  V   L  +Y + G    A +
Sbjct: 115 PSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQR 174

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV----- 234
           VFDE P      S + W  LI      G LR+AV +       GM P    A  V     
Sbjct: 175 VFDEMPHP----STVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACA 230

Query: 235 ----------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                       + +D +++ G++ KA E+F++M +K  V+W A
Sbjct: 231 RVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGA 290

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+ G++ NG   +AL +F  M   GVR + + V  ALSAC ++GAL+ G +    +  ++
Sbjct: 291 MVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDE 350

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F     +GTAL+DMYAKCG+   A +VF + ++KD++ W AMI GL + G  + A     
Sbjct: 351 FLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIG 410

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M  SG + +   F+ +L +C ++G ++    +F +M   Y I P ++H+  +V+LLSR 
Sbjct: 411 QMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRA 470

Query: 447 GQDSQGYQ----------------------------NSQNSFTKLLQLKPKHPSSYVLLS 478
           G   + +Q                             +++  T+L++L+P +  +YV+LS
Sbjct: 471 GLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLS 530

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIY+  GRW+D A++R  M+ + ++K P  S++E  G VH F  G   H L+ +I+ KL+
Sbjct: 531 NIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLD 590

Query: 537 DIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
           ++    +  GY P TE V+ +++ EEKE  L  HSEKLA+AF L+ T PG TI++ K L 
Sbjct: 591 ELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLR 650

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +C DCH+ +K  S+I+ REI++RD  RFH F+DG+CSC DYW
Sbjct: 651 VCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/402 (21%), Positives = 159/402 (39%), Gaps = 48/402 (11%)

Query: 32  THIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           T  I+L  +S     LR   Q+HA+ +      +  + T L++  +    +  A  +FD 
Sbjct: 119 TFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
               +   +  LI    +    +  +          +RP+  T   V  + A ++ L+ G
Sbjct: 179 MPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATG 238

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
             +     + G+    FV     D+YV+ G+   A +VFD    K + +  + W  ++ G
Sbjct: 239 ETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFD----KMRDKDAVAWGAMVGG 294

Query: 209 CSKIGYLRKAVELFGMMPKKNV-----------------------------ASW------ 233
            +  G+ R+A++LF  M  + V                               W      
Sbjct: 295 YASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDN 354

Query: 234 ----VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +LID + + G   +A  +F+QM +K ++ W AMI G    G  + A  +  QM  
Sbjct: 355 PVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEK 414

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVR-VHNYISCNDFGLKGAIGTALVDMYAKCGNI- 347
           +GV+ ND T +  L +C   G ++ G R  HN         +      +VD+ ++ G + 
Sbjct: 415 SGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQ 474

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
           EA  L+       + +   A++ G  IH   E A     +++
Sbjct: 475 EAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLI 516


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 195/536 (36%), Positives = 298/536 (55%), Gaps = 38/536 (7%)

Query: 135 VSKSVASLSLLSLGRG-LHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           +S SV ++  L LG   LH   +KSG    D FVR  L + Y + G+   A   FDE P 
Sbjct: 44  LSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAGRADLARAAFDEAPR 103

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           ++    V L NV++      G + +A  +F  M ++++ SW ++I G+   G++  A E+
Sbjct: 104 RD----VFLCNVMLAAYVTRGEVAEARRVFDGMRERDMVSWNTMIHGYAVNGEVDLAREV 159

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F  M ++   SW++M++ +++   ++ AL ++ +M  A V  +  T+VS LSAC+ +GAL
Sbjct: 160 FNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGAL 219

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
             G  VH ++  N   L   +GTAL+DMYAKCG+IE +  VF     KD+LTW++MI GL
Sbjct: 220 AVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGL 279

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A HG    A+  F +M+  G +P+   F+ +L +C + G V     +F SM   + + P 
Sbjct: 280 ANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPK 339

Query: 433 VKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQNSFTKLL 464
           V+H+  +V+LL R G   +                          Y+N   ++ +  KL 
Sbjct: 340 VQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLR 399

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
            L P     YVLLSNIYA    W+ VA +R  ++R  I++ PG S IE    +H F +G 
Sbjct: 400 VLDPHADGHYVLLSNIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGD 459

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQ 581
             H  +KEI+  L ++M   R+ GY P T  VL +I E+ KE AL  HSEKLA+AFGL+ 
Sbjct: 460 RSHPRSKEIYKMLGEMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLT 519

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T  G+T++I K L  C DCHS +K  + + +R++++RD  RFH+F +G CSC+DYW
Sbjct: 520 TPAGSTLRITKNLRACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 54/258 (20%), Positives = 104/258 (40%), Gaps = 48/258 (18%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +I   +++  +D A  +F+    ++   ++ ++    +    +  +  +  M    V P+
Sbjct: 143 MIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAACVNPD 202

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
             T   V  + + +  L++G  +H  +  +GVE D  +   L DMY + G    + +VF 
Sbjct: 203 CTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVFH 262

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
             P K+    VL W+ +I G +  G+   A+ LF      G+ P +              
Sbjct: 263 SMPVKD----VLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISCTHLG 318

Query: 229 --------------------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAM 267
                                V  +  ++D   R G +++A +L   MP E   V W A+
Sbjct: 319 LVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVIWRAL 378

Query: 268 ING--FSQNGE-AEKALA 282
           +      +N E AE+A+A
Sbjct: 379 LGACRIYKNVEVAEEAMA 396


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 218/679 (32%), Positives = 339/679 (49%), Gaps = 79/679 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T T ++    +S + KQ + IH+ II      +  I   L+   S       A+ +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                 ++ +++ LI  L +    +  I  F  M      PN+ T   +  +  +   L 
Sbjct: 373 KTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQ 432

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  + K G E D  V   L  MY++ G      K+++   +++    ++ WN  +
Sbjct: 433 YGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRD----LISWNAYL 488

Query: 207 NGCSKIGYLRKAVELF------GMMPKKNVASWVS------------------------- 235
           +G    G   + + +F      G +P  N+ +++S                         
Sbjct: 489 SGLHDCGMYDRPLTIFYHMLEEGFIP--NMYTFISILGSCSCLFDVHYGRQVHAHIIKNQ 546

Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                     LID + +   L+ A   F ++  + + +WT +I  ++Q  + EKAL  F 
Sbjct: 547 LDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFR 606

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QM   GV+ N+FT+   LS C+ + +LE G ++H+ +  +       +G+ALVDMYAKCG
Sbjct: 607 QMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGSALVDMYAKCG 666

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +E A  +F     +D + W  +I G A +G+  +A+  F+ M+  G  PDG  F  IL+
Sbjct: 667 CMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILS 726

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS------QGYQNSQNS 459
           AC + G V+     F+SM  D+ I P+V H   +V++L RVG+        Q  Q SQN+
Sbjct: 727 ACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQNA 786

Query: 460 F----------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                                   KL +L+P+  SSY+LLSNI+A EGRW DV RVR+LM
Sbjct: 787 LIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKRVRSLM 846

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
             + +KK+PG S++E NG VH F +    H   +EIH KL+++        Y+P TE+VL
Sbjct: 847 SSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASIQYVPKTEYVL 906

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           HN+ E EK+E L  HSE+LAL F LI T+    I+I K L IC DCH +MK+ S I+ +E
Sbjct: 907 HNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVMKHISSITNQE 966

Query: 615 IVLRDT-RFHYFKDGTCSC 632
           IV+RD  RFH+FK+G CSC
Sbjct: 967 IVVRDVRRFHHFKNGACSC 985



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 180/399 (45%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HAQ     L     + + L+   +    I+ A  +F     +N   +NVL+ G A+ 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M+ L V+ N  T   V K  A+   L  G+ +H LI+K G E + F+ 
Sbjct: 293 GDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIG 352

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
             L DMY + G    A  VF       K   +++W+ LI    + G   ++++LF +M  
Sbjct: 353 CGLVDMYSKCGLAIDAIGVFKTI----KKPDIVVWSALITCLDQQGQSEESIKLFHLMRL 408

Query: 226 ----PKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
               P +                                 +VA   +L+  +M+ G +  
Sbjct: 409 GDTLPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHD 468

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
             +L+E M ++ ++SW A ++G    G  ++ L +F+ ML+ G   N +T +S L +C+ 
Sbjct: 469 GTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSC 528

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +  +  G +VH +I  N       + TAL+DMYAKC  +E A + F     +DL TWT +
Sbjct: 529 LFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVI 588

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I   A   + E+A+ YF++M   G +P+       L+ C
Sbjct: 589 ITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGC 627



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 170/399 (42%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH  I+   +   S +   L++  +  +   YA  +      +++  +  LI+GL   
Sbjct: 132 KAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAE 191

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M    + PN  T     K+ +    L LG+ +H    K G+  D FV 
Sbjct: 192 GFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVG 251

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L D+Y + G+   A K+F   PE+N     + WNVL+NG ++ G +   ++LF  M +
Sbjct: 252 SALVDLYAKCGEIELASKMFIGMPEQND----VTWNVLLNGYAQRGDVTGVLKLFCSMME 307

Query: 228 KNVAS---------------------------------------WVSLIDGFMRKGDLKK 248
            +V                                            L+D + + G    
Sbjct: 308 LDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID 367

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +F+ + +  +V W+A+I    Q G++E+++ +F  M       N +T+ S LSA   
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            G L+ G  +H  +    F    A+  ALV MY K G +   + ++    ++DL++W A 
Sbjct: 428 TGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAY 487

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + GL   G Y++ +  F  M+  G  P+   F++IL +C
Sbjct: 488 LSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 152/322 (47%), Gaps = 43/322 (13%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  + +  AS   L + + +H LIVK  +  D+ + V L ++Y +   +  A  V  + P
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----------------- 228
           +++    V+ W  LI G    G+   ++ LF      G+MP +                 
Sbjct: 175 DRD----VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALD 230

Query: 229 ----------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                           ++    +L+D + + G+++ A ++F  MPE+  V+W  ++NG++
Sbjct: 231 LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYA 290

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q G+    L +F  M++  V+ N+FT+ + L  CA    L+ G  +H+ I    +     
Sbjct: 291 QRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEF 350

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           IG  LVDMY+KCG    A  VF   K+ D++ W+A+I  L   G+ E++I+ F  M    
Sbjct: 351 IGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGD 410

Query: 393 TEPDGTVFLAILTACWYSGQVK 414
           T P+     ++L+A   +G ++
Sbjct: 411 TLPNQYTICSLLSAATNTGNLQ 432


>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 611

 Score =  345 bits (885), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 216/649 (33%), Positives = 337/649 (51%), Gaps = 81/649 (12%)

Query: 27  NNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYA 82
           N   E  ++SL+ + N+T K  +QIH  + +  L        +L+ + ++  S   ++Y+
Sbjct: 5   NKSCEEILLSLLSNCNTTLKTTKQIHTHLYVTGLHTHPFFFGKLLLNCAVSISDHVLNYS 64

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVAS 141
           L +F HF   +  ++N LIR L+ +S   S +  F+ +LR  ++ P+  ++ F  K +A+
Sbjct: 65  LRLFHHFPNPDTFMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIAN 124

Query: 142 LSLLSL-GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
                  G  LH    + G +   FV   L  MY + G    A KVFDE  + N    V+
Sbjct: 125 DGCSKRQGIQLHSHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPN----VV 180

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
            WN ++  C + G  R     FG         W  ++               F +M  + 
Sbjct: 181 AWNAVVTACFRCGMWRVLGVSFG---------WREVV---------------FCEMKMRD 216

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
             SW+ MI GF+++G    A   F ++L    R ++ ++   LSACA+ GA E G  +H 
Sbjct: 217 DASWSTMIVGFAKSGSFHDAFGFFKELLRDRNRPSEVSLTGVLSACAQAGAFEFGKILHG 276

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           ++    F    ++  AL+D Y+KCGN++ A LVF  +              LA+HGR ++
Sbjct: 277 FMEKAGFLCIVSVNNALIDTYSKCGNVDMAKLVFNIS--------------LAMHGRADE 322

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI+ F +M  SG  PDG  F+++L AC +SG V+     F  MR  Y IEP+++H+  +V
Sbjct: 323 AIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQGCALFSKMRNFYGIEPAIEHYGCMV 382

Query: 441 NLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPS 472
           +L  R  +  + Y+                             ++    +L ++ P +  
Sbjct: 383 DLYGRAARLQKAYEFIRQMPILPNVIIWRTLLGACSIHGNIELAELVKARLAEMDPNNSG 442

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            +VLLSN+YA  G+WKDVA +R  M  +S+KK PGWS IE++   + F AG   +++ KE
Sbjct: 443 DHVLLSNVYAVAGKWKDVAGIRRTMIEQSMKKIPGWSMIEIDKVNYGFVAGEKPNEVTKE 502

Query: 531 IHSKLEDIMAGAREQ-GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTI 588
            H KL +IM   RE+ GY P    VLH+++EE KE+++  HSEKLA AFG+ +   G  +
Sbjct: 503 AHDKLREIMLRLREEEGYAPQVRSVLHDVEEEEKEDSMSKHSEKLAAAFGIAKLPKGRIL 562

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +IVK L +CGDCH++MK  SK+ Q EI++RD +RFH FK G CSCRDYW
Sbjct: 563 RIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKGGFCSCRDYW 611


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  345 bits (885), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 299/573 (52%), Gaps = 80/573 (13%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +++S + +S    +H  ++KS    D F+   L  MY +LG    A ++FDE P K+   
Sbjct: 71  AISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKD--- 127

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF----------------------------------- 222
            ++ WN L++G S  GYL   +  F                                   
Sbjct: 128 -LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 186

Query: 223 -------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                  GM  K  V +  SLI+ + + G L  A +LFE+MP + +VSW +M+   + NG
Sbjct: 187 HGVVVKLGMSGKAKVVN--SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNG 244

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
            AEK + +F  M  AG+  +  T+V+ L AC   G       +H YI    F     I T
Sbjct: 245 YAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 304

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+++YAK G + A+  +F E K++D + WTAM+ G A+H    +AI+ F  M+  G E 
Sbjct: 305 ALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 364

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
           D   F  +L+AC +SG V+    +F+ M   Y +EP + H++ +V+LL R G+    Y+ 
Sbjct: 365 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 424

Query: 456 ----------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                        +    +LL L P    +Y++LSNIY+A G W
Sbjct: 425 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLW 484

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ 545
           +D ++VR LM+ R + ++PG S+IE    +HRF  G   H  + EIH+KLE+++   RE 
Sbjct: 485 RDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREA 544

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           G  P TE+VLH+I EE K + +  HSEKLA+AFGL+ T  G  + I K L ICGDCHS  
Sbjct: 545 GCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTA 604

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+AS + +R I++RD+ RFH+F DG CSCRDYW
Sbjct: 605 KFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 148/351 (42%), Gaps = 19/351 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S +  N +T   ++S      +  + + +H  ++   +   +++   LI+       +D 
Sbjct: 158 SGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 217

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    ++L  +N ++     N + +  +  F  M R  + P++ T   + ++   
Sbjct: 218 ASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTD 277

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
             L      +H  I + G   D  +   L ++Y +LG+   +  +F+E  ++++    + 
Sbjct: 278 TGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR----IA 333

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP 257
           W  ++ G +     R+A++LF +M K+ V     ++  L+      G +++  + FE M 
Sbjct: 334 WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMS 393

Query: 258 EKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           E   V      ++ M++   ++G  E A  +   M    +  +     + L AC   G +
Sbjct: 394 EVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM---PMEPSSGVWGALLGACRVYGNV 450

Query: 313 EAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           E G  V    +S +    +  I   L ++Y+  G    AS V    KE+ L
Sbjct: 451 ELGKEVAEQLLSLDPSDHRNYI--MLSNIYSAAGLWRDASKVRALMKERRL 499



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 298 TVVSALSACAKVGALEA-GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           ++V A+S+C  V    A   RV   ++ +D    G IG  LV MY K G  E A  +F E
Sbjct: 67  SLVFAISSCTSVSYCSAIHARVIKSLNYSD----GFIGDRLVSMYFKLGYDEDAQRLFDE 122

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTAC 407
              KDL++W +++ GL+  G     +  F +M   SG +P+    L++++AC
Sbjct: 123 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 174


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 204/653 (31%), Positives = 328/653 (50%), Gaps = 99/653 (15%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A S+   F  ++L  +N +I   ++N  F   +     M+   V+P+ +T+  V  +
Sbjct: 166 LDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPA 225

Query: 139 VASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
            + L LL  G+ +H   +++  V  ++FV   L DMY   G+      VFD   ++    
Sbjct: 226 CSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRK--- 282

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF---------------------------GMMPKKNV 230
            + LWN +I G ++  +  KA+ LF                           G+  K+ +
Sbjct: 283 -IGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGI 341

Query: 231 ASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
             +V             +LID + R GD+K +  +F+ M ++ +VSW  +I  +   G +
Sbjct: 342 HGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRS 401

Query: 278 EKALAMFFQML----------------DAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
             AL +  +M                     + N  T+++ L  CA + AL  G  +H Y
Sbjct: 402 SDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAY 461

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
              N    +  +G+ALVDMYAKCG +  A  VF +   ++++TW  +I    +HG+ +++
Sbjct: 462 AIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKES 521

Query: 382 IQYFKKMMYSG-----TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           ++ F+ M+  G      +P    F+A+  +C +SG V   L+ F  M+ ++ IEP+  H+
Sbjct: 522 LELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHY 581

Query: 437 TVVVNLLSRVGQDSQGY---QNSQNSFTK--------------------------LLQLK 467
             +V+L+ R G+  + Y       + F K                          LLQL+
Sbjct: 582 ACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQ 641

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           P   S YVLLSNIY++ G W     +R  M+   +KK+PG S+IE    VH+F AG   H
Sbjct: 642 PDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLSH 701

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTP 584
             ++++H  LE +    +++GY+P T  VLH+I EE++E + C HSEKLA+AFG++ T P
Sbjct: 702 PQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTPP 761

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           GTTI++ K L +C DCH+  K+ SKI  REI+LRD  RFH+FKDGTCSC DYW
Sbjct: 762 GTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/424 (21%), Positives = 172/424 (40%), Gaps = 71/424 (16%)

Query: 48  RQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           +QIHA +    +  F+S  I   L++       +  A  +FD  T ++   +N +I  L 
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALC 89

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-----LSLGRGLHCLIVKSGV 160
               ++  I  F  ML     P+  T   VS ++A  +L     L LG+ +H    + G 
Sbjct: 90  RFEEWEVAIKAFRLMLMEGFEPSSFT--LVSMALACSNLRKRDGLWLGKQIHGCCFRKG- 146

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN------------- 207
            +  F    L  MY +LG+   A  +     +++    ++ WN +I+             
Sbjct: 147 HWRTFSNNALMAMYAKLGRLDDAKSLLVLFEDRD----LVTWNSMISSFSQNERFMEALM 202

Query: 208 ----------------------GCSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGF 240
                                  CS +  LR   E+     +     +N     +L+D +
Sbjct: 203 FLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMY 262

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTV 299
              G ++    +F+ + ++ +  W AMI G++Q+   EKAL +F +M   AG+ +N  T+
Sbjct: 263 CNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTM 322

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            S + A  +   +     +H Y+          +  AL+DMY++ G+I+ +  +F   ++
Sbjct: 323 SSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMED 382

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-------YSGT---------EPDGTVFLAI 403
           +D+++W  +I    I GR   A+    +M        Y G          +P+    + +
Sbjct: 383 RDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTV 442

Query: 404 LTAC 407
           L  C
Sbjct: 443 LPGC 446



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 114/223 (51%), Gaps = 8/223 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L++ + + G L  A ++F+++ E+  VSW ++I+   +  E E A+  F  ML  G   
Sbjct: 52  TLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEP 111

Query: 295 NDFTVVSALSACA---KVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAA 350
           + FT+VS   AC+   K   L  G ++H    C   G  +     AL+ MYAK G ++ A
Sbjct: 112 SSFTLVSMALACSNLRKRDGLWLGKQIHG--CCFRKGHWRTFSNNALMAMYAKLGRLDDA 169

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +    +++DL+TW +MI   + + R+ +A+ + + M+  G +PDG  F ++L AC + 
Sbjct: 170 KSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHL 229

Query: 411 GQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
             ++        ++R D  IE S    + +V++    GQ   G
Sbjct: 230 DLLRTGKEIHAYALRTDDVIENSFV-GSALVDMYCNCGQVESG 271



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 2/123 (1%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKC 344
           M+ +G   ++F   + L A A +  L  G ++H ++    +G   +  I   LV+MY KC
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +  A  VF    E+D ++W ++I  L     +E AI+ F+ M+  G EP     +++ 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 405 TAC 407
            AC
Sbjct: 121 LAC 123



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 108/278 (38%), Gaps = 42/278 (15%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           SN  T + I+          +   IH  +I   L  +  +   LI   S    I  +  I
Sbjct: 317 SNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRI 376

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS----------------VRPNR 129
           FD    +++  +N +I            +     M R+                  +PN 
Sbjct: 377 FDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNS 436

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           +T   V    ASLS L+ G+ +H   +++ +     V   L DMY + G    A +VFD+
Sbjct: 437 ITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQ 496

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
            P +N    V+ WNV+I      G  ++++ELF  M  +                   K 
Sbjct: 497 MPIRN----VITWNVIIMAYGMHGKGKESLELFEDMVAEGA-----------------KG 535

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           GE+    P +  V++ A+    S +G  ++ L++F +M
Sbjct: 536 GEV---KPTE--VTFIALFASCSHSGMVDEGLSLFHKM 568


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 197/567 (34%), Positives = 300/567 (52%), Gaps = 75/567 (13%)

Query: 141  SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            ++S  S  +  H  I   G++YD+ +    A MYV   +   A  VF++ P    +    
Sbjct: 729  TISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIP----NPCSF 784

Query: 201  LWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV-------------------- 234
            LWNV+I G +  G    ++EL+      G+ P K    +                     
Sbjct: 785  LWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHL 844

Query: 235  -------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                         +L+D + + GD++ A  +F++M  + +VSWT+MI+G++ NG   + L
Sbjct: 845  VCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETL 904

Query: 282  AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
              F  M  +GV  N  +++S L AC  +GAL  G   H+Y+    F     + TA++DMY
Sbjct: 905  GFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMY 964

Query: 342  AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            +KCG+++ A  +F ET  KDL+ W+AMI    IHG   +AI  F +M+ +G  P    F 
Sbjct: 965  SKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFT 1024

Query: 402  AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
             +L+AC +SG ++    +F  M  ++ I   + ++  +V+LL R GQ S+     +N   
Sbjct: 1025 CVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPV 1084

Query: 462  K----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
            +                            L  L P H   +VLLSNIYAA+ RW +V +V
Sbjct: 1085 EPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKV 1144

Query: 494  RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
            R +M RR   K  G+S +E +  VH+F  G   H   +++++KLE++ A  +  GY+P T
Sbjct: 1145 RKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLT 1204

Query: 552  EWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
            ++VLH+I+EE KE AL  HSE+LA+AFGLI T+PGTT++I K L ICGDCH+ +K  SKI
Sbjct: 1205 DFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKI 1264

Query: 611  SQREIVLRDT-RFHYFKDGTCSCRDYW 636
              R I++RD  RFH F+DG CSC DYW
Sbjct: 1265 VNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 148/547 (27%), Positives = 273/547 (49%), Gaps = 75/547 (13%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA 140
           AL +F+ F   +  ++  ++ G  +N+  +  ++ F  M+ +  V  + +T   V  + A
Sbjct: 158 ALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACA 217

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            L  +  G  +H L+++   + D  +   L ++Y + G  + A  +F + PEK+    V+
Sbjct: 218 QLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKD----VI 273

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK-----------------------------NVA 231
            W+ +I   +      +A+ LF  M +K                              +A
Sbjct: 274 SWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIA 333

Query: 232 SW----------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
            W           +LID +M+     +A +LF+++P+K VVSW A+++G++QNG A K++
Sbjct: 334 VWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSM 393

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            +F  ML  G++ +   VV  L+A +++G  +  + +H Y+  + F     +G +L+++Y
Sbjct: 394 GVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELY 453

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVF 400
           +KCG++  A  +F     +D++ W++MI    IHGR  +A++ F +M+ + T  P+   F
Sbjct: 454 SKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTF 513

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------- 453
           L+IL+AC ++G V+  L  FD M  DY + P  +H  ++V+LL R+GQ  +         
Sbjct: 514 LSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMP 573

Query: 454 ---------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                +  + +   L  L P H   Y+LLSNIYA +G+W +VA 
Sbjct: 574 IPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAE 633

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPG 550
           +RT ++ R +KK  G S +EV G VH F A    H  +++I+  L  + A   ++ Y+P 
Sbjct: 634 LRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPD 693

Query: 551 TEWVLHN 557
            +++LH+
Sbjct: 694 LDFLLHD 700



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 118/430 (27%), Positives = 199/430 (46%), Gaps = 54/430 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQI----ILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           ++ L  + N+ + + Q+H+Q+    ILH+ F ++++ +     ASL      A  +FD  
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQA----ARKVFDET 62

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
              N+H++N  +R       ++  +  F  M+  +   P+  T P   K+ A L +L LG
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 149 RGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           + +H    K+  +  D FV   L ++Y + G+   A KVF+E    +     +LW  ++ 
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPD----TVLWTSMVT 178

Query: 208 GCSKIGYLRKAVELFGMMPKKN-----------------------VASWV---------- 234
           G  +     +A+ LF  M   +                         S V          
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFD 238

Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                  SL++ + + G  K A  LF +MPEK V+SW+ MI  ++ N  A +AL +F +M
Sbjct: 239 GDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEM 298

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           ++     N  TVVSAL ACA    LE G ++H       F L  ++ TAL+DMY KC   
Sbjct: 299 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCP 358

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + A  +F    +KD+++W A++ G A +G   +++  F+ M+  G +PD    + IL A 
Sbjct: 359 DEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAAS 418

Query: 408 WYSGQVKLAL 417
              G  + AL
Sbjct: 419 SELGIFQQAL 428



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 166/377 (44%), Gaps = 47/377 (12%)

Query: 47   LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            L++ HA+I  + L   SRI T+          ID A  +F+        ++NV+IRG A 
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 107  NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
            +  F S +  +  M+   ++P++  +PF  KS A LS L  G+ +H  +V  G   D FV
Sbjct: 796  DGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 167  RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
               L DMY + G    A  VFD+   ++    ++ W  +I+G +  GY  + +  F +M 
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRD----LVSWTSMISGYAHNGYNSETLGFFDLMR 911

Query: 227  KKNV----------------------ASW-----------------VSLIDGFMRKGDLK 247
               V                        W                  +++D + + G L 
Sbjct: 912  SSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLD 971

Query: 248  KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
             A  LF++   K +V W+AMI  +  +G   KA+ +F QM+ AGVR +  T    LSAC+
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031

Query: 308  KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
              G LE G +++  +   +F +   +     +VD+  + G + EA  L+     E D   
Sbjct: 1032 HSGLLEEG-KMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASI 1090

Query: 365  WTAMIWGLAIHGRYEQA 381
            W +++    IH   + A
Sbjct: 1091 WGSLLGACRIHNNLDLA 1107



 Score = 39.3 bits (90), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 10/195 (5%)

Query: 19   IKSSHKPSNNITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASL 75
            ++SS    N ++   I+S++ +  +   LR+    H+ +I         + T ++   S 
Sbjct: 910  MRSSGVIPNRVS---ILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSK 966

Query: 76   HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
              S+D A  +FD    K+L  ++ +I     + H +  I  F  M++  VRP+ +T+  V
Sbjct: 967  CGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCV 1026

Query: 136  SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR-VHLADMYVQLGKTRGAFKVFDETPEKN 194
              + +   LL  G+    L+ +  V          + D+  + G+   A  + +  P + 
Sbjct: 1027 LSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEP 1086

Query: 195  KSESVLLWNVLINGC 209
             +    +W  L+  C
Sbjct: 1087 DAS---IWGSLLGAC 1098


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  345 bits (884), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 226/637 (35%), Positives = 326/637 (51%), Gaps = 81/637 (12%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           S  QLRQ H+QII   L + + +   LI   + AS   ++ YAL +FD     +  ++N 
Sbjct: 34  SMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNT 93

Query: 100 LIRGLAENSHF--QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           +I+G   +      S +  +  ML+ SV PN  T+P         SLL     + C  ++
Sbjct: 94  IIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFP---------SLL-----IACRKIQ 139

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
            G++    +  HL             FK          + SV L N LI+       L +
Sbjct: 140 HGMQ----IHAHL-------------FKF------GFGAHSVCL-NSLIHMYVTFQALEE 175

Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
           A  +F  +P  +  SW SLI G+ + G + +A  +F+ MP+K   SW AM+  + Q    
Sbjct: 176 ARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQKNSASWNAMMAAYVQTNRF 235

Query: 278 EKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            +A A+F +M        D F   + LSAC  +GAL+ G  +H YI  N   L   + TA
Sbjct: 236 HEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELDSKLTTA 295

Query: 337 LVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           +VDMY KCG +E A  VF       + + +W  MI GLA+HG  E AIQ FK+M      
Sbjct: 296 IVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKEMERQRVA 355

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------- 447
           PD   FL +LTAC +SG V+   N+F  M   Y IEP ++H   +V+LL R G       
Sbjct: 356 PDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAGMVPEARK 415

Query: 448 ---------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                                +  +  +  +    ++++L+P +   YVLL+N+YA  G+
Sbjct: 416 LIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIELEPNNSGRYVLLANLYANAGK 475

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           W+D A+VR LM  R +KK PG+S IE+ G VH F AG   H  AKE+H+K+ +++   + 
Sbjct: 476 WEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGERNHPQAKELHAKVYEMLEHLKS 535

Query: 545 QGYMPGTEWVLH----NIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            GY+  T  VLH    + +E+ E  L  HSEKLA+AFGL +T PG T++I+K L IC DC
Sbjct: 536 VGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGLSRTKPGETLRILKNLRICEDC 595

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H   K  S +  REI++RD TRFH FK G CSC+DYW
Sbjct: 596 HHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 117/272 (43%), Gaps = 30/272 (11%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITE----THIISLIHSSNSTKQLRQIHAQIILHNLFAS 62
           NR   A A    +K+    +NN+ +    T ++S      +  Q + IH  I  + +   
Sbjct: 233 NRFHEAFALFDRMKAE---NNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGIELD 289

Query: 63  SRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVF 119
           S++TT ++        ++ AL +F H  P   + +  +N +I GLA + + ++ I  F  
Sbjct: 290 SKLTTAIVDMYCKCGCLEKALQVF-HSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLFKE 348

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLG 178
           M R  V P+ +T+  +  + A   L+  GR     +++  G+E        + D+  + G
Sbjct: 349 MERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRMEHFGCMVDLLGRAG 408

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSK---------IGYLRKAVELFGMMPKKN 229
               A K+ DE P    S  V +   L+  C K         IG  R+ +EL       N
Sbjct: 409 MVPEARKLIDEMP---VSPDVTVLGTLLGACKKHRNIELGEEIG--RRVIEL----EPNN 459

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
              +V L + +   G  + A ++ + M ++GV
Sbjct: 460 SGRYVLLANLYANAGKWEDAAKVRKLMDDRGV 491


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 209/663 (31%), Positives = 342/663 (51%), Gaps = 76/663 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K L Q++ Q+I+  L     +  + I++      ++YA   F   +  ++ ++N +I+G 
Sbjct: 1   KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 60

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
            + +   + I  ++ M    V PN  T+ +V K+    S+  +G+ +H    K G   + 
Sbjct: 61  TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 120

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV+  L  MY + G+   A  VFD+  ++    +V+ W  +I+G  + G   +A+ +F  
Sbjct: 121 FVQNSLVSMYAKFGQISYARIVFDKLHDR----TVVSWTSIISGYVQNGDPMEALNVFKE 176

Query: 225 MPKKNV-ASWVSLID--------------------------------------GFMRKGD 245
           M + NV   W++L+                                        + ++G 
Sbjct: 177 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 236

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           ++ A   F +M +  ++ W AMI+G++ NG  E+A+ +F +M+   +R +  T+ SA+ A
Sbjct: 237 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 296

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            A+VG+LE    +  YIS +++     + T L+DMYAKCG+I  A  VF    +KD++ W
Sbjct: 297 SAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLW 356

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           + MI G  +HG  ++AI  + +M  +G  P+   F+ +LTAC  SG VK     F  M  
Sbjct: 357 SVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP- 415

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQ 457
           D+ IEP  +H++ VV+LL R G  +Q Y                            +  +
Sbjct: 416 DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGE 475

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  +L  L P +   YV LSN+YA+   W  VA VR +M ++ + KD G S IE+NG++
Sbjct: 476 IAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNL 535

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLA 574
             F+ G   H  +KEI  +L+ +    +  GY+P  E VLH++  EE EE L  HSE+LA
Sbjct: 536 ETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLA 595

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCR 633
           +A+G+I T PGTT++I K L  C +CHS +K  SK+  REI++RD  RFH+FKDG CSC 
Sbjct: 596 VAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCG 655

Query: 634 DYW 636
           D+W
Sbjct: 656 DFW 658


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  345 bits (884), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 321/602 (53%), Gaps = 63/602 (10%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +I+    +  ++ A  +F+         +N +I G      FQ  ++    M  L ++
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            + +TY  +  + A++    +G+ +H  I+K+ +                          
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELN------------------------- 321

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
                  N S  + + N LI    K   + +A ++F  MP +N+ +W +++ G++  G +
Sbjct: 322 ------PNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           ++A   FE+MP K +++ T MI+G +QNG  ++ L +F QM   G    DF    AL+AC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           + +GALE G ++H  +    +    ++G A++ MYAKCG +EAA  VF      DL++W 
Sbjct: 436 SVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWN 495

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           +MI  L  HG   +AI+ F +M+  G  PD   FL +LTAC ++G V+   ++F+SM   
Sbjct: 496 SMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLES 555

Query: 427 YFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL-------------- 464
           Y I P   H+  +V+L  R G         DS   +     +  LL              
Sbjct: 556 YGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIE 615

Query: 465 ------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
                 +L P++  +YVLLSNIYA  GRW +VA+VR LM+ ++++K+P  S+IEV   VH
Sbjct: 616 AAEQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVH 675

Query: 519 RF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLAL 575
            F  +   H     ++  LE +    ++ GY+P T++VLH+++ E+KE AL  HSEKLA+
Sbjct: 676 VFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAV 735

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
            FG+++  PG T+++ K + ICGDCH+  K+ SK+++REI++RD  RFH+FK+G CSCRD
Sbjct: 736 GFGIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRD 795

Query: 635 YW 636
           YW
Sbjct: 796 YW 797



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 140/317 (44%), Gaps = 26/317 (8%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKG 260
           N L+    K   L  A +LF  +P  +  +  +LI  +   G+L+   E+F   P   + 
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGALEAGVRVH 319
            V + AMI G++ NG+   AL +F  M     R +DFT  S LSA    VG  +   ++H
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 320 NYISCNDFG-LKGAIGTALVDMYAK--------CGNIEAASLVFGETKEKDLLTWTAMIW 370
             +     G +  ++  AL+ +Y K        C  + +A  +F E  ++D LTWT MI 
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMIT 231

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G   +     A + F+ M+    E  G  + A+++   + G  + AL     MRF   I+
Sbjct: 232 GYVRNDDLNGAREVFEAMV----ENLGAAWNAMISGYVHCGCFQEALTLCRKMRF-LGIQ 286

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL-----LSNIYAAEG 485
                +T +++  + VG    G Q   +++    +L P H  S+ L     L  +Y    
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQ--VHAYILKNELNPNH--SFCLSVSNALITLYCKNN 342

Query: 486 RWKDVARVRTLMQRRSI 502
           +  +  ++   M  R+I
Sbjct: 343 KVDEARKIFYAMPVRNI 359



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 8/170 (4%)

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           LD  + AN +     L +     +      VH ++  + F  +G     L++MY K  N+
Sbjct: 5   LDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNL 64

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE---PDGTVFLAIL 404
             A  +F E    D +  T +I      G  E       + +++GT     D   + A++
Sbjct: 65  VYARQLFEEIPNPDAIARTTLITAYCALGNLE-----LGREIFNGTPLYMRDSVFYNAMI 119

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           T   ++G    AL  F +MR D F        +V+  L+  VG + Q  Q
Sbjct: 120 TGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  344 bits (883), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 187/526 (35%), Positives = 288/526 (54%), Gaps = 67/526 (12%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y++    + A   F++ P K+    +  WN LI+G ++ G ++KA +LF +MP+KN  SW
Sbjct: 146 YLRSYGVKAALAFFNKMPVKD----IASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSW 201

Query: 234 VSLIDGFMRKGDLKKAGEL-------------------------------FEQMPEKGVV 262
            ++I G++  GDL+ A EL                               F++M  K +V
Sbjct: 202 SAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLV 261

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W +MI G+ +N  AE  L +F  M+++ VR N  ++ S L  C+ + AL  G ++H  +
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           S +         T+L+ MY KCG++++A  +F E   KD++TW AMI G A HG   +A+
Sbjct: 322 SKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKAL 381

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F KM     +PD   F+A++ AC ++G V L + +F SM+ ++ IE    H+T V++L
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441

Query: 443 LSRVGQ-DSQGYQNSQNSFT---------------------------KLLQLKPKHPSSY 474
           L R G+ D       +  FT                            LL L P   + Y
Sbjct: 442 LGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGY 501

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIH 532
           V L+NIYAA  +W  VA+VR +M+  ++ K PG+S+IE+    H F +    H     IH
Sbjct: 502 VQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIH 561

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
            KL ++    +  GY+P  E+ LH+++EE KE+ L  HSEKLA+AFGL++T PGT I++ 
Sbjct: 562 KKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVF 621

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +CGDCH  +K+ S I +REI++RD TRFH+F++G CSC DYW
Sbjct: 622 KNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 133/298 (44%), Gaps = 28/298 (9%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T +++       ++ A  IF     KNL  +N +I G  EN   +  +  F  M+   
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           VRPN L+   V    ++LS L LGR +H L+ KS +  D      L  MY + G    A+
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
           K+F E P K+    V+ WN +I+G ++ G  RKA+ LF  M     K +  ++V++I   
Sbjct: 351 KLFLEMPRKD----VITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406

Query: 241 MRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
              G +    + F+ M      E   V +T +I+   + G  ++A+++  +M        
Sbjct: 407 NHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM-------- 458

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM--YAKCGNIEAAS 351
            FT  +A+      G L    R+H  +   +F  +  +         Y +  NI AA+
Sbjct: 459 PFTPHAAI-----YGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 308/587 (52%), Gaps = 63/587 (10%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            ++ A S+F+    K   ++N +I G  ++         F  M+   V  +  T+  V  
Sbjct: 247 DVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLS 306

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A+      G+ +H  I++    +                            PE     
Sbjct: 307 ACANAGFFVHGKSVHGQIIRLQPNF---------------------------VPEA---- 335

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           ++ + N L+   SK G +  A  +F  M  K+V SW +++ G++  G L KA E+F+ MP
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 395

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            K  +SW  M++G+   G +E AL +F QM    V+  D+T   A++AC ++GAL+ G +
Sbjct: 396 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 455

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H ++    F    + G AL+ MYAKCG +  A LVF      D ++W AMI  L  HG 
Sbjct: 456 LHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH 515

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
             +A++ F +M+  G +PD   FL ILTAC ++G V    ++F+SM+ D+ I P   H+ 
Sbjct: 516 GREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 575

Query: 438 VVVNLLSRVGQDSQGYQ-----------------------NSQNSF-----TKLLQLKPK 469
            +++LL R G+  +                          N    F      +L ++ P+
Sbjct: 576 RLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ 635

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKL 527
           H  +Y+LLSN Y+A GRW D ARVR LM+ R +KK+PG S+IEV   +H F  G   H  
Sbjct: 636 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPE 695

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGT 586
           A+E++  LE I A  R+ GY+P T++VLH+++  EKE  L  HSEKLA+ FGL++  PG 
Sbjct: 696 AQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGA 755

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSC 632
           T+ ++K L ICGDCH+ M + SK   REIV+RD  RFH+FKDG CSC
Sbjct: 756 TVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 170/368 (46%), Gaps = 45/368 (12%)

Query: 66  TTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAENSHFQSCISHFVFML-R 122
            T L+++ +    +  A + FD   P  ++  + N ++   A  S     +S F  +L  
Sbjct: 95  ATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGS 154

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGR--GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
            S+RP+  ++  +  +V  +  L+      LHC ++KSG      V   L  +Y++    
Sbjct: 155 GSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC--- 211

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
                   +TPE +       W+              A ++   MP K+  +W +++ G+
Sbjct: 212 --------DTPEAS-------WD--------------ARKVLDEMPDKDDLTWTTMVVGY 242

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
           +R+GD+  A  +FE++  K  V W AMI+G+ Q+G    A  +F +M+   V  ++FT  
Sbjct: 243 VRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFT 302

Query: 301 SALSACAKVGALEAGVRVHNYIS--CNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGE 356
           S LSACA  G    G  VH  I     +F  + A  +  ALV +Y+K G I  A  +F  
Sbjct: 303 SVLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDT 362

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              KD+++W  ++ G    G  ++A++ FK M Y     +   ++ +++   + G  + A
Sbjct: 363 MNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYK----NDLSWMVMVSGYVHGGLSEDA 418

Query: 417 LNFFDSMR 424
           L  F+ MR
Sbjct: 419 LKLFNQMR 426


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 196/602 (32%), Positives = 320/602 (53%), Gaps = 63/602 (10%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +I+    +  ++ A  +F+         +N +I G      FQ  ++    M  L ++
Sbjct: 227 TTMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQ 286

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            + +TY  +  + A++    +G+ +H  I+K+ +                          
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELN------------------------- 321

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
                  N S  + + N LI    K   + +A ++F  MP +N+ +W +++ G++  G +
Sbjct: 322 ------PNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRM 375

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           ++A   FE+MP K +++ T MI+G +QNG  ++ L +F QM   G    DF    AL+AC
Sbjct: 376 EEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTAC 435

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           + +GALE G ++H  +    +    ++G A++ MYAKCG +EAA  VF      DL++W 
Sbjct: 436 SVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWN 495

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           +MI  L  HG   +AI+ F +M+  G  PD   FL +LTAC ++G V+   ++F+SM   
Sbjct: 496 SMIAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLES 555

Query: 427 YFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL-------------- 464
           Y I P   H+  +V+L  R G         DS   +     +  LL              
Sbjct: 556 YGITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIE 615

Query: 465 ------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
                 +L P++  +YVLLSNIYA  GRW DVA+VR LM+ ++++K+P  S+IEV   VH
Sbjct: 616 AAEQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVH 675

Query: 519 RF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLAL 575
            F  +   H     ++  LE +    ++ GY+P T++VLH+++ E+KE AL  HSEKLA+
Sbjct: 676 VFMVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAV 735

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
            FG+++  P  T+++ K + ICGDCH+  K+ SK+++REI++RD  RFH+FK+G CSCRD
Sbjct: 736 GFGIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRD 795

Query: 635 YW 636
           YW
Sbjct: 796 YW 797



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 135/302 (44%), Gaps = 26/302 (8%)

Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNG 275
           A +LF  +P  +  +  +LI  +   G+L+   E+F   P   +  V + AMI G++ NG
Sbjct: 67  ARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNG 126

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGALEAGVRVHNYISCNDFG-LKGAI 333
           +   AL +F  M     R +DFT  S LSA    VG  +   ++H  +     G +  ++
Sbjct: 127 DGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSV 186

Query: 334 GTALVDMYAK--------CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
             AL+ +Y K        C  + +A  +F E  ++D LTWT MI G   +     A + F
Sbjct: 187 LNALLSVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVF 246

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           + M+    E  G  + A+++   + G  + AL     MRF   I+     +T +++  + 
Sbjct: 247 EAMV----ENLGAAWNAMISGYVHCGCFQEALTLCRKMRF-LGIQFDDITYTTIISACAN 301

Query: 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL-----LSNIYAAEGRWKDVARVRTLMQRR 500
           VG    G Q   +++    +L P H  S+ L     L  +Y    +  +  ++   M  R
Sbjct: 302 VGSFQMGKQ--MHAYILKNELNPNH--SFCLSVSNALITLYCKNNKVDEARKIFYAMPVR 357

Query: 501 SI 502
           +I
Sbjct: 358 NI 359



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 8/170 (4%)

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           LD  + AN +     L +     +      VH ++  + F  +G     L++MY K  N+
Sbjct: 5   LDIRLLANRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNV 64

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE---PDGTVFLAIL 404
             A  +F E    D +  T +I      G  E       + +++GT     D   + A++
Sbjct: 65  VYARQLFEEIPNPDAIARTTLITAYCALGNLE-----LGREIFNGTPLYMRDSVFYNAMI 119

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           T   ++G    AL  F +MR D F        +V+  L+  VG + Q  Q
Sbjct: 120 TGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQ 169


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 224/740 (30%), Positives = 369/740 (49%), Gaps = 139/740 (18%)

Query: 15   PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
            P     S+   S N   + ++      N    +R  H    L NL+A S           
Sbjct: 290  PLXYFSSTFSDSMNYPNSEVLHAKLIKNGCVGIRGNH----LLNLYAKS----------- 334

Query: 75   LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
              ++++ A  +F+     ++  + VLI G A        +  F  M    V PN+ T   
Sbjct: 335  --QNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGVCPNQFTLSI 392

Query: 135  VSKSVAS-LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV------------------ 175
            V KS +S ++   +G+G+H  I+++G++ DA +   + D YV                  
Sbjct: 393  VLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEK 452

Query: 176  -------------QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
                         Q+G  + +  +F + P K+ +     WN +I+G  + G  R A+EL 
Sbjct: 453  DTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAAS----WNTMIDGLMRNGCERVALELL 508

Query: 223  GMM----PKKN---------VASWVSLI-----------------DGFMRK--------- 243
              M    P  N         +AS +S++                 DGF+R          
Sbjct: 509  YKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKC 568

Query: 244  GDLKKAGELFEQMPEKGV---------------VSWTAMINGFSQNGEAEKALAMFFQML 288
            G+++KA  +F+ +P++                 VSW++M++G+ QNG  E AL  F  M+
Sbjct: 569  GEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMI 628

Query: 289  DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             + V  + FT+ S +SACA  G LE G +VH YI     GL   +G++++DMY KCG++ 
Sbjct: 629  CSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLN 688

Query: 349  AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
             A L+F + K+++++ WT+MI G A+HG+  +A++ F+ M+  G  P+   F+ +LTAC 
Sbjct: 689  DAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACS 748

Query: 409  YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---------- 458
            ++G ++    +F  MR  Y I P  +H T +V+L  R G+ ++  +   N          
Sbjct: 749  HAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVW 808

Query: 459  -SF-----------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
             SF                  KLL+L+P     Y+L S+I A E RW++ A++R+LMQ+R
Sbjct: 809  RSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQR 868

Query: 501  SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
             +KK+P  S+I++   VH F  G   H    +I+S L++++   +E GY      V+ ++
Sbjct: 869  GVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDV 928

Query: 559  KEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            ++E+ + L G HSEKLA+A+G+I T PGT I+++K L +C DCH+ +KYAS++  REI++
Sbjct: 929  EQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIII 988

Query: 618  RDT-RFHYFKDGTCSCRDYW 636
            RD  RFH+FK G CSC DYW
Sbjct: 989  RDIHRFHHFKHGHCSCADYW 1008


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 218/634 (34%), Positives = 334/634 (52%), Gaps = 68/634 (10%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           SS S  +LR+IHA +++    AS       ++S +    + YA  +     P  L   N 
Sbjct: 26  SSQSQFRLREIHAHLLVSGRLASPSHHADFVASLASSSHLSYARLLLPQ-RPATLLAHNG 84

Query: 100 LIRGLAENSHFQSCIS-HFVFMLRLSVRPNRLTYPFVSKSVASLSLL----SLGRGLHCL 154
           L+R LA       C    F     L + P+  ++ F+ ++  SL+       +   +   
Sbjct: 85  LLRALARGP----CPGLAFAAFRELPLAPDHYSFTFLVRAATSLAAAASATPVPTDVAVN 140

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           ++   V   AF   H  D +VQ G       V D                       +G 
Sbjct: 141 LLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGD-----------------------VGA 177

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           +R A   F  +   +V    +++      GD+  A ELF+ MP++  V+W AM+ G+ + 
Sbjct: 178 VRAA---FAEIVSPDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRV 234

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G + +AL +F +M  AGV  ++ T+VS L+ACA++GALE G+ VH+Y+      +   +G
Sbjct: 235 GRSREALGLFDEMQKAGVAVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLG 294

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TALVDMY+KCG +  +  VF   +E+++ TWT+ + GLA++G  E+ ++ FK+M  +G E
Sbjct: 295 TALVDMYSKCGVVTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGME 354

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQG 452
           P+G  F+A+L  C  +G V+     FDSM+  + +EP ++H+  +V+L  R G+  D+  
Sbjct: 355 PNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVD 414

Query: 453 YQNS--------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
           + NS                          +++  KL +++ K+ +++VLLSNIYA    
Sbjct: 415 FINSMPVEPHEGVWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHN 474

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           WK V++VR +M+ + +KK PG S IEV+G VH F  G   H   K+I + L ++    R 
Sbjct: 475 WKGVSKVRNMMKSKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRL 534

Query: 545 QGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
           QGY   T+ VL +I +EEKE A+  HSEKLALAFGLI     T I+IVK L +C DCH  
Sbjct: 535 QGYAANTKEVLFDIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDY 594

Query: 604 MKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            K  SK+  REIV+RD  RFH+FK G CSCRDYW
Sbjct: 595 TKLISKVFDREIVMRDRNRFHHFKHGACSCRDYW 628



 Score = 43.1 bits (100), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 48/245 (19%), Positives = 99/245 (40%), Gaps = 20/245 (8%)

Query: 29  ITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           ++E  ++S++ +      L +   +H+ +    +  S  + T L+   S    +  ++ +
Sbjct: 254 VSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEV 313

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+    +N++ +   + GLA N   + C+  F  M    + PN +T+  V +  +   L+
Sbjct: 314 FETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRGCSVAGLV 373

Query: 146 SLGRG-LHCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
             GR     +  K  VE     Y   V     D+Y + G+   A    +  P +      
Sbjct: 374 EEGRACFDSMKDKHKVEPWLEHYGCMV-----DLYGRAGRLDDAVDFINSMPVEPHEG-- 426

Query: 200 LLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
            +W  L+N     + +   + A+     +  KN A+ V L + +    + K   ++   M
Sbjct: 427 -VWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMM 485

Query: 257 PEKGV 261
             KGV
Sbjct: 486 KSKGV 490


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 191/572 (33%), Positives = 312/572 (54%), Gaps = 63/572 (11%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N +I G      ++        M  L ++ +  TY  V  + ++  L ++GR +H  ++
Sbjct: 242 WNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVL 301

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           ++ V+                             P  +   SV   N LI   ++ G L 
Sbjct: 302 RTVVQ-----------------------------PSGHFVLSVN--NALITLYTRCGKLV 330

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           +A  +F  MP K++ SW +++ G +    +++A  +F +MP + +++WT MI+G +QNG 
Sbjct: 331 EARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGF 390

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            E+ L +F QM   G+   D+    A+++C+ +G+L+ G ++H+ I         ++G A
Sbjct: 391 GEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSLSVGNA 450

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ MY++CG +EAA  VF      D ++W AMI  LA HG   QAIQ ++KM+     PD
Sbjct: 451 LITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKEDILPD 510

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
              FL IL+AC ++G VK   ++FD+MR  Y I P   H++ +++LL R G  S+    +
Sbjct: 511 RITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSEAKNVT 570

Query: 457 QN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
           ++                            +  +LL+L P+   +Y+ LSN+YAA G+W 
Sbjct: 571 ESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAALGQWD 630

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQG 546
           +VARVR LM+ R +KK+PG S+IEV   VH F  +   H     ++  LE ++   R+ G
Sbjct: 631 EVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHEMRKLG 690

Query: 547 YMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMK 605
           Y+P T++VLH+++ E+KE AL  HSEKLA+ +G+++   G TI++ K L ICGDCH+  K
Sbjct: 691 YVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFK 750

Query: 606 YASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           Y SK+  REI++RD  RFH+F++G CSC +YW
Sbjct: 751 YISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 163/386 (42%), Gaps = 74/386 (19%)

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLR 122
            T ++S+ S   +I  A  +F+  TP ++     +N +I   + +    + +  FV M R
Sbjct: 65  ATTMLSAYSAAGNIKLAHQLFNA-TPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKR 123

Query: 123 LSVRPNRLTYPFVSKSVASLSLL----SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
           L   P+  T+   S  + +LSL+    +  + LHC + K G      V   L   YV   
Sbjct: 124 LGFVPDPFTF---SSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCA 180

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP--KKNVASWVSL 236
            +                        L+N C  +   RK   LF   P  +++  +W ++
Sbjct: 181 SSP-----------------------LVNSCVLMAAARK---LFDEAPPGRRDEPAWTTI 214

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I G++R  DL  A EL E M +   V+W AMI+G+   G  E+A  +  +M   G++ ++
Sbjct: 215 IAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDE 274

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG----AIGTALVDMYAKCG------- 345
           +T  S +SA +  G    G +VH Y+        G    ++  AL+ +Y +CG       
Sbjct: 275 YTYTSVISAASNAGLFNIGRQVHAYVLRTVVQPSGHFVLSVNNALITLYTRCGKLVEARR 334

Query: 346 ------------------------NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
                                    IE A+ +F E   + LLTWT MI GLA +G  E+ 
Sbjct: 335 VFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLAQNGFGEEG 394

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++ F +M   G EP    +   + +C
Sbjct: 395 LKLFNQMKLEGLEPCDYAYAGAIASC 420



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 103/257 (40%), Gaps = 45/257 (17%)

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE- 258
           L+ N LI+   K   +  A  LF  +PK ++ +  +++  +   G++K A +LF   P  
Sbjct: 32  LIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAAGNIKLAHQLFNATPMS 91

Query: 259 -KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA---------- 307
            +  VS+ AMI  FS + +   AL +F QM   G   + FT  S L A +          
Sbjct: 92  IRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGFVPDPFTFSSVLGALSLIADEETHCQ 151

Query: 308 -------KVGALEAGVRVHNYISC----------NDFGLKGAIG---------------- 334
                  K GAL     ++  +SC          N   L  A                  
Sbjct: 152 QLHCEVFKWGALSVPSVLNALMSCYVSCASSPLVNSCVLMAAARKLFDEAPPGRRDEPAW 211

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           T ++  Y +  ++ AA  +     +   + W AMI G    G YE+A    ++M   G +
Sbjct: 212 TTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSLGIQ 271

Query: 395 PDGTVFLAILTACWYSG 411
            D   + ++++A   +G
Sbjct: 272 LDEYTYTSVISAASNAG 288


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  344 bits (883), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 200/544 (36%), Positives = 299/544 (54%), Gaps = 76/544 (13%)

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           E D F    +   YV+      A   FD  P K+ +     WN +I G ++ G + KA E
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAAS----WNTMITGYARRGEMEKARE 176

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI------------ 268
           LF  M +KN  SW ++I G++  GDL+KA   F+  P +GVV+WTAMI            
Sbjct: 177 LFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELA 236

Query: 269 --------------------NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
                               +G+ +N   E  L +F  ML+ G+R N   + SAL  C++
Sbjct: 237 EAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSE 296

Query: 309 VGALEAGVRVHNYIS----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           + AL+ G ++H  +S    CND        T+L+ MY KCG +  A  +F   K+KD++ 
Sbjct: 297 LSALQLGRQIHQIVSKSTLCNDV----TALTSLISMYCKCGELGDAWKLFEVMKKKDVVA 352

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI G A HG  ++A+  F++M+ +   PD   F+A+L AC ++G V + + +F+SM 
Sbjct: 353 WNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMV 412

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---S 456
            DY +EP   H+T +V+LL R G+  +                          ++N   +
Sbjct: 413 RDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELA 472

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           + +  KLLQL  ++ + YV L+NIYA++ RW+DVARVR  M+  ++ K PG+S+IE+   
Sbjct: 473 EFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNK 532

Query: 517 VHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKL 573
           VH F +    H     IH KL+++    +  GY P  E+ LHN++EE KE+ L  HSEKL
Sbjct: 533 VHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKL 592

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFG I+   G+ I++ K L ICGDCH  +K+ S+I +REI++RD TRFH+FKDG+CSC
Sbjct: 593 AVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSC 652

Query: 633 RDYW 636
            DYW
Sbjct: 653 GDYW 656



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 117/236 (49%), Gaps = 16/236 (6%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASW 233
           V+ G   GA +VF     KN     + WN L+ G SK    + +A +LF  +P+ +  S+
Sbjct: 72  VRSGDIDGALRVFHGMRAKN----TITWNSLLIGISKDPSRMMEAHQLFDEIPEPDTFSY 127

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
             ++  ++R  + +KA   F++MP K   SW  MI G+++ GE EKA  +F+ M++    
Sbjct: 128 NIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITGYARRGEMEKARELFYSMME---- 183

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASL 352
            N+ +  + +S   + G LE               ++G +  TA++  Y K   +E A  
Sbjct: 184 KNEVSWNAMISGYIECGDLEKASHFFKVAP-----VRGVVAWTAMITGYMKAKKVELAEA 238

Query: 353 VFGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +F + T  K+L+TW AMI G   + R E  ++ F+ M+  G  P+ +   + L  C
Sbjct: 239 MFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGC 294



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/323 (25%), Positives = 136/323 (42%), Gaps = 36/323 (11%)

Query: 67  TQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
           T +I+     K ++ A ++F   T  KNL  +N +I G  ENS  +  +  F  ML   +
Sbjct: 221 TAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGI 280

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           RPN           + LS L LGR +H ++ KS +  D      L  MY + G+   A+K
Sbjct: 281 RPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWK 340

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKKNVASWVSLIDGFM--- 241
           +F    E  K + V+ WN +I+G ++ G   KA+ LF  M+  K    W++ +   +   
Sbjct: 341 LF----EVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACN 396

Query: 242 RKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
             G +      FE M     V      +T M++   + G+ E+AL +        +R+  
Sbjct: 397 HAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKL--------IRSMP 448

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGL--------KGAIG-TALVDMYAKCGNI 347
           F   +A+      G L    RVH  +   +F          + A G   L ++YA     
Sbjct: 449 FRPHAAV-----FGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRW 503

Query: 348 EAASLVFGETKEKDLLTWTAMIW 370
           E  + V    KE +++      W
Sbjct: 504 EDVARVRKRMKESNVVKVPGYSW 526



 Score = 43.1 bits (100), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 48/231 (20%), Positives = 91/231 (39%), Gaps = 12/231 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQIH  +    L       T LIS       +  A  +F+    K++  +N +I G A++
Sbjct: 304 RQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQH 363

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFV 166
            +    +  F  M+   +RP+ +T+  V  +     L+++G      ++    VE     
Sbjct: 364 GNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDH 423

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFG 223
              + D+  + GK   A K+    P +  +    ++  L+  C     +     A E   
Sbjct: 424 YTCMVDLLGRAGKLEEALKLIRSMPFRPHAA---VFGTLLGACRVHKNVELAEFAAEKLL 480

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMIN 269
            +  +N A +V L + +  K   +    + ++M E  VV     SW  + N
Sbjct: 481 QLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRN 531


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 228/676 (33%), Positives = 340/676 (50%), Gaps = 88/676 (13%)

Query: 40  SSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALS--IFDHFTP-KNLH 95
           S++S +  R +HA+I+   +      +   LI+   ++  +D+  S  +    TP +N+ 
Sbjct: 18  SASSMRLGRVVHARIVKTLDSPPPPFLANYLIN---MYSKLDHPESARLVLRLTPARNVV 74

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +  LI GLA+N HF + +  F  M R  V PN  T+P   K+VASL L   G+ +H L 
Sbjct: 75  SWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALA 134

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------- 206
           VK G   D FV     DMY +      A K+FDE PE+N    +  WN  I         
Sbjct: 135 VKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAFISNSVTDGRP 190

Query: 207 --------------------------NGCSKIGYLRKAVELFGMMPKKNVASWVS----L 236
                                     N CS   +L   ++L G++ +    + VS    L
Sbjct: 191 REAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGL 250

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           ID + +   ++ +  +F +M  K  VSW +++  + QN E EKA  ++ +     V  +D
Sbjct: 251 IDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSD 310

Query: 297 FTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           F + S LSACA +  LE G  +H +   +C +  +   +G+ALVDMY KCG IE +   F
Sbjct: 311 FMISSVLSACAGMAGLELGRSIHAHAVKACVERTI--FVGSALVDMYGKCGCIEDSEQAF 368

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY--SGTEPDGTVFLAILTACWYSGQ 412
            E  EK+L+T  ++I G A  G+ + A+  F++M     G  P+   F+++L+AC  +G 
Sbjct: 369 DEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGA 428

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------Q 454
           V+  +  FDSMR  Y IEP  +H++ +V++L R G   + Y                  Q
Sbjct: 429 VENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQ 488

Query: 455 NSQNSFTK----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
           N+     K          L +L PK   ++VLLSN +AA GRW +   VR  ++   IKK
Sbjct: 489 NACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKK 548

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEK 562
             G+S+I V   VH F+A    H L KEI + L  +       GY P  +  L++++EE+
Sbjct: 549 GAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEE 608

Query: 563 EEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           + A +  HSEKLALAFGL+       I+I K L ICGDCHS  K+ S   +REI++RD  
Sbjct: 609 KAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNN 668

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH FKDG CSC+DYW
Sbjct: 669 RFHRFKDGICSCKDYW 684



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 6/212 (2%)

Query: 199 VLLWNVLINGCSKIGYLRKA--VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
           +LL N +     ++G +  A  V+     P   +A++  LI+ + +    + A  +    
Sbjct: 11  LLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANY--LINMYSKLDHPESARLVLRLT 68

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           P + VVSWT++I+G +QNG    AL  FF+M   GV  NDFT   A  A A +     G 
Sbjct: 69  PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGK 128

Query: 317 RVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           ++H   + C    L   +G +  DMY K    + A  +F E  E++L TW A I      
Sbjct: 129 QIHALAVKCGRI-LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTD 187

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           GR  +AI+ F +       P+   F A L AC
Sbjct: 188 GRPREAIEAFIEFRRIDGHPNSITFCAFLNAC 219


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  344 bits (882), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 282/488 (57%), Gaps = 42/488 (8%)

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFM 241
           +F   P+ N +     +  +I  C+ +  LR   E+   +      S      +LI  + 
Sbjct: 117 LFSGAPQSNYT-----FTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA 171

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           +  D+K A ++F+ MP++ +++W ++I+G+ QNG  ++++ +F  M+++G + +  T+VS
Sbjct: 172 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 231

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LS+C+++GAL+ G  +H+Y   N F L   +GT+L++MY +CGN+  A  VF   KE++
Sbjct: 232 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 291

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           ++TWTAMI G  +HG   QA++ F +M   G  P+   F+A+L+AC +SG +      F 
Sbjct: 292 VVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFS 351

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------- 462
           SM+  Y + P V+H+  +V++  R G  +  YQ  +    K                   
Sbjct: 352 SMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRN 411

Query: 463 ----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     +L ++P++P  YV+LSNIYA  GR   V  VR +M RR +KK  G+S IE
Sbjct: 412 FDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIE 471

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCH 569
           +N   + F  G   H     I+  L+++M    E GY+P  E ++H+++EE+ + AL  H
Sbjct: 472 INRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYH 531

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEKLALAFGL++T  G TI+IVK L IC DCHS +K+ S I+ REI++RD  RFH+FKDG
Sbjct: 532 SEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDG 591

Query: 629 TCSCRDYW 636
           +CSC DYW
Sbjct: 592 SCSCLDYW 599



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 108/222 (48%), Gaps = 7/222 (3%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LI      G +  A  LF  +P      + +++   S+ G +   +  + +ML +G   +
Sbjct: 65  LISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQS 124

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           ++T  S + ACA + AL  G  +H+++    +G    +  AL+ +YAK  +++ A  VF 
Sbjct: 125 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFD 184

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              ++ ++ W ++I G   +G  +++I  F  MM SG +PD    +++L++C   G +  
Sbjct: 185 AMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDF 244

Query: 416 AL---NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
                ++ D   FD     +V   T ++N+ +R G  S+  +
Sbjct: 245 GCWLHDYADGNGFDL----NVVLGTSLINMYTRCGNVSKARE 282



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 20/343 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S  P +N T T +I      ++ +  ++IH+ +++    +   +   LI+  +    +  
Sbjct: 119 SGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKV 178

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    + +  +N LI G  +N   Q  I  F  M+    +P+  T   +  S + 
Sbjct: 179 AKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ 238

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L  G  LH     +G + +  +   L +MY + G    A +VFD   E+N    V+ 
Sbjct: 239 LGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN----VVT 294

Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           W  +I+G    GY R+A+ELF  M    P+ N  ++V+++      G +     +F  M 
Sbjct: 295 WTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 354

Query: 258 E-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV--SALSACAKVG 310
           E      GV     M++ F + G    A    +Q +   +       V  S L AC    
Sbjct: 355 EAYGLVPGVEHNVCMVDMFGRAGLLNDA----YQFIKKFIPKEPGPAVWTSMLGACRMHR 410

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
             + GV+V  ++   +    G     L ++YA  G ++   +V
Sbjct: 411 NFDLGVKVAEHVLSVEPENPGHY-VMLSNIYALAGRMDRVEMV 452


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 206/665 (30%), Positives = 338/665 (50%), Gaps = 76/665 (11%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S  Q +Q+HAQ I     + +  +  +IS  +  K +  AL +F       +  +  +IR
Sbjct: 20  SKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIR 78

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
              + S F   ++ FV M      P+   +P V KS   +  L  G  +H  IV+ G++ 
Sbjct: 79  CFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDC 138

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV--- 219
           D +    L +MY +L       KVF+  P K+    V+ +N +I G ++ G    A+   
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKD----VVSYNTVIAGYAQSGMYEDALRMV 194

Query: 220 --------------------------------ELFGMMPKKNVASWV----SLIDGFMRK 243
                                           E+ G + +K + S V    SL+D + + 
Sbjct: 195 REMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKS 254

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
             ++ +  +F  +  +  +SW +++ G+ QNG   +AL +F QM+ A VR       S +
Sbjct: 255 ARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVI 314

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA +  L  G ++H Y+    FG    I +ALVDMY+KCGNI+AA  +F      D +
Sbjct: 315 PACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEV 374

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +WTA+I G A+HG   +A+  F++M   G +P+   F+A+LTAC + G V  A  +F+SM
Sbjct: 375 SWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSM 434

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QN 455
              Y +   ++H+  V +LL R G+  + Y                            + 
Sbjct: 435 TKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLEL 494

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
           ++    K+  +  ++  +YVL+ N+YA+ GRWK++A++R  ++++ ++K P  S+IE+  
Sbjct: 495 AEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKN 554

Query: 516 HVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEK 572
             H F +G   H     I+  L+ +M    ++GY+  T  VLH++ EE K E L  HSE+
Sbjct: 555 KTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSER 614

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AFG+I T PGTTI++ K + IC DCH  +K+ SKI++REI++RD +RFH+F  G+CS
Sbjct: 615 LAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCS 674

Query: 632 CRDYW 636
           C DYW
Sbjct: 675 CGDYW 679


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 206/671 (30%), Positives = 344/671 (51%), Gaps = 89/671 (13%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K++++ S+ I+  +I+    S  +  Q+++IH+  I +  FA + +   LI + +   S+
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSM 310

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A+ +F+    K++  +N ++ G  ++ +F +    F  M + ++  + +T+  V    
Sbjct: 311 NDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAG- 369

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                                             Y Q G ++ A   F +        + 
Sbjct: 370 ----------------------------------YAQRGCSQEALDAFQQMILDGSEPNS 395

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------------WVSLIDGFMRK 243
           +    L++ C+ +G L + +E+     KK + S                + +LID + + 
Sbjct: 396 VTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKC 455

Query: 244 GDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTV 299
              K A  +F+ +P  E+ VV+WT MI G++Q G++  AL +F +M+     V  N +T+
Sbjct: 456 RSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTI 515

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGET 357
              L ACA + AL  G ++H Y++ +         +   L+DMY+KCG+++ A  VF   
Sbjct: 516 SCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSM 575

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            +++ ++WT+M+ G  +HGR ++A+  F KM  +G  PD   FL +L AC +SG V   L
Sbjct: 576 PKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGL 635

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------------- 458
           N+FD MR DY +  S +H+  V++LL+R G+  + ++  Q                    
Sbjct: 636 NYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRV 695

Query: 459 ---------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
                    +  KL+ +K ++  SY L+SNIYA   RWKDVAR+R LM++  IKK PG S
Sbjct: 696 HSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCS 755

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEAL 566
           +++       F  G   H L+ EI+S LE ++   +  GY+P T + LH++  EEK   L
Sbjct: 756 WVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLL 815

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
             HSEKLALA+GL+ T+PG  I+I K L +CGDCHS   Y SKI   EI++RD +RFH+F
Sbjct: 816 SEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHF 875

Query: 626 KDGTCSCRDYW 636
           K+G+CSC  YW
Sbjct: 876 KNGSCSCGGYW 886



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 214/494 (43%), Gaps = 84/494 (17%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGL 104
           R +H  I  +   ++  +   L++  S   S++ A  +FD  T K +     +N ++   
Sbjct: 169 RALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAH 228

Query: 105 AENSHFQSCISHFVFMLRL------SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
            + S+ ++ +  F  M  +      + R + ++   +  + ASL  L   + +H   +++
Sbjct: 229 VKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRN 288

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           G   DAFV   L D Y + G    A KVF+    K+    V+ WN ++ G ++ G    A
Sbjct: 289 GTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKD----VVSWNAMVTGYTQSGNFGAA 344

Query: 219 VELFGMMPKKN----VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
            ELF  M K+N    V +W ++I G+ ++G  ++A + F+QM                  
Sbjct: 345 FELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQM------------------ 386

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-- 332
                       +LD G   N  T++S LSACA +GAL  G+ +H Y       LK    
Sbjct: 387 ------------ILD-GSEPNSVTIISLLSACASLGALSQGMEIHAY------SLKKCLL 427

Query: 333 ----------------IGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAI 374
                           +  AL+DMY+KC + +AA  +F     +E++++TWT MI G A 
Sbjct: 428 SLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQ 487

Query: 375 HGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           +G    A++ F +M+       P+      IL AC +   +++       +   +  EPS
Sbjct: 488 YGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPS 547

Query: 433 VKH-HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
           V      ++++ S+ G D    +N  +S  K      ++  S+  + + Y   GR K+  
Sbjct: 548 VYFVANCLIDMYSKCG-DVDTARNVFDSMPK------RNEVSWTSMMSGYGMHGRGKEAL 600

Query: 492 RVRTLMQRRSIKKD 505
            +   MQ+     D
Sbjct: 601 DIFDKMQKAGFVPD 614



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 104/469 (22%), Positives = 179/469 (38%), Gaps = 102/469 (21%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIIL--------------------HNLFASSRITT 67
           +++ TH  SL+    S   +RQIH +II                     H+  +   + T
Sbjct: 28  DVSPTHFASLLKECRSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGT 87

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            +++S     +   ALS+ +  TP     +N+L+R   +  H    I             
Sbjct: 88  GVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAI------------- 134

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
                                 G+ C ++++G + D F   +             A K  
Sbjct: 135 ----------------------GVSCRMLRAGTKPDHFTLPY-------------ALKAC 159

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
            E P      + L   +  NG                  + NV    +L+  + R G L+
Sbjct: 160 GELPSYCCGRA-LHGLICCNGF-----------------ESNVFVCNALVAMYSRCGSLE 201

Query: 248 KAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQML------DAGVRANDFT 298
            A  +F+++  KG   V+SW +++    +      AL +F +M           R++  +
Sbjct: 202 DASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIIS 261

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +V+ L ACA + AL     +H+Y   N       +  AL+D YAKCG++  A  VF   +
Sbjct: 262 IVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVME 321

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KD+++W AM+ G    G +  A + F+ M       D   + A++      G  + AL+
Sbjct: 322 FKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALD 381

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLS---RVGQDSQGYQNSQNSFTKLL 464
            F  M  D     S  +   +++LLS    +G  SQG +    S  K L
Sbjct: 382 AFQQMILD----GSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCL 426


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 299/573 (52%), Gaps = 80/573 (13%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +++S + +S    +H  ++KS    D F+   L  MY +LG    A ++FDE P K+   
Sbjct: 128 AISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKD--- 184

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF----------------------------------- 222
            ++ WN L++G S  GYL   +  F                                   
Sbjct: 185 -LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 223 -------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                  GM  K  V +  SLI+ + + G L  A +LFE+MP + +VSW +M+   + NG
Sbjct: 244 HGVVVKLGMSGKAKVVN--SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNG 301

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
            AEK + +F  M  AG+  +  T+V+ L AC   G       +H YI    F     I T
Sbjct: 302 YAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 361

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+++YAK G + A+  +F E K++D + WTAM+ G A+H    +AI+ F  M+  G E 
Sbjct: 362 ALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 421

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
           D   F  +L+AC +SG V+    +F+ M   Y +EP + H++ +V+LL R G+    Y+ 
Sbjct: 422 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 481

Query: 456 ----------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                        +    +LL L P    +Y++LSNIY+A G W
Sbjct: 482 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLW 541

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ 545
           +D ++VR LM+ R + ++PG S+IE    +HRF  G   H  + EIH+KLE+++   RE 
Sbjct: 542 RDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREA 601

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           G  P TE+VLH+I EE K + +  HSEKLA+AFGL+ T  G  + I K L ICGDCHS  
Sbjct: 602 GCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTA 661

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+AS + +R I++RD+ RFH+F DG CSCRDYW
Sbjct: 662 KFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 148/351 (42%), Gaps = 19/351 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S +  N +T   ++S      +  + + +H  ++   +   +++   LI+       +D 
Sbjct: 215 SGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 274

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    ++L  +N ++     N + +  +  F  M R  + P++ T   + ++   
Sbjct: 275 ASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTD 334

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
             L      +H  I + G   D  +   L ++Y +LG+   +  +F+E  ++++    + 
Sbjct: 335 TGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR----IA 390

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP 257
           W  ++ G +     R+A++LF +M K+ V     ++  L+      G +++  + FE M 
Sbjct: 391 WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMS 450

Query: 258 EKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           E   V      ++ M++   ++G  E A  +   M    +  +     + L AC   G +
Sbjct: 451 EVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM---PMEPSSGVWGALLGACRVYGNV 507

Query: 313 EAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           E G  V    +S +    +  I   L ++Y+  G    AS V    KE+ L
Sbjct: 508 ELGKEVAEQLLSLDPSDHRNYI--MLSNIYSAAGLWRDASKVRALMKERRL 556



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 6/112 (5%)

Query: 298 TVVSALSACAKVGALEA-GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           ++V A+S+C  V    A   RV   ++ +D    G IG  LV MY K G  E A  +F E
Sbjct: 124 SLVFAISSCTSVSYCSAIHARVIKSLNYSD----GFIGDRLVSMYFKLGYDEDAQRLFDE 179

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTAC 407
              KDL++W +++ GL+  G     +  F +M   SG +P+    L++++AC
Sbjct: 180 MPNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSAC 231


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 218/674 (32%), Positives = 335/674 (49%), Gaps = 75/674 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +++    S   +  R++HA +I             L+   S    I  A  +F      +
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETD 267

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +N  I G   + H Q  +   + M    + PN  T   + K+ A     +LGR +H 
Sbjct: 268 VVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHG 327

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            +VK+  + D ++   L DMY + G    A KVFD  P+++    ++LWN LI+GCS   
Sbjct: 328 FMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRD----LVLWNALISGCSHGA 383

Query: 214 YLRKAVELFGMMPK--------------KNVASWVS------------------------ 235
              +A+ LF  M K              K+ AS  +                        
Sbjct: 384 QHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGFLSDSHVVN 443

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID + +   L  A  +FE+     ++++T+MI   SQ    E A+ +F +ML  G+  
Sbjct: 444 GLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDP 503

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F + S L+ACA + A E G +VH ++    F      G ALV  YAKCG+IE A L F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAF 563

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               EK +++W+AMI GLA HG  ++A+  F +M+     P+     ++L AC ++G V 
Sbjct: 564 SGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVD 623

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNSQNSFT----------- 461
            A  +F+SM+  + IE + +H+  +++LL R G+  D+    NS    T           
Sbjct: 624 EAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAA 683

Query: 462 ---------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                          KL  L+P+   ++VLL+N YA+ G W DVA+VR LM+   +KK+P
Sbjct: 684 SRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEP 743

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKE 563
             S++E+   VH F  G   H  A++I++KL+++     + GY+P  E  LH++ K EKE
Sbjct: 744 AMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKE 803

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSE+LA+AF LI T  G  I++ K L IC DCH+  K+ S I  REI++RD  RF
Sbjct: 804 LLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRF 863

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DG CSCRDYW
Sbjct: 864 HHFRDGACSCRDYW 877



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 177/405 (43%), Gaps = 49/405 (12%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FN 98
           ++ S  Q   IHA ++   LFA  R    L+S  S  +    A  +FD   P   H+ ++
Sbjct: 16  ATQSLLQGAHIHAHLLKSGLFAVFR--NHLLSFYSKCRLPGSARRVFDEI-PDPCHVSWS 72

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
            L+   + N+  +  +  F  M   SVR N    P V K          G  LH L + +
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF---GTQLHALAMAT 129

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           G+  D FV   L  MY   G    A  VFDE   +  + S   WN L++   K      A
Sbjct: 130 GLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVS---WNGLMSAYVKNDRCSHA 186

Query: 219 VELFGMMP---------------------------------------KKNVASWVSLIDG 239
           V++FG M                                         K+V +  +L+D 
Sbjct: 187 VKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDM 246

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + + GD++ A  +F ++PE  VVSW A I+G   +G  + AL +  QM  +G+  N FT+
Sbjct: 247 YSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTL 306

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            S L ACA  GA   G ++H ++   +      I   LVDMYAK G ++ A  VF    +
Sbjct: 307 SSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQ 366

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           +DL+ W A+I G +   ++ +A+  F +M   G + + T   A+L
Sbjct: 367 RDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVL 411



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 184/428 (42%), Gaps = 48/428 (11%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
            +KSS    N  T + I+     S +    RQIH  ++  N  + + I   L+   + H 
Sbjct: 293 QMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHG 352

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            +D A  +FD    ++L ++N LI G +  +     +S F  M +     NR T   V K
Sbjct: 353 LLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLK 412

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           S ASL  +S  R +H L  K G   D+ V   L D Y +      A++VF    EK+ S 
Sbjct: 413 STASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVF----EKHGSY 468

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------------------- 228
            ++ +  +I   S+  +   A++LF  M +K                             
Sbjct: 469 DIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVH 528

Query: 229 ----------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                     +V +  +L+  + + G ++ A   F  +PEKGVVSW+AMI G +Q+G  +
Sbjct: 529 AHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGK 588

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TA 336
           +AL +F +M+D  +  N  T+ S L AC   G ++   R  N +    FG++        
Sbjct: 589 RALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMK-EMFGIERTEEHYAC 647

Query: 337 LVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           ++D+  + G + +A  LV     + +   W A++    +H   E      +K+     E 
Sbjct: 648 MIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEK 707

Query: 396 DGT-VFLA 402
            GT V LA
Sbjct: 708 SGTHVLLA 715



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 144/323 (44%), Gaps = 50/323 (15%)

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           P +++  A+ SLL  G  +H  ++KSG+   A  R HL   Y +      A +VFDE P+
Sbjct: 9   PLLTRYAATQSLLQ-GAHIHAHLLKSGLF--AVFRNHLLSFYSKCRLPGSARRVFDEIPD 65

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------------------- 231
                  + W+ L+   S     R A+  F  M   +V                      
Sbjct: 66  PCH----VSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGFGTQ 121

Query: 232 ------------------SWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFS 272
                             + V++  GF   G + +A  +F++   E+  VSW  +++ + 
Sbjct: 122 LHALAMATGLGGDIFVANALVAMYGGF---GFVDEARMVFDEAGCERNTVSWNGLMSAYV 178

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           +N     A+ +F +M+  GV+ N+F     ++AC     LEAG +VH  +    +     
Sbjct: 179 KNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVF 238

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
              ALVDMY+K G+I  A++VFG+  E D+++W A I G  +HG  + A++   +M  SG
Sbjct: 239 TANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 393 TEPDGTVFLAILTACWYSGQVKL 415
             P+     +IL AC  SG   L
Sbjct: 299 LVPNVFTLSSILKACAGSGAFNL 321


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 282/488 (57%), Gaps = 42/488 (8%)

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFM 241
           +F   P+ N +     +  +I  C+ +  LR   E+   +      S      +LI  + 
Sbjct: 181 LFSGAPQSNYT-----FTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYA 235

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           +  D+K A ++F+ MP++ +++W ++I+G+ QNG  ++++ +F  M+++G + +  T+VS
Sbjct: 236 KASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVS 295

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LS+C+++GAL+ G  +H+Y   N F L   +GT+L++MY +CGN+  A  VF   KE++
Sbjct: 296 LLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN 355

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           ++TWTAMI G  +HG   QA++ F +M   G  P+   F+A+L+AC +SG +      F 
Sbjct: 356 VVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFS 415

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------- 462
           SM+  Y + P V+H+  +V++  R G  +  YQ  +    K                   
Sbjct: 416 SMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRN 475

Query: 463 ----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     +L ++P++P  YV+LSNIYA  GR   V  VR +M RR +KK  G+S IE
Sbjct: 476 FDLGVKVAEHVLSVEPENPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIE 535

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCH 569
           +N   + F  G   H     I+  L+++M    E GY+P  E ++H+++EE+ + AL  H
Sbjct: 536 INRKTYLFSMGDKSHPQTNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYH 595

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEKLALAFGL++T  G TI+IVK L IC DCHS +K+ S I+ REI++RD  RFH+FKDG
Sbjct: 596 SEKLALAFGLLKTNQGETIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDG 655

Query: 629 TCSCRDYW 636
           +CSC DYW
Sbjct: 656 SCSCLDYW 663



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 52/214 (24%), Positives = 106/214 (49%), Gaps = 7/214 (3%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +  A  LF  +P      + +++   S+ G +   +  + +ML +G   +++T  S +
Sbjct: 137 GSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVI 196

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA + AL  G  +H+++    +G    +  AL+ +YAK  +++ A  VF    ++ ++
Sbjct: 197 KACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTII 256

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL---NFF 420
            W ++I G   +G  +++I  F  MM SG +PD    +++L++C   G +       ++ 
Sbjct: 257 AWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYA 316

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           D   FD     +V   T ++N+ +R G  S+  +
Sbjct: 317 DGNGFDL----NVVLGTSLINMYTRCGNVSKARE 346



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 144/343 (41%), Gaps = 20/343 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S  P +N T T +I      ++ +  ++IH+ +++    +   +   LI+  +    +  
Sbjct: 183 SGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKV 242

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    + +  +N LI G  +N   Q  I  F  M+    +P+  T   +  S + 
Sbjct: 243 AKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQ 302

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L  G  LH     +G + +  +   L +MY + G    A +VFD   E+N    V+ 
Sbjct: 303 LGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN----VVT 358

Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           W  +I+G    GY R+A+ELF  M    P+ N  ++V+++      G +     +F  M 
Sbjct: 359 WTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMK 418

Query: 258 E-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV--SALSACAKVG 310
           E      GV     M++ F + G    A    +Q +   +       V  S L AC    
Sbjct: 419 EAYGLVPGVEHNVCMVDMFGRAGLLNDA----YQFIKKFIPKEPGPAVWTSMLGACRMHR 474

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
             + GV+V  ++   +    G     L ++YA  G ++   +V
Sbjct: 475 NFDLGVKVAEHVLSVEPENPGHY-VMLSNIYALAGRMDRVEMV 516


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 218/624 (34%), Positives = 316/624 (50%), Gaps = 82/624 (13%)

Query: 89  FTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
            TP +N+  +  LI GLA+N HF + +  F  M R  V PN  T+P   K+VASL L   
Sbjct: 17  LTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVT 76

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI- 206
           G+ +H L VK G   D FV     DMY +      A K+FDE PE+N    +  WN  I 
Sbjct: 77  GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAFIS 132

Query: 207 ----------------------------------NGCSKIGYLRKAVELFGMMPKKNVAS 232
                                             N CS   +L   ++L G++ +    +
Sbjct: 133 NSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDT 192

Query: 233 WVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
            VS    LID + +   ++ +  +F +M  K  VSW +++  + QN E EKA  ++ +  
Sbjct: 193 DVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR 252

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGN 346
              V  +DF + S LSACA +  LE G  +H +   +C +  +   +G+ALVDMY KCG 
Sbjct: 253 KDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTI--FVGSALVDMYGKCGC 310

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY--SGTEPDGTVFLAIL 404
           IE +   F E  EK+L+T  ++I G A  G+ + A+  F++M     G  P+   F+++L
Sbjct: 311 IEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLL 370

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------- 453
           +AC  +G V+  +  FDSMR  Y IEP  +H++ +V++L R G   + Y           
Sbjct: 371 SACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPT 430

Query: 454 -------QNSQNSFTK----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                  QN+     K          L +L PK   ++VLLSN +AA GRW +   VR  
Sbjct: 431 ISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREE 490

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           ++   IKK  G+S+I V   VH F+A    H L KEI + L  +       GY P  +  
Sbjct: 491 LKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLS 550

Query: 555 LHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           L++++EE++ A +  HSEKLALAFGL+       I+I K L ICGDCHS  K+ S   +R
Sbjct: 551 LYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKR 610

Query: 614 EIVLRD-TRFHYFKDGTCSCRDYW 636
           EI++RD  RFH FKDG CSC+DYW
Sbjct: 611 EIIVRDNNRFHRFKDGICSCKDYW 634



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 104/250 (41%), Gaps = 15/250 (6%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H  ++         +   LI      K I  +  IF     KN   +  L+    +N 
Sbjct: 180 QLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNH 239

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +     ++   +  V  +      V  + A ++ L LGR +H   VK+ VE   FV  
Sbjct: 240 EDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGS 299

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
            L DMY + G    + + FDE PEKN    ++  N LI G +  G +  A+ LF      
Sbjct: 300 ALVDMYGKCGCIEDSEQAFDEMPEKN----LVTRNSLIGGYAHQGQVDMALALFEEMAPR 355

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEA 277
           G  P  N  ++VSL+    R G ++   ++F+ M      E G   ++ +++   + G  
Sbjct: 356 GCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMV 415

Query: 278 EKALAMFFQM 287
           E+A     +M
Sbjct: 416 ERAYEFIKKM 425



 Score = 43.5 bits (101), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY+K  + E+A LV   T  +++++WT++I GLA +G +  A+  F +M   G  P+   
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 400 FLAILTA 406
           F     A
Sbjct: 61  FPCAFKA 67


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 209/663 (31%), Positives = 342/663 (51%), Gaps = 76/663 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K L Q++ Q+I+  L     +  + I++      ++YA   F   +  ++ ++N +I+G 
Sbjct: 16  KHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGY 75

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
            + +   + I  ++ M    V PN  T+ +V K+    S+  +G+ +H    K G   + 
Sbjct: 76  TQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNV 135

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV+  L  MY + G+   A  VFD+  ++    +V+ W  +I+G  + G   +A+ +F  
Sbjct: 136 FVQNSLVSMYAKFGQISYARIVFDKLHDR----TVVSWTSIISGYVQNGDPMEALNVFKE 191

Query: 225 MPKKNV-ASWVSLID--------------------------------------GFMRKGD 245
           M + NV   W++L+                                        + ++G 
Sbjct: 192 MRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL 251

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           ++ A   F +M +  ++ W AMI+G++ NG  E+A+ +F +M+   +R +  T+ SA+ A
Sbjct: 252 VEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLA 311

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            A+VG+LE    +  YIS +++     + T L+DMYAKCG+I  A  VF    +KD++ W
Sbjct: 312 SAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLW 371

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           + MI G  +HG  ++AI  + +M  +G  P+   F+ +LTAC  SG VK     F  M  
Sbjct: 372 SVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMP- 430

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQ 457
           D+ IEP  +H++ VV+LL R G  +Q Y                            +  +
Sbjct: 431 DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGE 490

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  +L  L P +   YV LSN+YA+   W  VA VR +M ++ + KD G S IE+NG++
Sbjct: 491 IAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNL 550

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLA 574
             F+ G   H  +KEI  +L+ +    +  GY+P  E VLH++  EE EE L  HSE+LA
Sbjct: 551 ETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLA 610

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCR 633
           +A+G+I T PGTT++I K L  C +CHS +K  SK+  REI++RD  RFH+FKDG CSC 
Sbjct: 611 VAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCG 670

Query: 634 DYW 636
           D+W
Sbjct: 671 DFW 673


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 213/659 (32%), Positives = 327/659 (49%), Gaps = 103/659 (15%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           + I+ A  +FD    ++L  + V+I G AE       +  F  M    V P+++    V 
Sbjct: 207 REIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVV 266

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            + A L  +   R +   I +   + D  +   + DMY + G    A ++FD   EKN  
Sbjct: 267 FACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN-- 324

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK---------------------- 228
             V+ W+ +I      G  RKA++LF      GM+P K                      
Sbjct: 325 --VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQV 382

Query: 229 -----------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE- 276
                      N+     L+  +     L  A  LF+ M  +  VSW+ M+ GF++ G+ 
Sbjct: 383 HAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDY 442

Query: 277 ---------------------------AEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
                                      A ++L +F +M + GV  +   +V+ + ACAK+
Sbjct: 443 MNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKL 502

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           GA+     + +YI    F L   +GTA++DM+AKCG +E+A  +F   +EK++++W+AMI
Sbjct: 503 GAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMI 562

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
                HG+  +A+  F  M+ SG  P+    +++L AC ++G V+  L FF  M  DY +
Sbjct: 563 AAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSV 622

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNSFT 461
              VKH+T VV+LL R G+  +  +                             ++ + T
Sbjct: 623 RADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAAT 682

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
            LL+L+P++P  Y+LLSNIYA  GRW+DVA+ R LM +R +KK PGW++IEV+   H+F 
Sbjct: 683 SLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFS 742

Query: 522 AGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFG 578
            G   H  +KEI+  L+ +       GY+P T +VLH++ EE K   L  HSEKLA+AFG
Sbjct: 743 VGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFG 802

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           LI T   T I+I+K L +CGDCH+  K  S I+ R I++RD  RFH+FK+G CSC DYW
Sbjct: 803 LIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/423 (25%), Positives = 199/423 (47%), Gaps = 26/423 (6%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           +I +L++  N T Q+RQ+HAQ  +H +  +  +  +LI   S ++++D A  +FD    +
Sbjct: 84  YISALVNCRNLT-QVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 142

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +   ++V++ G A+   + +C   F  ++R   RP+  T PFV ++   L  L +   L 
Sbjct: 143 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMA--LV 200

Query: 153 CLIVKSGVEYDA---FVRVHLADM---------YVQLGKTRGAFKVFDETPEKNKSESVL 200
            + VK     DA   F ++   D+         Y + GK   +  +F++  E+      +
Sbjct: 201 DMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKV 260

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQM 256
               ++  C+K+G + KA  +   + +K    +V    ++ID + + G ++ A E+F++M
Sbjct: 261 AMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRM 320

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
            EK V+SW+AMI  +  +G+  KAL +F  ML +G+  +  T+ S L AC     L    
Sbjct: 321 EEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVR 380

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +VH   S +       +   LV  Y+    ++ A  +F     +D ++W+ M+ G A  G
Sbjct: 381 QVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 440

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
            Y      F++++  G  PD            + G    +L  FD MR +  +   V   
Sbjct: 441 DYMNCFGTFRELIRCGARPDNYTLP-------FCGNANESLVLFDKMREEGVVPDKVAMV 493

Query: 437 TVV 439
           TVV
Sbjct: 494 TVV 496



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 150/298 (50%), Gaps = 22/298 (7%)

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
            RL   F   ++ +   L+  R +H      G+  +  V   L   Y        A+ +F
Sbjct: 77  QRLNPKFYISALVNCRNLTQVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLF 136

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV------- 234
           D    ++       W+V++ G +K+G        F      G  P      +V       
Sbjct: 137 DGMCVRDSVS----WSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDL 192

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +L+D +++  +++ A  LF++M E+ +V+WT MI G+++ G+A ++L +F +M +
Sbjct: 193 KNLQMALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 252

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            GV  +   +V+ + ACAK+GA+     + +YI    F L   +GTA++DMYAKCG +E+
Sbjct: 253 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 312

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A  +F   +EK++++W+AMI     HG+  +A+  F+ M+ SG  PD     ++L AC
Sbjct: 313 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYAC 370



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 155/358 (43%), Gaps = 42/358 (11%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           SS    + IT   ++    +  +  Q+RQ+HAQ  +H +  +  +  +L+   S ++++D
Sbjct: 353 SSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALD 412

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            A  +FD    ++   ++V++ G A+   + +C   F  ++R   RP+  T PF   +  
Sbjct: 413 DAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANE 472

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           SL L    R       + GV  D    V +     +LG    A  + D    K     V+
Sbjct: 473 SLVLFDKMR-------EEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVI 525

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           L   +I+  +K G +  A E+F  M +KNV SW ++I  +   G  +KA +LF       
Sbjct: 526 LGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFP------ 579

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
                                     ML +G+  N  T+VS L AC+  G +E G+R  +
Sbjct: 580 -------------------------MMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 614

Query: 321 YISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
            +   D+ ++  +   T +VD+  + G + EA  L+   T EKD   W A +     H
Sbjct: 615 LMW-EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTH 671


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 194/607 (31%), Positives = 327/607 (53%), Gaps = 49/607 (8%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T L+S+ +L    + A ++FD    ++L  + +++  LA  S+ +    HF  M      
Sbjct: 58  TALLSAFALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQM------ 111

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P R    + +   A+     +             E + F    L   Y + G  + A +V
Sbjct: 112 PERDLVAWTAMLAANAERGQMENARETF--DQMPERNLFSWTSLLSAYGRSGDVKAAGRV 169

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           FD  PE N    ++ W  ++ G S  G + +A   F  MP++++ +W +++  +   G L
Sbjct: 170 FDSMPEWN----LVAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHL 225

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-----LDAGVRANDFTVVS 301
           +   E+F++MPE+ ++SW  M+    +N   E++  +F +M     L  G+  N  T ++
Sbjct: 226 RYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFIT 285

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L AC+ +GAL  G ++H  ++   F     +  ALV+ Y +CG +  A +VF   + +D
Sbjct: 286 LLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRD 345

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           +++W++MI   A  GR ++A++ + +M+  GT PD  +F+++L AC  SG V+ + +FF 
Sbjct: 346 VISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFR 405

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY-------------------------- 453
           S+  D  +EP+++H+  +V++L R G+  D++                            
Sbjct: 406 SIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDV 465

Query: 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
           +  + +   + +L P++ S Y+ L+NIY+A  R KD AR+R LM+ R IKK PG S+IEV
Sbjct: 466 ERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEV 525

Query: 514 NGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHS 570
              VH F AG   H    EI+++++ +    +E GY   T+ VL +++E EKE  L  HS
Sbjct: 526 LDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHS 585

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           EKLA+AFGLI T PG  ++IVK L +C DCH+  K  SK++ REI++RDT RFH+F++G 
Sbjct: 586 EKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGM 645

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 646 CSCNDYW 652



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/234 (27%), Positives = 115/234 (49%), Gaps = 12/234 (5%)

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           I  +  + D+F    +  +Y + G    A  VFD  P      S+  W  L++  +  G+
Sbjct: 14  IFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRW----SLGSWTALLSAFALSGH 69

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
             +A  LF  M ++++ +W  ++       +++ A   F+QMPE+ +V+WTAM+   ++ 
Sbjct: 70  HEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAMLAANAER 129

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G+ E A   F QM +     N F+  S LSA  + G ++A  RV +  S  ++ L     
Sbjct: 130 GQMENARETFDQMPE----RNLFSWTSLLSAYGRSGDVKAAGRVFD--SMPEWNL--VAW 181

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           TA++  Y+  G++  A   F    E+DL+ WTAM+   A +G      + F++M
Sbjct: 182 TAMLTGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRM 235



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 111/241 (46%), Gaps = 37/241 (15%)

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           ++G + +A ++F  +  ++  SW  ++  + R GDL  A  +F++MP   + SWTA+++ 
Sbjct: 4   RLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSA 63

Query: 271 FSQNGEAEKALAMFFQMLDAGVRA--------------------------NDFTVVSA-L 303
           F+ +G  E+A  +F  M +  + A                           D    +A L
Sbjct: 64  FALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPERDLVAWTAML 123

Query: 304 SACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           +A A+ G +E      + +   N F       T+L+  Y + G+++AA  VF    E +L
Sbjct: 124 AANAERGQMENARETFDQMPERNLFSW-----TSLLSAYGRSGDVKAAGRVFDSMPEWNL 178

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           + WTAM+ G ++ G   +A + F  M     E D   + A+L+A  ++G ++     F  
Sbjct: 179 VAWTAMLTGYSLSGDVVRAKRAFDSM----PERDLIAWTAMLSAYAFNGHLRYTREIFQR 234

Query: 423 M 423
           M
Sbjct: 235 M 235


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 223/695 (32%), Positives = 342/695 (49%), Gaps = 114/695 (16%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV- 99
           S ST+Q +Q+HA I+        +    L S   L  S+   L++  H    +LH+FN  
Sbjct: 22  SVSTRQAKQLHAHIV--------KTKGTLHSDNILVLSLYSNLNLLQH----SLHLFNSL 69

Query: 100 -----------LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
                      +I+    +S      S F  M  LSV PNR  +P + K+   L    L 
Sbjct: 70  PSPPPPLAWSSIIKCYTSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLA 129

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS------------ 196
             LH   V+ G++ D ++   L + Y    K   A KVFD  P++ +S            
Sbjct: 130 HSLHACTVRLGLDSDLYIANALINTY---AKFHNAGKVFDVFPKRGESGIDCVKKVFDMM 186

Query: 197 --ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-------------------------- 228
               V+ WN +I G ++ G   +A+++   M K                           
Sbjct: 187 PVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKG 246

Query: 229 --------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                         +V    SLID + +   L+ +   F  +P K  +SW ++I G  QN
Sbjct: 247 KEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQN 306

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           GE ++ L  F +ML   V+    +  S + ACA + AL  G ++H  I    F     I 
Sbjct: 307 GEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIA 366

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           ++LVDMYAKCGNI+ A  VF    ++D++ WTA+I G A+HG    A+  F+ M+  G  
Sbjct: 367 SSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVR 426

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY- 453
           P    F+A+LTAC ++G V     +F+SM  D+ I P ++H+  V +LL R G+  + Y 
Sbjct: 427 PCYVAFMAVLTACSHAGLVDEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYD 486

Query: 454 ----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
                                       + ++    KLL +  ++  +YVL+SNIY+A  
Sbjct: 487 FISNMRGVQPTGSVWSILLAACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQ 546

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR 543
           RWKD AR+R  M+++ +KK P  S+IEV   VH F AG   H    +I+  L+ ++    
Sbjct: 547 RWKDAARLRIHMRKKGLKKTPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQME 606

Query: 544 EQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
           ++GY+  T  VLH++ EE K E L  HSE+LA+A+G+I TT GTTI+++K + +C DCH+
Sbjct: 607 KEGYVIDTNQVLHDVDEELKRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHT 666

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +K+ +KI  REI +RD +RFH+FK+G+CSC DYW
Sbjct: 667 AIKFITKIVGREITVRDNSRFHHFKNGSCSCGDYW 701



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 72/304 (23%), Positives = 134/304 (44%), Gaps = 16/304 (5%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP ++ T + I+ +        + ++IH   + +       I + LI   +    ++ +L
Sbjct: 224 KP-DSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSL 282

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
             F     K+   +N +I G  +N  F   +  F  ML+ +V+P  +++  V  + A L+
Sbjct: 283 RAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLT 342

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            LSLGR LH  IV+ G + + F+   L DMY + G  + A  VFD   +++    ++ W 
Sbjct: 343 ALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRD----MVAWT 398

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            +I GC+  G+   AV LF  M +  V     ++++++      G + +    F  M   
Sbjct: 399 AIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSMERD 458

Query: 260 -----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
                G+  + A+ +   + G  E+A      M   GV+         L+AC    ++E 
Sbjct: 459 FGIAPGLEHYAAVADLLGRAGRLEEAYDFISNM--RGVQPTGSVWSILLAACRAHKSVEL 516

Query: 315 GVRV 318
             +V
Sbjct: 517 AEKV 520


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  343 bits (881), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 183/438 (41%), Positives = 259/438 (59%), Gaps = 36/438 (8%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-- 292
           SLI  +   G +  A  LF  MPE+ V+SW+ MING+ + G+ ++ALA+F +M   GV  
Sbjct: 104 SLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVND 163

Query: 293 -RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
            R N+FT+   L+AC ++GALE G   H YI      +   +GTAL+DMYAKCG++E A+
Sbjct: 164 VRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKAT 223

Query: 352 LVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
            VF      KD++ W+AMI GLA+HG  E+ +  F KM+  G  P+   FLA+  AC + 
Sbjct: 224 WVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHG 283

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------- 453
           G V    ++   M  DY I P+++H+  +V+L  R G+  + +                 
Sbjct: 284 GLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGA 343

Query: 454 -----------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                      +  + +  KL++L+P +  +YVLLSN+YA  GRW+DV  VR LM+   I
Sbjct: 344 LLSGSRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGI 403

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK PG S IEV G +H F  G   H   ++IH  LE+I+   + +GY+  T+ VL ++ E
Sbjct: 404 KKVPGCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDE 463

Query: 561 E-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E KE AL  HSEKLALA+G ++T+PGT I+IVK L IC DCH  +K  SK+  REI++RD
Sbjct: 464 EGKELALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRD 523

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH+F  G CSCRDYW
Sbjct: 524 CNRFHHFTQGLCSCRDYW 541



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 177/378 (46%), Gaps = 68/378 (17%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE-----NSHFQSCISHFVF 119
           + T+LISS   H ++ ++    + F      ++N LIR   +          S IS FV 
Sbjct: 3   LPTRLISST--HPTLHFSHPTLESF------LWNTLIRAHVQARAQPTGPTHSPISIFVR 54

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M    V+P+  T+PF+ +S AS SLL LGR +H  I++ G+  D FV+  L  MY   G 
Sbjct: 55  MRFHGVQPDFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGL 114

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---------PKKNV 230
              A  +F   PE+N    V+ W+ +ING  + G  ++A+ LF  M         P +  
Sbjct: 115 VDMARNLFAVMPERN----VISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFT 170

Query: 231 ASWV---------------------------------SLIDGFMRKGDLKKAGELFEQM- 256
            S V                                 +LID + + G ++KA  +F  + 
Sbjct: 171 MSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLG 230

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           P K V++W+AMI+G + +G AE+ + +F +M++ GVR N  T ++   AC   G +  G 
Sbjct: 231 PNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEG- 289

Query: 317 RVHNYIS--CNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWG 371
              +Y+     D+ +   I     +VD+Y + G I EA ++V     E D+L W A++ G
Sbjct: 290 --KDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSG 347

Query: 372 LAIHGRYEQAIQYFKKMM 389
             +HG  E      KK++
Sbjct: 348 SRMHGDIETCELALKKLI 365



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/278 (24%), Positives = 113/278 (40%), Gaps = 53/278 (19%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +HAQI+   L     + T LIS  S    +D A ++F     +N+  ++ +I G    
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRC 143

Query: 108 SHFQSCISHFVFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             ++  ++ F  M  L    VRPN  T   V  +   L  L  G+  H  I K G+  D 
Sbjct: 144 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDV 203

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDET-PEKNKSESVLLWNVLINGCSKIG---------- 213
            +   L DMY + G    A  VF    P K+    V+ W+ +I+G +  G          
Sbjct: 204 VLGTALIDMYAKCGSVEKATWVFSNLGPNKD----VMAWSAMISGLAMHGLAEECVGLFS 259

Query: 214 --------------------------------YLRKAVELFGMMPKKNVASWVSLIDGFM 241
                                           YLR+  E + ++P   +  +  ++D + 
Sbjct: 260 KMINQGVRPNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIP--TIQHYGCMVDLYG 317

Query: 242 RKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAE 278
           R G +K+A  + + MP E  V+ W A+++G   +G+ E
Sbjct: 318 RAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 355



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 264 WTAMINGFSQ-----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           W  +I    Q      G     +++F +M   GV+ +  T    L + A    L  G  V
Sbjct: 27  WNTLIRAHVQARAQPTGPTHSPISIFVRMRFHGVQPDFHTFPFLLQSFASPSLLHLGRSV 86

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H  I      +   + T+L+ MY+  G ++ A  +F    E+++++W+ MI G    G+Y
Sbjct: 87  HAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRCGQY 146

Query: 379 EQAIQYFKKMMYSG---TEPDGTVFLAILTACWYSGQVK 414
           ++A+  F++M   G     P+      +L AC   G ++
Sbjct: 147 KEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALE 185


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 351/653 (53%), Gaps = 51/653 (7%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP++      +++L   S      R++  ++   + F+ + + + L + + L + +    
Sbjct: 54  KPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLS-LYAKSGLVEDLRV-- 110

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            IFD+   ++   +N +I G A N      +  F+ M +  ++P   T+  V  +   L 
Sbjct: 111 -IFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLL 169

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L  G+ +H  I+   +  + FV   L D+Y + G+   A ++FD    +N    V+ WN
Sbjct: 170 DLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRN----VVTWN 225

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
           ++I+G  K     K ++LF  M   N+     +  S++  +++ G + +A ++F ++ EK
Sbjct: 226 LMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREK 285

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
             V WT MI G +QNG+ E AL +F +ML    R + +T+ S +S+CAK+ +L  G  VH
Sbjct: 286 DEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVH 345

Query: 320 N---YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
                +  ND  L   + +ALVDMY KCG    A  +F   + +++++W +MI G A++G
Sbjct: 346 GKAFLMGVNDDLL---VSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNG 402

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           +  +A+  ++ M+    +PD   F+ +L+AC ++G V+    +F SM   + +EP+  H+
Sbjct: 403 QDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHY 462

Query: 437 TVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKP 468
             +VNL  R G   +                              ++ + +   L++L P
Sbjct: 463 ACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNP 522

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HK 526
            +   Y++LSN+YAA GRWKDVA +R+LM+ + +KK   +S+IE++  VH+F A    H 
Sbjct: 523 FNAVPYIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHP 582

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPG 585
            AK IH +L  ++   +E G+ P T  VLH+  E EK E++  HSEKLALA+GLI+   G
Sbjct: 583 DAKIIHVQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHG 642

Query: 586 TT-IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            T I+I+K +  C DCH  MK+ S I++R ++LRD+ RFH+F +G CSC+DYW
Sbjct: 643 VTPIRIIKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 330/629 (52%), Gaps = 69/629 (10%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
            S   +R +HA+I+   L         L+S+ +  + +  AL +FD    ++++I++ L+
Sbjct: 17  GSPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLL 76

Query: 102 RGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
             ++ ++  +  +     ML   ++ P+      V+   A L    LGR LH   V S  
Sbjct: 77  TAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPY 136

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             D  V+  L DMY + G      KVFD                                
Sbjct: 137 NGDDVVKSSLVDMYCKCGSPDDGRKVFDS------------------------------- 165

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
               M  KN   W +L+ G+   G  ++A +LF  MP + + +WTA+I+G    GE+  A
Sbjct: 166 ----MSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGA 221

Query: 281 LAMFFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           + +F +M   GVR +D  V+S  +   A + A   G ++H       F     +G AL+D
Sbjct: 222 VELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALID 281

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY+KC +I +A  VF     +D+++WT M+ G A HGR E+A+  + +M+ +G +P+   
Sbjct: 282 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 341

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQ 451
           F+ ++ AC ++G V+     F+SM+ +Y I P ++H+T  ++LLSR G          + 
Sbjct: 342 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 401

Query: 452 GYQNSQNSF--------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
            Y+  + ++                     KLL+L+PK  S+Y+LLSN+YA  G+W  VA
Sbjct: 402 PYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVA 461

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKL--AKEIHSKLEDIMAGAREQGYMP 549
           +VR  M    I+K+PG+S+IE       F AG   L   +EI   LE+++   R++GY+P
Sbjct: 462 KVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVP 521

Query: 550 GTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T  V+H+++E EKE  L  HSE+LA+AFGLI++ PG+ I++VK L +C DCH++MK  S
Sbjct: 522 DTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLIS 581

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +I+ R+IV+RD +RFH+F+ G CSC ++W
Sbjct: 582 EITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  343 bits (880), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 198/602 (32%), Positives = 315/602 (52%), Gaps = 63/602 (10%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +I+    +  +D A    D  T K +  +N +I G   +  F   +  F  M  L ++
Sbjct: 229 TTMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQ 288

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            +  TY  V  + A+      G+ +H  I+++                    + R +   
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRT--------------------EPRPSL-- 326

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
            D +   N + + L W        K G + +A ++F  MP K++ SW +++ G++  G +
Sbjct: 327 -DFSLSVNNALATLYW--------KCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRI 377

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            +A   FE+MPE+ +++WT MI+G +QNG  E++L +F +M   G    D+    A+ AC
Sbjct: 378 DEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIAC 437

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A + AL  G ++H  +    F    + G AL+ MYAKCG +EAA  +F      D ++W 
Sbjct: 438 AWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWN 497

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI  L  HG   QA++ F+ M+     PD   FL +L+ C ++G V+    +F SM   
Sbjct: 498 AMIAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGL 557

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ----------------------------N 458
           Y I P   H+  +++LL R G+ S+     +                             
Sbjct: 558 YGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQ 617

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  +L +L P+H  +YVLLSN+YA  GRW DVA+VR LM+ + +KK+PG S+IEV   VH
Sbjct: 618 AAERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVH 677

Query: 519 RFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLAL 575
            F      H   + +++ LE++    R+ GY+P T++VLH+++ E+KE  L  HSEKLA+
Sbjct: 678 VFLVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAV 737

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
            FGL++   G T+++ K L ICGDCH+  K+ SK+ +REIV+RD  RFH+FK+G CSC +
Sbjct: 738 GFGLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGN 797

Query: 635 YW 636
           YW
Sbjct: 798 YW 799



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 114/459 (24%), Positives = 185/459 (40%), Gaps = 123/459 (26%)

Query: 2   KGHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA 61
           +G++ NRL      ++++ S+H   + I +  I++                         
Sbjct: 49  RGYILNRLIDVYCKSSDLVSAHHLFDEIRQPDIVA------------------------- 83

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFV 118
                T LI++ S   + + A  IF   TP   ++   +N +I G + N+     I  F 
Sbjct: 84  ----RTTLIAAHSSAGNSNLAREIF-FATPLGIRDTVCYNAMITGYSHNNDGFGAIELFR 138

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLL----SLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
            +LR   RP+  T+  V   + +L+L+       + +HC +VKSG  +   V   L  ++
Sbjct: 139 DLLRNGFRPDNFTFTSV---LGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVF 195

Query: 175 VQLGKTR---------GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V+   +           A K+FDE  E+++    L W  +I G  + G L  A +    M
Sbjct: 196 VKCASSPLVSSSSLMAAARKLFDEMTERDE----LSWTTMIAGYVRNGELDAARQFLDGM 251

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
            +K V +W ++I G++  G                                  +AL MF 
Sbjct: 252 TEKLVVAWNAMISGYVHHGFFL-------------------------------EALEMFR 280

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI------SCNDFGLKGAIGTALVD 339
           +M   G++ ++FT  S LSACA  G    G +VH YI         DF L  ++  AL  
Sbjct: 281 KMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSL--SVNNALAT 338

Query: 340 MYAKCGNIEAASLVFG-------------------------------ETKEKDLLTWTAM 368
           +Y KCG ++ A  VF                                E  E++LLTWT M
Sbjct: 339 LYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVM 398

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I GLA +G  E++++ F +M   G EP    F   + AC
Sbjct: 399 ISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIAC 437



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 34/335 (10%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--KG 260
           N LI+   K   L  A  LF  + + ++ +  +LI      G+   A E+F   P   + 
Sbjct: 54  NRLIDVYCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRD 113

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV-RVH 319
            V + AMI G+S N +   A+ +F  +L  G R ++FT  S L A A +   E    ++H
Sbjct: 114 TVCYNAMITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIH 173

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCG---------NIEAASLVFGETKEKDLLTWTAMIW 370
             +  +  G   ++  AL+ ++ KC           + AA  +F E  E+D L+WT MI 
Sbjct: 174 CAVVKSGSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIA 233

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM-----RF 425
           G   +G  + A Q+   M    TE     + A+++   + G    AL  F  M     ++
Sbjct: 234 GYVRNGELDAARQFLDGM----TEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW 289

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
           D F       +T V++  +  G    G Q        +L+ +P+    + L  N   A  
Sbjct: 290 DEFT------YTSVLSACANAGFFLHGKQ----VHAYILRTEPRPSLDFSLSVNNALATL 339

Query: 486 RWK--DVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
            WK   V   R +  +  +K    W+ I ++G+V+
Sbjct: 340 YWKCGKVDEARQVFNQMPVKDLVSWNAI-LSGYVN 373


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 191/481 (39%), Positives = 277/481 (57%), Gaps = 37/481 (7%)

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLK 247
           EK K E+  +WN  +   ++      A+ LF  + + +V     +  S++   +   DL 
Sbjct: 120 EKQKPET-FVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFTCSSVLRACLNLLDLS 178

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
               L   + + G  SWT+MI G+ Q G+A++A+ +F +M +AGV+ N+ TVV+ L+ACA
Sbjct: 179 NGRILHGVVEKVGFRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACA 238

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            +GAL+ G+R+H Y + + F     I   L+DMY KCG +E A  VF E +E+ +++W+A
Sbjct: 239 DLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSA 298

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           MI GLA+HGR E+A++ F  M   G EP+G  F+ +L AC + G +     FF SM  DY
Sbjct: 299 MIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDY 358

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQ----------------------------NSQNS 459
            I P ++H+  +V+LLSR G   + ++                             ++ +
Sbjct: 359 GIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEA 418

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
              LL+L P +   YV+LSNIYA  GRW+D ARVR  M+ R +KK PGWS I V+G VH 
Sbjct: 419 IKHLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHE 478

Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALA 576
           F AG   H   ++I  + E+++   R +GY+P T  VL +I+E EK + +  HSEKLAL 
Sbjct: 479 FVAGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALV 538

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           FGL+ T   T I+I+K L IC DCHS  K  S I  REIV+RD  RFH F D +CSCRDY
Sbjct: 539 FGLMNTPAETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDY 598

Query: 636 W 636
           W
Sbjct: 599 W 599



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 184/393 (46%), Gaps = 16/393 (4%)

Query: 14  APTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           +P  N   + KP +  +ET  I L+ + NS  +LRQ+HAQII  N   S    T++    
Sbjct: 46  SPNRNQIHNVKPQS--SETLKIDLLRNFNSPFELRQVHAQIIKTNAPLSILPLTRVGLVC 103

Query: 74  SLHKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           +   S  YA  IF     +    F  N  ++ LAE       I  F  + +  V P+  T
Sbjct: 104 AFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQYDVCPDTFT 163

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
              V ++  +L  LS GR LH ++ K G          +   YVQ GK + A  +F +  
Sbjct: 164 CSSVLRACLNLLDLSNGRILHGVVEKVGFRS----WTSMIAGYVQCGKAKEAIHLFAKME 219

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLK 247
           E     + +    ++  C+ +G L   + +         K+NV    +LID +++ G L+
Sbjct: 220 EAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLE 279

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A ++FE+M E+ VVSW+AMI G + +G AE+AL +F  M   G+  N  T +  L AC+
Sbjct: 280 EACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACS 339

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
            +G +  G R    ++  D+G+   I     +VD+ ++ G + EA   +     + + + 
Sbjct: 340 HMGLISEGRRFFASMT-RDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVV 398

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           W A++    +H   E A +  K ++      DG
Sbjct: 399 WGALLGACRVHKNVEMAEEAIKHLLELDPLNDG 431



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 132/336 (39%), Gaps = 51/336 (15%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +I G  +    +  I  F  M    V+ N +T   V  + A L  L LG  +H    + G
Sbjct: 198 MIAGYVQCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHG 257

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
            + +  +   L DMYV+ G    A KVF+E  E+    +V+ W+ +I G +  G   +A+
Sbjct: 258 FKRNVRISNTLIDMYVKCGCLEEACKVFEEMEER----TVVSWSAMIGGLAMHGRAEEAL 313

Query: 220 ELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVS----WTAMING 270
            LF  M +     N  +++ L+      G + +    F  M  + G++     +  M++ 
Sbjct: 314 RLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDL 373

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            S+ G   +A      M    ++ N     + L AC          RVH  +   +  +K
Sbjct: 374 LSRAGLLHEAHEFILNM---PMKPNGVVWGALLGAC----------RVHKNVEMAEEAIK 420

Query: 331 GAIG---------TALVDMYAKCGNIEAASLVFGETKEKDLLT---WTAM---------I 369
             +            L ++YA+ G  E  + V    K++ +     W+++         +
Sbjct: 421 HLLELDPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFV 480

Query: 370 WGLAIHGRYEQAIQ----YFKKMMYSGTEPDGTVFL 401
            G   H   EQ  Q      ++M   G  P+ +V L
Sbjct: 481 AGEESHPDTEQIFQRWEELLEEMRLKGYVPNTSVVL 516


>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
          Length = 686

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 197/572 (34%), Positives = 308/572 (53%), Gaps = 62/572 (10%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           + S  ++KQ+ QI AQII +    +  IT +L++  +  K + YA  +FD     N+ ++
Sbjct: 108 MRSCKTSKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPDPNIALW 167

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N + RG A++  ++  +  F  M  + +RPN  T+P V KS   ++ L  G  +HC ++K
Sbjct: 168 NSMFRGYAQSESYREVVFLFFQMKGMDIRPNCFTFPVVLKSCGKINALIEGEQVHCFLIK 227

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------------- 194
            G   + FV   L DMY   G    A+K+F E  E+N                       
Sbjct: 228 CGFRGNPFVGTTLIDMYSAGGTVGDAYKIFCEMFERNVVAWTSMINGYILSADLVSARRL 287

Query: 195 ----KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                   V+LWN++++G  + G + +A +LF  MP ++V  W +++ G+   G+++   
Sbjct: 288 FDLAPERDVVLWNIMVSGYIEGGDMVEARKLFXEMPNRDVMFWNTVLKGYATNGNVEALE 347

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKV 309
            LFE+MPE+ + SW A+I G++ NG   + L  F +ML ++ V  ND T+V+ LSACA++
Sbjct: 348 GLFEEMPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARL 407

Query: 310 GALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           GAL+ G  VH Y   +  GLKG +  G AL+DMYAKCG IE A  VF     KDL++W  
Sbjct: 408 GALDLGKWVHVYAESS--GLKGNVYVGNALMDMYAKCGIIENAISVFRGMDTKDLISWNT 465

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           +I GLA+H R   A+  F +M  +G +PDG  F+ IL AC + G V+    +F SM  DY
Sbjct: 466 LIGGLAMHSRGADALNLFFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDY 525

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQNS 459
            I P ++H+  +V++L+R G+  Q                          Y+N   ++ +
Sbjct: 526 LIMPQIEHYGCMVDMLARAGRLEQAXAFVRKMPVEADGVIWAGLLGACRIYKNVELAELA 585

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
             +L++L+PK+P++YV+LSNIY   GRW+DVAR++  M+    KK PG S IEVN  V  
Sbjct: 586 LQRLIELEPKNPANYVMLSNIYGDAGRWEDVARLKVAMRDTGFKKLPGCSLIEVNDAVVE 645

Query: 520 FEA--GGHKLAKEIHSKLEDIMAGAREQGYMP 549
           F +    H   +EI+  L  ++   R  GY+P
Sbjct: 646 FYSLDERHPQIEEIYGVLRGLVKVLRSFGYVP 677


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 203/592 (34%), Positives = 309/592 (52%), Gaps = 70/592 (11%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           +ID A  +FD    +NL ++N ++   A     +  ++    ML+   RP+R+T      
Sbjct: 282 AIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAIS 341

Query: 138 SVASLSLLSLGRGLHCLIVKSGVE-YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           + A L  L  G+  H  ++++G+E +D+   V + DMY++ GK           PE    
Sbjct: 342 ASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNV-IIDMYMKCGK-----------PEM--- 386

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                                A  +F +M  K V SW SL  GF+R GD++ A E+F Q+
Sbjct: 387 ---------------------ACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQI 425

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           PE+  V W  MI+G  Q    E A+ +F +M   G++A+  T++   SAC  +GA E   
Sbjct: 426 PERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK 485

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
            VH YI  N       + TALVDM+A+CG+ ++A  VF +  E+D+  WTA I  +A+ G
Sbjct: 486 WVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEG 545

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             E A   F +M+  G +PD  +F+ +LTAC + GQV+  L+ F  M  D+ I P ++H+
Sbjct: 546 NGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHY 604

Query: 437 TVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKP 468
             +V+LL R G   + +                            + +  +  ++ +L P
Sbjct: 605 GCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAP 664

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHK 526
           +    +VLLSNIYA+ G+W DVARVR  ++ + ++K PG S ++VNG +H F +G   H 
Sbjct: 665 QRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHP 724

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPG 585
               I   L+++     + G++P    VL ++ E EKE  L  HSEKLA+AFGLI T   
Sbjct: 725 EMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRS 784

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             I++VK L +C DCHS  K AS I  REI++RD  RFH+F+ G CSC DYW
Sbjct: 785 MPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 139/548 (25%), Positives = 244/548 (44%), Gaps = 94/548 (17%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS---LHKSIDYALSIFDHF----- 89
           +    +  QL+Q+H QI  + L       T+L+++ +     +S+DYA   F+ F     
Sbjct: 32  LRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVR 91

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           +   L + N LIRG +     +  I  +V ML L V PN  T+PFV      ++    G 
Sbjct: 92  SDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCEGI 151

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  +VK G+E D F++  L   Y + G      KVF+   E+N    V+ W  LI G 
Sbjct: 152 QVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERN----VVSWTSLICGY 207

Query: 210 SKIGYLRKAVELF------GMMPK--------------------KNVASWV--------- 234
           ++    ++AV LF      G+ P                     + V +++         
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267

Query: 235 ----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
               +L+D +M+ G +  A  LF++  ++ +V +  +++ +++ G A +ALA+  +ML  
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKC---- 344
           G R +  T++SA+SA A++  L  G   H Y+  N  GL+G  +IG  ++DMY KC    
Sbjct: 328 GPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRN--GLEGWDSIGNVIIDMYMKCGKPE 385

Query: 345 ---------------------------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
                                      G++E+A  VF +  E++ + W  MI GL     
Sbjct: 386 MACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSL 445

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
           +E AI+ F++M   G + D    + I +AC Y G  +LA  +  +      I   ++ +T
Sbjct: 446 FEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA-KWVHTYIEKNGIPCDMRLNT 504

Query: 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
            +V++ +R G      Q++   F K+ +   +  S++       A EG  +    +   M
Sbjct: 505 ALVDMFARCGDP----QSAMQVFNKMTE---RDVSAWTAAIGTMAMEGNGEGATGLFNQM 557

Query: 498 QRRSIKKD 505
             + +K D
Sbjct: 558 LIQGVKPD 565



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 153/315 (48%), Gaps = 43/315 (13%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK------TRGAFKVFD 188
           +++S+     L+  + LHC I K+G++        L +   ++         R AF++F 
Sbjct: 28  LNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFK 87

Query: 189 ETPEKNKS------------------ESVLLW---------------NVLINGCSKIGYL 215
           E    + +                  E++LL+                 +++GC+KI   
Sbjct: 88  EDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAF 147

Query: 216 RKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
            + +++ G + K  +   V     LI  +   G +    ++FE M E+ VVSWT++I G+
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           ++    ++A+++FF+M++AG+R +  T+V  +SACAK+  L+ G RV  YI      L  
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNK 267

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +  ALVDMY KCG I+AA  +F E  +++L+ +  ++   A  G   +A+    +M+  
Sbjct: 268 VMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQ 327

Query: 392 GTEPDGTVFLAILTA 406
           G  PD    L+ ++A
Sbjct: 328 GPRPDRVTMLSAISA 342


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 202/629 (32%), Positives = 330/629 (52%), Gaps = 69/629 (10%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
            S   +R +HA+I+   L         L+S+ +  + +  AL +FD    ++++I++ L+
Sbjct: 99  GSPAAVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLL 158

Query: 102 RGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
             ++ ++  +  +     ML   ++ P+      V+   A L    LGR LH   V S  
Sbjct: 159 TAVSHSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPY 218

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             D  V+  L DMY + G      KVFD                                
Sbjct: 219 NGDDVVKSSLVDMYCKCGSPDDGRKVFDS------------------------------- 247

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
               M  KN   W +L+ G+   G  ++A +LF  MP + + +WTA+I+G    GE+  A
Sbjct: 248 ----MSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGA 303

Query: 281 LAMFFQMLDAGVRANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           + +F +M   GVR +D  V+S  +   A + A   G ++H       F     +G AL+D
Sbjct: 304 VELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALID 363

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY+KC +I +A  VF     +D+++WT M+ G A HGR E+A+  + +M+ +G +P+   
Sbjct: 364 MYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYDRMVLAGAKPNEVT 423

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQ 451
           F+ ++ AC ++G V+     F+SM+ +Y I P ++H+T  ++LLSR G          + 
Sbjct: 424 FVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRSGHLLEAEELMTTM 483

Query: 452 GYQNSQNSF--------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
            Y+  + ++                     KLL+L+PK  S+Y+LLSN+YA  G+W  VA
Sbjct: 484 PYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLSNVYAVNGKWDSVA 543

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKL--AKEIHSKLEDIMAGAREQGYMP 549
           +VR  M    I+K+PG+S+IE       F AG   L   +EI   LE+++   R++GY+P
Sbjct: 544 KVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLEEMVLEMRKRGYVP 603

Query: 550 GTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T  V+H+++E EKE  L  HSE+LA+AFGLI++ PG+ I++VK L +C DCH++MK  S
Sbjct: 604 DTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVCVDCHTVMKLIS 663

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +I+ R+IV+RD +RFH+F+ G CSC ++W
Sbjct: 664 EITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 210/676 (31%), Positives = 333/676 (49%), Gaps = 80/676 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLH 95
           L+ ++       Q+HA  +   L       +  +  A L    +  A   FD    +++ 
Sbjct: 77  LLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVP 136

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
            +N ++ GL  N+     +  F  M+   V  + +T   V      L   +L   +H   
Sbjct: 137 AWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYA 196

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           VK G++ + FV   + D+Y +LG      KVFD       S  ++ WN +I+G  + G +
Sbjct: 197 VKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGM----SSRDLVTWNSIISGHEQGGQV 252

Query: 216 RKAVELFGMMPKKNVASWV----------------------------------------S 235
             AVE+F  M    V+  V                                        +
Sbjct: 253 ASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNA 312

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRA 294
           ++D + +   ++ A  +F+ MP +  VSW  +I G+ QNG A +A+ ++  M    G++ 
Sbjct: 313 IVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKP 372

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
              T VS L A + +GAL+ G R+H         L   +GT ++D+YAKCG ++ A L+F
Sbjct: 373 IQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLF 432

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            +T  +    W A+I G+ +HG   +A+  F +M   G  PD   F+++L AC ++G V 
Sbjct: 433 EQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVD 492

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------ 462
              NFF+ M+  Y I+P  KH+  +V++  R GQ    +   +N   K            
Sbjct: 493 QGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGA 552

Query: 463 ----------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                           L +L PK+   YVL+SN+YA  G+W  V  VR+L++R++++K P
Sbjct: 553 CRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTP 612

Query: 507 GWSYIEVNGHVHRFEAGG----HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-E 561
           GWS IEV   V+ F +G     H   +EI  +L D++A  R  GY+P   +VL +++E E
Sbjct: 613 GWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDE 672

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           KE+ L  HSE+LA+AFG+I T P T + I K L +CGDCH+  KY SKI++REI++RD+ 
Sbjct: 673 KEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSN 732

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FKDG CSC D+W
Sbjct: 733 RFHHFKDGYCSCGDFW 748


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 215/680 (31%), Positives = 344/680 (50%), Gaps = 84/680 (12%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFD 87
           T+++ L   ++  K+ ++IH  +I      NLFA     T +++  +  + I+ A ++FD
Sbjct: 34  TYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFA----MTGVVNMYAKCRQINDAYNMFD 89

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               ++L  +N +I G A+N   +  +   + M     RP+ +T   +  +VA   LL +
Sbjct: 90  RMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRI 149

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G  +H  ++++G E    V   L DMY + G    A  +FD    +    +V+ WN +I+
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHR----TVVSWNSMID 205

Query: 208 GCSKIGYLRKAVELF------GMMP---------------------------------KK 228
           G  + G    A+ +F      G+ P                                   
Sbjct: 206 GYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDS 265

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V+   SLI  + +   +  A ++F+ +  K +VSW AMI G++QNG   +AL  F +M 
Sbjct: 266 DVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQ 325

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
              ++ + FT+VS + A A++        +H  +          + TALVDMYAKCG I 
Sbjct: 326 SRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIH 385

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  +F     + ++TW AMI G   HG  + +++ FK+M     +P+   FL  L+AC 
Sbjct: 386 TARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACS 445

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------ 462
           +SG V+  L FF+SM+ DY IEP++ H+  +V+LL R G+ +Q +   Q    K      
Sbjct: 446 HSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVY 505

Query: 463 ----------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                                 + +L P     +VLL+NIYA    W  VA+VRT+M++ 
Sbjct: 506 GAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKS 565

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            ++K PG S +E+   VH F +G   H  +K+I+S LE ++   R  GY+P T  + H++
Sbjct: 566 GLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSI-HDV 624

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +++ K + L  HSEKLA+AFGL+ T+ GT I I K L +CGDCH+  KY S ++ REI++
Sbjct: 625 EDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIV 684

Query: 618 RDT-RFHYFKDGTCSCRDYW 636
           RD  RFH FKDG CSC DYW
Sbjct: 685 RDMHRFHLFKDGVCSCGDYW 704



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 171/346 (49%), Gaps = 43/346 (12%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +++G A++S   S +S F  M   SVRP    + ++ K     S L  G+ +H  ++ SG
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY----- 214
             ++ F    + +MY +  +   A+ +FD  PE++    ++ WN +I+G ++ G+     
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERD----LVCWNTMISGYAQNGFAKVAL 116

Query: 215 ------------------------------LRKAVELFGMMPKKNVASWV----SLIDGF 240
                                         LR  + + G + +    S V    +L+D +
Sbjct: 117 MLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMY 176

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + G +  A  +F+ M  + VVSW +MI+G+ Q+G+AE A+ +F +MLD GV+  + TV+
Sbjct: 177 SKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVM 236

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
            AL ACA +G LE G  VH  +         ++  +L+ MY+KC  ++ A+ +F   + K
Sbjct: 237 GALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            L++W AMI G A +G   +A+  F +M     +PD    ++++ A
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 150/339 (44%), Gaps = 18/339 (5%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----N 229
           Y +      A   F      +    V  +  L+  C     L++  E+ G +       N
Sbjct: 5   YAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWN 64

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           + +   +++ + +   +  A  +F++MPE+ +V W  MI+G++QNG A+ AL +  +M +
Sbjct: 65  LFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSE 124

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G R +  T+VS L A A    L  G+ VH Y+    F     + TALVDMY+KCG++  
Sbjct: 125 EGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSI 184

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A ++F     + +++W +MI G    G  E A+  F+KM+  G +P     +  L AC  
Sbjct: 185 ARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACAD 244

Query: 410 SGQV---KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466
            G +   K      D ++ D  +         V+N L  +    +    + + F     L
Sbjct: 245 LGDLERGKFVHKLVDQLKLDSDVS--------VMNSLISMYSKCKRVDIAADIFK---NL 293

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           + K   S+  +   YA  G   +       MQ R+IK D
Sbjct: 294 RNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPD 332



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/263 (24%), Positives = 117/263 (44%), Gaps = 16/263 (6%)

Query: 30  TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           T   ++  +H+      L +   +H  +    L +   +   LIS  S  K +D A  IF
Sbjct: 231 TNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIF 290

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            +   K L  +N +I G A+N      ++ F  M   +++P+  T   V  ++A LS+  
Sbjct: 291 KNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPR 350

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             + +H L+++  ++ + FV   L DMY + G    A K+FD    ++    V+ WN +I
Sbjct: 351 QAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARH----VITWNAMI 406

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP----- 257
           +G    G  + +VELF  M     K N  +++  +      G +++    FE M      
Sbjct: 407 DGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGI 466

Query: 258 EKGVVSWTAMINGFSQNGEAEKA 280
           E  +  + AM++   + G   +A
Sbjct: 467 EPTMDHYGAMVDLLGRAGRLNQA 489


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 291/543 (53%), Gaps = 72/543 (13%)

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
            V Y+  +  H A      G  RGA  +F   P   ++  V  WN +++G S+ G + +A
Sbjct: 82  AVSYNTLLSCHFA-----AGDVRGARDLFAAMPATARN--VTSWNTMLSGLSRSGAVGEA 134

Query: 219 VELFGMMP--------------------------------KKNVASWVSLIDGFMRKGDL 246
             +F  MP                                K+N   W +++ G+M  G +
Sbjct: 135 RAVFLAMPARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENAVLWTAMVSGYMDSGHV 194

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSA 305
           +KA + FE MP + +VSW A++ G+ +N  AE AL +F  M+ DA VR N+ T+ S L  
Sbjct: 195 EKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRPNESTLSSVLLG 254

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+ + AL  G +VH + +      +   GT+LV MY KCG+++ A  +F E + +D++ W
Sbjct: 255 CSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAW 314

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI G A HG   +AI+ F+KM   G EP+   F+A+LTAC ++G     +  F+ M+ 
Sbjct: 315 NAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIHTGMCDFGMQCFERMQE 374

Query: 426 DYFIEPSVKHHTVVVNLLSRVG-------------------------QDSQGYQN---SQ 457
            Y IE  V H++ +V+LL R G                           S+ Y+N   ++
Sbjct: 375 VYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYGTLLNASRVYKNMEFAE 434

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  KL++  P++  +YV L+NIYA   +W DV+RVR  M+  ++ K PG+S++E+NG +
Sbjct: 435 FAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNAVVKTPGYSWVEINGVI 494

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F +    H     IH +L  +    +  GY+P  ++ LH++ E  K + L  HSEKLA
Sbjct: 495 HVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVDESLKVQMLMRHSEKLA 554

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           +AFGL+ T PG T++I K L +CGDCH+  K  SKI  REI+LRD TRFH+F+ G CSC 
Sbjct: 555 IAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILRDTTRFHHFRSGHCSCG 614

Query: 634 DYW 636
           DYW
Sbjct: 615 DYW 617



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 105/231 (45%), Gaps = 14/231 (6%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSV 125
           T ++S       ++ A+  F+    ++L  +N ++ G  +NS  +  +  F  M+R   V
Sbjct: 182 TAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADV 241

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           RPN  T   V    ++LS L  GR +H    K  +         L  MY + G   GA K
Sbjct: 242 RPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACK 301

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFM 241
           +F E     +   V+ WN +I+G +  G  R+A+ELF  M  + V     ++V+++   +
Sbjct: 302 LFSEM----RIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACI 357

Query: 242 RKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
             G      + FE+M      E  V  ++ M++   + G  E+A+++   M
Sbjct: 358 HTGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSM 408



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 24/252 (9%)

Query: 170 LADMYVQLGKTRGAFK---VFDETPEKNKSESVLLWNVLINGCSKIG--------YLRKA 218
           LA   ++ G   GA +   V   TP++  +     +N L+ G ++           L  A
Sbjct: 14  LATAAIRRGDLAGAAEPEAVASTTPQRKTTAD---YNRLLAGYARAARPGGRRDRLLADA 70

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGE 276
             LF  +P+ +  S+ +L+      GD++ A +LF  MP   + V SW  M++G S++G 
Sbjct: 71  RHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGLSRSGA 130

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
             +A A+F  M       N  +  + +S  A  G + A           +      + TA
Sbjct: 131 VGEARAVFLAM----PARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKE---NAVLWTA 183

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEP 395
           +V  Y   G++E A   F     + L++W A++ G   + R E A+  FK M+      P
Sbjct: 184 MVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDADVRP 243

Query: 396 DGTVFLAILTAC 407
           + +   ++L  C
Sbjct: 244 NESTLSSVLLGC 255


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 212/657 (32%), Positives = 341/657 (51%), Gaps = 72/657 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H  ++ + L  +  ++  LI+      ++  A  +FD    K++  +N +I G A N 
Sbjct: 219 QVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANG 278

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                +  F  M    VR +  ++  + K  A+L  L     LHC +VK G  +D  +R 
Sbjct: 279 LDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRT 338

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L   Y +      A ++F ET       +V+ W  +I+G  +     +AV LF  M +K
Sbjct: 339 ALMVAYSKCMAMLDALRLFKETGFLG---NVVSWTAMISGFLQNDGKEEAVGLFSEMKRK 395

Query: 229 NV---------------------------------ASWV--SLIDGFMRKGDLKKAGELF 253
            V                                 +S V  +L+D +++ G + +A ++F
Sbjct: 396 GVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVF 455

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-L 312
             +  K +V+W+AM+ G++Q GE E A+ +F ++   GV+ N+FT  S L+ CA   A +
Sbjct: 456 SGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASM 515

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
             G + H +   +       + +AL+ MYAK G+IE+A  VF   +EKDL++W +MI G 
Sbjct: 516 GQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGY 575

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A HG+  +A+  FK+M     + D   F+ +  AC ++G V+    +FD M  D  I P+
Sbjct: 576 AQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPT 635

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLL 464
            +H++ +V+L SR GQ  +  +   N                            +  K++
Sbjct: 636 KEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKII 695

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
            + P+  ++YVLLSN+YA  G W++ A+VR LM  R++KK+PG+S+IEV    + F AG 
Sbjct: 696 AMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGD 755

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQ 581
             H L  +I+ KLED+    ++ GY P T +VL +I +E KE  L  HSE+LA+AFGLI 
Sbjct: 756 RSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIA 815

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF-KDGTCSCRDYW 636
           T  G+ + I+K L +CGDCH ++K  +KI +REIV+RD+ RFH+F  DG CSC D+W
Sbjct: 816 TPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 190/406 (46%), Gaps = 60/406 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+H Q I         + T L+ +     +     ++FD    +N+  +  LI G A N
Sbjct: 117 RQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARN 176

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL----GRGL--HCLIVKSGVE 161
           S  +  ++ F+ M     +PN  T+       A+L +L+     GRGL  H ++VK+G++
Sbjct: 177 SLNEEVLTLFMRMQDEGTQPNSFTF------AAALGVLAEEGVGGRGLQVHTVVVKNGLD 230

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
               V   L ++Y++ G  R A  +FD+T  K    SV+ WN +I+G +  G   +A+ +
Sbjct: 231 KTIPVSNSLINLYLKCGNVRKARILFDKTEVK----SVVTWNSMISGYAANGLDLEALGM 286

Query: 222 FGMMPKKNV----ASWVSLIDGFMRKGDLK----------KAGELFEQ------------ 255
           F  M   +V    +S+ S+I       +L+          K G +F+Q            
Sbjct: 287 FYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSK 346

Query: 256 ----------MPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
                       E G    VVSWTAMI+GF QN   E+A+ +F +M   GVR N+FT   
Sbjct: 347 CMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSV 406

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L+A   +   E    VH  +   ++     +GTAL+D Y K G ++ A+ VF     KD
Sbjct: 407 ILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKD 462

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++ W+AM+ G A  G  E AI+ F ++   G +P+   F +IL  C
Sbjct: 463 IVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVC 508



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 162/366 (44%), Gaps = 44/366 (12%)

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           YA ++FD    ++   +  L+ G + +   Q     F+ +  L +  +   +  V K  A
Sbjct: 49  YAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKVSA 108

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           +L     GR LHC  +K G   D  V   L D Y++    +    VFDE  E+N    V+
Sbjct: 109 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERN----VV 164

Query: 201 LWNVLINGCSKIGYLRKAVELF------GMMPK--------------------------- 227
            W  LI+G ++     + + LF      G  P                            
Sbjct: 165 TWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVV 224

Query: 228 ------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                 K +    SLI+ +++ G+++KA  LF++   K VV+W +MI+G++ NG   +AL
Sbjct: 225 VKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEAL 284

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            MF+ M    VR ++ +  S +  CA +  L    ++H  +    F     I TAL+  Y
Sbjct: 285 GMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAY 344

Query: 342 AKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           +KC  +  A  +F ET    ++++WTAMI G   +   E+A+  F +M   G  P+   +
Sbjct: 345 SKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTY 404

Query: 401 LAILTA 406
             ILTA
Sbjct: 405 SVILTA 410


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 207/631 (32%), Positives = 321/631 (50%), Gaps = 47/631 (7%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           + LR +H++IIL +L  +S +  +L+ + +  K +  A  +FD    +N+ I NV+IR  
Sbjct: 56  RTLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSY 115

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             N  +   +  F  M   +VRP+  T+P V K+ +    + +GR +H    K G+    
Sbjct: 116 VNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV   L  MY + G    A  V DE   ++    V+ WN L+ G ++      A+E+   
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRD----VVSWNSLVVGYAQNQRFDDALEVCRE 231

Query: 225 MPKKNVA----SWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           M    ++    +  SL+         ++    ++F +M +K +VSW  MI  + +N    
Sbjct: 232 MESVKISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPV 291

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ ++ +M   G   +  ++ S L AC    AL  G ++H YI          +  AL+
Sbjct: 292 EAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALI 351

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMYAKCG +E A  VF   K +D+++WTAMI      GR   A+  F K+  SG  PD  
Sbjct: 352 DMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSI 411

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458
            F+  L AC ++G ++   + F  M   Y I P ++H   +V+LL R G+  + Y+  Q+
Sbjct: 412 AFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQD 471

Query: 459 ----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                       +  KL QL P+    YVLLSNIYA  GRW++V
Sbjct: 472 MSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEV 531

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
             +R +M+ + +KK+PG S +EVN  +H F  G   H  + EI+ +L+ ++   +E GY+
Sbjct: 532 TNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYV 591

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQT-----TPGTTIKIVKKLTICGDCHS 602
           P +E  LH+++EE KE  L  HSEKLA+ F L+ T         TI+I K L ICGDCH 
Sbjct: 592 PDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHV 651

Query: 603 LMKYASKISQREIVLRDT-RFHYFKDGTCSC 632
             K  S+I+ REI++RDT RFH F+ G CSC
Sbjct: 652 AAKLISQITSREIIIRDTNRFHVFRFGVCSC 682


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 339/674 (50%), Gaps = 75/674 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +++    S + +  RQ+HA ++             L+        +D A  IF+     +
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD 267

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +N LI G   N H    I   + M    + PN  T   + K+ +      LGR +H 
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHG 327

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K+  + D ++ V L DMY +      A KVFD    ++    ++L N LI+GCS  G
Sbjct: 328 FMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRD----LILCNALISGCSHGG 383

Query: 214 YLRKAVELFGMMPK--------------KNVASWVS------------------------ 235
              +A+ LF  + K              K+ AS  +                        
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID + +   L  A  +FE+     +++ T+MI   SQ    E A+ +F +ML  G+  
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F + S L+ACA + A E G +VH ++    F      G ALV  YAKCG+IE A L F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               E+ +++W+AMI GLA HG  ++A++ F +M+  G  P+     ++L AC ++G V 
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQN-------- 458
            A  +F+SM+  + I+ + +H++ +++LL R G+        +S  +Q + +        
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683

Query: 459 ------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                       +  KL  L+P+   ++VLL+N YA+ G W +VA+VR LM+  +IKK+P
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEP 743

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKE 563
             S+IEV   VH F  G   H + KEI++KL ++     + G++P  +  LH++ + EKE
Sbjct: 744 AMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKE 803

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSE+LA+AF L+ T PG  I++ K L IC DCH   K+ SKI  REI++RD  RF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 863

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DGTCSC DYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 174/399 (43%), Gaps = 44/399 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAEN 107
           Q+HA  +     +   +   L++       +D A  +F+   + +N   +N L+    +N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M+   ++P    +  V  +      +  GR +H ++V+ G + D F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY+++G+   A  +F++ P+ +    V+ WN LI+GC   G+  +A+EL      
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSD----VVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 223 ------------------------------GMMPKKNVAS----WVSLIDGFMRKGDLKK 248
                                         G M K N  S     V L+D + +   L  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F+ M  + ++   A+I+G S  G  ++AL++F+++   G+  N  T+ + L + A 
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + A     +VH       F     +   L+D Y KC  +  A+ VF E    D++  T+M
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSM 476

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I  L+     E AI+ F +M+  G EPD  V  ++L AC
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 172/396 (43%), Gaps = 49/396 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAEN 107
            +HA ++     AS R    LIS  S  +    A   FD   P   H+ ++ L+   + N
Sbjct: 25  HLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRFFDEI-PDPCHVSWSSLVTAYSNN 81

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +S I  F  M    V  N    P V K V    L   G  +H + + +G   D FV 
Sbjct: 82  GLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVA 138

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
             L  MY   G    A +VF+E   +  + S   WN L++   K      A+++FG M  
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVS---WNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 227 --------------------------------------KKNVASWVSLIDGFMRKGDLKK 248
                                                  K+V +  +L+D +M+ G +  
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +FE+MP+  VVSW A+I+G   NG   +A+ +  QM  +G+  N FT+ S L AC+ 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            GA + G ++H ++   +      IG  LVDMYAK   ++ A  VF     +DL+   A+
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNAL 375

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           I G +  GR+++A+  F ++   G   + T   A+L
Sbjct: 376 ISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 143/322 (44%), Gaps = 50/322 (15%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +++  A+ +LL  G  LH  ++KSG    A  R HL   Y +  +   A + FDE P+  
Sbjct: 11  LTRYAAAQALLP-GAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRFFDEIPDPC 67

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------- 231
                + W+ L+   S  G  R A++ F  M  + V                        
Sbjct: 68  H----VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVH 123

Query: 232 ----------------SWVSLIDGFMRKGDLKKAGELF-EQMPEKGVVSWTAMINGFSQN 274
                           + V++  GF   G +  A  +F E   E+  VSW  +++ + +N
Sbjct: 124 AMAMATGFGSDVFVANALVAMYGGF---GFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            +   A+ +F +M+ +G++  +F     ++AC     +EAG +VH  +    +       
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            ALVDMY K G ++ AS++F +  + D+++W A+I G  ++G   +AI+   +M YSG  
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 395 PDGTVFLAILTACWYSGQVKLA 416
           P+     +IL AC  +G   L 
Sbjct: 301 PNVFTLSSILKACSGAGAFDLG 322


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 214/674 (31%), Positives = 339/674 (50%), Gaps = 75/674 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +++    S + +  RQ+HA ++             L+        +D A  IF+     +
Sbjct: 208 VVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSD 267

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +N LI G   N H    I   + M    + PN  T   + K+ +      LGR +H 
Sbjct: 268 VVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHG 327

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K+  + D ++ V L DMY +      A KVFD    ++    ++L N LI+GCS  G
Sbjct: 328 FMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRD----LILCNALISGCSHGG 383

Query: 214 YLRKAVELFGMMPK--------------KNVASWVS------------------------ 235
              +A+ LF  + K              K+ AS  +                        
Sbjct: 384 RHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVN 443

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID + +   L  A  +FE+     +++ T+MI   SQ    E A+ +F +ML  G+  
Sbjct: 444 GLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEP 503

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F + S L+ACA + A E G +VH ++    F      G ALV  YAKCG+IE A L F
Sbjct: 504 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAF 563

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               E+ +++W+AMI GLA HG  ++A++ F +M+  G  P+     ++L AC ++G V 
Sbjct: 564 SSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVD 623

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQN-------- 458
            A  +F+SM+  + I+ + +H++ +++LL R G+        +S  +Q + +        
Sbjct: 624 EAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGA 683

Query: 459 ------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                       +  KL  L+P+   ++VLL+N YA+ G W +VA+VR LM+  +IKK+P
Sbjct: 684 SRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEP 743

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKE 563
             S+IEV   VH F  G   H + KEI++KL ++     + G++P  +  LH++ + EKE
Sbjct: 744 AMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKE 803

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSE+LA+AF L+ T PG  I++ K L IC DCH   K+ SKI  REI++RD  RF
Sbjct: 804 LLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 863

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DGTCSC DYW
Sbjct: 864 HHFRDGTCSCGDYW 877



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/399 (24%), Positives = 174/399 (43%), Gaps = 44/399 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAEN 107
           Q+HA  +     +   +   L++       +D A  +F+   + +N   +N L+    +N
Sbjct: 121 QVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M+   ++P    +  V  +      +  GR +H ++V+ G + D F  
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY+++G+   A  +F++ P+ +    V+ WN LI+GC   G+  +A+EL      
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSD----VVSWNALISGCVLNGHDHRAIELLLQMKY 296

Query: 223 ------------------------------GMMPKKNVAS----WVSLIDGFMRKGDLKK 248
                                         G M K N  S     V L+D + +   L  
Sbjct: 297 SGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDD 356

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F+ M  + ++   A+I+G S  G  ++AL++F+++   G+  N  T+ + L + A 
Sbjct: 357 ARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTAS 416

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + A     +VH       F     +   L+D Y KC  +  A+ VF E    D++  T+M
Sbjct: 417 LEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSM 476

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I  L+     E AI+ F +M+  G EPD  V  ++L AC
Sbjct: 477 ITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 173/396 (43%), Gaps = 49/396 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAEN 107
            +HA ++     AS R    LIS  S  +    A  +FD   P   H+ ++ L+   + N
Sbjct: 25  HLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRVFDEI-PDPCHVSWSSLVTAYSNN 81

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +S I  F  M    V  N    P V K V    L   G  +H + + +G   D FV 
Sbjct: 82  GLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL---GAQVHAMAMATGFGSDVFVA 138

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
             L  MY   G    A +VF+E   +  + S   WN L++   K      A+++FG M  
Sbjct: 139 NALVAMYGGFGFMDDARRVFNEADSERNAVS---WNGLMSAYVKNDQCGDAIQVFGEMVW 195

Query: 227 --------------------------------------KKNVASWVSLIDGFMRKGDLKK 248
                                                  K+V +  +L+D +M+ G +  
Sbjct: 196 SGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDI 255

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +FE+MP+  VVSW A+I+G   NG   +A+ +  QM  +G+  N FT+ S L AC+ 
Sbjct: 256 ASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSG 315

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            GA + G ++H ++   +      IG  LVDMYAK   ++ A  VF     +DL+   A+
Sbjct: 316 AGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNAL 375

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           I G +  GR+++A+  F ++   G   + T   A+L
Sbjct: 376 ISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVL 411



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 144/322 (44%), Gaps = 50/322 (15%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +++  A+ +LL  G  LH  ++KSG    A  R HL   Y +  +   A +VFDE P+  
Sbjct: 11  LTRYAAAQALLP-GAHLHASLLKSGSL--ASFRNHLISFYSKCRRPCCARRVFDEIPDPC 67

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----------------------- 231
                + W+ L+   S  G  R A++ F  M  + V                        
Sbjct: 68  H----VSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVH 123

Query: 232 ----------------SWVSLIDGFMRKGDLKKAGELF-EQMPEKGVVSWTAMINGFSQN 274
                           + V++  GF   G +  A  +F E   E+  VSW  +++ + +N
Sbjct: 124 AMAMATGFGSDVFVANALVAMYGGF---GFMDDARRVFNEADSERNAVSWNGLMSAYVKN 180

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            +   A+ +F +M+ +G++  +F     ++AC     +EAG +VH  +    +       
Sbjct: 181 DQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTA 240

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            ALVDMY K G ++ AS++F +  + D+++W A+I G  ++G   +AI+   +M YSG  
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300

Query: 395 PDGTVFLAILTACWYSGQVKLA 416
           P+     +IL AC  +G   L 
Sbjct: 301 PNVFTLSSILKACSGAGAFDLG 322


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  342 bits (877), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 212/662 (32%), Positives = 336/662 (50%), Gaps = 79/662 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R+IH  ++   L         L+   S    I+ A+++F      ++  +N +I G   +
Sbjct: 203 RKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLH 262

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +     M     RPN  T     K+ A++    LGR LH  ++K     D F  
Sbjct: 263 DCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAA 322

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
           V L DMY +      A + +D  P+K+    ++ WN LI+G S+ G    AV LF  M  
Sbjct: 323 VGLVDMYSKCEMMDDARRAYDSMPKKD----IIAWNALISGYSQCGDHLDAVSLFSKMFS 378

Query: 228 --------------KNVASWV-------------------------SLIDGFMRKGDLKK 248
                         K+VAS                           SL+D + +   + +
Sbjct: 379 EDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDE 438

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++FE+   + +V++T+MI  +SQ G+ E+AL ++ QM DA ++ + F   S L+ACA 
Sbjct: 439 ASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACAN 498

Query: 309 VGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           + A E G ++H  +    FG    I    +LV+MYAKCG+IE A   F E   + +++W+
Sbjct: 499 LSAYEQGKQLH--VHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWS 556

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI G A HG  ++A++ F +M+  G  P+    +++L AC ++G V     +F+ M   
Sbjct: 557 AMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVM 616

Query: 427 YFIEPSVKHHTVVVNLLSRVGQ-------------DSQGY---------------QNSQN 458
           + I+P+ +H+  +++LL R G+             ++ G+               +  Q 
Sbjct: 617 FGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQK 676

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +   L  L+P+   ++VLL+NIYA+ G W++VA+VR  M+   +KK+PG S+IE+   V+
Sbjct: 677 AAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVY 736

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLAL 575
            F  G   H  + EI++KL+ +     + GY    E  +HN+ K EKE+ L  HSEKLA+
Sbjct: 737 TFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAV 796

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGLI T PG  I++ K L IC DCH+  K+  KI  REI++RD  RFH+FKDG+CSC D
Sbjct: 797 AFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGD 856

Query: 635 YW 636
           YW
Sbjct: 857 YW 858



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 119/498 (23%), Positives = 213/498 (42%), Gaps = 53/498 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++HA +I         +   L++  S  +   YA  + D  +  ++  ++ L+ G  +N 
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +  F  M  L V+ N  T+P V K+ +    L++GR +H + V +G E D FV  
Sbjct: 62  FVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
            L  MY + G    + ++F    E+N    V+ WN L +   +     +AV LF      
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGIVERN----VVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 223 GMMPKKNVASWV---------------------------------SLIDGFMRKGDLKKA 249
           G+MP +   S +                                 +L+D + + G+++ A
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGA 237

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             +F+ +    VVSW A+I G   +   + AL +  +M  +G R N FT+ SAL ACA +
Sbjct: 238 VAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAM 297

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G  E G ++H+ +   D          LVDMY+KC  ++ A   +    +KD++ W A+I
Sbjct: 298 GFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALI 357

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G +  G +  A+  F KM     + + T    +L +      +K+             I
Sbjct: 358 SGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQI-----HTISI 412

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP-KHPSSYVLLSNIYAAEGRWK 488
           +  +     V+N L     D+ G  N  +  +K+ + +  +   +Y  +   Y+  G  +
Sbjct: 413 KSGIYSDFYVINSL----LDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGE 468

Query: 489 DVARVRTLMQRRSIKKDP 506
           +  ++   MQ   IK DP
Sbjct: 469 EALKLYLQMQDADIKPDP 486



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 179/399 (44%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R++H   ++    +   +   L+   +    +D +  +F     +N+  +N L     ++
Sbjct: 102 RKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQS 161

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M+R  + PN  +   +  + A L    LGR +H L++K G++ D F  
Sbjct: 162 ELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSA 221

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------------- 208
             L DMY + G+  GA  VF +    +    V+ WN +I G                   
Sbjct: 222 NALVDMYSKAGEIEGAVAVFQDIAHPD----VVSWNAIIAGCVLHDCNDLALMLLDEMKG 277

Query: 209 ----------------CSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKK 248
                           C+ +G+     +L   + K +  S     V L+D + +   +  
Sbjct: 278 SGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDD 337

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A   ++ MP+K +++W A+I+G+SQ G+   A+++F +M    +  N  T+ + L + A 
Sbjct: 338 ARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVAS 397

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + A++   ++H     +       +  +L+D Y KC +I+ AS +F E   +DL+ +T+M
Sbjct: 398 LQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSM 457

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I   + +G  E+A++ + +M  +  +PD  +  ++L AC
Sbjct: 458 ITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNAC 496



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 105/234 (44%), Gaps = 8/234 (3%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + ++  + S  + K  +QIH   I   +++   +   L+ +      ID A  IF
Sbjct: 384 NQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIF 443

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +  T ++L  +  +I   ++    +  +  ++ M    ++P+      +  + A+LS   
Sbjct: 444 EERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYE 503

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ LH   +K G   D F    L +MY + G    A + F E P +     ++ W+ +I
Sbjct: 504 QGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRG----IVSWSAMI 559

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
            G ++ G+ ++A+ LF  M +  V     + VS++      G + +  + FE+M
Sbjct: 560 GGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKM 613


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 184/526 (34%), Positives = 290/526 (55%), Gaps = 67/526 (12%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y++      A   F++ P K+    +  WN LI+G ++ G ++KA +LF +MP+KN  SW
Sbjct: 146 YLRSYGVEAALAFFNKMPVKD----IASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSW 201

Query: 234 VSLIDGFMRKGDLKKAGEL-------------------------------FEQMPEKGVV 262
            ++I G++  GDL+ A EL                               F++M  K +V
Sbjct: 202 SAMISGYVEHGDLEAAEELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLV 261

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W +MI G+ +N  AE  L +F  M+++ VR N  ++ S L  C+ + AL  G ++H  +
Sbjct: 262 TWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLV 321

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           S +         T+L+ MY KCG++++A  +F E   KD+++W AMI G A HG   +A+
Sbjct: 322 SKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKAL 381

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F KM     +PD   F+A++ AC ++G V L + +F SM+ ++ IE    H+T V++L
Sbjct: 382 HLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDL 441

Query: 443 LSRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSY 474
           L R G+  +                          ++N   ++ +   LL L P   + Y
Sbjct: 442 LGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGY 501

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIH 532
           V L+NIYAA  +W  VA+VR +M+  ++ K PG+S+IE+    H F +    H     IH
Sbjct: 502 VQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIH 561

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
            KL ++    +  GY+P  E+ LH+++EE KE+ L  HSEKLA+AFGL++T PGT I++ 
Sbjct: 562 KKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVF 621

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +CGDCH  +K+ S I +REI++RD TRFH+F++G CSC DYW
Sbjct: 622 KNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 132/298 (44%), Gaps = 28/298 (9%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T +++       ++ A  IF     KNL  +N +I G  EN   +  +  F  M+   
Sbjct: 231 VETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESR 290

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           VRPN L+   V    ++LS L LGR +H L+ KS +  D      L  MY + G    A+
Sbjct: 291 VRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAW 350

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF 240
           K+F E P K+    V+ WN +I+G ++ G  RKA+ LF  M     K +  ++V++I   
Sbjct: 351 KLFLEMPRKD----VISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406

Query: 241 MRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
              G +    + F+ M      E   V +T +I+   + G  ++A+++  +M        
Sbjct: 407 NHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEM-------- 458

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM--YAKCGNIEAAS 351
            F   +A+      G L    R+H  +   +F  +  +         Y +  NI AA+
Sbjct: 459 PFKPHAAI-----YGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAAT 511


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 212/696 (30%), Positives = 347/696 (49%), Gaps = 103/696 (14%)

Query: 39   HSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
            H     +  +Q+HA   L N    +     L++  +    ++ A ++F  F  K+L  +N
Sbjct: 445  HVRGGVRLGKQVHA-YTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWN 503

Query: 99   VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
             +I  L++N  F+  + +   M+   VRP+ +T   V  + + L  L +GR +HC  +++
Sbjct: 504  TVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCYALRN 563

Query: 159  G-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
            G +  ++FV   L DMY    + +    VFD    +    +V +WN L+ G ++  +  +
Sbjct: 564  GDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRR----TVAVWNALLAGYARNEFDDQ 619

Query: 218  AVELF-----------------GMMP----------KKNVASWV-------------SLI 237
            A+ LF                  ++P          K+ +  ++             +L+
Sbjct: 620  ALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALM 679

Query: 238  DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--------- 288
            D + R G ++ +  +F +M ++ +VSW  MI G    G  + AL +  +M          
Sbjct: 680  DMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSD 739

Query: 289  -------DAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
                   D GV  + N  T+++ L  CA + AL  G  +H Y       +  A+G+ALVD
Sbjct: 740  TFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVD 799

Query: 340  MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG------T 393
            MYAKCG +  AS VF +   ++++TW  +I    +HG+ E+A++ F+ M   G       
Sbjct: 800  MYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVI 859

Query: 394  EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453
             P+   ++AI  AC +SG V   L+ F +M+  + +EP   H+  +V+LL R G+  + Y
Sbjct: 860  RPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAY 919

Query: 454  Q---------NSQNSFTKLLQ--------------------LKPKHPSSYVLLSNIYAAE 484
            +         N  ++++ LL                     L+P   S YVL+SNIY++ 
Sbjct: 920  ELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSA 979

Query: 485  GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGA 542
            G W     VR  M+   ++K+PG S+IE    VH+F +G   H  +KE+H  LE +    
Sbjct: 980  GLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRM 1039

Query: 543  REQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
            R++GY+P    VLHN+ +E++E + C HSE+LA+AFGL+ T PGTTI++ K L +C DCH
Sbjct: 1040 RKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCH 1099

Query: 602  SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
               K  SKI  REI+LRD  RFH+F +GTCSC DYW
Sbjct: 1100 VATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 102/187 (54%), Gaps = 2/187 (1%)

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           FG  P  +VA   SL++ + + GDL  A ++F+ +P++  VSW +MI    +  E E +L
Sbjct: 359 FGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSL 418

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
            +F  ML   V    FT+VS   AC+ V G +  G +VH Y +  +  L+     ALV M
Sbjct: 419 HLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAY-TLRNGDLRTYTNNALVTM 477

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YA+ G +  A  +FG    KDL++W  +I  L+ + R+E+A+ Y   M+  G  PDG   
Sbjct: 478 YARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTL 537

Query: 401 LAILTAC 407
            ++L AC
Sbjct: 538 ASVLPAC 544



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 168/394 (42%), Gaps = 41/394 (10%)

Query: 48  RQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           +QIHA +    H   +S  +   L++       +  A  +FD    ++   +N +I  L 
Sbjct: 350 KQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLC 409

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVKSGVEYDA 164
               ++  +  F  ML  +V P   T   V+ + + +   + LG+ +H   +++G +   
Sbjct: 410 RFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRT 468

Query: 165 FVRVHLADMYVQLGKTRGA---FKVFD------------ETPEKNKSESVLLWNVL---- 205
           +    L  MY +LG+   A   F VFD               + ++ E  L++  L    
Sbjct: 469 YTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVD 528

Query: 206 ------------INGCSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMRKGDLKK 248
                       +  CS++  LR   E+     +     +N     +L+D +      KK
Sbjct: 529 GVRPDGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK 588

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACA 307
              +F+ +  + V  W A++ G+++N   ++AL +F +M+ ++    N  T  S L AC 
Sbjct: 589 GRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACV 648

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           +         +H YI    FG    +  AL+DMY++ G +E +  +FG   ++D+++W  
Sbjct: 649 RCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNT 708

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           MI G  + GRY+ A+    +M     E     F+
Sbjct: 709 MITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFV 742


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 194/544 (35%), Positives = 288/544 (52%), Gaps = 74/544 (13%)

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
             V Y+  +  H A      G   GA++VF   P ++    V  WN +++G SK G + +
Sbjct: 71  DAVSYNTLLSCHFA-----CGDIDGAWRVFSTMPVRD----VTSWNTMVSGLSKNGAIEE 121

Query: 218 AVELFGMMPKKNVASW--------------------------------VSLIDGFMRKGD 245
           A  +F  MP +N  SW                                 +++ G+M  G+
Sbjct: 122 AEAMFRAMPARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGN 181

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALS 304
           ++KA E F  MP + +VSW A++ G+ +N  A  AL +F  M+ DA V+ N  T+ S L 
Sbjct: 182 VQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLL 241

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
            C+ + AL  G +VH +      G    +GT+L+ MY KCG+++ A  +F E   KD++ 
Sbjct: 242 GCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVA 301

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI G A HG   +AI+ F+KM   G  PD    LA+LTAC ++G     +  F++M+
Sbjct: 302 WNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQ 361

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---S 456
             Y IEP V H++ +V+LL R G   +                          Y+N   +
Sbjct: 362 EAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFA 421

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           + +  KL++  P++  +YV L+NIYA   RW DV+RVR  M+  ++ K PG+S++E+ G 
Sbjct: 422 EFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGV 481

Query: 517 VHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKL 573
            H F +    H     IH KL+ +    +  GY P  ++ LH+++E  K + L  HSEKL
Sbjct: 482 RHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKL 541

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFGLI T+PG T++I K L ICGDCH+  K  SKI  REI+LRD TRFH+F+ G CSC
Sbjct: 542 AIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSC 601

Query: 633 RDYW 636
            DYW
Sbjct: 602 GDYW 605



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/230 (28%), Positives = 108/230 (46%), Gaps = 15/230 (6%)

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKI---GYLRKAVELFGMMPKKNVASWVSLID 238
           GA + F  T  K  +     +N L+ G +K    G L  A  LF  +P  +  S+ +L+ 
Sbjct: 25  GAEEAFASTQLKTTTT----YNCLLAGYAKASGPGRLADARRLFDSIPHPDAVSYNTLLS 80

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
                GD+  A  +F  MP + V SW  M++G S+NG  E+A AMF  M      + +  
Sbjct: 81  CHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAVSWN-A 139

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +V+A ++   +GA E   R  N     D      + TA+V  Y   GN++ A   F    
Sbjct: 140 MVAARASSGDMGAAENLFR--NAPEKTD----AILWTAMVSGYMDTGNVQKAMEYFRAMP 193

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTAC 407
            ++L++W A++ G   + R   A++ FK M+     +P+ +   ++L  C
Sbjct: 194 VRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGC 243



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 14/231 (6%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-V 125
           T ++S      ++  A+  F     +NL  +N ++ G  +NS     +  F  M+  + V
Sbjct: 170 TAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIV 229

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           +PN  T   V    ++LS L  GR +H   +K  +     V   L  MY + G    A K
Sbjct: 230 QPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACK 289

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSL---IDGFM 241
           +FDE   K+    ++ WN +I+G ++ G  RKA++LF  M  +  V  W++L   +   +
Sbjct: 290 LFDEMHTKD----IVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACI 345

Query: 242 RKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
             G      + FE M      E  V  ++ M++   + G  E+A+ M   M
Sbjct: 346 HTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSM 396


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 219/671 (32%), Positives = 344/671 (51%), Gaps = 77/671 (11%)

Query: 4   HVFNRLTTAIAPTTNIKSSHK-----PS-NNITETHIISLIHSSNSTKQLRQIHAQIILH 57
           +V N L    A   N++ + K     P  ++++   I++        ++ + I  Q+   
Sbjct: 177 YVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIFDQMPQR 236

Query: 58  NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
           N+ AS+ +   L     + +    A  +F+    K++  ++ LI G  +N  ++  +  F
Sbjct: 237 NIVASNSMIVLLGKMGQVME----AWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMF 292

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
           + M    +R + +    V  + A LS++  G+ +H L+++ G+E            YV L
Sbjct: 293 IEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIES-----------YVNL 341

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
                                    N LI+  S  G +  A +LF      +  SW S+I
Sbjct: 342 Q------------------------NALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMI 377

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G M+ G ++KA  LF+ MPEK +VSW+A+I+G++Q+    + LA+F +M    +R ++ 
Sbjct: 378 SGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDET 437

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
            +VS +SAC  + AL+ G  VH YI  N   +   +GT L+DMY KCG +E A  VF   
Sbjct: 438 ILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGM 497

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
           +EK + +W A+I GLA++G  E+++  F +M  +G  P+   F+ +L AC + G V    
Sbjct: 498 EEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGR 557

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------------- 452
             F SM   + IEP+VKH+  +V+LL R G  ++                          
Sbjct: 558 CHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKK 617

Query: 453 ---YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
               +  +    KL++L+P H   +VLLSNI+A++G W+DV  VR +M+++ + K PG S
Sbjct: 618 HGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLEVRGMMKQQGVVKTPGCS 677

Query: 510 YIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEAL 566
            IE NG VH F AG   H    ++   L ++    + +GY P T  V  +I +EEKE  L
Sbjct: 678 LIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPDTNEVSLDIDEEEKETTL 737

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+AFGL+  +P T I+I+K L IC DCH+  K  SK   REIV+RD  RFHYF
Sbjct: 738 FRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISKAYAREIVVRDRHRFHYF 797

Query: 626 KDGTCSCRDYW 636
           K+G CSC DYW
Sbjct: 798 KEGACSCMDYW 808



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/446 (30%), Positives = 235/446 (52%), Gaps = 51/446 (11%)

Query: 1   MKGHVFNRLTTAIAPTTNIKSSHKPSN--NITETHIISLIHSSNSTKQLRQIHAQIIL-- 56
           MK    N+L++A+  T N K + KP+   +I ETH+    H+ ++ KQ  +I +Q+IL  
Sbjct: 13  MKLSKLNQLSSALKSTFNHKPTFKPTITLSILETHL----HNCHNLKQFNRILSQMILTG 68

Query: 57  --HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
              + FA+SR+     S+ S    +DY+L IFD     N  ++N ++R   +++  +  +
Sbjct: 69  FISDTFAASRLLK--FSTDSPFIGLDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKAL 126

Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
             +  M++ +V P+  TYP V ++ A   L   G+ +H  ++K G + D +V+  L +MY
Sbjct: 127 LLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMY 186

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
              G  R A K+FDE+P  +       WN ++ G  K G + +A  +F  MP++N+ +  
Sbjct: 187 AVCGNMRDARKLFDESPVLDSVS----WNSILAGYVKKGDVEEAKLIFDQMPQRNIVASN 242

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           S+I    + G + +A +LF +M EK +VSW+A+I+G+ QNG  E+AL MF +M   G+R 
Sbjct: 243 SMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL 302

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA---------- 342
           ++  VVS LSACA +  ++ G  +H  +     G++  +    AL+ MY+          
Sbjct: 303 DEVVVVSVLSACAHLSIVKTGKMIHGLVI--RMGIESYVNLQNALIHMYSGSGEIMDAQK 360

Query: 343 ---------------------KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
                                KCG++E A  +F    EKD+++W+A+I G A H  + + 
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           +  F +M      PD T+ +++++AC
Sbjct: 421 LALFHEMQLGQIRPDETILVSVISAC 446


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 179/466 (38%), Positives = 272/466 (58%), Gaps = 32/466 (6%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N L+   SK G +  A  +F  M  K+V SW +++ G++    L KA E+FE+MP K  +
Sbjct: 337 NALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNEL 396

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW  M++G+   G +E AL +F +M    V+  D+T   A+SAC ++G+L+ G ++H ++
Sbjct: 397 SWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHL 456

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
               F    + G AL+ MYA+CG ++ A+L+F      D ++W AMI  L  HG   +A+
Sbjct: 457 VQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREAL 516

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
           + F +M+  G  PD   FL +LTAC +SG V     +F+SM+ D+ I P   H+T +++L
Sbjct: 517 ELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDL 576

Query: 443 LSRVGQDSQ----------------------GYQNSQN------SFTKLLQLKPKHPSSY 474
           L R G+  +                      G + S +      +  +L ++ P+H  +Y
Sbjct: 577 LGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTY 636

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIH 532
           +LLSN Y+A GRW D ARVR LM+ R +KK+PG S+IE    VH F  G   H  A +++
Sbjct: 637 ILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVY 696

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
             LE + A  R+ GY+P T+ VLH+++  +KE  L  HSE+LA+ FGL++  PG T+ ++
Sbjct: 697 KFLEMVGARMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVL 756

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K L IC DCH++M + SK   REIV+RD  RFH+FKDG CSC +YW
Sbjct: 757 KNLRICDDCHAVMMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/429 (25%), Positives = 194/429 (45%), Gaps = 61/429 (14%)

Query: 47  LRQIHAQIILHNLFASSRI---------TTQLISSASLHKSIDYALSIFDHFTP--KNLH 95
           LR IH   +  +L A++ +          T L+++ +    +  A+S FD      ++  
Sbjct: 63  LRLIHLYTLSGDLPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTV 122

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGR--GLH 152
           + N +I   A  SH    ++ F  +L   S+RP+  ++  +  +   L  +S+     L 
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQ 182

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQ---LGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
           C ++KSG      V   L  +Y++   L  TR A KV DE                    
Sbjct: 183 CSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDE-------------------- 222

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                          MP K+  +W +++ G++R+GD+  A  +FE++  K  V W AMI+
Sbjct: 223 ---------------MPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDVVWNAMIS 267

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS--CNDF 327
           G+  +G   +A  +F +M+   V  ++FT  S LSACA  G    G  VH  I+    +F
Sbjct: 268 GYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVLSACANAGFFAHGKSVHGQITRLQPNF 327

Query: 328 GLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
             + A  +  ALV +Y+KCGNI  A  +F   K KD+++W  ++ G       ++A++ F
Sbjct: 328 VPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVF 387

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           ++M Y     +   ++ +++   + G  + AL  F+ MR +  ++P    +   ++    
Sbjct: 388 EEMPYK----NELSWMVMVSGYVHGGFSEDALKLFNRMRAED-VKPCDYTYAGAISACGE 442

Query: 446 VGQDSQGYQ 454
           +G    G Q
Sbjct: 443 LGSLKHGKQ 451



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 50/271 (18%)

Query: 52  AQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENSHF 110
           A+ I  N+ +   ++   I S  +  S +D A+ +F+    KN   + V++ G       
Sbjct: 352 ARRIFDNMKSKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFS 411

Query: 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL 170
           +  +  F  M    V+P   TY     +   L  L  G+ LH  +V+ G E        L
Sbjct: 412 EDALKLFNRMRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNAL 471

Query: 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL--------- 221
             MY + G  + A  +F   P  +     + WN +I+   + G+ R+A+EL         
Sbjct: 472 ITMYARCGAVKEANLMFLVMPNIDS----VSWNAMISALGQHGHGREALELFDRMVAEGI 527

Query: 222 ---------------------------------FGMMPKKNVASWVSLIDGFMRKGDLKK 248
                                            FG++P ++   +  LID   R G + +
Sbjct: 528 YPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGED--HYTRLIDLLGRAGRIGE 585

Query: 249 AGELFEQMPEKGVVS-WTAMINGFSQNGEAE 278
           A +L + MP +   S W A+++G   +G+ E
Sbjct: 586 ARDLIKTMPFEPTPSIWEAILSGCRTSGDME 616


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 205/703 (29%), Positives = 353/703 (50%), Gaps = 119/703 (16%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HAQ++++ +     + ++L+        ++ A  +FD  + +N+  +  ++       
Sbjct: 31  QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG 90

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            ++  I  F  M+   VRP+   +P V K+ + L    +G+ ++  ++  G E ++ V+ 
Sbjct: 91  DYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 150

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
            + DM+++ G+   A + F+E   K+    V +WN++++G +  G  +KA+ +F      
Sbjct: 151 SILDMFIKCGRMDIARRFFEEIEFKD----VFMWNIMVSGYTSKGEFKKALNVFRKMVLE 206

Query: 223 GMMPKK-NVASWV---------------------------------SLIDGFMRKGDLKK 248
           G+ P    +AS V                                 SL+D + +   ++ 
Sbjct: 207 GVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEV 266

Query: 249 AGELFEQMPEKGVVSWTAM--INGFSQNGEAEKALAMFFQM------------------- 287
           A   F  + +  +VSW AM  + GF+Q G+ + AL  F +M                   
Sbjct: 267 ARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMHIACSVFSELSTRDVVVWN 326

Query: 288 ---------------LD-------AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
                          LD       + V  N  T+VSAL AC+K+ AL  G  +H +I   
Sbjct: 327 SIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRC 386

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                  I  +L+DMY +CG+I+ +  +F    ++DL++W  MI    +HG    A+  F
Sbjct: 387 GLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLF 446

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           ++    G +P+   F  +L+AC +SG ++    +F  M+ +Y ++P+V+ +  +V+LLSR
Sbjct: 447 QQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSR 506

Query: 446 VGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVLL 477
            GQ ++  +                             ++ +   L +L+P+   +YVL+
Sbjct: 507 AGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLM 566

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           +NIY+A GRW+D A++R LM+ R + K PG S+IEV   +H F  G   H L ++I +K+
Sbjct: 567 ANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKM 626

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E +    +E GY+P T +VL ++ E EKE +L  HSEK+ALAFGLI TT GT ++I+K L
Sbjct: 627 ESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNL 686

Query: 595 TICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +CGDCHS  K+ SK+ +R+I++RD  RFH+F DG CSC DYW
Sbjct: 687 RVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 729



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 162/340 (47%), Gaps = 52/340 (15%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  + +    L  L LG  +H  +V +GV+   F+   L ++Y Q G    A ++FD+  
Sbjct: 13  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 72

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------------PK------------ 227
           E+N    V  W  ++     +G   + ++LF +M            PK            
Sbjct: 73  ERN----VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 128

Query: 228 --KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
             K+V  ++             S++D F++ G +  A   FE++  K V  W  M++G++
Sbjct: 129 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 188

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKG 331
             GE +KAL +F +M+  GV+ N  T+ SA+SAC  +  L  G  +H Y I   +     
Sbjct: 189 SKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDL 248

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM--IWGLAIHGRYEQAIQYFKKMM 389
            +G +LVD YAKC ++E A   FG  K+ DL++W AM  + G   +G  + A+++F++M 
Sbjct: 249 LVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGKAALEFFQRMH 308

Query: 390 YSG------TEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            +       +  D  V+ +I++AC  SG+   AL+    M
Sbjct: 309 IACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREM 348



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 114/218 (52%), Gaps = 4/218 (1%)

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--NVASWVS--LIDGFMRKGDLKKA 249
           N  E + ++  ++  C K+  LR   ++   +     +V  ++   L++ + + G ++ A
Sbjct: 5   NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 64

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             +F++M E+ V SWTA++  +   G+ E+ + +F+ M++ GVR + F       AC+++
Sbjct: 65  RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 124

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
                G  V++Y+    F     +  +++DM+ KCG ++ A   F E + KD+  W  M+
Sbjct: 125 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 184

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            G    G +++A+  F+KM+  G +P+     + ++AC
Sbjct: 185 SGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSAC 222


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 216/646 (33%), Positives = 321/646 (49%), Gaps = 93/646 (14%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
           D AL +F     ++L  +N LI GL+                 F   +  F  +LR  VR
Sbjct: 65  DAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR 124

Query: 127 PNRLTYPF-----------VSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMY 174
              L               VS +V    LL  GR      +     + D      +   Y
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGY 184

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
            Q G+   A  +FDE P++N    V+ W  +I+G ++ G +  A +LF +MP++N  SW 
Sbjct: 185 CQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT 240

Query: 235 SLIDGFMRKGDLKKAGELFEQMPE---------------KGVV----------------S 263
           +++ G+++ G ++ A ELF  MPE               +G+V                +
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGT 300

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W+AMI  + QN    +AL+ F +ML  GVR N  +V+S L+ CA +  L+ G  VH  + 
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
              F +     +AL+ MY KCGN++ A  VF   + KD++ W +MI G A HG  EQA+ 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F  M  +G  PDG  ++  LTAC Y+G+VK     F+SM  +  I P  +H++ +V+LL
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 444 SRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYV 475
            R G   + +   +N                            +  KLL+L+P +   YV
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGNAGPYV 540

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIH 532
           LLS+IY + GRW+D +++R  +  R++ K PG S+IE +  VH F +G    H     I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
             LE +     E GY     +VLH+I EE K  +L  HSE+ A+A+GL++   G  I+++
Sbjct: 601 RILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVM 660

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K L +CGDCHS +K  +KI+ REIVLRD  RFH+FKDG CSCRDYW
Sbjct: 661 KNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 14/223 (6%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N  I   ++ G +  A   F  MP +  AS+ +L+ G+ R      A  LF +MP + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           S+ A+I+G S   +     A     +        FT  S L    + G L   +R+   +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFT--SLLRGYVRHGLLADAIRLFQQM 138

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +      +   L+D     G +  A  +F E  ++D++ WTAM+ G    GR  +A 
Sbjct: 139 PERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 383 QYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSM 423
             F +M      P   V  + A+++    +G+V LA   F+ M
Sbjct: 195 ALFDEM------PKRNVVSWTAMISGYAQNGEVNLARKLFEVM 231


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  342 bits (876), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 194/602 (32%), Positives = 317/602 (52%), Gaps = 63/602 (10%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +I+    +  +D A    +  + K    +N +I G A    +      F  M+   ++
Sbjct: 227 TTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQ 286

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            +  T+  V    A+     LG+ +H   +K+                           V
Sbjct: 287 LDEFTFTSVISVCANAGCFRLGKEMHAYFLKT---------------------------V 319

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
            +  P+     ++ + N LI    K G +  A E+F  MP++++ SW  ++ G++    +
Sbjct: 320 ANPAPDV----AMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCM 375

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            +A   F +MPEK ++SW  MI+G +Q G AE+AL  F +M   G    D+    A+ +C
Sbjct: 376 DEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISC 435

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           + +G+L+ G ++H  +    +    + G AL+ MYA+CG ++AA  +F      D ++W 
Sbjct: 436 SVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWN 495

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI  L  HG+  QAI+ F++M+  G  PD   FL +++AC ++G VK    +FDSM   
Sbjct: 496 AMIAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNV 555

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---------------------------- 458
           Y + P  +H+  +++LL R G+ S+  +  ++                            
Sbjct: 556 YGVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIE 615

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  +L +LKP+H  +YVLLSN+YA  G+W D+A+VR LM+ R +KK+PG S+IEV   VH
Sbjct: 616 AAERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVH 675

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLAL 575
            F  G   H   ++I++ LE ++   R+ GY+P T+ VLH+++ + KE  L  HSEKLA+
Sbjct: 676 SFLVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAV 735

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           A+G ++   G T+++ K L ICGDCH+  K+ SK+  REIV+RD  RFH+F+DG CSC D
Sbjct: 736 AYGFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGD 795

Query: 635 YW 636
           YW
Sbjct: 796 YW 797



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 189/486 (38%), Gaps = 104/486 (21%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF----- 89
           I  + S  S    R +HA +I         I  +LI   S    ++YA  +FD       
Sbjct: 20  ICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDI 79

Query: 90  -------------------------TPKNLH---IFNVLIRGLAENSHFQSCISHFVFML 121
                                    TP  +     +N +I   + N    + I  F  M 
Sbjct: 80  VARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQ 139

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLG----RGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
           R + RP+  T+  V   + +L+L++      + LHC +VKSG  +   V   L   YV+ 
Sbjct: 140 RDNFRPDNYTFTSV---LGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKC 196

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
             +  A                               + +A +LF  MP ++  SW ++I
Sbjct: 197 AASPSA--------------------------QSSSLMAEARKLFDEMPNRDELSWTTII 230

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
            G+++  DL  A E      +K  V+W AMI+G++  G   +A  MF +M+ + ++ ++F
Sbjct: 231 TGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEF 290

Query: 298 TVVSALSACAKVGALEAGVRVHNY----ISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           T  S +S CA  G    G  +H Y    ++     +   +  AL+  Y KCG ++ A  +
Sbjct: 291 TFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEI 350

Query: 354 FGETKEKDL-------------------------------LTWTAMIWGLAIHGRYEQAI 382
           F +  E+DL                               L+W  MI GLA  G  E+A+
Sbjct: 351 FNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEAL 410

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS-MRFDYFIEPSVKHHTVVVN 441
           ++F +M   G EP    F   + +C   G +K         +R+ Y  E S+     ++ 
Sbjct: 411 KFFNRMKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGY--ESSLSAGNALIT 468

Query: 442 LLSRVG 447
           + +R G
Sbjct: 469 MYARCG 474



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/240 (22%), Positives = 104/240 (43%), Gaps = 20/240 (8%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S K  RQ+HAQ++ +   +S      LI+  +    +D A  +F +    +   +N +I 
Sbjct: 440 SLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAMIA 499

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR----GLHCLIVKS 158
            L ++      I  F  ML+  + P+R+++  V  + +   L+  GR     +H +    
Sbjct: 500 ALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVY--- 556

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           GV  D      + D+  + GK   A +V +  P +  +    +W  L+ GC   G +   
Sbjct: 557 GVNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAP---IWEALLAGCRIHGNIDLG 613

Query: 219 VE----LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
           +E    LF + P+ +  ++V L + +   G      ++ + M ++GV      SW  + N
Sbjct: 614 IEAAERLFELKPQHD-GTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVEN 672


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  341 bits (875), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 315/608 (51%), Gaps = 80/608 (13%)

Query: 63  SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
           +RI   L++S  L +S +               + + LIR  A +   Q+ +  +  ++R
Sbjct: 37  ARIQAALVTSGLLRRSAE---------------LHDALIRAHASSGRPQAALPLYAHLIR 81

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
             + P   T P + KS+A    +   R L   +      +   VR+ LA           
Sbjct: 82  AGLFPTPHTLPSLLKSLALSPAVPGARRLALAV------HAHAVRLGLAGF--------- 126

Query: 183 AFKVFDETPEKNKSESVLLWNVLIN-GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
                           +L+ N LI      +G L  A  L       + +++ +LI    
Sbjct: 127 ----------------LLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHA 170

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           R G +  A  LF++MPE+  VSW+AM+NG+ Q G+  +AL +F QM   GVR +D  +V 
Sbjct: 171 RAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVG 230

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L+ACA++GALE G  VH Y+  N+  +   +GTALVDMYAKCG ++    VF   K+K+
Sbjct: 231 VLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKN 290

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           +L WT MI GLA+HGR   ++  F +M  SG +PD   F+  L AC ++G V      F+
Sbjct: 291 VLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFN 350

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------- 462
           SM  +Y I+P ++H+  +V+LL+R G  S+     +    K                   
Sbjct: 351 SMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNV 410

Query: 463 ---------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
                     ++L+P    +YVLL NIY+A GR      +R LM+ + ++K PG S +E+
Sbjct: 411 ELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEI 470

Query: 514 NGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNIKEEK-EEALGCH 569
            G +H+F  G   H   K+I +K  +I +  R E+GY+P  + VL +I+EE+ E AL  H
Sbjct: 471 KGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRH 530

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SEKLA+AF LI T     I+IVK L +C DCH + K  SK+  REI++RD TRFH FKDG
Sbjct: 531 SEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDG 590

Query: 629 TCSCRDYW 636
           TCSC+DYW
Sbjct: 591 TCSCKDYW 598



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 96/228 (42%), Gaps = 17/228 (7%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           + +Q + +H  +  +N+  +  + T L+   +    +   + +F+    KN+  +  +I+
Sbjct: 240 ALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIK 299

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVE 161
           GLA +      ++ F  M    V+P+ + +     +     L+  GR L + ++   G++
Sbjct: 300 GLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIK 359

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
                   + D+  + G    A  + ++ P K  +   L+W  L+ GC       K VEL
Sbjct: 360 PKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDA---LIWGALMAGCR----FHKNVEL 412

Query: 222 --------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                     + P K+  ++V L + +   G    A E+   M EKGV
Sbjct: 413 AEYVIKHWIELEPDKS-GAYVLLGNIYSASGRHASAREIRNLMREKGV 459


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 215/646 (33%), Positives = 321/646 (49%), Gaps = 93/646 (14%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
           D AL +F     ++L  +N LI GL+                 F   +  F  +LR  VR
Sbjct: 65  DAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR 124

Query: 127 PNRLTYPF-----------VSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMY 174
              L               VS +V    LL  GR      +     + D      +   Y
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGY 184

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
            Q G+   A  +FDE P++N    V+ W  +I+G ++ G +  A +LF +MP++N  SW 
Sbjct: 185 CQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT 240

Query: 235 SLIDGFMRKGDLKKAGELFEQMPE---------------KGVV----------------S 263
           +++ G+++ G ++ A ELF  MPE               +G+V                +
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT 300

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W+AMI  + QN    +AL+ F +ML  GVR N  +V+S L+ CA +  L+ G  VH  + 
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
              F +     +AL+ MY KCGN++ A  VF   + KD++ W +MI G A HG  EQA+ 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F  M  +G  PDG  ++  LTAC Y+G+VK     F+SM  +  I P  +H++ +V+LL
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 444 SRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYV 475
            R G   + +   +N                            +  KLL+L+P +   YV
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV 540

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIH 532
           LLS+IY + GRW+D +++R  +  R++ K PG S+IE +  VH F +G    H     I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
             LE +     E GY     +VLH+I EE K  +L  HSE+ A+A+GL++   G  I+++
Sbjct: 601 RILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVM 660

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K L +CGDCHS +K  +KI+ REI+LRD  RFH+FKDG CSCRDYW
Sbjct: 661 KNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A ++F+    ++   ++ +I+   +N      +S F  ML   VRPN  +   +   
Sbjct: 283 VDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A+L++L  GR +H  +++   + D F    L  MY++ G    A +VF     K+    
Sbjct: 343 CAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD---- 398

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           +++WN +I G ++ G   +A+ +F      GM P  +  +++  +      G +K+  E+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP--DGITYIGALTACSYTGKVKEGREI 456

Query: 253 FEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           F  M        G   ++ M++   ++G  E+A  +   M
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM 496



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 14/223 (6%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N  I   ++ G +  A   F  MP +  AS+ +L+ G+ R      A  LF +MP + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           S+ A+I+G S   +     A     +        FT  S L    + G L   +R+   +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFT--SLLRGYVRHGLLADAIRLFQQM 138

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +      +   L+D     G +  A  +F E  ++D++ WTAM+ G    GR  +A 
Sbjct: 139 PERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 383 QYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSM 423
             F +M      P   V  + A+++    +G+V LA   F+ M
Sbjct: 195 ALFDEM------PKRNVVSWTAMISGYAQNGEVNLARKLFEVM 231


>gi|357124715|ref|XP_003564043.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Brachypodium distachyon]
          Length = 599

 Score =  341 bits (874), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 185/476 (38%), Positives = 268/476 (56%), Gaps = 40/476 (8%)

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKK---NVASWVSLIDGFMRKGDLKKAGEL 252
           S + LL   L NG + +     A  LFG        +V SW +++ G  R G +  A +L
Sbjct: 129 SFNALLAAYLANGRADL-----ASRLFGSCSSPGDLDVVSWTTMVGGLCRLGLVDDARKL 183

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F+ MPE+ ++SW AMI+G+ + G    AL +F QM   G+  N F   SA+ AC   G L
Sbjct: 184 FDGMPERNLISWNAMISGYVKAGRFLDALEVFDQMRALGIEGNGFVAASAVVACTGAGVL 243

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
             G  VH ++  +   +   + TA+VDMY KCG++E A  VF     K L +W  MI GL
Sbjct: 244 ARGREVHRWVEQSGITMDEKLATAVVDMYCKCGSVEEAWHVFKVLPTKGLTSWNCMIGGL 303

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A+HGR + AI+ F +M      PD    + +LTAC ++G V    N+F+ +   Y IEP 
Sbjct: 304 AVHGRCKDAIELFHEMEREDVAPDDVTLVNVLTACAHTGMVSDGHNYFNYIVQRYGIEPK 363

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFT----------------------------KLL 464
           ++H+  +V+L  R G   +  +   +                               +++
Sbjct: 364 MEHYGCMVDLFGRAGLLDEAKKVIDDMPMEPDIGVLGALFGACKIHRDLDLGEAIGWRVI 423

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG 524
           +L P++   YVLL+N+ A+ G+W DVA+VR LM  R++ K+ G S IE++G V  F+ G 
Sbjct: 424 ELDPQNSGRYVLLANLLASAGQWVDVAKVRRLMDERNVSKEAGRSVIEIDGEVCEFQCGS 483

Query: 525 --HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQ 581
             H   KEI + ++D+M   R +GYMP T  VLH+I +EEKE  L  HSEKLA+AFGL++
Sbjct: 484 LCHAQEKEIFAAVKDMMRKIRLEGYMPDTSDVLHDITEEEKEVPLQYHSEKLAIAFGLLR 543

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T PG T++I K L +C DCH   K+ S++ +REIV+RD  RFH+FKDGTCSCRDYW
Sbjct: 544 TRPGDTVRITKNLRVCRDCHEATKFISRVFEREIVVRDRNRFHHFKDGTCSCRDYW 599


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  341 bits (874), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 215/663 (32%), Positives = 336/663 (50%), Gaps = 78/663 (11%)

Query: 48  RQIHAQIILHNLFASSRI-TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           R++H  +     F +  +  T++I+  S+  S   +  +FD    KNL  +N ++     
Sbjct: 125 RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 184

Query: 107 NSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           N  F+  +S F  ++ ++  +P+  T P V K+ A L  L LG+ +H +  K  +  D F
Sbjct: 185 NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 244

Query: 166 VRVHLADMYVQLGKTRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           V   L  MY + G    A K VFD    K  S     WN L+ G ++    RKA++L+  
Sbjct: 245 VGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSS----WNALLCGYAQNSDPRKALDLYLQ 300

Query: 225 MPKKNV-ASWVSL------------------IDGFMRKGDLK------------------ 247
           M    +   W ++                  I GF  +  L                   
Sbjct: 301 MTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGK 360

Query: 248 --KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
              A  LF+ M  + +VSW  MI G+SQNG  ++A+ +F QML  G++  +  ++    A
Sbjct: 361 PFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGA 420

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+++ AL  G  +H +           + ++++DMYAK G I  +  +F   +EKD+ +W
Sbjct: 421 CSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +I G  IHGR ++A++ F+KM+  G +PD   F  IL AC ++G V+  L +F+ M  
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 540

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQNSQNSF---------- 460
            + IEP ++H+T VV++L R G+               DS+ + +  +S           
Sbjct: 541 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGE 600

Query: 461 ---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
               KLL+L+P+ P +YVL+SN++A  G+W DV RVR  M+   ++KD G S+IEV G V
Sbjct: 601 KVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKV 660

Query: 518 HRFEAGGHKLA--KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F  G   L   +E+      +       GY P T  VLH+++EE K   L  HSEKLA
Sbjct: 661 HNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLA 720

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCR 633
           ++FGL+ T  G  +++ K L ICGDCH+  K+ SK+  R+IV+RD  RFH+F+DG CSC 
Sbjct: 721 ISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCG 780

Query: 634 DYW 636
           DYW
Sbjct: 781 DYW 783



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 23/163 (14%)

Query: 268 INGFSQNGEAEKALAMFFQ------MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           I    ++G  ++AL  F Q      +LD+  R+    V+  L AC +   +E G R+H  
Sbjct: 74  IKKLCESGNLKEALD-FLQRESDDVVLDSAQRSEAMGVL--LQACGQRKDIEVGRRLHEM 130

Query: 322 IS-----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +S     CNDF     + T ++ MY+ CG+   + +VF + + K+L  W A++     + 
Sbjct: 131 VSASTQFCNDF----VLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNE 186

Query: 377 RYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLAL 417
            +E A+  F +++ S TE  PD      ++ AC  +G + L L
Sbjct: 187 LFEDAMSIFSELI-SVTEHKPDNFTLPCVIKAC--AGLLDLGL 226


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 215/646 (33%), Positives = 321/646 (49%), Gaps = 93/646 (14%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
           D AL +F     ++L  +N LI GL+                 F   +  F  +LR  VR
Sbjct: 65  DAALGLFRRMPSRDLASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVR 124

Query: 127 PNRLTYPF-----------VSKSVASLSLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMY 174
              L               VS +V    LL  GR      +     + D      +   Y
Sbjct: 125 HGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGY 184

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
            Q G+   A  +FDE P++N    V+ W  +I+G ++ G +  A +LF +MP++N  SW 
Sbjct: 185 CQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWT 240

Query: 235 SLIDGFMRKGDLKKAGELFEQMPE---------------KGVV----------------S 263
           +++ G+++ G ++ A ELF  MPE               +G+V                +
Sbjct: 241 AMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGT 300

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W+AMI  + QN    +AL+ F +ML  GVR N  +V+S L+ CA +  L+ G  VH  + 
Sbjct: 301 WSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAML 360

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
              F +     +AL+ MY KCGN++ A  VF   + KD++ W +MI G A HG  EQA+ 
Sbjct: 361 RCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALG 420

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F  M  +G  PDG  ++  LTAC Y+G+VK     F+SM  +  I P  +H++ +V+LL
Sbjct: 421 IFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLL 480

Query: 444 SRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYV 475
            R G   + +   +N                            +  KLL+L+P +   YV
Sbjct: 481 GRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGNAGPYV 540

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEIH 532
           LLS+IY + GRW+D +++R  +  R++ K PG S+IE +  VH F +G    H     I 
Sbjct: 541 LLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTSGDVLAHPEHAAIL 600

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
             LE +     E GY     +VLH+I EE K  +L  HSE+ A+A+GL++   G  I+++
Sbjct: 601 RILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYGLLKIPEGMPIRVM 660

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K L +CGDCHS +K  +KI+ REI+LRD  RFH+FKDG CSCRDYW
Sbjct: 661 KNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 101/220 (45%), Gaps = 17/220 (7%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A ++F+    ++   ++ +I+   +N      +S F  ML   VRPN  +   +   
Sbjct: 283 VDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTV 342

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A+L++L  GR +H  +++   + D F    L  MY++ G    A +VF     K+    
Sbjct: 343 CAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKD---- 398

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           +++WN +I G ++ G   +A+ +F      GM P  +  +++  +      G +K+  E+
Sbjct: 399 IVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSP--DGITYIGALTACSYTGKVKEGREI 456

Query: 253 FEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           F  M        G   ++ M++   ++G  E+A  +   M
Sbjct: 457 FNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNM 496



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 95/223 (42%), Gaps = 14/223 (6%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N  I   ++ G +  A   F  MP +  AS+ +L+ G+ R      A  LF +MP + + 
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           S+ A+I+G S   +     A     +        FT  S L    + G L   +R+   +
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFT--SLLRGYVRHGLLADAIRLFQQM 138

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +      +   L+D     G +  A  +F E  ++D++ WTAM+ G    GR  +A 
Sbjct: 139 PERNHVSYTVLLGGLLD----AGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEAR 194

Query: 383 QYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSM 423
             F +M      P   V  + A+++    +G+V LA   F+ M
Sbjct: 195 ALFDEM------PKRNVVSWTAMISGYAQNGEVNLARKLFEVM 231


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  340 bits (873), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 211/699 (30%), Positives = 355/699 (50%), Gaps = 74/699 (10%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   A+A    ++S+  P N+ T   ++ +          R++HA +    L   S +  
Sbjct: 247 RTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAAL----LKCGSELNI 302

Query: 68  Q---LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           Q   L+   + +  +D AL +F     K+   +N ++    +NS +   I  F  ML+  
Sbjct: 303 QCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHG 362

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            +P+      +S ++  LS L+ GR  H   +K  +  D  V   L DMY++ G    + 
Sbjct: 363 FQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSA 422

Query: 185 KVFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRK 217
           KVF+    ++                           + E +++ +++I    +     K
Sbjct: 423 KVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLK 482

Query: 218 AVELFGMMPKKNVASWV-------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           ++ L   +    + + +        LID +   G+   +  LF+++ +K +VSWT+MIN 
Sbjct: 483 SISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINC 542

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            + NG    A+ +F +M  A ++ +   +VS L A A + +L  G +VH ++   +F ++
Sbjct: 543 CTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIE 602

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
           G + ++LVDMY+ CG++  A  VF   K KD++ WTAMI    +HG  +QAI  FK+M+ 
Sbjct: 603 GPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQ 662

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           +G  PD   FLA+L AC +S  V+   ++ D M   Y ++P  +H+  VV++L R GQ  
Sbjct: 663 TGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTE 722

Query: 451 QGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYA 482
           + Y+  +                             +  KLL+L+P +P +Y+L+SN++A
Sbjct: 723 EAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFA 782

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMA 540
             G+W +    RT M  R ++K+P  S+IE+  ++H F +G   H+ ++ IH KL +I  
Sbjct: 783 EMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITE 842

Query: 541 G-AREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              RE GY+  T +VLH+  +EEK + L  HSE++A+AFGLI T PG  I+I K L +CG
Sbjct: 843 MLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCG 902

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCH   K  SK+ +R+IV+RD  RFH+F  G+CSC D+W
Sbjct: 903 DCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 145/336 (43%), Gaps = 70/336 (20%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV---EYDAFVRVHLADMYVQLGKTRGA 183
           P R  Y +V   VA+    + GR +H   V +G    + D F+   L  MY + G+   A
Sbjct: 55  PAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDA 114

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---------PKKNVASWV 234
            ++F+  P +    +V  WN L+      G   +A+ ++G M         P     + V
Sbjct: 115 RRLFNGMPAR----TVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASV 170

Query: 235 ---------------------------------SLIDGFMRKGDLKKAGELFE--QMPEK 259
                                            +LI  + + G L  A  +FE  Q   +
Sbjct: 171 LKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDAR 230

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            V SW ++++G  QNG   +ALA+F  M  AG   N +T V+ L  CA++G L  G  +H
Sbjct: 231 DVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELH 290

Query: 320 NY---------ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
                      I CN          AL+ MYAK G +++A  VFG+  EKD ++W +M+ 
Sbjct: 291 AALLKCGSELNIQCN----------ALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLS 340

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
               +  Y +AI +F +M+  G +PD    +++ +A
Sbjct: 341 CYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSA 376



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 114/517 (22%), Positives = 206/517 (39%), Gaps = 57/517 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILH---NLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           ++ L+ +  +  + RQ+HA  +     N      + T+L+        +D A  +F+   
Sbjct: 63  VLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMP 122

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP----NRLTYPFVSKSVASLSLLS 146
            + +  +N L+     +      +  +  M R S  P    +  T   V K+  +     
Sbjct: 123 ARTVFSWNALVGAYLSSGSAGEAMRVYGAM-RASAAPGSAPDGCTLASVLKACGAEGDGR 181

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G  +H L VK G++    V   L  MY + G    A +VF+    +  +  V  WN ++
Sbjct: 182 CGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWL--QQDARDVASWNSVV 239

Query: 207 NGCSKIGYLRKAVELF-GM----MPKKNVASWV--------------------------- 234
           +GC + G   +A+ LF GM     P  +  S                             
Sbjct: 240 SGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSE 299

Query: 235 ------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 +L+  + + G +  A  +F Q+ EK  +SW +M++ + QN    +A+  F +ML
Sbjct: 300 LNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEML 359

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G + +   VVS  SA   +  L  G   H Y           +G  L+DMY KCG+IE
Sbjct: 360 QHGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIE 419

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            ++ VF     +D ++WT ++   A   R+ +A++   ++   G   D  +  +IL  C 
Sbjct: 420 CSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCC 479

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
               + L           Y I   +    +   L+   G+  + + +S N F +   ++ 
Sbjct: 480 GLKSISLLKQV-----HCYAIRNGLLDLILENRLIDIYGECGE-FDHSLNLFQR---VEK 530

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           K   S+  + N     GR      + T MQ+ +I+ D
Sbjct: 531 KDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPD 567


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 222/730 (30%), Positives = 359/730 (49%), Gaps = 130/730 (17%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           L   + +  Q +++H  II       + +   LI++ S   +I YA  +FD     N   
Sbjct: 14  LCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 97  FNVLIRGLAENSH------------------FQSCISHFVF-------------MLRLSV 125
           +N ++   +++                    + S IS +V              M++  V
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 126 -RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
              NR+T+  +   V+S   + LGR +H  IVK G     FV   L DMY ++G    A 
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVAS 193

Query: 185 KVFDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRK 217
           +VFDE  E+N                           K    + W  +I G  + G   +
Sbjct: 194 QVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAE 253

Query: 218 AVELFGMMPKK---------------------------------------NVASWVSLID 238
           A++LF  M ++                                       NV    +L+D
Sbjct: 254 AMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVD 313

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + +   ++ A  +F++M  K VVSWTAM+ G+ QNG +E+A+ +F  M   G+  +DFT
Sbjct: 314 MYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFT 373

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           + S +S+CA + +LE G + H     +       +  AL+ +Y KCG+IE ++ +F E  
Sbjct: 374 LGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMS 433

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D ++WTA++ G A  G+  + I  F++M+  G +PD   F+A+L+AC  +G V+    
Sbjct: 434 FRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQ 493

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQNSQNSF--- 460
           +F+SM  D+ I P   H+T +++L  R G+               DS G+    +S    
Sbjct: 494 YFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLY 553

Query: 461 ----------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                       LL+L P++P+ Y+LLS+IYAA+G+W +VA++R  M+ +  +K+PG+S+
Sbjct: 554 GNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSW 613

Query: 511 IEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALG 567
           I+    V+ F A       + +I+++LE +     E+GY+P    VLH++++ EK + L 
Sbjct: 614 IKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEKMKMLN 673

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLA+AFGL+    G  I++VK L +CGDCH+  KY SKISQREI++RD  RFH FK
Sbjct: 674 HHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVRFHLFK 733

Query: 627 DGTCSCRDYW 636
           DGTCSC D+W
Sbjct: 734 DGTCSCGDFW 743



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 11/240 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           ++ T   +IS   +  S ++  Q H Q ++  L +   ++  LI+      SI+ +  +F
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLF 429

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D  + ++   +  L+ G A+       I  F  ML   ++P+ +T+  V  + +   L+ 
Sbjct: 430 DEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVE 489

Query: 147 LGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G+     ++   G+   +     + D++ + G+   A    ++ P    S   + W  L
Sbjct: 490 RGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDS---IGWATL 546

Query: 206 INGC-----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++ C      +IG  + A E    +  +N A ++ L   +  KG      +L   M EKG
Sbjct: 547 LSSCRLYGNEEIG--KWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKG 604


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  340 bits (872), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 217/679 (31%), Positives = 347/679 (51%), Gaps = 84/679 (12%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKN 93
           I +  SS   KQ + +HA I+   L     I  T LI+  +  + ++ A   FD    K 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
           L  +N LI G + N   +  +  +  M+  S   ++P+ +T+     +   +  +S GR 
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGRE 184

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +    V SG   D+ V+  L +MY + G    A KVFD    + K+  V+ WN +I+G +
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFD----RLKNRDVIAWNTMISGYA 240

Query: 211 KIGYLRKAVELFGMM----PKKNVASWVSLI---------------------DGFMRK-- 243
           K G   +A+ELF  M    PK NV +++ L+                     DG+     
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 244 -------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                          L++A ++FE+M  + V++W  +I  + Q G+A+ AL +F QM   
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            V  N+ T+ + LSACA +GA   G  VH  I+         +  +L++MY +CG+++  
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF   ++K L++W+ +I   A HG     +++F +++  G   D    ++ L+AC + 
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHG 480

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGY-- 453
           G +K  +  F SM  D+ + P  +H   +V+LLSR G+               D+  +  
Sbjct: 481 GMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTS 540

Query: 454 -----------QNSQNSFTKLLQLKPKHPSSYV-LLSNIYAAEGRWKDVARVRTLMQRRS 501
                      + +     KL +L+ +   S V LLSN+YA  GRW DV + R    RR+
Sbjct: 541 LLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRRA 597

Query: 502 IKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
            +K+PG SYIE+N  VH F AG   H   + I ++++ +    ++ GY+P    VLHN+K
Sbjct: 598 ARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVK 657

Query: 560 EEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           EE++E + C HSEKLA+A+GLI T PGT + IVK L  C DCH+  K+ S+I  R+IV+R
Sbjct: 658 EEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVR 717

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D TRFH+F++G+CSC+DYW
Sbjct: 718 DSTRFHHFENGSCSCKDYW 736



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 175/378 (46%), Gaps = 48/378 (12%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+  AL++F      N   + +++   A N H++  + ++  M+   +RP+   +     
Sbjct: 7   SVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIG 66

Query: 138 SVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
             +S   L  G+ LH +I+++  +E+D  +   L  MY +      A K FDE  +K   
Sbjct: 67  VCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKK--- 123

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF---------GMMPK-------------------- 227
            +++ WN LI G S+ G  R A++++         GM P                     
Sbjct: 124 -TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQG 182

Query: 228 -----KNVASWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                + VAS          +LI+ + + G L+ A ++F+++  + V++W  MI+G+++ 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G A +AL +F +M     + N  T +  L+AC  +  LE G  +H  +  + +     IG
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIG 302

Query: 335 TALVDMYAKC-GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
             L++MY KC  ++E A  VF   + +D++TW  +I     +G+ + A+  FK+M     
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 394 EPDGTVFLAILTACWYSG 411
            P+      +L+AC   G
Sbjct: 363 APNEITLSNVLSACAVLG 380



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 154/310 (49%), Gaps = 15/310 (4%)

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASW-----VSLIDGFMRKGDLKKAGELFEQ 255
           ++ V I  CS    L++   L  M+ +  +  +      +LI  + R  DL+ A + F++
Sbjct: 60  MFVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDE 119

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD---AGVRANDFTVVSALSACAKVGAL 312
           M +K +V+W A+I G+S+NG+   AL ++  M+     G++ +  T  SAL AC  VG +
Sbjct: 120 MGKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
             G  +      + +     +  AL++MY+KCG++E+A  VF   K +D++ W  MI G 
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A  G   QA++ F++M  +  +P+   F+ +LTAC     ++        +R D + E  
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGY-ESD 298

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
           +    V++N+ ++    S   + ++  F +   ++ +   ++ +L   Y   G+ KD   
Sbjct: 299 LVIGNVLLNMYTKC---SSSLEEARQVFER---MRTRDVITWNILIVAYVQYGQAKDALD 352

Query: 493 VRTLMQRRSI 502
           +   MQ  ++
Sbjct: 353 IFKQMQLENV 362



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 4/174 (2%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +  A  +F  +     VSWT ++  F++NG   +AL  + +M+  G+R +    V A+
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 304 SACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
             C+    L+ G  +H  I           +GTAL+ MYA+C ++E A   F E  +K L
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMY---SGTEPDGTVFLAILTACWYSGQV 413
           +TW A+I G + +G +  A++ ++ M+     G +PD   F + L AC   G +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG++  A  VF   +  + ++WT ++   A +G Y +A+ Y+++M+  G  PDG +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 400 FLAILTACWYSGQVK 414
           F+  +  C  S  +K
Sbjct: 61  FVVAIGVCSSSKDLK 75



 Score = 38.9 bits (89), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 57/256 (22%), Positives = 107/256 (41%), Gaps = 43/256 (16%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT ++++S      + +Q + +HA I      A   +   L++  +   S+D  + +F
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                K+L  ++ LI   A++ H ++ + HF  +L+  +  + +T       V++LS  S
Sbjct: 425 AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTM------VSTLSACS 478

Query: 147 LGRGLHCLIVKSGVE-YDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
                H  ++K GV+ + + V  H LA  Y                           +  
Sbjct: 479 -----HGGMLKEGVQTFLSMVGDHGLAPDYRH-------------------------FLC 508

Query: 205 LINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAG----ELFEQMPEK 259
           +++  S+ G L  A  L   MP   +  +W SL+ G     D K+A     +LFE   E 
Sbjct: 509 MVDLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESED 568

Query: 260 GVVSWTAMINGFSQNG 275
              + T + N +++ G
Sbjct: 569 EHSTVTLLSNVYAEAG 584


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 213/679 (31%), Positives = 341/679 (50%), Gaps = 76/679 (11%)

Query: 27   NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            N  T T ++    +    K+ +++H  ++     +++ +   LI++      ++ A ++F
Sbjct: 469  NCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLF 528

Query: 87   DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            D  +  ++  +N +I G   N    + +  F+ ML L V  +  T   V  + A++  LS
Sbjct: 529  DELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLS 588

Query: 147  LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            LGR LH   VK+    +      L DMY + G   GA +VF     K    +++ W   I
Sbjct: 589  LGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF----VKMGDTTIVSWTSTI 644

Query: 207  NGCSKIGYLRKAVELFGMMPKK--------------------------NVASWV------ 234
                + G    A+ LF  M  K                          +V S+V      
Sbjct: 645  AAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG 704

Query: 235  -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                   +LI+ + + G +++A  +F ++P K +VSW  MI G+SQN    +AL +F  M
Sbjct: 705  SNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM 764

Query: 288  LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
                 + +D T+   L ACA + AL+ G  +H +I    +     +  ALVDMYAKCG +
Sbjct: 765  -QKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLL 823

Query: 348  EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
              A L+F    +KDL++WT MI G  +HG   +AI  F +M  +G EPD + F  IL AC
Sbjct: 824  VLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNAC 883

Query: 408  WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----- 462
             +SG +     FF+SMR +  +EP ++H+  VV+LL+R+G  S+ Y+  ++   K     
Sbjct: 884  SHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTI 943

Query: 463  -----------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                                   + +L+P +   YV+L+N+YA   +W++V ++R  MQ+
Sbjct: 944  WGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQK 1003

Query: 500  RSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
            R  K++PG S+IEV G  + F AG   H  AK I   L  +    + + Y     +VL N
Sbjct: 1004 RGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLIN 1063

Query: 558  IKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
              + ++E + C HSEK A+AFG++   PG T+++ K   +CGDCH + K+ SK ++REIV
Sbjct: 1064 EDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIV 1123

Query: 617  LRDT-RFHYFKDGTCSCRD 634
            LRD+ RFH+FKDG CSCRD
Sbjct: 1124 LRDSNRFHHFKDGLCSCRD 1142



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 187/413 (45%), Gaps = 44/413 (10%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++ L     S +  +++H+ II + +     +  +L+        +     IFD      
Sbjct: 375 VLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           + ++N+L+   A+  +F+  +S F  M +L V  N  T+  V K  A+L  +   + +H 
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 494

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K G   +  V   L   Y + G    A  +FDE  E +    V+ WN +INGC   G
Sbjct: 495 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPD----VVSWNSMINGCVVNG 550

Query: 214 YLRKAVELFGMMPKKNV-----------ASWV---------------------------- 234
           +    +E+F  M    V            +W                             
Sbjct: 551 FSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSN 610

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + + G+L  A E+F +M +  +VSWT+ I  + + G    A+ +F +M   GVR 
Sbjct: 611 TLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRP 670

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + +TV S + ACA   +L+ G  VH+Y+  N  G    +  AL++MYAKCG++E A LVF
Sbjct: 671 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +   KD+++W  MI G + +    +A++ F  M     +PD      +L AC
Sbjct: 731 SKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPAC 782



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 145/322 (45%), Gaps = 43/322 (13%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           +Y  V +  A    L  G+ +H +I+ +G+  D  +   L  MYV  G      K+FD  
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFD-- 428

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------------------- 227
             K  ++ V LWN+L++  +KIG  R++V LF  M K                       
Sbjct: 429 --KIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKV 486

Query: 228 ----------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                            N A   SLI  + + G ++ A  LF+++ E  VVSW +MING 
Sbjct: 487 KECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGC 546

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
             NG +   L +F QML  GV  +  T+VS L A A +G L  G  +H +     F  + 
Sbjct: 547 VVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEV 606

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
                L+DMY+KCGN+  A+ VF +  +  +++WT+ I      G Y  AI  F +M   
Sbjct: 607 VFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSK 666

Query: 392 GTEPDGTVFLAILTACWYSGQV 413
           G  PD     +I+ AC  S  +
Sbjct: 667 GVRPDIYTVTSIVHACACSSSL 688



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 126/270 (46%), Gaps = 8/270 (2%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  ++  GDL +  ++F+++    V  W  +++ +++ G   +++++F +M   GV  N
Sbjct: 410 LVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGN 469

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            +T    L   A +G ++   RVH Y+    FG   A+  +L+  Y K G +E+A  +F 
Sbjct: 470 CYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFD 529

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E  E D+++W +MI G  ++G     ++ F +M+  G E D T  +++L A    G + L
Sbjct: 530 ELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSL 589

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475
                       F E  V  +T ++++ S+ G       N   +    +++      S+ 
Sbjct: 590 GRALHGFGVKACFSEEVVFSNT-LLDMYSKCG-------NLNGATEVFVKMGDTTIVSWT 641

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                Y  EG + D   +   MQ + ++ D
Sbjct: 642 STIAAYVREGLYSDAIGLFDEMQSKGVRPD 671



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 9/199 (4%)

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           A IN F + G+   A+ +  +     +  N +   S L  CA+  +LE G RVH+ I  N
Sbjct: 341 AKINKFCEMGDLRNAIELLTKSKSYELGLNSY--CSVLQLCAEKKSLEDGKRVHSVIISN 398

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              +  A+G  LV MY  CG++     +F +     +  W  ++   A  G + +++  F
Sbjct: 399 GISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLF 458

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF-DYFIEPSVKHHTVVVNLLS 444
           KKM   G   +   F  +L      G+VK      +  R   Y ++     +T VVN L 
Sbjct: 459 KKMQKLGVVGNCYTFTCVLKCFAALGKVK------ECKRVHGYVLKLGFGSNTAVVNSLI 512

Query: 445 RVGQDSQGYQNSQNSFTKL 463
                  G +++ N F +L
Sbjct: 513 AAYFKFGGVESAHNLFDEL 531


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 309/590 (52%), Gaps = 63/590 (10%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  A S+F+    K   ++N +I G   +         F  M+   V  +  T+  V  +
Sbjct: 244 VGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVLSA 303

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A++ L + G+ +H  I++    +                            PE     +
Sbjct: 304 CANVGLFAHGKSVHGQIIRLQPNF---------------------------VPEA----A 332

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           + + N L+   SK G +  A  +F  M  K+V SW +++ G++    L KA E+FE+MP 
Sbjct: 333 LPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEMPY 392

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K  +SW  M++G+   G AE AL +F +M    V+  D+T   A++AC ++GAL+ G ++
Sbjct: 393 KNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGALKHGKQL 452

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H +I    F    + G AL+ MYA+CG ++ A L+F      D ++W AMI  L  HG  
Sbjct: 453 HGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHG 512

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +A++ F +M+  G  PD   FL +LTAC +SG V     +F+SM+ D+ I P   H+T 
Sbjct: 513 REALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTR 572

Query: 439 VVNLLSRVGQDSQ----------------------GYQNSQN------SFTKLLQLKPKH 470
           +++LL R G+  +                      G + S +      +  +L ++ P+H
Sbjct: 573 LIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQLFKMTPQH 632

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLA 528
             +Y+LLSN Y+A G W D ARVR LM+ R +KK+PG S+IE    VH F  G   H  A
Sbjct: 633 DGTYILLSNTYSAAGCWVDAARVRKLMRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEA 692

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTT 587
            E++  LE + A  R+ GY+P T+ VLH+++  +KE  L  HSE+LA+ FGL+   PG T
Sbjct: 693 HEVYKFLEMVGAKMRKLGYVPDTKVVLHDMEPHQKEHILFAHSERLAVGFGLLNLPPGAT 752

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + ++K L IC DCH+ + + SK   REIV+RD  RFH+FKDG CSC +YW
Sbjct: 753 VTVLKNLRICDDCHAAIMFMSKAVGREIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 184/396 (46%), Gaps = 54/396 (13%)

Query: 47  LRQIHAQIILHNLFASSRI---------TTQLISSASLHKSIDYALSIFDHFTP--KNLH 95
           LR IH   +  +L A++ +          T L+++ +    +  A+S FD   P  ++  
Sbjct: 63  LRLIHLYTLSRDLPAAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTV 122

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGR--GLH 152
           + N +I   A  SH    ++ F  +L   S+RP+  ++  +  +   L  +S+     LH
Sbjct: 123 LHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLH 182

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C ++KSG      V   L  +Y++            E+PE                    
Sbjct: 183 CSVLKSGAGGALSVCNALVALYMKC-----------ESPEAT------------------ 213

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
              R A ++   MP K+  +W +++ G++R+GD+  A  +FE++  K  V W AMI+G+ 
Sbjct: 214 ---RDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAMISGYV 270

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS--CNDFGLK 330
            +G A +A  +F +M+   V  ++FT  S LSACA VG    G  VH  I     +F  +
Sbjct: 271 HSGMAVEAFELFRRMVLERVPLDEFTFTSVLSACANVGLFAHGKSVHGQIIRLQPNFVPE 330

Query: 331 GA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
            A  +  ALV  Y+KCGNI  A  +F     KD+++W  ++ G       ++A++ F++M
Sbjct: 331 AALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVEVFEEM 390

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
            Y     +   ++ +++   + G  + AL  F+ MR
Sbjct: 391 PYK----NELSWMVMVSGYVHGGFAEDALKLFNKMR 422



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/297 (21%), Positives = 117/297 (39%), Gaps = 57/297 (19%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P NN     +++      +    R+I   + L ++ + + I +  + S+ L K+++    
Sbjct: 334 PVNNA----LVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAVE---- 385

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F+    KN   + V++ G       +  +  F  M   +V+P   TY     +   L  
Sbjct: 386 VFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELGA 445

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G+ LH  IV+ G E        L  MY + G  + A  +F   P  +     + WN 
Sbjct: 446 LKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDS----VSWNA 501

Query: 205 LINGCSKIGYLRKAVEL------------------------------------------F 222
           +I+   + G+ R+A+EL                                          F
Sbjct: 502 MISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDF 561

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-WTAMINGFSQNGEAE 278
           G++P ++   +  LID   R G + +A +L + MP +   S W A+++G   +G+ E
Sbjct: 562 GIIPGED--HYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDME 616


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/573 (33%), Positives = 298/573 (52%), Gaps = 63/573 (10%)

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N +I G  ++         F  M+   + P+  T+  +  + A+      G+ +H   
Sbjct: 263 VWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSLLSACANAGFFLHGKSVH--- 319

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
                    F+R+                      P+     ++ + N L+   SK G +
Sbjct: 320 -------GQFIRLQ---------------------PDFVPEAALPVNNALVTLYSKSGKI 351

Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
             A ++F  M  K+V SW +++ G++  G L  A  +F++MP K  +SW  M++G+   G
Sbjct: 352 AVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGG 411

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
            AE AL +F QM    V+  D+T   A++AC ++GAL+ G ++H ++    F    + G 
Sbjct: 412 LAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGN 471

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+ MYA+CG ++ A LVF      D ++W AMI  L  HG   +A++ F +M+  G  P
Sbjct: 472 ALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYP 531

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--- 452
           D   FL ILTAC ++G V     +F+SM  D+ I P   H+  +++LL R G+  +    
Sbjct: 532 DRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDL 591

Query: 453 -------------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                     +    +  +L ++ P+H  +Y+LLSN Y+A GRW
Sbjct: 592 IKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRW 651

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ 545
            D ARVR LM+ R +KK+PG S+IEV   VH F  G   H  A E++  LE + A  R+ 
Sbjct: 652 VDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKL 711

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY+P T++ L ++   EKE  L  HSE+LA++FGL++   G T+ ++K L ICGDCH+ M
Sbjct: 712 GYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAM 771

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            + S+   REIV+RD  RFH+FKDG CSC +YW
Sbjct: 772 MFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 167/372 (44%), Gaps = 52/372 (13%)

Query: 66  TTQLISSASLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
            T L+S+ ++   +  + + FD      ++  + N +I   A  S     +S F  +L  
Sbjct: 92  ATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRSLLAS 151

Query: 124 --SVRPNRLTYPFVSKSVASLSLLSLGR--GLHCLIVKSGVEYDAFVRVHLADMYVQL-- 177
             S+RP+  ++  +  +V  +  L++     LHC + K G      V   L  +Y++   
Sbjct: 152 DDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDA 211

Query: 178 -GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL 236
            G TR A KV DE                                   MP+K+  +W ++
Sbjct: 212 PGVTRDARKVLDE-----------------------------------MPEKDELTWTTI 236

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           + G +RKGD+  A   FE++  +  V W AMI+G+ Q+G   +A  +F +M+   +  ++
Sbjct: 237 VVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDE 296

Query: 297 FTVVSALSACAKVGALEAGVRVH-NYISCN-DFGLKGA--IGTALVDMYAKCGNIEAASL 352
           FT  S LSACA  G    G  VH  +I    DF  + A  +  ALV +Y+K G I  A+ 
Sbjct: 297 FTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATK 356

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F     KD+++W  ++ G    G  + A + FK+M Y         ++ +++   + G 
Sbjct: 357 IFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSE----LSWMVMVSGYVHGGL 412

Query: 413 VKLALNFFDSMR 424
            + AL  F+ MR
Sbjct: 413 AEDALKLFNQMR 424


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  340 bits (871), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 213/580 (36%), Positives = 306/580 (52%), Gaps = 65/580 (11%)

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
           P+++ + + LIR L+ ++     +  +  +LR  + P   T P + KS+A LS    G  
Sbjct: 34  PRSVELHDALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMA-LSPAVPGAA 92

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN-GC 209
           +  L V +                V+LG  R                 VL+ N LI    
Sbjct: 93  VLALTVHTHA--------------VKLGLDR----------------FVLVSNALIRVHA 122

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
             +G L   + L       + +++ +LI  + R G L  A  LF++MP +  VSW+AM+N
Sbjct: 123 GFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVN 182

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+ Q G+  +AL +F +M    VR +D  +V  L+ACA+ GALE G  VH Y+  +   +
Sbjct: 183 GYVQAGDGREALRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKI 242

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
               GTALVDMY+KCG ++ A  VF   + K++L WT MI GLA+HGR  +A+  F +M 
Sbjct: 243 NLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQME 302

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
            SG  PD   F+ +L AC ++G V      FDSM   Y I+P ++H+  +V+LL+R G  
Sbjct: 303 SSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFL 362

Query: 450 SQGYQNSQN-----------------SFTKLLQ-----------LKPKHPSSYVLLSNIY 481
            +  +  Q                   F K ++           L+P    +YVLLSNIY
Sbjct: 363 YEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIY 422

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIM 539
           AA GR      +R LM+ + + K PG S +EVNG +H+F  G   H   K+I SK  +I 
Sbjct: 423 AASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEID 482

Query: 540 AGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
              R E+GY+P  + VL +I +EEKE AL  HSEKLA+AF LI  +    I+I K L +C
Sbjct: 483 TRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVC 542

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH + K  SK+  REIV+RD TRFH FK+GTCSC+DYW
Sbjct: 543 HDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKDYW 582



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI++ +    +  A ++FD    +N   ++ ++ G  +    +  +  F  M    VRP+
Sbjct: 149 LITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVRPD 208

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
                 V  + A    L  G+ +H  +   G++ + F    L DMY + G+ + A  VF+
Sbjct: 209 DTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFE 268

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKG 244
               KN    VL W  +I G +  G   +AV LF  M    +     +++ ++      G
Sbjct: 269 RMQYKN----VLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAG 324

Query: 245 DLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
            + K  ELF+ M  K      +  +  M++  ++NG   +A  M  +M
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKM 372



 Score = 43.5 bits (101), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 45/242 (18%), Positives = 100/242 (41%), Gaps = 8/242 (3%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P + +    +++      + +Q + +H  +  H +  +    T L+   S    +  A+
Sbjct: 206 RPDDTVL-VGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAM 264

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F+    KN+  +  +I+GLA +      +  F  M    +RP+ + +  V  +     
Sbjct: 265 DVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAG 324

Query: 144 LLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           L+  GR L   ++ K G++        + D+  + G    A ++  + P +  +   L+W
Sbjct: 325 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDA---LIW 381

Query: 203 NVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
             L+ GC     + +     + + ++      ++V L + +   G    A E+   M EK
Sbjct: 382 GALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREK 441

Query: 260 GV 261
           GV
Sbjct: 442 GV 443


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 202/637 (31%), Positives = 319/637 (50%), Gaps = 105/637 (16%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK--- 157
           +R    ++ F+  IS ++ M     RP+   +P V K+V+ L  L  G  +H   VK   
Sbjct: 64  LRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGY 123

Query: 158 ------------------SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                              G+    F    L  MY +LG+   +  +F+   +++    +
Sbjct: 124 GSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRD----M 179

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----------------PK----------KNVASW 233
           + WN +I+  S+     +A+  F +M                P           K + ++
Sbjct: 180 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 239

Query: 234 V--------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
           V              +L+D +     ++    +F+ +  + +  W AMI+G+++NG  EK
Sbjct: 240 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 299

Query: 280 ALAMFFQMLD-AGVRANDFTVVSALSACA-KVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           AL +F +M+  AG+  N  T+ S + AC   + A+  G  +H Y   N       +G+AL
Sbjct: 300 ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSAL 359

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG----- 392
           VDMYAKCG +  +  VF E   K+++TW  +I    +HG+ E+A++ FK M+        
Sbjct: 360 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 419

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +P+   F+ +  AC +SG +   LN F  M+ D+ +EP+  H+  VV+LL R GQ  + 
Sbjct: 420 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 479

Query: 453 Y--------------------------QN---SQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
           Y                          QN    + +   LL L+P   S YVLLSNIY++
Sbjct: 480 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS 539

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
            G W     VR  M++  +KK+PG S+IE    VH+F AG   H  ++++H  LE +   
Sbjct: 540 AGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEK 599

Query: 542 AREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            R++GY+P T  VLHN+ E+++E L C HSEKLA+AFG++ T PGTTI++ K L +C DC
Sbjct: 600 MRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDC 659

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           H+  K+ SKI +REI++RD  RFH+FK+GTCSC DYW
Sbjct: 660 HAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 157/357 (43%), Gaps = 37/357 (10%)

Query: 48  RQIHAQIILHN-LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           ++IHA ++ +N L  +S + + L+      + ++    +FDH   + + ++N +I G A 
Sbjct: 234 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 293

Query: 107 NSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS-VASLSLLSLGRGLHCLIVKSGVEYDA 164
           N   +  +  F+ M++++ + PN  T   V  + V SL+ ++ G+ +H   +++ +  D 
Sbjct: 294 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDI 353

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            V   L DMY + G    + +VF+E P KN    V+ WNVLI  C   G   +A+ELF  
Sbjct: 354 TVGSALVDMYAKCGCLNLSRRVFNEMPNKN----VITWNVLIMACGMHGKGEEALELFKN 409

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           M                    + +AG   E  P +  V++  +    S +G   + L +F
Sbjct: 410 M--------------------VAEAGRGGEAKPNE--VTFITVFAACSHSGLISEGLNLF 447

Query: 285 FQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA----IGTALVD 339
           ++M  D GV          +    + G LE    + N +   +F   GA    +G   + 
Sbjct: 448 YRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPA-EFDKVGAWSSLLGACRIH 506

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
              + G + A +L+  E          + I+  A  G + +A++  K M   G + +
Sbjct: 507 QNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSA--GLWNKAMEVRKNMRQMGVKKE 561



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 79/172 (45%), Gaps = 21/172 (12%)

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           P +   SW   +   +++ +  +A++ + +M  +G R ++F   + L A + +  L+ G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 317 RVHN---------------------YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           ++H                      Y  C   G K     AL+ MYAK G ++ +  +F 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
              ++D+++W  MI   +   R+ +A+ +F+ M+  G E DG    ++L AC
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPAC 224



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 55/250 (22%), Positives = 111/250 (44%), Gaps = 19/250 (7%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P+     + + + +HS  +  + ++IHA  I + L +   + + L+   +    ++ +  
Sbjct: 315 PNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRR 374

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-----PNRLTYPFVSKSV 139
           +F+    KN+  +NVLI     +   +  +  F  M+  + R     PN +T+  V  + 
Sbjct: 375 VFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAAC 434

Query: 140 ASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           +   L+S G  L + +    GVE  +     + D+  + G+   A+++ +  P   + + 
Sbjct: 435 SHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPA--EFDK 492

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVAS-WVSLIDGFMRKGDLKKAGE 251
           V  W+ L+  C     + + VEL  +  K       NVAS +V L + +   G   KA E
Sbjct: 493 VGAWSSLLGACR----IHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAME 548

Query: 252 LFEQMPEKGV 261
           + + M + GV
Sbjct: 549 VRKNMRQMGV 558


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 192/542 (35%), Positives = 287/542 (52%), Gaps = 74/542 (13%)

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           V Y+  +  H A      G   GA +VF   P K+    V  WN +++G SK G   +A 
Sbjct: 78  VSYNTLLSCHFA-----CGDIDGARRVFSTMPVKD----VTSWNTMVSGLSKNGASEEAA 128

Query: 220 ELFGMMPKKNVASW--------------------------------VSLIDGFMRKGDLK 247
            +F +MP +N  SW                                 +++ G+M  G+++
Sbjct: 129 AMFRIMPVRNAVSWNAMVAALACSGDMGAAEDLFRNAPEKTDAILWTAMVSGYMDTGNVQ 188

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSAC 306
           KA E F  MP + +VSW A++ G+ +N  A+ AL +F  M+ D+ V+ N  T+ S L  C
Sbjct: 189 KAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGC 248

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           + + AL  G +VH +           +GT+L+ MY KCG++  A  VF E   KD++ W 
Sbjct: 249 SNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWN 308

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI G A HG   QAI+ F+KM   G  PD    LA+LTAC ++G     +  F++M+  
Sbjct: 309 AMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEA 368

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQN 458
           Y IEP + H++ +V+LL R G   +                          Y+N   ++ 
Sbjct: 369 YKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEF 428

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  KL++  P++  +YV L+NIYA   +W DV+RVR  M+  ++ K PG+S++E+ G  H
Sbjct: 429 AARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIKGVRH 488

Query: 519 RFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLAL 575
            F +    H     IH KL+ +    +  GY+P  ++ LH++++  K + L  HSEKLA+
Sbjct: 489 EFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSEKLAI 548

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGLI T+PG T++I K L ICGDCH+  K  SKI  REI+LRD TRFH+F+ G CSC D
Sbjct: 549 AFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGD 608

Query: 635 YW 636
           YW
Sbjct: 609 YW 610



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 117/238 (49%), Gaps = 17/238 (7%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-GYLR--KAVELFGMMPKKNVA 231
           V+ G   GA + F  T  K  +     +N L+ G +K  G +R   A  LF  +P  +  
Sbjct: 23  VRRGDLAGAEEAFASTQLKTTTT----YNCLLAGYAKASGLIRLADARRLFDSIPHPDTV 78

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDA 290
           S+ +L+      GD+  A  +F  MP K V SW  M++G S+NG +E+A AMF  M +  
Sbjct: 79  SYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAAMFRIMPVRN 138

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            V  N   +V+AL+    +GA E   R  N     D      + TA+V  Y   GN++ A
Sbjct: 139 AVSWN--AMVAALACSGDMGAAEDLFR--NAPEKTD----AILWTAMVSGYMDTGNVQKA 190

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTAC 407
              FG    ++L++W A++ G   + R + A++ FK M+  S  +P+ +   ++L  C
Sbjct: 191 MEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSVLLGC 248



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 104/231 (45%), Gaps = 14/231 (6%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-V 125
           T ++S      ++  A+  F     +NL  +N ++ G  +NS     +  F  M+  S V
Sbjct: 175 TAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIV 234

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           +PN  T   V    ++LS L  GR +H   +K  +  +  V   L  MY + G    A K
Sbjct: 235 QPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACK 294

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-SWVSL---IDGFM 241
           VFDE   K+    ++ WN +I+G ++ G   +A++LF  M  + V   W++L   +   +
Sbjct: 295 VFDEMSTKD----IVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACI 350

Query: 242 RKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
             G      + FE M      E  +  ++ M++   + G  E+A+ M   M
Sbjct: 351 HTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSM 401


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 213/638 (33%), Positives = 339/638 (53%), Gaps = 87/638 (13%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVS 136
            ++ A  +FD    KN+  + ++I  LA+  +    I  F+ ML  S   P+R T   + 
Sbjct: 210 DLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLI 269

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
              A +  LSLG+ LH  +++SG+  D  V   L DMY + G  + A KVFD   E N  
Sbjct: 270 SVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHN-- 327

Query: 197 ESVLLWNVLINGCSKIG--YLRKAVELF-------GMMPKKNVASWV------------- 234
             V+ W  L+NG  + G  Y R+A+ +F       G+ P     S V             
Sbjct: 328 --VMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFG 385

Query: 235 --------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM----ING 270
                                L+  + + G ++ A + F+ + EK +VS T +    +  
Sbjct: 386 EQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKD 445

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           F+ N  +E+ L    + + +GV +  FT  S LS  A +G +  G ++H  +    F   
Sbjct: 446 FNLN--SEQDLDREVEYVGSGVSS--FTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTD 501

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
            ++  AL+ MY+KCGN EAA  VF + ++ +++TWT++I G A HG   +A++ F  M+ 
Sbjct: 502 LSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLE 561

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           +G +P+   ++A+L+AC + G +  A   F SMR ++ I P ++H+  +V+LL R G  S
Sbjct: 562 TGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLS 621

Query: 451 QGYQ--NS--------------------------QNSFTKLLQLKPKHPSSYVLLSNIYA 482
           +  +  NS                          +++   +L+ +P  P++Y+LLSN+YA
Sbjct: 622 EAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYA 681

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMA 540
            EGRW+DVA +R  M+++ I K+ G S+IEV   VH+F  G   H  A++I+ KL+++  
Sbjct: 682 TEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELAL 741

Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
             +  GY+P T++VLH++++E KE+ L  HSEKLA+AF LI T     I++ K L +CGD
Sbjct: 742 KIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGD 801

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CH+ +KY S +S REIV+RD  RFH+ KDGTCSC DYW
Sbjct: 802 CHTAIKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 122/218 (55%), Gaps = 12/218 (5%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMRK---GDLKKAGELF 253
           +  +I  C K G+ +  + LFG + K      +V     LID F++     DL+ A ++F
Sbjct: 159 FTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVF 218

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGAL 312
           ++M EK VV+WT MI   +Q G  ++A+ +F +ML  +G   + FT+   +S CA++  L
Sbjct: 219 DKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFL 278

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG- 371
             G  +H+++  +   L   +G +LVDMYAKCG ++ A  VF   +E ++++WTA++ G 
Sbjct: 279 SLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGY 338

Query: 372 LAIHGRYE-QAIQYFKKMMYS-GTEPDGTVFLAILTAC 407
           +   G YE +A++ F  M+   G  P+   F  +L AC
Sbjct: 339 VRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKAC 376



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 107/406 (26%), Positives = 180/406 (44%), Gaps = 58/406 (14%)

Query: 16  TTNIKSSHKPSNN--ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSA 73
           T N+  +    NN  IT + ++     + +T   + +H ++   NL   + +   LI+  
Sbjct: 38  TLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNLPLDTLLLNSLITLY 97

Query: 74  SLHKSIDYALSIFDHF--TPKNLHIFNVLIRGLAENSHFQSCISHF-VFMLRLSVRPNRL 130
           S       A SIF     + +++  ++ +I   A N +    +  F   +L+  V PN  
Sbjct: 98  SKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEY 157

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQ---LGKTRGAFK 185
            +  V ++         G  L   ++K+G  +D+ V V   L DM+V+   L     A K
Sbjct: 158 CFTAVIRACLKGGFFKTGLCLFGFVLKTGY-FDSHVCVGCELIDMFVKGCSLADLESARK 216

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPK----------- 227
           VFD+  EKN    V+ W ++I   ++ GY  +A++LF       G +P            
Sbjct: 217 VFDKMREKN----VVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVC 272

Query: 228 ---------KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                    K + SWV             SL+D + + G +++A ++F+ M E  V+SWT
Sbjct: 273 AEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWT 332

Query: 266 AMINGFSQNGEA--EKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           A++NG+ + G     +A+ MF  M L  GV  N FT    L ACA +   + G +VH   
Sbjct: 333 ALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQT 392

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
                     +G  LV +YAK G +E+A   F    EK+L++ T +
Sbjct: 393 IKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSETVV 438



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 187/427 (43%), Gaps = 46/427 (10%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           + S + P +  T T +IS+          +++H+ +I   L     +   L+   +    
Sbjct: 254 VSSGYVP-DRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGL 312

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENS--HFQSCISHFVFML-RLSVRPNRLTYPFV 135
           +  A  +FD     N+  +  L+ G       + +  +  F  ML +  V PN  T+  V
Sbjct: 313 VQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGV 372

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN- 194
            K+ ASL     G  +H   +K G+     V   L  +Y + G+   A K FD   EKN 
Sbjct: 373 LKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNL 432

Query: 195 KSESVL------------------------------LWNVLINGCSKIGYLRKAVELFGM 224
            SE+V+                               +  L++G + IG + K  ++  M
Sbjct: 433 VSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAM 492

Query: 225 MPKKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           + K    + +S    LI  + + G+ + A ++F  M +  V++WT++INGF+++G A KA
Sbjct: 493 VVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKA 552

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIG--TAL 337
           L +F+ ML+ GV+ ND T ++ LSAC+ VG ++   +  ++ S  D  G+   +     +
Sbjct: 553 LELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWK--HFTSMRDNHGIVPRMEHYACM 610

Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           VD+  + G + EA   +     + D L W   +    +H R  +  ++  KM+      D
Sbjct: 611 VDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVH-RNTKLGEHAAKMILEREPHD 669

Query: 397 GTVFLAI 403
              ++ +
Sbjct: 670 PATYILL 676



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 99/181 (54%), Gaps = 8/181 (4%)

Query: 235 SLIDGFMRKGDLKKAGELFEQM--PEKGVVSWTAMINGFSQNGEAEKALAMFFQ-MLDAG 291
           SLI  + +  D   A  +F+ M   ++ VVS++++I+ F+ N    KA+ MF Q +L  G
Sbjct: 92  SLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDG 151

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAK-C--GNI 347
           V  N++   + + AC K G  + G+ +  ++     F     +G  L+DM+ K C   ++
Sbjct: 152 VYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADL 211

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTA 406
           E+A  VF + +EK+++TWT MI  LA +G  ++AI  F +M+  SG  PD      +++ 
Sbjct: 212 ESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISV 271

Query: 407 C 407
           C
Sbjct: 272 C 272


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 209/683 (30%), Positives = 346/683 (50%), Gaps = 83/683 (12%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T T ++ L  +       R +HAQ+    L + S  +T L +     +    A  +FD  
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKSVASLSLLSL 147
             ++   +N ++ G A N    S +   V M       RP+ +T   V  + A    L  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
            R +H   +++G++    V   + D Y + G    A  VFD  P +N     + WN +I+
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNS----VSWNAMID 193

Query: 208 G-----------------------------------CSKIGYLRKAVELFGMMPKKNVAS 232
           G                                   C ++GYL +   +  ++ +  ++S
Sbjct: 194 GYADNGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSS 253

Query: 233 WVSLIDGFM------RKGDLKKAGELFEQMPEKGV-VSWTAMINGFSQNGEAEKALAMFF 285
            VS+ +  +      ++ DL  A ++F ++  K   +SW AMI GF+QN   E A  +F 
Sbjct: 254 NVSVTNALITTYAKCKRADL--AAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFA 311

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M    VR + FT+VS + A A +        +H Y   +       + TAL+DMY+KCG
Sbjct: 312 RMQLENVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCG 371

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +  A  +F   +++ ++TW AMI G   HG  + A++ F++M  +G+ P+ T FL++L 
Sbjct: 372 RVSIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLA 431

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------ 453
           AC ++G V     +F SM+ DY +EP ++H+  +V+LL R G+  + +            
Sbjct: 432 ACSHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGI 491

Query: 454 ----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                           + ++ S   + +L P+    +VLL+NIYA    WKDVARVRT M
Sbjct: 492 SVYGAMLGACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAM 551

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           +++ ++K PGWS I++   VH F +G   H+ AK+I+++L  ++   ++ GY+P T+  +
Sbjct: 552 EKKGLQKTPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTD-SI 610

Query: 556 HNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H+++++ K + L  HSEKLA+A+GLI+T PGTTI+I K L +C DCH+  K  S ++ RE
Sbjct: 611 HDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGRE 670

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           I++RD  RFH+FKDG CSC DYW
Sbjct: 671 IIMRDIQRFHHFKDGKCSCGDYW 693


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 223/713 (31%), Positives = 358/713 (50%), Gaps = 118/713 (16%)

Query: 30  TETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE  + +L+ +  S K   Q +Q+HAQ++     +   ++  L   + ++   D +L +F
Sbjct: 5   TEALVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHD-SLRLF 63

Query: 87  D--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +  HF P     +  +IR    +      +  F+ ML   + P+   +P V KS A L  
Sbjct: 64  NTIHFPPA--LAWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCALLMD 121

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL------GKTR-GAFKVFDETPEKNKS- 196
           L+LG  LH  I++ G+++D +    L +MY +L      G+ R GA +VFDE  E+ +S 
Sbjct: 122 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSV 181

Query: 197 --------------------ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN------- 229
                               + ++ WN +I G ++ G   + + +   M   N       
Sbjct: 182 RTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFT 241

Query: 230 ----------------------------------VASWVSLIDGFMRKGDLKKAGELFEQ 255
                                             VAS  SLID + +   +  +  +F  
Sbjct: 242 LSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVAS--SLIDMYAKCTRVADSCRVFTL 299

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           + E+  +SW ++I G  QNG  ++ L  F QML A ++   ++  S + ACA +  L  G
Sbjct: 300 LTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLG 359

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H YI+ N F     I ++LVDMYAKCGNI  A  +F   + +D+++WTAMI G A+H
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G+   AI+ F++M   G +       A+LTAC + G V  A  +F+SM  D+ I P V+H
Sbjct: 420 GQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEH 472

Query: 436 HTVVVNLLSRVGQDSQGYQ----------------------------NSQNSFTKLLQLK 467
           +  V +LL R G+  + Y                              ++    ++L++ 
Sbjct: 473 YAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVD 532

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           P +  +Y+LL+NIY+A  RWK+ A+ R  M+R  I+K P  S+IEV   V+ F AG   H
Sbjct: 533 PNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKVYAFMAGDESH 592

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTP 584
              ++I   +E ++    ++GY+P T  V H+++EE+++ L C HSE+LA+ FG+I T  
Sbjct: 593 PCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPA 652

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G TI++ K L +C DCH+  K+ SKI  REIV+RD +RFH+FK+GTCSC DYW
Sbjct: 653 GMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 705



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/262 (23%), Positives = 119/262 (45%), Gaps = 13/262 (4%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP ++ T + ++ LI  +    + ++IH   I   L A   + + LI   +    +  + 
Sbjct: 236 KP-DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSC 294

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F   T ++   +N +I G  +N  F   +  F  ML   ++P   ++  +  + A L+
Sbjct: 295 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLT 354

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG+ LH  I ++G + + F+   L DMY + G  R A ++FD    + +   ++ W 
Sbjct: 355 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFD----RMRLRDMVSWT 410

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---- 259
            +I GC+  G    A+ELF  M  + +    +++      G + +A + F  M       
Sbjct: 411 AMIMGCALHGQAPDAIELFEQMETEGIK---AVLTACSHGGLVDEAWKYFNSMTRDFGIA 467

Query: 260 -GVVSWTAMINGFSQNGEAEKA 280
            GV  + A+ +   + G  E+A
Sbjct: 468 PGVEHYAAVSDLLGRAGRLEEA 489


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 182/496 (36%), Positives = 284/496 (57%), Gaps = 36/496 (7%)

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
           MY + G+   A   FDE P ++    V L NV++        + +A ++F  MP +++ S
Sbjct: 1   MYAKAGRVDLARDAFDEAPLRD----VFLCNVMLAAYVSRSEVAEARKVFDGMPMRDLVS 56

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           W ++I G+  +G++  A E+F+   ++   SW++MI+ ++++  +++AL ++ +M  A +
Sbjct: 57  WNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASI 116

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             +  T+VS +SAC+ +GAL  G  VH ++  N   L   +GTAL+DMYAKCG+IE+A  
Sbjct: 117 IPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQR 176

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF    EKD+ TW++MI GLA HG   +++  F KM+  G +P+G  F+ +L AC + G 
Sbjct: 177 VFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVGL 236

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------------------ 454
           V     +F SM   + IEP+V+H+  +V+LL R G   +  Q                  
Sbjct: 237 VSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSMTFEPDTIIWRALL 296

Query: 455 ----------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                      ++ +  KL  L P     YVLLSNIYA    W+ VA +R  ++R +I++
Sbjct: 297 GACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSWEGVAEMRKTIRRDNIQR 356

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE- 561
            PG S IE +  +H F +G   H  +KEI+  LE++M   ++ GY P T  VL +I E+ 
Sbjct: 357 IPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQAGYKPMTGLVLQDIDEQS 416

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE +L  HSEKLA+AF L+ T   +TI+I K L  C DCHS MK  S +  R++++RD  
Sbjct: 417 KERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAMKLISLVYDRKLIVRDRN 476

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+F +G CSC+DYW
Sbjct: 477 RFHHFSEGQCSCKDYW 492



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/228 (22%), Positives = 100/228 (43%), Gaps = 13/228 (5%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +I   ++   +  A  IFD    ++   ++ +I   A++   +  +  +  M   S+ P+
Sbjct: 60  MIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAASIIPD 119

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T   V  + + L  L++G  +H  +  + +E D  +   L DMY + G    A +VFD
Sbjct: 120 CITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGTALIDMYAKCGDIESAQRVFD 179

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKG 244
             PEK+    V  W+ +I G +  G   +++ LF  M     K N  ++V ++      G
Sbjct: 180 RMPEKD----VQTWSSMIIGLANHGLGHESLSLFSKMISEGMKPNGVTFVGVLIACTHVG 235

Query: 245 DLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
            + +  + F  M      E  V  +  M++   ++G  E+A  +   M
Sbjct: 236 LVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQLIRSM 283


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 218/677 (32%), Positives = 339/677 (50%), Gaps = 76/677 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           T  + L  S +  +    +H+ I+     +++ +   LI++ S+  S+D A S+F+    
Sbjct: 150 TSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILC 209

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K++ ++  ++    EN  F+  +     M      PN  T+    K+   L      + +
Sbjct: 210 KDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSV 269

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I+K+  E D  V V L  +Y QLG    AFKVF+E P+ +    V+ W+ +I    +
Sbjct: 270 HGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKND----VVPWSFMIARFCQ 325

Query: 212 IGYLRKAVELFGMM------PKKNVASWV------------------------------- 234
            G+  KAV++F  M      P +   S +                               
Sbjct: 326 NGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYV 385

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +LID + +   +  A +LF ++  K VVSW  +I G+   GE  KAL MF + L   V
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQV 445

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
              + T  SAL ACA + ++E GV+VH      +   + A+  +L+DMYAKCG+I+ A  
Sbjct: 446 SVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQT 505

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF E +  D+ +W A+I G + HG   QA++ F  M  S  +P+G  FL +L+ C  +G 
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGL 565

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------YQNS-------- 456
           +    + F+SM  D+ IEP ++H+T +V L  R GQ  +         Y+ S        
Sbjct: 566 IDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAML 625

Query: 457 ------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                       + S  ++L++ PK  ++YVLLSN+YA   +W +VA +R  M+ + +KK
Sbjct: 626 SASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVASIRKSMKEKGVKK 685

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEE 561
           +PG S+IE  G VH F  G   H   K I+  LE +   A   GY+P    VL ++  EE
Sbjct: 686 EPGLSWIEHQGDVHFFSVGSSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEE 745

Query: 562 KEEALGCHSEKLALAFGLIQ-TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
           K++ L  HSE+LALA+GL++  +    I I+K L IC DCHS MK  S I QR++V+RD 
Sbjct: 746 KDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDM 805

Query: 620 TRFHYFKDGTCSCRDYW 636
            RFH+F  G CSC D+W
Sbjct: 806 NRFHHFHAGVCSCDDHW 822



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 31/291 (10%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN---- 203
            + +HC I+K G   D F    L + YV+ G  + A  +FDE PE+N    V L      
Sbjct: 68  AKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYAC 127

Query: 204 ----VLINGCSKIGY------LRKAVELFGMMPKKNVASWV-----------------SL 236
                L +   + G+          ++LF  + K  +  W+                 +L
Sbjct: 128 QDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAAL 187

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I+ +   G +  A  +FE +  K +V W  +++ + +NG  E +L +  +M   G   N+
Sbjct: 188 INAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNN 247

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           +T  +AL A   +GA      VH  I    + L   +G  L+ +Y + G++  A  VF E
Sbjct: 248 YTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNE 307

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             + D++ W+ MI     +G   +A+  F +M      P+     +IL  C
Sbjct: 308 MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGC 358


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 210/637 (32%), Positives = 334/637 (52%), Gaps = 68/637 (10%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAEN 107
           IH  ++ +   ++  +   L+   +  + I  A  +F    F   N  ++  ++ G A+N
Sbjct: 234 IHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQN 293

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F +M    V  N+ T+P +  + +S+S    G  +H  IV++G   +A+V+
Sbjct: 294 GDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQ 353

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY + G    A +V     E  + + V+ WN +I GC + G+  +A+ LF     
Sbjct: 354 SALVDMYAKCGDLGSAKRVL----ENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHA 409

Query: 223 -------------------GMMPKKNVASWV-------------SLIDGFMRKGDLKKAG 250
                              G +  K+V   V             +L+D + +  DL  A 
Sbjct: 410 RNMKIDHYTFPSVLNCCIVGRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAY 469

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            +FE+M EK V+SWT+++ G++QNG  E++L  F  M  +GV  + F V S LSACA++ 
Sbjct: 470 AVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELT 529

Query: 311 ALEAGVRVHNYISCNDF---GLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            LE G +VH+     DF   GL+ +  +  +LV MYAKCG ++ A  +F     +D++TW
Sbjct: 530 LLEFGKQVHS-----DFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITW 584

Query: 366 TAMIWGLAIHGRYEQAIQYFKKM--MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           TA+I G A +G+   +++YF++M  +Y G EP    +  ++      G++  A    + M
Sbjct: 585 TALIVGYARNGKGRDSLKYFQQMKKIY-GIEPGPEHYACMIDLFGRLGKLDEAKEILNQM 643

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
                    VK    V   L    +     +  + + T L +L+P +   YV+LSN+Y A
Sbjct: 644 --------DVKPDATVWKALLAACRVHGNLELGERAATNLFELEPMNAMPYVMLSNMYLA 695

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAG 541
             +W D A++R LM+ + I K+PG S+IE+N  +H F  E  GH    EI+SK+++I+  
Sbjct: 696 ARKWDDAAKIRRLMKSKGITKEPGCSWIEMNSRLHTFISEDRGHPREAEIYSKIDEIIRR 755

Query: 542 AREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +E GY+P   + LH++ +E KE  L  HSEKLA+AFGL+ + PG  I+I K L +CGDC
Sbjct: 756 IKEVGYVPDMNFSLHDMDREGKEAGLAYHSEKLAVAFGLLASPPGAPIRIFKNLRVCGDC 815

Query: 601 HSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           HS MKY S +  R I+LRD+  FH+FK+G CSC DYW
Sbjct: 816 HSAMKYISGVFTRHIILRDSNCFHHFKEGECSCEDYW 852



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 187/428 (43%), Gaps = 77/428 (17%)

Query: 53  QIILHNL---FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE--- 106
           Q+++HN+   + S   + QL++  S    ID A  +FD    ++ + +N ++ G A    
Sbjct: 102 QVVMHNIADSYQSIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGR 161

Query: 107 -------------------------NSHFQSCISHFVFMLRLSV---RPNRLTYPFVSKS 138
                                       F      F    R+ +   +P++ T   + + 
Sbjct: 162 LVEARELFNGFSSRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRG 221

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            ++L L+  G  +H  +VK+G E + +V   L DMY +      A  +F +    NK   
Sbjct: 222 CSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILF-KGLAFNKGNH 280

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-------------------------- 232
           V LW  ++ G ++ G   KA+E F  M  + V S                          
Sbjct: 281 V-LWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHG 339

Query: 233 -------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                          +L+D + + GDL  A  + E M +  VVSW +MI G  ++G  E+
Sbjct: 340 CIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEE 399

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A+ +F +M    ++ + +T  S L+ C  VG ++ G  VH  +    F     +  ALVD
Sbjct: 400 AILLFKKMHARNMKIDHYTFPSVLNCCI-VGRID-GKSVHCLVIKTGFENYKLVSNALVD 457

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAK  ++  A  VF +  EKD+++WT+++ G   +G +E++++ F  M  SG  PD  +
Sbjct: 458 MYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFI 517

Query: 400 FLAILTAC 407
             +IL+AC
Sbjct: 518 VASILSAC 525



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 78/396 (19%), Positives = 161/396 (40%), Gaps = 84/396 (21%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           SN  T   I++   S ++     Q+H  I+ +    ++ + + L+   +    +  A  +
Sbjct: 313 SNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRV 372

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
            ++    ++  +N +I G   +   +  I  F  M   +++ +  T+P    SV +  ++
Sbjct: 373 LENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNMKIDHYTFP----SVLNCCIV 428

Query: 146 SL--GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               G+ +HCL++K+G E    V   L DMY +      A+ VF++  EK+    V+ W 
Sbjct: 429 GRIDGKSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKD----VISWT 484

Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWV----------------------- 234
            L+ G ++ G   ++++ F      G+ P + + + +                       
Sbjct: 485 SLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKL 544

Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                     SL+  + + G L  A  +F  M  + V++WTA+I G+++NG+   +L  F
Sbjct: 545 GLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYF 604

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            QM                    K+  +E G     + +C            ++D++ + 
Sbjct: 605 QQM-------------------KKIYGIEPGPE---HYAC------------MIDLFGRL 630

Query: 345 GNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYE 379
           G ++ A  +  +   K D   W A++    +HG  E
Sbjct: 631 GKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLE 666



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 104/249 (41%), Gaps = 13/249 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H  +I         ++  L+   +  + ++ A ++F+    K++  +  L+ G  +N
Sbjct: 434 KSVHCLVIKTGFENYKLVSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQN 493

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M    V P++     +  + A L+LL  G+ +H   +K G+     V 
Sbjct: 494 GSHEESLKTFCDMRISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGLRSSLSVN 553

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G    A  +F     ++    V+ W  LI G ++ G  R +++ F  M K
Sbjct: 554 NSLVTMYAKCGCLDDADAIFVSMHVRD----VITWTALIVGYARNGKGRDSLKYFQQMKK 609

Query: 228 -----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGE---AE 278
                     +  +ID F R G L +A E+  QM  K     W A++     +G     E
Sbjct: 610 IYGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGE 669

Query: 279 KALAMFFQM 287
           +A    F++
Sbjct: 670 RAATNLFEL 678


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 313/589 (53%), Gaps = 85/589 (14%)

Query: 130 LTYPFVSKSVASL-----SLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRG- 182
           L  P V K +  L     S ++  R +H   ++ GV   DA +  HL    V L      
Sbjct: 10  LLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPM 69

Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PKKNVASW 233
             A KVF +     K  +V +WN LI G ++IG    A  L+  M       P  +   +
Sbjct: 70  SYAHKVFSKI---EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPF 126

Query: 234 V---------------------------------SLIDGFMRKGDLKKAGELFEQMPEKG 260
           +                                 SL+  +   GD+  A ++F++MPEK 
Sbjct: 127 LIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V+W ++INGF++NG+ E+ALA++ +M   G++ + FT+VS LSACAK+GAL  G RVH 
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y+              L+D+YA+CG +E A  +F E  +K+ ++WT++I GLA++G  ++
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKE 306

Query: 381 AIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
           AI+ FK M  + G  P    F+ IL AC + G VK    +F  MR +Y IEP ++H   +
Sbjct: 307 AIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCM 366

Query: 440 VNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHP 471
           V+LL+R GQ  + Y+                             ++ +  ++LQL+P H 
Sbjct: 367 VDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHS 426

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             YVLLSN+YA+E RW DV ++R  M R  +KK PG S +EV   VH F  G   H  + 
Sbjct: 427 GDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSD 486

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
            I++KL+++    R +GY+P    V  ++ +EEKE A+  HSEK+A+AF LI T   + I
Sbjct: 487 AIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPI 546

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +VK L +C DCH  +K  SK+  REIV+RD +RFH+FK+G+CSC+DYW
Sbjct: 547 TVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 198/421 (47%), Gaps = 58/421 (13%)

Query: 42  NSTKQLRQIHAQIILHNL-FASSRITTQLI---SSASLHKSIDYALSIFDHFT-PKNLHI 96
           +S  +LRQIHA  I H +  + + +   LI    S      + YA  +F     P N+ I
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           +N LIRG AE  +  S  S +  M R+S  V P+  TYPF+ K+V +++ + LG  +H +
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREM-RVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------ 208
           +++SG     +V+  L  +Y   G    A+KVFD+ PEK+    ++ WN +ING      
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----LVAWNSVINGFAENGK 202

Query: 209 -----------------------------CSKIGYL----RKAVELFGMMPKKNVASWVS 235
                                        C+KIG L    R  V +  +   +N+ S   
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRA 294
           L+D + R G +++A  LF++M +K  VSWT++I G + NG  ++A+ +F  M    G+  
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-S 351
            + T V  L AC+  G ++ G      +   ++ ++  I     +VD+ A+ G ++ A  
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMR-EEYKIEPRIEHFGCMVDLLARAGQVKKAYE 381

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            +     + +++ W  ++    +HG  +  +  F ++     EP+ +    +L+  + S 
Sbjct: 382 YIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPNHSGDYVLLSNMYASE 439

Query: 412 Q 412
           Q
Sbjct: 440 Q 440


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 200/553 (36%), Positives = 302/553 (54%), Gaps = 59/553 (10%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           + +RP+ ++   V  + AS+     G+ +H + V+SG   D FV   L DMY + G    
Sbjct: 7   IDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDE 66

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN----VASWVSLID 238
           A KVFD   EK+    V+ WN ++NG S+IG    A+ LF  M ++N    V SW ++I 
Sbjct: 67  ASKVFDRIKEKD----VVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIA 122

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRAND 296
            F ++G   +  ++F +M                Q+GEA  AL +F  M   D  V+ N 
Sbjct: 123 AFAQRGLGCETLDVFREM----------------QHGEANDALELFSWMFKQDGLVKPNC 166

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFG 355
           FT+  AL ACA++ AL  G ++H YI  N F      +   L+DMYAK G+I+ A  VF 
Sbjct: 167 FTISCALIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFD 226

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
             K+K+ ++WT+++ G  +HGR ++A++ F +M   G +PDG   L +L AC +SG +  
Sbjct: 227 NLKQKNFVSWTSLMTGYGMHGRGKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQ 286

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ------GYQNSQNSFT-------- 461
            + FF+SM  ++ + P  +H+  +V+LL R G+ ++      G Q   +S          
Sbjct: 287 GIEFFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGC 346

Query: 462 --------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                         +LL+L  ++  SY LLSNIYA   RWKDVARVR+LM+   I+K PG
Sbjct: 347 RIHANVELGEHAAKQLLELNSENDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPG 406

Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEE 564
            S+++       F      H  +K+I+  L  +    +  GY+P T + LH++  EEK +
Sbjct: 407 CSWVQGKKGTTTFYVADKTHPQSKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVD 466

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
            L  HSEKLALA+G++ + PG  I+I K L +CGDCH+ + Y S I   EI+LRD +RFH
Sbjct: 467 LLFEHSEKLALAYGILISAPGAPIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFH 526

Query: 624 YFKDGTCSCRDYW 636
           +FK G+CSC  YW
Sbjct: 527 HFKKGSCSCSGYW 539



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 84/365 (23%), Positives = 167/365 (45%), Gaps = 33/365 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H   +    F    +   L+   +    +D A  +FD    K++  +N ++ G ++ 
Sbjct: 33  KAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVSWNAMVNGYSQI 92

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             F+  +  F  M   ++  N +++  V  + A        RGL C  +      D F  
Sbjct: 93  GRFEDALGLFEKMREENIELNVVSWSAVIAAFAQ-------RGLGCETL------DVFRE 139

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN---KSESVLLWNVLINGCSKIGYLRKAVELFGM 224
                  +Q G+   A ++F    +++   K     +   LI  C+++  LR   ++   
Sbjct: 140 -------MQHGEANDALELFSWMFKQDGLVKPNCFTISCALI-ACARLAALRLGRQIHAY 191

Query: 225 MPKKNVAS---WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
           + + +  S   +V+  LID + + GD+  A  +F+ + +K  VSWT+++ G+  +G  ++
Sbjct: 192 ILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKE 251

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTA-L 337
           AL +F +M   G++ +  T++  L AC+  G ++ G+   N +S  +FG + G    A +
Sbjct: 252 ALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMS-KEFGVIPGQEHYACM 310

Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           VD+  + G + EA  L+ G   E   + W A++ G  IH   E      K+++   +E D
Sbjct: 311 VDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSEND 370

Query: 397 GTVFL 401
           G+  L
Sbjct: 371 GSYTL 375



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/136 (36%), Positives = 73/136 (53%)

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
           D  +R +  ++V+ L ACA +GA   G  VH     +       +G ALVDMYAKCG ++
Sbjct: 6   DIDMRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVD 65

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            AS VF   KEKD+++W AM+ G +  GR+E A+  F+KM     E +   + A++ A  
Sbjct: 66  EASKVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFA 125

Query: 409 YSGQVKLALNFFDSMR 424
             G     L+ F  M+
Sbjct: 126 QRGLGCETLDVFREMQ 141


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 170/434 (39%), Positives = 262/434 (60%), Gaps = 32/434 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + + G +  A +LF++MP+K +V+ T MI G+++ G+  ++  +F QM   G   
Sbjct: 141 TLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVP 200

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +   +V+ ++ACAK+GA+     VH+Y+    + L   +GTA++DMYAKCG+I+++  +F
Sbjct: 201 DKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIF 260

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
              ++K++++W+AMI     HG+  +A++ F  M+ SG  P+   F+++L AC ++G V 
Sbjct: 261 DRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVD 320

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------ 462
             L  F  M   Y + P VKH+T +V+LL R G+  Q  +  +N   +            
Sbjct: 321 DGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGA 380

Query: 463 ----------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                           LL L+ ++P  Y+LLSNIYA  GRWKDVA++R LM +R +KK P
Sbjct: 381 CRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIP 440

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G+++IEV+  ++RF AG   H  + EI+  L+ +       GY+P T  VLH++ EE K 
Sbjct: 441 GYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKL 500

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSEKLA+AFGLI T  GT I+I K L +CGDCHS  K  S I+QR+I++RD  RF
Sbjct: 501 GILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRF 560

Query: 623 HYFKDGTCSCRDYW 636
           H+FK+G CSC DYW
Sbjct: 561 HHFKEGICSCGDYW 574



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 104/409 (25%), Positives = 204/409 (49%), Gaps = 47/409 (11%)

Query: 35  ISLIHSSNSTKQLRQIHAQI----ILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           IS +    +  Q++Q+HAQ+    I+H+L     +  +L+   + HK +  A  +F+   
Sbjct: 7   ISTLFKCRNIFQIKQVHAQVTTTGIIHDLI----VANKLLYMCAKHKDLVTAHLLFNKME 62

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            ++   ++V+I G  +N  ++ C   F  ++R   +P+  + PFV K+      L +GR 
Sbjct: 63  ERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRL 122

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------------- 194
           +H  ++K+G+  D FV   L DMY + G    A ++FD  P+K+                
Sbjct: 123 IHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGK 182

Query: 195 KSESVLLWN---------------VLINGCSKIGYLRKAVELFGMMPKK----NVASWVS 235
            +ES +L++                ++N C+K+G + KA  +   +  +    +V    +
Sbjct: 183 PNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTA 242

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           +ID + + G +  + E+F++M +K V+SW+AMI  +  +G+  +AL +F  ML++G+  N
Sbjct: 243 MIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPN 302

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SL 352
             T +S L AC+  G ++ G+++ + +S + +G++  +   T +VD+  + G ++ A  L
Sbjct: 303 RITFISLLYACSHAGLVDDGLQLFSLMSVS-YGVRPDVKHYTCMVDLLGRAGRLDQALRL 361

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           +     EKD   W A +    IH + + A +  K ++   T+  G   L
Sbjct: 362 IENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQNPGHYIL 410



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 128/261 (49%), Gaps = 14/261 (5%)

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           DL  A  LF +M E+  VSW+ MI GF +NG+ E+    F +++ AG + ++F++   + 
Sbjct: 50  DLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIK 109

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC     L  G  +H+ +  N   L   + + LVDMYAKCG I+ A  +F    +KDL+T
Sbjct: 110 ACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVT 169

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFD 421
            T MI G A  G+  ++   F +M   G  PD    + I+ AC   G   + +L  ++  
Sbjct: 170 RTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVC 229

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481
           + R+   +E      T ++++ ++ G       +S+  F ++ Q   K+  S+  +   Y
Sbjct: 230 ARRYSLDVELG----TAMIDMYAKCGS----IDSSREIFDRMEQ---KNVISWSAMIGAY 278

Query: 482 AAEGRWKDVARVRTLMQRRSI 502
              G+ ++   +  +M    I
Sbjct: 279 GYHGQGREALELFHMMLNSGI 299



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 116/278 (41%), Gaps = 14/278 (5%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I++  KP +N +   +I     +      R IH+ ++ + L   + + + L+   +    
Sbjct: 93  IRAGSKP-DNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGM 151

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ID A  +FD    K+L    V+I G AE          F  M R    P+++    +  +
Sbjct: 152 IDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPDKVAMVTIVNA 211

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L  ++  R +H  +       D  +   + DMY + G    + ++FD   +KN    
Sbjct: 212 CAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKN---- 267

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ W+ +I      G  R+A+ELF MM       N  +++SL+      G +    +LF 
Sbjct: 268 VISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFS 327

Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
            M         V  +T M++   + G  ++AL +   M
Sbjct: 328 LMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENM 365



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 45/75 (60%)

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +   L+ M AK  ++  A L+F + +E+D ++W+ MI G   +G YE+  Q F++++ +G
Sbjct: 37  VANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAG 96

Query: 393 TEPDGTVFLAILTAC 407
           ++PD      ++ AC
Sbjct: 97  SKPDNFSLPFVIKAC 111



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 47/235 (20%), Positives = 99/235 (42%), Gaps = 13/235 (5%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSR------ITTQLISSASLHKSIDYALSIFDH 88
           ++++   N+  +L  ++   ++H+   + R      + T +I   +   SID +  IFD 
Sbjct: 203 VAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDR 262

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              KN+  ++ +I     +   +  +  F  ML   + PNR+T+  +  + +   L+  G
Sbjct: 263 MEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDG 322

Query: 149 RGLHCLI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
             L  L+ V  GV  D      + D+  + G+   A ++  E  E  K E +  W   + 
Sbjct: 323 LQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLI-ENMEVEKDEGI--WCAFLG 379

Query: 208 GC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            C    ++    KA +L   +  +N   ++ L + +   G  K   ++   M ++
Sbjct: 380 ACRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKR 434


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 290/543 (53%), Gaps = 74/543 (13%)

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
            V Y+  +  H A      G   GA ++F   P ++    V+ WN +++G SK G + +A
Sbjct: 129 AVSYNTLLSCHFAS-----GDADGARRLFASMPVRD----VVSWNTMVSGLSKSGAVEEA 179

Query: 219 VELFGMMPKKNVASWVSLIDGF--------------------------------MRKGDL 246
             +F  MP +N  SW +++ GF                                M  G++
Sbjct: 180 KAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNV 239

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSA 305
            KA E FE MP + +VSW A++ G+ +N  A+ AL +F  M+ +A V+ N  T+ S L  
Sbjct: 240 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 299

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+ + AL  G ++H +           +GT+LV MY KCG++ +A  +FGE   +D++ W
Sbjct: 300 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 359

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI G A HG  ++AI  F++M   G EP+   F+A+LTAC ++G     +  F+ M+ 
Sbjct: 360 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 419

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQ 457
            Y IEP V H++ +V+LL R G+  +                          Y+N   ++
Sbjct: 420 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 479

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  KL++  P+   +YV L+NIYA   +W DV+RVR  M+  ++ K PG+S+IE+ G +
Sbjct: 480 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVM 539

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F +    H     IH KL  +    +  GY+P  ++VLH++ E  K + L  HSEKLA
Sbjct: 540 HEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLA 599

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           ++FGLI T PG T++I K L +CGDCH+  K  SKI  REI+LRD TRFH+F+ G CSC 
Sbjct: 600 ISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCG 659

Query: 634 DYW 636
           DYW
Sbjct: 660 DYW 662



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASW 233
           V+ G   GA + F  TP K  +     +N L+ G ++ +G L  A  LF  +P  +  S+
Sbjct: 77  VRRGDLTGAEEAFASTPRKTTAT----YNCLLAGYARALGRLADARHLFDRIPTPDAVSY 132

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGV 292
            +L+      GD   A  LF  MP + VVSW  M++G S++G  E+A A+F  M +   V
Sbjct: 133 NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 192

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             N   +VS  +    + A E   R  N     D      + TA+V  Y   GN+  A  
Sbjct: 193 SWN--AMVSGFACSRDMSAAEEWFR--NAPEKGD----AVLWTAMVSGYMDIGNVVKAIE 244

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTAC 407
            F     ++L++W A++ G   +   + A++ F+ M+  +  +P+ +   ++L  C
Sbjct: 245 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 300



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 18/221 (8%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFV 135
           K+I+Y    F+    +NL  +N ++ G  +NSH    +  F  M+R  +V+PN  T   V
Sbjct: 241 KAIEY----FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSV 296

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
               ++LS L  G+ +H   +K  +  +  V   L  MY + G    A K+F E   ++ 
Sbjct: 297 LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRD- 355

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
              V+ WN +I+G ++ G  ++A+ LF  M  + V     ++V+++   +  G       
Sbjct: 356 ---VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIR 412

Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
            FE M      E  V  ++ M++   + G+ E+A+ +   M
Sbjct: 413 CFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 453


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 204/661 (30%), Positives = 330/661 (49%), Gaps = 76/661 (11%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            ++IH   +   + +   + T L+   +     + A  +F     ++L  ++ +I  L + 
Sbjct: 349  KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 108  SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             + +  +S F  M    ++PNR+T   +  + A LSLL LG+ +HC  VK+ ++ D    
Sbjct: 409  GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 168  VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
              L  MY + G    A   F+    +  S  ++ WN LING ++IG    A+++F     
Sbjct: 469  TALVSMYAKCGFFTAALTTFN----RMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 223  -----------GMMPKKNVASWV-----------------------SLIDGFMRKGDLKK 248
                       G++P   + + +                       +LID + + G L  
Sbjct: 525  SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 249  AGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  LF +    K  V+W  +I  + QNG A++A++ F QM       N  T VS L A A
Sbjct: 585  AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 308  KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
             + A   G+  H  I    F     +G +L+DMYAKCG ++ +  +F E   KD ++W A
Sbjct: 645  YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNA 704

Query: 368  MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
            M+ G A+HG  ++AI  F  M  S  + D   F+++L+AC ++G V+     F SM   Y
Sbjct: 705  MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKY 764

Query: 428  FIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNSQNS 459
             I+P ++H+  +V+LL R G   ++ G+                          +  + +
Sbjct: 765  HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824

Query: 460  FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
               L++L+P++P+ +V+LS+IYA  GRW D  + R+ M    +KK PG S++E+   VH 
Sbjct: 825  LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHA 884

Query: 520  FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALA 576
            F  G   H   + +H     ++    + GY+P    VL N++EE KE  L  HSE+LA+ 
Sbjct: 885  FRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAIT 944

Query: 577  FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
            F L+ T PG+TI+IVK L +C DCH+  K+ SKI+ R I++RD TRFH+F+DG CSC DY
Sbjct: 945  FALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDY 1004

Query: 636  W 636
            W
Sbjct: 1005 W 1005



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 200/441 (45%), Gaps = 42/441 (9%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
           H   R  T+IA   +   S   S      H   L+ S      L QIHAQII+   F   
Sbjct: 5   HQLRRSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHH 63

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
              T LI+  SL    D A S+FD     +  ++N +IR    +  +   +  +  M+  
Sbjct: 64  HSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK 123

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            + P++ T+ FV K+      L  G   H  I + G+E D F+   L DMY ++G  + A
Sbjct: 124 GLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRA 183

Query: 184 FKVFDETPEKNKSESVLLWNVLING-------CSKIGYLR---------KAVELFGMMP- 226
            +VFD+ P+++    V+ WN +I G       C  + + R          +V L  + P 
Sbjct: 184 REVFDKMPKRD----VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 227 ------------------KKNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                             +++ +S VS  LID + + GD+  A  +F+QM ++  VSW  
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+ G++ NG   + L +F +M    VR N  + VSA  A A+   LE G  +H       
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                 + T L+ MYAKCG  E A  +F   + +DL+ W+A+I  L   G  E+A+  F+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419

Query: 387 KMMYSGTEPDGTVFLAILTAC 407
           +M     +P+    ++IL AC
Sbjct: 420 EMQNQKMKPNRVTLMSILPAC 440


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 297/573 (51%), Gaps = 80/573 (13%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +++S + +S    +H  ++KS    D F+   L  MY +LG    A ++FDE P ++   
Sbjct: 148 AISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRD--- 204

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF----------------------------------- 222
            ++ WN L++G S  GYL   +  F                                   
Sbjct: 205 -LVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSL 263

Query: 223 -------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                  GM  K  V +  SLI+ + + G L  A +LFE+MP + +VSW +M+   + NG
Sbjct: 264 HGVVVKLGMSGKAKVVN--SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNG 321

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
            AEK + +F  M  AG+  +  T+V+ L AC   G       +H YI    F     I T
Sbjct: 322 YAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIAT 381

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           AL+++YAK G + A+  +F E K++D + WTAM+ G A+H    +AI+ F  M+  G E 
Sbjct: 382 ALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEV 441

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
           D   F  +L+AC +SG V+    +F+ M   Y +EP + H++ +V+LL R G+    Y+ 
Sbjct: 442 DHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYEL 501

Query: 456 ----------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                        +    +LL L P    +Y++LSNIY+A G W
Sbjct: 502 IKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLW 561

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ 545
           +  ++VR LM+ R + ++PG S+IE    +HRF  G   H  + EIH+KLE+++    E 
Sbjct: 562 RXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEA 621

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           G  P TE+VLH+I EE K + +  HSEKLA+AFGL+ T  G  + I K L ICGDCHS  
Sbjct: 622 GCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTA 681

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+AS + +R I++RD+ RFH+F DG CSCRDYW
Sbjct: 682 KFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 68/351 (19%), Positives = 147/351 (41%), Gaps = 19/351 (5%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S +  N +T   ++S      +  + + +H  ++   +   +++   LI+       +D 
Sbjct: 235 SGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDA 294

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    ++L  +N ++     N + +  +  F  M R  + P++ T   + ++   
Sbjct: 295 ASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTD 354

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
             L      +H  I + G   D  +   L ++Y +LG+   +  +F+E  +++     + 
Sbjct: 355 TGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRD----TIA 410

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP 257
           W  ++ G +     R+A++LF +M K+ V     ++  L+      G +++  + FE M 
Sbjct: 411 WTAMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMS 470

Query: 258 EKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           E   V      ++ M++   ++G  E A  +   M    +  +     + L AC   G +
Sbjct: 471 EVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSM---PMEPSSGVWGALLGACRVYGNV 527

Query: 313 EAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           E G  V    +S +    +  I   L ++Y+  G    AS V    KE+ L
Sbjct: 528 ELGKEVAEQLLSLDPSDHRNYI--MLSNIYSAAGLWRXASKVRXLMKERRL 576



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 9/147 (6%)

Query: 272 SQNGEAEKALAMFFQML-DAGVRANDF--TVVSALSACAKVGALEA-GVRVHNYISCNDF 327
           S N      +A+F   L ++ + A+    ++V A+S+C  V    A   RV   ++ +D 
Sbjct: 115 SSNDSTRTKVAVFLGKLHNSSLLADSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSD- 173

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
              G IG  LV MY K G  E A  +F E   +DL++W +++ GL+  G     +  F +
Sbjct: 174 ---GFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGYLGACLNAFCR 230

Query: 388 M-MYSGTEPDGTVFLAILTACWYSGQV 413
           M   SG +P+    L++++AC   G +
Sbjct: 231 MRTESGRQPNEVTLLSVVSACAXMGAL 257


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  338 bits (867), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 204/643 (31%), Positives = 333/643 (51%), Gaps = 73/643 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDHF 89
           + +IS +    +  Q++QIH  ++   L  S  I T+LI + + L   +D YA  + +  
Sbjct: 50  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPV 109

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             +N  ++  +IRG A    F   I+ +  M +  + P   T+  + K+  ++  L+LGR
Sbjct: 110 QFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLNLGR 169

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
             H    +       +V   + DMYV+      A KVFDE                    
Sbjct: 170 QFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDE-------------------- 209

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                          MP+++V SW  LI  + R G+++ A ELFE +P K +V+WTAM+ 
Sbjct: 210 ---------------MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVT 254

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           GF+QN + ++AL  F +M  +G+RA++ TV   +SACA++GA +   R       + +  
Sbjct: 255 GFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSP 314

Query: 330 KG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                IG+AL+DMY+KCGN+E A  VF     K++ T+++MI GLA HGR ++A+  F  
Sbjct: 315 SDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHY 374

Query: 388 MM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           M+  +  +P+   F+  L AC +SG V      FDSM   + ++P+  H+T +V+LL R 
Sbjct: 375 MVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRT 434

Query: 447 GQDSQGYQ----------------------------NSQNSFTKLLQLKPKHPSSYVLLS 478
           G+  +  +                             ++ +   L +L+P    +Y+LLS
Sbjct: 435 GRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLS 494

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI-EVNGHVHRFEAGG--HKLAKEIHSKL 535
           N+YA+ G W  V RVR L++ + +KK P  S++ + NG +H+F  G   H ++ +I  KL
Sbjct: 495 NVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKL 554

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E+++      GY P    V +++ +  K   L  H+EKLALAF L+ T   +TI I+K L
Sbjct: 555 EELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNL 614

Query: 595 TICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +C DCH  M+ AS+++ + I++RD  RFH+F+ G CSC D+W
Sbjct: 615 RMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  338 bits (867), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 222/725 (30%), Positives = 361/725 (49%), Gaps = 117/725 (16%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H+ S     + I   + S+ +T QL ++H+ II   L  S   + +LI+  +  +    +
Sbjct: 8   HECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSS 67

Query: 83  LSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
            S+F   +P  N++++N +IR L  N  F   +S +    R+ ++P+  T+P V  + A 
Sbjct: 68  FSVFRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAG 127

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L    + + +H  ++  G   D ++   L DMY +      A KVF+E P ++    V+ 
Sbjct: 128 LLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRD----VVS 183

Query: 202 WNVLINGCSKIGYLRKAVELF----------------------------GMMPKKNVASW 233
           WN LI+G +  GY  +A+E++                            G +       +
Sbjct: 184 WNSLISGYNANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKY 243

Query: 234 VS-----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           V                  LI+ + + G+L  + E+F  M  K  VSW +MIN + QNG+
Sbjct: 244 VHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGK 303

Query: 277 AEKALAMF-------------------------------FQMLDAGVRANDFTVVSALSA 305
              +L +F                                +M   GV  +  T++S L  
Sbjct: 304 MGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPV 363

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           C+ + A   G  +H  I     GL+    +G  L++MY+KCG++  +  VF   K KD++
Sbjct: 364 CSLLAAKRQGKEIHGCIF--KLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVV 421

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           TWTA+I    ++G  ++A++ F +M  +G  PD   F+AI+ AC +SG V+  LN+F  M
Sbjct: 422 TWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRM 481

Query: 424 RFDYFIEPSVKHHTVVVNLLSR---------------VGQDSQGY-------------QN 455
           + DY IEP ++H+  VV+LLSR               +  DS  +             + 
Sbjct: 482 KKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEI 541

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
           ++    ++++L P     YVL+SNIYAA G+W  V  +R  ++ R +KKDPG S++E+  
Sbjct: 542 AERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQN 601

Query: 516 HVHRFEAGGHKLAK-EIHSKLEDIMAG-AREQGYMPGTEWVLHNIKE-EKEEALGCHSEK 572
            V+ F  G     + E  +KL  ++AG   ++GY+   ++VLH+I E EK + L  HSE+
Sbjct: 602 KVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSER 661

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AFGL+ T PGT ++++K L +C DCH++ KY SKI QRE+++RD  RFH FKDG CS
Sbjct: 662 LAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACS 721

Query: 632 CRDYW 636
           C DYW
Sbjct: 722 CGDYW 726


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 215/679 (31%), Positives = 346/679 (50%), Gaps = 84/679 (12%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKN 93
           I +  SS   KQ + +HA I+   L     I  T LI+  +  + ++ A   FD    K 
Sbjct: 65  IGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKT 124

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRG 150
           L  +N LI G + N   +  +  +  M+  S   ++P+ +T+     + + +  +S GR 
Sbjct: 125 LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGRE 184

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +    V SG   D+ V+  L +MY + G    A KVFD    + K+  V+ WN +I+G +
Sbjct: 185 IEARTVASGYASDSIVQNALINMYSKCGSLESARKVFD----RLKNRDVIAWNTMISGYA 240

Query: 211 KIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKK------------------ 248
           K G   +A+ELF  M    PK NV +++ L+       DL++                  
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 249 ------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                             A ++FE++  + V++W  +I  + Q G+A+ AL +F QM   
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            V  N+ T+ + LSACA +GA   G  VH  I+         +  +L++MY +CG+++  
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDT 420

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF   ++K L++W+ +I   A HG     +++F +++  G   D    ++ L+AC + 
Sbjct: 421 VGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSHG 480

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGY-- 453
           G +K  +  F SM  D+ + P  +H   +V+LLSR G+               D+  +  
Sbjct: 481 GMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWTS 540

Query: 454 -----------QNSQNSFTKLLQLKPKHPSSYV-LLSNIYAAEGRWKDVARVRTLMQRRS 501
                      + +     KL +L+ +   S V LLSN+YA  GRW DV + R    RR+
Sbjct: 541 LLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTRN---RRA 597

Query: 502 IKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
            +K+PG SYIE+N  VH F AG   H   + I ++++ +    ++ GY+P    VLHN+K
Sbjct: 598 ARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNVK 657

Query: 560 EEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           EE++E + C HSEKLA+A+GLI T PGT + IVK L  C DCH+  K+ S+I  R+IV+R
Sbjct: 658 EEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVVR 717

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D TRFH+F++G+CSC+DYW
Sbjct: 718 DSTRFHHFENGSCSCKDYW 736



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 174/374 (46%), Gaps = 48/374 (12%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+  AL++F      N   + +++   A N H++  + ++  M+   +RP+   +     
Sbjct: 7   SVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAIG 66

Query: 138 SVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
             +S   L  G+ LH +I+++  +E+D  +   L  MY +      A K FDE  +K   
Sbjct: 67  VCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKK--- 123

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF---------GMMPK-------------------- 227
            +++ WN LI G S+ G  R A++++         GM P                     
Sbjct: 124 -TLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQG 182

Query: 228 -----KNVASWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                + VAS          +LI+ + + G L+ A ++F+++  + V++W  MI+G+++ 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G A +AL +F +M     + N  T +  L+AC  +  LE G  +H  +  + +     IG
Sbjct: 243 GAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIG 302

Query: 335 TALVDMYAKC-GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
             L++MY KC  ++E A  VF   + +D++TW  +I     +G+ + A+  FK+M     
Sbjct: 303 NVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENV 362

Query: 394 EPDGTVFLAILTAC 407
            P+      +L+AC
Sbjct: 363 APNEITLSNVLSAC 376



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 4/174 (2%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +  A  +F  +     VSWT ++  F++NG   +AL  + +M+  G+R +    V A+
Sbjct: 6   GSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMFVVAI 65

Query: 304 SACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
             C+    L+ G  +H  I           +GTAL+ MYA+C ++E A   F E  +K L
Sbjct: 66  GVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTL 125

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMY---SGTEPDGTVFLAILTACWYSGQV 413
           +TW A+I G + +G +  A++ ++ M+     G +PD   F + L AC   G +
Sbjct: 126 VTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG++  A  VF   +  + ++WT ++   A +G Y +A+ Y+++M+  G  PDG +
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 400 FLAILTACWYSGQVK 414
           F+  +  C  S  +K
Sbjct: 61  FVVAIGVCSSSKDLK 75



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 56/254 (22%), Positives = 108/254 (42%), Gaps = 39/254 (15%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT ++++S      + +Q + +HA I      A   +   L++  +   S+D  + +F
Sbjct: 365 NEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDDTVGVF 424

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                K+L  ++ LI   A++ H ++ + HF  +L+  +  + +T       V++LS  S
Sbjct: 425 AAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTM------VSTLSACS 478

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
                H  ++K GV+  +F+ +                 V D     +    + + ++L 
Sbjct: 479 -----HGGMLKEGVQ--SFLSM-----------------VGDHGLAPDYRHFLCMVDLL- 513

Query: 207 NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAG----ELFEQMPEKGV 261
              S+ G L  A  L   MP   +  +W SL+ G     D K+A     +LFE   E   
Sbjct: 514 ---SRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 262 VSWTAMINGFSQNG 275
            + T + N +++ G
Sbjct: 571 STVTLLSNVYAEAG 584


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 203/561 (36%), Positives = 304/561 (54%), Gaps = 74/561 (13%)

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S G+GLHC I+K G   D F    L +MYV+      A K+FDE PE+N    V     L
Sbjct: 55  SRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFV----TL 110

Query: 206 INGCSKIGYLRKAVELF---------------------GMMPKKNVASWV---------- 234
           I G ++     +A+ELF                       M   N+ + +          
Sbjct: 111 IQGYAESVRFLEAIELFVRLHREVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLH 170

Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                  +L+D + + G ++ + ELF + P +  V+W  +I G  Q G+ EKAL +F  M
Sbjct: 171 SDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNM 230

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           L+  V+A + T  SAL ACA + ALE G+++H+      F     +  AL+DMYAKCG+I
Sbjct: 231 LEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSI 290

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + A LVF    ++D ++W AMI G ++HG   +A++ F KM  +  +PD   F+ +L+AC
Sbjct: 291 KDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSAC 350

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNS--- 456
             +G +     +F SM  D+ IEP ++H+T +V LL R G         D   +Q S   
Sbjct: 351 ANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMV 410

Query: 457 -----------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                            + S  ++L+++P+  +++VLLSN+YA   RW +VA VR  M+R
Sbjct: 411 WRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKR 470

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + +KK+PG S+IE  G VH F  G   H   + I+  LE +    ++ GY+P    VL +
Sbjct: 471 KGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLD 530

Query: 558 IK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++ EEKE  L  HSE+LAL+FG+I+T  G+ I+I+K L IC DCH+ +K  SK+ QREIV
Sbjct: 531 VEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIV 590

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+F++G CSC DYW
Sbjct: 591 VRDINRFHHFQEGLCSCGDYW 611



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 111/248 (44%), Gaps = 13/248 (5%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           QIH  +I   L +   ++  L+   +    ++ ++ +F     +N   +N +I G  +  
Sbjct: 159 QIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLG 218

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +  F+ ML   V+   +TY    ++ ASL+ L  G  +H L VK+  + D  V  
Sbjct: 219 DGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTN 278

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L DMY + G  + A  VFD     NK + V  WN +I+G S  G  R+A+ +F  M + 
Sbjct: 279 ALIDMYAKCGSIKDARLVFDLM---NKQDEV-SWNAMISGYSMHGLGREALRIFDKMQET 334

Query: 229 NVA----SWVSLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEK 279
            V     ++V ++      G L +    F  M      E  +  +T M+    + G  +K
Sbjct: 335 EVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDK 394

Query: 280 ALAMFFQM 287
           A+ +  ++
Sbjct: 395 AVKLIDEI 402


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 201/653 (30%), Positives = 344/653 (52%), Gaps = 49/653 (7%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           ++P++   +  ++ L   S +    R +  ++   ++F+       ++S+ S   +++  
Sbjct: 53  YQPTDTFLQNRLLHLYAKSGNLSDARDLFDKMSRRDVFS----WNAMLSAYSKSGNVEDL 108

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
            ++FD  +  +   +N +I G + N      +  FV M          T+  V  + + L
Sbjct: 109 RAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFFVRMQEEGFESTDYTHVSVLHACSQL 168

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G+ +H  IV + +    FV   L +MY + G    A  +FD    KN    V+ W
Sbjct: 169 LDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKCGALDQARWLFDRMVNKN----VVSW 224

Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
           N +I+G  + G      +LF      G+MP +   S  +++  + + G + +A + F ++
Sbjct: 225 NSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTIS--NILSAYFQCGYIDEACKTFREI 282

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
            EK  V WT M+ G +QNG+ E AL +F +ML   VR ++FT+ S +S+CA++ +L  G 
Sbjct: 283 KEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQ 342

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
            VH             + +ALVDMY+KCG    A +VF     +++++W +MI G A +G
Sbjct: 343 AVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNG 402

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           +  +A+  +++M++   +PD   F+ +L+AC ++G V+    +F S+   + + P+  H+
Sbjct: 403 KDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHY 462

Query: 437 TVVVNLLSRVGQDSQGYQ----------------------------NSQNSFTKLLQLKP 468
           + ++NLL R G   +                               N + +   L +L P
Sbjct: 463 SCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDP 522

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHK 526
            +   Y++LSNIYAA GRWKDVA VR+LM+   IKK   +S+IE++  VH+F  E   H 
Sbjct: 523 HNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHS 582

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHN-IKEEKEEALGCHSEKLALAFGLIQTTPG 585
             ++I+ +L  ++   +E G+ P T  VLH+ ++EEK +++  HSEKLALAF LI+   G
Sbjct: 583 ETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHG 642

Query: 586 -TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            T I+I+K + +CGDCH  MK+ SKI +R I+LRD  RFH+F +G CSC+D W
Sbjct: 643 RTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 217/728 (29%), Positives = 354/728 (48%), Gaps = 104/728 (14%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           + TA      +++   PS       +++   SS      R++   +   NL   + + + 
Sbjct: 27  ILTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSA 86

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR--LSVR 126
           L + A L + ++    +F     ++   +N L+ G +           +V +LR    VR
Sbjct: 87  L-ARAGLVRDME---RLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVR 142

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+R+T   V    ++L   +LGR +HC I++ G    AF    L DMY ++G    A +V
Sbjct: 143 PSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRV 202

Query: 187 FDETPEKN---------------------------KSESVLLWNVLINGCSKIGYLRKAV 219
           FDE   KN                           +    + W  ++ G ++ G   +A+
Sbjct: 203 FDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEAL 262

Query: 220 ELFGMMP---------------------------------------KKNVASWVSLIDGF 240
           ++F  M                                        + NV    +L+D +
Sbjct: 263 DVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMY 322

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            +   ++ A  +F +M  K ++SWTAMI G+ QNG  E+A+ +F +M   G++ +DFT+ 
Sbjct: 323 SKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLG 382

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S +S+CA + +LE G + H     +       +  ALV +Y KCG+IE A  +F E    
Sbjct: 383 SVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFH 442

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D ++WTA++ G A  G+ ++ I  F+KM+  G +PDG  F+ +L+AC  SG V    ++F
Sbjct: 443 DQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYF 502

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------NSQNSF-------------- 460
            SM+ D+ I P   H+T +++L SR G   Q  +         ++F              
Sbjct: 503 HSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGD 562

Query: 461 --------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     LL+L P++P+SYVLL +++A++G W DVA++R  M+ R +KK+PG S+I+
Sbjct: 563 MEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIK 622

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCH 569
               VH F A    H  ++ I+ KL+ + +   E+GY P    VLH++ + EK   L  H
Sbjct: 623 YKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHH 682

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SEKLA+AFGLI   P   I+IVK L +C DCH+  K+ SKI+ R+I++RD  RFH F +G
Sbjct: 683 SEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNG 742

Query: 629 TCSCRDYW 636
            CSC D+W
Sbjct: 743 ICSCGDFW 750


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 209/635 (32%), Positives = 324/635 (51%), Gaps = 81/635 (12%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPK 92
           ISL+ S  + K++RQIHA++ +        +  Q + + +L  H  +DYA  I D     
Sbjct: 18  ISLLDSGTTFKEIRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKP 77

Query: 93  NLHIFNVLIRGLAENSHFQSCISH--FVFMLRL-----SVRPNRLTYPFVSKSVASLSLL 145
            L   N +IR     +H +S +    F F  R+      ++P+  T  F+ ++   L + 
Sbjct: 78  TLFALNSMIR-----AHCKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMR 132

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  +H + ++ G + D  V+  L  +Y +LG      KVF+     +     +    +
Sbjct: 133 ETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSVSYPD----FVCRTAM 188

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           +  C+                               R GD+  A +LFE MPEK  ++W 
Sbjct: 189 VTACA-------------------------------RCGDVAFARKLFEGMPEKDPIAWN 217

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI+G++Q GE+ +AL +F  M   GV+ N  +++S LSAC ++GAL+ G   H+YI  N
Sbjct: 218 AMISGYAQVGESREALNLFHLMQLEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERN 277

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              +   +GT LVD+YAKCG+++ A  VF   +EK++ TW++ + GLA++G  E+ ++ F
Sbjct: 278 KIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLKLF 337

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
             M   G  P+   F+++L  C   G V      FDSMR ++ IEP + H+  +V+L +R
Sbjct: 338 SLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYAR 397

Query: 446 VGQ-------------------------DSQGYQNSQNSF---TKLLQLKPKHPSSYVLL 477
            G+                          S+ Y+N +       K+L+L+  +  +YVLL
Sbjct: 398 AGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELETSNHGAYVLL 457

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           SNIYA    W +V+ VR  M+ + ++K PG S +EVNG VH F  G   H    EI +  
Sbjct: 458 SNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYNEIDAVW 517

Query: 536 EDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           +DI    R  GY   T  V+ +I +EEKE+AL  HSEK A+AFG++       I+IVK L
Sbjct: 518 KDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKADVPIRIVKNL 577

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
            +CGDCH +    SKI  REI++RD  RFH+FKDG
Sbjct: 578 RVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDG 612



 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 262/469 (55%), Gaps = 37/469 (7%)

Query: 205  LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKG 260
            +I+ C   G   + V + G++ K  V   V +++  M    + GDL  + +LFE +  K 
Sbjct: 643  MISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKN 702

Query: 261  VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            +VSW  MI    QNG AE+ LA F      G++ +  T ++ L  C  +G +     +H 
Sbjct: 703  LVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHG 762

Query: 321  YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
             I    F     I TAL+D+YAK G +E +S VF E    D + WTAM+   A HG    
Sbjct: 763  LIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRD 822

Query: 381  AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
            AI++F+ M++ G  PD   F  +L AC +SG V+    +F++M   Y IEP + H++ +V
Sbjct: 823  AIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMV 882

Query: 441  NLLSRVG--QDSQG-----------------------YQNSQ---NSFTKLLQLKPKHPS 472
            +L+ R G  QD+ G                       Y+++Q    +  +L +L+P+   
Sbjct: 883  DLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGR 942

Query: 473  SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            +Y++LSNIY+A G WKD +R+R LM+++ + +  G+SYIE    +H+F  G   H  +++
Sbjct: 943  NYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEK 1002

Query: 531  IHSKLEDIMAGAR-EQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTI 588
            I  KL++I    + E G+   TE+VLH++ E+ KEE +  HSEK+A+AFGL+  +P   I
Sbjct: 1003 IQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPI 1062

Query: 589  KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             I K L ICGDCH   K  S I +R I++RD+ RFH+F +G+CSCRDYW
Sbjct: 1063 IIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 129/295 (43%), Gaps = 17/295 (5%)

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           KA   FG+M  K     + ++      GD  +   +  ++  + ++      N F    +
Sbjct: 555 KAAIAFGIMSLKADVP-IRIVKNLRVCGDCHQVSMMISKIFNREIIVRDR--NRFHHFKD 611

Query: 277 AEKALAMFFQML------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
               L   F++L      + G R N+ T +S +SAC   G  E GV +H  +  +    +
Sbjct: 612 GRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEE 671

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +  AL+++Y K G++ ++  +F +   K+L++W  MI     +G  E+ + YF    +
Sbjct: 672 VKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRW 731

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
            G +PD   FLA+L  C   G V+L+      + F  F   +    T +++L +++G+  
Sbjct: 732 VGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF-NANTCITTALLDLYAKLGR-- 788

Query: 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                 ++S T  L++      ++  +   YA  G  +D  +   LM    +  D
Sbjct: 789 -----LEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPD 838



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/271 (18%), Positives = 122/271 (45%), Gaps = 15/271 (5%)

Query: 27  NNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           N +T   +IS  +H  N  + +  IH  ++   +    ++   L++       +  +  +
Sbjct: 636 NEVTFLSMISACVHGGNKEEGV-CIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKL 694

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+  + KNL  +N +I    +N   +  +++F     + ++P++ T+  V +    + ++
Sbjct: 695 FEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV 754

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            L +G+H LI+  G   +  +   L D+Y +LG+   +  VF E      S   + W  +
Sbjct: 755 RLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT----SPDSMAWTAM 810

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   +  GY R A++ F +M    ++    ++  L++     G +++    FE M ++  
Sbjct: 811 LAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYR 870

Query: 262 VS-----WTAMINGFSQNGEAEKALAMFFQM 287
           +      ++ M++   ++G  + A  +  +M
Sbjct: 871 IEPRLDHYSCMVDLMGRSGLLQDAYGLIKEM 901


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 192/610 (31%), Positives = 333/610 (54%), Gaps = 70/610 (11%)

Query: 64  RITTQLISSASLHKS---IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
           R T+   +  SLH +   +D AL+ F+  + +++  +N +I G  ++      +  F  +
Sbjct: 171 RNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSI 230

Query: 121 LR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           L+  S++P+R +      + A+L  LS G+ +H  IV++  +    V   L  MY + G 
Sbjct: 231 LKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGG 290

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
              A ++ +++                 G S +                +V ++ +L++G
Sbjct: 291 VEIARRIIEQS-----------------GISDL----------------DVIAFTALLNG 317

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           +++ GD+  A ++F  + +  VV+WTAMI G+ QNG    A+ +F  M+  G R N FT+
Sbjct: 318 YVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTL 377

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            + LSA + V +L  G ++H     +   L  ++G AL  MYAK G+I  A  VF   ++
Sbjct: 378 AAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQ 437

Query: 360 -KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D ++WT+MI  LA HG  E+AI+ F++M+  G +PD   ++ +L+AC + G V+   +
Sbjct: 438 NRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRS 497

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-------------------- 458
           +FD M+  + I+P++ H+  +V+L  R G   + Y+  +N                    
Sbjct: 498 YFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVY 557

Query: 459 --------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                   +  +LL ++P +  +Y  L+N+Y++ G+W D A++R LM+ R +KK+ G S+
Sbjct: 558 KNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSW 617

Query: 511 IEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           +++    H F  E G H    EI+  ++ I    ++ G+ P TE VLH+++ E K++ L 
Sbjct: 618 VQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILR 677

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLA+AFG+I T   TT++I+K L +C DCH+ +K+ SK+  REI++RD TRFH+FK
Sbjct: 678 YHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFK 737

Query: 627 DGTCSCRDYW 636
           DG+CSC+DYW
Sbjct: 738 DGSCSCKDYW 747



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 164/389 (42%), Gaps = 74/389 (19%)

Query: 57  HNLFASSRITTQ-----LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
           H+LF    + T      ++S  +    ++ A  +FD    ++   +  +I G  +   F+
Sbjct: 30  HDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFE 89

Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
             I  FV M++  V P + T   V  S A+     +G+ +H  +VK G+     V   L 
Sbjct: 90  DAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLL 149

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
           +MY + G  + A  VFD    +N S     WN +I+     G +  A+  F ++ ++++ 
Sbjct: 150 NMYAKTGDLKMAKVVFDRMKLRNTSS----WNAMISLHMNCGRVDLALAQFELLSERDIV 205

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DA 290
           SW                                +MI G +Q+G   +AL  F  +L D 
Sbjct: 206 SW-------------------------------NSMIAGCNQHGFDNEALQFFSSILKDT 234

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE-- 348
            ++ + F++ SALSACA +  L  G ++H YI    F   GA+G AL+ MYAK G +E  
Sbjct: 235 SLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIA 294

Query: 349 -------------------------------AASLVFGETKEKDLLTWTAMIWGLAIHGR 377
                                           A  +F   K+ D++ WTAMI G   +G 
Sbjct: 295 RRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGL 354

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
              AI+ FK M+  G  P+     A+L+A
Sbjct: 355 NNDAIEVFKTMVSEGPRPNSFTLAAMLSA 383



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 133/239 (55%), Gaps = 14/239 (5%)

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           SV L N L+N  +K G+   A +LF  MP K   SW +++ G+ ++G L+KA ++F+ +P
Sbjct: 9   SVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIP 68

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            +  VSWT +I G++Q G  E A+ +F  M+   V    FT+ + L++CA  G+   G +
Sbjct: 69  VRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKK 128

Query: 318 VHNYISCNDFGLKGAIGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           VH+++     GL   +  A  L++MYAK G+++ A +VF   K ++  +W AMI   ++H
Sbjct: 129 VHSFVV--KLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMI---SLH 183

Query: 376 ---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
              GR + A+  F+ +    +E D   + +++  C   G    AL FF S+  D  ++P
Sbjct: 184 MNCGRVDLALAQFELL----SERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 117/279 (41%), Gaps = 16/279 (5%)

Query: 3   GHVFNRLTT-AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFA 61
           G+V N L   AI     + S     N+ T   ++S   S  S    +QIHA  I      
Sbjct: 348 GYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEAL 407

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFM 120
           S  +   L +  +   SI+ A  +F+        + +  +I  LA++   +  I  F  M
Sbjct: 408 SPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQM 467

Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLG 178
           L L ++P+ +TY  V  +     L+  GR    L+ K+  + D  +  +  + D++ + G
Sbjct: 468 LTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLM-KNVHKIDPTLSHYACMVDLFGRAG 526

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVS 235
             + A+K  +  P +     V+ W  L++ C     +   + A E   ++   N  ++ +
Sbjct: 527 LLQEAYKFVENMPME---PDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSA 583

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
           L + +   G    A ++ + M  +GV     +SW  + N
Sbjct: 584 LANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQN 622


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  337 bits (865), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 197/584 (33%), Positives = 304/584 (52%), Gaps = 76/584 (13%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           + RP+  T+     + A L  L  G  +      +G + D FV   L  +Y + G    A
Sbjct: 103 AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226
            KVFD  P +++    + W+ ++ G    G    A++++  M                  
Sbjct: 163 VKVFDRMPRRDR----VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                 + +V +  SL+D + + G L  A  +F  M  +  VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           +AMI+GF+QNG++++AL +F  M  +G++ +   +VSAL AC+ +G L+ G  VH +I  
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI-V 337

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             F     +GTA +DMY+KCG++ +A ++F    ++DL+ W AMI     HGR + A+  
Sbjct: 338 RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F++M  +G  PD   F ++L+A  +SG V+    +F  M   + I P+ KH+  +V+LL+
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLA 457

Query: 445 RVGQ----------------------------DSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
           R G                             +++  +  ++    +L+L+P       L
Sbjct: 458 RSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLAL 517

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSK 534
           +SN+YAA  +W  V +VR LM+    KK PG S IE+ G  H F  E   H   +EI SK
Sbjct: 518 VSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSK 577

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           +  +    R+ GY+P TE+V H+++EE KE+ L  HSEKLA+AFGL+ T PGT + I+K 
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKN 637

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L +CGDCH  +KY SKI+ REIV+RD  RFH+FKDG CSCRDYW
Sbjct: 638 LRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 136/256 (53%), Gaps = 7/256 (2%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL----FGMMPKKNVASW 233
           G    A +VF   P   + +S   + + ++ C+++G LR    +    F    K +V   
Sbjct: 88  GSPASALRVFRALPPAARPDSTT-FTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            SL+  + R G +  A ++F++MP +  V+W+ M+ GF   G+   A+ M+ +M + GV+
Sbjct: 147 SSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            ++  ++  + AC     +  G  VH ++  +   +     T+LVDMYAK G ++ A  V
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           FG    ++ ++W+AMI G A +G+ ++A++ F+ M  SG +PD    ++ L AC   G +
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 414 KL--ALNFFDSMRFDY 427
           KL  +++ F   RFD+
Sbjct: 327 KLGRSVHGFIVRRFDF 342



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 129/318 (40%), Gaps = 51/318 (16%)

Query: 31  ETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           E  +I +I +  + + +R    +H  ++ H +       T L+   + +  +D A  +F 
Sbjct: 209 EVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFG 268

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               +N   ++ +I G A+N      +  F  M    ++P+         + +++  L L
Sbjct: 269 LMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKL 328

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H  IV+   +++  +     DMY + G    A  +F+   +++    ++LWN +I 
Sbjct: 329 GRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD----LILWNAMIA 383

Query: 208 GCSKIGYLRKAVELF------GMMPKKNVAS----------------------------- 232
            C   G  + A+ LF      GM P     +                             
Sbjct: 384 CCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNHFKIT 443

Query: 233 -----WVSLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                +V L+D   R G +++A +L   M  E  V  W A+++G   N + E   ++   
Sbjct: 444 PAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADN 503

Query: 287 MLDAGVRANDFTVVSALS 304
           +L+  ++ +D  V++ +S
Sbjct: 504 ILE--LQPDDVGVLALVS 519


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 191/543 (35%), Positives = 290/543 (53%), Gaps = 74/543 (13%)

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
            V Y+  +  H A      G   GA ++F   P ++    V+ WN +++G SK G + +A
Sbjct: 80  AVSYNTLLSCHFAS-----GDADGARRLFASMPVRD----VVSWNTMVSGLSKSGAVEEA 130

Query: 219 VELFGMMPKKNVASWVSLIDGF--------------------------------MRKGDL 246
             +F  MP +N  SW +++ GF                                M  G++
Sbjct: 131 KAVFLAMPVRNSVSWNAMVSGFACSRDMSAAEEWFRNAPEKGDAVLWTAMVSGYMDIGNV 190

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSA 305
            KA E FE MP + +VSW A++ G+ +N  A+ AL +F  M+ +A V+ N  T+ S L  
Sbjct: 191 VKAIEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLG 250

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+ + AL  G ++H +           +GT+LV MY KCG++ +A  +FGE   +D++ W
Sbjct: 251 CSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAW 310

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI G A HG  ++AI  F++M   G EP+   F+A+LTAC ++G     +  F+ M+ 
Sbjct: 311 NAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQE 370

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQ 457
            Y IEP V H++ +V+LL R G+  +                          Y+N   ++
Sbjct: 371 LYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAE 430

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  KL++  P+   +YV L+NIYA   +W DV+RVR  M+  ++ K PG+S+IE+ G +
Sbjct: 431 LAAGKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVM 490

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F +    H     IH KL  +    +  GY+P  ++VLH++ E  K + L  HSEKLA
Sbjct: 491 HEFRSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLA 550

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           ++FGLI T PG T++I K L +CGDCH+  K  SKI  REI+LRD TRFH+F+ G CSC 
Sbjct: 551 ISFGLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCG 610

Query: 634 DYW 636
           DYW
Sbjct: 611 DYW 613



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/236 (27%), Positives = 111/236 (47%), Gaps = 15/236 (6%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASW 233
           V+ G   GA + F  TP K  +     +N L+ G ++ +G L  A  LF  +P  +  S+
Sbjct: 28  VRRGDLTGAEEAFASTPRKTTAT----YNCLLAGYARALGRLADARHLFDRIPTPDAVSY 83

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGV 292
            +L+      GD   A  LF  MP + VVSW  M++G S++G  E+A A+F  M +   V
Sbjct: 84  NTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMPVRNSV 143

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             N   +VS  +    + A E   R  N     D      + TA+V  Y   GN+  A  
Sbjct: 144 SWN--AMVSGFACSRDMSAAEEWFR--NAPEKGD----AVLWTAMVSGYMDIGNVVKAIE 195

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTAC 407
            F     ++L++W A++ G   +   + A++ F+ M+  +  +P+ +   ++L  C
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 18/221 (8%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFV 135
           K+I+Y    F+    +NL  +N ++ G  +NSH    +  F  M+R  +V+PN  T   V
Sbjct: 192 KAIEY----FEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSV 247

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
               ++LS L  G+ +H   +K  +  +  V   L  MY + G    A K+F E   ++ 
Sbjct: 248 LLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRD- 306

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
              V+ WN +I+G ++ G  ++A+ LF  M  + V     ++V+++   +  G       
Sbjct: 307 ---VVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIR 363

Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
            FE M      E  V  ++ M++   + G+ E+A+ +   M
Sbjct: 364 CFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIRSM 404


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 223/689 (32%), Positives = 354/689 (51%), Gaps = 78/689 (11%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K+S  P N  T    +     S+  KQ   IHA ++  + + +  +   LI+  +    +
Sbjct: 311 KASLAP-NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKM 369

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKS 138
             A +IF +    +   +N ++ G  +N  +   +  +  M     +P+ +     ++ S
Sbjct: 370 GEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAAS 429

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             S + L+ G  +H   +K+G++ D  V   L DMY +    +    +FD+ P+K+    
Sbjct: 430 ARSGNTLN-GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD---- 484

Query: 199 VLLWNVLINGCSKIGYLRKAVELFG-----------MMPK---------------KNVAS 232
           V+ W  +I G ++ G   +A+ELF            MM                 K + S
Sbjct: 485 VVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHS 544

Query: 233 WV------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           ++             ++D +   G++  A  +FE +  K VVSWT+MI+ +  NG A +A
Sbjct: 545 YIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEA 604

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           L +F  M + GV  +  ++VS LSA A + AL+ G  +H ++    F L+G++ + LVDM
Sbjct: 605 LELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDM 664

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YA+CG +E +  VF   + KDL+ WT+MI    +HG    AI  F++M      PD   F
Sbjct: 665 YARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAF 724

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-- 458
           +A+L AC +SG +     F +SM+++Y +EP  +H+  +V+LL R     + YQ  +   
Sbjct: 725 VAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGME 784

Query: 459 --------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                     +  KLL++ P++P +YVL+SN+YAAE RWKDV  
Sbjct: 785 VEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEE 844

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAG-AREQGYMP 549
           VR  M+   +KK+PG S+IEV   VH F A    H  + EI+SKL  I    A+E GY+ 
Sbjct: 845 VRMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVA 904

Query: 550 GTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T++VLHN K EEK + L  HSE+LA+A+G++ T  G +++I K L +CGDCH+  K  S
Sbjct: 905 QTKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLIS 964

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  +RE+V+RD  RFH+FK G CSC D W
Sbjct: 965 KFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 206/442 (46%), Gaps = 46/442 (10%)

Query: 9   LTTAIAPTTNIKSSHKPSN-NITETH--IISLIHSSNSTKQLRQIHAQIILHN-LFASSR 64
           +  A    T++ ++  PS  ++ E +  ++ L  S  +  + +Q+HA +I  N LF S  
Sbjct: 92  VNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 151

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           ++T+L+        +  A  +FD    K +  +N +I     N      +  +  M    
Sbjct: 152 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSG 211

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  +  T+P + K+   L     G  +H L +K G     FV   +  MY +     GA 
Sbjct: 212 IPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGAR 271

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
           ++FD  PEK   E V+ WN +I+  S  G   +A+ LFG M K ++A             
Sbjct: 272 QLFDRMPEK---EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 232 ---SWV-----------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
              S++                       +LI  + R G + +A  +F  M +   +SW 
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 388

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           +M++GF QNG   +AL  + +M DAG + +   V+S ++A A+ G    G+++H Y   N
Sbjct: 389 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMKN 448

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                  +G +LVDMYAK  +++    +F +  +KD+++WT +I G A +G + +A++ F
Sbjct: 449 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 508

Query: 386 KKMMYSGTEPDGTVFLAILTAC 407
           +++   G + D  +  +IL AC
Sbjct: 509 REVQLEGIDLDVMMISSILLAC 530



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 45/323 (13%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA-FVRVHLADMYVQLGKTRGAFKVFDE 189
            Y  V +   S   LS G+ +H  ++ S   +++ F+   L  MY + G    A K+FD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 190 TPEKNKSESVLLWNVLI-----NG------------------------------CSKIGY 214
            P K    ++  WN +I     NG                              C  +  
Sbjct: 176 MPHK----TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD 231

Query: 215 LRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMIN 269
            R   E+ G+  K+   S V    S++  + +  DL  A +LF++MPEK  VVSW +MI+
Sbjct: 232 RRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 291

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            +S NG++ +AL +F +M  A +  N +T V+AL AC     ++ G+ +H  +  + + +
Sbjct: 292 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 351

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +  AL+ MYA+ G +  A+ +F    + D ++W +M+ G   +G Y +A+Q++ +M 
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 411

Query: 390 YSGTEPDGTVFLAILTACWYSGQ 412
            +G +PD    ++I+ A   SG 
Sbjct: 412 DAGQKPDLVAVISIIAASARSGN 434



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 1/180 (0%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G L  A +LF+ MP K + +W AMI  +  NGE   +L ++ +M  +G+  +
Sbjct: 156 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 215

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T    L AC  +     G  VH       +     +  ++V MY KC ++  A  +F 
Sbjct: 216 ACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 275

Query: 356 ETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
              EK D+++W +MI   + +G+  +A++ F +M  +   P+   F+A L AC  S  +K
Sbjct: 276 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 335


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 215/695 (30%), Positives = 346/695 (49%), Gaps = 69/695 (9%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           T A+   + +  +   +N  T    +     S+  K   QIHA I+         +   L
Sbjct: 142 TEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANAL 201

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           ++       +  A  IF +   K++  +N ++ G  +N  +   +  F  +    ++P++
Sbjct: 202 VAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQ 261

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           ++   +  +   L  L  G+ +H   +K+G + +  V   L DMY +        + FD 
Sbjct: 262 VSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDL 321

Query: 190 TPEKN--------------------------------KSESVLLWNVLINGCSKIGYLRK 217
              K+                                  ++ ++ ++L+  C  +  L K
Sbjct: 322 MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILL-ACRGLNCLGK 380

Query: 218 AVELFGMMPKKNVASWV---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
             E+ G   +  ++  V   ++ID +   G +  A  +FE +  K VVSWT+MI+ +  N
Sbjct: 381 IKEIHGYTIRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHN 440

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G A KAL +F  M + G+  +  T+VS LSA   +  L+ G  +H +I    F L+G+I 
Sbjct: 441 GLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSIS 500

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
             LVDMYA+CG++E A  +F  TK ++L+ WTAMI    +HG  E A++ F +M      
Sbjct: 501 NTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKII 560

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           PD   FLA+L AC +SG V    +F + M+ +Y +EP  +H+T +V+LL R     + YQ
Sbjct: 561 PDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQ 620

Query: 455 ---NSQNSFT-------------------------KLLQLKPKHPSSYVLLSNIYAAEGR 486
              + QN  T                         KLL+L   +P +YVL+SN++AA GR
Sbjct: 621 IVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGR 680

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG-AR 543
           WKDV  VR  M+   + K+PG S+IEV   +H F +    H    +I+ KL  +     R
Sbjct: 681 WKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKR 740

Query: 544 EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
           E GY+  T++VLHN+ +EEK + L  HSE+LA+A+GL+ T  GT I++ K L +CGDCHS
Sbjct: 741 EGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHS 800

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
                S+  +RE+++RD +RFH+FKDG CSC D+W
Sbjct: 801 FCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 163/362 (45%), Gaps = 42/362 (11%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           IFD  + +++  +N ++ G   N      +  +  M  L V  +  T+P + K+   +  
Sbjct: 14  IFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVED 73

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G  +H L +K G +   FV   L  +Y +     GA K+FD    +N    V+ WN 
Sbjct: 74  LFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRN---DVVSWNS 130

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----------------ASWV-------------- 234
           +I+  S  G   +A+ LF  M K  V                +S++              
Sbjct: 131 IISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSG 190

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L+  ++R G + +A  +F  +  K +V+W +M+ GF QNG   +AL  F+
Sbjct: 191 RVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFY 250

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
            + +A ++ +  +++S + A  ++G L  G  +H Y   N F     +G  L+DMYAKC 
Sbjct: 251 DLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCC 310

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +      F     KDL++WT    G A +  Y QA++  +++   G + D T+  +IL 
Sbjct: 311 CMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILL 370

Query: 406 AC 407
           AC
Sbjct: 371 AC 372



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 76/250 (30%), Positives = 132/250 (52%), Gaps = 8/250 (3%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           YV  G+  GA +++ E      S     + VL+  C  +  L    E+ G+  K    S+
Sbjct: 33  YVSNGEALGALEMYREMRHLGVSFDSYTFPVLLKACGIVEDLFCGAEIHGLAIKYGCDSF 92

Query: 234 V----SLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           V    SL+  + +  D+  A +LF++M     VVSW ++I+ +S NG   +AL +F +ML
Sbjct: 93  VFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEML 152

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            AGV  N +T  +AL AC     ++ G+++H  I  +   L   +  ALV MY + G + 
Sbjct: 153 KAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMP 212

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A+++FG  + KD++TW +M+ G   +G Y +A+++F  +  +  +PD    ++I+ A  
Sbjct: 213 EAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVA-- 270

Query: 409 YSGQVKLALN 418
            SG++   LN
Sbjct: 271 -SGRLGYLLN 279



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 189/452 (41%), Gaps = 58/452 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAEN 107
           +IH   I +   +   +   L++  +    I+ A  +FD    +N  + +N +I   + N
Sbjct: 79  EIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGN 138

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  ML+  V  N  T+    ++    S + LG  +H  I+KSG   D +V 
Sbjct: 139 GMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVA 198

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L  MYV+ GK   A  +F     K+    ++ WN ++ G  + G   +A+E F     
Sbjct: 199 NALVAMYVRFGKMPEAAVIFGNLEGKD----IVTWNSMLTGFIQNGLYSEALEFFYDLQN 254

Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
             + P +                                 N+    +LID + +   +  
Sbjct: 255 ADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSY 314

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
            G  F+ M  K ++SWT    G++QN    +AL +  Q+   G+  +   + S L AC  
Sbjct: 315 GGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRG 374

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG-----TALVDMYAKCGNIEAASLVFGETKEKDLL 363
           +  L     +H Y       ++G +        ++D+Y +CG I+ A  +F   + KD++
Sbjct: 375 LNCLGKIKEIHGYT------IRGGLSDPVLQNTIIDVYGECGIIDYAVRIFESIECKDVV 428

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD-S 422
           +WT+MI     +G   +A++ F  M  +G EPD    ++IL+A      +K         
Sbjct: 429 SWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFI 488

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           +R  + +E S+ +   +V++ +R G     Y+
Sbjct: 489 IRKGFILEGSISN--TLVDMYARCGSVEDAYK 518



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 92/182 (50%), Gaps = 7/182 (3%)

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + + G +  A  +F++M E+ + +W AM+ G+  NGEA  AL M+ +M   GV  + +T 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 300 VSALSACAKVGALEAGVRVHNY---ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
              L AC  V  L  G  +H       C+ F     +  +LV +YAKC +I  A  +F  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVF---VVNSLVALYAKCNDINGARKLFDR 118

Query: 357 TKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              + D+++W ++I   + +G   +A+  F +M+ +G   +   F A L AC  S  +KL
Sbjct: 119 MYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKL 178

Query: 416 AL 417
            +
Sbjct: 179 GM 180



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG++  A ++F +  E+ + TW AM+ G   +G    A++ +++M + G   D   
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 400 FLAILTAC 407
           F  +L AC
Sbjct: 61  FPVLLKAC 68


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  337 bits (865), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 218/676 (32%), Positives = 345/676 (51%), Gaps = 90/676 (13%)

Query: 10  TTAIAPTTNIKSSHKPSNNI-----TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
             A+ P+ +  S+  PS  +     T     +L+    S ++  ++HA  +   +     
Sbjct: 6   AAAVLPSPS--STRHPSGGVQHGVLTADRAAALLAGCASARRASELHAAAVRAGVDQDKA 63

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +  +L  + +    +D A+++    TP    +F       A ++H    + H    L   
Sbjct: 64  VDFRLQRAYAASGRLDLAVALLRR-TPDPTAVFYTS----AIHAHSSRGLHHAALALLSE 118

Query: 125 VRPNRLTYPF---VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
           +  +    P    +S S+ +   L++GR LH   VK  +  + +V   L  MY + G   
Sbjct: 119 MLLSHGLLPTAHTLSASLPACGGLAVGRALHGYAVKLALSGEPYVATALLGMYARAGDAA 178

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
            A  +FD                                  GM P  +V S  +++  + 
Sbjct: 179 AARVLFD----------------------------------GMQPDPHVVSVTAMLTCYA 204

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           + G L  A  LF+ +P K ++ W AM++G++Q+G   +AL +F +ML +GV  ++ +VV 
Sbjct: 205 KMGLLDDARSLFDGLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVL 264

Query: 302 ALSACAKVGALEAGVRVHNYI---SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE-- 356
           ALSA A++G  E+G  +H+++   S     L   +GTAL+DMY KCG++E A  VFG+  
Sbjct: 265 ALSAVAQLGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLG 324

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             ++D++ W AM+ G A+HG   +A+  F ++   G  P    F+ +L AC +SG V   
Sbjct: 325 AGDRDIVAWNAMVNGYAMHGHSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEG 384

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------------ 458
              F SM  +Y IEP V+H+  +V+LL R G+  + ++  Q+                  
Sbjct: 385 RELFRSMAEEYGIEPKVEHYGCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAAC 444

Query: 459 SFTKLLQLKPK-----------HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
              K ++L  +           +  +YVLLSN+YAA G W++V RVR +M+   I+K+PG
Sbjct: 445 RLHKNMELGQRIADHLVANGLANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPG 504

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI----KEE 561
            S +EV   V  F AG   H  A EI++KLE++   AR +G++P TE VLH++       
Sbjct: 505 CSAVEVGRRVVEFVAGDRSHPRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAA 564

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE+AL  HSEKLALAFGLI T PGT IKIVK L  C DCH+++K  S+++ R+IV RD  
Sbjct: 565 KEQALAVHSEKLALAFGLISTPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRN 624

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+F DG+C+C DYW
Sbjct: 625 RFHHFVDGSCTCGDYW 640


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 201/638 (31%), Positives = 335/638 (52%), Gaps = 73/638 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           L+ SS      R++  +   + ++  S   T +I+    +  +  A  + D  T      
Sbjct: 193 LVKSSQLMASARKVFDETPKNQIYEPS--WTTMIAGYVRNDDLVAARELLDGLTYPIDVA 250

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS----LSLLSLGRGLH 152
           +N +I G      ++     F  M  + ++ +  TY  +  +  S    + + + GR +H
Sbjct: 251 WNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVH 310

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             I+++ VE                             P  +   SV   N LI   +K 
Sbjct: 311 GYILRTVVE-----------------------------PSHHFVLSV--NNALITFYTKY 339

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
             + +A  +F  MP +++ SW +++ G++    +++A  +F +MPE+ V++WT MI+G +
Sbjct: 340 DRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLA 399

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS--CNDFGLK 330
           QNG  E+ L +F QM   G+   D+    A++AC+ +G+L+ G ++H+ +    +D GL 
Sbjct: 400 QNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIHSQVIRLGHDSGLS 459

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              G AL+ MY++CG +E+A  VF      D ++W AMI  LA HG   +AI+ F++MM 
Sbjct: 460 A--GNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELFEQMMK 517

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ-- 448
               PD   FL ILTAC ++G +K   ++FD+M   Y I P   H+  +++LL R G   
Sbjct: 518 EDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCRAGMFL 577

Query: 449 DSQGYQNSQ--------------------------NSFTKLLQLKPKHPSSYVLLSNIYA 482
            +Q    S                            +  +LL+L P    +Y++LSN+YA
Sbjct: 578 KAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIILSNMYA 637

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMA 540
           A G+W +VARVR LM+ R +KK+PG S++EV   VH F  +   H   + +++ L+ ++ 
Sbjct: 638 ALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYLQQLVN 697

Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
             ++ GY+P T++VLH+++ E KE +L  HSEKLA+ +G+++   G TI++ K L ICGD
Sbjct: 698 EMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGD 757

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CH+  KY SK+ +REIV+RD  RFH+FK+G CSC +YW
Sbjct: 758 CHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 179/462 (38%), Gaps = 125/462 (27%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH---- 88
           ++  L H S +    R +HA I+      ++ I  +LI+      +I YA  +FD     
Sbjct: 10  YLTQLNHVSTTQIIARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKP 69

Query: 89  -----------------------------FTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
                                         T ++   +N +I   +  +   + ++ FV 
Sbjct: 70  DIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQ 129

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLS----LGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
           M R    P+  T+   S  +++LSL++      + LHC ++K G      V   L   YV
Sbjct: 130 MKRYGFLPDPFTF---SSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYV 186

Query: 176 QLGKT---------RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
               +           A KVFDETP+    E                             
Sbjct: 187 CCASSPLVKSSQLMASARKVFDETPKNQIYE----------------------------- 217

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                SW ++I G++R  DL  A EL + +     V+W AMI+G+ + G  E+A   F +
Sbjct: 218 ----PSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRR 273

Query: 287 MLDAGVRANDFTVVSALSACA----KVGALEAGVRVHNYI------SCNDFGLKGAIGTA 336
           M   G++ +++T  S +SAC     K+G    G +VH YI        + F L  ++  A
Sbjct: 274 MHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVL--SVNNA 331

Query: 337 LVDMYAK-------------------------------CGNIEAASLVFGETKEKDLLTW 365
           L+  Y K                                  IE A+ +F E  E+++LTW
Sbjct: 332 LITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTW 391

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           T MI GLA +G  E+ ++ F +M   G EP    F   +TAC
Sbjct: 392 TVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITAC 433


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  337 bits (864), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 204/660 (30%), Positives = 332/660 (50%), Gaps = 86/660 (13%)

Query: 56  LHNLFASSRITTQLISSASLH------KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H L   S  +  L +   L       + +  A  +FD    ++L  +N ++ G ++N  
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
            +  +     M   +++P+ +T   V  +V++L L+ +G+ +H   +++G +    +   
Sbjct: 217 ARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATA 276

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--------------------- 208
           L DMY + G  + A  +FD   E+N    V+ WN +I+                      
Sbjct: 277 LVDMYAKCGSLKTARLLFDGMLERN----VVSWNSMIDAYVQNENPKEAMVIFQKMLDEG 332

Query: 209 --------------CSKIGYLRK-------AVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
                         C+ +G L +       +VEL      +NV+   SLI  + +  ++ 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVEL---ELDRNVSVVNSLISMYCKCKEVD 389

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +F ++  + +VSW AMI GF+QNG   +AL  F QM    V+ + FT VS ++A A
Sbjct: 390 TAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIA 449

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           ++        +H  +  N       + TALVDMYAKCG I  A L+F    E+ + TW A
Sbjct: 450 ELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNA 509

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           MI G   HG  + A++ F++M      P+G  FL++++AC +SG V+  L  F  M+ +Y
Sbjct: 510 MIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENY 569

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNS 459
            IEPS+ H+  +V+LL R G+ ++ +                              ++  
Sbjct: 570 SIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKV 629

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
             +L +L P+    +VLL+NIY A   W+ V +VR  M R+ ++K PG S +E+   VH 
Sbjct: 630 AERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHS 689

Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAF 577
           F +G   H  +K+I++ LE ++   +E GY+P T  +L    + KE+ L  HSEKLA++F
Sbjct: 690 FFSGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGLEDDVKEQLLSSHSEKLAISF 749

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           GL+ TT GTTI + K L +C DCH+  KY S ++ REI++RD  RFH+FK+G CSC DYW
Sbjct: 750 GLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 218/445 (48%), Gaps = 53/445 (11%)

Query: 10  TTAIAPTTNIKSSHK---------PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF 60
            + ++    I SSH+         P+N + E     L+   +S K+LR I   I  + L+
Sbjct: 8   VSTVSQIPPISSSHRHFLSQRNYIPAN-VYEHPAALLLERCSSLKELRHILPLIFKNGLY 66

Query: 61  ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
                 T+L+S    + S+D A  +F+    K   ++  +++G A+ S     +  FV M
Sbjct: 67  QEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRM 126

Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
               V P    + ++ K     + L +G+ +H L+VKSG   D F    L +MY +  + 
Sbjct: 127 RDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQV 186

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVS---- 235
             A KVFD  PE++    ++ WN ++ G S+ G  R A+E+  +M ++N+  S+++    
Sbjct: 187 HEARKVFDRMPERD----LVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSV 242

Query: 236 ----------------------------------LIDGFMRKGDLKKAGELFEQMPEKGV 261
                                             L+D + + G LK A  LF+ M E+ V
Sbjct: 243 LPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNV 302

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW +MI+ + QN   ++A+ +F +MLD GV+  D +V+ AL ACA +G LE G  +H  
Sbjct: 303 VSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKL 362

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
               +     ++  +L+ MY KC  ++ A+ +FG+ + + +++W AMI G A +GR  +A
Sbjct: 363 SVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEA 422

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTA 406
           + YF +M     +PD   +++++TA
Sbjct: 423 LNYFSQMQARTVKPDTFTYVSVITA 447



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 122/270 (45%), Gaps = 16/270 (5%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           T+  ++  +H+      L   R IH   +   L  +  +   LIS     K +D A S+F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                + +  +N +I G A+N      +++F  M   +V+P+  TY  V  ++A LS+  
Sbjct: 396 GKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITH 455

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             + +H +++++ ++ + FV   L DMY + G    A  +FD   E++    V  WN +I
Sbjct: 456 HAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH----VTTWNAMI 511

Query: 207 NGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           +G    G  + A+ELF  M K     N  +++S+I      G ++   + F  M E   +
Sbjct: 512 DGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSI 571

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQM 287
                 + AM++   + G   +A     QM
Sbjct: 572 EPSMDHYGAMVDLLGRAGRLNEAWDFIMQM 601



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 49/244 (20%), Positives = 106/244 (43%), Gaps = 12/244 (4%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP +  T   +I+ I   + T   + IH  ++ + L  +  +TT L+   +   +I  A 
Sbjct: 435 KP-DTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIAR 493

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            IFD  + +++  +N +I G   +   ++ +  F  M + ++RPN +T+  V  + +   
Sbjct: 494 LIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSG 553

Query: 144 LLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           L+  G +  H +     +E        + D+  + G+   A+    + P K    +V ++
Sbjct: 554 LVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVK---PAVNVY 610

Query: 203 NVLINGCS---KIGYLRKAVE-LFGMMPKKNVASWVSLIDGFMRKGDL-KKAGELFEQMP 257
             ++  C     + +  K  E LF + P+     +  L+    R   + +K G++   M 
Sbjct: 611 GAMLGACQIHKNVNFAEKVAERLFELNPED--GGYHVLLANIYRAASMWEKVGQVRVSML 668

Query: 258 EKGV 261
            +G+
Sbjct: 669 RQGL 672


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  337 bits (863), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 204/661 (30%), Positives = 328/661 (49%), Gaps = 76/661 (11%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            ++IH   +   + +   + T L+   +     + A  +F     ++L  ++ +I  L + 
Sbjct: 349  KEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQT 408

Query: 108  SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             + +  +S F  M    ++PNR+T   +  + A LSLL LG+ +HC  VK+ ++ D    
Sbjct: 409  GYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG 468

Query: 168  VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
              L  MY + G    A   F+    +  S  ++ WN LING ++IG    A+++F     
Sbjct: 469  TALVSMYAKCGFFTAALTTFN----RMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRL 524

Query: 223  -----------GMMPKKNVASWV-----------------------SLIDGFMRKGDLKK 248
                       G++P   + + +                       +LID + + G L  
Sbjct: 525  SAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGSLPS 584

Query: 249  AGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  LF +    K  V+W  +I  + QNG A++A++ F QM       N  T VS L A A
Sbjct: 585  AEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAA 644

Query: 308  KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
             + A   G+  H  I    F     +G +L+DMYAKCG +  +  +F E   KD ++W A
Sbjct: 645  YLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNA 704

Query: 368  MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
            M+ G A+HG  ++AI  F  M  S  + D   F+++L+AC + G V+     F SM   Y
Sbjct: 705  MLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKY 764

Query: 428  FIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNSQNS 459
             I+P ++H+  +V+LL R G   ++ G+                          +  + +
Sbjct: 765  HIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVA 824

Query: 460  FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
               L++L+P++P+ +V+LS+IYA  GRW D  + R+ M    +KK PG S++E+   VH 
Sbjct: 825  LDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVHA 884

Query: 520  FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALA 576
            F  G   H   + +H     ++    + GY+P    VL N++EE KE  L  HSE+LA+ 
Sbjct: 885  FRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAIT 944

Query: 577  FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
            F L+ T PG+TI+IVK L +C DCH+  K+ SKI+ R I++RD TRFH+F+DG CSC DY
Sbjct: 945  FALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCNDY 1004

Query: 636  W 636
            W
Sbjct: 1005 W 1005



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 200/441 (45%), Gaps = 42/441 (9%)

Query: 4   HVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
           H   R  T+IA   +   S   S      H   L+ S      L QIHAQII+   F   
Sbjct: 5   HQLRRSFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSG-FKHH 63

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
              T LI+  SL    D A S+FD     +  ++N +IR    +  +   +  +  M+  
Sbjct: 64  HSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEK 123

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            + P++ T+ FV K+      L  G   H  I + G+E D F+   L DMY ++G  + A
Sbjct: 124 GLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRA 183

Query: 184 FKVFDETPEKNKSESVLLWNVLING-------CSKIGYLR---------KAVELFGMMP- 226
            +VFD+ P+++    V+ WN +I G       C  + + R          +V L  + P 
Sbjct: 184 REVFDKMPKRD----VVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPG 239

Query: 227 ------------------KKNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                             +++ +S VS  LID + + GD+  A  +F+QM ++  VSW  
Sbjct: 240 ICKLSNIELCRSIHGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGT 299

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+ G++ NG   + L +F +M    VR N  + VSA  A A+   LE G  +H       
Sbjct: 300 MMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQR 359

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                 + T L+ MYAKCG  E A  +F   + +DL+ W+A+I  L   G  E+A+  F+
Sbjct: 360 IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQ 419

Query: 387 KMMYSGTEPDGTVFLAILTAC 407
           +M     +P+    ++IL AC
Sbjct: 420 EMQNQKMKPNRVTLMSILPAC 440


>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
          Length = 1033

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 329/607 (54%), Gaps = 43/607 (7%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK---SIDYALSI 85
           I+   ++S++    S  +LRQIHAQ+I  NL       ++LI+  SL      +DYA S+
Sbjct: 4   ISTNPVVSVLDKCKSLCELRQIHAQMIKTNLLNHQFTVSRLIAFCSLSGVSGGLDYASSV 63

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASLS 143
           F      N  IF  LI+G ++ S+    +  +  ML      + + +  P V K+   L 
Sbjct: 64  FSRIQHPNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLL 123

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               GR +H  ++K+ + +D FV   +  MY+  G+   A +VFD  P ++    V+ WN
Sbjct: 124 AFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD----VVSWN 179

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
            +I G  K G +  A ELF  MP++++ S  ++IDG+ + G  + A ++FE M +K VV+
Sbjct: 180 SMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVT 239

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           WT+MI+ + QN    KAL +F +ML  G+R +   +VS LSA A +G +E G  +H Y+S
Sbjct: 240 WTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVS 299

Query: 324 CNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQA 381
            N   L  G IG+AL+DMY+KCG IE A  VF   +  +++  W +MI GLAIHG   +A
Sbjct: 300 MNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREA 359

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F +M     EP+   FL +L+ C + G V+    +F+SM   Y I P ++H+  +++
Sbjct: 360 LDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMID 419

Query: 442 LLSRVG--QDSQGY-QN-------------------------SQNSFTKLLQLKPKHPSS 473
           L  R G  +D+ G  QN                          +++  + ++L P   SS
Sbjct: 420 LFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIELAPDDSSS 479

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGH---KLAKE 530
           YVLLSNIYA  GRW DVA++R +M++R +KK  G S + VBG VH F  G       + +
Sbjct: 480 YVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVBGKVHEFLXGKELDSSYSGQ 539

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           + +K+ ++++  + QGY P    VL +I++E KE  L  HSEK+A AFGLI       I 
Sbjct: 540 VLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAXAFGLIHINKSAPIH 599

Query: 590 IVKKLTI 596
           IVK L I
Sbjct: 600 IVKNLRI 606


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 202/634 (31%), Positives = 327/634 (51%), Gaps = 79/634 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L+S    +  ID A  +FD    +N+  +  L++G   N       S F  M      P 
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKM------PE 138

Query: 129 RLTYPFVSKSVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +     VS +V  +  L  GR    C + +   + D   R  +     + G+   A ++F
Sbjct: 139 KNK---VSWTVMLIGFLQDGRIDDACKLYEMIPDKDNIARTSMIHGLCKEGRVDEAREIF 195

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           DE  E+    SV+ W  ++ G  +   +  A ++F +MP+K   SW S++ G+++ G ++
Sbjct: 196 DEMSER----SVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIE 251

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA--------------------------- 280
            A ELFE MP K V++  AMI+G  Q GE  KA                           
Sbjct: 252 DAEELFEVMPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGF 311

Query: 281 ----LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
               L +F  M   GVR    T++S LS CA + +L  G +VH  +    F +   + + 
Sbjct: 312 ELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASV 371

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEP 395
           L+ MY KCG +  + L+F     KD++ W ++I G A HG  E+A++ F +M  SG T+P
Sbjct: 372 LMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKP 431

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ- 454
           +   F+A L+AC Y+G V+  L  ++SM   + ++P   H+  +V++L R G+ ++  + 
Sbjct: 432 NEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEM 491

Query: 455 ----------------------NSQNSFT-----KLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                 +SQ         KL++++P++  +Y+LLSN+YA++GRW
Sbjct: 492 IDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRW 551

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGARE 544
            DVA +R LM+ R ++K PG S+ EV   VH F  GG   H   + I   L+++    RE
Sbjct: 552 ADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLRE 611

Query: 545 QGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY P   + LH++ +EEK  +L  HSE+LA+A+ L++ + G  I+++K L +C DCH+ 
Sbjct: 612 AGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTA 671

Query: 604 MKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K  SK+ +REI+LRD  RFH+F++G CSC+DYW
Sbjct: 672 IKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 125/246 (50%), Gaps = 20/246 (8%)

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
           R A K+FDE P++N    ++ WN L++G  K G + +A ++F +MP++NV SW +L+ G+
Sbjct: 65  RDARKLFDEMPDRN----IISWNGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGY 120

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
           +  G +  A  LF +MPEK  VSWT M+ GF Q+G  + A  ++  + D     ++    
Sbjct: 121 VHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIPD----KDNIART 176

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S +    K G ++    + + +S           T +V  Y +   ++ A  +F    EK
Sbjct: 177 SMIHGLCKEGRVDEAREIFDEMSERSV----ITWTTMVTGYGQNNRVDDARKIFDVMPEK 232

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL--AILTACWYSGQVKLALN 418
             ++WT+M+ G   +GR E A + F+ M      P   V    A+++     G++  A  
Sbjct: 233 TEVSWTSMLMGYVQNGRIEDAEELFEVM------PVKPVIACNAMISGLGQKGEIAKARR 286

Query: 419 FFDSMR 424
            FDSM+
Sbjct: 287 VFDSMK 292



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 127/301 (42%), Gaps = 57/301 (18%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           NV I   S+IG + +A +LF     K+++SW S++ G+      + A +LF++MP++ ++
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNII 80

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW  +++G+ +NGE ++A  +F  M +                              N +
Sbjct: 81  SWNGLVSGYMKNGEIDEARKVFDLMPE-----------------------------RNVV 111

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           S           TALV  Y   G ++ A  +F +  EK+ ++WT M+ G    GR + A 
Sbjct: 112 S----------WTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTVMLIGFLQDGRIDDAC 161

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
           + ++ +     + D     +++      G+V  A   FD M      E SV   T +V  
Sbjct: 162 KLYEMI----PDKDNIARTSMIHGLCKEGRVDEAREIFDEMS-----ERSVITWTTMVT- 211

Query: 443 LSRVGQDSQGYQNSQNSFTKLLQLKP-KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                    G  N  +   K+  + P K   S+  +   Y   GR +D   +  +M  + 
Sbjct: 212 -------GYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVMPVKP 264

Query: 502 I 502
           +
Sbjct: 265 V 265


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 185/473 (39%), Positives = 276/473 (58%), Gaps = 40/473 (8%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMP 257
           +  L+   +K+  +R+  ++  +  +    S V    +L+  +   G  + A +LFE M 
Sbjct: 143 YPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMA 202

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           E+ +V+W ++ING++ NG   +AL +F +M   GV  + FT+VS LSACA++GAL  G R
Sbjct: 203 ERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRR 262

Query: 318 VHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            H Y+     GL G +  G AL+D+YAKCG+I  A  VF E +EK +++WT++I GLA++
Sbjct: 263 AHVYMV--KVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVN 320

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G  ++A++ FK++   G  P    F+ +L AC + G V    ++F  M+ +Y I P ++H
Sbjct: 321 GFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEH 380

Query: 436 HTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLK 467
           +  +V+LL R G   Q ++  QN                            +  +LLQL+
Sbjct: 381 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLE 440

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
           PKH   YVLLSN+YA+E RW DV +VR  M R  +KK PG S +E+   +H F  G   H
Sbjct: 441 PKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSH 500

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTP 584
              +EI+ KL +I    + +GY+P    VL +I +EEKE AL  HSEK+A+AF LI T  
Sbjct: 501 PQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAA 560

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G  I++VK L +C DCH  +K  SK+  REIV+RD +RFH+FKDG CSC+DYW
Sbjct: 561 GIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 182/396 (45%), Gaps = 49/396 (12%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLI-SSASLHKSIDYA 82
           P + I +  I  L+  ++S  + RQIHA  I H +   +  +   LI +  S    + YA
Sbjct: 34  PKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLLSFCSPMSYA 93

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             IF      N+  +N +IRG AE+ +    +  +  M    + P+  TYPF+ K++A L
Sbjct: 94  HQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKL 153

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G  +H + +++G E   FV+  L  MY   G    A K+F+   E+N    ++ W
Sbjct: 154 MDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN----LVTW 209

Query: 203 NVLINGCSKIGYLRKAVELF------GMMP------------------------------ 226
           N +ING +  G   +A+ LF      G+ P                              
Sbjct: 210 NSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVK 269

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                N+ +  +L+D + + G +++A ++F++M EK VVSWT++I G + NG  ++AL +
Sbjct: 270 VGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEALEL 329

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMY 341
           F ++   G+  ++ T V  L AC+  G ++ G      +   ++G+   I     +VD+ 
Sbjct: 330 FKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMK-EEYGIVPKIEHYGCMVDLL 388

Query: 342 AKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHG 376
            + G + +A   +     + + + W  ++    IHG
Sbjct: 389 GRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 424



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 91/168 (54%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F Q+    + +W  MI G++++     AL ++ QM  + +  +  T    L A AK
Sbjct: 93  AHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAK 152

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +  +  G +VH+    N F     +   LV MYA CG+ E+A  +F    E++L+TW ++
Sbjct: 153 LMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSV 212

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           I G A++GR  +A+  F++M   G EPDG   +++L+AC   G + L 
Sbjct: 213 INGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 260


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/655 (31%), Positives = 319/655 (48%), Gaps = 99/655 (15%)

Query: 79  IDYALSIFD----HFTPK--NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
           +D A S+F      F+P   ++  +N +I  L +       +     M+ L VRP+ +T+
Sbjct: 226 VDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTF 285

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
                + + L +L+LGR +H +++K   +  ++FV   L DMY    K   A +VFD  P
Sbjct: 286 ASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVP 345

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWV---------- 234
           E   S  + +WN +I G ++ G   +A+ELF       G  P +   S V          
Sbjct: 346 EP--SRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGF 403

Query: 235 -----------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                                  +L+D + R G++  A  +F  +  + VVSW  +I G 
Sbjct: 404 AGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGC 463

Query: 272 SQNGEAEKALAMFFQM------------LDAG----VRANDFTVVSALSACAKVGALEAG 315
              G A +A  +  +M             + G       N+ T+++ L  CA + A   G
Sbjct: 464 VVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARG 523

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             +H Y   +      A+G+ALVDMYAKCG + A+  VF     ++++TW  +I    +H
Sbjct: 524 KEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMH 583

Query: 376 GRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           G  ++A+  F +M   G   P+   F+A L AC +SG V   L  F  M  D+ ++P+  
Sbjct: 584 GLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPD 643

Query: 435 HHTVVVNLLSRVGQDSQGY-----------------------------QNSQNSFTKLLQ 465
            H  VV++L R G+  + Y                             +  + +  +L +
Sbjct: 644 LHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFE 703

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L+P   S YVLL NIY+A G W     VR  M+R+ + K+PG S+IE++G +HRF AG  
Sbjct: 704 LEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWIELDGAIHRFMAGES 763

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQT 582
            H  + E+H+ ++ +    R +GY P T  VLH++ E EK   L  HSEKLA+AFGL++ 
Sbjct: 764 SHPASAEVHAHMDALWERMRREGYAPDTSCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRA 823

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            PG  I++ K L +C DCH   K+ SK+  R+IVLRD  RFH+F+DG+CSC DYW
Sbjct: 824 PPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/186 (32%), Positives = 89/186 (47%), Gaps = 10/186 (5%)

Query: 235 SLIDGFMRKGDLKKAGELFEQM-----PEKG-VVSWTAMINGFSQNGEAEKALAMFFQML 288
           +L+  + R G +  A  LF        P  G VV+W  MI+   Q G   +A+ + + M+
Sbjct: 215 ALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMV 274

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNI 347
             GVR +  T  SAL AC+++  L  G  +H  +  + D      + +ALVDMYA    +
Sbjct: 275 SLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKV 334

Query: 348 EAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAIL 404
            +A  VF    E  + L  W AMI G A  G  E+A++ F +M   +G  P  T    +L
Sbjct: 335 ASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVL 394

Query: 405 TACWYS 410
            AC  S
Sbjct: 395 PACARS 400



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 71/322 (22%), Positives = 122/322 (37%), Gaps = 47/322 (14%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   +  +  +   L+   +    +D A  IF    P+++  +N LI G     H
Sbjct: 409 MHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGH 468

Query: 110 FQSCISHFVFMLRLS-----------------VRPNRLTYPFVSKSVASLSLLSLGRGLH 152
                   V  ++L                    PN +T   +    A+L+  + G+ +H
Sbjct: 469 AAEAF-QLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIH 527

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
              V+  +E D  V   L DMY + G    +  VFD  P +N    V+ WNVLI      
Sbjct: 528 GYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRN----VITWNVLIMAYGMH 583

Query: 213 GYLRKAVELFGMMPK-----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-- 265
           G   +AV LF  M        N  ++++ +      G + +  ELF  M     V  T  
Sbjct: 584 GLGDEAVALFDEMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPD 643

Query: 266 ---AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC--------AKVGA--- 311
               +++   + G  ++A ++   M     + + ++  S L AC         +V A   
Sbjct: 644 LHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSAWS--SLLGACRLHRNVELGEVAAERL 701

Query: 312 --LEAGVRVHNYISCNDFGLKG 331
             LE G   H  + CN +   G
Sbjct: 702 FELEPGEASHYVLLCNIYSAAG 723


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 220/702 (31%), Positives = 349/702 (49%), Gaps = 112/702 (15%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID--YALSIFDHFTPK 92
           ISL+ + N+  ++ QIH+Q I   L ++    T++I      +S D  YA  +FD     
Sbjct: 39  ISLLETCNTMYEINQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQP 98

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-L 151
           ++ I+N +I+G +  +  +S +S +  ML  +++P+  T+PF+ K       L  G+  L
Sbjct: 99  SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFTKDMALKYGKVLL 158

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           +  ++   ++ + FV+     ++   G    A K+FD          V+ WNV+++G ++
Sbjct: 159 NHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFD----MGDGWEVVTWNVVLSGYNR 214

Query: 212 IGYLRKAVELFGMMPKK------------------------------------------N 229
                ++  LF  M KK                                          N
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQ-------------------------------MPE 258
           +    +LID F   G++  A  +F++                               MPE
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPE 334

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           +  VSWTAMI+G+ +    ++ L +F  M  + V+ ++FT+VS L+ACA +GALE G   
Sbjct: 335 RDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWA 394

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
             YI  N       IG AL+DMY KCGN+E A  +F E ++KD  TWTAMI GLA +G  
Sbjct: 395 KTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHG 454

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           E+A+  F  M+ +   PD   ++ ++ AC + G V    +FF +M   + I+P++ H+  
Sbjct: 455 EEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGC 514

Query: 439 VVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPKH 470
           +V+LL R G   +                              Q ++ +  ++L+L+P++
Sbjct: 515 MVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPEN 574

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
            + YVLL NIYAA  +WK++  VR +M  R IKK PG S +E+NG V+ F AG   H  +
Sbjct: 575 GAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQS 634

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTT 587
           KEI++KLE++       GY P T  V  ++ EE KE AL  HSEKLA+A+ LI +  G T
Sbjct: 635 KEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVT 694

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           I+IVK L +C DCH +    SK+  RE+++RD TRFH+F+ G
Sbjct: 695 IRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 208/627 (33%), Positives = 325/627 (51%), Gaps = 49/627 (7%)

Query: 45  KQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           + LR  HA+++    L +  AS+ +  +LI + +   ++  A ++ D    +    FNVL
Sbjct: 32  RSLRAAHARLLFLLRLPSHPASAAVRVKLIQAYAACAALPAARAVLDASPDRTTVFFNVL 91

Query: 101 IRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
           +RGL   S  +  +  F  M     +  P+  TYP   KS A+   L LGR +H    + 
Sbjct: 92  LRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLVLGRQIHSSTARL 151

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           G++ + FV      MY + G+   A+++F+E   ++    V+ WN +I+G +  G   +A
Sbjct: 152 GLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRD----VVSWNAMISGFAHAGLFGRA 207

Query: 219 VELFGMM-----PKKNVASWVSLID--GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
           +++F  +     PK +  +  S++   G  R  D+     +F++M  KG++SW AM+  +
Sbjct: 208 MDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFKGLISWNAMLAVY 267

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           + N    +A+ +F +M   G+  +  T+ + L +C +V AL  G R+H  I         
Sbjct: 268 TNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSM 327

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +  AL+DMYA CG ++ A  VF     +D+++WT++I     HG   +AI  F+KM   
Sbjct: 328 LLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQ 387

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G EPD   F+AIL AC ++G + +  ++F SM  ++ I P ++H+  +V+LL R G   +
Sbjct: 388 GLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIRE 447

Query: 452 GYQ---------NSQN-------------------SFTKLLQLKPKHPSSYVLLSNIYAA 483
            Y          N +                    +   LL+L PK    YVLLSNIYA 
Sbjct: 448 AYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYAR 507

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
            GRW DV+ VR++M+ + IKK PG S  E+   VH F  G   H  +K I+ KL +++  
Sbjct: 508 AGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRR 567

Query: 542 AREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            RE GY P  E  LH+++EE +E  L  HSEKLA+AF LI T PGT I+I   L  C DC
Sbjct: 568 IREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDC 627

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFK 626
           H   K  S I+ REI+L+D  R HY K
Sbjct: 628 HHAAKLISTIAGREIILKDVNRIHYMK 654


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 210/662 (31%), Positives = 338/662 (51%), Gaps = 90/662 (13%)

Query: 56  LHNLFASSRITTQLISSASLH------KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H L   S  +  L +   L       + ++ A  +FD    ++L  +N ++ G ++N  
Sbjct: 157 IHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGM 216

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
            +  +     M   +++P+ +T   V  +V++L L+S+G+ +H   ++SG +    +   
Sbjct: 217 ARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTA 276

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--------------------- 208
           L DMY + G    A ++FD   E+N    V+ WN +I+                      
Sbjct: 277 LVDMYAKCGSLETARQLFDGMLERN----VVSWNSMIDAYVQNENPKEAMLIFQKMLDEG 332

Query: 209 --------------CSKIGYLRK-------AVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
                         C+ +G L +       +VEL G+   +NV+   SLI  + +  ++ 
Sbjct: 333 VKPTDVSVMGALHACADLGDLERGRFIHKLSVEL-GL--DRNVSVVNSLISMYCKCKEVD 389

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +F ++  + +VSW AMI GF+QNG    AL  F QM    V+ + FT VS ++A A
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIA 449

Query: 308 KVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           ++        +H  +  SC D  +   + TALVDMYAKCG I  A L+F    E+ + TW
Sbjct: 450 ELSITHHAKWIHGVVMRSCLDKNV--FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTW 507

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            AMI G   HG  + A++ F++M     +P+G  FL++++AC +SG V+  L  F  M+ 
Sbjct: 508 NAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKE 567

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQ 457
           +Y IE S+ H+  +V+LL R G+ ++ +                              ++
Sbjct: 568 NYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAE 627

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  +L +L P     +VLL+NIY A   W+ V +VR  M R+ ++K PG S +E+   V
Sbjct: 628 KAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEV 687

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLAL 575
           H F +G   H  +K+I++ LE ++   +E GY+P T  VL    + KE+ L  HSEKLA+
Sbjct: 688 HSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAI 747

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD 634
           +FGL+ TT GTTI + K L +C DCH+  KY S ++ REIV+RD  RFH+FK+G CSC D
Sbjct: 748 SFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGD 807

Query: 635 YW 636
           YW
Sbjct: 808 YW 809



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 208/418 (49%), Gaps = 43/418 (10%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           N+ E     L+   +S K+LRQI   +  + L+      T+L+S    + S+D A  +F+
Sbjct: 34  NVYEHPAALLLERCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFE 93

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               K   +++ +++G A+ S     +  FV M    V P    + ++ K     + L +
Sbjct: 94  PIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRV 153

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ +H L+VKSG   D F    L +MY +  +   A KVFD  PE++    ++ WN ++ 
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERD----LVSWNTIVA 209

Query: 208 GCSKIGYLRKAVELFGMMPKKNV-ASWVS------------------------------- 235
           G S+ G  R A+E+   M ++N+  S+++                               
Sbjct: 210 GYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDS 269

Query: 236 -------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                  L+D + + G L+ A +LF+ M E+ VVSW +MI+ + QN   ++A+ +F +ML
Sbjct: 270 LVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKML 329

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
           D GV+  D +V+ AL ACA +G LE G  +H            ++  +L+ MY KC  ++
Sbjct: 330 DEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVD 389

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            A+ +FG+ + + L++W AMI G A +GR   A+ YF +M     +PD   +++++TA
Sbjct: 390 TAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITA 447



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 123/270 (45%), Gaps = 16/270 (5%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           T+  ++  +H+      L   R IH   +   L  +  +   LIS     K +D A S+F
Sbjct: 336 TDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMF 395

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                + L  +N +I G A+N      +++F  M   +V+P+  TY  V  ++A LS+  
Sbjct: 396 GKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITH 455

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             + +H ++++S ++ + FV   L DMY + G    A  +FD   E++    V  WN +I
Sbjct: 456 HAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH----VTTWNAMI 511

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           +G    G+ + A+ELF  M     K N  +++S+I      G ++   + F  M E   +
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQM 287
                 + AM++   + G   +A     QM
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQM 601



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 41/82 (50%)

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           T LV ++ + G+++ A+ VF     K  + +  M+ G A     ++A+Q+F +M Y   E
Sbjct: 73  TKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVE 132

Query: 395 PDGTVFLAILTACWYSGQVKLA 416
           P    F  +L  C    ++++ 
Sbjct: 133 PVVYNFTYLLKVCGDEAELRVG 154



 Score = 39.3 bits (90), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 51/262 (19%), Positives = 110/262 (41%), Gaps = 15/262 (5%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   A+   + ++S     +  T   +I+ I   + T   + IH  ++   L  +  +TT
Sbjct: 418 RPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTT 477

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            L+   +   +I  A  IFD  + +++  +N +I G   +   ++ +  F  M + +++P
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKP 537

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKS---GVEYDAFVRVHLADMYVQLGKTRGAF 184
           N +T+  V  + +   L+    GL C  +      +E        + D+  + G+   A+
Sbjct: 538 NGVTFLSVISACSHSGLVE--AGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAW 595

Query: 185 KVFDETPEKNKSESVLLWNVLINGCS---KIGYLRKAVE-LFGMMPKKNVASWVSLIDGF 240
               + P K    +V ++  ++  C     + +  KA E LF + P      +  L+   
Sbjct: 596 DFIMQMPVK---PAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDD--GGYHVLLANI 650

Query: 241 MRKGDL-KKAGELFEQMPEKGV 261
            R   + +K G++   M  +G+
Sbjct: 651 YRAASMWEKVGQVRVSMLRQGL 672


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/493 (36%), Positives = 297/493 (60%), Gaps = 38/493 (7%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK-AVELFGMMPKKNV-ASWVS 235
           G    + KVF++ PE N    V+ W  +I    + G   K A+ELF  M   +V     S
Sbjct: 9   GSVDDSRKVFEQMPEHN----VMSWTAIITAYVQSGECDKEAIELFCKMISASVNCVGNS 64

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LI  + R G ++ A + F+ + EK +VS+ A+++G+++N ++E+A  +F ++ D G+  +
Sbjct: 65  LISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGIS 124

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            FT  S LS  A +GA+  G ++H  +    +     I  AL+ MY++CGNIEAA  VF 
Sbjct: 125 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 184

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E +++++++WT+MI G A HG   +A++ F KM+ +GT+P+   ++A+L+AC + G +  
Sbjct: 185 EMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISE 244

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS----------------- 456
               F+SM  ++ I P ++H+  +V+LL R G   ++  + NS                 
Sbjct: 245 GQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGAC 304

Query: 457 ---------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                    +++   +L+ +P  P++Y+LLSN++A+ G+WKDV ++R  M+ R++ K+ G
Sbjct: 305 RVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAG 364

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
            S+IEV   VHRF  G   H  A +I+ +L+ + +  +E GY+P T++VLH+I+EE KE+
Sbjct: 365 CSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQ 424

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
            L  HSEK+A+AFGLI T+    I+I K L +CGDCH+ +KY S  + REIV+RD+ RFH
Sbjct: 425 FLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFH 484

Query: 624 YFKDGTCSCRDYW 636
           + K+G CSC DYW
Sbjct: 485 HIKNGVCSCNDYW 497



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 78/357 (21%), Positives = 152/357 (42%), Gaps = 22/357 (6%)

Query: 25  PSNNITE-THIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           P +N+   T II+  + S    K+  ++  ++I  ++   + +   LIS  +    ++ A
Sbjct: 22  PEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASV---NCVGNSLISMYARSGRMEDA 78

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
              FD    KNL  +N ++ G A+N   +     F  +    +  +  T+  +    AS+
Sbjct: 79  RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 138

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G  +H  ++K G + +  +   L  MY + G    AF+VF+E  ++N    V+ W
Sbjct: 139 GAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRN----VISW 194

Query: 203 NVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQM-P 257
             +I G +K G+  +A+E+F  M     K N  ++V+++      G + +  + F  M  
Sbjct: 195 TSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK 254

Query: 258 EKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           E G+V     +  M++   ++G   +A+     M    + A+     + L AC   G  E
Sbjct: 255 EHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM---PLMADALVWRTLLGACRVHGNTE 311

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            G      I   +     A    L +++A  G  +    +    KE++L+      W
Sbjct: 312 LGRHAAEMILEQEPDDPAAY-ILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSW 367


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 197/656 (30%), Positives = 339/656 (51%), Gaps = 71/656 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA I+ +    ++ +   LI      + +  A ++FD    ++   +N++I G A   
Sbjct: 226 QVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIG 285

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            +      F  M    V+ +R  +    K  +    L+  + LHC +VK+G E+   +R 
Sbjct: 286 FYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT 345

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L   Y +      AFK+F      + + +V+ W  +I G  +     KAV+LF  M ++
Sbjct: 346 ALMVTYSKCSSVDEAFKLFSMA---DAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSRE 402

Query: 229 NV-----------------------------------ASWVSLIDGFMRKGDLKKAGELF 253
            V                                   +   +L+D +++ G++ ++  +F
Sbjct: 403 GVRPNHFTYSTVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVF 462

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-L 312
             +P K +V+W+AM+ G +Q  ++EKA+ +F Q++  GV+ N++T  S ++AC+   A +
Sbjct: 463 YSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATV 522

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           E G ++H     +       + +AL+ MY+K GNIE+A  VF   +E+D+++W +MI G 
Sbjct: 523 EHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGY 582

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
             HG  ++A++ F+ M   G   D   F+ +LTAC ++G V+    +F+ M  DY I+  
Sbjct: 583 GQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKK 642

Query: 433 VKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQNSFTKLL 464
           ++H++ +V+L SR G   +                          ++N    + +  KL+
Sbjct: 643 IEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIWRTLLAACRVHRNLELGKLAAEKLV 702

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
            L+P     YVLLSNI+A  G W++ A VR LM  R +KK+ G S+IE+   +  F AG 
Sbjct: 703 SLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGD 762

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQ 581
             H  +  +++KLE++    ++ GY P T +V H+++EE +EA L  HSE+LA+A+GLI 
Sbjct: 763 VSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIA 822

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             PG  I+I K L ICGDCH++++  S I +R +++RD+ RFH+FK G CSC  YW
Sbjct: 823 LPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 182/401 (45%), Gaps = 50/401 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+H Q +         + T L+      +  +    IFD    KN+  +  L+ G A N
Sbjct: 124 RQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARN 183

Query: 108 SHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                 I H +  +++  V PN  T+  V  ++A  S++  G  +H +IVK+G E+  FV
Sbjct: 184 GLNDEVI-HLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFV 242

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L  MY++      A  VFD    ++     + WN++I G + IG+  +  ++F  M 
Sbjct: 243 CNALICMYLKSEMVGDAEAVFDSMVVRDS----VTWNIMIGGYAAIGFYLEGFQMFHRMR 298

Query: 227 KKNVASWVSLI-------------------------DGFMRKGDLKKA-----------G 250
              V    ++                          +G+    D++ A            
Sbjct: 299 LAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVD 358

Query: 251 ELFE--QMPEKG--VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           E F+   M +    VV+WTAMI GF QN   EKA+ +F QM   GVR N FT  + L+  
Sbjct: 359 EAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA-- 416

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
            K  +L +  ++H  I    +    ++ TAL+D Y K GN+  ++ VF     KD++ W+
Sbjct: 417 GKPSSLLS--QLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWS 474

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           AM+ GLA     E+A++ F +++  G +P+   F +++ AC
Sbjct: 475 AMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINAC 515



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 43/268 (16%)

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------- 227
           + R A ++FDETP K+ S     +N L+   S+  + R+A+ LF  +             
Sbjct: 53  RPRYAHQLFDETPLKDISH----YNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLS 108

Query: 228 ----------------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
                                       ++V+   SL+D +M+  D +    +F++M  K
Sbjct: 109 CALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIK 168

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            VVSWT++++G+++NG  ++ + +  QM   GV  N FT  + L A A    +E GV+VH
Sbjct: 169 NVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             I  N F     +  AL+ MY K   +  A  VF     +D +TW  MI G A  G Y 
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +  Q F +M  +G +   TVF   L  C
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLC 316



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/262 (22%), Positives = 123/262 (46%), Gaps = 14/262 (5%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S + +   +  L Q+HAQII         + T L+ +     ++  +  +F     K++ 
Sbjct: 412 STVLAGKPSSLLSQLHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIV 471

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV-ASLSLLSLGRGLHCL 154
            ++ ++ GLA+    +  +  F+ +++  V+PN  T+  V  +  +S + +  G+ +H  
Sbjct: 472 AWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHAT 531

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            VKSG      V   L  MY + G    A KVF    E++    ++ WN +I G  + G 
Sbjct: 532 AVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERD----IVSWNSMITGYGQHGD 587

Query: 215 LRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWT 265
            +KA+E+F +M  + +     +++ ++      G +++  + F  M      +K +  ++
Sbjct: 588 AKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYS 647

Query: 266 AMINGFSQNGEAEKALAMFFQM 287
            M++ +S+ G  +KA+ +   M
Sbjct: 648 CMVDLYSRAGMFDKAMDIINGM 669


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 213/644 (33%), Positives = 325/644 (50%), Gaps = 80/644 (12%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF-DHFTP 91
           H +S +    +  +L+QIHA+++   L       T+ +S         YA  +F + F  
Sbjct: 13  HNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGFDR 72

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            +  ++N++IRGL+ +      +  +  ML  S   N  T+PF+ K+ ++LS       +
Sbjct: 73  PDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAFQETTQI 132

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I K G  +D +    L + Y   G  + A  +FD   E +     + WN +I G  K
Sbjct: 133 HAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPD----AVSWNSVIKGYVK 188

Query: 212 IGYLRKAVELFGMMPKKNVA-SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
            G +  A+ LF  MP+KN A SW ++I G+++ G  K+A +LF +M              
Sbjct: 189 AGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEM-------------- 234

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
             QN               + V  ++ ++ SALSAC+++GALE G  +H+Y +     + 
Sbjct: 235 --QN---------------SNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRID 277

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +   L+DMYAKCG +E A  VF   K K +  WTA+I G A HG   +AI  F +M  
Sbjct: 278 SVLCCVLIDMYAKCGEMEEALGVFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQN 337

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
            G +P+   F A+LTAC Y+G V+   + F+++  DY ++P+++H+  +V+LL R     
Sbjct: 338 MGVKPNAITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRA---- 393

Query: 451 QGYQNSQNSFTKLLQLKP---------------------------------KHPSSYVLL 477
            G  N  N F + + LKP                                  H   YV +
Sbjct: 394 -GLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNIELGEKIGEILIEMDSNHGGRYVHM 452

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           +NI+A   +W   A  R LM+ + + K PG S I + G  H F AG   H   +EI +K 
Sbjct: 453 ANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKW 512

Query: 536 EDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
             +     E GY+P  E +L ++   EEKE  +  HSEKLA+ +GL++T PGTTI+I+K 
Sbjct: 513 RFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKN 572

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L +C DCH +M   SKI +R+IV+RD TRFH+FKDG CSC DYW
Sbjct: 573 LRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDGKCSCGDYW 616



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 56/265 (21%), Positives = 108/265 (40%), Gaps = 40/265 (15%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIIL----HNLFA-SSRITTQLISSASLHK-- 77
           P N  T   ++    + ++ ++  QIHA I      H+++A +S I +  ++    H   
Sbjct: 107 PHNAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHL 166

Query: 78  ------------------------SIDYALSIFDHFTPKNLHI-FNVLIRGLAENSHFQS 112
                                    +D AL++F     KN  I +  +I G  +    + 
Sbjct: 167 LFDRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKE 226

Query: 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172
            +  F  M   +V P+ ++      + + L  L  G+ +H    K+    D+ +   L D
Sbjct: 227 ALQLFHEMQNSNVPPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLID 286

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV----ELFGMMPKK 228
           MY + G+   A  VF       K++SV +W  LI+G +  G  R+A+    E+  M  K 
Sbjct: 287 MYAKCGEMEEALGVFKNM----KTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKP 342

Query: 229 NVASWVSLIDGFMRKGDLKKAGELF 253
           N  ++ +++      G +++   +F
Sbjct: 343 NAITFTAVLTACSYTGLVEEGKSVF 367


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 211/642 (32%), Positives = 314/642 (48%), Gaps = 67/642 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N++T   +IS        +   Q+   I    L  ++ +   L+       +ID A  IF
Sbjct: 239 NSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIF 298

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KNL ++N ++         +  ++    ML+   RP+R+T      + + L  +S
Sbjct: 299 DECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVS 358

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+  H  ++++G+E    V   + +MY++ GK   A +V                    
Sbjct: 359 CGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRV-------------------- 398

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                          F  M  K   SW SLI GF+R GD++ A ++F  MP+  +VSW  
Sbjct: 399 ---------------FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNT 443

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI    Q    ++A+ +F  M   G+ A+  T+V   SAC  +GAL+    +H YI   D
Sbjct: 444 MIGALVQESMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKD 503

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                 +GTALVDM+A+CG+ ++A  VF +  ++D+  WTA I  +A+ G    AI+ F 
Sbjct: 504 IHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFD 563

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M+  G +PDG VF+A+LTA  + G V+   + F SM+  Y I P   H+  +V+LL R 
Sbjct: 564 EMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRA 623

Query: 447 GQDSQGYQ--NSQN--------------------------SFTKLLQLKPKHPSSYVLLS 478
           G  S+     NS                            +  ++ +L P+    +VLLS
Sbjct: 624 GLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDPERTGIHVLLS 683

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIYA+ GRW DVA+VR  ++ +   K PG S IE+NG +  F  G   H     I   L+
Sbjct: 684 NIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFEFTTGDESHPEMTHIEPMLK 743

Query: 537 DIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
           +I    R+ GY+P    VL ++ E EKE  L  HSEKLA+AF LI T  G  I++ K L 
Sbjct: 744 EICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIAFALISTGQGMPIRVAKNLR 803

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IC DCHS  K  SK   REI++RD  RFH+F+ G CSC DYW
Sbjct: 804 ICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDYW 845



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 135/548 (24%), Positives = 240/548 (43%), Gaps = 104/548 (18%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSAS---LHKSIDYALSIFDHFTPKN-----L 94
           +  +L+Q+H+QI  + L       T LISS +     +S++YA    + F   N      
Sbjct: 45  TMTELKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTH 104

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           ++F+ LIRG +        I  F  ++ +   P+  T+PFV  +    + L+ G  +H  
Sbjct: 105 YMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGA 164

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           IVK G E D FV   L   Y + G+     +VFD+  E+N    V+ W  LI G +K G 
Sbjct: 165 IVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERN----VVSWTSLIGGYAKRGC 220

Query: 215 LRKAVELF------GMMPK--------------------KNVASWV-------------S 235
            ++AV LF      G+ P                     + V + +             +
Sbjct: 221 YKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNA 280

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+D +M+ G + KA ++F++  +K +V +  +++ + + G A + LA+  +ML  G R +
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPD 340

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKC--------- 344
             T++SA+SAC+++  +  G   H Y+  N  GL+G   +  A+++MY KC         
Sbjct: 341 RITMLSAVSACSELDDVSCGKWCHGYVLRN--GLEGWDNVCNAIINMYMKCGKQEMACRV 398

Query: 345 ----------------------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
                                 G++E+A  +F    + DL++W  MI  L     +++AI
Sbjct: 399 FDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAI 458

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR-----FDYFIEPSVKHHT 437
           + F+ M   G   D    + + +AC Y G + LA      ++     FD  +       T
Sbjct: 459 ELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHL------GT 512

Query: 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
            +V++ +R G      Q++   F K+++   +  S++       A EG       +   M
Sbjct: 513 ALVDMFARCGDP----QSAMQVFNKMVK---RDVSAWTAAIGAMAMEGNGTGAIELFDEM 565

Query: 498 QRRSIKKD 505
            ++ IK D
Sbjct: 566 LQQGIKPD 573


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 192/564 (34%), Positives = 307/564 (54%), Gaps = 83/564 (14%)

Query: 151 LHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
           LH L ++SG+   D +    L  MY    +   A + FDE P+ N     ++   + +G 
Sbjct: 115 LHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNP----VIVTAMASGY 170

Query: 210 SKIGYLRKAVELFGMMPKKNVASWV----------------------------------- 234
            +   +  ++ELF  M   + AS V                                   
Sbjct: 171 VRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFER 230

Query: 235 ------SLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                 +++D + + G  DL+ A ++F+ M E+ VVSW +MI  ++QNG + +A+ ++ +
Sbjct: 231 NAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSK 289

Query: 287 MLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
           ML+   G++ N   + + L ACA  GA++ G R+HN +          +GT++VDMY+KC
Sbjct: 290 MLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKC 349

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +E AS  F + KEK++L+W+AMI G  +HGR ++A++ F +M  SG  P+   F+++L
Sbjct: 350 GRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVL 409

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------- 453
            AC ++G +     ++++M+ ++ IE  V+H+  +V+LL R G   + Y           
Sbjct: 410 AACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPD 469

Query: 454 -----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                            + ++ S  +L +L   +   YVLLSNIYA    WKDV R+R L
Sbjct: 470 AAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLL 529

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           ++ R I+K PG+S  E+ G ++ F  G   H    EI+S LE ++   +E GY+P T  V
Sbjct: 530 VKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSV 589

Query: 555 LHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           LH++ +EEKE AL  HSEKLA+AF L+ + P + I I+K L +C DCH+ MK+ +KI++R
Sbjct: 590 LHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITER 649

Query: 614 EIVLRD-TRFHYFKDGTCSCRDYW 636
           EI++RD  RFH+FKDG CSCRDYW
Sbjct: 650 EIIIRDLQRFHHFKDGLCSCRDYW 673



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 29/265 (10%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPF 134
           + ++ A  +FD    +++  +N +I   A+N      I  +  ML +   ++ N +    
Sbjct: 248 RDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSA 306

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           V  + A    +  G+ +H  +V+ G+E + +V   + DMY + G+   A + F +  EKN
Sbjct: 307 VLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 366

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAG 250
               +L W+ +I G    G  ++A+E+F  M     + N  +++S++      G L +  
Sbjct: 367 ----ILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 422

Query: 251 ELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             +  M      E GV  +  M++   + G  ++A ++  +M    V+ +     + LSA
Sbjct: 423 YWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM---KVKPDAAIWGALLSA 479

Query: 306 CAKVGALEAGVRVHNYISCNDFGLK 330
           C          R+H  +   +  +K
Sbjct: 480 C----------RIHKNVELAEMSVK 494



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IH Q++   L  +  + T ++   S    ++ A   F     KN+  ++ +I G   +
Sbjct: 321 KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 380

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-----VKSGVEY 162
              Q  +  F  M R  +RPN +T+  V  + +   LL  GR  +  +     +++GVE 
Sbjct: 381 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE- 439

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
                 H   M   LG+     + +    E        +W  L++ C     + K VEL 
Sbjct: 440 ------HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACR----IHKNVELA 489

Query: 223 GMMPKK 228
            M  K+
Sbjct: 490 EMSVKR 495


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 201/611 (32%), Positives = 323/611 (52%), Gaps = 55/611 (9%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           K  + A  +FD    +++  +N +I G   N   +  +  +  M+ L +  +  T   V 
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
              A+   LSLG+ +H L +KS  E        L DMY + G   GA +VF++  E+N  
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN-- 316

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
             V+ W  +I G ++ G    A++L   M K+    +V +  S++    R G L    ++
Sbjct: 317 --VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 253 FEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV----------RANDFT 298
            + +     E  +    A+++ +++ G  E A ++F  M+   +          + +  T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +   L ACA + ALE G  +H YI  N +     +  ALVD+Y KCG +  A L+F    
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KDL++WT MI G  +HG   +AI  F +M  +G EPD   F++IL AC +SG ++    
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------- 455
           FF  M+ D+ IEP ++H+  +V+LLSR G  S+ Y+                        
Sbjct: 555 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNY 614

Query: 456 -----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                ++    ++ +L+P++   YVLL+NIYA   +W++V R+R  + ++ ++K+PG S+
Sbjct: 615 HDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSW 674

Query: 511 IEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEAL 566
           IE+ G V+ F +G    H  +K I S L+ +    +E+G+ P T++ L N  E +KE AL
Sbjct: 675 IEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMAL 734

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+AFGL+   P  TI++ K L +CGDCH + K+ SK ++REIVLRD+ RFH+F
Sbjct: 735 CGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHF 794

Query: 626 KDGTCSCRDYW 636
           KDG CSCR +W
Sbjct: 795 KDGYCSCRGFW 805



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 160/345 (46%), Gaps = 41/345 (11%)

Query: 110 FQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGR-----GLHCLIVKSGVEYD 163
           F SCI      +R+S  P R + +     +   L    LG       L C+  KS +E  
Sbjct: 46  FSSCIP-----IRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETK 100

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAV 219
            +  V      +QL     +F    +     KS SV     L   L++  +  G L++  
Sbjct: 101 TYGSV------LQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGR 154

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKK--------------------AGELFEQMPEK 259
            +F  M KKNV  W  ++  + + GD K+                    A ELF+++ ++
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR 214

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            V+SW +MI+G+  NG  E+ L ++ QM+  G+  +  T++S L  CA  G L  G  VH
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           +    + F  +      L+DMY+KCG+++ A  VF +  E+++++WT+MI G    GR +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
            AI+  ++M   G + D     +IL AC  SG +    +  D ++
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 169/379 (44%), Gaps = 30/379 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H+  I  +       +  L+   S    +D AL +F+    +N+  +  +I G   +
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I     M +  V+ + +    +  + A    L  G+ +H  I  + +E + FV 
Sbjct: 331 GRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVC 390

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN--------------GCSKIG 213
             L DMY + G    A  VF     K+    ++ WN +I                C+ + 
Sbjct: 391 NALMDMYAKCGSMEAANSVFSTMVVKD----IISWNTMIGELKPDSRTMACVLPACASLS 446

Query: 214 YLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
            L +  E+ G + +   +S      +L+D +++ G L  A  LF+ +P K +VSWT MI 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+  +G   +A+A F +M DAG+  ++ + +S L AC+  G LE G R   YI  NDF +
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNI 565

Query: 330 KGAIG--TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYF 385
           +  +     +VD+ ++ GN+  A   F ET     D   W A++ G   +   E A +  
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKA-YEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVA 624

Query: 386 KKMMYSGTEPDGTVFLAIL 404
           +++     EP+ T +  +L
Sbjct: 625 ERVFE--LEPENTGYYVLL 641



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 34  IISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I S++H+   S S    + +H  I  +N+ ++  +   L+   +   S++ A S+F    
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMV 414

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            K++  +N +I  L  +S   +C                     V  + ASLS L  G+ 
Sbjct: 415 VKDIISWNTMIGELKPDSRTMAC---------------------VLPACASLSALERGKE 453

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I+++G   D  V   L D+YV+ G    A  +FD  P K+    ++ W V+I G  
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD----LVSWTVMIAGYG 509

Query: 211 KIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
             GY  +A+  F  M    +     S++S++      G L++    F  M      E  +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
             +  M++  S+ G   KA    ++ ++    A D T+  AL
Sbjct: 570 EHYACMVDLLSRTGNLSKA----YEFMETLPIAPDATIWGAL 607


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 176/433 (40%), Positives = 263/433 (60%), Gaps = 32/433 (7%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           ++D +++ GD+  AG +F  +     V+WT+MI+G   NG  ++AL ++ +M  + V  +
Sbjct: 71  ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPD 130

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           ++T  + + A + V ALE G ++H  +   D      +GT+LVDMYAKCGNIE A  +F 
Sbjct: 131 EYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFK 190

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +   +++  W AM+ GLA HG  E+A+  FK M   G EPD   F+ IL+AC ++G    
Sbjct: 191 KMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSE 250

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDS----------------------- 450
           A  +  SM  DY IEP ++H++ +V+ L R G  Q++                       
Sbjct: 251 AYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGAC 310

Query: 451 --QG-YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
             QG  +  +    +L  L+P   ++YVLLSNIYAA  RW DV   R +M+R+++KKDPG
Sbjct: 311 RIQGDVEXGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPG 370

Query: 508 WSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEE 564
           +S+I+V   +H F  +   H  A  I+ K+E++M   RE GY+P TE+VL +++ EEKE 
Sbjct: 371 FSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKER 430

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
           +L  HSEKLA+A+GLI T   TTI+++K L +CGDCH+ +KY SK+ +REIVLRD  RFH
Sbjct: 431 SLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFH 490

Query: 624 YFKDGTCSCRDYW 636
           +F+DG CSC DYW
Sbjct: 491 HFRDGVCSCGDYW 503



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 122/282 (43%), Gaps = 16/282 (5%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q +QIHA  I     +   + + ++        +  A  +F++ +  +   +  +I G  
Sbjct: 48  QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 107

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           +N +    +  +  M +  V P+  T+  + K+ + ++ L  GR LH  ++K     D F
Sbjct: 108 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPF 167

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L DMY + G    A+++F +   +N    + LWN ++ G ++ G   +AV LF  M
Sbjct: 168 VGTSLVDMYAKCGNIEDAYRLFKKMNVRN----IALWNAMLVGLAQHGNAEEAVNLFKSM 223

Query: 226 PKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGE 276
               +     S++ ++      G   +A E    MP     E  +  ++ +++   + G 
Sbjct: 224 KSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 283

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
            ++A  +   M     +A+     + L AC   G +E G RV
Sbjct: 284 VQEADKVIETM---PFKASASINRALLGACRIQGDVEXGKRV 322



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 95/190 (50%), Gaps = 5/190 (2%)

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+ G+    + +KAL +F  +  +G +++  T+ +A  AC  +  L+ G ++H +     
Sbjct: 1   MMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAG 60

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F     + + ++DMY KCG++  A +VF      D + WT+MI G   +G  +QA++ + 
Sbjct: 61  FDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYH 120

Query: 387 KMMYSGTEPDGTVFLAILTA--CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           +M  S   PD   F  ++ A  C  + +    L+  + ++ D   +P V   T +V++ +
Sbjct: 121 RMRQSRVMPDEYTFATLIKASSCVTALEQGRQLH-ANVIKLDCVSDPFVG--TSLVDMYA 177

Query: 445 RVGQDSQGYQ 454
           + G     Y+
Sbjct: 178 KCGNIEDAYR 187



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/202 (23%), Positives = 93/202 (46%), Gaps = 7/202 (3%)

Query: 36  SLIHSSN---STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           +LI +S+   + +Q RQ+HA +I  +  +   + T L+   +   +I+ A  +F     +
Sbjct: 136 TLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR 195

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGL 151
           N+ ++N ++ GLA++ + +  ++ F  M    + P+R+++  +  + +   L S     L
Sbjct: 196 NIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYL 255

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS--ESVLLWNVLINGC 209
           H +    G+E +      L D   + G  + A KV +  P K  +     LL    I G 
Sbjct: 256 HSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGD 315

Query: 210 SKIGYLRKAVELFGMMPKKNVA 231
            + G  R A  LF + P  + A
Sbjct: 316 VEXGK-RVAARLFALEPFDSAA 336


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 202/611 (33%), Positives = 323/611 (52%), Gaps = 55/611 (9%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           K  + A  +FD    +++  +N +I G   N   +  +  +  M+ L +  +  T   V 
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
              A    LSLG+ +H L +KS  E        L DMY + G   GA +VF++  E+N  
Sbjct: 121 VGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN-- 178

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
             V+ W  +I G ++ G+   A+ L   M K+    +V +  S++    R G L    ++
Sbjct: 179 --VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 236

Query: 253 FEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGV----------RANDFT 298
            + +    + S      A+++ +++ G  E A ++F  M+   +          + +  T
Sbjct: 237 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRT 296

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +   L ACA + ALE G  +H YI  N +     +  ALVD+Y KCG +  A L+F    
Sbjct: 297 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 356

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KDL++WT MI G  +HG   +AI  F +M  +G EPD   F++IL AC +SG ++    
Sbjct: 357 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 416

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------------- 453
           FF  M+ D+ IEP ++H+  +V+LLSR G  S+ Y                         
Sbjct: 417 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIY 476

Query: 454 ---QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
              + ++    ++ +L+P++   YVLL+NIYA   +W++V R+R  + ++ ++K+PG S+
Sbjct: 477 HDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSW 536

Query: 511 IEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEAL 566
           IE+ G V+ F +G    H  +K+I S L+ +    +E+GY P T++ L N  E +KE AL
Sbjct: 537 IEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMAL 596

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+AFGL+   P  TI++ K L +CGDCH + K+ SK ++REIVLRD+ RFH+F
Sbjct: 597 CGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHF 656

Query: 626 KDGTCSCRDYW 636
           KDG CSCR +W
Sbjct: 657 KDGYCSCRGFW 667



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/255 (30%), Positives = 134/255 (52%), Gaps = 15/255 (5%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L   Y   G  +   +VFD   +KN    V LWN +++  +KIG  ++++ LF +M +K 
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKN----VYLWNFMVSEYAKIGDFKESICLFKIMVEKG 57

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           +    S           + A ELF+++ ++ V+SW +MI+G+  NG  E+ L ++ QM+ 
Sbjct: 58  IEGKRS-----------ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMY 106

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G+  +  T++S L  CAK G L  G  VH+    + F  +      L+DMY+KCG+++ 
Sbjct: 107 LGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDG 166

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  VF +  E+++++WT+MI G    G  + AI   ++M   G + D     +IL AC  
Sbjct: 167 ALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACAR 226

Query: 410 SGQVKLALNFFDSMR 424
           SG +    +  D ++
Sbjct: 227 SGSLDNGKDVHDYIK 241



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 170/380 (44%), Gaps = 30/380 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H+  I  +       +  L+   S    +D AL +F+    +N+  +  +I G   +
Sbjct: 133 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 192

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I     M +  V+ + +    +  + A    L  G+ +H  I  + +  + FV 
Sbjct: 193 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC 252

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN--------------GCSKIG 213
             L DMY + G   GA  VF     K+    ++ WN ++                C+ + 
Sbjct: 253 NALMDMYAKCGSMEGANSVFSTMVVKD----IISWNTMVGELKPDSRTMACILPACASLS 308

Query: 214 YLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
            L +  E+ G + +   +S      +L+D +++ G L  A  LF+ +P K +VSWT MI 
Sbjct: 309 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 368

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+  +G   +A+A F +M DAG+  ++ + +S L AC+  G LE G R   YI  NDF +
Sbjct: 369 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNI 427

Query: 330 KGAIG--TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYF 385
           +  +     +VD+ ++ GN+  A   F ET     D   W A++ G  I+   E A +  
Sbjct: 428 EPKLEHYACMVDLLSRTGNLSKA-YKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 486

Query: 386 KKMMYSGTEPDGTVFLAILT 405
           +++     EP+ T +  +L 
Sbjct: 487 ERVFE--LEPENTGYYVLLA 504



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 50/301 (16%)

Query: 34  IISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I S++H+   S S    + +H  I  +N+ ++  +   L+   +   S++ A S+F    
Sbjct: 217 ITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMV 276

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            K++  +N ++  L  +S   +CI                  P    + ASLS L  G+ 
Sbjct: 277 VKDIISWNTMVGELKPDSRTMACI-----------------LP----ACASLSALERGKE 315

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I+++G   D  V   L D+YV+ G    A  +FD  P K+    ++ W V+I G  
Sbjct: 316 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD----LVSWTVMIAGYG 371

Query: 211 KIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
             GY  +A+  F  M    +     S++S++      G L++    F  M      E  +
Sbjct: 372 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 431

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
             +  M++  S+ G   KA    ++ ++    A D T+          GAL  G R+++ 
Sbjct: 432 EHYACMVDLLSRTGNLSKA----YKFIETLPIAPDATI---------WGALLCGCRIYHD 478

Query: 322 I 322
           I
Sbjct: 479 I 479



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/213 (19%), Positives = 87/213 (40%), Gaps = 51/213 (23%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  +   GDLK+   +F+ M +K V  W  M++ +++ G+ ++++ +F  M++ G+   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
                                                               E+AS +F 
Sbjct: 62  --------------------------------------------------RSESASELFD 71

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +  ++D+++W +MI G   +G  E+ +  +K+MMY G + D    +++L  C  SG + L
Sbjct: 72  KLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSL 131

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
                 S+      E  +     ++++ S+ G 
Sbjct: 132 G-KAVHSLAIKSSFERRINFSNTLLDMYSKCGD 163



 Score = 38.9 bits (89), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 48/243 (19%), Positives = 99/243 (40%), Gaps = 10/243 (4%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYA 82
           KP +  T   I+    S ++ ++ ++IH   IL N ++S R +   L+        +  A
Sbjct: 291 KPDSR-TMACILPACASLSALERGKEIHGY-ILRNGYSSDRHVANALVDLYVKCGVLGLA 348

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             +FD    K+L  + V+I G   + +    I+ F  M    + P+ +++  +  + +  
Sbjct: 349 RLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHS 408

Query: 143 SLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            LL  G R  + +     +E        + D+  + G    A+K  +  P    +    +
Sbjct: 409 GLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLP---IAPDATI 465

Query: 202 WNVLINGCS---KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           W  L+ GC     I    K  E    +  +N   +V L + +      ++   + E++ +
Sbjct: 466 WGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGK 525

Query: 259 KGV 261
           KG+
Sbjct: 526 KGL 528


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 210/666 (31%), Positives = 329/666 (49%), Gaps = 47/666 (7%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R  T+  P   +   + P    T   +  ++ +    K LR +H++II  +L  +S +  
Sbjct: 22  RKVTSSVPKLELDQKNSPKE--TAFMLGQVLDTYPDLKTLRTVHSRIISEDLRYNSSLGV 79

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
           +L+ + +  K +  A  +FD    +N+ I NV+IR    N  ++  I  F  M    V+P
Sbjct: 80  KLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYVNNGFYREGIQVFGTMCSCHVKP 139

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +  T+P V K+ +    + +G+ +H    K G+    FV   L  MY + G    A  V 
Sbjct: 140 DHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTLFVGNGLVSMYGKCGFLSEARLVL 199

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRK 243
           DE   ++    V+ WN L+ G ++      A+E+   M    ++    +  SL+      
Sbjct: 200 DEMSRRD----VVSWNSLVAGYAQNQRFDDALEVCREMESVKISHDAGTMASLLPAVSNT 255

Query: 244 G--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
              ++    ++F +M +K +VSW  MI  + +N    +A+ ++  M   G   +  ++ S
Sbjct: 256 TTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITS 315

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L AC    AL  G ++H YI          +  AL+DMYAKCG ++ A  VF   K +D
Sbjct: 316 VLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRD 375

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           +++WTAMI      GR   A+  F KM  SG  PD   F+  L AC ++G ++   + F 
Sbjct: 376 VVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFK 435

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------- 458
            M   Y I P ++H   +V+LL R G+  + Y+  Q                        
Sbjct: 436 LMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNT 495

Query: 459 -----SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
                +  KL QL P+    YVLLSNIYA  GRW++V  +R +M+ + +KK+PG S +EV
Sbjct: 496 DIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEV 555

Query: 514 NGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHS 570
           N  +H F  G   H  + EI+ +L+ ++   +E GY+P +E  LH+++EE KE  L  HS
Sbjct: 556 NRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHS 615

Query: 571 EKLALAFGLIQT---TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
           EKLA+ F L+ T        I+I K L ICGDCH   K  S+I+ REI++RDT RFH F+
Sbjct: 616 EKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFR 675

Query: 627 DGTCSC 632
            G CSC
Sbjct: 676 FGVCSC 681


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 216/657 (32%), Positives = 318/657 (48%), Gaps = 94/657 (14%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSR------ITTQLISSASLHKSID------- 80
           + +L+  S + +Q++Q HA++ +  L AS        +  +L+     H+  D       
Sbjct: 35  LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94

Query: 81  --YALSIFDHFTPKNLHIFNVLIRGLAEN------SHFQSCISH-FVFMLRLSVRPNRLT 131
             Y L++F      +    N L+R L         S F+    H F F+L  +   N L 
Sbjct: 95  YAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLL--ASISNHLN 152

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
               S S  S     LG  +H L VK+G   D FVR  L   Y   G      +VFDE P
Sbjct: 153 AAGPSASACSF----LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELP 208

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                                               ++V +W  ++ G++R G +  A E
Sbjct: 209 RV----------------------------------RDVLTWNEVLAGYVRAGMMTVARE 234

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F++MP +  +SW+ ++ G+ +  E E AL +F  M++ GVR N   VV+ALSA A++G 
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           LE G  VHN +  +   +   +G ALVDMYAKCG +  A  VF   + +D+  W AMI G
Sbjct: 295 LEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICG 354

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           LA HG    A++ F++ +  G  P    F+ +L  C  SG V     +F  +   Y IEP
Sbjct: 355 LAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEP 414

Query: 432 SVKHHTVVVNLLSRVG------QDSQGYQNSQNSF----------------------TKL 463
            ++H+  +V+LL R G      +  +G   + +                         KL
Sbjct: 415 EMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKL 474

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           ++L P H   YVLLS IYA   +W +V  VR LM  R   K  GWS +E +G VH+F  G
Sbjct: 475 IELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVG 534

Query: 524 G--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLI 580
              HK + +I+  L+ I     E GY+P    VLH+I +EEK  A+  HSE+LA+A+G I
Sbjct: 535 DTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFI 594

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
               G+ I+IVK L +CGDCH   K  + + QREI++RD +RFH+ K+G CSC DYW
Sbjct: 595 VLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 201/611 (32%), Positives = 322/611 (52%), Gaps = 55/611 (9%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           K  + A  +FD    +++  +N +I G   N   +  +  +  M+ L +  +  T   V 
Sbjct: 199 KRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
              A+   LSLG+ +H L +KS  E        L DMY + G   GA +VF++  E+N  
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN-- 316

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
             V+ W  +I G ++ G    A++L   M K+    +V +  S++    R G L    ++
Sbjct: 317 --VVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 253 FEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV----------RANDFT 298
            + +     E  +    A+++ +++ G  E A ++F  M+   +          + +  T
Sbjct: 375 HDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRT 434

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +   L ACA + ALE G  +H YI  N +     +  ALVD+Y KCG +  A L+F    
Sbjct: 435 MACVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KDL++WT MI G  +HG   +AI  F +M  +G EPD   F++IL AC +SG ++    
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------- 455
           FF  M+ D+ IEP ++H+  +V+LLSR G  S+ Y+                        
Sbjct: 555 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNY 614

Query: 456 -----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                ++    ++ +L+P++   YVLL+NIYA   +W++V R+R  + ++ ++K+PG S+
Sbjct: 615 HDIELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSW 674

Query: 511 IEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEAL 566
           IE+ G V+ F +G    H  +K I S L+ +    +E+G+ P T++ L N  E +KE AL
Sbjct: 675 IEIKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMAL 734

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
             HSEKLA+AFGL+   P  TI++ K L +CGDCH + K+ SK ++REIVLRD  RFH+F
Sbjct: 735 CGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHF 794

Query: 626 KDGTCSCRDYW 636
           KDG CSCR +W
Sbjct: 795 KDGYCSCRGFW 805



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 160/345 (46%), Gaps = 41/345 (11%)

Query: 110 FQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGR-----GLHCLIVKSGVEYD 163
           F SCI      +R+S  P R + +     +   L    LG       L C+  KS +E  
Sbjct: 46  FSSCIP-----IRISATPTRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETK 100

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAV 219
            +  V      +QL     +F    +     KS SV     L   L++  +  G L++  
Sbjct: 101 TYSSV------LQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGR 154

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKK--------------------AGELFEQMPEK 259
            +F  M KKNV  W  ++  + + GD K+                    A ELF+++ ++
Sbjct: 155 RVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR 214

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            V+SW +MI+G+  NG  E+ L ++ QM+  G+  +  T++S L  CA  G L  G  VH
Sbjct: 215 DVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVH 274

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           +    + F  +      L+DMY+KCG+++ A  VF +  E+++++WT+MI G    GR +
Sbjct: 275 SLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
            AI+  ++M   G + D     +IL AC  SG +    +  D ++
Sbjct: 335 GAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 67/282 (23%), Positives = 120/282 (42%), Gaps = 41/282 (14%)

Query: 34  IISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I S++H+   S S    + +H  I  +N+ ++  +   L+   +   S++ A S+F    
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMV 414

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            K++  +N +I  L  +S   +C                     V  + ASLS L  G+ 
Sbjct: 415 VKDIISWNTMIGELKPDSRTMAC---------------------VLPACASLSALERGKE 453

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I+++G   D  V   L D+YV+ G    A  +FD  P K+    ++ W V+I G  
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD----LVSWTVMIAGYG 509

Query: 211 KIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
             GY  +A+  F  M    +     S++S++      G L++    F  M      E  +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
             +  M++  S+ G   KA    ++ ++    A D T+  AL
Sbjct: 570 EHYACMVDLLSRTGNLSKA----YEFIETLPIAPDATIWGAL 607


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 214/680 (31%), Positives = 341/680 (50%), Gaps = 88/680 (12%)

Query: 37  LIHSSNSTKQLRQIHAQII----LH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           L+ ++       Q+HA  +    LH N+FAS      L+ +      +  A  +FD    
Sbjct: 75  LVRAAPGPASAAQLHACALRLGLLHPNVFASG----SLVHAYLRFGRVAEAYRVFDEMPE 130

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +++  +N ++ GL  N+     ++    M+   V  + +T   V      L   +L   +
Sbjct: 131 RDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVM 190

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H   VK G+  + FV   L D+Y +LG    A  VF     ++    ++ WN +I+   +
Sbjct: 191 HVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRD----LVTWNSIISANEQ 246

Query: 212 IGYLRKAVELF-GMMPK-------------------------KNVASWV----------- 234
            G +  AVELF GMM                           K+V  +V           
Sbjct: 247 GGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDII 306

Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-A 290
              +++D + +   +  A ++F+ +P++ VVSW  +I G+ QNG A +A+ ++  M +  
Sbjct: 307 AGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHE 366

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G++    T VS L A + +G L+ G+R+H         L   + T L+D+YAKCG +  A
Sbjct: 367 GLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEA 426

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F     +    W A+I GL +HG   +A+  F +M     +PD   F+++L AC ++
Sbjct: 427 MFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHA 486

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-------- 462
           G V    +FFD M+  Y I P  KH+T +V++L R GQ  + ++  Q+   K        
Sbjct: 487 GLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGA 546

Query: 463 --------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                               L +L P++   YVL+SN+YA  G+W  V  VR+L++R+++
Sbjct: 547 LLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNL 606

Query: 503 KKDPGWSYIEVNGHVHRFEAG----GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           +K PGWS +EV G V  F +G     H   +EI   L D++A  +  GY+P   +VL ++
Sbjct: 607 QKTPGWSSMEVKGSVSVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDV 666

Query: 559 KE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +E EKE+ L  HSE+LA+AFG+I T PGT + I K L +CGDCHS  KY SKI++REI++
Sbjct: 667 EEDEKEQILNNHSERLAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIV 726

Query: 618 RDT-RFHYFKDGTCSCRDYW 636
           RD  RFH+FKDG CSC D+W
Sbjct: 727 RDANRFHHFKDGHCSCGDFW 746


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 200/625 (32%), Positives = 327/625 (52%), Gaps = 67/625 (10%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D AL +F     K+   +N ++    +N  +   I  F  M++    P+      +  +
Sbjct: 315 VDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSA 374

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK--- 195
           V  L  L  GR +H   VK  ++ D  +   L DMY++      + +VFD    K+    
Sbjct: 375 VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSW 434

Query: 196 -------------SESV---------------LLWNVLINGCSKIGYLRKAVELFGMMPK 227
                        SE++               ++   ++  CS +  +    ++     +
Sbjct: 435 TTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIR 494

Query: 228 KNVASWV---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
             +   +    +ID +   G++  A  +FE + +K +V+WT+M+N F++NG   +A+A+F
Sbjct: 495 NGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALF 554

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +ML+AG++ +   +V  L A A + +L  G  +H ++    F ++GA+ ++LVDMY+ C
Sbjct: 555 GKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGC 614

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G++  A  VF E K KD++ WTAMI    +HG  +QAI  FK+M+ +G  PD   FLA+L
Sbjct: 615 GSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALL 674

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------ 458
            AC +S  V     + D M   Y ++P  +H+  VV+LL R GQ  + Y+  ++      
Sbjct: 675 YACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPK 734

Query: 459 ----------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                                 +  KLL+L+P +P +YVL+SN++A  G+W +V  +RT 
Sbjct: 735 SVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTK 794

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQG-YMPGTEW 553
           M  + ++KDP  S+IE+   VH F A    H+ ++ IH KL +I    R +G Y+  T +
Sbjct: 795 MTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSF 854

Query: 554 VLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           VLH++ +EEK + L  HSE+LA++FGLI T  GT ++I K L +CGDCH   K  SK+ +
Sbjct: 855 VLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFE 914

Query: 613 REIVLRDT-RFHYFKDGTCSCRDYW 636
           REIV+RD  RFH+F  GTCSC D+W
Sbjct: 915 REIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 184/430 (42%), Gaps = 66/430 (15%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD---AFVRVHLADMYVQLGKTRGA 183
           P    Y +V   VA    +S GR LH   V +G   D    F+   L  MY + G+   A
Sbjct: 53  PPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDA 112

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----------GMMPKKNVASW 233
            ++FD  P +    +V  WN LI  C   G   +AV ++          G  P     + 
Sbjct: 113 HRLFDGMPAR----TVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLAS 168

Query: 234 V---------------------------------SLIDGFMRKGDLKKAGELFEQMPE-K 259
           V                                 +L+  + + G L  A  +FE M + +
Sbjct: 169 VLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGR 228

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            V SW + I+G  QNG   +AL +F +M   G   N +T V  L  CA++  L  G  +H
Sbjct: 229 DVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELH 288

Query: 320 N-YISC-NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
              + C  +F ++     AL+ MYA+CG +++A  VF E  +KD ++W +M+     +  
Sbjct: 289 AALLKCGTEFNIQC---NALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRL 345

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
           Y +AI +F +M+ +G  PD    +++L+A  + G++   +N  +     Y ++  +    
Sbjct: 346 YAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRL---INGREV--HAYAVKQRLDSDL 400

Query: 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD-VARVRTL 496
            + N L  +       + S   F +   ++ K   S+  +   YA   R+ + + + RT 
Sbjct: 401 QIANTLMDMYIKCYSVECSARVFDR---MRIKDHVSWTTIIACYAQSSRYSEAIGKFRT- 456

Query: 497 MQRRSIKKDP 506
            Q+  IK DP
Sbjct: 457 AQKEGIKVDP 466



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/420 (24%), Positives = 166/420 (39%), Gaps = 50/420 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSR---ITTQLISSASLHKSIDYALSIFDHFT 90
           ++ L+    +  + RQ+HA  +            + T+L+        +  A  +FD   
Sbjct: 61  VLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMP 120

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-----VRPNRLTYPFVSKSVASLSLL 145
            + +  +N LI     +      +  +  M R S       P+  T   V K+  +    
Sbjct: 121 ARTVFSWNALIGACLSSGGAGEAVGVYRAM-RASEPVAGAAPDGCTLASVLKACGAEGDG 179

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  +H L VKSG++    V   L  MY + G    A +VF+   +      V  WN  
Sbjct: 180 RCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRD---GRDVASWNSA 236

Query: 206 INGCSKIGYLRKAVELFGMMPKKN--------------VASWVSLIDG------------ 239
           I+GC + G   +A++LF  M                   A    L  G            
Sbjct: 237 ISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGT 296

Query: 240 ------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                       + R G +  A  +F ++ +K  +SW +M++ + QN    +A+  F +M
Sbjct: 297 EFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEM 356

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           +  G   +   +VS LSA   +G L  G  VH Y           I   L+DMY KC ++
Sbjct: 357 VQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSV 416

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E ++ VF   + KD ++WT +I   A   RY +AI  F+     G + D  +  +IL AC
Sbjct: 417 ECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEAC 476



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 5/189 (2%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S   L+Q+H+  I + L     +  ++I        + YAL+IF+    K++  +  ++ 
Sbjct: 481 SISLLKQVHSYAIRNGLL-DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVN 539

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
             AEN      ++ F  ML   ++P+ +    +  ++A LS L+ G+ +H  +++     
Sbjct: 540 CFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPV 599

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           +  V   L DMY   G    A KVFDE     K + V+LW  +IN     G+ ++A+ +F
Sbjct: 600 EGAVVSSLVDMYSGCGSMNYALKVFDEA----KCKDVVLWTAMINATGMHGHGKQAIYIF 655

Query: 223 GMMPKKNVA 231
             M +  V+
Sbjct: 656 KRMLETGVS 664


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 182/534 (34%), Positives = 292/534 (54%), Gaps = 76/534 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS- 232
           Y  +G+   A K+FDE P ++       WN +I+G    G+  +A++LF MM +   ++ 
Sbjct: 139 YANVGRIEQARKLFDEMPHRDN----FSWNAVISGYVSQGWYMEALDLFRMMQENESSNC 194

Query: 233 ---------------------------------------WVSLIDGFMRKGDLKKAGELF 253
                                                  W +L+D + + G L +A  +F
Sbjct: 195 NMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIF 254

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           +QM +K +VSWT MI+   ++G  ++  ++F  ++ +GVR N++T    L+ACA + A +
Sbjct: 255 DQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQ 314

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G  VH Y++   +       +ALV +Y+KCGN E A  VF +    DL++WT++I G A
Sbjct: 315 MGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYA 374

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            +G+ + A+Q+F+ ++ SGT+PD   F+ +L+AC ++G V + L +F S++  + +  + 
Sbjct: 375 QNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTA 434

Query: 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------------------------LLQ 465
            H+  V++LL+R G+  +      N   K                            L +
Sbjct: 435 DHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFE 494

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L+P++P++Y+ LSNIYA  G W +  +VR  M  R I K PG S+IE+   VH F  G  
Sbjct: 495 LEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDT 554

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQT 582
            H    +IH  L ++    +E+GY+  T +VLH+++EE KE+ +  HSEKLA+AFG+I T
Sbjct: 555 SHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIIST 614

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
           +PGT IK+ K L  C DCH+ MKY SKI QR+I++RD+ RFH F DG+CSC+DY
Sbjct: 615 SPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 136/258 (52%), Gaps = 6/258 (2%)

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH +   S   Y   +   L    ++LGK     +V   T   N    +++ N LI+  +
Sbjct: 55  LHRIPQPSPRLYSTLIAACLRHRKLELGK-----RVHAHTKASNFIPGIVISNRLIHMYA 109

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           K G L  A  LF  +P+K++ SW ++I G+   G +++A +LF++MP +   SW A+I+G
Sbjct: 110 KCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISG 169

Query: 271 FSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           +   G   +AL +F  M +      N FT+ SAL+A A + +L  G  +H Y+  +   L
Sbjct: 170 YVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLEL 229

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              + TAL+D+Y KCG++  A  +F +  +KD+++WT MI      GR ++    F+ +M
Sbjct: 230 DEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLM 289

Query: 390 YSGTEPDGTVFLAILTAC 407
            SG  P+   F  +L AC
Sbjct: 290 GSGVRPNEYTFAGVLNAC 307



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 106/452 (23%), Positives = 189/452 (41%), Gaps = 89/452 (19%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           NRL  A+     I    +PS  +  T I + +      +  +++HA     N      I+
Sbjct: 46  NRLKEAVDYLHRIP---QPSPRLYSTLIAACLRH-RKLELGKRVHAHTKASNFIPGIVIS 101

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA------------------ENS 108
            +LI   +   S+  A  +FD    K+L  +N +I G A                  +N 
Sbjct: 102 NRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNF 161

Query: 109 HFQSCISHFV----FMLRL----------SVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            + + IS +V    +M  L          S   N  T      + A++S L  G+ +H  
Sbjct: 162 SWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGY 221

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           +++SG+E D  V   L D+Y + G    A  +FD+  +K+    ++ W  +I+ C + G 
Sbjct: 222 LIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKD----IVSWTTMIHRCFEDGR 277

Query: 215 LRKAVELF------GMMPKKNVASWV---------------------------------S 235
            ++   LF      G+ P +   + V                                 +
Sbjct: 278 KKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPFSFAASA 337

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G+ + A  +F QMP   +VSWT++I G++QNG+ + AL  F  +L +G + +
Sbjct: 338 LVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLRSGTKPD 397

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA-----LVDMYAKCGNI-EA 349
           + T V  LSAC   G ++ G+   + +        G + TA     ++D+ A+ G   EA
Sbjct: 398 EITFVGVLSACTHAGLVDIGLEYFHSVKEK----HGLVHTADHYACVIDLLARSGRFKEA 453

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
            +++     + D   W +++ G  IHG  E A
Sbjct: 454 ENIIDNMPMKPDKFLWASLLGGCRIHGNIELA 485



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           ++AC +   LE G RVH +   ++F     I   L+ MYAKCG++  A ++F E  +KDL
Sbjct: 70  IAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDL 129

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
            +W  MI G A  GR EQA + F +M +        V    ++  WY      AL+ F  
Sbjct: 130 CSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYME----ALDLFRM 185

Query: 423 MR 424
           M+
Sbjct: 186 MQ 187


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  335 bits (859), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 209/703 (29%), Positives = 350/703 (49%), Gaps = 103/703 (14%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H+++    S    + R++  ++   NLF  +     L+S+ +  + +     +F     +
Sbjct: 53  HLLTAYAKSGRLARARRVFDEMPDPNLFTRN----ALLSALAHSRLVPDMERLFASMPER 108

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +   +N LI G +        +  +  +LR  SVRP R+T   +    ++LS  +LG  +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---------------- 195
           HC +++ G    AFV   L DMY ++G  R A +VF E   K                  
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228

Query: 196 -----------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
                          + W  ++ G ++ G   +A+++F  M  + V              
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288

Query: 232 ------------------SWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                             +W         +L+D + +   ++ A  +F +M  + ++SWT
Sbjct: 289 GALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI G+ QN  +E+A+  F +M   G++ +DFT+ S +S+CA + +LE G + H     +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                  +  ALV +Y KCG+IE A  +F E    D ++WTA++ G A  G+ ++ I  F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           +KM+ +G +PDG  F+ +L+AC  +G V+   ++FDSM+ D+ I P   H+T +++L SR
Sbjct: 469 EKMLVNGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSR 528

Query: 446 VGQDSQGYQ------NSQNSF----------------------TKLLQLKPKHPSSYVLL 477
            G+  +  +      +S ++F                        LL+  P++P+SYVLL
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
            +++AA+G+W +VA +R  M+ R +KK+PG S+I+    VH F A    H  +  I+ KL
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E + +   E+GY P    VLH++ + +K   +  HSEKLA+AFGLI       I+IVK L
Sbjct: 649 EWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNL 708

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +C DCH+  K+ SKI+ R+I++RD  RFH F DGTCSC D+W
Sbjct: 709 RVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 32/245 (13%)

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           ++    L N L+   +K G L +A  +F  MP  N+ +  +L+        +     LF 
Sbjct: 44  QAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFA 103

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
            MPE+  VS+ A+I GFS  G   +++ ++  +L +  VR    T+ + +   + +    
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--------------- 358
            G  VH  +    FG    +G+ LVDMYAK G I  A  VF E +               
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 359 ----------------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
                           ++D +TWT M+ GL  +G   +A+  F++M   G   D   F +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 403 ILTAC 407
           ILTAC
Sbjct: 284 ILTAC 288


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 216/677 (31%), Positives = 338/677 (49%), Gaps = 80/677 (11%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNL 94
           SLI ++ S     Q+HA  +   L   S  T+  +  A L    I  A  +FD  + +++
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDV 134

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
             +N ++ GL  N+     +  F  M+   V  + +T   V      L    L   +H  
Sbjct: 135 PAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALVMHVY 194

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            VK G++ + FV   L D+Y +LG    A  VF       +   ++ WN +I+GC + G 
Sbjct: 195 AVKHGLDKELFVCNALIDVYGKLGMLEEAQCVF----HGMECRDLVTWNSIISGCEQRGQ 250

Query: 215 LRKAVELF----GMMPKKNVASWVSLI-------DG---------FMRKG---------- 244
              A+++F    G     +V + VSL        DG          MR+G          
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310

Query: 245 ----------DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVR 293
                     +++ A  +F+ MP +  VSW  +I G+ QNG A +A+  +  M    G++
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK 370

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           A   T VS L A + +GAL+ G+R+H         +   +GT L+D+YAKCG +  A L+
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLL 430

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F +   +    W A+I GL +HG   +A+  F +M   G +PD   F+++L AC ++G V
Sbjct: 431 FEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLV 490

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------- 462
               +FFD M+  Y I P  KH+  + ++L R GQ  + +   QN   K           
Sbjct: 491 DQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLG 550

Query: 463 -----------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                            L +L P++   YVL+SN+YA  G+W  V  VR+L++R++++K 
Sbjct: 551 ACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKT 610

Query: 506 PGWSYIEVNGHVHRFEAGG----HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE- 560
           PGWS IEV   V+ F +G     H   +EI ++L  ++A  R  GY+    +VL ++++ 
Sbjct: 611 PGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDD 670

Query: 561 EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT 620
           EKE  L  HSE+LA+AFG+I T   T + I K L +CGDCH+  KY S+I++REI++RD+
Sbjct: 671 EKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITEREIIVRDS 730

Query: 621 -RFHYFKDGTCSCRDYW 636
            RFH+FKDG CSC D+W
Sbjct: 731 NRFHHFKDGHCSCGDFW 747


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 223/708 (31%), Positives = 351/708 (49%), Gaps = 112/708 (15%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS-----IDYALSIFDHFTP 91
           L+ S  + + ++QIHAQI+   +  S+ +  +L+       S     +DYALS+F H   
Sbjct: 18  LLASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPN 77

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
                 N L+R  +     ++ +S ++ + R     +R ++P + K+V+ LS L+LG  +
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 152 HCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           H L  K G  + D F++  L  MY   G+   A  +FD+   ++    V+ WN++I+G S
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRD----VVTWNIMIDGYS 193

Query: 211 KIGYLRKAVELF------GMMPKKNVASWV------------------------------ 234
           +  +    ++L+      G  P   +   V                              
Sbjct: 194 QNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSH 253

Query: 235 ---SLIDGFMRKGDLKKAGELFEQMP-------------------------------EKG 260
              SL++ +   G +  A E+++Q+P                               EK 
Sbjct: 254 IQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKD 313

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V W+AMI+G++++ +  +AL +F +M    +  +  T++S +SACA VGAL     +H 
Sbjct: 314 LVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHT 373

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y   N FG    I  AL+DMYAKCGN+  A  VF     K++++W++MI   A+HG  + 
Sbjct: 374 YADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADS 433

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI  F +M     EP+G  F+ +L AC ++G V+    FF SM  ++ I P  +H+  +V
Sbjct: 434 AIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMV 493

Query: 441 NLLSRV----------------------GQDSQGYQN------SQNSFTKLLQLKPKHPS 472
           +L  R                       G      QN       + + T+LL+L+P H  
Sbjct: 494 DLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDG 553

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKE 530
           + V+LSNIYA E RW DV  VR LM+ + + K+   S IEVN  VH F      HK + E
Sbjct: 554 ALVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDE 613

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIK 589
           I+ KL+ +++  +  GY P T  +L +++EE+++ +   HSEKLAL +GLI     + I+
Sbjct: 614 IYKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIR 673

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L IC DCHS MK  SK+ + EIV+RD TRFH+F  G CSCRDYW
Sbjct: 674 IVKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/377 (20%), Positives = 153/377 (40%), Gaps = 74/377 (19%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           +T ++++  +  +    R+++ Q+   ++     ++T ++S  +    +  A  IFD   
Sbjct: 255 QTSLVNMYANCGAMHLAREVYDQLPSKHMV----VSTAMLSGYAKLGMVQDARFIFDRMV 310

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            K+L  ++ +I G AE+      +  F  M R  + P+++T   V  + A++  L   + 
Sbjct: 311 EKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKW 370

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H    K+G                  G+T                  + + N LI+  +
Sbjct: 371 IHTYADKNG-----------------FGRT------------------LPINNALIDMYA 395

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           K G L KA E+F  MP+KNV SW S+I+ F   GD                         
Sbjct: 396 KCGNLVKAREVFENMPRKNVISWSSMINAFAMHGD------------------------- 430

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR-VHNYISCNDFGL 329
                 A+ A+A+F +M +  +  N  T +  L AC+  G +E G +   + I+ +    
Sbjct: 431 ------ADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISP 484

Query: 330 KGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           +      +VD+Y +  ++ +A  L+       +++ W +++     HG  E  +  F   
Sbjct: 485 QREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIE--LGEFAAT 542

Query: 389 MYSGTEPDGTVFLAILT 405
                EPD    L +L+
Sbjct: 543 RLLELEPDHDGALVVLS 559


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 170/434 (39%), Positives = 263/434 (60%), Gaps = 32/434 (7%)

Query: 235  SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            +L+D + +  +++ A  LF++M E+ +V+WT MI G+++ G A ++L +F +M + GV  
Sbjct: 876  ALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 935

Query: 295  NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
            +   +V+ + ACAK+GA+     + +YI    F L   +GTA++DM+AKCG +E+A  +F
Sbjct: 936  DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF 995

Query: 355  GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               +EK++++W+AMI     HG+  +A+  F  M+ SG  P+    +++L AC ++G V+
Sbjct: 996  DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE 1055

Query: 415  LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------- 455
              L FF  M  DY +   VKH+T VV+LL R G+  +  +                    
Sbjct: 1056 EGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGA 1115

Query: 456  ---------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                     ++ + T LL+L+P++P  Y+LLSNIYA  GRW+DVA++R LM +R +KK P
Sbjct: 1116 CRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIP 1175

Query: 507  GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
            GW++IEV+   H+F  G   H  +KEI+  L+ +       GY+P T +VLH++ EE K 
Sbjct: 1176 GWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKI 1235

Query: 564  EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
              L  HSEKLA+AFGLI T   T I+I+K L +CGDCH+  K  S I+ R I++RD  RF
Sbjct: 1236 GILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRF 1295

Query: 623  HYFKDGTCSCRDYW 636
            H+FK+G CSC DYW
Sbjct: 1296 HHFKEGACSCGDYW 1309



 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/391 (38%), Positives = 233/391 (59%), Gaps = 31/391 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D +++  +++ A  LF++M E+ +V+WT MI G+++ G+A ++L +F +M + GV  
Sbjct: 200 ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 259

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +   +V+ + ACAK+GA+     + +YI    F L   +GTA++DMYAKCG +E+A  +F
Sbjct: 260 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 319

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
              +EK++++W+AMI     HG+  +A+  F  M+ SG  PD     ++L AC ++G V+
Sbjct: 320 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVE 379

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-------------------- 454
             L FF SM  DY +   VKH+T VV+LL R G+  +  +                    
Sbjct: 380 EGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGA 439

Query: 455 --------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                    ++ + T LL+L+ ++P  YVLLSNIYA  GRW+DVA++R LM +R +KK P
Sbjct: 440 CRTHKDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTP 499

Query: 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           GW++IEV+   H+F  G   H  +KEI+  L+ +       GY+P T +VLH++ EE K 
Sbjct: 500 GWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKI 559

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
             L  HSEKLA+AFGLI T   T I+I+K L
Sbjct: 560 GILYTHSEKLAIAFGLIATPEHTPIRIIKNL 590



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 194/385 (50%), Gaps = 48/385 (12%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           +I +L++  N T Q+RQ+HAQ  +H +  +  +  +LI   S ++++D A  +FD    +
Sbjct: 65  YISALVNCRNLT-QVRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVR 123

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +   ++V++ G A+   + +C   F  ++R   RP+  T PFV ++   L  L +GR +H
Sbjct: 124 DSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIH 183

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
            ++ K G++ D FV   L DMYV+  +   A  +FD+  E++    ++ W V+I G ++ 
Sbjct: 184 HIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERD----LVTWTVMIGGYAEC 239

Query: 213 GYLRKAVELF------GMMPKK---------------------------------NVASW 233
           G   +++ LF      G++P K                                 +V   
Sbjct: 240 GKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILG 299

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            ++ID + + G ++ A E+F++M EK V+SW+AMI  +  +G+  KAL +F  ML +G+ 
Sbjct: 300 TAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGML 359

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAA 350
            +  T+ S L AC+  G +E G+R  + +   D+ ++  +   T +VD+  + G + EA 
Sbjct: 360 PDKITLASLLYACSHAGLVEEGLRFFSSMW-EDYSVRTDVKHYTCVVDLLGRAGRLDEAL 418

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIH 375
            L+   T EKD   W A +     H
Sbjct: 419 KLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/368 (27%), Positives = 186/368 (50%), Gaps = 39/368 (10%)

Query: 46   QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
            Q+RQ+H Q  +H +  +  +  +L+   S ++++D A  +FD    ++   ++V++ G A
Sbjct: 753  QVRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA 812

Query: 106  ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            +   + +C   F  ++R   RP+  T PFV ++   L  L +GR +H ++ K G++ D F
Sbjct: 813  KVGDYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHF 872

Query: 166  VRVHLADMYVQLGKTRGAFKVFDETPEK----------------NKSESVLLWN------ 203
            V   L DMY +  +   A  +FD+  E+                N +ES++L++      
Sbjct: 873  VCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 932

Query: 204  ---------VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAG 250
                      ++  C+K+G + KA  +   + +K    +V    ++ID   + G ++ A 
Sbjct: 933  VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 992

Query: 251  ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            E+F++M EK V+SW+AMI  +  +G+  KAL +F  ML +G+  N  T+VS L AC+  G
Sbjct: 993  EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAG 1052

Query: 311  ALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTA 367
             +E G+R  + +   D+ ++  +   T +VD+  + G + EA  L+   T EKD   W A
Sbjct: 1053 LVEEGLRFFSXMW-EDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGA 1111

Query: 368  MIWGLAIH 375
             +     H
Sbjct: 1112 FLGACRTH 1119



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           L  A  LF+ M  +  VSW+ M+ GF++ G+       F +++  G R +++T+   + A
Sbjct: 110 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA 169

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C  +  L+ G  +H+ +      L   +  ALVDMY KC  IE A  +F + +E+DL+TW
Sbjct: 170 CRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTW 229

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           T MI G A  G+  +++  F+KM   G  PD    + ++ AC
Sbjct: 230 TVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFAC 271



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 65/225 (28%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           GM+    VA+ +     + R   L  A  LF+ M  +  VSW+ M+ GF++ G+      
Sbjct: 765 GMLQNLIVANKLVXFYSYYRA--LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFG 822

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            F +++  G R +++T+   + AC  +  L+ G  +H+ +      L   +  ALVDMY 
Sbjct: 823 TFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYG 882

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KC  IE A  +F +  E+DL+TWT MI G A  G   +++  F KM   G  PD    + 
Sbjct: 883 KCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVT 942

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           ++ AC   G +  A    D ++   F +  V   T ++++ ++ G
Sbjct: 943 VVFACAKLGAMHKARTIDDYIQRKKF-QLDVILGTAMIDMHAKCG 986



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 115/278 (41%), Gaps = 14/278 (5%)

Query: 19   IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
            I+   +P +N T   +I       + +  R IH  +    L     +   L+      + 
Sbjct: 828  IRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 886

Query: 79   IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
            I+ A  +FD    ++L  + V+I G AE  +    +  F  M    V P+++    V  +
Sbjct: 887  IEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 946

Query: 139  VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             A L  +   R +   I +   + D  +   + DM+ + G    A ++FD   EKN    
Sbjct: 947  CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKN---- 1002

Query: 199  VLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFE 254
            V+ W+ +I      G  RKA++LF MM +     N  + VSL+      G +++    F 
Sbjct: 1003 VISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFS 1062

Query: 255  QMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
             M E       V  +T +++   + G  ++AL +   M
Sbjct: 1063 XMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSM 1100



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 114/280 (40%), Gaps = 18/280 (6%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I+   +P +N T   +I       + +  R IH  +    L     +   L+      + 
Sbjct: 152 IRCGARP-DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCRE 210

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A  +FD    ++L  + V+I G AE       +  F  M    V P+++    V  +
Sbjct: 211 IEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFA 270

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L  +   R +   I +   + D  +   + DMY + G    A ++FD   EKN    
Sbjct: 271 CAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN---- 326

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           V+ W+ +I      G  RKA++LF      GM+P K   +  SL+      G +++    
Sbjct: 327 VISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDK--ITLASLLYACSHAGLVEEGLRF 384

Query: 253 FEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
           F  M E       V  +T +++   + G  ++AL +   M
Sbjct: 385 FSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSM 424


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 216/683 (31%), Positives = 337/683 (49%), Gaps = 77/683 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S N T+T ++SL   + +     Q++AQI+++ L  S      +  +     S+  A   
Sbjct: 11  SRNPTKT-LLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKA 69

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+H T +NLH +N ++   ++N  F   +  F  ML+     +     F  K+   LSL 
Sbjct: 70  FNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF 129

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
              +  H L +K  +E D +V   L ++Y +LG    A KVF+E P KN     ++W V+
Sbjct: 130 QGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS----VIWGVM 185

Query: 206 ING-----------------------------------CSKIGYLRKAVELFGMMPKKNV 230
           I G                                   C  +   ++     G+  KKN 
Sbjct: 186 IKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNF 245

Query: 231 AS-----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    SL+D +M+ G L  A +LFE++  + VV W+A+I GF++NG A ++++MF 
Sbjct: 246 IDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFR 305

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QML   V  N  T  S + AC+ +G+L+ G  VH Y+  N   L     T+ +DMYAKCG
Sbjct: 306 QMLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCG 365

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            I  A  VF +  EK++ +W+ MI G  +HG   +A+  F +M      P+   F+++L+
Sbjct: 366 CIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLS 425

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT---- 461
           AC +SG+++   + F SM  DY I P  +H+  +V+LL R G+  +      N  T    
Sbjct: 426 ACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGA 485

Query: 462 ------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                                   KLL L+      YV+LSNIYA  G W+ V + R  M
Sbjct: 486 SAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKM 545

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAK--EIHSKLEDIMAGAREQGYMPGTEWVL 555
             + I K  G++ IE+   ++ F +      K  +I S    +    RE GY+P   +VL
Sbjct: 546 CEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVL 605

Query: 556 HNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H++ +E K+E L  HSEKLA+ FGL+ +  G  I+I K + +CGDCH+  K+ S I++R+
Sbjct: 606 HDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRK 665

Query: 615 IVLRDT-RFHYFKDGTCSCRDYW 636
           I++RD  RFH+ +DG CSC DYW
Sbjct: 666 IIMRDVKRFHHVQDGVCSCGDYW 688


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 197/524 (37%), Positives = 288/524 (54%), Gaps = 66/524 (12%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           + +GR +H L VK GVE    ++  L  +Y   G+   A ++FD+  E       LL   
Sbjct: 286 VEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGE-------LL--- 335

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                   ++ SW S+I G++R G ++ A  LF  MPEK VVSW
Sbjct: 336 ------------------------DLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSW 371

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           +AMI+G++Q+    +ALA+F +M   GVR ++  +VSA+SAC  +  L+ G  +H YIS 
Sbjct: 372 SAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLGKWIHAYISR 431

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           N   +   + T L+DMY KCG +E A  VF   +EK + TW A+I GLA++G  EQ++  
Sbjct: 432 NKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNM 491

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  +GT P+   F+ +L AC + G V    ++F+SM  ++ IE ++KH+  +V+LL 
Sbjct: 492 FADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLG 551

Query: 445 RVG----------------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
           R G                            +  +  +  +    KL+QL+P H   +VL
Sbjct: 552 RAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVL 611

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           LSNIYA++G W +V  +R +M +  + K PG S IE NG VH F AG   H    +I   
Sbjct: 612 LSNIYASKGNWGNVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHM 671

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           L+ + A  + +GY+P T  V  +I +EEKE AL  HSEKLA+AFGLI  +P T I++ K 
Sbjct: 672 LDVVAAKLKIEGYVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKN 731

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L IC DCH+++K  SK   R+IV+RD  RFH+FK G CSC D+W
Sbjct: 732 LRICNDCHTVVKLISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 127/420 (30%), Positives = 215/420 (51%), Gaps = 44/420 (10%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPK 92
           SL+ S    +  +Q+ +Q IL  L       ++LI+ +S   ++    Y+L IF+H    
Sbjct: 8   SLLQSCKCPRHFKQLLSQTILTGLITDPYAASRLINFSSHSTTLVPFHYSLRIFNHLRNP 67

Query: 93  NLHIFNVLIRG--LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
           N   +N ++R     +NS  Q+ + H+   L    +P+  TYP + +  A+      GR 
Sbjct: 68  NTFTWNTIMRAHLYLQNSPHQALL-HYKLFLASHAKPDSYTYPILLQCCAARVSEFEGRQ 126

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH   V SG + D +VR  L ++Y   G    A +VF+E+P  +    ++ WN L+ G  
Sbjct: 127 LHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLD----LVSWNTLLAGYV 182

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMI 268
           + G + +A  +F  MP++N  +  S+I  F RKG ++KA  +F  +   E+ +VSW+AM+
Sbjct: 183 QAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMV 242

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY---ISCN 325
           + + QN   E+AL +F +M  +GV  ++  VVSALSAC++V  +E G  VH     +   
Sbjct: 243 SCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSALSACSRVLNVEMGRWVHGLAVKVGVE 302

Query: 326 DF-GLKGAI-------------------GTALVDM---------YAKCGNIEAASLVFGE 356
           D+  LK A+                   G  L+D+         Y +CG+I+ A ++F  
Sbjct: 303 DYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYS 362

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             EKD+++W+AMI G A H  + +A+  F++M   G  PD T  ++ ++AC +   + L 
Sbjct: 363 MPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLATLDLG 422



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 97/242 (40%), Gaps = 45/242 (18%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           SI  A  +F     K++  ++ +I G A++  F   ++ F  M    VRP+         
Sbjct: 352 SIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAIS 411

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +   L+ L LG+ +H  I ++ ++ +  +   L DMY++ G    A +VF    EK  S 
Sbjct: 412 ACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAMEEKGVST 471

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------------------- 228
               WN +I G +  G + +++ +F  M K                              
Sbjct: 472 ----WNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVNDGRHYF 527

Query: 229 -----------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE 276
                      N+  +  ++D   R G LK+A EL + MP    V +W A++    ++ +
Sbjct: 528 NSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRD 587

Query: 277 AE 278
            E
Sbjct: 588 NE 589



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 15/261 (5%)

Query: 31  ETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           ET ++S I +      L   + IHA I  + L  +  ++T LI        ++ AL +F 
Sbjct: 403 ETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFY 462

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               K +  +N +I GLA N   +  ++ F  M +    PN +T+  V  +   + L++ 
Sbjct: 463 AMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHMGLVND 522

Query: 148 GRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           GR   + +I +  +E +      + D+  + G  + A ++ D  P    +  V  W  L+
Sbjct: 523 GRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMP---MAPDVATWGALL 579

Query: 207 NGCSK-----IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
             C K     +G  R   +L  + P  +    V L + +  KG+     E+   M + GV
Sbjct: 580 GACRKHRDNEMGE-RLGRKLIQLQPDHD-GFHVLLSNIYASKGNWGNVLEIRGIMAQHGV 637

Query: 262 VSWTAMINGFSQNGEAEKALA 282
           V  T   +    NG   + LA
Sbjct: 638 VK-TPGCSMIEANGTVHEFLA 657


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  335 bits (858), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 209/703 (29%), Positives = 350/703 (49%), Gaps = 103/703 (14%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H+++    S    + R++  ++   NLF  +     L+S+ +  + +     +F     +
Sbjct: 53  HLLTAYAKSGRLARARRVFDEMPDPNLFTRN----ALLSALAHSRLVPDMERLFASMPER 108

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +   +N LI G +        +  +  +LR  SVRP R+T   +    ++LS  +LG  +
Sbjct: 109 DAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSV 168

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---------------- 195
           HC +++ G    AFV   L DMY ++G  R A +VF E   K                  
Sbjct: 169 HCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMI 228

Query: 196 -----------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
                          + W  ++ G ++ G   +A+++F  M  + V              
Sbjct: 229 EDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTAC 288

Query: 232 ------------------SWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                             +W         +L+D + +   ++ A  +F +M  + ++SWT
Sbjct: 289 GALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWT 348

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI G+ QN  +E+A+  F +M   G++ +DFT+ S +S+CA + +LE G + H     +
Sbjct: 349 AMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVS 408

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                  +  ALV +Y KCG+IE A  +F E    D ++WTA++ G A  G+ ++ I  F
Sbjct: 409 GLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLF 468

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           +KM+ +G +PDG  F+ +L+AC  +G V+   ++FDSM+ D+ I P   H+T +++L SR
Sbjct: 469 EKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSR 528

Query: 446 VGQDSQGYQ------NSQNSF----------------------TKLLQLKPKHPSSYVLL 477
            G+  +  +      +S ++F                        LL+  P++P+SYVLL
Sbjct: 529 SGRFKEAEEFIKQMPHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLL 588

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
            +++AA+G+W +VA +R  M+ R +KK+PG S+I+    VH F A    H  +  I+ KL
Sbjct: 589 CSMHAAKGQWTEVAHLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKL 648

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E + +   E+GY P    VLH++ + +K   +  HSEKLA+AFGLI       I+IVK L
Sbjct: 649 EWLNSKMAEEGYKPDVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNL 708

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +C DCH+  K+ SKI+ R+I++RD  RFH F DGTCSC D+W
Sbjct: 709 RVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 107/245 (43%), Gaps = 32/245 (13%)

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           ++    L N L+   +K G L +A  +F  MP  N+ +  +L+        +     LF 
Sbjct: 44  QAPPTFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFA 103

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
            MPE+  VS+ A+I GFS  G   +++ ++  +L +  VR    T+ + +   + +    
Sbjct: 104 SMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRA 163

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--------------- 358
            G  VH  +    FG    +G+ LVDMYAK G I  A  VF E +               
Sbjct: 164 LGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLL 223

Query: 359 ----------------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
                           ++D +TWT M+ GL  +G   +A+  F++M   G   D   F +
Sbjct: 224 RCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGS 283

Query: 403 ILTAC 407
           ILTAC
Sbjct: 284 ILTAC 288


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 193/588 (32%), Positives = 316/588 (53%), Gaps = 41/588 (6%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    ++   +N LI   A N H    +   V M     +P + ++    ++ + L  
Sbjct: 111 VFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLD 170

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G+ +H  IV + +  + FVR  + DMY + G    A  +FD   +KN    V+ WN+
Sbjct: 171 LRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKN----VVSWNL 226

Query: 205 LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +I+G  K+G   + + LF  M     K ++ +  ++++ + R G +  A  LF ++P+K 
Sbjct: 227 MISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKD 286

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            + WT MI G++QNG  E A  +F  ML   V+ + +T+ S +S+CAK+ +L  G  VH 
Sbjct: 287 EICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHG 346

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            +          + +ALVDMY KCG    A ++F     ++++TW AMI G A +G+  +
Sbjct: 347 KVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLE 406

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+  +++M     +PD   F+ +L+AC  +  VK    +FDS+  ++ I P++ H+  ++
Sbjct: 407 ALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS-EHGIAPTLDHYACMI 465

Query: 441 NLLSRVGQDSQG---------------------------YQNSQNSFTKLLQLKPKHPSS 473
            LL R G   +                             +N++ + + L +L P++   
Sbjct: 466 TLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKNAELAASHLFELDPRNAGP 525

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEI 531
           Y++LSN+YAA GRWKDVA VR+LM+ ++ KK   +S++EV   VHRF  E   H    +I
Sbjct: 526 YIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKI 585

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTT-IK 589
           + +L  +++  ++ GY P T  VLHN+ +EEK  ++  HSEKLALAF LI+   G   I+
Sbjct: 586 YGELNRLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIR 645

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I+K + +C DCH  MK+AS    R I++RD+ RFH+F  G CSC D W
Sbjct: 646 IIKNIRVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 119/218 (54%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N L++  +K G L  A  +F  M K++V SW +L+  + + G ++    +F+QMP +  V
Sbjct: 62  NQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRDSV 121

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           S+  +I  F+ NG + KAL +  +M + G +   ++ V+AL AC+++  L  G ++H  I
Sbjct: 122 SYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRI 181

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              D G    +  A+ DMYAKCG+I+ A L+F    +K++++W  MI G    G   + I
Sbjct: 182 VVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECI 241

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
             F +M  SG +PD      +L A +  G+V  A N F
Sbjct: 242 HLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLF 279



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 151/331 (45%), Gaps = 17/331 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIH +I++ +L  ++ +   +    +    ID A  +FD    KN+  +N++I G  + 
Sbjct: 175 KQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKM 234

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            +   CI  F  M    ++P+ +T   V  +      +   R L   + K     D    
Sbjct: 235 GNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKK----DEICW 290

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA------VEL 221
             +   Y Q G+   A+ +F +   +N        + +++ C+K+  L         V +
Sbjct: 291 TTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVV 350

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
            G+     V+S  +L+D + + G    A  +FE MP + V++W AMI G++QNG+  +AL
Sbjct: 351 MGIDNSMLVSS--ALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEAL 408

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
            ++ +M     + ++ T V  LSAC     ++ G +  + IS  + G+   +     ++ 
Sbjct: 409 TLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS--EHGIAPTLDHYACMIT 466

Query: 340 MYAKCGNIE-AASLVFGETKEKDLLTWTAMI 369
           +  + G+++ A  L+ G   E +   W+ ++
Sbjct: 467 LLGRSGSVDKAVDLIQGMPHEPNYRIWSTLL 497



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 137/300 (45%), Gaps = 17/300 (5%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A ++F     K+   +  +I G A+N   +     F  MLR +V+P+  T   +  S
Sbjct: 272 VDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSS 331

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L+ L  G+ +H  +V  G++    V   L DMY + G T  A  +F+  P +N    
Sbjct: 332 CAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRN---- 387

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
           V+ WN +I G ++ G + +A+ L+  M ++N      ++V ++   +    +K+  + F+
Sbjct: 388 VITWNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFD 447

Query: 255 QMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            + E G+      +  MI    ++G  +KA+ +   M       N     + LS CAK G
Sbjct: 448 SISEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPH---EPNYRIWSTLLSVCAK-G 503

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            L+      +++   D    G     L ++YA CG  +  ++V    KEK+   + A  W
Sbjct: 504 DLKNAELAASHLFELDPRNAGPY-IMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSW 562



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 8/151 (5%)

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           CA+        R+ +++  N F  K + I   L+ +YAK G +  A  VF    ++D+ +
Sbjct: 32  CARANDFIQAKRLQSHMELNLFQPKDSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYS 91

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQVKLALNFFDSM 423
           W  ++   A  G  E     F +M Y  +    T     L AC+ S G    AL     M
Sbjct: 92  WNTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNT-----LIACFASNGHSGKALKVLVRM 146

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           + D F +P+   H   +   S++     G Q
Sbjct: 147 QEDGF-QPTQYSHVNALQACSQLLDLRHGKQ 176


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 211/661 (31%), Positives = 332/661 (50%), Gaps = 104/661 (15%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAE 106
           +QIHA  I     +++ + T L+   +  K I  A  +F+    K  H+ +  ++ G ++
Sbjct: 158 KQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQ 217

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           N      I  F  M    +  N+ T+P +  +  S+S    G  +H  IV+SG   + FV
Sbjct: 218 NGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFV 277

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L DMY + G    A ++  ET E +   S   WN +I GC + G   +A+ LF +M 
Sbjct: 278 GSALVDMYSKCGDLSNARRML-ETMEVDDPVS---WNSMIVGCVRQGLGEEALSLFRIMH 333

Query: 227 KK-------------NVASWV--------------------------SLIDGFMRKGDLK 247
            +             N  S+V                          +L+D + ++G   
Sbjct: 334 LRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFD 393

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A ++FE+M +K V+SWT+++ G   NG  E+AL +F +M   G+  +   + + LSACA
Sbjct: 394 YAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACA 453

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           ++  LE G +VH     +  G   ++  +LV MYAKCG IE A+ VF   + +D++TWTA
Sbjct: 454 ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTA 513

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           +I G A +GR                               ++G V+   ++F SM   Y
Sbjct: 514 LIVGYAQNGRGRD----------------------------HAGLVEHGRSYFQSMEEVY 545

Query: 428 FIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQN-------------SQNS 459
            I+P  +H+  +++LL R G+               D+  ++               + +
Sbjct: 546 GIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERA 605

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
              L +L+PK+   YVLLSN+Y+A G+W++ A+ R LM+ R + K+PG S+IE++  VHR
Sbjct: 606 ANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHR 665

Query: 520 F--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALA 576
           F  E   H    EI+SK+++IM   +E GY+P   + LH++ EE KE  L  HSEKLA+A
Sbjct: 666 FMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVA 725

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDY 635
           FGL+   PG  I+I K L ICGDCH+ MKY S +  R ++LRD+  FH+F++G CSC DY
Sbjct: 726 FGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDY 785

Query: 636 W 636
           W
Sbjct: 786 W 786



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 149/321 (46%), Gaps = 42/321 (13%)

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           RPN+ T+  V +  +   LL  G+ +H   +K+  + +AFV   L DMY +      A  
Sbjct: 135 RPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEY 194

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----------------- 228
           +F+  P+K      +LW  ++ G S+ G   KA+E F  M  +                 
Sbjct: 195 LFELAPDKRNH---VLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACG 251

Query: 229 ----------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                 NV    +L+D + + GDL  A  + E M     VSW +
Sbjct: 252 SISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNS 311

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G  + G  E+AL++F  M    ++ ++FT  S L+  + V  +   + VH+ I    
Sbjct: 312 MIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTG 371

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F     +  ALVDMYAK G  + A  VF +  +KD+++WT+++ G   +G YE+A++ F 
Sbjct: 372 FEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFC 431

Query: 387 KMMYSGTEPDGTVFLAILTAC 407
           +M   G  PD  V  A+L+AC
Sbjct: 432 EMRIMGIHPDQIVIAAVLSAC 452



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 114/206 (55%), Gaps = 1/206 (0%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N +++  SK G +  A +LF +MP ++  SW ++I  +   G L +A +LF + P +  +
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W+++I+G+ + G   +AL +F++M   G R N FT  S L  C+    LE G ++H + 
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQA 381
               F     + T LVDMYAKC  I  A  +F    +K + + WTAM+ G + +G   +A
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           I+ F+ M   G E +   F +ILTAC
Sbjct: 225 IECFRDMRGEGIECNQFTFPSILTAC 250



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 125/273 (45%), Gaps = 44/273 (16%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKN 229
           Y   G+   A K+F ETP +    S + W+ LI+G  + G   +A+ELF  M     + N
Sbjct: 82  YANSGRLNEARKLFYETPIR----SCITWSSLISGYCRYGCDVEALELFWEMQYEGERPN 137

Query: 230 VASWVS-----------------------------------LIDGFMRKGDLKKAGELFE 254
             +W S                                   L+D + +   + +A  LFE
Sbjct: 138 QFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFE 197

Query: 255 QMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
             P+K   V WTAM+ G+SQNG+  KA+  F  M   G+  N FT  S L+AC  + A  
Sbjct: 198 LAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISACG 257

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G +VH  I  + FG    +G+ALVDMY+KCG++  A  +    +  D ++W +MI G  
Sbjct: 258 FGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCV 317

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
             G  E+A+  F+ M     + D   + ++L  
Sbjct: 318 RQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNC 350



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 110/271 (40%), Gaps = 21/271 (7%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H   +  T   +++        +    +H+ I+     A   +   L+   +     DYA
Sbjct: 336 HMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYA 395

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             +F+  T K++  +  L+ G   N  ++  +  F  M  + + P+++    V  + A L
Sbjct: 396 FDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAEL 455

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           ++L  G+ +H   +KSG+     V   L  MY + G    A KVFD      + + V+ W
Sbjct: 456 TVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSM----EIQDVITW 511

Query: 203 NVLINGCSKIG--------------YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
             LI G ++ G              Y +   E++G+ P      +  +ID   R G L +
Sbjct: 512 TALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGPE--HYACMIDLLGRSGKLME 569

Query: 249 AGELFEQMP-EKGVVSWTAMINGFSQNGEAE 278
           A EL  QM  +     W A++     +G  E
Sbjct: 570 AKELLNQMAVQPDATVWKALLAACRVHGNVE 600


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 220/688 (31%), Positives = 350/688 (50%), Gaps = 76/688 (11%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K+S  P N  T    +     S+  KQ   IHA ++  + + +  +   LI+  +    +
Sbjct: 275 KASLAP-NTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKM 333

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
             A +IF +    +   +N ++ G  +N  +   +  +  M     +P+ +    +  + 
Sbjct: 334 GEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAAS 393

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A       G  +H   +K+G++ D  V   L DMY +    +    +FD+ P+K+    V
Sbjct: 394 ARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKD----V 449

Query: 200 LLWNVLINGCSKIGYLRKAVELFG-----------MMPK---------------KNVASW 233
           + W  +I G ++ G   +A+ELF            MM                 K + S+
Sbjct: 450 VSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSY 509

Query: 234 V------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           +             ++D +   G++  A  +FE +  K VVSWT+MI+ +  NG A +AL
Sbjct: 510 IIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 569

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            +F  M + GV  +  ++VS LSA A + AL+ G  +H ++    F L+G++ + LVDMY
Sbjct: 570 ELFHLMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMY 629

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           A+CG +E +  VF   + KDL+ WT+MI    +HG    AI  F++M      PD   F+
Sbjct: 630 ARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFV 689

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--- 458
           A+L AC +SG +     F +SM+++Y +EP  +H+  +V+LL R     + YQ  +    
Sbjct: 690 AVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEV 749

Query: 459 -------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                                    +  KLL++ P++P +YVL+SN+Y+AE RWKDV  V
Sbjct: 750 EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXV 809

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAG-AREQGYMPG 550
           R  M+   +KK+PG S+IEV   VH F A    H  + EI+SKL  I    A+E GY+  
Sbjct: 810 RMRMKASGLKKNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQ 869

Query: 551 TEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
           T++VLHN K EEK + L  HSE+LA+A+G++ T  G +++I K L +CGDCH+  K  SK
Sbjct: 870 TKFVLHNAKEEEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISK 929

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             +RE+V+RD  RFH+FK G CSC D W
Sbjct: 930 FFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 206/442 (46%), Gaps = 46/442 (10%)

Query: 9   LTTAIAPTTNIKSSHKPSN-NITETH--IISLIHSSNSTKQLRQIHAQIILHN-LFASSR 64
           +  A    T++ ++  PS  ++ E +  ++ L  S  +  + +Q+HA +I  N LF S  
Sbjct: 56  VNEAFQSLTDLFANQSPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVF 115

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           ++T+L+        +  A  +FD    K +  +N +I     N      +  +  M    
Sbjct: 116 LSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSG 175

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  +  T+P + K+   L     G  +H L +K G     FV   +  MY +     GA 
Sbjct: 176 IPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGAR 235

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------------- 231
           ++FD  PEK   E V+ WN +I+  S  G   +A+ LFG M K ++A             
Sbjct: 236 QLFDRMPEK---EDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 292

Query: 232 ---SWV-----------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
              S++                       +LI  + R G + +A  +F  M +   +SW 
Sbjct: 293 EDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWN 352

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           +M++GF QNG   +AL  + +M DAG + +   V+S ++A A+ G    G+++H Y   N
Sbjct: 353 SMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN 412

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                  +G +LVDMYAK  +++    +F +  +KD+++WT +I G A +G + +A++ F
Sbjct: 413 GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELF 472

Query: 386 KKMMYSGTEPDGTVFLAILTAC 407
           +++   G + D  +  +IL AC
Sbjct: 473 REVQLEGIDLDVMMISSILLAC 494



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 45/323 (13%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA-FVRVHLADMYVQLGKTRGAFKVFDE 189
            Y  V +   S   LS G+ +H  ++ S   +++ F+   L  MY + G    A K+FD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 190 TPEKNKSESVLLWNVLI-----NG------------------------------CSKIGY 214
            P K    ++  WN +I     NG                              C  +  
Sbjct: 140 MPHK----TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD 195

Query: 215 LRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMIN 269
            R   E+ G+  K+   S V    S++  + +  DL  A +LF++MPEK  VVSW +MI+
Sbjct: 196 RRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMIS 255

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            +S NG++ +AL +F +M  A +  N +T V+AL AC     ++ G+ +H  +  + + +
Sbjct: 256 AYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYI 315

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +  AL+ MYA+ G +  A+ +F    + D ++W +M+ G   +G Y +A+Q++ +M 
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 375

Query: 390 YSGTEPDGTVFLAILTACWYSGQ 412
            +G +PD    ++I+ A   SG 
Sbjct: 376 DAGQKPDLVAVISIIAASARSGN 398



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 1/180 (0%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G L  A +LF+ MP K + +W AMI  +  NGE   +L ++ +M  +G+  +
Sbjct: 120 LVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLD 179

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T    L AC  +     G  VH       +     +  ++V MY KC ++  A  +F 
Sbjct: 180 ACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFD 239

Query: 356 ETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
              EK D+++W +MI   + +G+  +A++ F +M  +   P+   F+A L AC  S  +K
Sbjct: 240 RMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIK 299


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 204/657 (31%), Positives = 320/657 (48%), Gaps = 114/657 (17%)

Query: 87  DHFTPKNL----HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           +H  PK+L    + F   +  L +    +  +     + R   RP+   Y  +  +    
Sbjct: 44  NHLNPKDLVSEDNKFEEAVDVLCQQKRVKEAVE---LLHRTDHRPSARVYSTLIAACVRH 100

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ-------------------------- 176
             L LGR +H     S      F+   L DMY +                          
Sbjct: 101 RALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMI 160

Query: 177 -----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
                LG+   A K+FDE P+++       WN  I+G       R+A+ELF +M +   +
Sbjct: 161 VGYAKLGRLEQARKLFDEMPQRDN----FSWNAAISGYVTHNQPREALELFRVMQRHERS 216

Query: 232 S----------------------------------------WVSLIDGFMRKGDLKKAGE 251
           S                                        W +L+D + + G L +A  
Sbjct: 217 SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARG 276

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F+QM ++ VVSWT MI+   ++G  E+   +F  ++ +GVR N++T    L+ACA   A
Sbjct: 277 IFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAA 336

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
              G  VH Y+    +       +ALV MY+KCGN   A  VF E  + DL++WT++I G
Sbjct: 337 EHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVG 396

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            A +G+ ++A+ +F+ ++ SGT+PD   ++ +L+AC ++G V   L +F S++  + +  
Sbjct: 397 YAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMH 456

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----------------------------L 463
           +  H+  V++LL+R G+  +      N   K                            L
Sbjct: 457 TADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKAL 516

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
            +++P++P++Y+ L+NIYA  G W +VA VR  M    I K PG S+IE+   VH F  G
Sbjct: 517 YEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVG 576

Query: 524 --GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLI 580
              H    +IH  L ++    +E+GY+P T +VLH+++EE KE+ L  HSEKLA+ FG+I
Sbjct: 577 DTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVEEEQKEQNLVYHSEKLAVVFGII 636

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            T PGT IK+ K L  C DCH+ +KY SKI QR+I +RD+ RFH F+DG+CSC+DYW
Sbjct: 637 STPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 124/279 (44%), Gaps = 16/279 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IH  +I   L     + + L+       S+D A  IFD    +++  +  +I    E+
Sbjct: 240 KEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFED 299

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +     F  +++  VRPN  T+  V  + A  +   LG+ +H  ++ +G +  +F  
Sbjct: 300 GRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAI 359

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
             L  MY + G TR A +VF+E  + +    ++ W  LI G ++ G   +A+  F ++  
Sbjct: 360 SALVHMYSKCGNTRVARRVFNEMHQPD----LVSWTSLIVGYAQNGQPDEALHFFELLLQ 415

Query: 226 --PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA-----MINGFSQNGEAE 278
              K +  ++V ++      G + K  E F  + EK  +  TA     +I+  +++G  +
Sbjct: 416 SGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFK 475

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +A  +   M    V+ + F   S L  C   G LE   R
Sbjct: 476 EAENIIDNM---PVKPDKFLWASLLGGCRIHGNLELAKR 511


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 207/686 (30%), Positives = 346/686 (50%), Gaps = 93/686 (13%)

Query: 5   VFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
           +F+ +TT +    + K++++ S+ I+  +I+    S  +  Q ++IH+  I +  FA + 
Sbjct: 240 LFSEMTTIV----HEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAF 295

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   LI + +   S+  A+++F+    K++  +N ++ G  ++  F +    F  M + +
Sbjct: 296 VCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKEN 355

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  + +T+  V                                      Y Q G  + A 
Sbjct: 356 IPLDVITWSAVIAG-----------------------------------YAQRGYGQEAL 380

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV---------- 234
             F +        + +    L++ C+ +G L + +E      KK + S            
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 235 ------SLIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                 +LID + +    K A  +F  +P  E+ VV+WT MI G++Q G++  AL +F +
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSE 500

Query: 287 MLDA--GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYA 342
           M+     V  N +T+   L ACA + +L  G ++H Y++ +         +   L+DMY+
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG+++ A  VF    +++ ++WT+M+ G  +HGR ++A+  F KM  +G  PD   FL 
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---- 458
           +L AC +SG V   L++FD MR DY +  S +H+  V++LL+R G+  + ++  Q     
Sbjct: 621 LLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPME 680

Query: 459 ------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                   +  KL+ +K ++  SY L+SNIYA   RWKDVAR+R
Sbjct: 681 PSAAIWVALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIR 740

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            LM++  IKK PG S+++       F  G   H L+ EI+S LE ++   +  GY+P T 
Sbjct: 741 QLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETN 800

Query: 553 WVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
           + LH++  EEK   L  HSEKLALA+GL+ T+PG  I+I K L +CGDCHS   Y SKI 
Sbjct: 801 FALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIV 860

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
             EI++RD +RFH+FK+G+CSC  YW
Sbjct: 861 DHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 121/528 (22%), Positives = 221/528 (41%), Gaps = 72/528 (13%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           RL  AI  +  +  +    ++ T  + +       S +     H  I  +   ++  +  
Sbjct: 129 RLDRAIGVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCN 188

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRL- 123
            L++  S   S++ A  +FD  T K +     +N ++    + S+ ++ +  F  M  + 
Sbjct: 189 ALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIV 248

Query: 124 -----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
                + R + ++   +  + ASL  L   + +H   +++G   DAFV   L D Y + G
Sbjct: 249 HEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCG 308

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN----VASWV 234
             + A  VF+    K+    V+ WN ++ G ++ G    A ELF  M K+N    V +W 
Sbjct: 309 SMKDAVNVFNVMEFKD----VVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWS 364

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           ++I G+ ++                               G  ++AL  F QM+  G   
Sbjct: 365 AVIAGYAQR-------------------------------GYGQEALDTFQQMILYGSEP 393

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNY------------ISCNDFGLKGAIGTALVDMYA 342
           N  T++S LSACA +GAL  G+  H Y               +  G    +  AL+DMY+
Sbjct: 394 NSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYS 453

Query: 343 KCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGT 398
           KC + +AA  +F     +E++++TWT MI G A +G    A++ F +M+       P+  
Sbjct: 454 KCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAY 513

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH-HTVVVNLLSRVGQDSQGYQNSQ 457
               IL AC +   +++       +   +  E SV      ++++ S+ G D    +N  
Sbjct: 514 TISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCG-DVDTARNVF 572

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           +S  K      ++  S+  + + Y   GR K+   +   MQ+     D
Sbjct: 573 DSMPK------RNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPD 614



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 188/479 (39%), Gaps = 102/479 (21%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL--FASSRITTQL------ 69
           ++ S+     +++ TH  SL+    S   +RQIH +II + L  + +S ++  L      
Sbjct: 18  SVASAECTGRDVSPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSH 77

Query: 70  --ISSASLHKSI----------DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
             +S  SL   +            ALS+ +   P     +N+L+R   E       I   
Sbjct: 78  SYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAI--- 134

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
                                           G+ C ++++G + D F   +        
Sbjct: 135 --------------------------------GVSCRMLRAGTKPDHFTLPY-------- 154

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
                A K   E P   +S S     +  NG                  + NV    +L+
Sbjct: 155 -----ALKACGELPSY-RSGSAFHGLICCNGF-----------------ESNVFVCNALV 191

Query: 238 DGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLD----- 289
             + R G L+ A  +F+++  KG   V+SW +++    +      AL +F +M       
Sbjct: 192 AMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEK 251

Query: 290 -AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
               R++  ++V+ L ACA + AL     +H+Y   N       +  AL+D YAKCG+++
Sbjct: 252 ATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMK 311

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF   + KD+++W AM+ G    G++  A + FK M       D   + A++    
Sbjct: 312 DAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYA 371

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---RVGQDSQGYQNSQNSFTKLL 464
             G  + AL+ F  M   Y  EP   +   +++LLS    +G  SQG +    S  K L
Sbjct: 372 QRGYGQEALDTFQQMIL-YGSEP---NSVTIISLLSACASLGALSQGMETHAYSLKKCL 426


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 311/589 (52%), Gaps = 85/589 (14%)

Query: 130 LTYPFVSKSVASL-----SLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRG- 182
           L  P V K +  L     S L+  R +H   +++GV   DA +  HL    V L      
Sbjct: 10  LLLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPM 69

Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PKKNVASW 233
             A KVF +     K  +V +WN LI G ++IG    AV L+  M       P  +   +
Sbjct: 70  SYAHKVFSKI---EKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPF 126

Query: 234 V---------------------------------SLIDGFMRKGDLKKAGELFEQMPEKG 260
           +                                 SL+  +   GD+  A ++F++MPEK 
Sbjct: 127 LLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V+W ++INGF++NG+ E+ALA++ +M   G++ + FT+VS LSACAK+GAL  G R H 
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHV 246

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y+              L+D+YA+CG +E A  +F E  +K+ ++WT++I GLA++G  ++
Sbjct: 247 YMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKE 306

Query: 381 AIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
           AI+ FK M    G  P    F+ IL AC + G VK    +F  M  +Y IEP ++H   +
Sbjct: 307 AIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCM 366

Query: 440 VNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHP 471
           V+LL+R GQ  + Y+                             ++ +  K+LQL+P H 
Sbjct: 367 VDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHS 426

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             YVLLSN+YA+E RW DV ++R  M R  ++K PG S +EV   VH F  G   H    
Sbjct: 427 GDYVLLSNMYASEQRWSDVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQND 486

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
            I++KL+++    R +GY+P    V  ++ +EEKE AL  HSEK+A+AF LI T     I
Sbjct: 487 MIYAKLKEMTDRLRLEGYVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPI 546

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++VK L +C DCH  +K  SK+  REIV+RD +RFH+FK+G+CSC+DYW
Sbjct: 547 RVVKNLKVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 115/435 (26%), Positives = 203/435 (46%), Gaps = 64/435 (14%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLI---SSASLHKSIDYAL 83
           N+ +T+ +S      S  +LRQIHA  I + +  + + +   LI    S      + YA 
Sbjct: 20  NLLQTYGVS------SLTKLRQIHAFSIRNGVSISDAELGKHLIFYLVSLPSPPPMSYAH 73

Query: 84  SIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVA 140
            +F     P N+ I+N LIRG AE  +  S +S +  M R S  V P+  TYPF+ K+V 
Sbjct: 74  KVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREM-RASGFVEPDTHTYPFLLKAVG 132

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            ++ + LG  +H ++++SG     +V+  L  +Y   G    A+KVFD+ PEK+    ++
Sbjct: 133 KMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----LV 188

Query: 201 LWNVLING-----------------------------------CSKIGYL----RKAVEL 221
            WN +ING                                   C+KIG L    R  V +
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYM 248

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
             +   +N+ S   L+D + R G +++A  LF++M +K  VSWT++I G + NG  ++A+
Sbjct: 249 IKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAI 308

Query: 282 AMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
            +F  M    G+   + T V  L AC+  G ++ G      +S  ++ ++  I     +V
Sbjct: 309 ELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMS-EEYKIEPRIEHFGCMV 367

Query: 339 DMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           D+ A+ G ++ A   +     + +++ W  ++    +HG  +  +    +M     EP+ 
Sbjct: 368 DLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHG--DSDLAELARMKILQLEPNH 425

Query: 398 TVFLAILTACWYSGQ 412
           +    +L+  + S Q
Sbjct: 426 SGDYVLLSNMYASEQ 440


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 207/680 (30%), Positives = 342/680 (50%), Gaps = 76/680 (11%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           +T   I++   S+ S K   +IH QI+         + T LI+  +   S+  A   F  
Sbjct: 106 VTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKR 165

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              +++  +  +I    ++  F      +  M    V PN++T   V  +    + LS G
Sbjct: 166 LEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEG 225

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + ++ L+    +E D  V     +M+   G    A ++F++  +++    V+ WN++I  
Sbjct: 226 KFVYGLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRD----VVTWNIVITL 281

Query: 209 CSKIGYLRKAVELFGMMPKKNV--------------ASWVSLIDGFMRKGDLKKAG---- 250
             +     +AV LFG + +  V               S  SL  G +    +K+AG    
Sbjct: 282 YVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 341

Query: 251 ---------------------ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                                ++F  M  K V++WT M   ++QNG  ++AL +F +M  
Sbjct: 342 AVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQL 401

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G R    T+V+ L  CA + AL+ G ++H++I  N F ++  + TAL++MY KCG +  
Sbjct: 402 EGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAE 461

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  VF +  ++D+L W +M+   A HG Y++ +Q F +M   G + D   F+++L+A  +
Sbjct: 462 AMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSH 521

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------- 454
           SG V     +F +M  D+ I P+ + +  VV+LL R G+  +                  
Sbjct: 522 SGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILW 581

Query: 455 --------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                          ++ +  ++L+  P H  +YV+LSN+YAA G W  V R+R LM+ R
Sbjct: 582 MTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSR 641

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +KK+PG S IE+   VH F  G   H     I+++L+ + +  R  GY+P T+ +LH++
Sbjct: 642 GVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDV 701

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           ++E KE+ L  HSE+LA+AFGLI T PGT ++++K L +C DCH+  KY SK+  REI++
Sbjct: 702 EDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILV 761

Query: 618 RDT-RFHYFKDGTCSCRDYW 636
           RDT RFH FKDG CSC+DYW
Sbjct: 762 RDTHRFHNFKDGRCSCKDYW 781



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 178/415 (42%), Gaps = 46/415 (11%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           ++L+   +S K +   R++H  +       ++ +   LI   +   S+  A  +F+    
Sbjct: 8   VALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILER 67

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K++  +  +I    +   +   +  F  M    V P ++TY  +  + AS   L  G  +
Sbjct: 68  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 127

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I++ G E D FV   L +MY + G  RGA+  F     ++    V+ W  +I  C +
Sbjct: 128 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD----VVSWTAMIAACVQ 183

Query: 212 ------IGYLRKAVELFGMMPKK---------------------------------NVAS 232
                   +L + ++L G++P K                                 +V  
Sbjct: 184 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVMESDVRV 243

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             S ++ F   G L  A  LFE M ++ VV+W  +I  + QN    +A+ +F ++   GV
Sbjct: 244 MNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGV 303

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           +AND T V  L+    + +L  G  +H  +    +     + TAL+ +Y +C     A  
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWK 363

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +F +   KD++TWT M    A +G  ++A+Q F++M   G  P     +A+L  C
Sbjct: 364 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N+IT   ++++  S  S  + + IH  +        + + T L+S     ++   A  I
Sbjct: 305 ANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKI 364

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     K++  + V+    A+N   +  +  F  M     RP   T   V  + A L+ L
Sbjct: 365 FVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAAL 424

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             GR +H  I+++    +  V   L +MY + GK   A  VF    EK     +L+WN +
Sbjct: 425 QKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVF----EKMAKRDILVWNSM 480

Query: 206 INGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   ++ GY  + ++LF  M     K +  S+VS++      G +    + F  M +   
Sbjct: 481 LGAYAQHGYYDETLQLFNQMQLDGVKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 540

Query: 262 VSWTAMING-----FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           ++ T  + G       + G  ++A+ +  ++  +G   +    ++ L AC
Sbjct: 541 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKL--SGCLPDGILWMTLLGAC 588



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           V+ L  C+    ++ G RVH ++    F     +   L+ MYA+CG++  A  VF   + 
Sbjct: 8   VALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILER 67

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           KD+  WT MI      G Y++A+  F +M      P    ++AIL AC  +  +K  +  
Sbjct: 68  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 127

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
              +    F E  V   T ++N+ ++ G      + + +SF +L
Sbjct: 128 HGQILQQGF-EGDVFVGTALINMYNKCG----SVRGAWDSFKRL 166


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  334 bits (857), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 202/650 (31%), Positives = 344/650 (52%), Gaps = 71/650 (10%)

Query: 56  LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
           +H+  + +++   ++S  SL   + YA S+F H    ++  +N ++R    ++  +  + 
Sbjct: 7   IHHKPSLNKLIAHVLSMGSL--GVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQ 64

Query: 116 HFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
            +  ML  S   P+R T+P + K  A L    +G+ LH  +VK  +  D ++   L +MY
Sbjct: 65  SYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124

Query: 175 VQLGKTRGAFKVFDETPEKNK----------------SESVLLWN--------------- 203
              G  + A  +F+    +NK                +E++LL+                
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEK 259
            L++ C+++  L   ++L   + + ++        +L++ + + GDLK A ++F+Q+ +K
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLSDK 244

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRV 318
            V +W+A+I G+ +N  + +AL +F ++   + +R N+ T+++ +SACA++G LE G  V
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV 304

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H+YI+    G   ++  +L+DM++KCG+I+AA  +F     KDL++W +M+ GLA+HG  
Sbjct: 305 HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLG 364

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +A+  F  M  +  +PD   F+ +LTAC ++G V+     F  +   Y +    +H+  
Sbjct: 365 REALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424

Query: 439 VVNLLSRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKH 470
           +V+LL R G  ++                          Y N    + +   LL+L+P +
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTN 484

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
              Y+LLSNIYA    W +V +VR LM  + I+K PG S + ++   H F AG   H   
Sbjct: 485 DGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEI 544

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTT 587
            EI   L  +    +  GY+  T  VL NI + +KEE++  HSEKLAL +GL+++  G  
Sbjct: 545 AEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGR 604

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I I+K L +C DCH+L+K  SKI QR+I LRD  RFH+FKDG+CSCRDYW
Sbjct: 605 IVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 31  ETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           E  + +L+ +    K L    ++H+ I   ++   + + + L++  +    +  A  +FD
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLS 146
             + K+++ ++ LI G  +N+     +  F  +   S +RPN +T   V  + A L  L 
Sbjct: 240 QLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  I ++   +   +   L DM+ + G    A ++FD    K+    ++ WN ++
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKD----LISWNSMV 355

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
           NG +  G  R+A+  F +M   ++     +++ ++      G +++  +LF ++
Sbjct: 356 NGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409



 Score = 42.7 bits (99), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 106/270 (39%), Gaps = 28/270 (10%)

Query: 7   NRLTTAIAPTTNIK--SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
           NR T A+     +   S+ +P N +T   +IS        +  R +H  I       S  
Sbjct: 260 NRSTEALQLFREVAGGSNMRP-NEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVS 318

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   LI   S    ID A  IFD  + K+L  +N ++ GLA +   +  ++ F  M    
Sbjct: 319 LNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTD 378

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGR-------GLHCLIVKS---GVEYDAFVRVHLADMY 174
           ++P+ +T+  V  + +   L+  G+        L+ + +KS   G   D   R  L    
Sbjct: 379 LQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGL---- 434

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVA 231
             L + R   +V    P+        +W  ++  C     L    +A      +   N  
Sbjct: 435 --LAEAREFIRVMPLQPDGA------IWGSMLGACRVYNNLELGEEAARCLLELEPTNDG 486

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
            ++ L + + R+    +  ++ E M EKG+
Sbjct: 487 VYILLSNIYARRKMWNEVKKVRELMNEKGI 516


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 207/688 (30%), Positives = 348/688 (50%), Gaps = 81/688 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N +T   ++ +  + ++ K+   I A+I+     +S+ + T LIS       +D A  +
Sbjct: 258 ANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGL 317

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
            +H   +++  +N ++   A+N      I     M       N++TY  V ++ A+L  L
Sbjct: 318 LEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEAL 377

Query: 146 SLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           S GR +H  ++  G+ + +  V   +  MY + G+T  A  VF+  P K+     + WN 
Sbjct: 378 SQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDD----VSWNA 433

Query: 205 LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG--------------------- 239
           +IN        + A+ELF  M     + N  + +SL++                      
Sbjct: 434 VINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGG 493

Query: 240 ---------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ--NGEAEKALA 282
                          + R G L  A + F+ + EKG+V+W+ ++  ++Q  +G   +A  
Sbjct: 494 FGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFK 553

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMY 341
            F +M   G++  + T VSAL ACA +  LE G  +H   + + F      +G  +++MY
Sbjct: 554 FFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMY 613

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            KCG+   A LVF +  EK L++W ++I   A +G   +A+   ++M+  G +PD    +
Sbjct: 614 GKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSV 673

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------- 447
           +IL    ++G ++  +  F S   D+ +EPS      +V+LL+R G              
Sbjct: 674 SILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPA 733

Query: 448 ------------QDSQGYQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                          + Y + Q       ++ +L+P+H  S+V+L+N+YA+ GRW D +R
Sbjct: 734 CQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASR 793

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           +R +M+R S+KK+PG S+IE++G VH F +G   H   +EI   LE +    RE GY+P 
Sbjct: 794 IRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPD 853

Query: 551 TEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
           T  V+H+++E +KEE L  HSE+LA+ FGL+ T PG TI++VK L +C DCH+  K  S 
Sbjct: 854 TTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISS 913

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +  REIV+RD +RFH+FK G CSC D+W
Sbjct: 914 VVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 192/440 (43%), Gaps = 44/440 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQIH+ ++   L ++  I+  L++     + +  A  +FD    +++  +  ++   A+N
Sbjct: 78  RQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQN 137

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             +   +     M    V+PN++T+  +    A L LL LGR +H  I+  G+E D  + 
Sbjct: 138 GCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILG 197

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
             L  MY   G       VF    +     SVLLW  +I GCS+ G   + + +F  M  
Sbjct: 198 NALVHMYGSCGSFDDMKSVFSRMGQS----SVLLWTTMIAGCSQNGQYEEGLLVFRKMDL 253

Query: 227 ---KKNVASWV-----------------------------------SLIDGFMRKGDLKK 248
              K N  +++                                   SLI  + + G L +
Sbjct: 254 EGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDR 313

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  L E M ++ VV+W AM+   +QNG+  +A+ +  +M   G  AN  T +S L ACA 
Sbjct: 314 AKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACAN 373

Query: 309 VGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           + AL  G  +H   + C     + A+G +++ MY KCG  EAA  VF     KD ++W A
Sbjct: 374 LEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNA 433

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           +I     + +++ A++ F  M   G   +    L++L AC     +KLA           
Sbjct: 434 VINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGG 493

Query: 428 FIEPSVKHHTVVVNLLSRVG 447
           F   S      VVN+ +R G
Sbjct: 494 FGGNSTAVGNSVVNMYARCG 513



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/365 (24%), Positives = 166/365 (45%), Gaps = 43/365 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           AL +FD  + KN+  + +++   ++N H++  +  F  M     RP+++ +     + A+
Sbjct: 11  ALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVFVIALDACAA 70

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              L  GR +H  +V SG+  +  +   L +MY +      A KVFD    ++    V+ 
Sbjct: 71  SGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRD----VVS 126

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLID------------------- 238
           W  ++   ++ G   +A+E    M     K N  ++V+++D                   
Sbjct: 127 WTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRII 186

Query: 239 --GFMRKGDLKKA--------------GELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
             G    G L  A                +F +M +  V+ WT MI G SQNG+ E+ L 
Sbjct: 187 NEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLL 246

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   GV+AN+ T +S +  C  + A++ G  +   I  + F     + T+L+ +Y 
Sbjct: 247 VFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYG 306

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           +CG ++ A  +     ++D++ W AM+   A +G   +AI   ++M   G   +   +L+
Sbjct: 307 QCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLS 366

Query: 403 ILTAC 407
           +L AC
Sbjct: 367 VLEAC 371



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 200/471 (42%), Gaps = 48/471 (10%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N +T   I+ +          R+IH +II   L     +   L+       S D   
Sbjct: 156 KP-NQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMK 214

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           S+F      ++ ++  +I G ++N  ++  +  F  M    V+ N +TY  + +   +L 
Sbjct: 215 SVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLD 274

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            +  G  +   I++S       +   L  +Y Q G    A  + +   +++    V+ WN
Sbjct: 275 AVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRD----VVAWN 330

Query: 204 VLINGCSKIGYLRKAVELFGMMP------------------------------------- 226
            ++  C++ G   +A+ L   M                                      
Sbjct: 331 AMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLC 390

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
              ++ VA   S+I  + + G  + A  +FE MP K  VSW A+IN    N + + AL +
Sbjct: 391 GLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALEL 450

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYA 342
           F  M   G+R+N+FT++S L AC  +  L+   ++H   +   FG    A+G ++V+MYA
Sbjct: 451 FHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYA 510

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMI--WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           +CG++  A   F   +EK L+ W+ ++  +  +  G   +A ++F++M   G +P    F
Sbjct: 511 RCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTF 570

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           ++ L AC     ++   +         F+E S+     ++N+  + G  S 
Sbjct: 571 VSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSD 621



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 127/274 (46%), Gaps = 43/274 (15%)

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP 226
           MY +  +   A  VFD    KN    V  W +++   S+ G+ R+A+ELF      G  P
Sbjct: 1   MYGKCARVTDALMVFDGISAKN----VFSWTMMMAAYSQNGHYREALELFTRMQWEGTRP 56

Query: 227 KK---------------------------------NVASWVSLIDGFMRKGDLKKAGELF 253
            K                                 N+    SL++ + +  D+  A ++F
Sbjct: 57  DKVVFVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVF 116

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           + M  + VVSWTAM+  ++QNG   +AL    +M   GV+ N  T V+ +  CAK+  L+
Sbjct: 117 DGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLD 176

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G ++H+ I        G +G ALV MY  CG+ +    VF    +  +L WT MI G +
Sbjct: 177 LGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCS 236

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +G+YE+ +  F+KM   G + +   +++++  C
Sbjct: 237 QNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVC 270



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 8/166 (4%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KC  +  A +VF     K++ +WT M+   + +G Y +A++ F +M + GT PD  V
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459
           F+  L AC  SG++        S+     +   +  + ++ N L  +    Q    ++  
Sbjct: 61  FVIALDACAASGELDHGRQIHSSV-----VGSGLTSNIIISNSLVNMYGKCQDVPCAEKV 115

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           F  +L    +   S+  +  +YA  G W       + M    +K +
Sbjct: 116 FDGMLL---RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPN 158


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  334 bits (856), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 208/685 (30%), Positives = 350/685 (51%), Gaps = 71/685 (10%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           IKS++   + +    ++SL  +    K+ R++   +   N++  + + ++        +S
Sbjct: 125 IKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKES 184

Query: 79  I----------------DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
           I                + A  +FD    +++  +N +I G   N   +  +  +  M+ 
Sbjct: 185 ICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMY 244

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           L +  +  T   V    A+   LSLG+ +H L +KS  E        L DMY + G   G
Sbjct: 245 LGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDG 304

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLID 238
           A +VF++  E+N    V+ W  +I G ++ G    A+ L   M K+    +V +  S++ 
Sbjct: 305 ALRVFEKMGERN----VVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILH 360

Query: 239 GFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-- 292
              R G L    ++ + +     E  +    A+++ +++ G  + A ++F  M+   +  
Sbjct: 361 ACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIIS 420

Query: 293 --------RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
                   + +  T+   L ACA + ALE G  +H YI  N +     +  ALVD+Y KC
Sbjct: 421 WNTMIGELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKC 480

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +  A L+F     KDL++WT MI G  +HG   +AI  F +M  +G EPD   F++IL
Sbjct: 481 GVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISIL 540

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------- 455
            AC +SG ++    FF  M+ D+ IEP ++H+  +V+LLSR G  S+ Y+          
Sbjct: 541 YACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPD 600

Query: 456 -------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                              ++    ++ +L+P++   YVLL+NIYA   +W++V R+R  
Sbjct: 601 ATIWGALLCGCRIYHDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREK 660

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
           + ++ ++K+PG S+IE+ G V+ F +G    H  +K+I S L+ +    +E+GY P T++
Sbjct: 661 IGKKGLRKNPGCSWIEIKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKY 720

Query: 554 VLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
            L N  E +KE AL  HSEKLA+AFGL+   P  T+++ K L +CGDCH + K+ SK ++
Sbjct: 721 ALINADEMQKEMALCGHSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETR 780

Query: 613 REIVLRDT-RFHYFKDGTCSCRDYW 636
           REIVLRD+ RFH+FK+G CSCR +W
Sbjct: 781 REIVLRDSNRFHHFKNGYCSCRGFW 805



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 161/344 (46%), Gaps = 39/344 (11%)

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS-LSLLSLGR-----GLHCLIVKSGVE-- 161
           F SC+      +R+S  P R     V+   A  L    LG       L C+  KS +E  
Sbjct: 46  FSSCLP-----IRISATPTRTIDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETK 100

Query: 162 -YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
            Y + +++      +  GK     KV       N +   +L   L++  +  G L++   
Sbjct: 101 TYSSVLQLCAGSKSLTDGK-----KVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRR 155

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKK--------------------AGELFEQMPEKG 260
           +F  M KKNV  W  ++  + + GD K+                    A ELF+++ ++ 
Sbjct: 156 VFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRD 215

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           V+SW +MI+G+  NG  E+ L ++ QM+  G+  +  T++S L  CA  G L  G  VH+
Sbjct: 216 VISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHS 275

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
               + F  +      L+DMY+KCG+++ A  VF +  E+++++WT+MI G    GR + 
Sbjct: 276 LAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDG 335

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           AI+  ++M   G + D     +IL AC  SG +    +  D ++
Sbjct: 336 AIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIK 379


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 219/736 (29%), Positives = 359/736 (48%), Gaps = 108/736 (14%)

Query: 5   VFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQL-RQIHAQIILHNLFASS 63
           +F R   A+    ++ + H+ S+    + +++  H ++   +L R+ HA  + H      
Sbjct: 130 LFRRWGHALDALRDMLADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFLDKG 189

Query: 64  RIT---TQLISSASLHKSIDYALSIFDHFTPK----NLHIFNVLIRGLAENSHFQSCISH 116
           R       L+S  +    +D A  +F  F+      +L  +N +I  L +    +  +  
Sbjct: 190 RERFPFNALLSMYARLGLVDDAQRLF--FSSGAGVGDLVTWNTMISLLVQGGRCEEAVQV 247

Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYV 175
              M+ L VRP+ +T+     + + L LL +GR +H  ++K   +  ++FV   L DMY 
Sbjct: 248 LYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLAANSFVASALVDMYA 307

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL-RKAVELF------------ 222
              +   A +VFD  PE  +   + +WN +I G ++ G +  +A+ELF            
Sbjct: 308 SNEQVSHARRVFDMVPEHGRQ--LGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPS 365

Query: 223 -----GMMP-------------------KKNVAS----WVSLIDGFMRKGDLKKAGELFE 254
                G++P                   K+++AS      +L+D + R G + +A  +F 
Sbjct: 366 ETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFA 425

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML---------------DAGVRA----- 294
            +  + +VSW  +I G    G   +A  +  +M                D  V       
Sbjct: 426 MIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMP 485

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N+ T+++ L  CA + A   G  +H Y   +      A+G+ALVDMYAKCG +  A  VF
Sbjct: 486 NNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVF 545

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQV 413
                ++++TW  +I    +HG  ++A+  F +M+ +G   P+   F+A L AC +SG V
Sbjct: 546 DRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLV 605

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------------------- 453
              L  F  M+ DY  EP+   H  VV++L R G+  + Y                    
Sbjct: 606 DRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTML 665

Query: 454 ---------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    +  + +  +L +L+P   S YVLL NIY+A G W++   VR +M++R + K
Sbjct: 666 GACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAK 725

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-E 561
           +PG S+IE++G +HRF AG   H  + ++H+ ++ +    R +GY+P T  VLH++ E E
Sbjct: 726 EPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAE 785

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           K   L  HSEKLA+AFGL++  PG TI++ K L +C DCH   K+ S++  REIVLRD  
Sbjct: 786 KAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVR 845

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+F+DGTCSC DYW
Sbjct: 846 RFHHFRDGTCSCGDYW 861


>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 462

 Score =  334 bits (856), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/435 (40%), Positives = 264/435 (60%), Gaps = 33/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           SL+  +   GD+  A ++F++MPEK +V+W ++INGF++NG+ E+ALA++ +M   G++ 
Sbjct: 28  SLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKP 87

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + FT+VS LSACAK+GAL  G RVH Y+              L+D+YA+CG +E A  +F
Sbjct: 88  DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 147

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQV 413
            E  +K+ ++WT++I GLA++G  ++AI+ FK M  + G  P    F+ IL AC + G V
Sbjct: 148 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 207

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------ 455
           K    +F  MR +Y IEP ++H   +V+LL+R GQ  + Y+                   
Sbjct: 208 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 267

Query: 456 ----------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                     ++ +  ++LQL+P H   YVLLSN+YA+E RW DV ++R  M R  +KK 
Sbjct: 268 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 327

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEK 562
           PG S +EV   VH F  G   H  +  I++KL+++    R +GY+P    V  ++ +EEK
Sbjct: 328 PGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEK 387

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TR 621
           E A+  HSEK+A+AF LI T   + I +VK L +C DCH  +K  SK+  REIV+RD +R
Sbjct: 388 ENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSR 447

Query: 622 FHYFKDGTCSCRDYW 636
           FH+FK+G+CSC+DYW
Sbjct: 448 FHHFKNGSCSCQDYW 462



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 141/311 (45%), Gaps = 50/311 (16%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           + LG  +H ++++SG     +V+  L  +Y   G    A+KVFD+ PEK+    ++ WN 
Sbjct: 4   VRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----LVAWNS 59

Query: 205 LING-----------------------------------CSKIGYL----RKAVELFGMM 225
           +ING                                   C+KIG L    R  V +  + 
Sbjct: 60  VINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVG 119

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
             +N+ S   L+D + R G +++A  LF++M +K  VSWT++I G + NG  ++A+ +F 
Sbjct: 120 LTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 179

Query: 286 QMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA 342
            M    G+   + T V  L AC+  G ++ G      +   ++ ++  I     +VD+ A
Sbjct: 180 YMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMR-EEYKIEPRIEHFGCMVDLLA 238

Query: 343 KCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           + G ++ A   +     + +++ W  ++    +HG  +  +  F ++     EP+ +   
Sbjct: 239 RAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPNHSGDY 296

Query: 402 AILTACWYSGQ 412
            +L+  + S Q
Sbjct: 297 VLLSNMYASEQ 307



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/267 (22%), Positives = 116/267 (43%), Gaps = 47/267 (17%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    K+L  +N +I G AEN   +  ++ +  M    ++P+  T   +  + A 
Sbjct: 42  AYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAK 101

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +  L+LG+ +H  ++K G+  +      L D+Y + G+   A  +FDE  +KN     + 
Sbjct: 102 IGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS----VS 157

Query: 202 WNVLINGCSKIGYLRKAVELF-------GMMP---------------------------- 226
           W  LI G +  G+ ++A+ELF       G++P                            
Sbjct: 158 WTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRM 217

Query: 227 ------KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEK 279
                 +  +  +  ++D   R G +KKA E  + MP +  VV W  ++   + +G+++ 
Sbjct: 218 REEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDL 277

Query: 280 ALAMFFQMLDAGVR-ANDFTVVSALSA 305
           A     Q+L      + D+ ++S + A
Sbjct: 278 AEFARIQILQLEPNHSGDYVLLSNMYA 304



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 60/102 (58%)

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G  +H+ +  + FG    +  +L+ +YA CG++ +A  VF +  EKDL+ W ++I G A 
Sbjct: 7   GETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAE 66

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           +G+ E+A+  + +M   G +PDG   +++L+AC   G + L 
Sbjct: 67  NGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLG 108


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 203/633 (32%), Positives = 318/633 (50%), Gaps = 95/633 (15%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N ++  L ++      I     M+   VRP+ +T+     + + L +LSLGR +H  ++
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 157 K-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           K S +  ++FV   L DMY    +   A +VFD  P  ++   + LWN ++ G ++ G  
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQ--LGLWNAMVCGYAQAGMD 356

Query: 216 RKAVELF-----------------GMMP----------KKNVASWV-------------S 235
            +A+ELF                 G++P          K+ V  +V             +
Sbjct: 357 EEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNA 416

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG---- 291
           L+D + R GD++ A  +F  +  + VVSW  +I G    G    A  +  +M   G    
Sbjct: 417 LMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTD 476

Query: 292 --------------VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
                         V  N+ T+++ L  CA + A   G  +H Y   +      A+G+AL
Sbjct: 477 ATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSAL 536

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPD 396
           VDMYAKCG +  +  VF    +++++TW  +I    +HG  ++AI  F +M+ S   +P+
Sbjct: 537 VDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPN 596

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-- 454
              F+A L AC +SG V   +  F SM+ ++ ++P+   H   V++L R G+  + Y   
Sbjct: 597 EVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSII 656

Query: 455 ----------NSQNSF-----------------TKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                     ++ +SF                  +L QL+P   S YVLL NIY+A G W
Sbjct: 657 TSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLW 716

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
           +  + VR  M++R + K+PG S+IE++G +HRF AG   H  +  +H+ ++ +    R Q
Sbjct: 717 EKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQ 776

Query: 546 GYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P T  VLH+I+E EK   L  HSEKLA+AFGL++T PG TI++ K L +C DCH   
Sbjct: 777 GYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAA 836

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+ S++  REIVLRD  RFH+F DG CSC DYW
Sbjct: 837 KFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 82/395 (20%), Positives = 173/395 (43%), Gaps = 73/395 (18%)

Query: 48  RQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRG 103
           R++HA ++   +L A+S + + L+   + H+ +  A  +FD   P   + L ++N ++ G
Sbjct: 291 REMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFD-MVPGGHRQLGLWNAMVCG 349

Query: 104 LAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
            A+    +  +  F  M     V P+  T   V  + A     +    +H  ++K G+  
Sbjct: 350 YAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMAD 409

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA---- 218
           + FV+  L D+Y +LG    A  +F     ++    V+ WN LI GC   G++  A    
Sbjct: 410 NPFVQNALMDLYARLGDMEAARWIFAAIEPRD----VVSWNTLITGCVVQGHIHDAFQLV 465

Query: 219 ------------------------------VELFGMMP---------------------- 226
                                         V L  ++P                      
Sbjct: 466 REMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHA 525

Query: 227 -KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
              ++A   +L+D + + G L  +  +F+++P++ V++W  +I  +  +G  ++A+A+F 
Sbjct: 526 LDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFD 585

Query: 286 QMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYA 342
           +M+ +   + N+ T ++AL+AC+  G ++ G+ + + +  N  G++    +    VD+  
Sbjct: 586 RMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRN-HGVQPTPDLHACAVDILG 644

Query: 343 KCGNI-EAASLVFG-ETKEKDLLTWTAMIWGLAIH 375
           + G + EA S++   E  E+ +  W++ +    +H
Sbjct: 645 RAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLH 679



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 9/185 (4%)

Query: 235 SLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           +L+  + R G +  A  LF  +     P  GVV+W  M++   Q+G   +A+ + + M+ 
Sbjct: 205 ALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVA 264

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIE 348
            GVR +  T  SAL AC+++  L  G  +H Y+   +D      + +ALVDMYA    + 
Sbjct: 265 RGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVG 324

Query: 349 AASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILT 405
            A  VF       + L  W AM+ G A  G  E+A++ F +M   +G  P  T    +L 
Sbjct: 325 VARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLP 384

Query: 406 ACWYS 410
           AC  S
Sbjct: 385 ACARS 389



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 84/181 (46%), Gaps = 8/181 (4%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+  + R GDL  A  LF  MP +  V++ ++I           AL     ML  G   
Sbjct: 101 ALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPL 160

Query: 295 NDFTVVSALSACAKVGA-LEAGVRVHNYISCNDF--GLKGAIGTALVDMYAKCGNIEAAS 351
           + FT+VS L AC+ +   L  G   H +   N F  G +     AL+ MYA+ G ++ A 
Sbjct: 161 SSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQ 220

Query: 352 LVFGETKEKD-----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           ++FG     D     ++TW  M+  L   GR  +AI+    M+  G  PDG  F + L A
Sbjct: 221 MLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPA 280

Query: 407 C 407
           C
Sbjct: 281 C 281



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 54/115 (46%), Gaps = 2/115 (1%)

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDF--GLKGAIGTALVDMYAKCGNIEAASL 352
           + F +  A  + A + +L A   +H      D   G   A+  AL+  YA+CG++ AA  
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +F     +D +T+ ++I  L +  R+  A+   + M+  G        +++L AC
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLAC 172



 Score = 40.4 bits (93), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 50/264 (18%), Positives = 108/264 (40%), Gaps = 13/264 (4%)

Query: 7   NRLTTAIAPTTNIKSSHKP--SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
            R T A        +  +P   NN+T   ++       +  + ++IH   + H L +   
Sbjct: 472 GRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIA 531

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRL 123
           + + L+   +    +  + ++FD    +N+  +NVLI     +      I+ F  M +  
Sbjct: 532 VGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSN 591

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
             +PN +T+     + +   ++  G  L H +    GV+    +     D+  + G+   
Sbjct: 592 EAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDE 651

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLI 237
           A+ +   T  +   + V  W+  +  C       +G +  A  LF + P +  + +V L 
Sbjct: 652 AYSII--TSMEPGEQQVSAWSSFLGACRLHRNVPLGEI-AAERLFQLEPDE-ASHYVLLC 707

Query: 238 DGFMRKGDLKKAGELFEQMPEKGV 261
           + +   G  +K+ E+  +M ++GV
Sbjct: 708 NIYSAAGLWEKSSEVRNRMRQRGV 731


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 209/677 (30%), Positives = 337/677 (49%), Gaps = 78/677 (11%)

Query: 34  IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I SL+ +  S   L   +Q+H+ ++   +     I   L+        I  AL IF    
Sbjct: 247 IASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGD 306

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             N+ ++N+++    + S        F  M+   VRPN  TYP + ++      ++LG  
Sbjct: 307 RTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQ 366

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H L +K+G E D +V   L DMY + G    A ++ +    K+    V+ W  +I G  
Sbjct: 367 IHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKD----VVSWTSMIAGYV 422

Query: 211 KIGYLRKAVE------LFGMMPKK---------------------------------NVA 231
           +  + ++A+E      LFG+ P                                   +V+
Sbjct: 423 QHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVS 482

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
            W +L++ + R G  K+A  LFE +  K  ++W  M++GF+Q+G  E+AL +F +M  AG
Sbjct: 483 IWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAG 542

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           V+ N FT VS++SA A +  ++ G ++H  +       +  +  AL+ +Y KCG+IE A 
Sbjct: 543 VKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAK 602

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
           + F E  E++ ++W  +I   + HG   +A+  F +M   G +P+   F+ +L AC + G
Sbjct: 603 MQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVG 662

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------NSQNSFT---- 461
            V+  L +F SM  ++ I P   H+  VV++L R GQ  +  +       S N+      
Sbjct: 663 LVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTL 722

Query: 462 ------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                              LL+L+P   +SYVLLSN YA  G+W     VR +M+ R ++
Sbjct: 723 LSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVR 782

Query: 504 KDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KE 560
           K+PG S+IEV   VH F  G   H LA +I+  L D+     + GY+ G  ++ H   KE
Sbjct: 783 KEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKE 842

Query: 561 EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT 620
           +K+     HSEKLA+AFGL+   P   ++++K L +C DCH+ MK+ S++  REIVLRD 
Sbjct: 843 QKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDV 902

Query: 621 -RFHYFKDGTCSCRDYW 636
            RFH+F +G CSC D+W
Sbjct: 903 YRFHHFNNGNCSCGDFW 919



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/435 (26%), Positives = 199/435 (45%), Gaps = 54/435 (12%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           + + PT  + SS           ++S    +   +Q R +HAQ+      + + +   LI
Sbjct: 137 SGVVPTPYVLSS-----------VLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALI 185

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
           +      S+  A  +F      +   FN LI   A+  + +S +  F  M      P+ +
Sbjct: 186 ALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCV 245

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T   +  + AS+  L+ G+ LH  ++K+G+  D  +   L D+YV+ G    A ++F   
Sbjct: 246 TIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSG 305

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------ 232
              N    V+LWN+++    +I  L K+ +LF  M    V                    
Sbjct: 306 DRTN----VVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEI 361

Query: 233 -------------------WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                              +VS  LID + + G L KA  + E +  K VVSWT+MI G+
Sbjct: 362 NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGY 421

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
            Q+   ++AL  F  M   G+  ++  + SA+SACA + A+  G ++H+ +  + +    
Sbjct: 422 VQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADV 481

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
           +I  ALV++YA+CG  + A  +F   + KD +TW  M+ G A  G YE+A++ F KM  +
Sbjct: 482 SIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQA 541

Query: 392 GTEPDGTVFLAILTA 406
           G + +   F++ ++A
Sbjct: 542 GVKYNVFTFVSSISA 556



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 114/492 (23%), Positives = 201/492 (40%), Gaps = 49/492 (9%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKS-IDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           IHA+ I   L    RI   L+      K  +  A  +F+  + ++   +  ++ G A N 
Sbjct: 64  IHAKAITCGL-GEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNG 122

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +  +  M    V P       V  +    +L   GR +H  + K G   +  V  
Sbjct: 123 LGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGN 182

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNK---------------SESVLL---------WN- 203
            L  +Y++ G    A +VF E P  ++                ES L          W  
Sbjct: 183 ALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTP 242

Query: 204 ------VLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                  L+  C+ IG L K  +L       GM P   +    SL+D +++ G + +A E
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEG--SLLDLYVKCGVIVEALE 300

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F+      VV W  M+  + Q  +  K+  +F QM+ AGVR N+FT    L  C   G 
Sbjct: 301 IFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGE 360

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           +  G ++H       F     +   L+DMY+K G ++ A  +    + KD+++WT+MI G
Sbjct: 361 INLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAG 420

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
              H   ++A++ FK M   G  PD     + ++AC     ++        +    +   
Sbjct: 421 YVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGY-SA 479

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
            V     +VNL +R G+       S+ +F+    ++ K   ++  + + +A  G +++  
Sbjct: 480 DVSIWNALVNLYARCGR-------SKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEAL 532

Query: 492 RVRTLMQRRSIK 503
            V   M +  +K
Sbjct: 533 EVFIKMYQAGVK 544



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 70/313 (22%), Positives = 137/313 (43%), Gaps = 26/313 (8%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +NI     IS      + +Q +QIH+++ +    A   I   L++  +       A S+F
Sbjct: 445 DNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYARCGRSKEAFSLF 504

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    K+   +N ++ G A++  ++  +  F+ M +  V+ N  T+     + A+L+ + 
Sbjct: 505 EAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSISASANLADIK 564

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  ++K+G   +  V   L  +Y + G    A   F E  E+N     + WN +I
Sbjct: 565 QGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNH----VSWNTII 620

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQM-PEKGV 261
             CS+ G+  +A++LF  M     K N  +++ ++      G +++    F+ M  E G+
Sbjct: 621 TSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEHGI 680

Query: 262 VS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
                 +  +++   + G+ ++A     +M    V AN     + LSAC          R
Sbjct: 681 HPRPDHYACVVDILGRAGQLDRARKFVEEM---PVSANAMVWRTLLSAC----------R 727

Query: 318 VHNYISCNDFGLK 330
           VH  I   +   K
Sbjct: 728 VHKNIEIGELAAK 740



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 74/156 (47%), Gaps = 7/156 (4%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSAC-AKVGAL 312
           M  +   S    + GF  + + EK L++F   +    G+ + DF    AL  C   V   
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFAC--ALRECRGSVKHW 58

Query: 313 EAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
                +H   I+C   G     G  L+D+YAK G ++ A  VF +   +D ++W AM+ G
Sbjct: 59  PLVPVIHAKAITCG-LGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSG 117

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            A +G  E+A+  + +M  SG  P   V  ++L+AC
Sbjct: 118 YARNGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSAC 153


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 200/602 (33%), Positives = 309/602 (51%), Gaps = 66/602 (10%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +IS  +    +D A  +  H   +N+  +  LI G +        +  F  ML   + 
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE 234

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+ +T   +  + A L  L  GR LH L+ + G+     + V L DMY + G    A++V
Sbjct: 235 PDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEV 294

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           FD      + +S                                  W ++IDG+ + G +
Sbjct: 295 FDALGRGRRPQS----------------------------------WNAMIDGYCKLGHV 320

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             A  LF+QM ++ +V++ ++I G+   G   +AL +F QM    +RA++FT+VS L+AC
Sbjct: 321 DVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVSLLTAC 380

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A +GAL  G  +H  I      +   +GTAL+DMY KCG +E ASLVF     +D+ TW+
Sbjct: 381 ASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVRDVHTWS 440

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI GLA +G  + A++YF  M   G +P+   ++AILTAC +S  +     +F+ MR  
Sbjct: 441 AMIAGLAFNGMGKAALEYFFWMKVDGFQPNSVTYIAILTACSHSCLLDEGRLYFEEMRLL 500

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQN 458
           + I P ++H+  +++LL R G   +                                ++N
Sbjct: 501 HNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRTMPMQPNAVIWASILSACRVHKDANLARN 560

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +   LL+L+P   + YV L NIY    +W+D +++R LM+ R +KK  G+S I V G VH
Sbjct: 561 AAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDASQIRRLMEERGVKKAAGYSSITVAGQVH 620

Query: 519 RFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLAL 575
           +F      H    EI + +E+I    +  GY P T  +  ++ +EEKE AL  HSEK+A+
Sbjct: 621 KFIVCDRTHPQIMEITAMMEEITRRLKSVGYSPITSQITVDVDEEEKEHALLAHSEKIAI 680

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGLI   P   + I+K L +C DCHS +K  S+I  REI++RD +RFH+F+DGTCSC D
Sbjct: 681 AFGLISLAPNLPLHIIKNLRVCEDCHSAIKLISRIWNREIIVRDRSRFHHFRDGTCSCND 740

Query: 635 YW 636
           +W
Sbjct: 741 FW 742



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 82/195 (42%), Gaps = 33/195 (16%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           L+ A  LF++MP    +  TA+   F  +   E  L ++ +M   GV  + FT       
Sbjct: 53  LRYALCLFDRMPCSTFLFDTALRACFRASSGPESPLILYRRMRRTGVCTDAFTFHFLFKC 112

Query: 306 CAKVGA----------------------LEAGVRVHNYISC----------NDFGLKGAI 333
           CA+  A                      L +   +H Y+            +D  +K A+
Sbjct: 113 CARGRAHVLLCQMLHAACFRTMLPSAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAV 172

Query: 334 G-TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
             T ++   AK G ++ A  +   +  +++++WT +I G +  GR  +A+  F  M+  G
Sbjct: 173 AWTTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDG 232

Query: 393 TEPDGTVFLAILTAC 407
            EPD    + +L+AC
Sbjct: 233 IEPDEVTVIGLLSAC 247


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 201/624 (32%), Positives = 317/624 (50%), Gaps = 70/624 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +++HAQII   L     I   L+++      I  AL +FD    ++   +  L+     +
Sbjct: 23  KKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQLFDALPRRDPVAWASLLTACNLS 82

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL--GRGLHCLIVKSGVEYDAF 165
           +     +S    +L     P+   +  + K+ A+L +L +  G+ +H     S    D  
Sbjct: 83  NRPHRALSISRSLLSTGFHPDHFVFASLVKACANLGVLHVKQGKQVHARFFLSPFSDDDV 142

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V+  L DMY + G       VFD                                    +
Sbjct: 143 VKSSLIDMYAKFGLPDYGRAVFDS-----------------------------------I 167

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
              N  SW ++I G+ R G   +A  LF Q P + + +WTA+I+G  Q+G    A  +F 
Sbjct: 168 SSLNSISWTTMISGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFV 227

Query: 286 QMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
           +M   G+   D  V+S++  ACA +   E G ++H  +    +     I  AL+DMYAKC
Sbjct: 228 EMRHEGISVTDPLVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKC 287

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            ++ AA  +F E   KD+++WT++I G A HG+ E+A+  + +M+ +G +P+   F+ ++
Sbjct: 288 SDLVAAKYIFCEMCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLI 347

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------ 452
            AC ++G V      F +M  D+ I PS++H+T +++L SR G   +             
Sbjct: 348 HACSHAGLVSKGRTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPD 407

Query: 453 -------------YQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                        + N+Q +      LL LKP+ PSSY+LLSNIYA  G W+DV++VR L
Sbjct: 408 EPTWAALLSSCKRHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKL 467

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           M     KK PG+S I++    H F AG   H +  EI   + ++    R++GY P T  V
Sbjct: 468 MMTLEAKKAPGYSCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSV 527

Query: 555 LHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           LH++ ++EKE  L  HSE+LA+A+GL++  PGT I+IVK L +CGDCH+++K  S I+ R
Sbjct: 528 LHDMDQQEKERQLFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNR 587

Query: 614 EIVLRDT-RFHYFKDGTCSCRDYW 636
           EI +RD  R+H+FKDG CSC D+W
Sbjct: 588 EIYVRDAKRYHHFKDGNCSCNDFW 611


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 203/643 (31%), Positives = 335/643 (52%), Gaps = 73/643 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-LHKSID-YALSIFDHF 89
           + +IS +    +  Q++QIH  ++   L  S  I T+LI + + L   +D Y   + +  
Sbjct: 51  SSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPV 110

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             +N  ++  +IRG      F   I+ +  M +  + P   T+  + K+  S+  L+LGR
Sbjct: 111 QFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGSMGDLNLGR 170

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
             H                       Q  + RG   V+             + N +I+  
Sbjct: 171 QFH----------------------AQTFRLRGFCFVY-------------VGNTMIDMY 195

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
            K G +  A ++F  MP+++V SW  LI  + R G+++ A +LFE +P K +V+WTAM+ 
Sbjct: 196 VKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVT 255

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           GF+QN + ++AL  F +M  +G+RA++ TV   +SACA++GA +   R       + +  
Sbjct: 256 GFAQNAKPQEALEYFDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSP 315

Query: 330 KG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                IG+AL+DMY+KCGN+E A  VF     K++ ++++MI GLA HGR ++A+  F  
Sbjct: 316 SDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHY 375

Query: 388 MM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           M+  +  +P+   F+  LTAC +SG V      F SM   + +EP+  H+T +V+LL R 
Sbjct: 376 MVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRA 435

Query: 447 GQDSQGYQ------------------------NSQN----SFTKLLQLKPKHPSSYVLLS 478
           G+  +  +                        N+ +    +   L +L+P    +Y+LLS
Sbjct: 436 GRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFELEPDIIGNYILLS 495

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI-EVNGHVHRFEAGG--HKLAKEIHSKL 535
           N+Y++ G W  V  VR L++ + +KK P  S++ + NG +H+F  G   H ++K+I  KL
Sbjct: 496 NVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSKKIQDKL 555

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E+++      GY P    V +++ +  K   L  H+EKLALAF L+ T    TIKI+K L
Sbjct: 556 EELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDYTIKIMKNL 615

Query: 595 TICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +C DCH  M+ AS+++ R I++RD  RFH+F+ G CSC D+W
Sbjct: 616 RMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 204/651 (31%), Positives = 320/651 (49%), Gaps = 68/651 (10%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++      N++T   +IS        +   +++A I    +  +  + + L+       +
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ID A  +FD +   NL + N +          +  +  F  M+   VRP+R++      S
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            + L  +  G+  H  ++++G E    +   L DMY++  +   AF++FD          
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR--------- 397

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
                                     M  K V +W S++ G++  G++  A E FE MPE
Sbjct: 398 --------------------------MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVR 317
           K +VSW  +I+G  Q    E+A+ +F  M    GV A+  T++S  SAC  +GAL+    
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW 491

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           ++ YI  N   L   +GT LVDM+++CG+ E+A  +F     +D+  WTA I  +A+ G 
Sbjct: 492 IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 551

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            E+AI+ F  M+  G +PDG  F+  LTAC + G V+     F SM   + + P   H+ 
Sbjct: 552 AERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG 611

Query: 438 VVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPK 469
            +V+LL R G   +  Q  ++                            +  K+  L P+
Sbjct: 612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPE 671

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
              SYVLLSN+YA+ GRW D+A+VR  M+ + ++K PG S I++ G  H F +G   H  
Sbjct: 672 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPE 731

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGT 586
              I + L+++   A   G++P    VL ++ E EK   L  HSEKLA+A+GLI +  GT
Sbjct: 732 MPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGT 791

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           TI+IVK L +C DCHS  K+ASK+  REI+LRD  RFHY + G CSC D+W
Sbjct: 792 TIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDFW 842



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 231/542 (42%), Gaps = 93/542 (17%)

Query: 1   MKGHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF 60
           M G+V +     +A TT  K S    +  T+    SL  +  +  +L+  H  +    L 
Sbjct: 3   MLGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSSL-KNCKTIDELKMFHRSLTKQGLD 61

Query: 61  ASSRITTQLISSA---SLHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISH 116
                 T+L++ +      +S+ +A  +F++        ++N LIRG A +      I  
Sbjct: 62  NDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILL 121

Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
           F+ M+   + P++ T+PF   + A       G  +H LIVK G   D FV+  L   Y +
Sbjct: 122 FLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181

Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-----NVA 231
            G+   A KVFDE  E+N    V+ W  +I G ++  + + AV+LF  M +      N  
Sbjct: 182 CGELDSARKVFDEMSERN----VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237

Query: 232 SWV-----------------------------------SLIDGFMRKGDLKKAGELFEQM 256
           + V                                   +L+D +M+   +  A  LF++ 
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
               +    AM + + + G   +AL +F  M+D+GVR +  +++SA+S+C+++  +  G 
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKC-------------------------------G 345
             H Y+  N F     I  AL+DMY KC                               G
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAIL 404
            ++AA   F    EK++++W  +I GL     +E+AI+ F  M    G   DG   ++I 
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNS 459
           +AC + G + LA   +      Y+IE +     V+  T +V++ SR G D +   +  NS
Sbjct: 478 SACGHLGALDLAKWIY------YYIEKNGIQLDVRLGTTLVDMFSRCG-DPESAMSIFNS 530

Query: 460 FT 461
            T
Sbjct: 531 LT 532


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 200/650 (30%), Positives = 344/650 (52%), Gaps = 71/650 (10%)

Query: 56  LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCIS 115
           +H+  + +++   ++S  SL   + YA S+F H    ++  +N ++R    ++  +  + 
Sbjct: 7   IHHKPSLNKLIAHVLSMGSL--GVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQ 64

Query: 116 HFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
            +  ML  S   P+R T+P + K  A L    +G+ LH  +VK  +  D ++   L +MY
Sbjct: 65  SYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMY 124

Query: 175 VQLGKTRGAFKVFDETPEKNK----------------SESVLLWN--------------- 203
              G  + A  +F+    +NK                +E++LL+                
Sbjct: 125 AACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMA 184

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEK 259
            L++ C+++  L   ++L   + + ++        +L++ + + GDLK A ++F+++ +K
Sbjct: 185 TLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLSDK 244

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRV 318
            V +W+A+I G+ +N  + +AL +F ++   + +R N+ T+++ +SACA++G LE G  V
Sbjct: 245 DVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWV 304

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H+YI+    G   ++  +L+DM++KCG+I+AA  +F     KDL++W +M+ G A+HG  
Sbjct: 305 HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLG 364

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +A+  F+ M  +  +PD   F+ +LTAC ++G V+     F  +   Y +    +H+  
Sbjct: 365 REALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGC 424

Query: 439 VVNLLSRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKH 470
           +V+LL R G  ++                          Y N    + +   LL+L+P +
Sbjct: 425 MVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTN 484

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
              Y+LLSNIYA    W +V +VR LM  + I+K PG S + ++   H F AG   H   
Sbjct: 485 DGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEI 544

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTT 587
            EI   L  +    +  GY+  T  VL NI + +KEE++  HSEKLAL +GL+++  G  
Sbjct: 545 AEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGR 604

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I I+K L +C DCH+L+K  SKI QR+I LRD  RFH+FKDG+CSCRDYW
Sbjct: 605 IVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 110/234 (47%), Gaps = 12/234 (5%)

Query: 31  ETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           E  + +L+ +    K L    ++H+ I   ++   + + + L++  +    +  A  +FD
Sbjct: 180 EVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFD 239

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLS 146
             + K+++ ++ LI G  +N+     +  F  +   S +RPN +T   V  + A L  L 
Sbjct: 240 KLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLE 299

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  I ++   +   +   L DM+ + G    A ++FD    K+    ++ WN ++
Sbjct: 300 TGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKD----LISWNSMV 355

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
           NG +  G  R+A+  F +M   ++     +++ ++      G +++  +LF ++
Sbjct: 356 NGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEI 409


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 208/658 (31%), Positives = 336/658 (51%), Gaps = 57/658 (8%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS----SASLHKSI 79
           KP +    + +  L    +  KQ  Q HA  +       + ++  L+S     AS    +
Sbjct: 145 KPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLL 204

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHF---QSCISHFVFMLRLSVRPNRLTYPFVS 136
             A  +FD    K+   +  ++ G  +N  F   +  +      ++L V  N +   +V+
Sbjct: 205 HSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKL-VAYNAMISGYVN 263

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAF-----VRVHLADMYVQLGKTRGAFKVFDETP 191
             +   +L  + R     +V SG+E D F     +R       +QLGK   A+ +     
Sbjct: 264 CGLYQEALEMVRR-----MVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVL----- 313

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
            + +  S    N L+    K G   +A  +F  MP K++ SW +L+ G++  G + +A  
Sbjct: 314 -RREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F++M EK ++SW  MI+G ++NG  E+ L +F  M   G    D+    A+ +CA +GA
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
              G + H  +    F    + G AL+ MYAKCG +E A  VF      D ++W A+I  
Sbjct: 433 YCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAA 492

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           L  HG   +A+  +++M+  G  PD   FL +LTAC ++G V     +F+SM   Y I P
Sbjct: 493 LGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPP 552

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKL 463
              H+  +++LL R G+ S+     ++                            +  KL
Sbjct: 553 GADHYARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--E 521
             L P+H  +Y+LLSN+YAA G+W++VARVR LM+ R +KK+   S+IE+   VH F  +
Sbjct: 613 FGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVD 672

Query: 522 AGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLALAFGL 579
              H  A+ ++  L+D+    R  GY+P T +VLH+++ +  KE+ L  HSEK+A+AFGL
Sbjct: 673 DTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGL 732

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++  PGTTI+I K L  CGDCH+  ++ SK+ QR+I+LRD  RFH+F++G CSC ++W
Sbjct: 733 MKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 108/437 (24%), Positives = 170/437 (38%), Gaps = 110/437 (25%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF------------- 89
           S +  R +H  II       + I  +LI        +DYA  +FD               
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 90  -----------------TPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
                            TP ++    ++N +I G + N+   S I+ F  M     +P+ 
Sbjct: 89  GYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDD 148

Query: 130 LTYPFVSKSVASLSLLSLGRG----LHCLIVKSGVEYDAFVRVHLADMYVQLGKT----R 181
            TY  V   +A L+L+          H   +KSG  Y   V   L  +Y +   +     
Sbjct: 149 FTYASV---LAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLH 205

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
            A KVFD+ PEK++                                    SW +++ G++
Sbjct: 206 SARKVFDDIPEKDER-----------------------------------SWTTMMTGYV 230

Query: 242 RKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
           + G      EL + M E   +V++ AMI+G+   G  ++AL M  +M+ +G+  ++FT  
Sbjct: 231 KNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFTYP 290

Query: 301 SALSACAKVGALEAGVRVHNYI-------------------SCNDFGLKGAI-------- 333
           S + ACA    L+ G +VH Y+                    C  F    AI        
Sbjct: 291 SVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKD 350

Query: 334 ---GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
                AL+  Y   G+I  A L+F E KEK++L+W  MI GLA +G  E+ ++ F  M  
Sbjct: 351 LVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKR 410

Query: 391 SGTEPDGTVFLAILTAC 407
            G EP    F   + +C
Sbjct: 411 EGFEPCDYAFSGAIKSC 427



 Score = 40.4 bits (93), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 59/144 (40%), Gaps = 2/144 (1%)

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           +L+    VH  I    F     I   L+D+Y K   ++ A  +F E  E D +  T M+ 
Sbjct: 29  SLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVS 88

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G    G    A   F++   S    D  ++ A++T   ++     A+N F  M+ + F  
Sbjct: 89  GYCASGDIALARSVFEETPVSMR--DTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKP 146

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQ 454
               + +V+  L   V  + Q  Q
Sbjct: 147 DDFTYASVLAGLALVVDDEKQCVQ 170


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 205/631 (32%), Positives = 319/631 (50%), Gaps = 102/631 (16%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNR---LTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           IR  A   HF   +S F+ M R S  P      + P   KS A+L L +LG  LH L ++
Sbjct: 20  IRAAAAEGHFCDAVSLFLRM-RASAAPRSSVPASLPAALKSCAALGLSALGASLHALAIR 78

Query: 158 SGVEYDAFVRVHLADMY---------------VQLGKTRGAF----KVFDETPEKNKSES 198
           SG   D F    L ++Y               V +  +  AF    KVFDE  E++    
Sbjct: 79  SGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERD---- 134

Query: 199 VLLWNVLINGCSK-------IGYLRK----------------------------AVELFG 223
           V+ WN L+ GC++       +G++RK                             +E+ G
Sbjct: 135 VVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHG 194

Query: 224 MMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
              +    S V    SLID +        + ++F+ +P +  + W +++ G +QNG  E+
Sbjct: 195 FAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEE 254

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           AL +F +ML AGVR    T  S +  C  + +L  G ++H Y+ C  F     I ++L+D
Sbjct: 255 ALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLID 314

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG I  A  +F +    D+++WTAMI G A+HG   +A+  F++M     +P+   
Sbjct: 315 MYCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHIT 374

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN---- 455
           FLA+LTAC ++G V     +F SM   Y I P+++H   + + L R G+  + Y      
Sbjct: 375 FLAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKM 434

Query: 456 ------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                                   ++    K+++L+P+   S+V+LSN+Y+A GRW + A
Sbjct: 435 QIKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAA 494

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQ----GY 547
            +R  M+++ +KKDP  S+IEV   +H F A  H  +   + ++ D +    EQ    G+
Sbjct: 495 HLRESMRKKGMKKDPACSWIEVKSKLHVFVA--HDRSHPWYDRIIDALNAFSEQMAREGH 552

Query: 548 MPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
           +P TE V  +I+EE +  + C HSEKLA+ FG+I T  GT I+++K L +C DCH++ K+
Sbjct: 553 VPNTEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKF 612

Query: 607 ASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            SK++ REIV+RD  RFH+FKDG CSC D+W
Sbjct: 613 ISKLADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 124/270 (45%), Gaps = 13/270 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           ++ T + ++ +       K+  ++H     +   +   + + LI   +     DY++ +F
Sbjct: 169 DSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVF 228

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D+   ++  ++N L+ G A+N   +  +  F  ML+  VRP  +T+  +     +L+ L 
Sbjct: 229 DNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLR 288

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ LH  ++  G E + F+   L DMY + G+   A  +FD    K  S  V+ W  +I
Sbjct: 289 FGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFD----KMSSPDVVSWTAMI 344

Query: 207 NGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GV 261
            G +  G  R+A+ LF  M     K N  ++++++      G + K  + F+ M    G+
Sbjct: 345 MGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGI 404

Query: 262 VS----WTAMINGFSQNGEAEKALAMFFQM 287
           V     + A+ +   + GE ++A     +M
Sbjct: 405 VPTLEHFAALADTLGRAGELDEAYNFISKM 434



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 97/250 (38%), Gaps = 49/250 (19%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQM-LDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNY 321
           W   I   +  G    A+++F +M   A  R++   ++ +AL +CA +G    G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 322 -ISCNDFGLK------------------GAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
            I    F  +                   + G A+VD+       E+   VF E  E+D+
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL----- 417
           ++W  ++ G A  GR+ +A+ + +KM   G  PD      +L        VK  L     
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 418 ---NFFDS---------------MRFDY----FIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
              N FDS                R DY    F    V+ H +  +LL+   Q+    + 
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGS-VEE 254

Query: 456 SQNSFTKLLQ 465
           +   F ++LQ
Sbjct: 255 ALGIFRRMLQ 264


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/581 (33%), Positives = 307/581 (52%), Gaps = 76/581 (13%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P    Y  + +S  +   +  G+ LH  +  +G  +D  +   L ++Y        A  +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP-------------- 226
           FD  P+ N    + LWNVLI G +  G    AV+L+      G++P              
Sbjct: 133 FDRIPKHN----IFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAA 188

Query: 227 -------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
                              +K+V    +LID + + G +  A E+F+++  +  V W +M
Sbjct: 189 LSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSM 248

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           +  +SQNG  +  L++  +M+  G+R  + T+V+A+SA A   AL  G  +H      +F
Sbjct: 249 LAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEF 308

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                + TALVDMYAKCG++  A  +F     K +++W AMI G A+HG   +A+  F++
Sbjct: 309 ESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEE 368

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M     +PD   F+ +L+AC + G ++    FF++M  DY I+P+V+H+T +V+LL   G
Sbjct: 369 MNRVA-KPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSG 427

Query: 448 QDSQGYQ------------------NS----------QNSFTKLLQLKPKHPSSYVLLSN 479
           +  + Y                   NS          + +  +L++L+P    +YV+LSN
Sbjct: 428 RLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSN 487

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLED 537
           IYA  G+W+ VA++R LM  R +KK    S+IEV   VH F +G   H L+ EI+S+LE 
Sbjct: 488 IYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELER 547

Query: 538 IMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           +    +E GY P T  V H+++++++  + C HSE+LA+AFGLI T PGT + I K L I
Sbjct: 548 VGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRI 607

Query: 597 CGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           C DCH  +K+ SKI++REI +RD  R+H+FKDG CSC DYW
Sbjct: 608 CEDCHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 123/447 (27%), Positives = 207/447 (46%), Gaps = 55/447 (12%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETH--IISLIHSSNSTKQLR---QIHAQIILHNLF 60
           F+   T +    +  + H  S  +T T+    SL+ S  + K ++   Q+HAQ+ L    
Sbjct: 48  FDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFG 107

Query: 61  ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
             + I T+L++   +  S+  A  +FD     N+ ++NVLIRG A N  +++ +  +  M
Sbjct: 108 FDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM 167

Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
               + P+  T+PFV K+ A+LS +  GR +H  +V++G E D FV   L DMY + G  
Sbjct: 168 FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCV 227

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY------LRKAVELFGMMPKK------ 228
             A +VFD+   ++     +LWN ++   S+ G+      L   + L G+ P +      
Sbjct: 228 GSAREVFDKILVRD----AVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEATLVTA 283

Query: 229 ------NVA----------SW-----------VSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                 N A          SW            +L+D + + G ++ A  LFE++  K V
Sbjct: 284 ISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVKRV 343

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW AMI G++ +G A +AL +F +M +   + +  T V  LSAC+  G LE G      
Sbjct: 344 VSWNAMITGYAMHGHATEALDLFEEM-NRVAKPDHITFVGVLSACSHGGLLEEGWMFFET 402

Query: 322 ISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           +   D+ +   +   T +VD+    G + EA +L+       D   W A++    IH   
Sbjct: 403 M-IRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHANV 461

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILT 405
           E      ++++    EPD      IL+
Sbjct: 462 ELGEIALERLI--ELEPDDAGNYVILS 486


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 200/584 (34%), Positives = 313/584 (53%), Gaps = 76/584 (13%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           S+ P+R  Y  + K    L  L  G+ +H  ++ S  ++D  ++  L  MY + G   GA
Sbjct: 69  SLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGA 128

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK--------- 228
            ++FDE P ++    ++ W  +I G ++      A+ LF      G  P +         
Sbjct: 129 RRLFDEMPHRD----MVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKC 184

Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                   NV    SL+D + R G L +A  +F+++  K  VSW
Sbjct: 185 CGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSW 244

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A+I G+++ GE E+ALA+F +M   G R  +FT  + LS+C+ +G LE G  +H ++  
Sbjct: 245 NALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMK 304

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +   L G +G  L+ MYAK G+I  A  VF +  + D+++  +M+ G A HG  ++A Q 
Sbjct: 305 SSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQ 364

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M+  G EP+   FL++LTAC ++  +    ++F  MR  Y IEP V H+  +V+LL 
Sbjct: 365 FDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYFGLMR-KYNIEPKVSHYATIVDLLG 423

Query: 445 RVGQDSQG-------------------------YQNSQ---NSFTKLLQLKPKHPSSYVL 476
           R G   Q                          ++N++    +  ++ +L P +P ++ L
Sbjct: 424 RAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTL 483

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSK 534
           L+NIYA+ GRW+DVA+VR +M+   +KK+P  S++EV   VH F A    H   ++IH  
Sbjct: 484 LANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKM 543

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
            E +    +E GY+P T  VL  + ++EKE  L  HSEKLAL+F L+ T PG+TI+I+K 
Sbjct: 544 WEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKN 603

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + +CGDCHS +KY S + +REI++RDT RFH+F DG CSC DYW
Sbjct: 604 IRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 158/360 (43%), Gaps = 45/360 (12%)

Query: 150 GLHCL-IVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GLH L ++  G +E D  +   L     QLGK +    V       N    +++ N L+ 
Sbjct: 58  GLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLF 117

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
             ++ G L  A  LF  MP +++ SW S+I                              
Sbjct: 118 MYARCGSLEGARRLFDEMPHRDMVSWTSMI------------------------------ 147

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
             G++QN  A  AL +F +ML  G   N+FT+ S +  C  + +   G ++H    C  +
Sbjct: 148 -TGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIH--ACCWKY 204

Query: 328 GLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           G      +G++LVDMYA+CG +  A LVF +   K+ ++W A+I G A  G  E+A+  F
Sbjct: 205 GCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALF 264

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M   G  P    + A+L++C   G ++            + ++ S K    V N L  
Sbjct: 265 VRMQREGYRPTEFTYSALLSSCSSMGCLEQG-----KWLHAHLMKSSQKLVGYVGNTLLH 319

Query: 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           +   S   ++++  F KL+++     +S ++    YA  G  K+ A+    M R  I+ +
Sbjct: 320 MYAKSGSIRDAEKVFDKLVKVDVVSCNSMLI---GYAQHGLGKEAAQQFDEMIRFGIEPN 376



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/375 (22%), Positives = 156/375 (41%), Gaps = 44/375 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K+ + +H  ++  N      I   L+   +   S++ A  +FD    +++  +  +I G 
Sbjct: 91  KEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGY 150

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           A+N      +  F  ML     PN  T   + K    ++  + GR +H    K G   + 
Sbjct: 151 AQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNV 210

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV   L DMY + G    A  VFD+   KN+    + WN LI G ++ G   +A+ LF  
Sbjct: 211 FVGSSLVDMYARCGYLGEAMLVFDKLGCKNE----VSWNALIAGYARKGEGEEALALFVR 266

Query: 225 MPKKNV----------------------ASWV-----------------SLIDGFMRKGD 245
           M ++                          W+                 +L+  + + G 
Sbjct: 267 MQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGS 326

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           ++ A ++F+++ +  VVS  +M+ G++Q+G  ++A   F +M+  G+  ND T +S L+A
Sbjct: 327 IRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTA 386

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLT 364
           C+    L+ G      +   +   K +    +VD+  + G ++ A     E   E  +  
Sbjct: 387 CSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAI 446

Query: 365 WTAMIWGLAIHGRYE 379
           W A++    +H   E
Sbjct: 447 WGALLGASKMHKNTE 461



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 72/298 (24%), Positives = 121/298 (40%), Gaps = 36/298 (12%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           +R + A+     + S     N  T + ++       S    RQIHA    +   ++  + 
Sbjct: 154 DRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVG 213

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           + L+   +    +  A+ +FD    KN   +N LI G A     +  ++ FV M R   R
Sbjct: 214 SSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREGYR 273

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P   TY  +  S +S+  L  G+ LH  ++KS  +   +V   L  MY + G  R A KV
Sbjct: 274 PTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKV 333

Query: 187 FDETPEKN--KSESVLL-----------------------------WNVLINGCSKIGYL 215
           FD+  + +     S+L+                             +  ++  CS    L
Sbjct: 334 FDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLL 393

Query: 216 RKAVELFGMMPKKN----VASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMI 268
            +    FG+M K N    V+ + +++D   R G L +A    E+MP E  V  W A++
Sbjct: 394 DEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALL 451



 Score = 40.4 bits (93), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 82/193 (42%), Gaps = 5/193 (2%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           +  ++P+   T + ++S   S    +Q + +HA ++  +      +   L+   +   SI
Sbjct: 269 REGYRPTE-FTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGSI 327

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
             A  +FD     ++   N ++ G A++   +     F  M+R  + PN +T+  V  + 
Sbjct: 328 RDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTAC 387

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           +   LL  G+    L+ K  +E        + D+  + G    A    +E P +    +V
Sbjct: 388 SHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIE---PTV 444

Query: 200 LLWNVLINGCSKI 212
            +W  L+ G SK+
Sbjct: 445 AIWGALL-GASKM 456


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 195/584 (33%), Positives = 303/584 (51%), Gaps = 76/584 (13%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           + RP+  T+     + A L  L  G  +      +G + D FV   L  +Y + G    A
Sbjct: 103 AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226
            KVF   P +++    + W+ ++ G    G    A++++  M                  
Sbjct: 163 VKVFVRMPRRDR----VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                 + +V +  SL+D + + G L  A  +F  M  +  VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           +AMI+GF+QNG++++AL +F  M  +G++ +   +VSAL AC+ +G L+ G  VH +I  
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI-V 337

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             F     +GTA +DMY+KCG++ +A ++F    ++DL+ W AMI     HGR + A+  
Sbjct: 338 RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F++M  +G  PD   F ++L+A  +SG V+    +F  M   + I P+ KH+  +V+LL+
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLA 457

Query: 445 RVGQ----------------------------DSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
           R G                             +++  +  ++    +L+L+P       L
Sbjct: 458 RSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLAL 517

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG--HVHRFEAGGHKLAKEIHSK 534
           +SN+YAA  +W  V +VR LM+    KK PG S IE+ G  HV   E   H   +EI SK
Sbjct: 518 VSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSK 577

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           +  +    R+ GY+P TE+V H+++EE KE+ L  HSE+LA+AFGL+ T PGT + I+K 
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKN 637

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L +CGDCH  +KY SKI+ REIV+RD  RFH+FKDG CSCRDYW
Sbjct: 638 LRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 135/256 (52%), Gaps = 7/256 (2%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL----FGMMPKKNVASW 233
           G    A +VF   P   + +S   + + ++ C+++G LR    +    F    K +V   
Sbjct: 88  GSPASALRVFRALPPAARPDSTT-FTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            SL+  + R G +  A ++F +MP +  V+W+ M+ GF   G+   A+ M+ +M + GV+
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            ++  ++  + AC     +  G  VH ++  +   +     T+LVDMYAK G ++ A  V
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           FG    ++ ++W+AMI G A +G+ ++A++ F+ M  SG +PD    ++ L AC   G +
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 414 KL--ALNFFDSMRFDY 427
           KL  +++ F   RFD+
Sbjct: 327 KLGRSVHGFIVRRFDF 342



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 129/318 (40%), Gaps = 51/318 (16%)

Query: 31  ETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           E  +I +I +  + + +R    +H  ++ H +       T L+   + +  +D A  +F 
Sbjct: 209 EVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFG 268

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               +N   ++ +I G A+N      +  F  M    ++P+         + +++  L L
Sbjct: 269 LMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKL 328

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H  IV+   +++  +     DMY + G    A  +F+   +++    ++LWN +I 
Sbjct: 329 GRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD----LILWNAMIA 383

Query: 208 GCSKIGYLRKAVELF------GMMPKKNVAS----------------------------- 232
            C   G  + A+ LF      GM P     +                             
Sbjct: 384 CCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKIT 443

Query: 233 -----WVSLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                +V L+D   R G +++A +L   M  E  V  W A+++G   N + E   ++   
Sbjct: 444 PAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADN 503

Query: 287 MLDAGVRANDFTVVSALS 304
           +L+  ++ +D  V++ +S
Sbjct: 504 ILE--LQPDDVGVLALVS 519


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 201/676 (29%), Positives = 339/676 (50%), Gaps = 76/676 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           T+++ L   +   ++ R+IH  +I +   ++    T +++  +  + I+ A  +F+    
Sbjct: 146 TYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQ 205

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           ++L  +N ++ G A+N   +  +   + M     +P+ +T   V  +VA L  L +GR +
Sbjct: 206 RDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSI 265

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--- 208
           H    ++G EY   V   + D Y + G  R A  VF     +N    V+ WN +I+G   
Sbjct: 266 HGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRN----VVSWNTMIDGYAQ 321

Query: 209 --------------------------------CSKIGYLRKAVELFGMMPKK----NVAS 232
                                           C+ +G L +   +  ++ +K    +V+ 
Sbjct: 322 NGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSV 381

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             SLI  + +   +  A  +F  +  K VV+W AMI G++QNG   +AL +F +M    +
Sbjct: 382 MNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDI 441

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + + FT+VS ++A A +        +H             + TAL+D +AKCG I+ A  
Sbjct: 442 KPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARK 501

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F   +E+ ++TW AMI G   +G   +A+  F +M     +P+   FL+++ AC +SG 
Sbjct: 502 LFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGL 561

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------- 462
           V+  + +F+SM+ +Y +EP++ H+  +V+LL R G+    ++  Q+   K          
Sbjct: 562 VEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAML 621

Query: 463 ------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                             L  L P     +VLL+N+YA+   W  VARVRT M+++ I+K
Sbjct: 622 GACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQK 681

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE- 561
            PG S +E+   VH F +G   H  +K I++ LE +    +  GY+P T  + H+++E+ 
Sbjct: 682 TPGCSLVELRNEVHTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSI-HDVEEDV 740

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE+ L  HSE+LA+AFGL+ T  GT I I K L +CGDCH   KY S ++ REI++RD  
Sbjct: 741 KEQLLSSHSERLAIAFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLR 800

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FK+G CSC DYW
Sbjct: 801 RFHHFKNGICSCGDYW 816



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 201/411 (48%), Gaps = 47/411 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           L+    S K+L QI   II +  +      T+LIS      SI  A  +F+    K   +
Sbjct: 50  LLELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVL 109

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           ++ +++G A+NS  +  +  +  M    V P    + ++ +       L  GR +H +++
Sbjct: 110 YHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVI 169

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
            +G + + F    + ++Y +  +   A+K+F+  P+++    ++ WN ++ G ++ G+ R
Sbjct: 170 TNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRD----LVSWNTVVAGYAQNGFAR 225

Query: 217 KAVELF------GMMPKK-----------------------------------NVASWVS 235
           +AV++       G  P                                     NVA+  +
Sbjct: 226 RAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVAT--A 283

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           ++D + + G ++ A  +F+ M  + VVSW  MI+G++QNGE+E+A A F +MLD GV   
Sbjct: 284 MLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPT 343

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           + +++ AL ACA +G LE G  VH  +     G   ++  +L+ MY+KC  ++ A+ VFG
Sbjct: 344 NVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFG 403

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
             K K ++TW AMI G A +G   +A+  F +M     +PD    ++++TA
Sbjct: 404 NLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 211/714 (29%), Positives = 357/714 (50%), Gaps = 105/714 (14%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H P   +   H+++    +    + R++   +   NLF  + + + L + A L   ++  
Sbjct: 37  HPPPTYLL-NHLLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTL-AHARLLSDME-- 92

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVA 140
            ++F   T +++  +N +I G +        +  ++ +L+   SVRP+R+T   +  + +
Sbjct: 93  -ALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAAS 151

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
           +L   +LG+  HC I++ G   +AFV   L DMY ++     A + FDE   KN      
Sbjct: 152 ALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNT 211

Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMP------- 226
                                     + W  ++ G ++ G   +A+E+F  M        
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAID 271

Query: 227 --------------------------------KKNVASWVSLIDGFMRKGDLKKAGELFE 254
                                             NV    +L+D + +   +K A  +F 
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           +M  K ++SWTA+I G+ QNG +E+A+ +F +M   G+  +D+T+ S +S+CA + +LE 
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEE 391

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G + H     +       +  ALV +Y KCG+IE A  +F E    D ++WTA++ G A 
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQ 451

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
            GR ++ I  F+KM+  G +PDG  F+ +L+AC  +G V+   ++F SM+ D+ I P   
Sbjct: 452 FGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDD 511

Query: 435 HHTVVVNLLSRVGQ---------------DSQGY-------------QNSQNSFTKLLQL 466
           H+T +++L SR G+               D+ G+             +  + +   LL++
Sbjct: 512 HYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEI 571

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
            P++P+SYVLL +++AA+G+W +VA++R  M+ R +KK+PG S+I+    VH F A    
Sbjct: 572 DPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQS 631

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTT 583
           H  +K I+ KLE + +   E+GY P    VLH++ + +K   +  HSEKLA+AFGLI   
Sbjct: 632 HPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVP 691

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
               I+IVK L +C DCH+  K+ SKI+ R+I++RD  RFH F DG CSC D+W
Sbjct: 692 QEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 98/433 (22%), Positives = 180/433 (41%), Gaps = 81/433 (18%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQL-RQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           SS +PS     T +++   S+   + L +Q H QI+     A++ + + L+   +    +
Sbjct: 134 SSVRPSRITMSTMVMAA--SALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLV 191

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGL-------------------------------AENS 108
             A   FD    KN+ ++N +I GL                                +N 
Sbjct: 192 GDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNG 251

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                +  F  M    +  ++ T+  +  +  +LS L  G+ +H  I+++  + + FV  
Sbjct: 252 LESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGS 311

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L DMY +    + A  VF     KN    ++ W  LI G  + G   +AV +F  M + 
Sbjct: 312 ALVDMYSKCRSIKLAETVFRRMTCKN----IISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 229 -----------------NVASW--------VSLIDGFM--------------RKGDLKKA 249
                            N+AS         ++L+ G M              + G ++ A
Sbjct: 368 GIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             LF++M     VSWTA+++G++Q G A++ + +F +ML  GV+ +  T +  LSAC++ 
Sbjct: 428 HRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRA 487

Query: 310 GALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWT 366
           G +E G R + +    D G+       T ++D+Y++ G + EA   +       D + W 
Sbjct: 488 GFVEKG-RSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWG 546

Query: 367 AMIWGLAIHGRYE 379
            ++    + G  E
Sbjct: 547 TLLSACRLRGDME 559



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 166/417 (39%), Gaps = 86/417 (20%)

Query: 130 LTYPFVSKSVASLSLLS-----LGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGA 183
           ++ P  S+  A LS  +     +   LHC+I+++       ++  HL   Y + G+   A
Sbjct: 1   MSRPLSSQYAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHARA 60

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
            +VFD  P  N    +  +N L++  +    L     LF  M ++++             
Sbjct: 61  RRVFDAMPHPN----LFTYNALLSTLAHARLLSDMEALFASMTQRDI------------- 103

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVS 301
                             VS+ A+I GFS  G   +A+ ++  +L  D+ VR +  T+ +
Sbjct: 104 ------------------VSYNAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMST 145

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK------------------ 343
            + A + +G    G + H  I    FG    +G+ LVDMYAK                  
Sbjct: 146 MVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKN 205

Query: 344 -------------CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
                        C  +E A  +F    ++D +TWT M+ G   +G   +A++ F++M +
Sbjct: 206 VVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRF 265

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR--FDYFIEPSVKHHTVVVNLLSRVGQ 448
            G   D   F +ILTAC        AL+  +  +    Y I      +  V + L  +  
Sbjct: 266 QGIAIDQYTFGSILTACG-------ALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYS 318

Query: 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
             +  + ++  F +   +  K+  S+  L   Y   G  ++  RV + MQR  I  D
Sbjct: 319 KCRSIKLAETVFRR---MTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPD 372


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 210/630 (33%), Positives = 326/630 (51%), Gaps = 81/630 (12%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
           D A  +FD     +  ++N L+ GL  +   ++    FV M+    VRP+  T     ++
Sbjct: 166 DDARKVFDTVPSPDTILWNTLLAGLPGSEALEA----FVRMVDAGRVRPDSTTLASSLRA 221

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A  S +++GR +H   VK G+     V   L  +Y + G    A  +FD    +  +  
Sbjct: 222 AAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFD----RMDNPD 277

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGF-------------- 240
           ++ +N LI+G S  G +  +VELF  +     + N ++ V++I  +              
Sbjct: 278 LVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHA 337

Query: 241 ---------------------MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                                 R  D++ A  +F+ M EK + SW AMI+G++QNG  E 
Sbjct: 338 FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEM 397

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A+A+F  M +  V+ N  T+ S LSACA +GAL  G  VH  IS     L   + TAL+D
Sbjct: 398 AVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALID 457

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAKCG+I  A  +F     K++++W AMI G  +HG+  +A++ +K M+ +   P  + 
Sbjct: 458 MYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSST 517

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------- 452
           FL+++ AC + G V      F  M  +Y I P ++H T +V+LL R G+ ++        
Sbjct: 518 FLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRAGKLNEALELISEF 577

Query: 453 -------------------YQNS---QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                              ++NS   + +  KL +L  ++   YVLLSN+Y ++  + + 
Sbjct: 578 PQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVLLSNLYTSKKHYSEA 637

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGH--KLAKEIHSKLEDIMAGAREQGYM 548
           A VR   + R + K PG + IE+    H F AG H    ++ I+S LE + A   E GY 
Sbjct: 638 AVVRQEAKTRKLVKTPGCTLIEIGDRPHVFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQ 697

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P TE  L++++EE KE  +  HSEKLA+AFGL+ T PGT I+I+K L +C DCH+  K+ 
Sbjct: 698 PVTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIRIIKNLRVCLDCHNATKFI 757

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           SK++QR IV+RD +RFH+F+DG CSC DYW
Sbjct: 758 SKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 168/397 (42%), Gaps = 48/397 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H   +   L     + T L+S  S    +D A  +FD     +L  +N LI G + N
Sbjct: 232 RCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVN 291

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +S +  F  +     RPN  T   V    +      L R LH  +VK+ ++ DA V 
Sbjct: 292 GMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVS 351

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  +Y +L     A  +FD   EK        WN +I+G ++ G    AV LF +M +
Sbjct: 352 TALTTLYCRLNDMESARSIFDAMLEKTMES----WNAMISGYAQNGLTEMAVALFQLMQE 407

Query: 228 KNV----------------------ASWV-----------------SLIDGFMRKGDLKK 248
            NV                        WV                 +LID + + G + +
Sbjct: 408 LNVQPNPITISSTLSACAHLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAE 467

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +F++M  K VVSW AMI+G+  +G+  +AL ++  MLDA +     T +S + AC+ 
Sbjct: 468 ARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSH 527

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDL--LT 364
            G ++ G +V   ++ N++ +   I   T +VD+  + G +  A  +  E  +  +    
Sbjct: 528 GGLVDEGQKVFRVMT-NEYRITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGV 586

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           W A++    +H   + A    +K+    +E  G   L
Sbjct: 587 WGALLGACMVHKNSDLAKLASQKLFELDSENAGYYVL 623



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 181/424 (42%), Gaps = 58/424 (13%)

Query: 35  ISLIHSSNSTKQLRQIHAQIIL--HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           + L+  S++ + L Q+ A  +   H     +  T  L+  ASL     + L +F  F   
Sbjct: 24  LRLVALSSTPRHLDQLLAVSLASGHYALDPAPATALLLRYASLRAPPSHLLRLFRAFPCP 83

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL-----SL 147
           +  + N L+R L       S   H +F       P+  ++ F + S++S         + 
Sbjct: 84  DRFLRNALLRSL------PSLRPHLLF-----PSPDSFSFAFAATSLSSSCSSRGNDAAA 132

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
            R LH L V +G   D FV   LA +Y +L +   A KVFD  P    S   +LWN L+ 
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVP----SPDTILWNTLLA 188

Query: 208 G-----------------------CSKIGYLRKAVE---------LFGMMPKKNVASWVS 235
           G                        +    LR A E         + G   K  +A    
Sbjct: 189 GLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEH 248

Query: 236 LIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           ++ G M    + GD+  A  LF++M    +V++ A+I+G+S NG  E ++ +F ++  +G
Sbjct: 249 VVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASG 308

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
            R N  T+V+ +   +  G       +H ++          + TAL  +Y +  ++E+A 
Sbjct: 309 WRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESAR 368

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            +F    EK + +W AMI G A +G  E A+  F+ M     +P+     + L+AC + G
Sbjct: 369 SIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLG 428

Query: 412 QVKL 415
            + L
Sbjct: 429 ALSL 432



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 135/279 (48%), Gaps = 17/279 (6%)

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           VAS ++ +   + +GD   A ++F+ +P    + W  ++ G        +AL  F +M+D
Sbjct: 151 VASALAKLYFKLSRGD--DARKVFDTVPSPDTILWNTLLAGLP----GSEALEAFVRMVD 204

Query: 290 AG-VRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNI 347
           AG VR +  T+ S+L A A+   +  G  VH Y + C        + T L+ +Y+KCG++
Sbjct: 205 AGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCG-LAEHEHVVTGLMSLYSKCGDM 263

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++A  +F      DL+ + A+I G +++G  E +++ FK++  SG  P+ +  +A++   
Sbjct: 264 DSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVY 323

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
              G   LA          + ++  +    +V   L+ +       +++++ F  +L+  
Sbjct: 324 SPFGHELLARCL-----HAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLE-- 376

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
            K   S+  + + YA  G  +    +  LMQ  +++ +P
Sbjct: 377 -KTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNP 414


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 189/576 (32%), Positives = 302/576 (52%), Gaps = 63/576 (10%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           NL  +N ++ G   N  +   +  F  ML     P+  T   V  +V  L  + +G  +H
Sbjct: 204 NLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVH 263

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G+  D FV   + DMY + G  +   +VFDE  E          N  + G S+ 
Sbjct: 264 GYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGS----LNAFLTGLSRN 319

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G +  A+E+F                            +  +Q  E  VV+WT++I   S
Sbjct: 320 GMVDTALEVFN---------------------------KFKDQKMELNVVTWTSIIASCS 352

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG+  +AL +F  M   GV  N  T+ S + AC  + AL  G  +H +           
Sbjct: 353 QNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVY 412

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G+AL+DMYAKCG I+ A   F +    +L++W A++ G A+HG+ ++ ++ F  M+ SG
Sbjct: 413 VGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSG 472

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +PD   F  +L+AC  +G  +     ++SM  ++ IEP ++H+  +V LLSRVG+  + 
Sbjct: 473 QKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEA 532

Query: 453 YQ---------------------NSQNSFT-------KLLQLKPKHPSSYVLLSNIYAAE 484
           Y                         N+ +       KL  L+P +P +Y+LLSNIYA++
Sbjct: 533 YSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASK 592

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGA 542
           G W +  R+R +M+ + ++K+PG+S+IEV   VH   AG   H   K+I  KL+ +    
Sbjct: 593 GLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQM 652

Query: 543 REQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           ++ GY+P T +VL +++E+ +E + C HSEKLA+  GL+ T+PG  ++++K L IC DCH
Sbjct: 653 KKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCH 712

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +++K  S++  REI +RDT RFH+FKDG CSC D+W
Sbjct: 713 AVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 119/399 (29%), Positives = 192/399 (48%), Gaps = 35/399 (8%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS---SASLHKSIDYALSIFDHFTPKN 93
           L  S+ S  Q RQ HA I+  NLF+ +++TT L+S   +A    +   +L++  H     
Sbjct: 9   LSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPT 68

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           L  F+ LI   A + HF   ++ F  +  L + P+    P   KS ASL  L  G+ LH 
Sbjct: 69  LFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPGQQLHA 128

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
               SG   D+ V   L  MY++  +   A K+FD  P+++    V++W+ +I G S++G
Sbjct: 129 FAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRD----VVVWSAMIAGYSRLG 184

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
            + +A ELFG                 MR G +           E  +VSW  M+ GF  
Sbjct: 185 LVEEAKELFGE----------------MRSGGV-----------EPNLVSWNGMLAGFGN 217

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           NG  ++A+ MF  ML  G   +  TV   L A   +  +  G +VH Y+     G    +
Sbjct: 218 NGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFV 277

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
            +A++DMY KCG ++  S VF E +E ++ +  A + GL+ +G  + A++ F K      
Sbjct: 278 VSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKM 337

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           E +   + +I+ +C  +G+   AL  F  M+  Y +EP+
Sbjct: 338 ELNVVTWTSIIASCSQNGKDLEALELFRDMQ-AYGVEPN 375



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 118/258 (45%), Gaps = 30/258 (11%)

Query: 79  IDYALSIFDHFTPKNLHI----FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
           +D AL +F+ F  + + +    +  +I   ++N      +  F  M    V PN +T P 
Sbjct: 322 VDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPS 381

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +  +  ++S L  G+ +HC  ++ G+  D +V   L DMY + G+ + A + FD+    N
Sbjct: 382 LIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALN 441

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAG 250
               ++ WN ++ G +  G  ++ +E+F MM     K ++ ++  ++    + G  ++  
Sbjct: 442 ----LVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGW 497

Query: 251 ELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             +  M E+  +      +  ++   S+ G+ E+A ++  +M         F       A
Sbjct: 498 RCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEM--------PFEP----DA 545

Query: 306 CAKVGALEAGVRVHNYIS 323
           C   GAL +  RVHN +S
Sbjct: 546 CV-WGALLSSCRVHNNLS 562



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 48/239 (20%), Positives = 99/239 (41%), Gaps = 7/239 (2%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T   +I    + ++    ++IH   +   +F    + + LI   +    I  A   F
Sbjct: 375 NAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFDDVYVGSALIDMYAKCGRIQLARRCF 434

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D  +  NL  +N +++G A +   +  +  F  ML+   +P+ +T+  V  + A   L  
Sbjct: 435 DKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTE 494

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G R  + +  + G+E        L  +  ++GK   A+ +  E P +  +    +W  L
Sbjct: 495 EGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKEMPFEPDA---CVWGAL 551

Query: 206 INGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           ++ C   + +     A E    +   N  +++ L + +  KG   +   + E M  KG+
Sbjct: 552 LSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEENRIREVMKSKGL 610


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 191/525 (36%), Positives = 293/525 (55%), Gaps = 39/525 (7%)

Query: 147 LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQL--GKTRGAFKVFDETPEKNKSESVLLWN 203
           LG  LH   ++SG    D FVR  L +MY +   G+   A   FDE P ++    V L N
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRD----VFLCN 120

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
           V++      G + +A ++F  M  +++ SW ++I G+  +GD+  A E+F+   ++   S
Sbjct: 121 VMLAAYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFS 180

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W++MI+ +++   +++AL ++ +M  AGV  +  ++VS LSAC+ +GAL  G  VH ++ 
Sbjct: 181 WSSMISAYAKGRCSKEALELWREMRVAGVAPDCISMVSVLSACSAMGALAIGAEVHRFVE 240

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            N   +   +GTALVDMYAKCG+IE +  VF     KD+LTW++MI GLA HG    A+ 
Sbjct: 241 SNRVEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALS 300

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            F +M+  G +P+   F+ +L AC + G V     +F SM   + + P ++H+  +V+LL
Sbjct: 301 LFSEMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLL 360

Query: 444 SRVGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSYV 475
            R G   +                          ++N   ++ +  KL  L P     YV
Sbjct: 361 GRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYV 420

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHS 533
           LLSNIYA    W+ VA +R  ++R +I++ PG S IE    VH F +G   H   +EI+ 
Sbjct: 421 LLSNIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYK 480

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
            LE++M   R+ GY P T  VL +I E+ K+ AL  HSEKLA+AFGL+ T   +T++I K
Sbjct: 481 MLEEMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITK 540

Query: 593 KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L  C DCHS +K  S    R++++RD  RFH+F +G CSC+DYW
Sbjct: 541 NLRACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 13/228 (5%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +I   ++   +  A  IFD    ++   ++ +I   A+    +  +  +  M    V P+
Sbjct: 153 MIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAGVAPD 212

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            ++   V  + +++  L++G  +H  +  + VE D  +   L DMY + G    + KVF 
Sbjct: 213 CISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSLKVFH 272

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKG 244
             P K+    VL W+ +I G +  G    A+ LF  M  +    N  +++ ++      G
Sbjct: 273 AMPVKD----VLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVG 328

Query: 245 DLKKAGELFEQMPE-KGVVS----WTAMINGFSQNGEAEKALAMFFQM 287
            +    + F  M +  GVV     +  M++   + G  E+A+ +   M
Sbjct: 329 LVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSM 376


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 205/680 (30%), Positives = 341/680 (50%), Gaps = 76/680 (11%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           +T   I++   S+ S K   +IH QI+         + T LI+  +   S+  A   F  
Sbjct: 107 VTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKR 166

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              +++  +  +I    ++  F      +  M    V PN++T   V  +      LS G
Sbjct: 167 LEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEG 226

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + ++ L+    +E D  V     +M+   G    A ++F++  +++    V+ WN++I  
Sbjct: 227 KFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRD----VVTWNIVITF 282

Query: 209 CSKIGYLRKAVELFGMMPKKNV--------------ASWVSLIDGFMRKGDLKKAG---- 250
             +     +AV LFG + +  +               S  SL  G +    +K+AG    
Sbjct: 283 YVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRD 342

Query: 251 ---------------------ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                                ++F  M  K V++WT M   ++QNG  ++AL +F +M  
Sbjct: 343 VVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQL 402

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G R    T+V+ L  CA + AL+ G ++H++I  N F ++  + TAL++MY KCG +  
Sbjct: 403 EGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAE 462

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  VF +  ++D+L W +M+   A HG Y++ +Q F +M   G + D   F+++L+A  +
Sbjct: 463 ARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSH 522

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------- 454
           SG V     +F +M  D+ I P+ + +  VV+LL R G+  +                  
Sbjct: 523 SGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILW 582

Query: 455 --------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                          ++ +  ++L+  P H  +YV+LSN+YAA G W  V R+R LM+ R
Sbjct: 583 MTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGVNRMRKLMRSR 642

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +KK+PG S IE+   VH F  G   H     I+++L+ + +  R  GY+P T+ +LH++
Sbjct: 643 GVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYIPDTKMILHDV 702

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           ++E KE+ L  HSE+LA+AFGL+ T PGT ++++K L +C DCH+  KY SK+  REI++
Sbjct: 703 EDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYISKLRGREILV 762

Query: 618 RDT-RFHYFKDGTCSCRDYW 636
           RDT RFH FKDG CSC+DYW
Sbjct: 763 RDTHRFHNFKDGRCSCKDYW 782



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 178/415 (42%), Gaps = 46/415 (11%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           ++L+   +S K +   R++H  +       ++ +   LI   +   S+  A  +F+    
Sbjct: 9   VALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILER 68

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K++  +  +I    +   +   +  F  M    V P ++TY  +  + AS   L  G  +
Sbjct: 69  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 128

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I++ G E D FV   L +MY + G  RGA+  F     ++    V+ W  +I  C +
Sbjct: 129 HGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRD----VVSWTAMIAACVQ 184

Query: 212 ------IGYLRKAVELFGMMPKK---------------------------------NVAS 232
                   +L + ++L G++P K                                 +V  
Sbjct: 185 HDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRVMESDVRV 244

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             S ++ F   G L  A  LFE M ++ VV+W  +I  + QN    +A+ +F ++   G+
Sbjct: 245 MNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGI 304

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           +AND T V  L+    + +L  G  +H  +    +     + TAL+ +Y +C     A  
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWK 364

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +F +   KD++TWT M    A +G  ++A+Q F++M   G  P     +A+L  C
Sbjct: 365 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 419



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 65/290 (22%), Positives = 124/290 (42%), Gaps = 15/290 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N+IT   ++++  S  S  + + IH  +          + T L+S     ++   A  I
Sbjct: 306 ANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKI 365

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     K++  + V+    A+N   +  +  F  M     RP   T   V  + A L+ L
Sbjct: 366 FVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAAL 425

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             GR +H  I+++G   +  V   L +MY + GK   A  VF    EK     +L+WN +
Sbjct: 426 QKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVF----EKMAKRDILVWNSM 481

Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   ++ GY  + ++LF  M     K +  S+VS++      G +    + F  M +   
Sbjct: 482 LGAYAQHGYYDETLQLFNQMQLDGEKADAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFS 541

Query: 262 VSWTAMING-----FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           ++ T  + G       + G  ++A+ +  ++  +G   +    ++ L AC
Sbjct: 542 ITPTPELYGCVVDLLGRAGRIQEAVDIVLKL--SGCLPDGILWMTLLGAC 589



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 5/164 (3%)

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           V+ L  C+    ++ G RVH ++    F     +   L+ MYA+CG++  A  VF   + 
Sbjct: 9   VALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILER 68

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           KD+  WT MI      G Y++A+  F +M      P    ++AIL AC  +  +K  +  
Sbjct: 69  KDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACASTESLKDGMEI 128

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
              +    F E  V   T ++N+ ++ G      + + +SF +L
Sbjct: 129 HGQILQQGF-EGDVFVGTALINMYNKCG----SVRGAWDSFKRL 167


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 198/630 (31%), Positives = 338/630 (53%), Gaps = 79/630 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    +N   + ++I  L +  +    I  F+ M+     P+R T   V  + A+
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACAN 283

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
           + LL LG+ LH   ++ G+  D  V   L +MY +    G    A K+FD+  + N    
Sbjct: 284 MELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN---- 339

Query: 199 VLLWNVLING-CSKIGYLRKAVELF-GMM-----PK-----------KNVASWV------ 234
           V  W  +I G   K GY  +A++LF GM+     P             N+A+        
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 235 ----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                           SLI  + R G +  A + F+ + EK ++S+  +I+ +++N  +E
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +AL +F ++ D G+ A+ FT  S LS  A +G +  G ++H  +  +   L  ++  AL+
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALI 519

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CGNIE+A  VF + +++++++WT++I G A HG   QA++ F KM+  G  P+  
Sbjct: 520 SMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLV 579

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--NS 456
            ++A+L+AC + G V      F SM  ++ + P ++H+  +V++L R G  S+  Q  NS
Sbjct: 580 TYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINS 639

Query: 457 --------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +++   +++ +P  P++Y+LLSN+YA+  +W +V
Sbjct: 640 MPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEV 699

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
           + +R  M+ +++ K+ G S++EV   VH+F  G   H  A EI+ +L+++    ++ GY+
Sbjct: 700 SNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYV 759

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P  ++VLH+++EE KE+ L  HSEK+A+AFGLI T+    I++ K L ICGDCHS +KY 
Sbjct: 760 PNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYI 819

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           S  + REI++RD  RFH+ KDG CSC +YW
Sbjct: 820 SMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 182/410 (44%), Gaps = 50/410 (12%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAENS 108
           +H ++   +L   S     LIS  S     + A SIF    + ++L  ++ ++   A N+
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNN 147

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVR 167
                +  FV M+     PN   +   +++ ++   +S+G  +   +VK+G ++ D  V 
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVG 207

Query: 168 VHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
             L DM+V+  G    AFKVF++ PE+N     + W ++I    + GY  +A++LF    
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPERN----AVTWTLMITRLMQFGYAGEAIDLFLEMI 263

Query: 223 --GMMPKKNVASWV---------------------------------SLIDGFMR---KG 244
             G  P +   S V                                  LI+ + +    G
Sbjct: 264 LSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQ-NGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
            +  A ++F+Q+ +  V SWTAMI G+ Q  G  E+AL +F  M+   V  N FT  S L
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA + AL  G +V  +     F     +  +L+ MYA+ G I+ A   F    EK+L+
Sbjct: 384 KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLI 443

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           ++  +I   A +   E+A++ F ++   G       F ++L+     G +
Sbjct: 444 SYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 48/346 (13%)

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           N      IS    M+     P+  TY    K         +G  +H  + +S ++ D+  
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-------------------- 206
              L  +Y + G+   A  +F        S  ++ W+ ++                    
Sbjct: 104 LNSLISLYSKCGQWEKATSIFQLM---GSSRDLISWSAMVSCFANNNMGFRALLTFVDMI 160

Query: 207 -NG--------------CSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMR-KGD 245
            NG              CS   ++     +FG + K      +V     LID F++ +GD
Sbjct: 161 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGD 220

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           L  A ++FE+MPE+  V+WT MI    Q G A +A+ +F +M+ +G   + FT+   +SA
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA 280

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC---GNIEAASLVFGETKEKDL 362
           CA +  L  G ++H+    +   L   +G  L++MYAKC   G++ AA  +F +  + ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 363 LTWTAMIWGLAIHGRY-EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +WTAMI G    G Y E+A+  F+ M+ +   P+   F + L AC
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 138/315 (43%), Gaps = 17/315 (5%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   LIS  +    ID A   FD    KNL  +N +I   A+N + +  +  F  +    
Sbjct: 413 VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG 472

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  +  T+  +    AS+  +  G  +H  ++KSG++ +  V   L  MY + G    AF
Sbjct: 473 MGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAF 532

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGF 240
           +VF++  ++N    V+ W  +I G +K G+  +A+ELF  M     + N+ ++++++   
Sbjct: 533 QVFEDMEDRN----VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSAC 588

Query: 241 MRKGDLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
              G + +  + F+ M  E GV+     +  M++   ++G   +A+     M     +A+
Sbjct: 589 SHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSM---PYKAD 645

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
                + L AC   G LE G      I   +     A    L ++YA     +  S +  
Sbjct: 646 ALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAY-ILLSNLYASTSKWDEVSNIRK 704

Query: 356 ETKEKDLLTWTAMIW 370
             KEK+L+      W
Sbjct: 705 AMKEKNLIKEAGCSW 719



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 12/231 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            QIHA++I   L  +  +   LIS  S   +I+ A  +F+    +N+  +  +I G A++
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKH 556

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFV 166
                 +  F  ML   VRPN +TY  V  + + + L++ G +    +  + GV      
Sbjct: 557 GFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEH 616

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL---RKAVELFG 223
              + D+  + G    A +  +  P K  +   L+W   +  C   G L   + A ++  
Sbjct: 617 YACMVDILGRSGSLSEAIQFINSMPYKADA---LVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMIN 269
                + A+++ L + +       +   + + M EK ++     SW  + N
Sbjct: 674 EQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVEN 724


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 212/663 (31%), Positives = 343/663 (51%), Gaps = 80/663 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R+IH  +          +   LI   S    +  A S+FD    +++  +N +I GL +N
Sbjct: 192 RKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQN 251

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            +    +     M    +  + +T   +    A L  +S    +H  ++K G+E++ FV 
Sbjct: 252 GNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVS 311

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-------NGCSKIGYLRKAVE 220
             L +MY + G    A KVF +   ++    V+ WN +I       +  +  G+  K ++
Sbjct: 312 NALINMYAKFGNLGDAQKVFQQMFLRD----VVSWNSIIAAYEQNDDPVTARGFFFK-MQ 366

Query: 221 LFGMMPK-----------------KNVAS---------WV--------SLIDGFMRKGDL 246
           L G+ P                  KN  S         W+        +++D + + G +
Sbjct: 367 LNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVI 426

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSA 305
             A ++F  +P K VVSW  +I+G++QNG A +A+ ++  M +   ++ N  T VS L+A
Sbjct: 427 DSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAA 486

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            A VGAL+ G+R+H ++   +  L   +GT L+D+Y KCG +  A  +F +   +  + W
Sbjct: 487 YAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPW 546

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            A+I    IHG  E+A++ F++M   G +PD   F+++L+AC +SG V     FF  M+ 
Sbjct: 547 NAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQ- 605

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------------------- 458
           +Y I+PS+KH+  +V+LL R G     Y   ++                           
Sbjct: 606 EYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGK 665

Query: 459 -SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  +L ++  ++   YVLLSNIYA  G+W+ V +VR+L + R +KK PGWS IEVN  V
Sbjct: 666 FASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRV 725

Query: 518 HRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLA 574
             F  G   H   KEI+++L  + A  +  GY+P   +VL +++E EKE  L  HSE+LA
Sbjct: 726 DIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLA 785

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCR 633
           +AFG+I T P + I+I K L +CGDCH+  K+ S+I++REIV+RD+ RFH+FK+G CSC 
Sbjct: 786 IAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCG 845

Query: 634 DYW 636
           DYW
Sbjct: 846 DYW 848



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 188/406 (46%), Gaps = 49/406 (12%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P+ N  E    SL  S   T   +++HA +++     S+ I+ +L++  +    +  + 
Sbjct: 70  QPAKN-EEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSR 128

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASL 142
             FD    K+++ +N +I     N HF+  I  F  +L ++  + +  T+P V K+  + 
Sbjct: 129 GTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT- 187

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             L  GR +HC + K G ++D FV   L  MY + G    A  +FD+ P ++       W
Sbjct: 188 --LVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGS----W 241

Query: 203 NVLINGCSKIGYLRKAVELFGM-------MPKKNVASWV--------------------- 234
           N +I+G  + G   +A+++          M    VAS +                     
Sbjct: 242 NAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIK 301

Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                      +LI+ + + G+L  A ++F+QM  + VVSW ++I  + QN +   A   
Sbjct: 302 HGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGF 361

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYA 342
           FF+M   G+  +  T+VS  S  A+    +    VH +I    + ++   IG A++DMYA
Sbjct: 362 FFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYA 421

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           K G I++A  VF     KD+++W  +I G   +G   +AI+ ++ M
Sbjct: 422 KLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMM 467



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/432 (25%), Positives = 190/432 (43%), Gaps = 59/432 (13%)

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L + LH L+V SG     F+ + L ++Y  LG    +   FD+   K+    V  WN +I
Sbjct: 91  LAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKD----VYTWNSMI 146

Query: 207 NGCSKIGYLRKAVELF------------------------GMMPKKNVASWV-------- 234
           +   + G+ R+A++ F                         ++  + +  WV        
Sbjct: 147 SAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWD 206

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                SLI  + R G +  A  LF+ MP + + SW AMI+G  QNG A +AL +  +M  
Sbjct: 207 VFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 266

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G+  +  TV S L  CA++G +     +H Y+  +    +  +  AL++MYAK GN+  
Sbjct: 267 EGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGD 326

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  VF +   +D+++W ++I     +     A  +F KM  +G EPD    +++ +    
Sbjct: 327 AQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQ 386

Query: 410 SGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
           S   K + +     MR  + +E  V  +  V+++ +++G          +S  K+  L P
Sbjct: 387 SRDYKNSRSVHGFIMRRGWLMEAVVIGNA-VMDMYAKLG--------VIDSAHKVFNLIP 437

Query: 469 -KHPSSYVLLSNIYAAEGRWKDVARVRTLMQR-RSIKKDPG-W-SYIEVNGHVHRFEAG- 523
            K   S+  L + Y   G   +   V  +M+  R IK + G W S +    HV   + G 
Sbjct: 438 VKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGM 497

Query: 524 ---GHKLAKEIH 532
              GH +   +H
Sbjct: 498 RIHGHLIKTNLH 509


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 206/638 (32%), Positives = 315/638 (49%), Gaps = 88/638 (13%)

Query: 82  ALSIFDHFTPK--NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           A  +F   TP   ++  +N ++  L ++  F   +     M+ L VRP+ +T+     + 
Sbjct: 224 AQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPAC 283

Query: 140 ASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYV---QLGKTRGAFKVFDETPEKNK 195
           + L LL +GR +H  ++K   +  ++FV   L DMY    Q+GK R   +VFD  P+  K
Sbjct: 284 SRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR---QVFDMVPDSGK 340

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF-------GMMP--------------------KK 228
              + +WN +I G ++ G   +A+ LF       G +P                    K+
Sbjct: 341 Q--LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKE 398

Query: 229 NVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
            V  +V             +L+D + R G    A  +F  +    VVSW  +I G    G
Sbjct: 399 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 458

Query: 276 EAEKALAM---FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
               A  +     Q+ + GV  N  T+++ L  CA + A   G  +H Y   +      A
Sbjct: 459 HVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA 518

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G+ALVDMYAKCG +  +  VF     ++ +TW  +I    +HG   +A   F +M  SG
Sbjct: 519 VGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASG 578

Query: 393 -TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
              P+   F+A L AC +SG V   L  F +M  D+ +EP+      VV++L R G+  +
Sbjct: 579 EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDE 638

Query: 452 GY---------QNSQNSFTKLLQLKPKH--------------------PSSYVLLSNIYA 482
            Y         +   ++++ +L     H                     S YVLL NIY+
Sbjct: 639 AYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYS 698

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           A G+W   A VR+ M+RR + K+PG S+IEV+G +HRF AG   H  ++E+H+ +E +  
Sbjct: 699 AAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWG 758

Query: 541 GAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
               +GY P T  VLH++ + +K   L CHSEKLA+AFGL++  PG TI++ K L +C D
Sbjct: 759 EMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCND 818

Query: 600 CHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           CH   K+ SK+  REIVLRD  RFH+F++G CSC DYW
Sbjct: 819 CHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 856



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFE-QMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           +L+  + R G +  A  LF    P +G VV+W  M++   Q+G  ++A+   + M+  GV
Sbjct: 210 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 269

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAAS 351
           R +  T  SAL AC+++  L+ G  +H Y+  +D       + +ALVDMYA    +  A 
Sbjct: 270 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 329

Query: 352 LVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACW 408
            VF    +  K L  W AMI G A  G  E+A++ F +M   +G  P  T   ++L AC 
Sbjct: 330 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 389

Query: 409 YS 410
            S
Sbjct: 390 RS 391



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAMINGFSQNGEAEKA 280
           G++ + + A   +L+  + R G L  A E+F  + +     VS+ ++I+        + A
Sbjct: 89  GLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHA 148

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI------- 333
           LA    ML  G     FT+VS L A + + A  A VR+      + F LK  +       
Sbjct: 149 LAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGR--EAHAFALKNGLLHGHQRF 206

Query: 334 -GTALVDMYAKCGNIEAASLVF-GETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              AL+ MYA+ G +  A  +F G T  + D++TW  M+  L   G +++A+Q    M+ 
Sbjct: 207 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 266

Query: 391 SGTEPDGTVFLAILTAC 407
            G  PDG  F + L AC
Sbjct: 267 LGVRPDGVTFASALPAC 283



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 17/251 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   +  +  +   L+   +     D A  IF      ++  +N LI G     H
Sbjct: 400 VHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGH 459

Query: 110 FQSCISHFVFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                     M +L    V PN +T   +    A L+  + G+ +H   V+  ++ D  V
Sbjct: 460 VADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAV 519

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
              L DMY + G    +  VFD  P +N     + WNVLI      G   +A  LF  M 
Sbjct: 520 GSALVDMYAKCGCLALSRAVFDRLPRRN----TITWNVLIMAYGMHGLGGEATVLFDRMT 575

Query: 226 ----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-----AMINGFSQNGE 276
                + N  ++++ +      G + +  +LF  M     V  T      +++   + G 
Sbjct: 576 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 635

Query: 277 AEKALAMFFQM 287
            ++A AM   M
Sbjct: 636 LDEAYAMVTSM 646


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 210/697 (30%), Positives = 354/697 (50%), Gaps = 90/697 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           +T   +++   SS   K    +H +II   L A++ +   L++      ++ +A  +F+ 
Sbjct: 226 LTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATN-LWNSLVTFYGKCGNLQHASQLFER 284

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLS 146
            + K++  +N +I    +    ++ +  F  ML++   V+PNR+T+  +  +V+ LS L 
Sbjct: 285 ISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALR 344

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYV---QLGKTRGAF------------------- 184
            GR +H  I +  +E D  +   L   Y    ++GK R  F                   
Sbjct: 345 CGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYE 404

Query: 185 ------KVFD-------ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
                 + FD          E +     +++N      S + Y R+  E+ G + ++   
Sbjct: 405 QNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITP 464

Query: 232 SWVSL------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
             VSL      +  + +   +  A ++F+ M  +   SW AM++G+S+N + E  L +F 
Sbjct: 465 GGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFL 524

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-------CNDFGLKGAIGTALV 338
            +L  G   +  ++   L++C ++ +L+ G + H  ++       C       +I  AL+
Sbjct: 525 DILKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALI 584

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY+KCG+I+ A+ VF + + KD+ +WTAMI G A HG   +A+Q F++M   G +P+  
Sbjct: 585 SMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQV 644

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------- 448
            FLA+L AC + G V+    +FDSM  DY + PS++H+  +++L  R GQ          
Sbjct: 645 TFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVEF 704

Query: 449 ------------------------DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
                                    S+       + TK+L+L+P+  ++Y+LL+N+YA+ 
Sbjct: 705 GITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEATYILLANLYASS 764

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
           G W+D  +VR  M+ + ++K+ G S+I+     H F AG   H   KEI+ KL  +    
Sbjct: 765 GLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNRRHVFVAGDVYHPQRKEIYEKLAQLNYSC 824

Query: 543 REQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGT-TIKIVKKLTICGDC 600
           R  GY+P TE VLH++ E EKE  LGCHSEKLA++FGL+    G   I+++K L +C DC
Sbjct: 825 RRMGYVPMTELVLHDVDETEKEAILGCHSEKLAVSFGLLNCGVGNGVIRVMKNLRVCEDC 884

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           HS MK+AS + +REI+LRD+ RFH F+DG+CSC DYW
Sbjct: 885 HSWMKFASLLEKREILLRDSQRFHLFRDGSCSCGDYW 921



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 191/437 (43%), Gaps = 46/437 (10%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISL--IHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           + P    K   +P     ++++ S   +HS    KQL   +       +F  S  +  L+
Sbjct: 4   VYPVATFKVPPRPLLPSIKSNVTSFRFLHSHLRNKQLEFQNHGFSSQFIFRCSACSKFLV 63

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
           S +  H+ +  A  +FD+F  +++  ++ LI   +   +F      F  M+   ++PN  
Sbjct: 64  SQSE-HERLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGF 122

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           +   + K   S   + L R LH   +++G   D+ +R     MY + G    A +VFDET
Sbjct: 123 SLASLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDET 182

Query: 191 PEKNKSESVLLWNVLI------------------------------------NGCSKIGY 214
                +  +LLWN +I                                    N C   G 
Sbjct: 183 SL--LALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGE 240

Query: 215 LRKAVELFGMMPKKNVAS---WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
            +    + G + K  + +   W SL+  + + G+L+ A +LFE++  K VVSW AMI   
Sbjct: 241 EKYGAMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAAN 300

Query: 272 SQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            Q GE E AL +F +ML  +  V+ N  T +S LSA + + AL  G  +H +I      +
Sbjct: 301 EQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEV 360

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
             +I  +L+  Y+KC  +  A  +F     +D+++W +M+ G   + +  +    FK+MM
Sbjct: 361 DTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMM 420

Query: 390 YSGTEPDGTVFLAILTA 406
            SG EPD      I  A
Sbjct: 421 LSGIEPDSHSLTIIFNA 437



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 128/269 (47%), Gaps = 29/269 (10%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           LK A +LF+  P + V+SW+A+I  +S+ G   +A  +F +M+  G++ N F++ S L  
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKV 130

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK--EKDLL 363
               G +    ++H +     FGL   I  A + MY++CG +E A  VF ET     D+L
Sbjct: 131 SCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDIL 190

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKL------- 415
            W ++I     HG + + ++ F KM+  G   P    + +++ AC  SG+ K        
Sbjct: 191 LWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGR 250

Query: 416 -------ALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----------VGQDSQGY-QNSQ 457
                  A N ++S+   Y    +++H + +   +SR             + +G  +N+ 
Sbjct: 251 IIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENAL 310

Query: 458 NSFTKLLQLKPK-HPSSYVLLSNIYAAEG 485
             F ++L+++P   P+    LS + A  G
Sbjct: 311 GLFRRMLKVEPPVQPNRVTFLSLLSAVSG 339


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 206/638 (32%), Positives = 315/638 (49%), Gaps = 88/638 (13%)

Query: 82  ALSIFDHFTPK--NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           A  +F   TP   ++  +N ++  L ++  F   +     M+ L VRP+ +T+     + 
Sbjct: 222 AQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPAC 281

Query: 140 ASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYV---QLGKTRGAFKVFDETPEKNK 195
           + L LL +GR +H  ++K   +  ++FV   L DMY    Q+GK R   +VFD  P+  K
Sbjct: 282 SRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR---QVFDMVPDSGK 338

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF-------GMMP--------------------KK 228
              + +WN +I G ++ G   +A+ LF       G +P                    K+
Sbjct: 339 Q--LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKE 396

Query: 229 NVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
            V  +V             +L+D + R G    A  +F  +    VVSW  +I G    G
Sbjct: 397 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 456

Query: 276 EAEKALAM---FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
               A  +     Q+ + GV  N  T+++ L  CA + A   G  +H Y   +      A
Sbjct: 457 HVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA 516

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G+ALVDMYAKCG +  +  VF     ++ +TW  +I    +HG   +A   F +M  SG
Sbjct: 517 VGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASG 576

Query: 393 -TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
              P+   F+A L AC +SG V   L  F +M  D+ +EP+      VV++L R G+  +
Sbjct: 577 EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDE 636

Query: 452 GY---------QNSQNSFTKLLQLKPKH--------------------PSSYVLLSNIYA 482
            Y         +   ++++ +L     H                     S YVLL NIY+
Sbjct: 637 AYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYS 696

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           A G+W   A VR+ M+RR + K+PG S+IEV+G +HRF AG   H  ++E+H+ +E +  
Sbjct: 697 AAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWG 756

Query: 541 GAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
               +GY P T  VLH++ + +K   L CHSEKLA+AFGL++  PG TI++ K L +C D
Sbjct: 757 EMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCND 816

Query: 600 CHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           CH   K+ SK+  REIVLRD  RFH+F++G CSC DYW
Sbjct: 817 CHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFE-QMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           +L+  + R G +  A  LF    P +G VV+W  M++   Q+G  ++A+   + M+  GV
Sbjct: 208 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 267

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAAS 351
           R +  T  SAL AC+++  L+ G  +H Y+  +D       + +ALVDMYA    +  A 
Sbjct: 268 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 327

Query: 352 LVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACW 408
            VF    +  K L  W AMI G A  G  E+A++ F +M   +G  P  T   ++L AC 
Sbjct: 328 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 387

Query: 409 YS 410
            S
Sbjct: 388 RS 389



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAMINGFSQNGEAEKA 280
           G++ + + A   +L+  + R G L  A E+F  + +     VS+ ++I+        + A
Sbjct: 87  GLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHA 146

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI------- 333
           LA    ML  G     FT+VS L A + + A  A VR+      + F LK  +       
Sbjct: 147 LAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGR--EAHAFALKNGLLHGHQRF 204

Query: 334 -GTALVDMYAKCGNIEAASLVF-GETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              AL+ MYA+ G +  A  +F G T  + D++TW  M+  L   G +++A+Q    M+ 
Sbjct: 205 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 264

Query: 391 SGTEPDGTVFLAILTAC 407
            G  PDG  F + L AC
Sbjct: 265 LGVRPDGVTFASALPAC 281



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 17/251 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   +  +  +   L+   +     D A  IF      ++  +N LI G     H
Sbjct: 398 VHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGH 457

Query: 110 FQSCISHFVFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                     M +L    V PN +T   +    A L+  + G+ +H   V+  ++ D  V
Sbjct: 458 VADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAV 517

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
              L DMY + G    +  VFD  P +N     + WNVLI      G   +A  LF  M 
Sbjct: 518 GSALVDMYAKCGCLALSRAVFDRLPRRN----TITWNVLIMAYGMHGLGGEATVLFDRMT 573

Query: 226 ----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-----AMINGFSQNGE 276
                + N  ++++ +      G + +  +LF  M     V  T      +++   + G 
Sbjct: 574 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 633

Query: 277 AEKALAMFFQM 287
            ++A AM   M
Sbjct: 634 LDEAYAMVTSM 644


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 206/638 (32%), Positives = 315/638 (49%), Gaps = 88/638 (13%)

Query: 82  ALSIFDHFTPK--NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           A  +F   TP   ++  +N ++  L ++  F   +     M+ L VRP+ +T+     + 
Sbjct: 222 AQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPAC 281

Query: 140 ASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYV---QLGKTRGAFKVFDETPEKNK 195
           + L LL +GR +H  ++K   +  ++FV   L DMY    Q+GK R   +VFD  P+  K
Sbjct: 282 SRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR---QVFDMVPDSGK 338

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF-------GMMP--------------------KK 228
              + +WN +I G ++ G   +A+ LF       G +P                    K+
Sbjct: 339 Q--LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKE 396

Query: 229 NVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
            V  +V             +L+D + R G    A  +F  +    VVSW  +I G    G
Sbjct: 397 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 456

Query: 276 EAEKALAM---FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
               A  +     Q+ + GV  N  T+++ L  CA + A   G  +H Y   +      A
Sbjct: 457 HVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA 516

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G+ALVDMYAKCG +  +  VF     ++ +TW  +I    +HG   +A   F +M  SG
Sbjct: 517 VGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASG 576

Query: 393 -TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
              P+   F+A L AC +SG V   L  F +M  D+ +EP+      VV++L R G+  +
Sbjct: 577 EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDE 636

Query: 452 GY---------QNSQNSFTKLLQLKPKH--------------------PSSYVLLSNIYA 482
            Y         +   ++++ +L     H                     S YVLL NIY+
Sbjct: 637 AYAMVTSMETGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYS 696

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           A G+W   A VR+ M+RR + K+PG S+IEV+G +HRF AG   H  ++E+H+ +E +  
Sbjct: 697 AAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWG 756

Query: 541 GAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
               +GY P T  VLH++ + +K   L CHSEKLA+AFGL++  PG TI++ K L +C D
Sbjct: 757 EMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCND 816

Query: 600 CHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           CH   K+ SK+  REIVLRD  RFH+F++G CSC DYW
Sbjct: 817 CHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 854



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFE-QMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           +L+  + R G +  A  LF    P +G VV+W  M++   Q+G  ++A+   + M+  GV
Sbjct: 208 ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 267

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAAS 351
           R +  T  SAL AC+++  L+ G  +H Y+  +D       + +ALVDMYA    +  A 
Sbjct: 268 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 327

Query: 352 LVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACW 408
            VF    +  K L  W AMI G A  G  E+A++ F +M   +G  P  T   ++L AC 
Sbjct: 328 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 387

Query: 409 YS 410
            S
Sbjct: 388 RS 389



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 14/197 (7%)

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAMINGFSQNGEAEKA 280
           G++ + + A   +L+  + R G L  A E+F  + +     VS+ ++I+        + A
Sbjct: 87  GLLHRPSPAVANALLTAYARCGRLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHA 146

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI------- 333
           LA    ML  G     FT+VS L A + + A  A VR+      + F LK  +       
Sbjct: 147 LAALRAMLAGGHPLTSFTLVSVLRAVSHLPAAAAAVRLGR--EAHAFALKNGLLHGHQRF 204

Query: 334 -GTALVDMYAKCGNIEAASLVF-GETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              AL+ MYA+ G +  A  +F G T  + D++TW  M+  L   G +++A+Q    M+ 
Sbjct: 205 AFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVA 264

Query: 391 SGTEPDGTVFLAILTAC 407
            G  PDG  F + L AC
Sbjct: 265 LGVRPDGVTFASALPAC 281



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 17/251 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   +  +  +   L+   +     D A  IF      ++  +N LI G     H
Sbjct: 398 VHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGH 457

Query: 110 FQSCISHFVFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                     M +L    V PN +T   +    A L+  + G+ +H   V+  ++ D  V
Sbjct: 458 VADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAV 517

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
              L DMY + G    +  VFD  P +N     + WNVLI      G   +A  LF  M 
Sbjct: 518 GSALVDMYAKCGCLALSRAVFDRLPRRN----TITWNVLIMAYGMHGLGGEATVLFDRMT 573

Query: 226 ----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-----AMINGFSQNGE 276
                + N  ++++ +      G + +  +LF  M     V  T      +++   + G 
Sbjct: 574 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 633

Query: 277 AEKALAMFFQM 287
            ++A AM   M
Sbjct: 634 LDEAYAMVTSM 644


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 190/591 (32%), Positives = 319/591 (53%), Gaps = 67/591 (11%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
           D AL++FD  T  ++  +N +I G     +    +  F FML+ S ++P++ T   V  +
Sbjct: 228 DLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSA 287

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A+   L LG+ +H  IV++ V+    V   L  MY + G    A ++            
Sbjct: 288 CANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRI------------ 335

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
                               VE+ G  P  NV ++ SL+DG+ + GD+  A  +F+ +  
Sbjct: 336 --------------------VEITGT-PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKH 374

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + VV+WTAMI G++QNG    AL +F  M+  G + N++T+ + LS  + + +L+ G ++
Sbjct: 375 RDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQL 434

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGR 377
           H      +     ++G AL+ MY++ G+I+ A  +F      +D LTWT+MI  LA HG 
Sbjct: 435 HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGL 494

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
             +AI+ F+KM+    +PD   ++ +L+AC + G V+   ++F+ M+  + IEP+  H+ 
Sbjct: 495 GNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYA 554

Query: 438 VVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPK 469
            +++LL R G   + Y   +N                            +  KLL + P 
Sbjct: 555 CMIDLLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPN 614

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKL 527
           +  +Y+ L+N  +A G+W+D A+VR  M+ +++KK+ G+S++++   VH F  E   H  
Sbjct: 615 NSGAYLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQ 674

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
              I+  +  I    ++ G++P T  VLH++++E KE+ L  HSEKLA+AF LI T   T
Sbjct: 675 RDAIYCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHT 734

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T++I+K L +C DCHS ++Y S + +REI++RD TRFH+FKDG+CSC+DYW
Sbjct: 735 TVRIMKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 112/458 (24%), Positives = 183/458 (39%), Gaps = 104/458 (22%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLI- 70
           + PT N      PS++    H++     S      R IHA+II H L +    +T  L+ 
Sbjct: 2   LTPTPN-----PPSHSDACVHLLQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLN 56

Query: 71  ------SSASLHK------------------------SIDYALSIFDHFTPKNLHIFNVL 100
                 SS+  H+                        ++D A  +FD     +   +  +
Sbjct: 57  LYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTM 116

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           I G      F+S +  F+ M+   + P + T+  V  S A+   L +G+ +H  +VK G 
Sbjct: 117 IVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQ 176

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
                V   L +MY + G +  A  VFD    K+ S     WN +I+   +      A+ 
Sbjct: 177 SGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTST----WNTMISMHMQFCQFDLALA 232

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           LF  M   ++ SW S+I G+  +G   +A E F                           
Sbjct: 233 LFDQMTDPDIVSWNSIITGYCHQGYDIRALETFS-------------------------- 266

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
               F +  + ++ + FT+ S LSACA   +L+ G ++H +I   D  + GA+G AL+ M
Sbjct: 267 ----FMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISM 322

Query: 341 YAKC---------------------------------GNIEAASLVFGETKEKDLLTWTA 367
           YAK                                  G+I+ A  +F   K +D++ WTA
Sbjct: 323 YAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTA 382

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           MI G A +G    A+  F+ M+  G +P+     A+L+
Sbjct: 383 MIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLS 420



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/235 (31%), Positives = 120/235 (51%), Gaps = 8/235 (3%)

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           V L N L+N   K G    A  LF  MP K   SW +++    + G+L  A  +F+++P+
Sbjct: 48  VFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQ 107

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
              VSWT MI G++  G  + A+  F +M+ +G+    FT  + L++CA   AL+ G +V
Sbjct: 108 PDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFTNVLASCAAAQALDVGKKV 167

Query: 319 HNYISCNDFGLKGAIGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           H+++     G  G +  A  L++MYAKCG+   A +VF   + KD  TW  MI       
Sbjct: 168 HSFVV--KLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFC 225

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           +++ A+  F +M    T+PD   + +I+T   + G    AL  F  M     ++P
Sbjct: 226 QFDLALALFDQM----TDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKP 276



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 120/301 (39%), Gaps = 36/301 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ID A +IFD    +++  +  +I G A+N      +  F  M+R   +PN  T   V   
Sbjct: 362 IDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSV 421

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           ++SL+ L  G+ LH + ++        V   L  MY + G  + A K+F+       +  
Sbjct: 422 ISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDT-- 479

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFE 254
            L W  +I   ++ G   +A+ELF  M + N+     ++V ++      G +++    F 
Sbjct: 480 -LTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFN 538

Query: 255 QMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M      E     +  MI+   + G  E+A      M    +  +     S LS+C   
Sbjct: 539 LMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNM---PIEPDVVAWGSLLSSC--- 592

Query: 310 GALEAGVRVHNYISCN----------DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
                  RVH Y+             D    GA   AL +  + CG  E A+ V    K+
Sbjct: 593 -------RVHKYVDLAKVAAEKLLLIDPNNSGAY-LALANTLSACGKWEDAAKVRKSMKD 644

Query: 360 K 360
           K
Sbjct: 645 K 645



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 14/261 (5%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I+   KP NN T   ++S+I S  S    +Q+HA  I     +S  +   LI+  S   S
Sbjct: 404 IREGPKP-NNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSGS 462

Query: 79  IDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           I  A  IF+H    ++   +  +I  LA++      I  F  MLR++++P+ +TY  V  
Sbjct: 463 IKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVLS 522

Query: 138 SVASLSLLSLGRGLHCLIVK-SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           +   + L+  G+    L+     +E  +     + D+  + G    A+      P +   
Sbjct: 523 ACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIE--- 579

Query: 197 ESVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
             V+ W  L++ C    Y+   + A E   ++   N  ++++L +     G  + A ++ 
Sbjct: 580 PDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTLSACGKWEDAAKVR 639

Query: 254 EQMPEKGV-----VSWTAMIN 269
           + M +K V      SW  + N
Sbjct: 640 KSMKDKAVKKEQGFSWVQIKN 660


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  332 bits (850), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 201/611 (32%), Positives = 323/611 (52%), Gaps = 55/611 (9%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           K  + A  +FD    +++  +N +I G   N   +  +  +  M+ L +  +  T   V 
Sbjct: 199 KRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 258

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
              A+   LSLG+ +H L +KS  E        L DMY + G   GA +VF++  E+N  
Sbjct: 259 VGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN-- 316

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
             V+ W  +I G ++ G+   A+ L   M K+    +V +  S++    R G L    ++
Sbjct: 317 --VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV 374

Query: 253 FEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGV----------RANDFT 298
            + +    + S      A+++ +++ G  E A ++F  M+   +          + +  T
Sbjct: 375 HDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRT 434

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +   L ACA + ALE G  +H YI  N +     +  ALVD+Y KCG +  A L+F    
Sbjct: 435 MACILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIP 494

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KDL++WT MI G  +HG   +AI  F +M  +G EPD   F++IL AC +SG ++    
Sbjct: 495 SKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWR 554

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------------- 453
           FF  M+ D+ IEP ++H+  +V+LLSR G  S+ Y                         
Sbjct: 555 FFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIY 614

Query: 454 ---QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
              + ++    ++ +L+P++   YVLL+NIYA   + ++V R+R  + ++ ++K+PG S+
Sbjct: 615 HDIELAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSW 674

Query: 511 IEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEAL 566
           IE+ G V+ F +G    H  +K+I S L+ +    +E+GY P T++ L N  E +KE AL
Sbjct: 675 IEIKGRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMAL 734

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+AFGL+   P  TI++ K L +CGDCH + K+ SK ++REIVLRD+ RFH+F
Sbjct: 735 CGHSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHF 794

Query: 626 KDGTCSCRDYW 636
           KDG CSCR +W
Sbjct: 795 KDGYCSCRGFW 805



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 139/314 (44%), Gaps = 55/314 (17%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TY  V +  A L  L+ G+ +H +I  + V  D  + + L   Y   G  +   +VFD  
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFD-- 158

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK-- 248
                                             M KKNV  W  ++  + + GD K+  
Sbjct: 159 ---------------------------------TMEKKNVYLWNFMVSEYAKIGDFKESI 185

Query: 249 ------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                             A ELF+++ ++ V+SW +MI+G+  NG  E+ L ++ QM+  
Sbjct: 186 CLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYL 245

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G+  +  T++S L  CA  G L  G  VH+    + F  +      L+DMY+KCG+++ A
Sbjct: 246 GIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGA 305

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF +  E+++++WT+MI G    G  + AI   ++M   G + D     +IL AC  S
Sbjct: 306 LRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARS 365

Query: 411 GQVKLALNFFDSMR 424
           G +    +  D ++
Sbjct: 366 GSLDNGKDVHDYIK 379



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 170/379 (44%), Gaps = 30/379 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +H+  I  +       +  L+   S    +D AL +F+    +N+  +  +I G   +
Sbjct: 271 KAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRD 330

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I     M +  V+ + +    +  + A    L  G+ +H  I  + +  + FV 
Sbjct: 331 GWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVC 390

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN--------------GCSKIG 213
             L DMY + G   GA  VF     K+    ++ WN ++                C+ + 
Sbjct: 391 NALMDMYAKCGSMEGANSVFSTMVVKD----IISWNTMVGELKPDSRTMACILPACASLS 446

Query: 214 YLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
            L +  E+ G + +   +S      +L+D +++ G L  A  LF+ +P K +VSWT MI 
Sbjct: 447 ALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIA 506

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+  +G   +A+A F +M DAG+  ++ + +S L AC+  G LE G R   YI  NDF +
Sbjct: 507 GYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF-YIMKNDFNI 565

Query: 330 KGAIG--TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYF 385
           +  +     +VD+ ++ GN+  A   F ET     D   W A++ G  I+   E A +  
Sbjct: 566 EPKLEHYACMVDLLSRTGNLSKA-YKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVA 624

Query: 386 KKMMYSGTEPDGTVFLAIL 404
           +++     EP+ T +  +L
Sbjct: 625 ERVFE--LEPENTGYYVLL 641



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 94/239 (39%), Gaps = 54/239 (22%)

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           V  + A I  F Q G+ E A+ +      + +     T  S L  CA + +L  G +VH+
Sbjct: 66  VTDYNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKKVHS 123

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNI--------------------------------- 347
            I  N  G+  A+G  LV  YA CG++                                 
Sbjct: 124 IIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKE 183

Query: 348 ------------------EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
                             E+AS +F +  ++D+++W +MI G   +G  E+ +  +K+MM
Sbjct: 184 SICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMM 243

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           Y G + D    +++L  C  SG + L      S+      E  +     ++++ S+ G 
Sbjct: 244 YLGIDVDLATIISVLVGCANSGTLSLG-KAVHSLAIKSSFERRINFSNTLLDMYSKCGD 301



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 50/301 (16%)

Query: 34  IISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I S++H+   S S    + +H  I  +N+ ++  +   L+   +   S++ A S+F    
Sbjct: 355 ITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMV 414

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            K++  +N ++  L  +S   +CI                  P    + ASLS L  G+ 
Sbjct: 415 VKDIISWNTMVGELKPDSRTMACI-----------------LP----ACASLSALERGKE 453

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I+++G   D  V   L D+YV+ G    A  +FD  P K+    ++ W V+I G  
Sbjct: 454 IHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKD----LVSWTVMIAGYG 509

Query: 211 KIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
             GY  +A+  F  M    +     S++S++      G L++    F  M      E  +
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
             +  M++  S+ G   KA    ++ ++    A D T+          GAL  G R+++ 
Sbjct: 570 EHYACMVDLLSRTGNLSKA----YKFIETLPIAPDATI---------WGALLCGCRIYHD 616

Query: 322 I 322
           I
Sbjct: 617 I 617


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 198/630 (31%), Positives = 337/630 (53%), Gaps = 79/630 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    +N   + ++I  L +  +    I  F+ M+     P+R T   V  + A+
Sbjct: 224 AFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACAN 283

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPEKNKSES 198
           + LL LG+ LH   ++ G+  D  V   L +MY +    G    A K+FD+  + N    
Sbjct: 284 MELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN---- 339

Query: 199 VLLWNVLING-CSKIGYLRKAVELF-GMM-----PK-----------KNVASWV------ 234
           V  W  +I G   K GY  +A++LF GM+     P             N+A+        
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 235 ----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                           SLI  + R G +  A + F+ + EK ++S+  +I+ +++N  +E
Sbjct: 400 THAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSE 459

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +AL +F ++ D G+ A+ FT  S LS  A +G +  G ++H  +  +   L  ++  AL+
Sbjct: 460 EALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALI 519

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            MY++CGNIE+A  VF + +++++++WT++I G A HG   QA++ F KM+  G  P+  
Sbjct: 520 SMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEV 579

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--NS 456
            ++A+L+AC + G V      F SM  ++ + P ++H+  +V++L R G  S+  Q  NS
Sbjct: 580 TYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINS 639

Query: 457 --------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +++   +++ +P  P++Y+LLSN+YA+  +W +V
Sbjct: 640 MPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEV 699

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
           + +R  M+ + + K+ G S++EV   VH+F  G   H  A EI+ +L+++    ++ GY+
Sbjct: 700 SNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYV 759

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P  ++VLH+++EE KE+ L  HSEK+A+AFGLI T+    I++ K L ICGDCHS +KY 
Sbjct: 760 PNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYI 819

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           S  + REI++RD  RFH+ KDG CSC +YW
Sbjct: 820 SMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/410 (25%), Positives = 182/410 (44%), Gaps = 50/410 (12%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAENS 108
           +H ++   +L   S     LIS  S     + A SIF    + ++L  ++ ++   A N+
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNN 147

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVR 167
                +  FV M+     PN   +   +++ ++   +S+G  +   ++K+G ++ D  V 
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVG 207

Query: 168 VHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
             L DM+V+  G    AFKVF++ PE+N     + W ++I    + GY  +A++LF    
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPERN----AVTWTLMITRLMQFGYAGEAIDLFLDMI 263

Query: 223 --GMMPKKNVASWV---------------------------------SLIDGFMR---KG 244
             G  P +   S V                                  LI+ + +    G
Sbjct: 264 FSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDG 323

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQ-NGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
            +  A ++F+Q+ +  V SWTAMI G+ Q  G  E+AL +F  M+   V  N FT  S L
Sbjct: 324 SMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTL 383

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA + AL  G +V  +     F     +  +L+ MYA+ G I+ A   F    EK+L+
Sbjct: 384 KACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLI 443

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           ++  +I   A +   E+A++ F ++   G       F ++L+     G +
Sbjct: 444 SYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTI 493



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 48/346 (13%)

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           N      IS    M+     P+  TY    K         +G  +H  + +S ++ D+  
Sbjct: 44  NGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVT 103

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-------------------- 206
              L  +Y + G+   A  +F        S  ++ W+ ++                    
Sbjct: 104 LNSLISLYSKCGQWEKATSIFRLM---GSSRDLISWSAMVSCFANNNMGFRALLTFVDMI 160

Query: 207 -NG--------------CSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMR-KGD 245
            NG              CS   ++     +FG + K      +V     LID F++ +GD
Sbjct: 161 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGD 220

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           L  A ++FE+MPE+  V+WT MI    Q G A +A+ +F  M+ +G   + FT+   +SA
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC---GNIEAASLVFGETKEKDL 362
           CA +  L  G ++H+    +   L   +G  L++MYAKC   G++ AA  +F +  + ++
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 363 LTWTAMIWGLAIHGRY-EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +WTAMI G    G Y E+A+  F+ M+ +   P+   F + L AC
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC 386



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 17/315 (5%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   LIS  +    ID A   FD    KNL  +N +I   A+N + +  +  F  +    
Sbjct: 413 VANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQG 472

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  +  T+  +    AS+  +  G  +H  ++KSG++ +  V   L  MY + G    AF
Sbjct: 473 MGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAF 532

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGF 240
           +VF++  ++N    V+ W  +I G +K G+  +A+ELF  M     + N  ++++++   
Sbjct: 533 QVFEDMEDRN----VISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSAC 588

Query: 241 MRKGDLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
              G + +  + F+ M  E GV+     +  +++   ++G   +A+     M     +A+
Sbjct: 589 SHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSM---PYKAD 645

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
                + L AC   G LE G      I   +     A    L ++YA     +  S +  
Sbjct: 646 ALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAY-ILLSNLYASISKWDEVSNIRK 704

Query: 356 ETKEKDLLTWTAMIW 370
             KEK L+      W
Sbjct: 705 AMKEKXLIKEAGCSW 719



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/231 (21%), Positives = 97/231 (41%), Gaps = 12/231 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            QIHA++I   L  +  +   LIS  S   +I+ A  +F+    +N+  +  +I G A++
Sbjct: 497 EQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKH 556

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFV 166
                 +  F  ML   VRPN +TY  V  + + + L++ G +    +  + GV      
Sbjct: 557 GFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEH 616

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL---RKAVELFG 223
              + D+  + G    A +  +  P K  +   L+W   +  C   G L   + A ++  
Sbjct: 617 YACIVDILGRSGSLSEAIQFINSMPYKADA---LVWRTFLGACRVHGNLELGKHAAKMII 673

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMIN 269
                + A+++ L + +       +   + + M EK ++     SW  + N
Sbjct: 674 EQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVEN 724


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 196/669 (29%), Positives = 338/669 (50%), Gaps = 87/669 (13%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K +++ S+ I+  +I+    S  +  Q +++H   I +  F    +   LI + +    +
Sbjct: 257 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLM 316

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A+ +F+    K++  +N ++ G +++ +F++    F  M + ++  + +T+  V    
Sbjct: 317 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAG- 375

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                                             Y Q G +  A  +F +        + 
Sbjct: 376 ----------------------------------YSQRGCSHEALNLFRQMIFSGSLPNC 401

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPK--------------KNVASWVSLIDGFMRKGD 245
           +    +++ C+ +G   +  E+     K              +++  + +LID + +   
Sbjct: 402 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 461

Query: 246 LKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVS 301
            K A  +F+ +P  E+ VV+WT MI G +Q G++  AL +F +M+    GV  N +T+  
Sbjct: 462 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 521

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKE 359
            L ACA + A+  G ++H Y+  +      A  +   L+DMY+KCG+++ A  VF    +
Sbjct: 522 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 581

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           K  ++WT+M+ G  +HGR  +A+  F KM  +G  PD   FL +L AC + G V   L++
Sbjct: 582 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 641

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------------ 455
           FDSM  DY + P  +H+   ++LL+R G+  + ++                         
Sbjct: 642 FDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHS 701

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               ++++  KL+++  ++  SY L+SNIYA  GRWKDVAR+R LM++  IKK PG S++
Sbjct: 702 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 761

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGC 568
           +       F  G   H L+ +I++ LE ++   +  GY+P T + LH++ +EEK   L  
Sbjct: 762 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 821

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLALA+GL+ T+PG  I+I K L +CGDCHS   Y SKI   EIV+RD +RFH+FK+
Sbjct: 822 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 881

Query: 628 GTCSCRDYW 636
           G+CSC  YW
Sbjct: 882 GSCSCGGYW 890



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 211/502 (42%), Gaps = 115/502 (22%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNL-------------------FASSR-ITT 67
           ++  +H  SL+    S   + QIH QII   L                   F S R + T
Sbjct: 34  DVYPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGT 93

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            +++S     + DYAL + +  TP     +N+LIR   +     S I+    MLR   RP
Sbjct: 94  GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP 153

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +  T P V K+   L     G   H LI  +G E + F+   L  MY + G    A  +F
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----------PKKNVASWV--- 234
           DE  ++   + V+ WN +++   K      A++LF  M           + ++ S V   
Sbjct: 214 DEITQRGI-DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 272

Query: 235 --------------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                                           +LID + + G ++ A ++F  M  K VV
Sbjct: 273 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 332

Query: 263 SWTAMINGFSQNGEAE-----------------------------------KALAMFFQM 287
           SW AM+ G+SQ+G  E                                   +AL +F QM
Sbjct: 333 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 392

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SC-----NDFGLKGA---IGTAL 337
           + +G   N  T++S LSACA +GA   G  +H Y   +C     NDFG +     +  AL
Sbjct: 393 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 452

Query: 338 VDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GT 393
           +DMY+KC + +AA  +F +   +E++++TWT MI G A +G    A++ F +M+    G 
Sbjct: 453 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 512

Query: 394 EPDGTVFLAILTACWYSGQVKL 415
            P+      IL AC +   +++
Sbjct: 513 APNAYTISCILMACAHLAAIRI 534


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 207/658 (31%), Positives = 336/658 (51%), Gaps = 57/658 (8%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS----SASLHKSI 79
           KP N    + +  L   ++  KQ  Q HA  +       + ++  L+S     AS    +
Sbjct: 145 KPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLL 204

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHF---QSCISHFVFMLRLSVRPNRLTYPFVS 136
             A  +FD    K+   +  ++ G  +N +F   +  +      ++L V  N +   +V+
Sbjct: 205 HSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKL-VAYNAMISGYVN 263

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAF-----VRVHLADMYVQLGKTRGAFKVFDETP 191
           +     +L  + R     +V SG+E D F     +R       +QLGK   A+ +     
Sbjct: 264 RGFYQEALEMVRR-----MVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVL----- 313

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
            + +  S    N L++   K G   +A  +F  MP K++ SW +L+ G++  G + +A  
Sbjct: 314 -RREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKL 372

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F++M EK ++SW  MI+G ++NG  E+ L +F  M   G    D+    A+ +CA +GA
Sbjct: 373 IFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGA 432

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
              G + H  +    F    + G AL+ MYAKCG +E A  VF      D ++W A+I  
Sbjct: 433 YCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAA 492

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           L  HG   +A+  +++M+  G  PD    L +LTAC ++G V     +FDSM   Y I P
Sbjct: 493 LGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPP 552

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKL 463
              H+  +++LL R G+ S      ++                            +  KL
Sbjct: 553 GADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKL 612

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--E 521
             L P+H  +Y+LLSN++AA G+W++VARVR LM+ R +KK+   S+IE+   VH F  +
Sbjct: 613 FGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVD 672

Query: 522 AGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLALAFGL 579
              H  A+ ++  L+D+    R  GY+P T +VLH+++ +  KE+ L  HSEK+A+AFGL
Sbjct: 673 DTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGL 732

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++  PGTTI+I K L  CGDCH+  ++ S + QR+I+LRD  RFH+F++G CSC ++W
Sbjct: 733 MKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 116/255 (45%), Gaps = 39/255 (15%)

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP--E 258
           + N LI+   K   L  A +LF  + + +  +  +++ G+   GD+  A  +FE+ P   
Sbjct: 51  ILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCM 110

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG-VR 317
           +  V + AMI GFS N +   A+ +F +M   G + ++FT  S L+  A V   E   V+
Sbjct: 111 RDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVADDEKQCVQ 170

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGN----IEAASLVFGETKEKDLLTWT------- 366
            H     +  G   ++  ALV +Y+KC +    + +A  VF E  EKD  +WT       
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230

Query: 367 -------------------------AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
                                    AMI G    G Y++A++  ++M+ SG E D   + 
Sbjct: 231 KNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFTYP 290

Query: 402 AILTACWYSGQVKLA 416
           +++ AC  +G ++L 
Sbjct: 291 SVIRACATAGLLQLG 305


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  332 bits (850), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 211/627 (33%), Positives = 317/627 (50%), Gaps = 76/627 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    K++  +N +I G  +   F   I  F+ M+   +RP+ +T   + K+   
Sbjct: 199 AQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQ 258

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
             L  +G   H  ++  G+  D FV   L DMY  LG T  A  VFD       S S++ 
Sbjct: 259 SGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMC----SRSLIS 314

Query: 202 WNV-----------------------------------LINGCSKIGYLRKAVELFGMMP 226
           WN                                    LI GCS+   L     L   + 
Sbjct: 315 WNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCII 374

Query: 227 KKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           +K + S +    +++D + + G +K+A  +F +M +K V++WTAM+ G SQNG AE AL 
Sbjct: 375 RKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALK 434

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F QM +  V AN  T+VS +  CA +G+L  G  VH +   + +     I +AL+DMYA
Sbjct: 435 LFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYA 494

Query: 343 KCGNIEAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           KCG I +A  +F  E   KD++   +MI G  +HG    A+  + +M+    +P+ T F+
Sbjct: 495 KCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFV 554

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------Y 453
           ++LTAC +SG V+     F SM  D+ + P  KH+  +V+L SR G+  +         +
Sbjct: 555 SLLTACSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPF 614

Query: 454 QNSQNSFTKLLQLKPKHPSS--------------------YVLLSNIYAAEGRWKDVARV 493
           Q S +    LL     H ++                    YV+LSNIYA   +W+ V  +
Sbjct: 615 QPSTDVLEALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYI 674

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R LM+ + +KK PG+S IEV   V+ F A    H    +I+  LE++      +GY+P T
Sbjct: 675 RGLMRMQGMKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDT 734

Query: 552 EWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
             VL ++ E  K + L  HSE+LA+AFGL+ T  G+ IKI K L +C DCH++ KY SKI
Sbjct: 735 SCVLRDVNEPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKI 794

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
            QREI++RD  RFH+F +G CSC D+W
Sbjct: 795 VQREIIVRDANRFHHFVNGKCSCNDFW 821



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 116/443 (26%), Positives = 201/443 (45%), Gaps = 44/443 (9%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSRITTQL 69
            A   +T +   H P  N   +   SL+H  SN+   ++ IHAQII + +   S +  +L
Sbjct: 26  NAAPSSTFVSVHHAPFFNQAPSVFSSLLHQFSNTLIHVKSIHAQIIKNWVSTESFLAAKL 85

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           I   S    + +A ++FD  +     + N +I G   N         F  M    +  N 
Sbjct: 86  IRVYSDLGFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINS 145

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T  F  K+   L    +G  +    V+ G     +V   + +  V+ G    A KVFD 
Sbjct: 146 YTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDG 205

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK---------------- 227
            PEK+    V+ WN +I G  + G   +++++F      G+ P                 
Sbjct: 206 MPEKD----VVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGL 261

Query: 228 -----------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                             +V    SL+D +   GD   A  +F+ M  + ++SW AMI+G
Sbjct: 262 KKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISG 321

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           + QNG   ++ A+F +++ +G   +  T+VS +  C++   LE G  +H+ I   +    
Sbjct: 322 YVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESH 381

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             + TA+VDMY+KCG I+ A++VFG   +K+++TWTAM+ GL+ +G  E A++ F +M  
Sbjct: 382 LVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQE 441

Query: 391 SGTEPDGTVFLAILTACWYSGQV 413
                +    ++++  C + G +
Sbjct: 442 EKVAANSVTLVSLVHCCAHLGSL 464



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 149/334 (44%), Gaps = 19/334 (5%)

Query: 34  IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           ++SLI   + T  L   R +H+ II   L +   ++T ++   S   +I  A  +F    
Sbjct: 350 LVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMG 409

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            KN+  +  ++ GL++N + +  +  F  M    V  N +T   +    A L  L+ GR 
Sbjct: 410 KKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRT 469

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H   ++ G  +DA +   L DMY + GK   A K+F+    +   + V+L N +I G  
Sbjct: 470 VHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFN---NEFHLKDVILCNSMIMGYG 526

Query: 211 KIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS--- 263
             G+ R A+ ++  M     K N  ++VSL+      G +++   LF  M     V    
Sbjct: 527 MHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERDHDVRPQH 586

Query: 264 --WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
             +  +++  S+ G  E+A  +  QM     + +   + + LS C        G+++ + 
Sbjct: 587 KHYACLVDLHSRAGRLEEADELVKQM---PFQPSTDVLEALLSGCRTHKNTNMGIQIADR 643

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           +   D+ L   I   L ++YA+    E+ + + G
Sbjct: 644 LISLDY-LNSGIYVMLSNIYAEARKWESVNYIRG 676



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 92/198 (46%), Gaps = 12/198 (6%)

Query: 230 VASWVS--------LIDGFMRKGDLKKAGELFEQ--MPEKGVVSWTAMINGFSQNGEAEK 279
           + +WVS        LI  +   G L  A  +F+Q  +PE  V +  AMI GF +N +  +
Sbjct: 71  IKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVCN--AMIAGFLRNQQHME 128

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
              +F  M    +  N +T + AL AC  +   E G+ +        F L   +G+++V+
Sbjct: 129 VPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVN 188

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
              K G +  A  VF    EKD++ W ++I G    G + ++IQ F +M+  G  P    
Sbjct: 189 FLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVT 248

Query: 400 FLAILTACWYSGQVKLAL 417
              +L AC  SG  K+ +
Sbjct: 249 MANLLKACGQSGLKKVGM 266


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 221/670 (32%), Positives = 330/670 (49%), Gaps = 77/670 (11%)

Query: 41  SNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           S S+   R +HA I+  H+    S +   L++  S     + A  +     P+ +  +  
Sbjct: 20  SRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQLVLSLTNPRTVVTWTS 79

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           LI G   N  F S + HF  M R  V PN  T+P V K+ ASL +   G+ LH L +K G
Sbjct: 80  LISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGG 139

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS----------------------- 196
              D FV     DMY + G    A  +FDE P +N +                       
Sbjct: 140 NILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFK 199

Query: 197 --------ESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKG 244
                    + + +   +N C+ I  L    +L G + +    ++V+ +  LID + + G
Sbjct: 200 KFLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCG 259

Query: 245 DLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           D+  +  +F ++    + VVSW +++    QN E E+A  +F Q     V   DF + S 
Sbjct: 260 DIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQARKE-VEPTDFMISSV 318

Query: 303 LSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           LSACA++G LE G  VH     +C +  +   +G+ALVD+Y KCG+IE A  VF E  E+
Sbjct: 319 LSACAELGGLELGRSVHALALKACVEENI--FVGSALVDLYGKCGSIEYAEQVFREMPER 376

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALN 418
           +L+TW AMI G A  G  + A+  F++M     G        +++L+AC  +G V+  L 
Sbjct: 377 NLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQ 436

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-------------------- 458
            F+SMR  Y IEP  +H+  VV+LL R G   + Y+  +                     
Sbjct: 437 IFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMH 496

Query: 459 --------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                   +  KL +L P    ++V+ SN+ A+ GRW++   VR  M+   IKK+ G+S+
Sbjct: 497 GKTKLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSW 556

Query: 511 IEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           + V   VH F+A    H+   EI + L  +    ++ GY+P     L +++EE K   + 
Sbjct: 557 VAVKNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVW 616

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEK+ALAFGLI    G  I+I K L IC DCHS +K+ SKI  REI++RD  RFH FK
Sbjct: 617 YHSEKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFK 676

Query: 627 DGTCSCRDYW 636
           DG CSC+DYW
Sbjct: 677 DGWCSCKDYW 686


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 208/630 (33%), Positives = 316/630 (50%), Gaps = 77/630 (12%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           D AL++F     KN+  + +++   AEN  F  C   F  ML   + P  +       + 
Sbjct: 27  DDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPGEVGISIFLSAC 86

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                +++GR +   I+ +G+E ++ V+  L  +Y +LG    A  VF     ++    V
Sbjct: 87  TDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRD----V 142

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKK------- 248
           + W+ ++   ++ G+ R+A+ LF  M    VA    + VS +D     GDL+        
Sbjct: 143 VAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRSGALMHQR 202

Query: 249 ----------------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                                       A E F Q+ EK VV+W+A+   +++N     A
Sbjct: 203 VEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAISAAYARNDRNRDA 262

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
           + +  +M   G+  N  T VS L ACA + AL+ G R+H  I     GL+  +   TALV
Sbjct: 263 IRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERIHVLGGGLESDVYVLTALV 322

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           +MY+KCGN+  A  +F +    DL+ W ++I   A HG+ E+A++ F++M   G +P   
Sbjct: 323 NMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRLEGLQPTII 382

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQG---- 452
            F ++L AC ++G +      F S   D+ I P  +H   +V+LL R G   DS+     
Sbjct: 383 TFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIVDSEDLLLH 442

Query: 453 -------------------YQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                              Y+N   +      L QL P+  + YVLLSN+YA  GRW DV
Sbjct: 443 MPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYVLLSNMYAKAGRWSDV 502

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYM 548
           AR+R  MQ     K+ G S+IEV   VH F +G   H    EIH++L+ +    +  GY+
Sbjct: 503 ARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTKLMKAAGYV 562

Query: 549 PGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P TE VLH++K+E KE  +G HSEKLA+AF L+ T  G+ I++VK L +C DCH+  K+ 
Sbjct: 563 PDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCNDCHTASKFI 622

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           SK+  REIV+RD  RFH F++G CSC DYW
Sbjct: 623 SKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 116/258 (44%), Gaps = 8/258 (3%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LID + +      A  +F  +  K V SWT M+  F++N + ++    F  ML  G+   
Sbjct: 16  LIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRGMLLQGINPG 75

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           +  +   LSAC     +  G  +   I       +  + TALV +Y K G+   A+ VF 
Sbjct: 76  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFL 135

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               +D++ W+AM+   A +G   +A+  F++M   G  P+    ++ L AC   G ++ 
Sbjct: 136 RMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLRS 195

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475
                  +     I+  V   T +VNL  + G+     + +  +F ++++   K+  ++ 
Sbjct: 196 GALMHQRVEAQG-IQSGVVVGTALVNLYGKCGR----IEAAAEAFGQIVE---KNVVAWS 247

Query: 476 LLSNIYAAEGRWKDVARV 493
            +S  YA   R +D  RV
Sbjct: 248 AISAAYARNDRNRDAIRV 265



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 12/199 (6%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDH 88
           ++L+   ++   L  + +  ++H    +  I + ++   +L         I+ A   F  
Sbjct: 178 VTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQ 237

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              KN+  ++ +    A N   +  I     M    + PN  T+  V  + A+++ L  G
Sbjct: 238 IVEKNVVAWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQG 297

Query: 149 RGLHCLI--VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           R +H  I  +  G+E D +V   L +MY + G    A  +FD+    +    ++LWN LI
Sbjct: 298 RRIHERIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLD----LVLWNSLI 353

Query: 207 NGCSKIGYLRKAVELFGMM 225
              ++ G   KA+ELF  M
Sbjct: 354 ATNAQHGQTEKALELFERM 372


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 194/577 (33%), Positives = 308/577 (53%), Gaps = 65/577 (11%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N ++ G   + + +  +  F  +  L   P+++T   V  SV    +L++GR +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVVMFQKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G+  D  V   + DMY + G   G   +F++           + N  I G S+ 
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAG----VCNAYITGLSRN 331

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF-EQMPEKGVVSWTAMINGF 271
           G + KA+E+F                            ELF EQ  E  VVSWT++I G 
Sbjct: 332 GLVDKALEMF----------------------------ELFKEQTMELNVVSWTSIIAGC 363

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           +QNG+  +AL +F +M  AGV+ N  T+ S L AC  + AL  G   H +          
Sbjct: 364 AQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +G+AL+DMYAKCG I  + +VF     K+L+ W +++ G ++HG+ ++ +  F+ +M +
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
             +PD   F ++L+AC   G       +F  M  +Y I+P ++H++ +VNLL R G+  +
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 452 GYQ------------------NS---QNSFT-------KLLQLKPKHPSSYVLLSNIYAA 483
            Y                   NS   QN+         KL  L+P++P +YVLLSNIYAA
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
           +G W +V  +R  M+   +KK+PG S+I+V   V+   AG   H    +I  K+++I   
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKE 663

Query: 542 AREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            R+ G+ P  ++ LH+++E E+E+ L  HSEKLA+ FGL+ T  GT ++++K L ICGDC
Sbjct: 664 MRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDC 723

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           H+++K+ S  + REI +RDT RFH+FKDG CSC D+W
Sbjct: 724 HAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 117/497 (23%), Positives = 216/497 (43%), Gaps = 57/497 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q HA+I+         I+ +LI+S S +   + A  +        ++ F+ LI  L +  
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAK 95

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            F   I  F  M    + P+    P + K  A LS   +G+ +HC+   SG++ DAFV+ 
Sbjct: 96  LFTQSIGVFSRMFSHGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQG 155

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            +  MY++ G+   A KVFD                                    M  K
Sbjct: 156 SMFHMYMRCGRMGDARKVFDR-----------------------------------MSDK 180

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMF 284
           +V +  +L+  + RKG L++   +  +M   G    +VSW  +++GF+++G  ++A+ MF
Sbjct: 181 DVVTCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMF 240

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            ++   G   +  TV S L +      L  G  +H Y+          + +A++DMY K 
Sbjct: 241 QKIHHLGFCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKS 300

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G++     +F + +  +     A I GL+ +G  ++A++ F+       E +   + +I+
Sbjct: 301 GHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSII 360

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ-DSQGYQNSQNSF-TK 462
             C  +G+   AL  F  M+    ++P   +H  + ++L   G   + G+  S + F  +
Sbjct: 361 AGCAQNGKDIEALELFREMQV-AGVKP---NHVTIPSMLPACGNIAALGHGRSTHGFAVR 416

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           +  L   H  S ++  ++YA  GR      V  +M  +++     W+ + +NG       
Sbjct: 417 VHLLDNVHVGSALI--DMYAKCGRINLSQIVFNMMPTKNLV---CWNSL-MNGF------ 464

Query: 523 GGHKLAKEIHSKLEDIM 539
             H  AKE+ S  E +M
Sbjct: 465 SMHGKAKEVMSIFESLM 481



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/253 (23%), Positives = 115/253 (45%), Gaps = 19/253 (7%)

Query: 50  IHAQIILHNLFA--SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI----FNVLIRG 103
           ++  I L N F    + +    I+  S +  +D AL +F+ F  + + +    +  +I G
Sbjct: 303 VYGIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAG 362

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            A+N      +  F  M    V+PN +T P +  +  +++ L  GR  H   V+  +  +
Sbjct: 363 CAQNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDN 422

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
             V   L DMY + G+   +  VF+  P KN    ++ WN L+NG S  G  ++ + +F 
Sbjct: 423 VHVGSALIDMYAKCGRINLSQIVFNMMPTKN----LVCWNSLMNGFSMHGKAKEVMSIFE 478

Query: 224 MMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQN 274
            +     K +  S+ SL+    + G   +  + F+ M E+  +      ++ M+N   + 
Sbjct: 479 SLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRA 538

Query: 275 GEAEKALAMFFQM 287
           G+ ++A  +  +M
Sbjct: 539 GKLQEAYDLIKEM 551



 Score = 40.0 bits (92), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 44/234 (18%), Positives = 98/234 (41%), Gaps = 18/234 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R  H   +  +L  +  + + LI   +    I+ +  +F+    KNL  +N L+ G + +
Sbjct: 408 RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMH 467

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +S F  ++R  ++P+ +++  +  +   + L   G     ++ +   EY    R
Sbjct: 468 GKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSE---EYGIKPR 524

Query: 168 VH----LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVE 220
           +     + ++  + GK + A+ +  E P +  S    +W  L+N C   + +     A E
Sbjct: 525 LEHYSCMVNLLGRAGKLQEAYDLIKEMPFEPDS---CVWGALLNSCRLQNNVDLAEIAAE 581

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
               +  +N  ++V L + +  KG   +   +  +M   G+      SW  + N
Sbjct: 582 KLFHLEPENPGTYVLLSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVKN 635


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 196/669 (29%), Positives = 338/669 (50%), Gaps = 87/669 (13%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K +++ S+ I+  +I+    S  +  Q +++H   I +  F    +   LI + +    +
Sbjct: 264 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLM 323

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A+ +F+    K++  +N ++ G +++ +F++    F  M + ++  + +T+  V    
Sbjct: 324 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAG- 382

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                                             Y Q G +  A  +F +        + 
Sbjct: 383 ----------------------------------YSQRGCSHEALNLFRQMIFSGSLPNC 408

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPK--------------KNVASWVSLIDGFMRKGD 245
           +    +++ C+ +G   +  E+     K              +++  + +LID + +   
Sbjct: 409 VTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 468

Query: 246 LKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVS 301
            K A  +F+ +P  E+ VV+WT MI G +Q G++  AL +F +M+    GV  N +T+  
Sbjct: 469 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 528

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKE 359
            L ACA + A+  G ++H Y+  +      A  +   L+DMY+KCG+++ A  VF    +
Sbjct: 529 ILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQ 588

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           K  ++WT+M+ G  +HGR  +A+  F KM  +G  PD   FL +L AC + G V   L++
Sbjct: 589 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 648

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------------ 455
           FDSM  DY + P  +H+   ++LL+R G+  + ++                         
Sbjct: 649 FDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHS 708

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               ++++  KL+++  ++  SY L+SNIYA  GRWKDVAR+R LM++  IKK PG S++
Sbjct: 709 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 768

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGC 568
           +       F  G   H L+ +I++ LE ++   +  GY+P T + LH++ +EEK   L  
Sbjct: 769 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 828

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLALA+GL+ T+PG  I+I K L +CGDCHS   Y SKI   EIV+RD +RFH+FK+
Sbjct: 829 HSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 888

Query: 628 GTCSCRDYW 636
           G+CSC  YW
Sbjct: 889 GSCSCGGYW 897



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 134/502 (26%), Positives = 211/502 (42%), Gaps = 115/502 (22%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNL-------------------FASSR-ITT 67
           ++  +H  SL+    S   + QIH QII   L                   F S R + T
Sbjct: 41  DVYPSHFASLLKECKSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGT 100

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            +++S     + DYAL + +  TP     +N+LIR   +     S I+    MLR   RP
Sbjct: 101 GVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRP 160

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +  T P V K+   L     G   H LI  +G E + F+   L  MY + G    A  +F
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----------PKKNVASWV--- 234
           DE  ++   + V+ WN +++   K      A++LF  M           + ++ S V   
Sbjct: 221 DEITQRGI-DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNIL 279

Query: 235 --------------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                                           +LID + + G ++ A ++F  M  K VV
Sbjct: 280 PACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVV 339

Query: 263 SWTAMINGFSQNGEAE-----------------------------------KALAMFFQM 287
           SW AM+ G+SQ+G  E                                   +AL +F QM
Sbjct: 340 SWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQM 399

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SC-----NDFGLKGA---IGTAL 337
           + +G   N  T++S LSACA +GA   G  +H Y   +C     NDFG +     +  AL
Sbjct: 400 IFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNAL 459

Query: 338 VDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GT 393
           +DMY+KC + +AA  +F +   +E++++TWT MI G A +G    A++ F +M+    G 
Sbjct: 460 IDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGV 519

Query: 394 EPDGTVFLAILTACWYSGQVKL 415
            P+      IL AC +   +++
Sbjct: 520 APNAYTISCILMACAHLAAIRI 541


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 189/559 (33%), Positives = 296/559 (52%), Gaps = 76/559 (13%)

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           R +H  +V +G   D  +   L   Y Q      A+ +FD    ++       W+V++ G
Sbjct: 20  RQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKT----WSVMVGG 75

Query: 209 CSKIGYLRKAVELF------GMMPKKNVASWV---------------------------- 234
            +K G        F      G+ P      +V                            
Sbjct: 76  FAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSD 135

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                SL+D + +   ++ A  LFE+M  K +V+WT MI  ++ +  A ++L +F +M +
Sbjct: 136 HFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYA-DCNAYESLVLFDRMRE 194

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            GV  +   +V+ ++ACAK+GA+      ++YI  N F L   +GTA++DMYAKCG++E+
Sbjct: 195 EGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVES 254

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  VF   KEK++++W+AMI     HGR + AI  F  M+     P+   F+++L AC +
Sbjct: 255 AREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSH 314

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------- 452
           +G ++  L FF+SM  ++ + P VKH+T +V+LL R G+  +                  
Sbjct: 315 AGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWS 374

Query: 453 -----------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                       + ++ +   LL+L+P++P  YVLLSNIYA  G+W+ VA+ R +M +R 
Sbjct: 375 ALLGACRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRK 434

Query: 502 IKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
           +KK PGW++IEV+   ++F  G   H  +KEI+  L  ++      GY+P T++VL +++
Sbjct: 435 LKKIPGWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVE 494

Query: 560 EE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           EE K+E L  HSEKLA+AFGLI    G  I+I K L +CGDCH+  K  S I +R I++R
Sbjct: 495 EEVKQEMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVR 554

Query: 619 DT-RFHYFKDGTCSCRDYW 636
           D  RFH+F DGTCSC DYW
Sbjct: 555 DANRFHHFNDGTCSCGDYW 573



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 188/384 (48%), Gaps = 38/384 (9%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           I L+    +   +RQ+HA ++ +       I  +L+ + + HK+ID A S+FD  T ++ 
Sbjct: 7   IDLLLRCRNVFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDS 66

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
             ++V++ G A+      C + F  +LR  V P+  T PFV ++    + L +GR +H +
Sbjct: 67  KTWSVMVGGFAKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDV 126

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK---------------NKSESV 199
           ++K G+  D FV   L DMY +      A ++F+    K               N  ES+
Sbjct: 127 VLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYESL 186

Query: 200 LLWN---------------VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGF 240
           +L++                ++N C+K+G + +A      + +     +V    ++ID +
Sbjct: 187 VLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMY 246

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + G ++ A E+F++M EK V+SW+AMI  +  +G  + A+ +F  ML   +  N  T V
Sbjct: 247 AKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFV 306

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGET 357
           S L AC+  G +E G+R  N +   +  ++  +   T +VD+  + G + EA  L+   T
Sbjct: 307 SLLYACSHAGLIEEGLRFFNSMW-EEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMT 365

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQA 381
            EKD   W+A++    IH + E A
Sbjct: 366 VEKDERLWSALLGACRIHSKMELA 389


>gi|357121594|ref|XP_003562503.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Brachypodium distachyon]
          Length = 544

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 190/493 (38%), Positives = 277/493 (56%), Gaps = 34/493 (6%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y   G+   A +VFD  P ++     + +N +I+G +  G +  A  LF  +      +W
Sbjct: 56  YCSAGRVTDARRVFDGMPRRD----TVSFNSMIHGYAVSGDVGSAQRLFERVLAPTPVTW 111

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            S++ GF R GD++ A  +FE+MPE+ +VSW AMI+G   N    +AL +F  M++ G  
Sbjct: 112 TSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLPVEALCLFRWMMEEGFV 171

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  TVVS LSAC   GALE G  VH ++          +GTALVDMYAKCG +E A  V
Sbjct: 172 PNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTALVDMYAKCGAVELALEV 231

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQ 412
           F   + ++  TW AMI GLA++G   +A+  F++M  +GT  PD   F+ +L AC ++G 
Sbjct: 232 FTGLRARNTCTWNAMINGLAMNGYSAKALDMFRQMELNGTVAPDEVTFVGVLLACSHAGF 291

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------- 452
           V      F ++   Y +E  ++H+  +V+LL+R G   +                     
Sbjct: 292 VDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEAHKLITEMPMKPDVVVWRALL 351

Query: 453 -----YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                ++N + +   + +++      +VLLSN+YAA GRW  V  VR  M+ + I+K PG
Sbjct: 352 GGCRLHKNVKMAENVISEMEATCSGDHVLLSNLYAAVGRWNGVEDVRRTMRSKGIEKIPG 411

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEE 564
            S +E++G +H F +G   H    +IH+KL +I    ++ GY+  T  V ++I+ EEKE+
Sbjct: 412 CSSVEMDGSIHEFISGDKSHPSYDDIHAKLIEIGGRMQQHGYVTETAEVFYDIEDEEKEQ 471

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
           ALG HSEKLA+AFGLI   P  TI+IVK L  C DCHS  K  SKI  REIV+RD  RFH
Sbjct: 472 ALGYHSEKLAIAFGLIGGPPEATIRIVKNLRFCTDCHSFAKLVSKIYHREIVVRDRARFH 531

Query: 624 YFKDGTCSCRDYW 636
           +F+ G CSC D+W
Sbjct: 532 HFRGGACSCNDFW 544



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 105/262 (40%), Gaps = 47/262 (17%)

Query: 52  AQIILHNLFASSRIT-TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF 110
           AQ +   + A + +T T +++       ++ A  +F+    ++L  +N +I G   N   
Sbjct: 96  AQRLFERVLAPTPVTWTSMVAGFCRAGDVESARRVFEEMPERDLVSWNAMISGCVGNRLP 155

Query: 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL 170
              +  F +M+     PNR T   V  +      L  G+ +H  + K  + +D F+   L
Sbjct: 156 VEALCLFRWMMEEGFVPNRGTVVSVLSACTGAGALETGKWVHVFVEKKRLRWDEFLGTAL 215

Query: 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----- 225
            DMY + G    A +VF     +N       WN +ING +  GY  KA+++F  M     
Sbjct: 216 VDMYAKCGAVELALEVFTGLRARN----TCTWNAMINGLAMNGYSAKALDMFRQMELNGT 271

Query: 226 -------------------------------PKKN-----VASWVSLIDGFMRKGDLKKA 249
                                          P+K      +  +  ++D   R G L++A
Sbjct: 272 VAPDEVTFVGVLLACSHAGFVDAGKEHFYTIPQKYGVELILEHYACMVDLLARSGHLQEA 331

Query: 250 GELFEQMPEK-GVVSWTAMING 270
            +L  +MP K  VV W A++ G
Sbjct: 332 HKLITEMPMKPDVVVWRALLGG 353


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 189/542 (34%), Positives = 286/542 (52%), Gaps = 74/542 (13%)

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           V Y+  +  H A      G   GA ++F   P ++    V  WN +++G SK G + +A 
Sbjct: 81  VSYNTLLLCHFAS-----GDADGARRLFASMPVRD----VASWNTMVSGLSKSGAVEEAK 131

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE---------------------------- 251
            +F  MP +N  SW +++ GF   GD+  A E                            
Sbjct: 132 VVFLAMPVRNSVSWNAMVSGFACSGDMSTAEEWFRNAPEKEDAVLWTAMVSGYMDIGNVV 191

Query: 252 ----LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSAC 306
                FE MP + +VSW A++ G+ +N  A+ AL +F  M+ +A V+ N  T+ S L  C
Sbjct: 192 KAIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           + + AL  G ++H +           +GT+LV MY KCG++ +A ++FGE   +D++ W 
Sbjct: 252 SNLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWN 311

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI G A HG  ++AI  F++M   G EP+   F+ +LTAC ++G     +  F+ M+  
Sbjct: 312 AMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGMQEL 371

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQN 458
           Y IEP V H++ +V+LL R G+  +                          Y+N   ++ 
Sbjct: 372 YGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSMPFEPHPSAYGTLLAACRVYKNLEFAEL 431

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  KL++  P+   +YV L+NIYA   +W DV+RVR  M+  ++ K PG+S+IE+ G +H
Sbjct: 432 AAGKLIEKDPQSAGAYVQLANIYAVANQWDDVSRVRRWMKDNTVVKTPGYSWIEIKGVLH 491

Query: 519 RFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLAL 575
            F +    H     IH KL  +    +E GY+P  ++VLH++ E  K + L  HSEKLA+
Sbjct: 492 EFRSNDRLHPQLYLIHEKLGQLAERMKEMGYVPDLDFVLHDVDETMKVQMLMRHSEKLAI 551

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGLI T  G T++I K L +CGDCH+  K  S I  REI+LRD TRFH+F+ G CSC D
Sbjct: 552 AFGLISTAHGMTLRIFKNLRVCGDCHNAAKVISMIEDREIILRDTTRFHHFRGGHCSCDD 611

Query: 635 YW 636
           YW
Sbjct: 612 YW 613



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 64/236 (27%), Positives = 108/236 (45%), Gaps = 15/236 (6%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELFGMMPKKNVASW 233
           V+ G   GA + F  TP K  +     +N L+ G ++  G L  A  LF  +P  +V S+
Sbjct: 28  VRHGDLAGAEEAFVSTPRKTTAT----YNCLLAGYARAPGRLADARHLFDRIPTPDVVSY 83

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGV 292
            +L+      GD   A  LF  MP + V SW  M++G S++G  E+A  +F  M +   V
Sbjct: 84  NTLLLCHFASGDADGARRLFASMPVRDVASWNTMVSGLSKSGAVEEAKVVFLAMPVRNSV 143

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             N   +VS  +    +   E   R  N     D      + TA+V  Y   GN+  A  
Sbjct: 144 SWN--AMVSGFACSGDMSTAEEWFR--NAPEKED----AVLWTAMVSGYMDIGNVVKAIK 195

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTAC 407
            F     ++L++W A++ G   +   + A++ F+ M+  +  +P+ +   ++L  C
Sbjct: 196 YFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGC 251



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 99/216 (45%), Gaps = 14/216 (6%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVA 140
           A+  F+    +NL  +N ++ G  +NSH    +  F  M+R  +V+PN  T   V    +
Sbjct: 193 AIKYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCS 252

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           +LS L  G+ +H   +K  +  +  V   L  MY + G    A  +F E   ++    V+
Sbjct: 253 NLSALGFGKQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRD----VV 308

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLI---DGFMRKGDLKKAGELFEQM 256
            WN +I+G ++ G  ++A+ LF  M  + V  +W++ +      +  G      + FE M
Sbjct: 309 AWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVVVLTACIHTGLCDFGIQCFEGM 368

Query: 257 P-----EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                 E  V  ++ M++   + G+ E+A+     M
Sbjct: 369 QELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIRSM 404


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 205/643 (31%), Positives = 329/643 (51%), Gaps = 75/643 (11%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + + LI + SL  ++ +A  +FD    K+   +  ++   +EN   +  ++ F  M    
Sbjct: 187 VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAG 246

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            +PN      V K+   LS   LG+G+H   VK+  + +  V   L DMY + G    A 
Sbjct: 247 AKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDAR 306

Query: 185 KVFDETPEKNKSESVLLWNVLIN-----------------------------------GC 209
            VF+  P     + V+LW+ LI+                                    C
Sbjct: 307 TVFEIIPH----DDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQAC 362

Query: 210 SKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           + + +L    ++  ++ K    S +    +L+D + +  +++ + E+F  + +   VSW 
Sbjct: 363 ANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWN 422

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            +I G+ Q+G AE AL++F +M  A V +   T  S L ACA   +++  V++H+ I  +
Sbjct: 423 TIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKS 482

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     +  +L+D YAKCG I  A  VF    + D+++W A+I G A+HGR   A++ F
Sbjct: 483 TFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELF 542

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M  S T+P+   F+A+L+ C  +G V   L+ F+SM  D+ I+PS+ H+T +V LL R
Sbjct: 543 NRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGR 602

Query: 446 VGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSYVLL 477
            G+ +                           ++N    + S  K+L+++P+  ++YVLL
Sbjct: 603 AGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLL 662

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
           SN+YAA G    VA +R  M+   +KK+ G S++E+ G VH F  G   H   + I++ L
Sbjct: 663 SNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAML 722

Query: 536 EDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E +   A  +GY+P    VLH++ +EEK   L  HSE+LALA+GL  T PG  I+I+K L
Sbjct: 723 EWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNL 782

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             C DCH++ K  SKI QREIV+RD  RFH+F +G CSC DYW
Sbjct: 783 RSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 106/464 (22%), Positives = 193/464 (41%), Gaps = 53/464 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N+  F  L++G A    F+     F  + R     N      + K + +
Sbjct: 103 ARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVA 162

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +    L   +H    K G + +AFV   L D Y   G    A  VFD    K+     + 
Sbjct: 163 MDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKD----AVT 218

Query: 202 WNVLINGCSKIGYLRKAVELFGMM------PKKNVASWV--------------------- 234
           W  +++  S+      A+  F  M      P   V + V                     
Sbjct: 219 WTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAV 278

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       +L+D + + G ++ A  +FE +P   V+ W+ +I+ ++Q+ + E+A  
Sbjct: 279 KTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFE 338

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MF +M+ + V  N+F++   L ACA V  L+ G ++HN +    +  +  +G AL+D+YA
Sbjct: 339 MFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYA 398

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KC N+E +  +F   ++ + ++W  +I G    G  E A+  F++M  +        F +
Sbjct: 399 KCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSS 458

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
           +L AC  +  +K       +++    IE S   + T+V N L          +++   F 
Sbjct: 459 VLRACANTASIK------HTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFE 512

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            ++Q       S+  + + YA  GR  D   +   M +   K +
Sbjct: 513 SIIQCD---VVSWNAIISGYALHGRATDALELFNRMNKSDTKPN 553



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 84/171 (49%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L++ + + G L  A  LF+ MPE+ +VS+  ++ G++  G  E+A  +F ++   G   N
Sbjct: 90  LLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVN 149

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            F + + L     + A      +H             +G++L+D Y+ CG +  A  VF 
Sbjct: 150 HFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFD 209

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
               KD +TWTAM+   + +   E A+  F KM  +G +P+  V  ++L A
Sbjct: 210 GIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKA 260



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 56/295 (18%), Positives = 120/295 (40%), Gaps = 25/295 (8%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A++    ++++H  S  +T + ++    ++ S K   QIH+ I        + +   LI 
Sbjct: 437 ALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLID 496

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           + +    I  AL +F+     ++  +N +I G A +      +  F  M +   +PN +T
Sbjct: 497 TYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVT 556

Query: 132 YPFVSKSVASLSLLSLGRGLHCLI-----VKSGVE-YDAFVRVHLADMYVQLGKTRGAFK 185
           +  +     S  L++ G  L   +     +K  ++ Y   VR     +  + G+   A K
Sbjct: 557 FVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVR-----LLGRAGRLNDALK 611

Query: 186 VFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
              + P    + S ++W  L++ C     +   + + E    +  ++  ++V L + +  
Sbjct: 612 FIGDIP---STPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAA 668

Query: 243 KGDLKKAGELFEQMPEKGV-----VSWTAM---INGFSQNGEAEKALAMFFQMLD 289
            G L +   L + M   GV     +SW  +   ++ FS        + +   ML+
Sbjct: 669 AGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMRIINAMLE 723


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 213/676 (31%), Positives = 335/676 (49%), Gaps = 77/676 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +++    S   +  R++HA ++             L+   S    I  A  +F      +
Sbjct: 208 VVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTD 267

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG--RGL 151
           +  +N  I G   + H Q  +   + M    + PN  T   + K+ A     +    R +
Sbjct: 268 VVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQI 327

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  ++K+  + D ++ V L DMY + G    A KVF+  P K+    +LLWN LI+GCS 
Sbjct: 328 HGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKD----LLLWNALISGCSH 383

Query: 212 IGYLRKAVELFGMMPK--------------KNVASWVS---------------------- 235
            G   +++ LF  M K              K+ AS  +                      
Sbjct: 384 GGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHV 443

Query: 236 ---LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
              LID + +   L+ A ++FE+     ++++T+MI   SQ    E A+ +F +ML  G+
Sbjct: 444 VNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGL 503

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             + F + S L+ACA + A E G +VH ++    F      G ALV  YAKCG+IE A L
Sbjct: 504 EPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADL 563

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
            F    +K +++W+AMI GLA HG  ++A+  F++M+     P+     ++L AC ++G 
Sbjct: 564 AFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGL 623

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNSQN------------ 458
           V  A  +F SM+  + I+ + +H++ +++LL R G+  D+    NS              
Sbjct: 624 VDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALL 683

Query: 459 --------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                         +  KL  L+P+   ++VLL+N YA+ G W +VA+VR LM+   +KK
Sbjct: 684 AASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKK 743

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEE 561
           +P  S++E+   VH F  G   H  A++I++KLE++     + GY+P  E  LH++ K E
Sbjct: 744 EPAMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSE 803

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE  L  HSE+LA+AF LI T  G  I++ K L IC DCH   K+ SKI  REI++RD  
Sbjct: 804 KELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDIN 863

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+F DG CSC DYW
Sbjct: 864 RFHHFSDGACSCGDYW 879



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 174/401 (43%), Gaps = 46/401 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAEN 107
           Q+HA  +   L     +   L++       +D A  +FD     +N   +N ++    +N
Sbjct: 121 QVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKN 180

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M+   VRPN   +  V  +      L  GR +H ++V++G + D F  
Sbjct: 181 DRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTA 240

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY +LG    A  VF + P+ +    V+ WN  I+GC   G+ + A+EL      
Sbjct: 241 NALVDMYSKLGDIHMAALVFGKVPKTD----VVSWNAFISGCVLHGHDQHALELLLQMKS 296

Query: 223 -GMMPKKNVAS-----------------------------------WVSLIDGFMRKGDL 246
            G++P     S                                    V+L+D + + G L
Sbjct: 297 SGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLL 356

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             A ++FE +P K ++ W A+I+G S  G   ++L++F +M   G   N  T+ + L + 
Sbjct: 357 DDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKST 416

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A + A+    +VH       F     +   L+D Y KC  +  A+ VF E    +++ +T
Sbjct: 417 ASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFT 476

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +MI  L+     E AI+ F +M+  G EPD  V  ++L AC
Sbjct: 477 SMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 116/405 (28%), Positives = 177/405 (43%), Gaps = 66/405 (16%)

Query: 57  HNLFASSRITTQLISSASLHKSIDYALS-------------IFDHFTPKNLHI-FNVLIR 102
            +LF  + I   L+ S  LH   ++ LS             +FD  TP   H+ ++ L+ 
Sbjct: 18  QSLFLGAHIHAHLLKSGLLHAFRNHLLSFYSKCRLPGSARRVFDE-TPDPCHVSWSSLVT 76

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
             + N+  +  ++ F  M    VR N    P V K      L   G  +H + V +G+  
Sbjct: 77  AYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGL---GVQVHAVAVSTGLSG 133

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D FV   L  MY   G    A +VFDE      + S   WN +++   K      AVELF
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVS---WNGMMSAFVKNDRCSDAVELF 190

Query: 223 GMMP---------------------------------------KKNVASWVSLIDGFMRK 243
           G M                                         K+V +  +L+D + + 
Sbjct: 191 GEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKL 250

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           GD+  A  +F ++P+  VVSW A I+G   +G  + AL +  QM  +G+  N FT+ S L
Sbjct: 251 GDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSIL 310

Query: 304 SACAKVGALEAGV--RVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            ACA  GA    +  ++H ++  +C D      IG ALVDMYAK G ++ A  VF     
Sbjct: 311 KACAGAGAGAFALGRQIHGFMIKACADS--DDYIGVALVDMYAKYGLLDDARKVFEWIPR 368

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           KDLL W A+I G +  G + +++  F +M   G++ + T   A+L
Sbjct: 369 KDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVL 413



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/312 (27%), Positives = 144/312 (46%), Gaps = 50/312 (16%)

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           P +++  A+ SL  LG  +H  ++KSG+ + AF R HL   Y +      A +VFDETP+
Sbjct: 9   PLLTRYAATQSLF-LGAHIHAHLLKSGLLH-AF-RNHLLSFYSKCRLPGSARRVFDETPD 65

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA--------------------- 231
                  + W+ L+   S     R+A+  F  M  + V                      
Sbjct: 66  PCH----VSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQ 121

Query: 232 ------------------SWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFS 272
                             + V++  GF   G + +A  +F++   ++  VSW  M++ F 
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGF---GFVDEARRVFDEAARDRNAVSWNGMMSAFV 178

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           +N     A+ +F +M+ +GVR N+F     ++AC     LEAG +VH  +    +     
Sbjct: 179 KNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVF 238

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
              ALVDMY+K G+I  A+LVFG+  + D+++W A I G  +HG  + A++   +M  SG
Sbjct: 239 TANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSG 298

Query: 393 TEPDGTVFLAIL 404
             P+     +IL
Sbjct: 299 LVPNVFTLSSIL 310



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 83/162 (51%), Gaps = 8/162 (4%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +F++ P+   VSW++++  +S N    +ALA F  M   GVR N+F +   L  CA 
Sbjct: 56  ARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK-CAP 114

Query: 309 VGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGE-TKEKDLLTW 365
              L  GV+VH        GL G I    ALV MY   G ++ A  VF E  ++++ ++W
Sbjct: 115 DAGL--GVQVHAVAVST--GLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSW 170

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             M+     + R   A++ F +M++SG  P+   F  ++ AC
Sbjct: 171 NGMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNAC 212



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 72/309 (23%), Positives = 131/309 (42%), Gaps = 31/309 (10%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSID 80
           K  ++I  T + +++ S+ S + +    Q+HA        + S +   LI S      + 
Sbjct: 399 KEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLR 458

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
           YA  +F+  +  N+  F  +I  L++  H +  I  F+ MLR  + P+      +  + A
Sbjct: 459 YANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACA 518

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           SLS    G+ +H  ++K     D F    L   Y + G    A   F   P+K     V+
Sbjct: 519 SLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKG----VV 574

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
            W+ +I G ++ G+ ++A+++F  M  + +A    +  S++      G + +A   F  M
Sbjct: 575 SWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSM 634

Query: 257 PEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV-G 310
            E   +      ++ MI+   + G+ + A+ +   M                 A A V G
Sbjct: 635 KEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSM--------------PFEANAAVWG 680

Query: 311 ALEAGVRVH 319
           AL A  RVH
Sbjct: 681 ALLAASRVH 689


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  331 bits (849), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 195/584 (33%), Positives = 303/584 (51%), Gaps = 76/584 (13%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           + RP+  T+     + A L  L  G  +      +G + D FV   L  +Y + G    A
Sbjct: 103 AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDA 162

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226
            KVF   P +++    + W+ ++ G    G    A++++  M                  
Sbjct: 163 VKVFVRMPRRDR----VTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQA 218

Query: 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                 + +V +  SL+D + + G L  A  +F  M  +  VSW
Sbjct: 219 CTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSW 278

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           +AMI+GF+QNG++++AL +F  M  +G++ +   +VSAL AC+ +G L+ G  VH +I  
Sbjct: 279 SAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFI-V 337

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             F     +GTA +DMY+KCG++ +A ++F    ++DL+ W AMI     HGR + A+  
Sbjct: 338 RRFDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTL 397

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F++M  +G  PD   F ++L+A  +SG V+    +F  M   + I P+ KH+  +V+LL+
Sbjct: 398 FQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLA 457

Query: 445 RVGQ----------------------------DSQGYQNSQNSFTKLLQLKPKHPSSYVL 476
           R G                             +++  +  ++    +L+L+P       L
Sbjct: 458 RSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLAL 517

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG--HVHRFEAGGHKLAKEIHSK 534
           +SN+YAA  +W  V +VR LM+    KK PG S IE+ G  HV   E   H   +EI SK
Sbjct: 518 VSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSK 577

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           +  +    R+ GY+P TE+V H+++EE KE+ L  HSE+LA+AFGL+ T PGT + I+K 
Sbjct: 578 VAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKN 637

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L +CGDCH  +KY SKI+ REIV+RD  RFH+FKDG CSCRDYW
Sbjct: 638 LRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 135/256 (52%), Gaps = 7/256 (2%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL----FGMMPKKNVASW 233
           G    A +VF   P   + +S   + + ++ C+++G LR    +    F    K +V   
Sbjct: 88  GSPASALRVFRALPPAARPDSTT-FTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVC 146

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            SL+  + R G +  A ++F +MP +  V+W+ M+ GF   G+   A+ M+ +M + GV+
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVK 206

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            ++  ++  + AC     +  G  VH ++  +   +     T+LVDMYAK G ++ A  V
Sbjct: 207 GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRV 266

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           FG    ++ ++W+AMI G A +G+ ++A++ F+ M  SG +PD    ++ L AC   G +
Sbjct: 267 FGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFL 326

Query: 414 KL--ALNFFDSMRFDY 427
           KL  +++ F   RFD+
Sbjct: 327 KLGRSVHGFIVRRFDF 342



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/318 (19%), Positives = 129/318 (40%), Gaps = 51/318 (16%)

Query: 31  ETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           E  +I +I +  + + +R    +H  ++ H +       T L+   + +  +D A  +F 
Sbjct: 209 EVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFG 268

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               +N   ++ +I G A+N      +  F  M    ++P+         + +++  L L
Sbjct: 269 LMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKL 328

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H  IV+   +++  +     DMY + G    A  +F+   +++    ++LWN +I 
Sbjct: 329 GRSVHGFIVRR-FDFNCILGTAAIDMYSKCGSLASAQMLFNMISDRD----LILWNAMIA 383

Query: 208 GCSKIGYLRKAVELF------GMMPKKNVAS----------------------------- 232
            C   G  + A+ LF      GM P     +                             
Sbjct: 384 CCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNHFKIT 443

Query: 233 -----WVSLIDGFMRKGDLKKAGELFEQM-PEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                +V L+D   R G +++A +L   M  E  V  W A+++G   N + E   ++   
Sbjct: 444 PAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGESIADN 503

Query: 287 MLDAGVRANDFTVVSALS 304
           +L+  ++ +D  V++ +S
Sbjct: 504 ILE--LQPDDVGVLALVS 519


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 207/684 (30%), Positives = 353/684 (51%), Gaps = 76/684 (11%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP + +T   ++S   S  +  + +Q+H+ +I   + +   I   L+        I+ A 
Sbjct: 311 KP-DCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH 369

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
             F     +N+ ++NV++    +  +       F+ M    + PN+ TYP + ++  SL 
Sbjct: 370 EYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG  +H  ++KSG +++ +V   L DMY + G+   A  +     ++ + E V+ W 
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL----QRLREEDVVSWT 485

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV----------------------------ASWVS 235
            +I G ++     +A++LF  M  + +                             S++S
Sbjct: 486 AMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYIS 545

Query: 236 -----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                      L+  + R G  + A   FE++  K  +SW A+I+GF+Q+G  E+AL +F
Sbjct: 546 GYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVF 605

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            QM  AGV AN FT  SA+SA A    ++ G ++H  +    +  +      L+ +Y+KC
Sbjct: 606 SQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKC 665

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G+IE A   F E  EK++++W AMI G + HG   +A+  F++M   G  P+   F+ +L
Sbjct: 666 GSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVL 725

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR---------------VGQD 449
           +AC + G V   L++F SM  ++ + P  +H+  VV+LL R               +  D
Sbjct: 726 SACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPD 785

Query: 450 SQGYQNSQNSFT-------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
           +  ++   ++ T              LL+L+P+  ++YVLLSN+YA  G+W    R R +
Sbjct: 786 AMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQM 845

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           M+ R +KK+PG S+IEV   +H F  G   H LA++I+  ++D+   A E GY+     +
Sbjct: 846 MKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNL 905

Query: 555 LHNIKEEKEEALG-CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           L+++++E+++     HSEKLA+AFGL+  T    I+++K L +C DCH+ +K+ SKIS R
Sbjct: 906 LNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNR 965

Query: 614 EIVLRDT-RFHYFKDGTCSCRDYW 636
            IV+RD  RFH+F+ G CSC+DYW
Sbjct: 966 AIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 123/502 (24%), Positives = 224/502 (44%), Gaps = 61/502 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            QIHA+II H   +S  +   LI   S +  +D A  +F+    K+   +  +I GL++N
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M + +V P    +  V  +   + L  LG  LH  IVK G+  + FV 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
             L  +Y + G    A ++F +   +++    + +N LI+G ++ G+  +A++LF  M  
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDR----ISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 226 ------------------------PKKNVASWV-------------SLIDGFMRKGDLKK 248
                                     K + S+V             SL+D +++  D++ 
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIET 367

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E F     + VV W  M+  + Q G   ++  +F QM   G+  N +T  S L  C  
Sbjct: 368 AHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL+ G ++H  +  + F     + + L+DMYAK G ++ A  +    +E+D+++WTAM
Sbjct: 428 LGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAM 487

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC-----WYSGQVKLALNFFDSM 423
           I G   H  + +A++ F++M   G   D   F + ++AC        GQ   A ++    
Sbjct: 488 IAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGY 547

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
             D  I         +V+L +R G+       +Q+++    ++  K   S+  L + +A 
Sbjct: 548 SEDLSI------GNALVSLYARCGR-------AQDAYLAFEKIDAKDNISWNALISGFAQ 594

Query: 484 EGRWKDVARVRTLMQRRSIKKD 505
            G  ++  +V + M +  ++ +
Sbjct: 595 SGHCEEALQVFSQMNQAGVEAN 616



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 151/328 (46%), Gaps = 44/328 (13%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M    +R N  TY ++ +   +   L   + LH  I KSG + +  +   L D+Y+  G+
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS---- 235
              A K+FD+ P  N S     WN +I+G        + + LF +M  +NV    S    
Sbjct: 61  VDNAIKLFDDIPSSNVS----FWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFAS 116

Query: 236 ------------------------------------LIDGFMRKGDLKKAGELFEQMPEK 259
                                               LID + + G +  A  +FE++  K
Sbjct: 117 VLRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLK 176

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
             VSW AMI+G SQNG  ++A+ +F QM  + V    +   S LSAC K+   + G ++H
Sbjct: 177 DSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLH 236

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            +I       +  +  ALV +Y++ GN+ AA  +F +   +D +++ ++I GLA  G  +
Sbjct: 237 GFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSD 296

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +A+Q F+KM     +PD     ++L+AC
Sbjct: 297 RALQLFEKMQLDCMKPDCVTVASLLSAC 324



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 185/413 (44%), Gaps = 36/413 (8%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           +S S    +++HA+I          + ++LI     H  +D A+ +FD     N+  +N 
Sbjct: 22  NSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNK 81

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA-SLSLLSLGRGLHCLIVKS 158
           +I GL         +  F  M+  +V P+  T+  V ++ +   +   +   +H  I+  
Sbjct: 82  VISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHH 141

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLL- 201
           G      V   L D+Y + G    A  VF+    K+                + E++LL 
Sbjct: 142 GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLF 201

Query: 202 --------------WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRK 243
                         ++ +++ C+KI   +   +L G + K  ++S      +L+  + R 
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G+L  A ++F +M  +  +S+ ++I+G +Q G +++AL +F +M    ++ +  TV S L
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SACA VGA   G ++H+Y+          I  +L+D+Y KC +IE A   F  T+ ++++
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
            W  M+      G   ++   F +M   G  P+   + +IL  C   G + L 
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG 434


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  331 bits (848), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 206/638 (32%), Positives = 315/638 (49%), Gaps = 88/638 (13%)

Query: 82  ALSIFDHFTPK--NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           A  +F   TP   ++  +N ++  L ++  F   +     M+ L VRP+ +T+     + 
Sbjct: 70  AQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPAC 129

Query: 140 ASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYV---QLGKTRGAFKVFDETPEKNK 195
           + L LL +GR +H  ++K   +  ++FV   L DMY    Q+GK R   +VFD  P+  K
Sbjct: 130 SRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR---QVFDMVPDSGK 186

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF-------GMMP--------------------KK 228
              + +WN +I G ++ G   +A+ LF       G +P                    K+
Sbjct: 187 Q--LGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKE 244

Query: 229 NVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
            V  +V             +L+D + R G    A  +F  +    VVSW  +I G    G
Sbjct: 245 AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQG 304

Query: 276 EAEKALAM---FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
               A  +     Q+ + GV  N  T+++ L  CA + A   G  +H Y   +      A
Sbjct: 305 HVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVA 364

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G+ALVDMYAKCG +  +  VF     ++ +TW  +I    +HG   +A   F +M  SG
Sbjct: 365 VGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASG 424

Query: 393 -TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
              P+   F+A L AC +SG V   L  F +M  D+ +EP+      VV++L R G+  +
Sbjct: 425 EARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDE 484

Query: 452 GY---------QNSQNSFTKLLQLKPKH--------------------PSSYVLLSNIYA 482
            Y         +   ++++ +L     H                     S YVLL NIY+
Sbjct: 485 AYAMVTSMEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYS 544

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           A G+W   A VR+ M+RR + K+PG S+IEV+G +HRF AG   H  ++E+H+ +E +  
Sbjct: 545 AAGQWTRAAEVRSRMRRRGVAKEPGCSWIEVDGAIHRFMAGESAHPASEEVHAHMEALWG 604

Query: 541 GAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
               +GY P T  VLH++ + +K   L CHSEKLA+AFGL++  PG TI++ K L +C D
Sbjct: 605 EMVARGYTPDTSCVLHDMDDGDKAAVLRCHSEKLAIAFGLLRAAPGATIRVAKNLRVCND 664

Query: 600 CHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           CH   K+ SK+  REIVLRD  RFH+F++G CSC DYW
Sbjct: 665 CHEAAKFLSKMVGREIVLRDVRRFHHFRNGQCSCGDYW 702



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 60/182 (32%), Positives = 93/182 (51%), Gaps = 6/182 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFE-QMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           +L+  + R G +  A  LF    P +G VV+W  M++   Q+G  ++A+   + M+  GV
Sbjct: 56  ALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGV 115

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAAS 351
           R +  T  SAL AC+++  L+ G  +H Y+  +D       + +ALVDMYA    +  A 
Sbjct: 116 RPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKAR 175

Query: 352 LVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACW 408
            VF    +  K L  W AMI G A  G  E+A++ F +M   +G  P  T   ++L AC 
Sbjct: 176 QVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACA 235

Query: 409 YS 410
            S
Sbjct: 236 RS 237



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 56/251 (22%), Positives = 97/251 (38%), Gaps = 17/251 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   +  +  +   L+   +     D A  IF      ++  +N LI G     H
Sbjct: 246 VHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGH 305

Query: 110 FQSCISHFVFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                     M +L    V PN +T   +    A L+  + G+ +H   V+  ++ D  V
Sbjct: 306 VADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAV 365

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
              L DMY + G    +  VFD  P +N     + WNVLI      G   +A  LF  M 
Sbjct: 366 GSALVDMYAKCGCLALSRAVFDRLPRRN----TITWNVLIMAYGMHGLGGEATVLFDRMT 421

Query: 226 ----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-----AMINGFSQNGE 276
                + N  ++++ +      G + +  +LF  M     V  T      +++   + G 
Sbjct: 422 ASGEARPNEVTFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGR 481

Query: 277 AEKALAMFFQM 287
            ++A AM   M
Sbjct: 482 LDEAYAMVTSM 492


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  330 bits (847), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 213/682 (31%), Positives = 345/682 (50%), Gaps = 83/682 (12%)

Query: 33  HIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSID---YALSIF 86
           H I L+  S  TK L+    IHA +I+ N      I  Q+ S  +L+   D    A  +F
Sbjct: 27  HTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIV-QVNSLINLYAKCDQIMVARILF 85

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLL 145
           D    +N+  +  L+ G   N      +  F  M+ +  +RPN   +  +  S +    +
Sbjct: 86  DGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQV 145

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G   H   +KSG+ +  +V+  L  MY +    +GA  V+ E P  +    V  +N++
Sbjct: 146 VEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLD----VFSYNII 201

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA---------------------------------- 231
           ING  + GY  +A+E+   M  + +                                   
Sbjct: 202 INGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGA 261

Query: 232 ---SWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
              S+VS  +ID + + G++  A ++F ++  K VVSWTA++  +SQNG  E+AL  F +
Sbjct: 262 EYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPE 321

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M   G+  N++T    L++CA + AL  G  +H  I  + F     +G AL++MY+K G+
Sbjct: 322 MEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGS 381

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           IEAA  VF E   +D +TW+AMI GL+ HG   +A+  F++M+ +   P    F+ +L+A
Sbjct: 382 IEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSA 441

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS---------------- 450
           C + G V+    + + +     IEP V+H+T +V LL + G+                  
Sbjct: 442 CAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVV 501

Query: 451 ------------QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                       Q Y   +     +LQ+ P    +Y+LLSN+YA   RW  V ++R LM+
Sbjct: 502 AWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMR 561

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
            R++KK+PG S+IE+   +H F + G  H  + +I+ K+++++   R  GY+P    V H
Sbjct: 562 ERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFH 621

Query: 557 NIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           ++++E K E +  HSEKLA+A+GL++T  G  I+++K L +C DCHS +K  SK++ R I
Sbjct: 622 DVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMI 681

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
           ++RD  RFH F DG CSC DYW
Sbjct: 682 IVRDANRFHCFGDGGCSCADYW 703



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 171/397 (43%), Gaps = 48/397 (12%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P+  I  T IIS    S    +  Q H   +   L     +   LI   S    +  A+
Sbjct: 126 RPNEYIFAT-IISSCSDSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAM 184

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           S++      ++  +N++I GL EN +    +     M+   +  + +TY       + L 
Sbjct: 185 SVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLK 244

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG  +HC + ++G EYD+FV   + DMY + G    A KVF+    KN    V+ W 
Sbjct: 245 DLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKN----VVSWT 300

Query: 204 VLINGCSKIGYLRKAVELF------GMMPKK-------NVASWVS--------------- 235
            ++   S+ G   +A+  F      G++P +       N  + +S               
Sbjct: 301 AILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKS 360

Query: 236 -----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                      LI+ + + G ++ A ++F +M  +  ++W+AMI G S +G   +AL +F
Sbjct: 361 GFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVF 420

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA 342
            +ML A    +  T V  LSACA +G+++ G    N +     G++  +   T +V +  
Sbjct: 421 QEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLM-KQTGIEPGVEHYTCIVGLLC 479

Query: 343 KCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRY 378
           K G ++ A      T  K D++ W  ++    +H  Y
Sbjct: 480 KAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNY 516


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 213/677 (31%), Positives = 336/677 (49%), Gaps = 76/677 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           T  + L  S +  +    +H+ I+     +++ +   LI++ S+  S+D A ++F+    
Sbjct: 150 TSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILC 209

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K++ ++  ++    EN +F+  +     M      PN  T+    K+   L      +G+
Sbjct: 210 KDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGV 269

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I+K+    D  V V L  +Y QLG    AFKVF+E P+ +    V+ W+ +I    +
Sbjct: 270 HGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKND----VVPWSFMIARFCQ 325

Query: 212 IGYLRKAVELFGMM------PKKNVASWV------------------------------- 234
            G+  +AV+LF  M      P +   S +                               
Sbjct: 326 NGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYV 385

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +LID + +   +  A +LF ++  K  VSW  +I G+   GE  KA +MF + L   V
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREALRNQV 445

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
              + T  SAL ACA + +++ GV+VH      +   K A+  +L+DMYAKCG+I+ A  
Sbjct: 446 SVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQS 505

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF E +  D+ +W A+I G + HG   QA++    M     +P+G  FL +L+ C  +G 
Sbjct: 506 VFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGL 565

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------- 453
           +      F+SM  D+ IEP ++H+T +V LL R GQ  +                     
Sbjct: 566 IDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAML 625

Query: 454 -----QNSQN----SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                QN++     S  ++L++ PK  ++YVL+SN+YA   +W +VA +R  M+   +KK
Sbjct: 626 SASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKK 685

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEE 561
           +PG S+IE  G VH F  G   H   K I+  LE +   A   GY+P    VL ++  EE
Sbjct: 686 EPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEE 745

Query: 562 KEEALGCHSEKLALAFGLIQ-TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
           K++ L  HSE+LALA+GL++  +    I I+K L IC DCHS MK  S I QR++V+RD 
Sbjct: 746 KDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDM 805

Query: 620 TRFHYFKDGTCSCRDYW 636
            RFH+F  G CSC D+W
Sbjct: 806 NRFHHFHAGVCSCGDHW 822



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 81/360 (22%), Positives = 136/360 (37%), Gaps = 74/360 (20%)

Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
           I H     RL +R NR+     S   A+L L S    +  L   +   Y A +R      
Sbjct: 7   IIHVAQTRRLMIRCNRIRQCGFSVKTAALDLESSDSIIPGLDSHA---YGAMLR-----R 58

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
            +Q      A  +  +  +K     +   N+L+N   K G+ + A+ LF  MP++N  S+
Sbjct: 59  CIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSF 118

Query: 234 VSLIDGFMRKGD------LKKAG------------ELFEQMPEKGVVSW----------- 264
           V+L  G+  +        L + G            +LF  + +  +  W           
Sbjct: 119 VTLAQGYACQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYD 178

Query: 265 ------TAMINGFS-------------------------------QNGEAEKALAMFFQM 287
                  A+IN +S                               +NG  E +L +   M
Sbjct: 179 SNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCM 238

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
             AG   N++T  +AL A   +GA +    VH  I    + L   +G  L+ +Y + G++
Sbjct: 239 RMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDM 298

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             A  VF E  + D++ W+ MI     +G   +A+  F +M  +   P+     +IL  C
Sbjct: 299 SDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/220 (21%), Positives = 99/220 (45%), Gaps = 7/220 (3%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L++ +++ G  K A  LF++MPE+  VS+  +  G++     +  + ++ ++   G   N
Sbjct: 90  LLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYA----CQDPIGLYSRLHREGHELN 145

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
                S L     +   E    +H+ I    +     +G AL++ Y+ CG++++A  VF 
Sbjct: 146 PHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFE 205

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               KD++ W  ++     +G +E +++    M  +G  P+   F   L A    G    
Sbjct: 206 GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDF 265

Query: 416 ALNFFDS-MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           A       ++  Y ++P V     ++ L +++G  S  ++
Sbjct: 266 AKGVHGQILKTCYVLDPRVG--VGLLQLYTQLGDMSDAFK 303


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 178/458 (38%), Positives = 265/458 (57%), Gaps = 38/458 (8%)

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
           +G L  A +LF  MP K+  +  ++I  +      + A ++FE MPEK +V+W ++INGF
Sbjct: 28  VGDLNLACKLFDEMPHKDTVTLDTMITAY-----FESAYKVFELMPEKDIVAWNSVINGF 82

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           + NG+  +AL ++ +M   GV  + FT+VS LSACA++  L  G R H Y+         
Sbjct: 83  ALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNL 142

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
               AL+D+YAKCG I  A  +F E   E+++++WT++I GLA++G  ++A+++FK M  
Sbjct: 143 HANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNGFGKEALEHFKDMER 202

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
            G  P    F+ +L AC + G V     +F  M+  Y I P ++H+  +V+LL R G   
Sbjct: 203 EGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLK 262

Query: 451 QGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYA 482
           + Y   Q+                            +  +LLQL+PK    YVLLSN+YA
Sbjct: 263 EAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEPKDSGDYVLLSNLYA 322

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMA 540
           +E RW DV  VR  M    ++K PG+S +E+  HVH F  G   H  ++ I+  L ++  
Sbjct: 323 SEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHPQSEAIYKMLVEMAM 382

Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
             +  GY+P T  VL +I+EE KE AL  HSEK+A+AF LI T PGT I+I+K L +C D
Sbjct: 383 KLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPGTPIRIIKNLRVCAD 442

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CH  +K  SK+ +R+IV+RD +RFH+F+DG+CSCRDYW
Sbjct: 443 CHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 60/244 (24%), Positives = 110/244 (45%), Gaps = 17/244 (6%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    K++  +N +I G A N      ++ +  M    V P+  T   +  + A 
Sbjct: 60  AYKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVEPDGFTMVSLLSACAE 119

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
           L+ L LGR  H  +VK G+  +      L D+Y + G    A K+FDE   E+N    V+
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERN----VV 175

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQM 256
            W  LI G +  G+ ++A+E F  M ++ +     ++V ++      G + +  E F++M
Sbjct: 176 SWTSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRM 235

Query: 257 PEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
            E+      +  +  M++   + G  ++A   +  + D  ++ N     + L AC   G 
Sbjct: 236 KEQYDIVPRIEHYGCMVDLLGRAGLLKEA---YDYIQDMPLQPNAVIWRTLLGACTIHGH 292

Query: 312 LEAG 315
           L  G
Sbjct: 293 LGLG 296



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 71/178 (39%), Gaps = 21/178 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAE 106
           R+ H  ++   L  +      L+   +   +I  A  IFD     +N+  +  LI GLA 
Sbjct: 127 RRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAV 186

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY---- 162
           N   +  + HF  M R  + P+ +T+  V  + +           HC IV  G EY    
Sbjct: 187 NGFGKEALEHFKDMEREGLVPSEITFVGVLYACS-----------HCGIVNEGFEYFKRM 235

Query: 163 ----DAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
               D   R+ H   M   LG+     + +D   +     + ++W  L+  C+  G+L
Sbjct: 236 KEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHL 293


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 205/638 (32%), Positives = 323/638 (50%), Gaps = 69/638 (10%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H + L     +    ++IHAQI+   L     +   L+ +      +  A  +FD    +
Sbjct: 7   HRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQR 66

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +   +  ++    +       +S F +M     ++P+   Y  + K+ ASL  L LG+ +
Sbjct: 67  DHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQV 126

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H   V S    D  V+  L DMY + G    A  VFD         S+L+          
Sbjct: 127 HARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFD---------SILV---------- 167

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                           K   SW +++ G+ R G   +A ELF + P + + SWTA+I+G 
Sbjct: 168 ----------------KTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNLYSWTALISGL 211

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCNDFGLK 330
            Q+G       MF +M   GV   D  V+S++  ACA +  L  G ++H  +  + +   
Sbjct: 212 VQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESC 271

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             I  ALVDMYAKC +I AA  VF     +D+++WT++I G A HGR ++A+  + +M+ 
Sbjct: 272 LFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVL 331

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           +  +P+   F+ ++ AC ++G V      F +M  DY I PS++  T  ++LLSR G  +
Sbjct: 332 AEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFLDLLSRSGHLN 391

Query: 451 QG-------------------------YQNSQNSF---TKLLQLKPKHPSSYVLLSNIYA 482
           +                          + N++       +LL L    PS+YVLLSN+YA
Sbjct: 392 EAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPSTYVLLSNVYA 451

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
             G+W+ ++RVR LM    +K+ PG+S I++      F AG   H +  EI   L+++ A
Sbjct: 452 GAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDEIFGLLKELDA 511

Query: 541 GAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
             R++GY+P T +VLH+++E EKE  L  HSE+ A+A+GL++  PGT I+IVK L ICGD
Sbjct: 512 EMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIRIVKNLRICGD 571

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CH+ +K  S I  +EI++RD TR+H+FKDG CSC D+W
Sbjct: 572 CHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  330 bits (846), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 209/673 (31%), Positives = 338/673 (50%), Gaps = 77/673 (11%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           +I +  +    R++H  ++         I    I   S    +  A ++FD+   +++  
Sbjct: 148 VIRACGNLDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGT 207

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N +I G   N      +  F  M   SV  + +T   +      L  +  G  +H   +
Sbjct: 208 WNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAI 267

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI---------- 206
           K G+E+D FV   L +MY + G+ R A  +F++     K   ++ WN L+          
Sbjct: 268 KLGLEFDLFVCNALINMYAKFGELRSAETIFNQM----KVRDIVSWNSLLAAFEQNKKPV 323

Query: 207 ------NGCSKIGYLRK----------AVELFGMMPKKNVASWVS--------------L 236
                 N    IG +            A EL   +  +++  +V+              +
Sbjct: 324 IALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAI 383

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM-LDAGVRAN 295
           ID + + G +  A ++FE +P K V+SW ++I G+SQNG A +A+ ++  M   +G   N
Sbjct: 384 IDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPN 443

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T VS L+A +++GAL+ G++ H  +  N       + T LVDMY KCG +  A  +F 
Sbjct: 444 QGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFY 503

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E   +  ++W A+I    +HG   +A++ FK+M   G +PD   F+++L+AC +SG V  
Sbjct: 504 EVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDE 563

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------- 462
               F  M+  Y I PS+KH+  +V+L  R G   + +   +N   +             
Sbjct: 564 GQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGAC 623

Query: 463 ---------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                          LL+++ ++   YVLLSNIYA  G W+ V  VR+L + R +KK PG
Sbjct: 624 RIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPG 683

Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEE 564
           WS IEV+  +  F  G   H   +EI+S+L ++ A  +  GY+P   +VL ++++ EKE 
Sbjct: 684 WSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKEN 743

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
            L  HSE+LA+AFG+I T P TT++I K L +CGDCH+  K+ SKI++REI++RD+ RFH
Sbjct: 744 ILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFH 803

Query: 624 YFKDGTCSCRDYW 636
           +FKDG CSC DYW
Sbjct: 804 HFKDGVCSCGDYW 816



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 213/451 (47%), Gaps = 66/451 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA +++     S  ++ +LI+  +    I +A   FD    K+++ +N +I   A  
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 108 SHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
            HF + +  F   L  S ++ +  T+P V ++  +L     GR +HCL++K G E D ++
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVLKLGFECDVYI 176

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
                  Y + G    A  +FD    ++    +  WN +I+G    G + +A+E+F  M 
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRD----IGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 227 KKNVA--------------------SWV-------------------SLIDGFMRKGDLK 247
            K+V+                    S V                   +LI+ + + G+L+
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELR 292

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +F QM  + +VSW +++  F QN +   AL ++ +M   GV  +  T+VS  S  A
Sbjct: 293 SAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAA 352

Query: 308 KVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           ++G   +   +H +++   + L   A+G A++DMYAK G I++A  VF     KD+++W 
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWN 412

Query: 367 AMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQVK--------LAL 417
           ++I G + +G   +AI  +  M  YSG  P+   +++ILTA    G +K        L  
Sbjct: 413 SLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIK 472

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           NF   + FD F+       T +V++  + G+
Sbjct: 473 NF---LYFDIFVS------TCLVDMYGKCGK 494



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 124/287 (43%), Gaps = 41/287 (14%)

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L + LH L+V SG     F+   L + Y  LG    A   FD+   K+    V  WN +I
Sbjct: 58  LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKD----VYTWNSMI 113

Query: 207 NGCSKIGYLRKAVELFG-------------MMP------------------------KKN 229
           +  ++IG+   AV+ F                P                        + +
Sbjct: 114 SAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFECD 173

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           V    S I  + R G +  A  LF+ M  + + +W AMI+GF  NG+  +AL +F +M  
Sbjct: 174 VYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRF 233

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
             V  +  T+ S L  C ++  + +GV +H Y           +  AL++MYAK G + +
Sbjct: 234 KSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRS 293

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           A  +F + K +D+++W +++     + +   A+  + KM   G  PD
Sbjct: 294 AETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPD 340


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  330 bits (846), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 212/643 (32%), Positives = 325/643 (50%), Gaps = 72/643 (11%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLF-ASSR-ITTQLISSASLHKSIDYALSIF 86
           +T    +SL+ S ++ ++  ++HA ++   L  A+ R +  +L  + +    +D +L++ 
Sbjct: 287 LTADRAVSLLTSCSTARRAAELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALL 346

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                     +   I   +   H    ++    ML   + P   T   +S S+ +   LS
Sbjct: 347 RRTRDPTAIFYTSAIHAHSSRGHRLPALALLSDMLAQGLLPTAHT---LSASLPACRGLS 403

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR LH    K  +  D++V   L  MY + G    A  +FD+        SV     ++
Sbjct: 404 PGRALHGYAFKLALAGDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSV---TAML 460

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
              + +G L  A  LF  +P K+   W ++IDG+ + G                      
Sbjct: 461 TCYADMGALDDARSLFDGLPTKDFVCWNAMIDGYTQHG---------------------- 498

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCN 325
                       +AL +F +ML +GV  ++ TVV  LSA A++G +E+G  +H+Y+ +  
Sbjct: 499 ---------RPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSR 549

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              L   +GTAL+DMY KCG++  A  VF    +KD++ W AMI G A+HG   +A++ F
Sbjct: 550 RVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDSRKALEMF 609

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +    G  P    F+ +L AC +SG V+    FF SM  +Y I+P ++H+  +V+LL R
Sbjct: 610 VQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCMVDLLGR 669

Query: 446 VGQDSQGYQNSQN--------SFTKLLQLKPKHPS--------------------SYVLL 477
            G   + +   Q+         +  LL     H +                     Y+LL
Sbjct: 670 AGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLANSGMYILL 729

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           SNIYAA G W +VARVR++M+   I+K+PG S IE++  V+ F AG   H    EI+  L
Sbjct: 730 SNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRTDEIYVML 789

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           + +    +E G++P TE VLH++ E  KE+AL  HSEKLALAFGLI T PG TIKIVK L
Sbjct: 790 DKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGATIKIVKNL 849

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             C DCH+++K  S+I+ R+IV RD  RFH+F DG+CSC DYW
Sbjct: 850 RACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 202/635 (31%), Positives = 330/635 (51%), Gaps = 76/635 (11%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPKNLHIF 97
           + +S  +++Q H+ ++   L  ++   +++ +  SL  H  I+YAL +F      +  ++
Sbjct: 11  ACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLY 70

Query: 98  NVLIRGLAENSHFQS-CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           N L +     S   S  +  +  ML+  V PN  T+P +   + +  L    + LH  ++
Sbjct: 71  NTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSL---IRACKLEEEAKQLHAHVL 127

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K G   D +   +L  +Y   G    A +VF                     C+      
Sbjct: 128 KFGFGGDTYALNNLIHVYFAFGSLDDARRVF---------------------CT------ 160

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNG 275
                   M   NV SW SL+ G+ + G + +A  +FE MP +K  VSW AMI  F +  
Sbjct: 161 --------MSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGN 212

Query: 276 EAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
              +A A+F +M ++  +  + F   + LSAC  VGALE G+ +H Y+      L   + 
Sbjct: 213 RFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLA 272

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-T 393
           T ++DMY KCG ++ A  VF   K K + +W  MI G A+HG+ E AI+ FK+M      
Sbjct: 273 TTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMV 332

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG- 452
            PD   F+ +LTAC +SG V+    +F  M   + I+P+ +H+  +V+LL+R G+  +  
Sbjct: 333 APDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAK 392

Query: 453 ---------------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
                                       +  +    ++++L P++   YV+L N+YA+ G
Sbjct: 393 KVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRVIELDPENSGRYVILGNMYASCG 452

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAR 543
           +W+ VA VR LM  R +KK+PG+S IE+ G V+ F AGG  H LA+ I++K+ +++   R
Sbjct: 453 KWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAGGRDHPLAEAIYAKIYEMLESIR 512

Query: 544 EQGYMPGTEWVLHN-IKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
             G++P T+ VLH+ ++EE+E  L  HSEKLA+A+GL++T  G T+++ K L +C DCH 
Sbjct: 513 VVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLLKTKRGETLRVTKNLRVCKDCHQ 572

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             K  SK+   +I++RD +RFH+F +G CSC+DYW
Sbjct: 573 ASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 218/723 (30%), Positives = 360/723 (49%), Gaps = 126/723 (17%)

Query: 36  SLIHSSNST---KQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           S +HS+ S      LR +H        L  L +++ + T  + S++L    D+A  +FD 
Sbjct: 37  SFLHSTTSIGSPPSLRALHGHYFKKGSLQILNSANYLLTLYVKSSNL----DHAHKLFDE 92

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCI-SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
            T KN   + +LI G A  +     + S F  M      PN+ T   V K  +  + +  
Sbjct: 93  ITHKNTQTWTILISGFARAAGSSELVFSLFREMQADGACPNQYTLSSVLKCCSRENNIQF 152

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------------- 194
           G+G+H  I+++GV  D  +   + D+Y++  +   A   F+   EK+             
Sbjct: 153 GKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLR 212

Query: 195 --------------KSESVLLWNVLINGCSKIGYLRKAVE-LFGMMPKKN---------- 229
                          ++ V+ WN +I+G  + GY R A+E L+ M+              
Sbjct: 213 EGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEFSPVTFSIA 272

Query: 230 --VASWVSLI-----------------DGFMRK---------GDLKKAGELFEQMP---- 257
             + S +SL+                 DG++R          G + KA  + + +P    
Sbjct: 273 LILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFL 332

Query: 258 EKG------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
            KG            +VSW++M++G+  NG+ E  +  F  M+   +  +  TV + +SA
Sbjct: 333 RKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISA 392

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA  G LE G ++H YI      +   +G++L+DMY+K G+++ A ++F + KE +++ W
Sbjct: 393 CANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIKEPNVVLW 452

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           T+MI G A+HG+ ++AI  F+ M+  G  P+   F+ +L AC + G ++    +F  M+ 
Sbjct: 453 TSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVGVLNACSHVGLIEEGCRYFRMMKD 512

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQG----YQNSQNSFTK------------------- 462
            Y I P V+H+T +VNL  R G   +     ++NS + FT                    
Sbjct: 513 TYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSISHFTSVWRSFLSSCRLHKNFNMGK 572

Query: 463 -----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
                LLQ  P  P +Y+LLSN+ ++  +W + A VR+LM +R +KK PG S++++   +
Sbjct: 573 SVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVRSLMYQRGVKKQPGQSWVQLKDQI 632

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLA 574
           H F  G   H   KEI+S L+ ++   +E GY    + V+ +++EE+ E L   HSEKLA
Sbjct: 633 HSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAKLVMQDVEEEQGEVLISHHSEKLA 692

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCR 633
           L F +I T+P T I+I+K L IC DCH+  KYAS++ +REI++RDT RFH+FK  +CSC 
Sbjct: 693 LVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLLEREIIVRDTHRFHHFKQSSCSCG 752

Query: 634 DYW 636
           +YW
Sbjct: 753 EYW 755


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 183/479 (38%), Positives = 279/479 (58%), Gaps = 40/479 (8%)

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV---SLIDGFMRKGDLKKAGELFE 254
            V+ WN L+ G S+ G L +   LF  M  + VA+ V   +L++ + + G +  A  + +
Sbjct: 293 DVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTLVNLYGKCGRVDDARRVLD 352

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
            MP +  VSWTAMI  ++QNG A +A+ +F  M   G   +D T++S + +CA +G L  
Sbjct: 353 AMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSL 412

Query: 315 GVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWG 371
           G R+H  I  +  F     +  A++ MY KCGN+E A  VF     + + ++TWTAMI  
Sbjct: 413 GKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFESVPLRTRSVVTWTAMIRA 472

Query: 372 LAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
            A +G  E+AI+ F++M+  G TEP+   FL++L+AC + GQ++ A   F SM  D+ + 
Sbjct: 473 YAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQLEQAWEHFCSMGPDFGVP 532

Query: 431 PSVKHHTVVVNLLSRVG-----------------------------QDSQGYQNSQNSFT 461
           P+  H+  +V+LL R G                             Q +   + SQ +  
Sbjct: 533 PAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAFLSACQMNGDLERSQRAAK 592

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
           ++ +L+P++ +  VLLSN+YAA+GR  DVAR+R  M+   +KK  G S+IE+N  VH F 
Sbjct: 593 RVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVKKFAGRSWIEINNRVHEFM 652

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKE-EALGCHSEKLALAFG 578
                H    EI+S+LE +    +E GY+P T+ VL ++ EEK+ + LG HSE+LA+A G
Sbjct: 653 VSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEEKKAQLLGYHSERLAMALG 712

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I T PGTT+++VK L +C DCH+  K+ S+I  R+I++RDT RFH+FKDG CSC DYW
Sbjct: 713 IISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDTSRFHHFKDGVCSCGDYW 771



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 80/321 (24%), Positives = 141/321 (43%), Gaps = 39/321 (12%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKKNVAS 232
           YV   +   A  +FD  P  +       WN++I   ++I  L  A ELF GM+  ++V S
Sbjct: 83  YVSSSRIHDARALFDSMPGFD----AFTWNIMIAAYARINRLDDARELFHGMISGRDVVS 138

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           W  L+ G+ R   L++A  LF +MP    V+ T+++ G++ NG   +A  +F ++  AG 
Sbjct: 139 WAILVAGYARHDRLEEASALFRRMPLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGD 198

Query: 293 RANDFTVVSALSAC----AKVGALE---AGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           R  D T  +A+ A     A+V   E   A +++ N           A  + L+  YA+ G
Sbjct: 199 R--DATACNAMIAAYGKNARVDLAEGLFAQIKLRN----------AASWSLLLLTYAQNG 246

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           +++ A   F    ++D + +TAM   L+  G    A    ++M+   +  D   + A+L 
Sbjct: 247 HLDLAKKSFDRMPQRDSIAFTAMTAVLSDQGELRGA----REMLRYLSAVDVIAWNALLE 302

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465
               +G +      F +M          +H TV   +++    +  G     +   ++L 
Sbjct: 303 GYSRTGDLDEVRRLFSAM----------EHRTVATTVVAGTLVNLYGKCGRVDDARRVLD 352

Query: 466 LKPKHPS-SYVLLSNIYAAEG 485
             P   S S+  +   YA  G
Sbjct: 353 AMPVRTSVSWTAMIAAYAQNG 373



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 93/238 (39%), Gaps = 39/238 (16%)

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           DE       ++  L N+LI+   K G    A  +F  +   N  SW  +I  ++    + 
Sbjct: 31  DEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVRLPNEYSWSCIIQAYVSSSRIH 90

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  LF+ MP     +W  MI  +++    + A  +F                       
Sbjct: 91  DARALFDSMPGFDAFTWNIMIAAYARINRLDDARELF----------------------- 127

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
                      H  IS  D  +  AI   LV  YA+   +E AS +F      D +T T+
Sbjct: 128 -----------HGMISGRDV-VSWAI---LVAGYARHDRLEEASALFRRMPLWDTVTCTS 172

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           ++ G A +G   +A + F ++  +G + D T   A++ A   + +V LA   F  ++ 
Sbjct: 173 VLQGYAHNGHLAEAQELFDRIGGAG-DRDATACNAMIAAYGKNARVDLAEGLFAQIKL 229


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 205/599 (34%), Positives = 311/599 (51%), Gaps = 98/599 (16%)

Query: 127 PNRLTYPFVSKSVAS---LSLLSLGR------GLHCLIVKSGVEYDAFVRVHLADMYVQL 177
           PN  + P   KS+     +SLL   R       +H  ++++G   D F+   L     + 
Sbjct: 25  PNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKC 84

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PK---- 227
                A ++F  T   N    V L+  LI+G    G   +A++L+  M      P     
Sbjct: 85  HAIDYASRIFQYTHNPN----VYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLM 140

Query: 228 ----KNVASWVSLIDG-------------------------FMRKGDLKKAGELFEQMPE 258
               K   S ++L +G                         + + G+L  A  +FE+MPE
Sbjct: 141 ASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPE 200

Query: 259 ----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
               K  V WTAMI+GF +N E  +AL  F  M    VR N+FT+V  LSAC+++GALE 
Sbjct: 201 DVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEI 260

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G  VH+Y+   +  L   +G AL++MY++CG+I+ A  VF E K++D++T+  MI GL++
Sbjct: 261 GRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSM 320

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           +G+  QAI+ F+ M+     P    F+ +L AC + G V      F SM  DY +EP ++
Sbjct: 321 NGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIE 380

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH------------------------ 470
           H+  +V+LL RVG+  + Y        + +++ P H                        
Sbjct: 381 HYGCMVDLLGRVGRLEEAY-----DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAK 435

Query: 471 ---------PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
                      +YVLLS++YA+ G+WK+ A+VR  M+   ++K+PG S IEVN  +H F 
Sbjct: 436 ELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFL 495

Query: 522 AGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFG 578
            G   H   + I+ KLE++    R +GY P  E VL +I++ EKE AL  HSE+LA+ +G
Sbjct: 496 LGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYG 555

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           LI T P T I+++K L +C DCHS +K  +KI++R+IV+RD  RFHYF++G CSC DYW
Sbjct: 556 LISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 193/429 (44%), Gaps = 43/429 (10%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           P  N  S+ K   ++ +  IISL+  S    Q+  IHAQ+I +       +  +L+ S S
Sbjct: 23  PHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNGHSQDPFMVFELLRSCS 82

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
              +IDYA  IF +    N++++  LI G   + ++   I  +  ML  S+ P+      
Sbjct: 83  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLMAS 142

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + K+  S   L  GR +H   +K G   +  VR+ + ++Y + G+   A +VF+E PE  
Sbjct: 143 ILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 202

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------AS 232
            ++  + W  +I+G  +     +A+E F  M  +NV                        
Sbjct: 203 VAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 262

Query: 233 WV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
           WV                 +LI+ + R G + +A  +F++M ++ V+++  MI+G S NG
Sbjct: 263 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 322

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG- 334
           ++ +A+ +F  M+   +R  + T V  L+AC+  G ++ G  + + ++  D+ ++  I  
Sbjct: 323 KSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMA-RDYRVEPQIEH 381

Query: 335 -TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
              +VD+  + G +E A  L+       D +    ++    +H   E   Q  K++   G
Sbjct: 382 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRG 441

Query: 393 TEPDGTVFL 401
               GT  L
Sbjct: 442 QADSGTYVL 450



 Score = 43.9 bits (102), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 25/215 (11%)

Query: 58  NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
           NLF    +   LI+  S   SID A ++FD    +++  +N +I GL+ N   +  I  F
Sbjct: 276 NLF----VGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 331

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQ 176
             M+   +RP  +T+  V  + +   L+  G  + H +     VE        + D+  +
Sbjct: 332 RVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGR 391

Query: 177 LGKTRGAF---KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----- 228
           +G+   A+   +    TP+       ++   L++ C     + K +EL   + K+     
Sbjct: 392 VGRLEEAYDLIRTMKMTPDH------IMLGTLLSACK----MHKNLELGEQVAKELEDRG 441

Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
             +  ++V L   +   G  K+A ++  +M E G+
Sbjct: 442 QADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 476


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 331/629 (52%), Gaps = 77/629 (12%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  +FD    KNL  + ++I   ++       +  F  +L     P++ T   +  +
Sbjct: 198 IQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSA 257

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
              L   SLG+ LH  +++SG+  D FV   L DMY +      + K+F+     N    
Sbjct: 258 CVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHN---- 313

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM----------------------PKKNVASWV-- 234
           V+ W  LI+G  +    ++A++LF  M                      P   +   +  
Sbjct: 314 VMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHG 373

Query: 235 ---------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                          SLI+ + R G ++ A + F  + EK ++S+    +  ++  ++++
Sbjct: 374 QTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDE 433

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           +     ++   GV A+ FT    LS  A +G +  G ++H  I  + FG    I  AL+ 
Sbjct: 434 SFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALIS 491

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY+KCGN EAA  VF +   ++++TWT++I G A HG   +A++ F +M+  G +P+   
Sbjct: 492 MYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVT 551

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS- 456
           ++A+L+AC + G +  A   F+SM +++ I P ++H+  +V+LL R G   ++  + NS 
Sbjct: 552 YIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSM 611

Query: 457 -------------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                                    +++  K+L+ +P  P++Y+LLSN+YA+EGRW DVA
Sbjct: 612 PFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVA 671

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMP 549
            +R  M+++ + K+ G+S+IEV+  VH+F  G   H  A++I+ +L+++    +  GY+P
Sbjct: 672 ALRKSMKQKKLIKETGYSWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIP 731

Query: 550 GTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
            T++VLH++++E KE+ L  HSEK+A+A+ LI T     I++ K L +CGDCH+ +KY S
Sbjct: 732 NTDFVLHDVEDEQKEQYLFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYIS 791

Query: 609 KISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            ++ REIV+RD  RFH+ KDG CSC DYW
Sbjct: 792 IVTGREIVVRDANRFHHIKDGKCSCNDYW 820



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 164/363 (45%), Gaps = 35/363 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H+ +I   L +   +   L+   +   +++ +  IF+     N+  +  LI G  ++
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQS 327

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              Q  I  F  ML   V PN  T+  V K+ ASL    +G+ LH   +K G+     V 
Sbjct: 328 RQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVG 387

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN-----------------------------KSES 198
             L +MY + G    A K F+   EKN                                S
Sbjct: 388 NSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGAS 447

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFE 254
              +  L++G + IG + K  ++  ++ K     N+    +LI  + + G+ + A ++F 
Sbjct: 448 PFTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFN 507

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
            M  + V++WT++I+GF+++G A KAL +F++ML+ GV+ N+ T ++ LSAC+ VG ++ 
Sbjct: 508 DMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDE 567

Query: 315 GVRVHNYISCN-DFGLKGAIGTALVDMYAKCG-NIEAASLVFGETKEKDLLTWTAMIWGL 372
             +  N +  N     +      +VD+  + G  +EA   +     + D L W   +   
Sbjct: 568 AWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSC 627

Query: 373 AIH 375
            +H
Sbjct: 628 RVH 630



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 137/305 (44%), Gaps = 42/305 (13%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE------------ 192
           L LG+ LH  ++ SG+  D+ +   L  +Y + G    A  +F                 
Sbjct: 55  LELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAII 114

Query: 193 ----KNKSESVLL--------------------WNVLINGCSKIGYLRKAVELFGMMPK- 227
                N  ES  L                    +  L+  CS   +    + +F  + K 
Sbjct: 115 SCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKT 174

Query: 228 ----KNVASWVSLIDGFMRKG-DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                +V    +LID F + G D++ A  +F++M  K +V+WT MI  +SQ G  + A+ 
Sbjct: 175 GYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVD 234

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F ++L +    + FT+ S LSAC ++     G ++H+++  +       +G  LVDMYA
Sbjct: 235 LFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYA 294

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           K   +E +  +F      ++++WTA+I G     + ++AI+ F  M++    P+   F +
Sbjct: 295 KSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSS 354

Query: 403 ILTAC 407
           +L AC
Sbjct: 355 VLKAC 359



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/365 (25%), Positives = 167/365 (45%), Gaps = 52/365 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLA 105
           + +H ++I   L   S +   LI+  S     + ALSIF +     ++L  ++ +I   A
Sbjct: 59  KLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFA 118

Query: 106 ENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
            NS     +  F+ ML+ S   + PN   +  + +S ++    + G  +   ++K+G  +
Sbjct: 119 NNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGY-F 177

Query: 163 DAFVRVHLA--DMYVQLG-KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           D+ V V  A  DM+ + G   + A  VFD+   KN    ++ W ++I   S++G L  AV
Sbjct: 178 DSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKN----LVTWTLMITRYSQLGLLDDAV 233

Query: 220 ELFGMM------PKK--------------------NVASWV-------------SLIDGF 240
           +LF  +      P K                     + SWV             +L+D +
Sbjct: 234 DLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMY 293

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            +   ++ + ++F  M    V+SWTA+I+G+ Q+ + ++A+ +F  ML   V  N FT  
Sbjct: 294 AKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFS 353

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L ACA +     G ++H             +G +L++MYA+ G +E A   F    EK
Sbjct: 354 SVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEK 413

Query: 361 DLLTW 365
           +L+++
Sbjct: 414 NLISY 418



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 12/179 (6%)

Query: 285 FQMLDAGVRANDFTVVSAL-------SACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           F+ L   +   D T  S L        AC + G LE G  +H+ +  +   L   +  +L
Sbjct: 21  FESLRKAISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSL 80

Query: 338 VDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE- 394
           + +Y+KCG+ E A  +F      ++DL++W+A+I   A +    +A+  F  M+      
Sbjct: 81  ITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNI 140

Query: 395 --PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
             P+   F A+L +C         L  F  +    + +  V     ++++ ++ G D Q
Sbjct: 141 IYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQ 199


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 201/641 (31%), Positives = 323/641 (50%), Gaps = 73/641 (11%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           H + L   + +    + +HA I+   +     +   L++      +  +AL +FD   P 
Sbjct: 8   HQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEM-PH 66

Query: 93  NLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             HI   +VL      N   ++            +RP+   +  + K+ A+L  +  GR 
Sbjct: 67  RDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQ 126

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +HC  + S    D  V+  L DMY                                   +
Sbjct: 127 VHCHFIVSEYANDEVVKSSLVDMY-----------------------------------A 151

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           K G L  A  +F  +  KN  SW +++ G+ + G  ++A ELF  +P K + SWTA+I+G
Sbjct: 152 KCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLYSWTALISG 211

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISCNDFGL 329
           F Q+G+  +A ++F +M    V   D  V+S++  ACA + A  AG +VH  +    F  
Sbjct: 212 FVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQVHGLVIALGFDS 271

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              I  AL+DMYAKC ++ AA  +F   + +D+++WT++I G+A HG+ E+A+  +  M+
Sbjct: 272 CVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMV 331

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
             G +P+   F+ ++ AC + G V+     F SM  DY I PS++H+T +++LL R G  
Sbjct: 332 SHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLL 391

Query: 450 SQG--------YQNSQNSFTKLLQ---------------------LKPKHPSSYVLLSNI 480
            +         +   + ++  LL                       K K PS+Y+LLSNI
Sbjct: 392 DEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNI 451

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YA+   W  V+  R  +    ++KDPG S +EV      F AG   H L ++I   L+ +
Sbjct: 452 YASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPLKEDIFRLLKKL 511

Query: 539 MAGAR-EQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
               R   GY+P T W+LH++ E EKE+ L  HSE+ A+A+GL++  PGT I+IVK L +
Sbjct: 512 EEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPGTPIRIVKNLRV 571

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CGDCH ++K+ S+I++REI++RD TR+H+FK G CSC D+W
Sbjct: 572 CGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDFW 612


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  329 bits (844), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 196/669 (29%), Positives = 338/669 (50%), Gaps = 87/669 (13%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K +++ S+ I+  +I+    S  +  Q +++H   I +  F    +   LI + +    +
Sbjct: 219 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLM 278

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A+ +F+    K++  +N ++ G +++ +F++    F  M + ++  + +T+  V    
Sbjct: 279 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG- 337

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                                             Y Q G +  A  VF +        + 
Sbjct: 338 ----------------------------------YSQRGCSHEALNVFRQMIFSGSLPNC 363

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPK--------------KNVASWVSLIDGFMRKGD 245
           +    +++ C+ +G   + +E+     K              +++  + +LID + +   
Sbjct: 364 VTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 423

Query: 246 LKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVS 301
            K A  +F+ +P  E+ VV+WT MI G +Q G++  AL +F +M+    GV  N +T+  
Sbjct: 424 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 483

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKE 359
            L ACA + A+  G ++H Y+  +      A  +   L++MY+KCG+++ A  VF    +
Sbjct: 484 ILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ 543

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           K  ++WT+M+ G  +HGR  +A+  F KM  +G  PD   FL +L AC + G V   L++
Sbjct: 544 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 603

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------------ 455
           FDSM  DY + P  +H+   ++LL+R G+  + ++                         
Sbjct: 604 FDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHS 663

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               ++++  KL+++  ++  SY L+SNIYA  GRWKDVAR+R LM++  IKK PG S++
Sbjct: 664 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 723

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGC 568
           +       F  G   H L+ +I++ LE ++   +  GY+P T + LH++ +EEK   L  
Sbjct: 724 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 783

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLALA+GL+ T PG  I+I K L +CGDCHS   Y SKI   EIV+RD +RFH+FK+
Sbjct: 784 HSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 843

Query: 628 GTCSCRDYW 636
           G+CSC  YW
Sbjct: 844 GSCSCGGYW 852



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 195/452 (43%), Gaps = 96/452 (21%)

Query: 60  FASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
           F S R + T +++S     + DYAL + +  TP     +N+LIR   +     S I+   
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
            MLR   R +  T P V K+   L     G   H LI  +G E + F+   L  MY + G
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 166

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----------PKK 228
               A  +FDE  ++   + V+ WN +++   K      A++LF  M           + 
Sbjct: 167 SLEEASMIFDEITQRGI-DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERS 225

Query: 229 NVASWV-----------------------------------SLIDGFMRKGDLKKAGELF 253
           ++ S V                                   +LID + + G ++ A ++F
Sbjct: 226 DIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVF 285

Query: 254 EQMPEKGVVSWTAMINGFSQNGE-----------------------------------AE 278
             M  K VVSW AM+ G+SQ+G                                    + 
Sbjct: 286 NMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSH 345

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SC-----NDFGLKG 331
           +AL +F QM+ +G   N  T++S LSACA +GA   G+ +H Y   +C     NDFG + 
Sbjct: 346 EALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 405

Query: 332 A---IGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
               +  AL+DMY+KC + +AA  +F +   +E++++TWT MI G A +G    A++ F 
Sbjct: 406 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 465

Query: 387 KMMYS--GTEPDGTVFLAILTACWYSGQVKLA 416
           +M+    G  P+      IL AC +   +++ 
Sbjct: 466 EMISEPYGVAPNAYTISCILMACAHLAAIRIG 497



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 14/263 (5%)

Query: 205 LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  C ++   R      G++     + NV    +L+  + R G L++A  +F+++ ++G
Sbjct: 123 VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 182

Query: 261 ---VVSWTAMINGFSQNGEAEKALAMFFQML------DAGVRANDFTVVSALSACAKVGA 311
              V+SW ++++   ++  A  AL +F +M           R++  ++V+ L AC  + A
Sbjct: 183 IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 242

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           +     VH     N   L   +G AL+D YAKCG +E A  VF   + KD+++W AM+ G
Sbjct: 243 VPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 302

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            +  G ++ A + FK M       D   + A++      G    ALN F  M F   + P
Sbjct: 303 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL-P 361

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQ 454
           +      V++  + +G  SQG +
Sbjct: 362 NCVTIISVLSACASLGAFSQGME 384


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 196/584 (33%), Positives = 298/584 (51%), Gaps = 76/584 (13%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           S RP+  T+     + A L  L     +      +G   D FV   L  +Y + G    A
Sbjct: 106 SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDA 165

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------- 232
            +VFD  P K+     + W+ ++ G    G   +A+ ++  M +  VA            
Sbjct: 166 IRVFDGMPRKDH----VAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQA 221

Query: 233 ----------------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                         SL+D + + G    A ++F  MP +  VSW
Sbjct: 222 CTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSW 281

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A+I+GF+QNG A++AL +F +M  +G++ +   +VSAL ACA VG L+ G  +H +I  
Sbjct: 282 NALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFI-L 340

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
                +  +GTA++DMY+KCG++E+A  +F +   +DL+ W AMI     HG    A+  
Sbjct: 341 RRLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALAL 400

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F+++  +G +PD   F ++L+A  +SG V+    +FD M  ++ IEP+ KH   VV+LL+
Sbjct: 401 FQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLA 460

Query: 445 RVGQDSQGYQNSQNSFT----------------------------KLLQLKPKHPSSYVL 476
           R G   +  +   +  T                            K+L+ +P+      L
Sbjct: 461 RSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLAL 520

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSK 534
           +SN+YAA  +W  V  +R LM+    KK PG+S IEV+G  H F  E   H   +EI   
Sbjct: 521 VSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKM 580

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           +  +    R+ GY+P TE+V H++ E+ KE+ L  HSE+LA+AFGL+ T+PGT + I+K 
Sbjct: 581 ISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKN 640

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L +CGDCH  +KY SKI  REIV+RD  RFH+FKDG CSC DYW
Sbjct: 641 LRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA----VELFGMMPKKNVASW 233
           G    A +VF   P   + +S   + + +  C+++G L  A    V  F     ++V   
Sbjct: 91  GSPGAALRVFRALPSSARPDSTT-FTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFVC 149

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +L+  + R G +  A  +F+ MP K  V+W+ M+ GF   G   +AL M+ +M + GV 
Sbjct: 150 SALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMREHGVA 209

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            ++  +V  + AC   G    G  VH     +   +   I T+LVDMYAK G+ + A  V
Sbjct: 210 EDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQV 269

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F     ++ ++W A+I G A +G  ++A+  F++M  SG +PD    ++ L AC   G +
Sbjct: 270 FRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSALLACADVGFL 329

Query: 414 KL 415
           KL
Sbjct: 330 KL 331


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 271/446 (60%), Gaps = 37/446 (8%)

Query: 227 KKNVASWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           ++N     +++D + + G  DL+ A ++F+ M E+ VVSW +MI  ++QNG + +A+ ++
Sbjct: 84  ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 142

Query: 285 FQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            +ML+   G++ N   + + L ACA  GA++ G  +HN +          +GT++VDMY+
Sbjct: 143 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYS 202

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG +E AS  F + KEK++L+W+AMI G  +HGR ++A++ F +M  SG  P+   F++
Sbjct: 203 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 262

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC ++G +     ++++M+ ++ IE  V+H+  +V+LL R G   + Y         
Sbjct: 263 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 322

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              + ++ S  +L +L   +   YVLLSNIYA  G WKDV R+R
Sbjct: 323 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIR 382

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            L++ R I+K PG+S  E+ G ++ F  G   H    EI+S LE ++   +E GY+P T 
Sbjct: 383 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 442

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEKE AL  HSEKLA+AF L+ + P + I I+K L +C DCH+ MK+ +KI+
Sbjct: 443 SVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 502

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +REI++RD  RFH+FKDG CSCRDYW
Sbjct: 503 EREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 54/241 (22%), Positives = 110/241 (45%), Gaps = 19/241 (7%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPF 134
           + ++ A  +FD    +++  +N +I   A+N      I  +  ML +   ++ N +    
Sbjct: 103 RDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSA 161

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           V  + A    +  G+ +H  +V+ G+E + +V   + DMY + G+   A + F +  EKN
Sbjct: 162 VLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 221

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAG 250
               +L W+ +I G    G  ++A+E+F  M +     N  +++S++      G L +  
Sbjct: 222 ----ILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 277

Query: 251 ELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             +  M      E GV  +  M++   + G  ++A ++  +M    V+ +     + LSA
Sbjct: 278 YWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM---KVKPDAAIWGALLSA 334

Query: 306 C 306
           C
Sbjct: 335 C 335



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 75/186 (40%), Gaps = 16/186 (8%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH Q++   L  +  + T ++   S    ++ A   F     KN+  ++ +I G   +
Sbjct: 176 KHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 235

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-----VKSGVEY 162
              Q  +  F  M R  +RPN +T+  V  + +   LL  GR  +  +     +++GVE 
Sbjct: 236 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE- 294

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
                 H   M   LG+     + +    E        +W  L++ C     + K VEL 
Sbjct: 295 ------HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACR----IHKNVELA 344

Query: 223 GMMPKK 228
            M  K+
Sbjct: 345 EMSVKR 350


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 203/650 (31%), Positives = 319/650 (49%), Gaps = 68/650 (10%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++      N++T   +IS        +   +++A I    +  +  + + L+       +
Sbjct: 227 VRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNA 286

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ID A  +FD +   NL + N +          +  +  F  M+   VRP+R++      S
Sbjct: 287 IDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISS 346

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            + L  +  G+  H  ++++G E    +   L DMY++  +   AF++FD          
Sbjct: 347 CSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDR--------- 397

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
                                     M  K V +W S++ G++  G++  A E FE MPE
Sbjct: 398 --------------------------MSNKTVVTWNSIVAGYVENGEVDAAWETFETMPE 431

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVR 317
           K +VSW  +I+G  Q    E+A+ +F  M    GV A+  T++S  SAC  +GAL+    
Sbjct: 432 KNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKW 491

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           ++ YI  N   L   +GT LVDM+++CG+ E+A  +F     +D+  WTA I  +A+ G 
Sbjct: 492 IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGN 551

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            E+AI+ F  M+  G +PDG  F+  LTAC + G V+     F SM   + + P   H+ 
Sbjct: 552 AERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPEDVHYG 611

Query: 438 VVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPK 469
            +V+LL R G   +  Q  ++                            +  K+  L P+
Sbjct: 612 CMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPE 671

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
              SYVLLSN+YA+ GRW D+A+VR  M+ + ++K PG S I++ G  H F +G   H  
Sbjct: 672 RTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPE 731

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGT 586
              I + L+++   A   G++P    VL ++ E EK   L  HSEKLA+A+GLI +  GT
Sbjct: 732 MPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGT 791

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           TI+IVK L +C DCHS  K+ASK+  REI+LRD  RFHY + G CSC D+
Sbjct: 792 TIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGDF 841



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/542 (25%), Positives = 231/542 (42%), Gaps = 93/542 (17%)

Query: 1   MKGHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLF 60
           M G+V +     +A TT  K S    +  T+    SL  +  +  +L+  H  +    L 
Sbjct: 3   MLGNVLHLSPMVLATTTTTKPSLLNQSKCTKATPSSL-KNCKTIDELKMFHRSLTKQGLD 61

Query: 61  ASSRITTQLISSA---SLHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISH 116
                 T+L++ +      +S+ +A  +F++        ++N LIRG A +      I  
Sbjct: 62  NDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILL 121

Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
           F+ M+   + P++ T+PF   + A       G  +H LIVK G   D FV+  L   Y +
Sbjct: 122 FLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAE 181

Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-----NVA 231
            G+   A KVFDE  E+N    V+ W  +I G ++  + + AV+LF  M +      N  
Sbjct: 182 CGELDSARKVFDEMSERN----VVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSV 237

Query: 232 SWV-----------------------------------SLIDGFMRKGDLKKAGELFEQM 256
           + V                                   +L+D +M+   +  A  LF++ 
Sbjct: 238 TMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEY 297

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
               +    AM + + + G   +AL +F  M+D+GVR +  +++SA+S+C+++  +  G 
Sbjct: 298 GASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGK 357

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKC-------------------------------G 345
             H Y+  N F     I  AL+DMY KC                               G
Sbjct: 358 SCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENG 417

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAIL 404
            ++AA   F    EK++++W  +I GL     +E+AI+ F  M    G   DG   ++I 
Sbjct: 418 EVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIA 477

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNS 459
           +AC + G + LA   +      Y+IE +     V+  T +V++ SR G D +   +  NS
Sbjct: 478 SACGHLGALDLAKWIY------YYIEKNGIQLDVRLGTTLVDMFSRCG-DPESAMSIFNS 530

Query: 460 FT 461
            T
Sbjct: 531 LT 532


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 191/591 (32%), Positives = 299/591 (50%), Gaps = 89/591 (15%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT---------- 180
           + P   KS A+L L +LG  LH L ++SG   D F    L ++Y +L             
Sbjct: 60  SLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGS 119

Query: 181 ----RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY---------------------- 214
                   KVFDE PEK+    V+ WN L+ GC++ G                       
Sbjct: 120 AVVLESVRKVFDEMPEKD----VVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFT 175

Query: 215 -------------LRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                        +R+ +EL G   +     +V    SLID +        + ++F+ +P
Sbjct: 176 LSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLP 235

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            +  + W +M+ G +QNG  ++AL +F +ML +G++    T  S + AC  + +L  G +
Sbjct: 236 VRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQ 295

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H Y+    F     I ++L+DMY KCGN+  A  +F   +  D+++WTAMI G A+HG 
Sbjct: 296 LHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGP 355

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
             +A+  F +M     +P+   FLA+LTAC ++G V     +F+SM   Y I PS++HH 
Sbjct: 356 AREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHA 415

Query: 438 VVVNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPK 469
            + + L R G+  + Y                              ++    K+  L+P+
Sbjct: 416 ALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPR 475

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKL 527
              S+++LSN Y++ GRW + A +R  M+++ ++K+P  S+IEV    H F A    H  
Sbjct: 476 SMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPW 535

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGT 586
            + I   L         QGY+P T+ V  +I+EE++ ++ C HSEKLA+ FG+I T PGT
Sbjct: 536 YERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGT 595

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           TI+++K L +C DCH++ K+ SKI  REIV+RD  RFH+FKDG CSC D+W
Sbjct: 596 TIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 47/346 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    K++  +N L+ G AE+      +     M R   +P+  T   V    A  + 
Sbjct: 129 VFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIFAEGAD 188

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           +  G  LH    ++G   D FV   L DMY    +T  + KVFD  P ++     +LWN 
Sbjct: 189 VRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRD----AILWNS 244

Query: 205 LINGCSKIGYLRKAVELF------GMMPKK-----------NVASWV------------- 234
           ++ GC++ G + +A+ LF      G+ P             N+AS +             
Sbjct: 245 MLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGG 304

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    SLID + + G++  A  +F+++    +VSWTAMI G + +G A +AL +F 
Sbjct: 305 FDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFD 364

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAK 343
           +M    ++ N  T ++ L+AC+  G ++ G +  N +S + +G+  ++    AL D   +
Sbjct: 365 RMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMS-DHYGIVPSLEHHAALADTLGR 423

Query: 344 CGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
            G +E A + + G   +     W+ ++    +H     A +  KK+
Sbjct: 424 PGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKI 469



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 57/266 (21%), Positives = 123/266 (46%), Gaps = 14/266 (5%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP ++ T + ++ +       ++  ++H     +       + + LI   +     DY++
Sbjct: 170 KP-DSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSV 228

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD+   ++  ++N ++ G A+N      +  F  ML   ++P  +T+  +  +  +L+
Sbjct: 229 KVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLA 288

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG+ LH  +++ G + + F+   L DMY + G    A ++FD      +S  ++ W 
Sbjct: 289 SLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRI----QSPDIVSWT 344

Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            +I G +  G  R+A+ LF  M     K N  ++++++      G + K  + F  M + 
Sbjct: 345 AMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDH 404

Query: 260 -GVVS----WTAMINGFSQNGEAEKA 280
            G+V       A+ +   + G+ E+A
Sbjct: 405 YGIVPSLEHHAALADTLGRPGKLEEA 430



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 20/161 (12%)

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS----ALSACAKVGALEAGVRV 318
           SW   I   +  G+   A+A+F +M  +   A   +V++    AL +CA +G    G  +
Sbjct: 21  SWAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASL 80

Query: 319 HNY-ISCNDFGLKGAIGTALVDMYAKCGN--------------IEAASLVFGETKEKDLL 363
           H   +    F  + A   AL+++Y K                 +E+   VF E  EKD++
Sbjct: 81  HALALRSGAFADRFA-ANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVV 139

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           +W  ++ G A  GR+ +A+   ++M   G +PD     ++L
Sbjct: 140 SWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVL 180


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 204/574 (35%), Positives = 304/574 (52%), Gaps = 82/574 (14%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           ++++ S +S  R LHC ++KS V Y+  F+   L   YV+LG T+ A ++FDE P+K+  
Sbjct: 47  AISTCSSISYCRALHCRVIKS-VNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKD-- 103

Query: 197 ESVLLWNVLING------------------------------------CSKIGYLRKAVE 220
             ++ WN LI+G                                    C+ +G L     
Sbjct: 104 --LVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKC 161

Query: 221 LFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           + G+  K  +   V    SLI+ + + G L+ A  LFE M  + +VSW +M+      G 
Sbjct: 162 IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGL 221

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIG 334
           AEK +  F  M  AG+ ++  TVVS L AC  +G  +    VH YI   + GL G  AI 
Sbjct: 222 AEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEAVHGYIL--NGGLDGNLAIA 279

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TAL+D+YAK G +  +  VFG     D + WTAM+   A+HGR  +AI++F+ M+  G  
Sbjct: 280 TALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVV 339

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           PD   F  +L+AC +SG V+   N+F  M   Y +E  V+H++ +V+LL R G  +  Y+
Sbjct: 340 PDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYK 399

Query: 455 ---------NS-------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                    NS                   +    +L  L P    +Y+ LSN+Y+A G+
Sbjct: 400 LIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAGQ 459

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           W+D ++VR LM+ R + ++PG SYIE    +H F  G   H   ++I++KLE+++   RE
Sbjct: 460 WRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQIYNKLEELVRKNRE 519

Query: 545 QGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            G+   TE+VLH++ EE KE+ +  HSEKLA+AFGL+ T  G  + I K + ICGDCH  
Sbjct: 520 VGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLIITKNIRICGDCHGF 579

Query: 604 MKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            K  S I +R I++RDT RFH+F +G CSC DYW
Sbjct: 580 AKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/357 (20%), Positives = 144/357 (40%), Gaps = 34/357 (9%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N +T   ++S           + IH   +   +    ++   LI+       ++ A 
Sbjct: 137 KP-NEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAAC 195

Query: 84  SIFDHFTPKNLHIFNVLI-----RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
            +F+  + ++L  +N ++      GLAE       I +F+ M R  +  ++ T   +  +
Sbjct: 196 CLFEGMSVQSLVSWNSMVAVHVHMGLAEKG-----IGYFIMMRRAGINSDQATVVSLLLA 250

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             +L +  L   +H  I+  G++ +  +   L D+Y +LG    + KVF      +    
Sbjct: 251 CENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPD---- 306

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFE 254
            + W  +++  +  G  R+A+E F +M ++ V     ++  L+      G +++    F+
Sbjct: 307 AVAWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFK 366

Query: 255 QM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M      E  V  ++ M++   ++G    A  +   M    +  N     + + AC   
Sbjct: 367 IMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSM---PMEPNSGVWGALIGACRVR 423

Query: 310 GALEAGVRVHNYISCNDFGLKGAIG---TALVDMYAKCGNIEAASLVFGETKEKDLL 363
           G +E G  V   +    F L  +       L +MY+  G    AS V    KE+ L+
Sbjct: 424 GNIELGKEVAERL----FSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLI 476


>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 196/594 (32%), Positives = 302/594 (50%), Gaps = 62/594 (10%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P   I E   I+L+ S  + ++L QI AQI+ H L  +  +    I++ S  K I +A  
Sbjct: 6   PVQRIVEEKFITLLRSCKNYERLHQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARK 65

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD     N   +N + RG  +N H +  +  F  + R++  PN  T+P + KS   L  
Sbjct: 66  LFDKIPQPNTATWNAMFRGYLQNGHHRDTVVLFGELNRIAGMPNCFTFPMIIKSCGKLEG 125

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---------- 194
           +  G  +HC   K G + ++FV   L DMY + G    A+KVF E  E+N          
Sbjct: 126 VREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVFGEMHERNVVVWTAIING 185

Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
                                V++W+VLI+G  +   +  A ELF  MP ++  SW +++
Sbjct: 186 YILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARELFDKMPNRDTMSWNAML 245

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRAND 296
           +G+   G+++   ++F++MPE+ V SW  +I G+ +NG   + L  F +ML  G V  ND
Sbjct: 246 NGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSETLESFKRMLVEGHVIPND 305

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVF 354
           FT+V+ LSAC+++GAL+ G  VH Y      G KG   +G  L+DMYAKCG IE A +VF
Sbjct: 306 FTLVAVLSACSRLGALDMGKWVHVY--AESIGYKGNLFVGNVLIDMYAKCGVIENAVVVF 363

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                KD+++W  +I GLAIHG    A+  F +M   G EPDG  F+ IL+AC + G VK
Sbjct: 364 NCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPDGVTFVGILSACTHMGLVK 423

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---------------------- 452
               +F SM   Y I P ++H+  +V+LL R G   Q                       
Sbjct: 424 DGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFIRKMPIEPDAVIWAALLGA 483

Query: 453 ---YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
              Y+N   ++ +  +L++L+P +P+++V++SNIY   GR +DVAR++  M+    +K P
Sbjct: 484 CRLYKNVEIAELALQRLIELEPNNPANFVMVSNIYKDLGRSEDVARLKIAMRDTGFRKLP 543

Query: 507 GWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           G S IE N  V  F +    H   + I+  L+ +    R  GY+P    V H +
Sbjct: 544 GCSVIECNDSVVEFYSLDERHSETESIYRVLKGLTMLLRSHGYVPNLSDVAHGL 597


>gi|414880744|tpg|DAA57875.1| TPA: hypothetical protein ZEAMMB73_657034, partial [Zea mays]
          Length = 1822

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 219/669 (32%), Positives = 338/669 (50%), Gaps = 74/669 (11%)

Query: 7    NRLTTAIAPTTNIKSSH--KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
            +R    + PTT +  S+  +P      T + SL  +S+    LR +HA +++    AS  
Sbjct: 1189 HRQQRVLGPTTGVSQSNMMRPLLRDPTTLLPSLAEASH----LRALHAHLVVSGRLASPS 1244

Query: 65   ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
                 ++S +    + YA  +     P  L   N  IR LA     + C++ F     L 
Sbjct: 1245 HLAAFLASLASSNHLSYARLVLPQ-RPATLLAHNAFIRALARGP--RPCLA-FAAFRDLP 1300

Query: 125  VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE----YDAFVR-VHLADMYVQLGK 179
            + P+  +  F+ ++  +L   +         V + ++    + A VR  H AD +VQ G 
Sbjct: 1301 LPPDHYSLNFLVRAATALVASAAEEKHVSAEVNARLQAVSAHGAAVRWGHAADPHVQSG- 1359

Query: 180  TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDG 239
                                     +++  + +G +  +   F  +   +V    +++  
Sbjct: 1360 -------------------------VLSMYAALGDVASSRAAFAEIACPDVVCVTAMVAA 1394

Query: 240  FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
                GD+  A +LF+ MP++  V+W+AMI G+   G + +AL +F +ML AG    + T+
Sbjct: 1395 LAAGGDVDAARDLFDGMPQRDHVAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATL 1454

Query: 300  VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            VS L+ACA++G L+ G  VH Y+      +   +GTALVDMY+KCG +  A  VF    E
Sbjct: 1455 VSVLTACAQIGTLDRGKWVHWYVRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAE 1514

Query: 360  KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
            +++ TWT+ + GLA++G   + +Q FK+M  +G +P+G  F+A+L  C  +G V      
Sbjct: 1515 RNVYTWTSAVSGLAMNGMGTECLQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRAC 1574

Query: 420  FDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS--------------------- 456
            FDSM   Y ++P  +H+  +V+L  R G+  D+  + N                      
Sbjct: 1575 FDSMD-KYGVDPWPEHYGCMVDLYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHN 1633

Query: 457  -----QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                 + +  KLL ++ ++ +++V LSNIYA    WK V+RVR +M+ + +KK PGWS I
Sbjct: 1634 SVDLGKYALDKLLAIESENDAAHVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTI 1693

Query: 512  EVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGC 568
            EV+G VH F  GG  H    EI   L ++    R QGY   T  VL +I+EE KE A+  
Sbjct: 1694 EVDGKVHEFYVGGRLHPRYNEIELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISL 1753

Query: 569  HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
            HSEKLALAFGLI       I+IVK L +C DCH  +K  SK+  REIV+RD  RFH+FK 
Sbjct: 1754 HSEKLALAFGLIVLPEDVEIRIVKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKG 1813

Query: 628  GTCSCRDYW 636
            G CSCRDYW
Sbjct: 1814 GECSCRDYW 1822


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 207/682 (30%), Positives = 339/682 (49%), Gaps = 76/682 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           ++IT   ++S      S  ++ Q+H  ++     ++  +   L+ S    +S+  A  +F
Sbjct: 138 DHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLF 197

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            H   K+   FN L+ G ++       I+ F  M  L  RP+  T+  V  +   +  + 
Sbjct: 198 KHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIE 257

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  +VK    ++ FV   L D Y +  +   A K+F E PE +     + +NVLI
Sbjct: 258 FGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDG----ISYNVLI 313

Query: 207 NGCSKIGYLRKAVELFGMM----------PKKNVASWV---------------------- 234
             C+  G + +++ELF  +          P   + S                        
Sbjct: 314 TCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAI 373

Query: 235 -------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                  SL+D + +     +A  +F  +  +  V WTA+I+G+ Q G  E  L +F +M
Sbjct: 374 SEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEM 433

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
             A + A+  T  S L ACA + +L  G ++H+ I  +        G+ALVDMYAKCG+I
Sbjct: 434 HRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSI 493

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + A  +F E   ++ ++W A+I   A +G    A++ F++M++SG +P+   FL+IL AC
Sbjct: 494 KEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSILCAC 553

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------------- 452
            + G V+  L +F+SM   Y +EP  +H+  +V++L R G+  +                
Sbjct: 554 SHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPDEIM 613

Query: 453 ----------YQNSQ---NSFTKLLQLKP-KHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                     ++N +    +  +L  +K  +  + YV +SNIYAA G W  V +V+  ++
Sbjct: 614 WSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKKALR 673

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
            R I+K P +S++E+    H F A    H   KEI  KL+++     EQGY P +   LH
Sbjct: 674 ERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTCALH 733

Query: 557 NIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           N+ EE K E+L  HSE++A+AF LI T  G+ I ++K L  C DCH+ +K  SKI  REI
Sbjct: 734 NVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVNREI 793

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
            +RD +RFH+F DG+CSC+DYW
Sbjct: 794 TVRDSSRFHHFTDGSCSCKDYW 815



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 100/194 (51%)

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G L  A +LF  MP KNV S  ++I G+++ G+L  A  LF+ M ++ VV+WT +I G++
Sbjct: 56  GDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYA 115

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q+    +A  +F  M   G+  +  T+ + LS   +  ++    +VH ++    +     
Sbjct: 116 QHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLM 175

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +  +L+D Y K  ++  A  +F    EKD +T+ A++ G +  G    AI  F KM   G
Sbjct: 176 VCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLG 235

Query: 393 TEPDGTVFLAILTA 406
             P    F A+LTA
Sbjct: 236 FRPSEFTFAAVLTA 249



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 120/236 (50%), Gaps = 4/236 (1%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y Q  +   AF +F +          +    L++G ++   + +  ++ G + K    S 
Sbjct: 114 YAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDST 173

Query: 234 V----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           +    SL+D + +   L  A  LF+ M EK  V++ A++ G+S+ G    A+ +FF+M D
Sbjct: 174 LMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQD 233

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G R ++FT  + L+A  ++  +E G +VH+++   +F     +  AL+D Y+K   I  
Sbjct: 234 LGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVE 293

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           A  +F E  E D +++  +I   A +GR E++++ F+++ ++  +     F  +L+
Sbjct: 294 ARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLS 349


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 196/669 (29%), Positives = 338/669 (50%), Gaps = 87/669 (13%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K +++ S+ I+  +I+    S  +  Q +++H   I +  F    +   LI + +    +
Sbjct: 112 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLM 171

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A+ +F+    K++  +N ++ G +++ +F++    F  M + ++  + +T+  V    
Sbjct: 172 ENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAG- 230

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                                             Y Q G +  A  VF +        + 
Sbjct: 231 ----------------------------------YSQRGCSHEALNVFRQMIFSGSLPNC 256

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPK--------------KNVASWVSLIDGFMRKGD 245
           +    +++ C+ +G   + +E+     K              +++  + +LID + +   
Sbjct: 257 VTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRS 316

Query: 246 LKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVS 301
            K A  +F+ +P  E+ VV+WT MI G +Q G++  AL +F +M+    GV  N +T+  
Sbjct: 317 FKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISC 376

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKE 359
            L ACA + A+  G ++H Y+  +      A  +   L++MY+KCG+++ A  VF    +
Sbjct: 377 ILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQ 436

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           K  ++WT+M+ G  +HGR  +A+  F KM  +G  PD   FL +L AC + G V   L++
Sbjct: 437 KSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSY 496

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------------ 455
           FDSM  DY + P  +H+   ++LL+R G+  + ++                         
Sbjct: 497 FDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHS 556

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               ++++  KL+++  ++  SY L+SNIYA  GRWKDVAR+R LM++  IKK PG S++
Sbjct: 557 NVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWV 616

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGC 568
           +       F  G   H L+ +I++ LE ++   +  GY+P T + LH++ +EEK   L  
Sbjct: 617 QGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVE 676

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLALA+GL+ T PG  I+I K L +CGDCHS   Y SKI   EIV+RD +RFH+FK+
Sbjct: 677 HSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKN 736

Query: 628 GTCSCRDYW 636
           G+CSC  YW
Sbjct: 737 GSCSCGGYW 745



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 167/391 (42%), Gaps = 95/391 (24%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           MLR   R +  T P V K+   L     G   H LI  +G E + F+   L  MY + G 
Sbjct: 1   MLRAGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGS 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----------PKKN 229
              A  +FDE  ++   + V+ WN +++   K      A++LF  M           + +
Sbjct: 61  LEEASMIFDEITQRGI-DDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 230 VASWV-----------------------------------SLIDGFMRKGDLKKAGELFE 254
           + S V                                   +LID + + G ++ A ++F 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFN 179

Query: 255 QMPEKGVVSWTAMINGFSQNGE-----------------------------------AEK 279
            M  K VVSW AM+ G+SQ+G                                    + +
Sbjct: 180 MMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHE 239

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SC-----NDFGLKGA 332
           AL +F QM+ +G   N  T++S LSACA +GA   G+ +H Y   +C     NDFG +  
Sbjct: 240 ALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDE 299

Query: 333 ---IGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
              +  AL+DMY+KC + +AA  +F +   +E++++TWT MI G A +G    A++ F +
Sbjct: 300 DLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVE 359

Query: 388 MMYS--GTEPDGTVFLAILTACWYSGQVKLA 416
           M+    G  P+      IL AC +   +++ 
Sbjct: 360 MISEPYGVAPNAYTISCILMACAHLAAIRIG 390



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 125/263 (47%), Gaps = 14/263 (5%)

Query: 205 LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  C ++   R      G++     + NV    +L+  + R G L++A  +F+++ ++G
Sbjct: 16  VLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRG 75

Query: 261 ---VVSWTAMINGFSQNGEAEKALAMFFQML------DAGVRANDFTVVSALSACAKVGA 311
              V+SW ++++   ++  A  AL +F +M           R++  ++V+ L AC  + A
Sbjct: 76  IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKA 135

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           +     VH     N   L   +G AL+D YAKCG +E A  VF   + KD+++W AM+ G
Sbjct: 136 VPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAG 195

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            +  G ++ A + FK M       D   + A++      G    ALN F  M F   + P
Sbjct: 196 YSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSL-P 254

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQ 454
           +      V++  + +G  SQG +
Sbjct: 255 NCVTIISVLSACASLGAFSQGME 277


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  329 bits (843), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 184/519 (35%), Positives = 288/519 (55%), Gaps = 50/519 (9%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           + ++   L D +V  G    A +++      +      L   ++  C     LR+  E+ 
Sbjct: 94  NVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVH 153

Query: 223 GMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQN 274
               K  ++S     + +++ + + G+L  A  +FE+MPE    K  V WTAMI+GF +N
Sbjct: 154 SRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRN 213

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            E  +AL  F  M    VR N+FT+V  LSAC+++GALE G  VH+Y+   +  L   +G
Sbjct: 214 EEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVG 273

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL++MY++CG+I+ A  VF E K++D++T+  MI GL+++G+  QAI+ F+ M+     
Sbjct: 274 NALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLR 333

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P    F+ +L AC + G V      F SM  DY +EP ++H+  +V+LL RVG+  + Y 
Sbjct: 334 PTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAY- 392

Query: 455 NSQNSFTKLLQLKPKH---------------------------------PSSYVLLSNIY 481
                  + +++ P H                                   +YVLLS++Y
Sbjct: 393 ----DLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVY 448

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A+ G+WK+ A+VR  M+   ++K+PG S IEVN  +H F  G   H   + I+ KLE++ 
Sbjct: 449 ASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELN 508

Query: 540 AGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              R +GY P  E VL +I++ EKE AL  HSE+LA+ +GLI T P T I+++K L +C 
Sbjct: 509 RLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCY 568

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCHS +K  +KI++R++V+RD  RFHYF++G CSC DYW
Sbjct: 569 DCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/429 (24%), Positives = 196/429 (45%), Gaps = 43/429 (10%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           P  N  S+ K   ++ +  IISL+  S    Q+  IHAQ+I +       +  +L+ S S
Sbjct: 16  PHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNGHSQDPFMVFELLRSCS 75

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
              +IDYA  IF +    N++++  LI G   + ++   I  +  ML  S+ P+      
Sbjct: 76  KCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMAS 135

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + K+  S   L  GR +H   +K G+  +  VR+ + ++Y + G+   A +VF+E PE  
Sbjct: 136 ILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDV 195

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------AS 232
            ++  + W  +I+G  +   + +A+E F  M  +NV                        
Sbjct: 196 VAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGR 255

Query: 233 WV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
           WV                 +LI+ + R G + +A  +F++M ++ V+++  MI+G S NG
Sbjct: 256 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 315

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG- 334
           ++ +A+ +F  M+   +R  + T V  L+AC+  G ++ G ++ + ++  D+G++  I  
Sbjct: 316 KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMT-RDYGVEPQIEH 374

Query: 335 -TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
              +VD+  + G +E A  L+       D +    ++    +H   E   Q  K +   G
Sbjct: 375 YGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRG 434

Query: 393 TEPDGTVFL 401
               GT  L
Sbjct: 435 QADSGTYVL 443



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 95/203 (46%), Gaps = 5/203 (2%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +F+      V  +TA+I+GF  +G    A+ ++ +ML   +  +++ + S L AC  
Sbjct: 83  ASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMASILKACGS 142

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLT 364
             AL  G  VH+            +   ++++Y KCG +  A  VF E  E    KD + 
Sbjct: 143 QLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVC 202

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           WTAMI G   +    +A++ F+ M      P+    + +L+AC   G +++       MR
Sbjct: 203 WTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMR 262

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG 447
             + IE ++     ++N+ SR G
Sbjct: 263 -KFEIELNLFVGNALINMYSRCG 284



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 36/66 (54%)

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           +KC  I+ AS +F  T   ++  +TA+I G    G Y  AIQ + +M++    PD  +  
Sbjct: 75  SKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLMA 134

Query: 402 AILTAC 407
           +IL AC
Sbjct: 135 SILKAC 140



 Score = 47.8 bits (112), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 47/211 (22%), Positives = 92/211 (43%), Gaps = 17/211 (8%)

Query: 58  NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
           NLF    +   LI+  S   SID A ++FD    +++  +N +I GL+ N   +  I  F
Sbjct: 269 NLF----VGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELF 324

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
             M+   +RP  +T+  V  + +   L+  G +  H +    GVE        + D+  +
Sbjct: 325 RVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGR 384

Query: 177 LGKTRGAF---KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-- 231
           +G+   A+   +    TP+       ++   L++ C     L    ++  ++  +  A  
Sbjct: 385 VGRLEEAYDLIRTMKMTPDH------IMLGTLLSACKMHKNLELGEQVAKVLEDRGQADS 438

Query: 232 -SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
            ++V L   +   G  K+A ++  +M E G+
Sbjct: 439 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGM 469


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 202/589 (34%), Positives = 297/589 (50%), Gaps = 86/589 (14%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           S+ P R  Y  +      L  L  GR +H  I  S  E D  +   + +MY + G    A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK--------- 228
             +FD+ P K+    ++ W VLI+G S+ G   +A+ LF      G  P +         
Sbjct: 160 QDLFDKMPTKD----MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                   NV    SL+D + R   +++A  +F  +  K VVSW
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A+I G ++ GE E  + +F QML  G     FT  S  +ACA  G+LE G  VH ++  
Sbjct: 276 NALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIK 335

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +       IG  L+DMYAK G+I+ A  VF    ++D+++W ++I G A HG   +A+Q 
Sbjct: 336 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 395

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F++M+ +  +P+   FL++LTAC +SG +     +F+ M+  + IE  V HH  VV+LL 
Sbjct: 396 FEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLG 454

Query: 445 RVGQDSQGYQNSQNSFT---------------------------------KLLQLKPKHP 471
           R G+      N  N F                                  ++ +L P   
Sbjct: 455 RAGR-----LNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDS 509

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             +VLLSNIYA+ GR  D A+VR +M+   +KK+P  S++E+   VH F A    H + +
Sbjct: 510 GPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMRE 569

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           EI    E I    +E GY+P T  VL  + ++++E  L  HSEKLALAF +++T PG TI
Sbjct: 570 EIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTI 629

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I K + ICGDCHS  K+AS++  REI++RDT RFH+F  G CSCRDYW
Sbjct: 630 RIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 54/341 (15%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + ++    +  S    RQ+HA  + +    +  + + L+   +    +  A  IF
Sbjct: 205 NEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIF 264

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    KN+  +N LI G A     +  +  F+ MLR    P   TY  V  + AS   L 
Sbjct: 265 NSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLE 324

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  ++KSG +  A++   L DMY + G  + A KVF    +++    ++ WN +I
Sbjct: 325 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQD----IVSWNSII 380

Query: 207 NGCSKIGYLRKAVELFGMMPK--------------------------------------- 227
           +G ++ G   +A++LF  M K                                       
Sbjct: 381 SGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIE 440

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-WTAMINGFSQNGEAEKALAMFFQ 286
             VA  V+++D   R G L +A +  E+MP K   + W A++     +   +  +    Q
Sbjct: 441 AQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQ 500

Query: 287 ML-----DAG---VRANDFTVVSALSACAKVGAL--EAGVR 317
           +      D+G   + +N +     LS  AKV  +  E+GV+
Sbjct: 501 IFELDPHDSGPHVLLSNIYASAGRLSDAAKVRKMMKESGVK 541


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 211/683 (30%), Positives = 343/683 (50%), Gaps = 80/683 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSI 85
           N +  T ++    S  + ++ + IH++I     L     +   L++  +   S++ A  +
Sbjct: 120 NPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRL 179

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+  + +++  +N +I   A++ HF+  I  +  M    V P+  T+  V  + ++L LL
Sbjct: 180 FERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGLL 236

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             GR +H LI   G E D  ++  L  MY +      A K+F   P ++    V+ W+ +
Sbjct: 237 DQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRD----VVSWSAM 292

Query: 206 ING-----------------------------------CSKIGYLR--KAV--ELFGMMP 226
           I                                     C+ +G LR  +AV  ++ G   
Sbjct: 293 IAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY 352

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           K  + +  +L+D +   G L +A  LF+Q+  +    WT +I G+S+ G     L ++ +
Sbjct: 353 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 412

Query: 287 MLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           M +   V A        +SACA +GA     + H+ I  +       + T+LV+MY++ G
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWG 472

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           N+E+A  VF +   +D L WT +I G A HG +  A+  +K+M   G EP    F+ +L 
Sbjct: 473 NLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLY 532

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNSQ----NS 459
           AC ++G  +     F S++ DY + P++ H++ +++LLSR G+  D++   N+     N 
Sbjct: 533 ACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPND 592

Query: 460 FT----------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
            T                      ++ +L P  P+SYVLLSN++A  G    +A VR  M
Sbjct: 593 VTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTM 652

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
             R +KK  G S+IEV   +H F  G   H   +EI ++L+ +    +E GY+P +E VL
Sbjct: 653 VARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVL 712

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H++ E EKE  L  HSEKLA+AFGLI T PGTT++I   L IC DCHS +K+ S I++RE
Sbjct: 713 HDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARRE 772

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           I++RD +RFH F+DG CSC DYW
Sbjct: 773 IIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 209/456 (45%), Gaps = 53/456 (11%)

Query: 33  HIISLIHSSNSTKQLRQIHAQI---ILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           H    +      + +RQIH +I      N+F    +  +++ +     S+  A + FD  
Sbjct: 29  HYRDALRQCQDLESVRQIHDRISGAASANVF----LGNEIVRAYGKCGSVASARAAFDAI 84

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             KN + +  ++   A+N H+++ +  +    R+ ++PN + Y  V  + AS+  L  G+
Sbjct: 85  ARKNDYSWGSMLTAYAQNGHYRAALDLYK---RMDLQPNPVVYTTVLGACASIKALEEGK 141

Query: 150 GLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
            +H  I  + G++ D  +   L  MY + G    A ++F    E+    SV  WN +I  
Sbjct: 142 AIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLF----ERMSGRSVSSWNAMIAA 197

Query: 209 CSKIGYLRKAVELFGMMP-KKNVASWVSLID-----GFMRKGD----------------- 245
            ++ G+  +A+ L+  M  + +V ++ S++      G + +G                  
Sbjct: 198 YAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSL 257

Query: 246 -------------LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
                        L  A ++F+++P + VVSW+AMI  F++    ++A+  + +M   GV
Sbjct: 258 QNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGV 317

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           R N +T  S L ACA VG L AG  VH+ I  N + +    GTALVD+Y   G+++ A  
Sbjct: 318 RPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARS 377

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG 411
           +F + + +D   WT +I G +  G     ++ +++M  +   P    ++  +++AC   G
Sbjct: 378 LFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLG 437

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
               A      +  D  I   V   T +VN+ SR G
Sbjct: 438 AFADARQAHSDIEADGMISDFVL-ATSLVNMYSRWG 472



 Score = 39.3 bits (90), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 35/226 (15%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P+  I  + +IS   S  +    RQ H+ I    + +   + T L++  S   +++ A  
Sbjct: 420 PATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQ 479

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD  + ++   +  LI G A++      +  +  M      P+ LT+  V  + +   L
Sbjct: 480 VFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGL 539

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
              G+ L        ++ D  +  ++A                              ++ 
Sbjct: 540 QEQGKQLFI-----SIQSDYAMHPNIAH-----------------------------YSC 565

Query: 205 LINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKA 249
           +I+  S+ G L  A EL   MP + N  +W SL+       D+K+A
Sbjct: 566 IIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRA 611


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 198/625 (31%), Positives = 317/625 (50%), Gaps = 75/625 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F     K+   +N +I G A+    ++ +  F+ M+   V P+ L+     ++   
Sbjct: 276 ARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQ 334

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              L +G+ +H  ++ SG E D      L DMY + G    A +VFD T    K +  + 
Sbjct: 335 SGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTT----KCKDSVT 390

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP---KKNVASWV------------------------ 234
           WN LING ++ GY ++ +E F MM    K +  ++V                        
Sbjct: 391 WNSLINGYTQSGYYKEGLESFKMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK 450

Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                      SL+D + + G++    ++F  M    ++SW  +I       +      M
Sbjct: 451 FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQM 510

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
             +M   G+  ++ TV+  L  C+ +     G  +H YI  + F     IG AL++MY+K
Sbjct: 511 INEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSK 570

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           CG++E    VF   KEKD++TWTA+I    ++G  ++A++ F+ M  SG  PD   F+A 
Sbjct: 571 CGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAF 630

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ------------ 451
           + AC +SG VK  L FFD M+ DY +EP ++H+  VV+LL+R G  +Q            
Sbjct: 631 IFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKP 690

Query: 452 ---------------GYQN-SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                          G  N +Q    K+L+L       YVL+SNIYA  G+W  V  VR 
Sbjct: 691 DASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRN 750

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAK--EIHSKLEDIMAGAREQGYMPGTEW 553
            M+ + +KK+PG S+IE+   V+ F  G     +  ++   LE ++    ++GY+   ++
Sbjct: 751 SMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQF 810

Query: 554 VLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
            LH+++E+ +  + C HSE+LA+AFGL+ T PG+ + ++K L +CGDCH++ KY +KI Q
Sbjct: 811 ALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQ 870

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
           REI++RD  RFH FKDG CSC D+W
Sbjct: 871 REILVRDANRFHRFKDGACSCGDHW 895



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/429 (28%), Positives = 207/429 (48%), Gaps = 46/429 (10%)

Query: 17  TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
           +N  ++ +PS     + ++  + S+ +T QLR +H+ II   L  S   + +LIS  +  
Sbjct: 8   SNFNNTPEPSQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQV 67

Query: 77  KSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
           K    ++S+F   +P  N++++N +IR L  N  F   + ++  M    ++P+  T+P V
Sbjct: 68  KDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSV 127

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
             S A +  L LG  +H   ++ G E D ++   L DMY +      A  VF+E   ++ 
Sbjct: 128 INSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDS 187

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSL------------- 236
               + WN LI+G    G+   A++++      GM+P     S V L             
Sbjct: 188 ----VSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVA 243

Query: 237 IDGFMRK----GD----------------LKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           + G + K    GD                L++A  +F +M  K  V+W  MI G++Q G 
Sbjct: 244 VHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGR 303

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            E ++ +F  M+D G   +  ++ S + AC + G L+ G  VH Y+  + F         
Sbjct: 304 HEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNI 362

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+DMYAKCG++ AA  VF  TK KD +TW ++I G    G Y++ ++ F KMM    +PD
Sbjct: 363 LIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPD 421

Query: 397 GTVFLAILT 405
              F+ +L+
Sbjct: 422 SVTFVLLLS 430



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 101/382 (26%), Positives = 154/382 (40%), Gaps = 55/382 (14%)

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           R +H LI+ SG+         L   Y Q+     +  VF      N   +V LWN +I  
Sbjct: 39  RTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTN---NVYLWNSIIRA 95

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWV---------------------------------- 234
            +  G   +A+  +  M +K +                                      
Sbjct: 96  LTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESD 155

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +LID + R  DL  A  +FE+M  +  VSW ++I+G+  NG  E AL M+ +   
Sbjct: 156 LYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRM 215

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNI 347
            G+  + FT+ S L AC  + A++ GV VH  I     G+ G   IG  L+ MY K   +
Sbjct: 216 TGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI--EKIGIAGDVIIGNGLLSMYFKFERL 273

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             A  VF +   KD +TW  MI G A  GR+E +++ F  M+  G  PD     + + AC
Sbjct: 274 REARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLFMDMI-DGFVPDMLSITSTIRAC 332

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
             SG +++           Y I    +  TV  N+L  +         +Q  F      K
Sbjct: 333 GQSGDLQVG-----KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFD---TTK 384

Query: 468 PKHPSSYVLLSNIYAAEGRWKD 489
            K   ++  L N Y   G +K+
Sbjct: 385 CKDSVTWNSLINGYTQSGYYKE 406


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 189/530 (35%), Positives = 293/530 (55%), Gaps = 37/530 (6%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDY 81
           S++     I+S    + S  +L Q HA I+    +H+ FA+SR+    +S+ S  ++I Y
Sbjct: 2   SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIAS-VSTNSHAQAIPY 60

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A SIF      N +++N +IR  A +   ++ ++ F  ML  SV P++ T+ F  KS  S
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            S +  GR +H  ++K+G+  D F++  L  +Y   G    A  + D   E++    V+ 
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGCIEDARHLLDRMLERD----VVS 176

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           WN L++  ++ G +  A  LF  M ++NV SW  +I G++  G L++A  +F + P K V
Sbjct: 177 WNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGVGLLEEARRVFGETPVKNV 236

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW AMI G+S  G   + L +F  M  AGV+ ++ T+VS LSACA VGAL  G  VH Y
Sbjct: 237 VSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAY 296

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  N   + G + TALVDMY+KCG+IE A  VF     KD+ TW ++I GL+ HG  + A
Sbjct: 297 IDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 356

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +Q F +M+  G +P+   F+ +L+AC  +G +      F+ M   + I+P+++H+  +V+
Sbjct: 357 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVD 416

Query: 442 LLSRVG----------------------------QDSQGYQNSQNSFTKLLQLKPKHPSS 473
           LL RVG                            ++    + ++    KLL+L P+  SS
Sbjct: 417 LLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESSS 476

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           +V LSN+YA+ GRWKDV  VR  M+ + ++KDPG S IEV+G V+ F AG
Sbjct: 477 FVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAG 526


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 220/678 (32%), Positives = 339/678 (50%), Gaps = 67/678 (9%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N  T    +     S+  K   +IHA I+  N      +   L++       + YA  I
Sbjct: 110 ANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARI 169

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    K+   +N +I G  +N  +   +  F  +   +++P+ ++   +  +   L  L
Sbjct: 170 FDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYL 229

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------- 194
             G+ +H   +K+ ++ +  +   L DMY +      A  VFD+   K+           
Sbjct: 230 LNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAY 289

Query: 195 -----KSESV-LLWNVLING--------------CSKIGYLRKAVELFGMMPKKNVASWV 234
                 +E++ LL  V   G              CS +  L  A E+ G   K+ ++  +
Sbjct: 290 AQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSDLM 349

Query: 235 S---LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
               +ID +   G++  A  +FE +  K VVSWT+MI+ +  NG A +AL +F+ M +  
Sbjct: 350 MQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETS 409

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           V  +  T+VS LSA A + AL  G  +H +I    F L+G+   +LVDMYA CG++E A 
Sbjct: 410 VEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAY 469

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF  T+ K L+ WT MI    +HGR + A++ F  M      PD   FLA+L AC +SG
Sbjct: 470 KVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHSG 529

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------- 458
            +       ++M+  Y +EP  +H+  +V+LL R     + Y   ++             
Sbjct: 530 LINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAF 589

Query: 459 ---------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                          +  KLL L P  P SYVL+SN++AA GRWKDV  VR  M+   +K
Sbjct: 590 LGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLK 649

Query: 504 KDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAG-AREQGYMPGTEWVLHNI-K 559
           K+PG S+IEV   VH F      H  + +I+ KL  I     +E GY+P T+ VLHN+ K
Sbjct: 650 KNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGK 709

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EEK + L  HSE+LA+A+GL+ T+ GT I+I K L +C DCH+  K  SK  +RE+++RD
Sbjct: 710 EEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVRD 769

Query: 620 -TRFHYFKDGTCSCRDYW 636
            +RFH+F+DG CSC D+W
Sbjct: 770 ASRFHHFEDGVCSCGDFW 787



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 151/327 (46%), Gaps = 42/327 (12%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M  L V  +  T+P V K+   +  +  G  +H LI+K G +   FV   L  MY +   
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----- 234
             GA K+FD   E+N    V+ WN +I+  S  G   +A+ LF  M K  V +       
Sbjct: 61  ILGARKLFDRMNERN---DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVA 117

Query: 235 ----------------------------------SLIDGFMRKGDLKKAGELFEQMPEKG 260
                                             +L+   +R G +  A  +F+++ EK 
Sbjct: 118 ALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKD 177

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            ++W +MI GF+QNG   +AL  F  + DA ++ ++ +++S L+A  ++G L  G  +H 
Sbjct: 178 NITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHA 237

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y   N       IG  L+DMY+KC  +  A LVF +   KDL++WT +I   A +  + +
Sbjct: 238 YAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTE 297

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A++  +K+   G + D  +  + L AC
Sbjct: 298 ALKLLRKVQTKGMDVDTMMIGSTLLAC 324



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 171/398 (42%), Gaps = 51/398 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAEN 107
           +IH  II     +   +   L+S  +    I  A  +FD    +N  + +N +I   + N
Sbjct: 31  EIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLN 90

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M +  V  N  T     ++    S   LG  +H  I+KS    D +V 
Sbjct: 91  GQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVA 150

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  M+V+ GK   A ++FDE  EK+     + WN +I G ++ G   +A++ F  +  
Sbjct: 151 NALVAMHVRFGKMSYAARIFDELDEKDN----ITWNSMIAGFTQNGLYNEALQFFCGLQD 206

Query: 228 KNV-------------------------------ASWV--------SLIDGFMRKGDLKK 248
            N+                                +W+        +LID + +   +  
Sbjct: 207 ANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAY 266

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           AG +F++M  K ++SWT +I  ++QN    +AL +  ++   G+  +   + S L AC+ 
Sbjct: 267 AGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSG 326

Query: 309 VGALEAGVRVHNYI---SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           +  L     VH Y      +D  ++  I    +D+YA CGNI  A+ +F   K KD+++W
Sbjct: 327 LRCLSHAKEVHGYTLKRGLSDLMMQNMI----IDVYADCGNINYATRMFESIKCKDVVSW 382

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           T+MI     +G   +A+  F  M  +  EPD    ++I
Sbjct: 383 TSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSI 420



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 122/219 (55%), Gaps = 8/219 (3%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  C  +  + +  E+ G++ K    S V    SL+  + +  D+  A +LF++M E+ 
Sbjct: 16  VLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERN 75

Query: 261 -VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            VVSW ++I+ +S NG+  +AL +F +M  AGV AN +T+V+AL AC      + G+ +H
Sbjct: 76  DVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDSSFKKLGMEIH 135

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             I  ++  L   +  ALV M+ + G +  A+ +F E  EKD +TW +MI G   +G Y 
Sbjct: 136 AAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYN 195

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
           +A+Q+F  +  +  +PD    ++IL A   SG++   LN
Sbjct: 196 EALQFFCGLQDANLKPDEVSLISILAA---SGRLGYLLN 231



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 1/128 (0%)

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           GV  + FT    L AC  V  +  G  +H  I    +     +  +LV MYAKC +I  A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 351 SLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
             +F    E+ D+++W ++I   +++G+  +A+  F++M  +G   +    +A L AC  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 410 SGQVKLAL 417
           S   KL +
Sbjct: 125 SSFKKLGM 132


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/446 (38%), Positives = 271/446 (60%), Gaps = 37/446 (8%)

Query: 227 KKNVASWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           ++N     +++D + + G  DL+ A ++F+ M E+ VVSW +MI  ++QNG + +A+ ++
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 285 FQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            +ML+   G++ N   + + L ACA  GA++ G R+HN +          +GT++VDMY+
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG +E AS  F + KEK++L+W+AMI G  +HGR ++A++ F +M  SG  P+   F++
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC ++G +     ++++M+ ++ IE  V+H+  +V+LL R G   + Y         
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              + ++ S  +L +L   +   YVLLSNIYA    WKDV R+R
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIR 528

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            L++ R I+K PG+S  E+ G ++ F  G   H    EI+S LE ++   +E GY+P T 
Sbjct: 529 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 588

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ +EEKE AL  HSEKLA+AF L+ + P + I I+K L +C DCH+ MK+ +KI+
Sbjct: 589 SVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 648

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +REI++RD  RFH+FKDG CSCRDYW
Sbjct: 649 EREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/265 (21%), Positives = 117/265 (44%), Gaps = 29/265 (10%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPF 134
           + ++ A  +FD    +++  +N +I   A+N      I  +  ML +   ++ N +    
Sbjct: 249 RDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSA 307

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           V  + A    +  G+ +H  +V+ G+E + +V   + DMY + G+   A + F +  EKN
Sbjct: 308 VLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKN 367

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAG 250
               +L W+ +I G    G  ++A+E+F  M     + N  +++S++      G L +  
Sbjct: 368 ----ILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGR 423

Query: 251 ELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             +  M      E GV  +  M++   + G  ++A ++  +M    V+ +     + LSA
Sbjct: 424 YWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEM---KVKPDAAIWGALLSA 480

Query: 306 CAKVGALEAGVRVHNYISCNDFGLK 330
           C          R+H  +   +  +K
Sbjct: 481 C----------RIHKNVELAEMSVK 495



 Score = 43.9 bits (102), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IH Q++   L  +  + T ++   S    ++ A   F     KN+  ++ +I G   +
Sbjct: 322 KRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 381

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-----VKSGVEY 162
              Q  +  F  M R  +RPN +T+  V  + +   LL  GR  +  +     +++GVE 
Sbjct: 382 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVE- 440

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
                 H   M   LG+     + +    E        +W  L++ C     + K VEL 
Sbjct: 441 ------HYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACR----IHKNVELA 490

Query: 223 GMMPKK 228
            M  K+
Sbjct: 491 EMSVKR 496


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 168/474 (35%), Positives = 273/474 (57%), Gaps = 35/474 (7%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D F    +   Y Q G    A +VFD  PE+N     + WN ++    +   + +A ELF
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERN----AVSWNAMVAAYIQRRMMDEAKELF 309

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
            MMP +NVASW +++ G+ + G L++A  +F+ MP+K  VSW AM+  +SQ G +E+ L 
Sbjct: 310 NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQ 369

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G   N       LS CA + ALE G+++H  +    +G+   +G AL+ MY 
Sbjct: 370 LFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYF 429

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCGN+E A   F E +E+D+++W  MI G A HG  ++A++ F  M  + T+PD    + 
Sbjct: 430 KCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVG 489

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC +SG V+  +++F SM  D+ +    +H+T +++LL R G+ ++ +         
Sbjct: 490 VLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFE 549

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              +  +++  K+ +L+P++   YVLLSNIYA+ G+W+D  ++R
Sbjct: 550 PDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMR 609

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            +M+ R +KK PG+S+IEV   VH F AG   H   ++I++ LED+    ++ GY+  T+
Sbjct: 610 VMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATD 669

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMK 605
            VLH++ +EEKE  L  HSEKLA+A+G++   PG  I+++K L +CGDCH+  K
Sbjct: 670 MVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 167/346 (48%), Gaps = 20/346 (5%)

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
           S+     +++  S +  +  A S+F      + + +N L+  LA +S        F  M 
Sbjct: 68  STSTYNAMLAGYSANGRLPLAASLFRAIPRPDNYSYNTLLHALAVSSSLADARGLFDEM- 126

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
              VR + +TY  +  S A+  L+SL R    L      E DA     +   YV+ G+  
Sbjct: 127 --PVR-DSVTYNVMISSHANHGLVSLARHYFDL----APEKDAVSWNGMLAAYVRNGRVE 179

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
            A  +F+   E +    V+ WN L++G  + G + +A ELF  MP ++V SW  ++ G+ 
Sbjct: 180 EARGLFNSRTEWD----VISWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYA 235

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           R+GD+ +A  LF+  P + V +WTA+++G++QNG  E+A  +F    DA    N  +  +
Sbjct: 236 RRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVF----DAMPERNAVSWNA 291

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            ++A  +   ++    + N + C +     A    ++  YA+ G +E A  VF    +KD
Sbjct: 292 MVAAYIQRRMMDEAKELFNMMPCRNV----ASWNTMLTGYAQAGMLEEAKAVFDTMPQKD 347

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            ++W AM+   +  G  E+ +Q F +M   G   + + F  +L+ C
Sbjct: 348 AVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTC 393



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 100/246 (40%), Gaps = 43/246 (17%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           +++ G+   A ++F   P ++ S     +N ++ G S  G L  A  LF  +P+ +  S+
Sbjct: 48  HMRAGRVADAERLFAAMPRRSTS----TYNAMLAGYSANGRLPLAASLFRAIPRPDNYSY 103

Query: 234 VSLIDGFMRKGDLKKAGELFEQMP-------------------------------EKGVV 262
            +L+        L  A  LF++MP                               EK  V
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFDLAPEKDAV 163

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SW  M+  + +NG  E+A  +F    +  V     +  + +S   + G +     + + +
Sbjct: 164 SWNGMLAAYVRNGRVEEARGLFNSRTEWDV----ISWNALMSGYVQWGKMSEARELFDRM 219

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              D          +V  YA+ G++  A  +F     +D+ TWTA++ G A +G  E+A 
Sbjct: 220 PGRDV----VSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEAR 275

Query: 383 QYFKKM 388
           + F  M
Sbjct: 276 RVFDAM 281



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 12/187 (6%)

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I   MR G +  A  LF  MP +   ++ AM+ G+S NG    A ++F     A  R ++
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLF----RAIPRPDN 100

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           ++  + L A A   +L     + + +   D          ++  +A  G +  A   F  
Sbjct: 101 YSYNTLLHALAVSSSLADARGLFDEMPVRD----SVTYNVMISSHANHGLVSLARHYFDL 156

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             EKD ++W  M+     +GR E+A   F     S TE D   + A+++     G++  A
Sbjct: 157 APEKDAVSWNGMLAAYVRNGRVEEARGLFN----SRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 417 LNFFDSM 423
              FD M
Sbjct: 213 RELFDRM 219


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 187/473 (39%), Positives = 274/473 (57%), Gaps = 38/473 (8%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVAS--WVS--LIDGFMRKGDLKKAGELFEQMP 257
           +  L+  C+++   R   +L G++ K  + S  +VS  LI  +   G   +A ++F +M 
Sbjct: 99  YPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMR 158

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++ VVSWT+MI+GF  +  A +A+ +F +M++ GV  N+ TVVS L ACA  GA+  G R
Sbjct: 159 DRDVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRR 218

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           V   I     GL+  + TAL+DMYAKCG+I +A  VF     KD+  WTAMI GLA HG 
Sbjct: 219 VQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGL 278

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            E+A+  F +M   G  PD     A+L+AC  +G       +F+SM   Y I+P+++H+ 
Sbjct: 279 CEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYG 338

Query: 438 VVVNLLSRVGQDSQGYQ---------------------------NSQNSFTK---LLQLK 467
            +V+LL+R G   +  +                           +      K   LL++ 
Sbjct: 339 CMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKMD 398

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GH 525
                SYVLL N+YA+ G+W D A++R LM ++ + K PG S IEV+G VH F AG  GH
Sbjct: 399 SDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSGH 458

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTP 584
             A++I++KL+++    + +GY P    VL  I  +EK   L  HSEKLA+AFGLI+T+P
Sbjct: 459 IEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTSP 518

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GT I+IVK L  C DCHS++K  SKI Q++I++RD  RFH+F +G CSC+DYW
Sbjct: 519 GTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 116/392 (29%), Positives = 183/392 (46%), Gaps = 52/392 (13%)

Query: 42  NSTKQLRQIHAQIILH-NLFASSRITTQLISSASLHKSID--YALSIFDHFTPKNLHIFN 98
            S  Q  Q+HAQI+   +    +R  T L + A+L  + D  YA  I +  + +N    N
Sbjct: 4   TSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHN 63

Query: 99  VLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
            +IR  ++       +  F+ ML    S RP++ TYPF+ KS A L    +G+ LH LI 
Sbjct: 64  TMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIY 123

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           KSG+E D +V   L  MY   GK+  A+KVF     K +   V+ W  +I+G        
Sbjct: 124 KSGLESDRYVSNGLIHMYSSCGKSGRAYKVFG----KMRDRDVVSWTSMIDGFVDDDRAL 179

Query: 217 KAVELFGMMPKKNV----ASWVS-----------------------------------LI 237
           +A+ LF  M +  V    A+ VS                                   LI
Sbjct: 180 EAIRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMGRRVQGVIEERKIGLEANVRTALI 239

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G +  A ++F+ +  K V +WTAMI+G + +G  E+A+ +F QM   G+R ++ 
Sbjct: 240 DMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDER 299

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVF 354
           T+ + LSAC   G    G    N + C  +G+K  I     +VD+ A+ G++ EA   + 
Sbjct: 300 TMTAVLSACRNAGWFSEGFAYFNSMWCK-YGIKPTIQHYGCMVDLLARTGHLDEAEEFIR 358

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
               E D++ W  +IW   +HG  +++ Q  K
Sbjct: 359 KMPIEPDVVLWRTLIWASKVHGDIDRSEQLMK 390



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 9/215 (4%)

Query: 211 KIGYLRKAVELFGMM-----PKKNVASWVSLID--GFMRKGDLKKAGELFEQMPEKGVVS 263
           +I  L +A++L   +     PKK   +   L         GDL  A  +   +  +    
Sbjct: 2   EITSLSQAMQLHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFF 61

Query: 264 WTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
              MI  +SQ  +  +AL +F  ML      R + FT    L +CA++     G ++H  
Sbjct: 62  HNTMIRAYSQTPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGL 121

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  +       +   L+ MY+ CG    A  VFG+ +++D+++WT+MI G     R  +A
Sbjct: 122 IYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMRDRDVVSWTSMIDGFVDDDRALEA 181

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           I+ F++M+  G EP+    +++L AC  +G V + 
Sbjct: 182 IRLFEEMVEDGVEPNEATVVSVLRACADAGAVGMG 216


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  328 bits (841), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 194/604 (32%), Positives = 311/604 (51%), Gaps = 67/604 (11%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           I T LI+  +  + I  A  +FD     +   +N++I G  +N H+   +  F  M    
Sbjct: 158 IQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSD 217

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           ++P+ +    V  +      LS GR +H  +  +G   D+ ++  L +MY   G    A 
Sbjct: 218 MKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLAR 277

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           K++D                                  G+  K  + S  +++ G+ + G
Sbjct: 278 KIYD----------------------------------GLSSKHLIVS-TAMLSGYAKLG 302

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            +K A  +F+QM E+ +V W+AMI+G++++ + ++AL +F +ML      +  T++S +S
Sbjct: 303 MVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVIS 362

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC+ VGAL     +H Y+  + FG   ++  AL+DMYAKCGN+  A  VF     K++++
Sbjct: 363 ACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVIS 422

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W++MI   A+HG  + AI+ F++M     EP+G  F+ +L AC ++G V+     F SM 
Sbjct: 423 WSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMI 482

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG----------------------------QDSQGYQNS 456
            ++ I P+ +H+  +V+L  R                              Q     +  
Sbjct: 483 NEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELG 542

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           + +  +LL+L+P H  + V+LSNIYA E RW DV  +R  M  + I K+   S IE+N  
Sbjct: 543 EFAAKRLLELEPDHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQ 602

Query: 517 VHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKL 573
           VH F      HK + EI+ KL+++++  +  GY P T  +L +++EE K+E +  HSEKL
Sbjct: 603 VHMFMMADRYHKQSDEIYEKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKL 662

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+ +GLI     + I+IVK L IC DCHS MK  SK+ Q EIV+RD TRFH+   G CSC
Sbjct: 663 AVCYGLISRRNESCIRIVKNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSC 722

Query: 633 RDYW 636
           RDYW
Sbjct: 723 RDYW 726



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 113/252 (44%), Gaps = 45/252 (17%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG---------DLKKAGELFEQ 255
           L+   SK+      +E+ G+  K          D F++ G          +  A  LF++
Sbjct: 127 LLKAVSKVSAFNHGLEIHGLASKLGFVD-----DPFIQTGLIAMYASCRRIMDARLLFDK 181

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           M     V+W  +I+G+ QNG  + AL +F  M  + ++ +   + + LSAC   G L  G
Sbjct: 182 MCHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYG 241

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGN----------------------------- 346
             +H ++  N + +   + TAL++MYA CG                              
Sbjct: 242 RTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKL 301

Query: 347 --IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
             ++ A  +F +  E+DL+ W+AMI G A   + ++A++ F +M+   + PD    L+++
Sbjct: 302 GMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVI 361

Query: 405 TACWYSGQVKLA 416
           +AC + G +  A
Sbjct: 362 SACSHVGALAQA 373



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 93/198 (46%), Gaps = 4/198 (2%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVG 310
           +F Q+P         ++   S++   EK + ++  +      A D F+  S L A +KV 
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           A   G+ +H   S   F     I T L+ MYA C  I  A L+F +    D + W  +I 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD-YFI 429
           G   +G Y+ A++ F+ M  S  +PD  +   +L+AC ++G +       + ++ + Y I
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 430 EPSVKHHTVVVNLLSRVG 447
           +  ++  T ++N+ +  G
Sbjct: 256 DSHLQ--TALINMYANCG 271


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 193/588 (32%), Positives = 311/588 (52%), Gaps = 86/588 (14%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL-----GK 179
           VRP+   YP + KS  +      G G H  ++K G   DAFVR  + DMY +        
Sbjct: 26  VRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDAFVRNAVIDMYARKVADWNAM 80

Query: 180 TRGAFK---------VFDETPEKN---------------------------KSESVLLWN 203
             G +K         +FD  PE+N                              SV+ WN
Sbjct: 81  VSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWN 140

Query: 204 VLINGCSKIGYLRKAVELFGMM--PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
            +++G ++ G   +A+ LF  M    +N  +W ++I  +MR GDL  A +LF  MP + V
Sbjct: 141 AMLSGYAQNGLAEEALRLFDEMLGAYRNSVTWNAMISAYMRVGDLDSARKLFNTMPGRNV 200

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHN 320
           V+W +MI G++QNG++  A+ +F +M+ A  +  ++ T+VS +SAC  +GALE G  V  
Sbjct: 201 VTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVR 260

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           +++ N   L  +   A++ MY++CG++E A  VF E   +D++++  +I G A HG   +
Sbjct: 261 FLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVE 320

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI     M   G EPD   F+ +LTAC ++G ++     F+S++     +P++ H+  +V
Sbjct: 321 AINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMV 375

Query: 441 NLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPS 472
           +LL RVG+     +  +                             +  KL +L+P +  
Sbjct: 376 DLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSG 435

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           +++LLSNIYA+ GRWKDV R+R  M++  +KK  GWS++E  G +H+F      H+ + +
Sbjct: 436 NFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDD 495

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIK 589
           I+  L ++    RE GY+     VL +++EE++E + G HSEKLA+ + L+ +  G  I+
Sbjct: 496 IYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIR 555

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +VK L +C DCH+ +K  SK+  R I++RD  RFH F DG CSC+DYW
Sbjct: 556 VVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 27/173 (15%)

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M+  +S   +  K + M+ QM   GVR + F V   L   A  G    G+  H ++    
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAF-VYPILIKSAGTG----GIGFHAHVLKLG 55

Query: 327 FGLKGAIGTALVDMYA-KCGNIEA-------------ASLVFGETKEKDLLTWTAMIWGL 372
            G    +  A++DMYA K  +  A             A  +F    E++++TWTAM+ G 
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSM 423
           A     E A +YF  M      P+ +V  + A+L+    +G  + AL  FD M
Sbjct: 116 AKVKDLEAARRYFDCM------PERSVVSWNAMLSGYAQNGLAEEALRLFDEM 162


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  328 bits (840), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 192/592 (32%), Positives = 313/592 (52%), Gaps = 67/592 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
           +D ALS+F++   + +  +N +I G  +N      +  F  ML  S + P+  T   V  
Sbjct: 244 MDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLS 303

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A+L ++S+G+ +H  I++S + Y   V   L  MY + G    A              
Sbjct: 304 ACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVENAR------------- 350

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                          G +++AV     M   NV S+ +L++G+++ GD+K A E+F+ M 
Sbjct: 351 ---------------GVMQQAV-----MADLNVISFTALLEGYVKLGDMKHAREMFDVMS 390

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            + VV+WTAMI G+ QNG  ++A+ +F  M+ +G   N +TV + LS CA +  LE G +
Sbjct: 391 NRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQ 450

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
           +H     +      ++  ++V MYA+ G++  A  VF      K+ +TWT+MI  LA HG
Sbjct: 451 IHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHG 510

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             E A+  F++M+  G +PD   F+ +L+AC + G V     +F  ++  + I P + H+
Sbjct: 511 LGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHY 570

Query: 437 TVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKP 468
             +V+LL+R G  S+  +  Q                             +  KLL + P
Sbjct: 571 ACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDP 630

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HK 526
            +  +Y  LSN+Y+A GRW D A++    + +S+KK+ G+S+  +   VH F A    H 
Sbjct: 631 GNSGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHP 690

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPG 585
               ++     +    ++ G++P  + VLH++ +E KEE L  HSEKLA+AFGL+ T   
Sbjct: 691 QRDTVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEK 750

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           TT++I+K L +C DCH+ +K+ SK++ REI+LRD TRFH+FKDG CSC+DYW
Sbjct: 751 TTLRIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 155/360 (43%), Gaps = 69/360 (19%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A ++F     ++   + V++ GL     F   I  F+ M+   + P + T   V  S A+
Sbjct: 115 ARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAA 174

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
                +GR +H  +VK G+     V   + +MY + G    A  VF+  PE+    SV  
Sbjct: 175 TEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPER----SVSS 230

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           WN +++  + +G +  A+ LF  MP + + SW                            
Sbjct: 231 WNAMVSLDAHLGRMDLALSLFENMPDRTIVSW---------------------------- 262

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHN 320
               A+I G++QNG   KAL  F +ML     A D FT+ S LSACA +G +  G +VH 
Sbjct: 263 ---NAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA 319

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLV--------------------------- 353
           YI  +     G +  AL+ MYAK G++E A  V                           
Sbjct: 320 YILRSRMPYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDM 379

Query: 354 ------FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                 F     +D++ WTAMI G   +G  ++A++ F+ M+ SG EP+     A+L+ C
Sbjct: 380 KHAREMFDVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVC 439



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 78/246 (31%), Positives = 125/246 (50%), Gaps = 14/246 (5%)

Query: 215 LRKAVELFGMMP--KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
            R+A  LF  +P  ++NV +W SL+  + + G L  A  +F +MPE+  VSWT M+ G +
Sbjct: 79  FREARRLFDEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLN 138

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           + G   +A+ MF  M+  G+    FT+ + LS+CA   A   G +VH+++     GL   
Sbjct: 139 RVGRFGEAIKMFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVV--KLGLSSC 196

Query: 333 IGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
           +  A  +++MY KCG+ E A  VF    E+ + +W AM+   A  GR + A+  F+ M  
Sbjct: 197 VPVANSVLNMYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENM-- 254

Query: 391 SGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
               PD T+  + A++     +G    AL FF  M     + P     T V++  + +G 
Sbjct: 255 ----PDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGM 310

Query: 449 DSQGYQ 454
            S G Q
Sbjct: 311 VSIGKQ 316



 Score = 45.8 bits (107), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 114/262 (43%), Gaps = 16/262 (6%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I+S  +P N+ T   ++S+  S    +  +QIH + I      SS ++  +++  +   S
Sbjct: 421 IRSGPEP-NSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGS 479

Query: 79  IDYALSIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           + +A  +FD  H+  + +  +  +I  LA++   +  +  F  MLR+ V+P+R+T+  V 
Sbjct: 480 LPWARRVFDRVHWRKETV-TWTSMIVALAQHGLGEDAVGLFEEMLRVGVKPDRITFVGVL 538

Query: 137 KSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
            +   +  +  G R    L  K G+  +      + D+  + G    A +   + P +  
Sbjct: 539 SACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQEFIQQMPVEPD 598

Query: 196 SESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           +   + W  L++ C           A E    +   N  ++ +L + +   G    A ++
Sbjct: 599 A---IAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACGRWNDAAKI 655

Query: 253 FEQMPEKGV-----VSWTAMIN 269
           +++  +K V      SWT + N
Sbjct: 656 WKRRKDKSVKKETGFSWTHIGN 677


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 221/701 (31%), Positives = 345/701 (49%), Gaps = 104/701 (14%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           R   AI     +       N    T I+ L+ S +  +    IHA I      +++ + T
Sbjct: 119 RFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGT 178

Query: 68  QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
            LI + S+   +D A  +FD    K++  +  ++   AEN  F+  +  F  M  +  +P
Sbjct: 179 ALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKP 238

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N  T+  V K+   L    +G+ +H   +KS  E D +V V L D+Y + G    A   F
Sbjct: 239 NNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAF 298

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK------------- 228
           +E P+K+    V+ W+ +I   ++    ++AVE+F  M      P +             
Sbjct: 299 EEIPKKD----VIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATM 354

Query: 229 ---NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKG-VVSWTAM 267
              N+ + +                 +L+D + + G ++ +  LF + P +  V  W  +
Sbjct: 355 EGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTV 414

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G  Q G+ EKAL +F  ML+  V+A + T  SAL ACA + ALE G+++H+      F
Sbjct: 415 IVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTF 474

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                +  AL+DMYAKCG+I+ A LVF    ++D ++W AMI G ++HG           
Sbjct: 475 DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG----------- 523

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
                             AC  +G +     +F SM  D+ IEP ++H+T +V LL R G
Sbjct: 524 -----------------LACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGG 566

Query: 448 Q--------DSQGYQNS--------------------QNSFTKLLQLKPKHPSSYVLLSN 479
                    D   +Q S                    + S   +L+++P+  +++VLLSN
Sbjct: 567 HLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSN 626

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLED 537
           +YA   RW +VA VR  M+R+ +KK+PG S+IE  G VH F  G   H   + I+  LE 
Sbjct: 627 MYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEW 686

Query: 538 IMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           +    ++ GY+P    VL +++ EEKE  L  HSE+LAL+FG+I+T  G+ I+I+K L I
Sbjct: 687 LHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRI 746

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           C DCH+ +K  SK+ QREIV+RD  RFH+F++G CSC DYW
Sbjct: 747 CVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 168/366 (45%), Gaps = 44/366 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N   F  LI+G AE+  F   I  FV + R     N   +  + K + S
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +    LG G+H  I K G E +AFV   L D Y   G+   A +VFD    K+    ++ 
Sbjct: 152 MDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKD----MVS 207

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----KKNVASW------------------------ 233
           W  ++   ++    ++A++LF  M     K N  ++                        
Sbjct: 208 WTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCAL 267

Query: 234 -----------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                      V+L+D + + GD+  A   FE++P+K V+ W+ MI  ++Q+ ++++A+ 
Sbjct: 268 KSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVE 327

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MFFQM  A V  N FT  S L ACA +  L  G ++H ++          +  AL+D+YA
Sbjct: 328 MFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA 387

Query: 343 KCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           KCG +E +  +F E+  + D+  W  +I G    G  E+A++ F  M+    +     + 
Sbjct: 388 KCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYS 447

Query: 402 AILTAC 407
           + L AC
Sbjct: 448 SALRAC 453



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 140/301 (46%), Gaps = 43/301 (14%)

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S G+GLHC I+K G   D F    L +MYV+      A K+FDE PE+N    V     L
Sbjct: 55  SRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFV----TL 110

Query: 206 INGCSKIGYLRKAVELFGMMPKK------------------------------------- 228
           I G ++     +A+ELF  + ++                                     
Sbjct: 111 IQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGH 170

Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
             N     +LID +   G +  A E+F+ +  K +VSWT M+  F++N   ++AL +F Q
Sbjct: 171 ESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQ 230

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M   G + N+FT  S   AC  + A + G  VH     + + L   +G AL+D+Y K G+
Sbjct: 231 MRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGD 290

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I+ A   F E  +KD++ W+ MI   A   + ++A++ F +M  +   P+   F ++L A
Sbjct: 291 IDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQA 350

Query: 407 C 407
           C
Sbjct: 351 C 351



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 98/193 (50%), Gaps = 7/193 (3%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           ++ +W  L++ +++   L  A +LF++MPE+  +S+  +I G++++    +A+ +F ++ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G   N F   + L     +   E G  +H  I          +GTAL+D Y+ CG ++
Sbjct: 132 REGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVD 191

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF     KD+++WT M+   A +  +++A++ F +M   G +P+   F ++  AC 
Sbjct: 192 VAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC- 250

Query: 409 YSGQVKLALNFFD 421
                 L L  FD
Sbjct: 251 ------LGLEAFD 257


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 200/588 (34%), Positives = 316/588 (53%), Gaps = 80/588 (13%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           S+ P+R  Y  + K    L  L  G+ +H  ++ S    D  ++  +  MY + G    A
Sbjct: 86  SLEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIA 145

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE---LF------GMMP-------- 226
            +VFDE   K+    V+ W  +I G S+ GY   A     LF      G+ P        
Sbjct: 146 RQVFDEMCVKD----VVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSL 201

Query: 227 -------------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                                    ++NV    SL+D + R G+L+++  +F+++  K  
Sbjct: 202 VKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNE 261

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW A+I+GF++ GE E+AL +F +M   G  A +FT  + L + +  G+LE G  +H +
Sbjct: 262 VSWNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAH 321

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +  +   L G +G  L+ MYAK GNI  A  VF    + D+++  +M+ G A HG  ++A
Sbjct: 322 MMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEA 381

Query: 382 IQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           ++ F++MM +   EP+   FL++LTAC ++G +   L +F+ M+  Y +EP + H+T VV
Sbjct: 382 VELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMK-KYGLEPKLSHYTTVV 440

Query: 441 NLLSRVGQDSQG-------------------------YQNSQ---NSFTKLLQLKPKHPS 472
           +L  R G   Q                          ++N++    +  K+L+L P +P 
Sbjct: 441 DLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPG 500

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           ++ LLSNIYA+ G+WKDVA+VR  M+   +KK+P  S++E+   VH F A    H    +
Sbjct: 501 AHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNK 560

Query: 531 IHSKLEDIMAGAREQGYMPGTEWV-LHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           ++   E++    +E GY+P T  V +   ++EKE  L  HSEKLALAF L+ T PG+ I+
Sbjct: 561 VYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIR 620

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I+K + +CGDCHS +KY S + +REI++RDT RFH+F+DG+CSCRDYW
Sbjct: 621 IMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 135/323 (41%), Gaps = 23/323 (7%)

Query: 58  NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117
           N+F  S +         L +S      +FD    KN   +N LI G A     +  +  F
Sbjct: 229 NVFVGSSLVDMYARCGELRES----RLVFDELESKNEVSWNALISGFARKGEGEEALGLF 284

Query: 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177
           V M R        TY  +  S ++   L  G+ LH  ++KSG +   +V   L  MY + 
Sbjct: 285 VKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAKS 344

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-----KKNVAS 232
           G    A KVFD   + +    V+  N ++ G ++ G  ++AVELF  M      + N  +
Sbjct: 345 GNICDAKKVFDRLVKVD----VVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDIT 400

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQML 288
           ++S++      G L +    FE M + G+      +T +++ F + G  ++A +   +M 
Sbjct: 401 FLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEM- 459

Query: 289 DAGVRANDFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
              +  N  T+  AL   +K+    E G      +   D    GA  T L ++YA  G  
Sbjct: 460 --PIEPNA-TIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGA-HTLLSNIYASAGQW 515

Query: 348 EAASLVFGETKEKDLLTWTAMIW 370
           +  + V  E K+  L    A  W
Sbjct: 516 KDVAKVRKEMKDSGLKKEPACSW 538


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  328 bits (840), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 188/502 (37%), Positives = 279/502 (55%), Gaps = 39/502 (7%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSE-SVLLWNVLINGCSKIGYLRKAVELF------GMMP 226
           Y   G+ + A  +F       + E + + +  + N C  I  L +  E+       G + 
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
             N     +L++ ++R G L++A ++F+ M      SWT+MI   ++N E  +AL +F +
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHR 180

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M   G+     T+ S L+ACA  GAL+ G ++H+ +  + F       TAL+DMYAKCG+
Sbjct: 181 MNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGS 240

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +E +S VF   + ++ ++WTAMI  LA HG+ ++A++ FK+M   G   D T F+ +L A
Sbjct: 241 LECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRA 300

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQNSFTKLL 464
           C ++G +K +L FF SM  DY I P+  H+   ++ + R G  QD++   +S     + L
Sbjct: 301 CSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETL 360

Query: 465 --------------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                                     +L P+   +Y LL N+YAA GR+ D  RVR  M 
Sbjct: 361 TWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMT 420

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
            R +KK PG S+IEV   VH F AG   H    EI  +LE +    RE GY+P T+ VLH
Sbjct: 421 DRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVLH 480

Query: 557 NI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
            + +EEKE+ +G HSEKLA+AFGLI T PGT + IVK L +C DCH+  K  +KI +R I
Sbjct: 481 AVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRRI 540

Query: 616 VLRDT-RFHYFKDGTCSCRDYW 636
           V+RDT RFH+F+DG CSC+DYW
Sbjct: 541 VVRDTHRFHHFEDGQCSCKDYW 562



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 4/215 (1%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
           L+  + + G L +A  +F  + E+ VVSW+AMI  ++ +G  ++AL +F +M + G V  
Sbjct: 26  LVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALHGRGQEALLLFHRMRNDGRVEP 85

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAI-GTALVDMYAKCGNIEAASL 352
           N  T     +AC  +  LE G  +H   ++  +     AI   AL++MY +CG++E A  
Sbjct: 86  NAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARK 145

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF      D  +WT+MI     +    +A++ F +M   G  P      ++L AC  SG 
Sbjct: 146 VFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGA 205

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           +K+       +    F   SV   T ++++ ++ G
Sbjct: 206 LKVGKQIHSRLDASGF-HSSVLAQTALLDMYAKCG 239



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 1/97 (1%)

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           +E G R+H+ +S   F         LV MYAKCG ++ A  +F    E+ +++W+AMI  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 372 LAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTAC 407
            A+HGR ++A+  F +M   G  EP+   F  +  AC
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNAC 97



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/293 (20%), Positives = 109/293 (37%), Gaps = 39/293 (13%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASLHKSIDYALS 84
           N +T T + +        +Q R+IHA  +      SS   +   L++      S++ A  
Sbjct: 86  NAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARK 145

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD     +   +  +I    EN      +  F  M    + P  +T   V  + A    
Sbjct: 146 VFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGA 205

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK--------- 195
           L +G+ +H  +  SG       +  L DMY + G    + KVF     +N          
Sbjct: 206 LKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAA 265

Query: 196 -------SESVLLWN---------------VLINGCSKIGYLRKAVELFGMMPKKNVAS- 232
                   E++ L+                 ++  CS  G +++++E F  M +    + 
Sbjct: 266 LAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAP 325

Query: 233 ----WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKA 280
               +   +D   R G L+ A EL   MP     ++W  ++N    + +AE+A
Sbjct: 326 TETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERA 378


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 196/564 (34%), Positives = 300/564 (53%), Gaps = 77/564 (13%)

Query: 148 GRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS---------- 196
           GR LH L ++SG+   D F    L  MY    +   A K FDE P  N            
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 197 ------ESVLLWNVLINGCSKIGYLRKAVELFGM-----MPKKNVASWV----------- 234
                  S+ L+  LI   S    + +A  L        +P   + S +           
Sbjct: 168 RNNLVYPSLALFRKLIASGSATA-VDEAAALVAFSASARIPDCGITSSLHALVVKTGLDG 226

Query: 235 ------SLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                 +++D + + G  DL  A ++F+ M EK VVSW +MI  ++QNG +  AL ++ +
Sbjct: 227 DAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGLYRK 285

Query: 287 MLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
           ML+    ++ N  T+ + L ACA  G ++ G  +HN +          +GT++VDMY+KC
Sbjct: 286 MLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKC 345

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +E A   F + KEK++L+W+AMI G  +HG  ++A+  F +M  SG  P+   F+++L
Sbjct: 346 GRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVL 405

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------- 453
            AC ++G +     ++++M+  + IEP V+H+  +V+LL R G   + Y           
Sbjct: 406 AACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPD 465

Query: 454 -----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                            + ++ S  +L +L   +   YVLLSNIYA  G WKDV R+R L
Sbjct: 466 AAIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVL 525

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           ++ R I+K PG+S +E+ G  H F  G   H   KEI+S L  ++   +E GY+P T  V
Sbjct: 526 VKTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSV 585

Query: 555 LHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           LH++ +EEK  AL  HSEKLA+AF L+ + PG+ I ++K L +C DCH+ +K  +KI+QR
Sbjct: 586 LHDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQR 645

Query: 614 EIVLRD-TRFHYFKDGTCSCRDYW 636
           EI++RD  RFH+FKDG+CSC DYW
Sbjct: 646 EIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 123/270 (45%), Gaps = 21/270 (7%)

Query: 50  IHAQIILHNLFASSRITTQLISSASL--HKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +HA ++   L   + +   ++ + +    + +  A  +FD    K++  +N +I   A+N
Sbjct: 215 LHALVVKTGLDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQN 273

Query: 108 SHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
                 +  +  ML +S  ++ N +T   +  + A    +  G+ +H  +V+ G+E + +
Sbjct: 274 GMSADALGLYRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVY 333

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   + DMY + G+   A K F +  EKN    +L W+ +I G    G+ ++A+++F  M
Sbjct: 334 VGTSVVDMYSKCGRVEMARKAFQKIKEKN----ILSWSAMITGYGMHGHGQEALDIFNEM 389

Query: 226 PK----KNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGE 276
            +     N  +++S++      G L K    +  M      E GV  +  M++   + G 
Sbjct: 390 CRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGC 449

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            ++A  +  +M    V+ +     + LSAC
Sbjct: 450 LDEAYGLIKEM---KVKPDAAIWGALLSAC 476



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 17/216 (7%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
           N+  S K  N +T + I+     + + +  + IH Q++   L  +  + T ++   S   
Sbjct: 288 NVSGSIK-CNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCG 346

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            ++ A   F     KN+  ++ +I G   + H Q  +  F  M R    PN +T+  V  
Sbjct: 347 RVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLA 406

Query: 138 SVASLSLLSLGRGLHCLI-----VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           + +   LL  GR  +  +     ++ GVE       H   M   LG+     + +    E
Sbjct: 407 ACSHAGLLDKGRYWYNAMKKRFGIEPGVE-------HYGCMVDLLGRAGCLDEAYGLIKE 459

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
                   +W  L++ C     + K VEL  +  K+
Sbjct: 460 MKVKPDAAIWGALLSACR----IHKNVELAEISAKR 491


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 208/697 (29%), Positives = 344/697 (49%), Gaps = 104/697 (14%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S  Q +Q+HAQ I     + +  +  +IS  +  K +  AL +F       +  +  +IR
Sbjct: 20  SKSQAKQLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIR 78

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
              + S F   ++ FV M      P+   +P V KS   +  L  G  +H  IV+ G++ 
Sbjct: 79  CFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDC 138

Query: 163 DAFVRVHLADMYVQL---GKTRGAFKVFDETPEKN--------KSESVLL---------- 201
           D +    L +MY +L   G       VFDE P++         K+E+ ++          
Sbjct: 139 DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRV 198

Query: 202 -----------WNVLINGCSKIGYLRKAV------------------------------- 219
                      +N +I G ++ G    A+                               
Sbjct: 199 FEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDV 258

Query: 220 ----ELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
               E+ G + +K + S V    SL+D + +   ++ +  +F ++  +  +SW +++ G+
Sbjct: 259 IKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
            QNG   +AL +F QM+ A V+       S + ACA +  L  G ++H Y+    FG   
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNI 378

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            I +ALVDMY+KCGNI+AA  +F      D ++WTA+I G A+HG   +A+  F++M   
Sbjct: 379 FIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQ 438

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G +P+   F+A+LTAC + G V  A  +F+SM   Y +   ++H+  V +LL R G+  +
Sbjct: 439 GVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEE 498

Query: 452 GY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
            Y                            + ++    K+  +  ++  +YVL+ N+YA+
Sbjct: 499 AYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYAS 558

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
            GRWK++A++R  M+++ ++K P  S+IE+    H F +G   H    +I+  L+ +M  
Sbjct: 559 NGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQ 618

Query: 542 AREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
             ++GY+  T  VLH++ EE K E L  HSE+LA+AFG+I T PGTTI++ K + IC DC
Sbjct: 619 MEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDC 678

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H  +K+ SKI++REI++RD +RFH+F  G CSC DYW
Sbjct: 679 HVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  327 bits (839), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 290/567 (51%), Gaps = 72/567 (12%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +V S   +S  R +H  + KS +  D F+   L   Y +LG    A K+FD+ P K+   
Sbjct: 48  AVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKD--- 104

Query: 198 SVLLWNVLINGCSKIGYLR---------------KAVELFGMMPKKN------------- 229
            ++ WN LI+G S+  ++                  V +  M+   N             
Sbjct: 105 -LVSWNSLISGFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFG 163

Query: 230 --------VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
                   V    SLI+ + + GDL  A  LFE +P+   VSW ++I     NG A + +
Sbjct: 164 IKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGI 223

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
             F +M   G+  ++ T+++ L AC  +G  +    +H  + C  FG K  I TAL+D Y
Sbjct: 224 DYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTY 283

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AK G + A+  VF E    D + WTAM+ G A HG   +AI+ F+ M   G EPD   F 
Sbjct: 284 AKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFT 343

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
            +L+AC +SG V    ++F+ M   Y IEP V H++ +V+LL R G  +  Y+  QN   
Sbjct: 344 HLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 462 K----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
           +                            L+ ++P  P +Y++LSN+Y+A   WKD A+V
Sbjct: 404 EPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKV 463

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R L++ R +K+ PG+S IE     H F  G   H   ++I+SKLE+++   R+ GY   T
Sbjct: 464 RALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKT 523

Query: 552 EWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           E+VL +++EE KE+ +  HSEKLA+AFGL+ +  G  + I K L ICGDCHS  K  S I
Sbjct: 524 EYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLI 583

Query: 611 SQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +R I++RD  RFH+F DG CSC DYW
Sbjct: 584 EKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 170/386 (44%), Gaps = 54/386 (13%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           ++S  S    R+IHA++    L+    I  QL++  +     + AL +FD    K+L  +
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSW 108

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LI G +   H  S  + +     +SV+PN +T   +S   A    L  G+ +H   +K
Sbjct: 109 NSLISGFSRCLHM-SLTAFYTMKFEMSVKPNEVT--ILSMISACNGALDAGKYIHGFGIK 165

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-----NGCSK- 211
            G   +  V   L +MY + G    A ++F+  P+ N     + WN +I     NGC++ 
Sbjct: 166 VGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPN----TVSWNSIIAAQVTNGCARE 221

Query: 212 -IGYLRK----------------------------AVELFGMM------PKKNVASWVSL 236
            I Y  K                            A  + G+M       K  +A+  +L
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIAT--AL 279

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +D + + G L  +  +F ++     V+WTAM+ G++ +G   +A+ +F  M + G+  + 
Sbjct: 280 LDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDH 339

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLV 353
            T    LSAC+  G +  G    N +S   +G++  +   + +VD+  +CG + +A  ++
Sbjct: 340 VTFTHLLSACSHSGLVNEGKSYFNVMS-EVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVI 398

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYE 379
                E +   W A++    +HG  E
Sbjct: 399 QNMPMEPNAGVWGALLGACRVHGNIE 424



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 127/252 (50%), Gaps = 7/252 (2%)

Query: 204 VLINGCSKIGYLRKA-VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           + +N C  I   R+    +F  +  ++      L+  + + G  + A +LF+ MP K +V
Sbjct: 47  IAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLV 106

Query: 263 SWTAMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           SW ++I+GFS+      +L  F+ M  +  V+ N+ T++S +SAC   GAL+AG  +H +
Sbjct: 107 SWNSLISGFSRC--LHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGF 162

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
                  L+  +  +L++MY K G++ +A  +F    + + ++W ++I     +G   + 
Sbjct: 163 GIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREG 222

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           I YF KM   G E D    LA+L AC + G  KLA +    M F       +   T +++
Sbjct: 223 IDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLM-FCTGFGAKITIATALLD 281

Query: 442 LLSRVGQDSQGY 453
             +++G+ S  Y
Sbjct: 282 TYAKLGRLSASY 293



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 122/317 (38%), Gaps = 21/317 (6%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQL-RQIHAQIILHNLFASSRITTQLISSAS 74
           T   + S KP+    E  I+S+I + N      + IH   I        ++   LI+   
Sbjct: 128 TMKFEMSVKPN----EVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANSLINMYG 183

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
               +  A  +F+     N   +N +I     N   +  I +F  M RL +  +  T   
Sbjct: 184 KSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILA 243

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + ++   L +  L   +H L+  +G      +   L D Y +LG+   ++ VF E    +
Sbjct: 244 LLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFAD 303

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAG 250
           +    + W  ++ G +  G  R+A++LF  M  K +     ++  L+      G + +  
Sbjct: 304 R----VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGK 359

Query: 251 ELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             F  M      E  V  ++ M++   + G    A  +   M    +  N     + L A
Sbjct: 360 SYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM---PMEPNAGVWGALLGA 416

Query: 306 CAKVGALEAGVRVHNYI 322
           C   G +E G  V  ++
Sbjct: 417 CRVHGNIELGKEVAEHL 433


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 176/463 (38%), Positives = 270/463 (58%), Gaps = 43/463 (9%)

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           I+GCS    +R+     G+  +  VAS  SLID + +   +  +  +F  + E+  +SW 
Sbjct: 322 IHGCS----IRQ-----GLDAEVYVAS--SLIDMYAKCTRVVDSYRVFTLLTERDGISWN 370

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           ++I G  QNG  ++ L  F QML A ++   ++  S + ACA +  L  G ++H YI+ N
Sbjct: 371 SIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRN 430

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     I ++LVDMYAKCGNI  A  +F   + +D+++WTAMI G A+HG    AI+ F
Sbjct: 431 GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELF 490

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           ++M   G EP+   F+A+LTAC ++G V  A  +F+SM  D+ I P V+H+  V +LL R
Sbjct: 491 EQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGR 550

Query: 446 VGQDSQGYQ----------------------------NSQNSFTKLLQLKPKHPSSYVLL 477
            G+  + Y                              ++    ++L++ PK+  +Y+LL
Sbjct: 551 AGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYILL 610

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           +NIY+A  RWK+ A+ R  ++R  I+K P  S+IEV   V+ F AG   H   ++I   +
Sbjct: 611 ANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREAM 670

Query: 536 EDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKL 594
           E +M    ++GY+P T  V H+++EE+++ L C HSE+LA+ FG+I T  GTTI++ K L
Sbjct: 671 EVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNL 730

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            +C DCH+  K+ SKI  REIV+RD +RFH+FK+GTCSC DYW
Sbjct: 731 RVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 196/411 (47%), Gaps = 39/411 (9%)

Query: 30  TETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE  + SL+ +  S K   Q +Q+HAQ++     +   ++  L   + ++   D +L +F
Sbjct: 7   TEALVNSLLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHD-SLRLF 65

Query: 87  D--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +  HF P     +  +IR    +      +  F+ ML   + P+   +P V K+ A L  
Sbjct: 66  NTLHFPPA--LAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMD 123

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL------GKTR-GAFKVFDETPEKNKS- 196
           L+LG  LH  I++ G+++D +    L +MY +L      G+ R GA +V DE  E+ +S 
Sbjct: 124 LNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSV 183

Query: 197 --ESVLLWNV--------LIN---GCSKIGYLRKAVEL-------FGMMPKKNVASWVSL 236
              SVL+ N           N    C    +  + +E+       +  M   N+   +  
Sbjct: 184 RTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEACNLGQQIKD 243

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I   M    ++K   +FE MPEK +VSW  +I G ++NG   + L M  +M  A ++ + 
Sbjct: 244 ISHSMSVDSVRK---IFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDS 300

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           FT+ S L   A+   +  G  +H          +  + ++L+DMYAKC  +  +  VF  
Sbjct: 301 FTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTL 360

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             E+D ++W ++I G   +G +++ +++F++M+ +  +P    F +I+ AC
Sbjct: 361 LTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPAC 411



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 123/266 (46%), Gaps = 14/266 (5%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP ++ T + ++ LI  +    + ++IH   I   L A   + + LI   +    +  + 
Sbjct: 297 KP-DSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSY 355

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +F   T ++   +N +I G  +N  F   +  F  ML   ++P   ++  +  + A L+
Sbjct: 356 RVFTLLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLT 415

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG+ LH  I ++G + + F+   L DMY + G  R A ++FD    + +   ++ W 
Sbjct: 416 TLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFD----RMRLRDMVSWT 471

Query: 204 VLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-- 257
            +I GC+  G+   A+ELF  M     + N  ++++++      G + +A + F  M   
Sbjct: 472 AMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLD 531

Query: 258 ---EKGVVSWTAMINGFSQNGEAEKA 280
                GV  + A+ +   + G  E+A
Sbjct: 532 FGIAPGVEHYAAVSDLLGRAGRLEEA 557


>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
 gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
          Length = 538

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 185/530 (34%), Positives = 276/530 (52%), Gaps = 58/530 (10%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD     N  I+N + RG ++N   +  I  F  M  L V PN  T+P + KS
Sbjct: 1   MENAHKVFDQIPEPNASIWNAMFRGYSQNESHKDVIVLFRQMKGLDVMPNCFTFPVILKS 60

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN---- 194
              ++ L  G  +HC ++KSG   + FV   L DMY   G    A++VF E  E+N    
Sbjct: 61  CVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVFGEMIERNVIAW 120

Query: 195 -----------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
                                      ++LWN +I+G  +   + +A ELF  MP K+V 
Sbjct: 121 TAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDVIRARELFDKMPNKDVM 180

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DA 290
           SW ++++G+   GD+     LFE+MPE+ V SW A+I G+++NG   + L+ F +ML D 
Sbjct: 181 SWNTVLNGYASNGDVMACERLFEEMPERNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDG 240

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            V  ND T+V+ LSACA++GAL+ G  VH Y   + +     +  AL+DMYAKCG +E A
Sbjct: 241 TVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETA 300

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF     KDL++W  +I GLA+HG    A+  F  M  +G  PDG  F+ IL AC + 
Sbjct: 301 LDVFKSMDNKDLISWNTIIGGLAVHGHGADALNLFSHMKIAGENPDGITFIGILCACTHM 360

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------ 452
           G V+   ++F SM  DY I P ++H+  +V+LL R G  +                    
Sbjct: 361 GLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKMPIEADAVIWAA 420

Query: 453 -------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                  Y+N   ++ +  KL++ +PK+P++YV+LSNIY   GRWKDVAR++  M+    
Sbjct: 421 LLGACRVYKNVELAELALEKLIEFEPKNPANYVMLSNIYGDFGRWKDVARLKVAMRDTGF 480

Query: 503 KKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPG 550
           KK PG S IEVN ++  F +    H   ++I+  L  +    R  GY+PG
Sbjct: 481 KKLPGCSLIEVNDYLVEFYSLDERHPEKEQIYGTLRTLTKLLRSSGYVPG 530


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  327 bits (839), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 207/660 (31%), Positives = 334/660 (50%), Gaps = 76/660 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H  ++   + +++ +   LI        +  A  +F++   +    +  +I    ++
Sbjct: 221 RSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQS 280

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFV 166
             FQ  ++ F  M    + PN++T   V  + A L  +  GR +H  +++  ++ +  F+
Sbjct: 281 GCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFL 340

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
              L ++Y   G  R   KVF+   EK    ++L WN LI+  ++ G   +A+ LF    
Sbjct: 341 GPALMELYADTGNLRDCHKVFETIKEK----TILSWNTLISIFTRNGQPEEALLLFVQMQ 396

Query: 223 --GMMPKK------------------------------NVASWV--SLIDGFMRKGDLKK 248
             G+MP                                N   +V  +LID + + G +  
Sbjct: 397 TQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHS 456

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++FE++ EK +V+W +MI GFSQNG + +A+ +F QM    V+ +  T +S + AC+ 
Sbjct: 457 ANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSH 516

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +G LE G  VH+ +          + TAL DMY+KCG ++ A  VF    E+ +++W+ M
Sbjct: 517 LGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVM 576

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G  +HG+    I  F +M+ SG +P+   F+ IL+AC ++G V+    +F+SM  ++ 
Sbjct: 577 IAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFG 635

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQ---------NSQ------------------NSFT 461
           +EP   H   +V+LLSR G  +  YQ         NS                    S  
Sbjct: 636 VEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIE 695

Query: 462 K-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
           K LL +       Y LLSNIYA EG W    +VR++M+ + ++K PG+S IE++  ++RF
Sbjct: 696 KNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRF 755

Query: 521 EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE-WVLHNIKEEKEEALGCHSEKLALAF 577
             G   H   K+I+  LE+  +    Q Y    +  ++   K  KE  +  HSEKLA+AF
Sbjct: 756 GPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAF 815

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G+I T PGTT++I K L +C DCHS  K ASKI+ REI++RD  RFH F++G+CSC DYW
Sbjct: 816 GIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 203/410 (49%), Gaps = 53/410 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++H ++I     + + + T L+        +D A   FD    +++  ++ ++    +N 
Sbjct: 121 KVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNG 180

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
                +  F  M+  +V P+ +T   V+++ + L  L LGR +H  +V+  +E +A +  
Sbjct: 181 QASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNN 240

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK- 227
            L  MY +LG    A ++F+  P +  +     W  +I+  ++ G  ++A+ +F  M + 
Sbjct: 241 SLIVMYGKLGDLYSAERLFENVPCRMTAP----WTPMISCYNQSGCFQEALNVFAKMQEF 296

Query: 228 -------------------------KNVASWV--------------SLIDGFMRKGDLKK 248
                                    ++V  +V              +L++ +   G+L+ 
Sbjct: 297 KMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRD 356

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
             ++FE + EK ++SW  +I+ F++NG+ E+AL +F QM   G+  + +++ S+LSAC  
Sbjct: 357 CHKVFETIKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGT 416

Query: 309 VGALEAGVRVHNYI----SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           +   + G ++H YI    + NDF     +  AL+DMYAKCG + +A+ +F + KEK L+T
Sbjct: 417 ISFSQLGAQIHGYIIKTGNFNDF-----VQNALIDMYAKCGFVHSANKMFEKIKEKSLVT 471

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
           W +MI G + +G   +AI  F +M  +  + D   FL+++ AC + G ++
Sbjct: 472 WNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLE 521



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 188/400 (47%), Gaps = 39/400 (9%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           + L     ++  L Q+HA + +  L      +T+LI S +     + +  +FD F   + 
Sbjct: 5   MPLFRRCATSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDS 64

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
            ++ VLI+       F+  +S +  M+ +   + +   +P V K+ +    LS+G  +H 
Sbjct: 65  FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHG 124

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSE 197
            ++K G E DA V   L  MY ++     A K FD  P ++                 SE
Sbjct: 125 RVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASE 184

Query: 198 SVLLWNVLIN---------------GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM- 241
            + +++ +I+                CS++G LR    + G + ++ + S  SL +  + 
Sbjct: 185 GLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIV 244

Query: 242 ---RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
              + GDL  A  LFE +P +    WT MI+ ++Q+G  ++AL +F +M +  +  N  T
Sbjct: 245 MYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVT 304

Query: 299 VVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           +V  L ACA++G ++ G  VH ++     D  L   +G AL+++YA  GN+     VF  
Sbjct: 305 MVGVLCACARLGRVKEGRSVHGFVIRRAMDPELD-FLGPALMELYADTGNLRDCHKVFET 363

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
            KEK +L+W  +I     +G+ E+A+  F +M   G  PD
Sbjct: 364 IKEKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPD 403



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 141/325 (43%), Gaps = 48/325 (14%)

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           L  P   +   S +L  L    H  +  +G+         L + Y Q+G    + +VFD 
Sbjct: 3   LYMPLFRRCATSTTLTQL----HAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT 58

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---PKKNVASWV--SLIDGFMRKG 244
            P+ +      +W VLI      G+  +AV L+  M    +  ++++V  S++      G
Sbjct: 59  FPKPDS----FMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFG 114

Query: 245 DLKKAGEL-----------------------------------FEQMPEKGVVSWTAMIN 269
           DL   G++                                   F+ MP + VV+W++++ 
Sbjct: 115 DLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVL 174

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            F QNG+A + L MF QM+   V  +  T++S   AC+++G+L  G  VH Y+   +   
Sbjct: 175 NFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIES 234

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
             ++  +L+ MY K G++ +A  +F     +    WT MI      G +++A+  F KM 
Sbjct: 235 NASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQ 294

Query: 390 YSGTEPDGTVFLAILTACWYSGQVK 414
               EP+    + +L AC   G+VK
Sbjct: 295 EFKMEPNQVTMVGVLCACARLGRVK 319



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/182 (22%), Positives = 87/182 (47%), Gaps = 1/182 (0%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRA 294
           LI+ + + G  + +  +F+  P+     W  +I  +   G  E+A++++ +M+     + 
Sbjct: 39  LIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQI 98

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           ++F   S L AC+  G L  G +VH  +    F     + T+L+ MY +   ++ A   F
Sbjct: 99  SNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGFESDAVVETSLLCMYGEMSCLDDACKAF 158

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                +D++ W++++     +G+  + +  F +M+    EPD    L++  AC   G ++
Sbjct: 159 DTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLR 218

Query: 415 LA 416
           L 
Sbjct: 219 LG 220


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 219/655 (33%), Positives = 323/655 (49%), Gaps = 102/655 (15%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS------ASLHKSIDYALSIF--- 86
           +L+    +   + Q HA++ +  L A++R   QL+++      A+   S  Y L +F   
Sbjct: 31  ALLPPRPALYHVLQAHARLAVLGL-ATARALPQLLAALPRLTLAAADVSHSYPLLLFRCS 89

Query: 87  --------DHFT-----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
                   +H       P  L +F  L R    N H       F F+L  S+  +  T P
Sbjct: 90  NCTSAFASNHLLRVLPHPLPLRLFPRLPR---RNPH------SFTFLLA-SLSNHLDTEP 139

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
             + S+AS  +   G  +H L VK+G   D +VR      Y   G      KVFDE P  
Sbjct: 140 AAAGSIASRFM---GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIV 196

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
                                             ++V +W +++ G++R G +  A E+F
Sbjct: 197 ----------------------------------RDVVTWNAVLAGYVRAGMVGVAREVF 222

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           + MP +  VSW+ +I G+ + GE E AL +F  M+  GV+AN+  +V+ALSA A++G LE
Sbjct: 223 DGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLE 282

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G  VH  +      +   +G AL+DMY+KCG++ AA  VF     +D+  W +MI GLA
Sbjct: 283 QGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLA 342

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            HG    A+Q F+K +  G  P    F+ +L AC  +G V     +F  M   Y IE  +
Sbjct: 343 THGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEM 402

Query: 434 KHHTVVVNLLSRVG--QDS----QGYQNSQNSF----------------------TKLLQ 465
           +H+  +V+LLSR G  Q++    +G +   +                         KL++
Sbjct: 403 EHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE 462

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L P H   YVLL++IYA   +W +V +VR LM  R   K  GWS +E +G VH+F  G  
Sbjct: 463 LDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDM 522

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQT 582
            HK +  I++ L  I     E GY+P    VLH+I  EEK  A+  HSE+LA+A+G I  
Sbjct: 523 NHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVV 582

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             G+ I+IVK L++CGDCH   K  +K+  REIV+RD +RFH+ KDG CSC DYW
Sbjct: 583 EAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 204/634 (32%), Positives = 326/634 (51%), Gaps = 85/634 (13%)

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           ++F+ +  K ++  +N +I  LA +      +  F  M +LS+ P R ++P   K+ +SL
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G+  H      G + D FV   L  MY   GK   A KVFDE P++N    ++ W
Sbjct: 90  LDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN----IVSW 145

Query: 203 NVLINGCSKIGYLRKAVELF-------------------GMMPKKNVASWV--------- 234
             +I G    G    AV LF                   GM+   +  S V         
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESI 205

Query: 235 -----------------SLIDGFMRKGD--LKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                            +L+D + + G+  +  A ++F+Q+ +K  VS+ ++++ ++Q+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 276 EAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            + +A  +F +++ +  V  N  T+ + L A +  GAL  G  +H+ +          +G
Sbjct: 266 MSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           T+++DMY KCG +E A L F   K K++ +WTAMI G  +HG   +A++ F  M+ SG  
Sbjct: 326 TSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   F+++L AC ++G   +  ++F++M+  + +EP ++H+  +V+LL R G   + Y 
Sbjct: 386 PNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 455 NSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
             Q                             S  +L +L P +   Y+LLS+IYA  GR
Sbjct: 446 LIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGR 505

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGARE 544
           WKDV RVR  M+ R + K PG+S +E+NG VH F  G   H   ++I+  L ++     E
Sbjct: 506 WKDVERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLE 565

Query: 545 QGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY+  T  V H++ +EEKE  L  HSEKLA+AFG++ T PG+T+ +VK L +C DCH++
Sbjct: 566 AGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNV 625

Query: 604 MKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K  SKI  RE V+RD  RFH+FKDG CSC DYW
Sbjct: 626 IKLISKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 42.7 bits (99), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT + ++  +  S + +  + IH Q+I   L     + T +I        ++ A   F
Sbjct: 286 NCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAF 345

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KN+  +  +I G   + H    +  F  M+   VRPN +T+  V  + +   L  
Sbjct: 346 DRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHD 405

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           +G    + +  + GVE       H   M   LG+     K +D   +       ++W+ L
Sbjct: 406 VGWHWFNAMKGRFGVEPGL---EHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSL 462

Query: 206 INGCSKIGYLRKAVEL 221
           +  C     + K VEL
Sbjct: 463 LAACR----IHKNVEL 474


>gi|297810061|ref|XP_002872914.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297318751|gb|EFH49173.1| hypothetical protein ARALYDRAFT_327675 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1305

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 201/655 (30%), Positives = 342/655 (52%), Gaps = 53/655 (8%)

Query: 27   NNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
            +N++  + + +++S N   +  R++   ++  NL + + I    +SS +    +D A+ +
Sbjct: 659  SNVSMCNSLIVMYSRNGKLESSRKVFNSMVDRNLSSWNSI----VSSYTRLGYVDDAMGL 714

Query: 86   FDHFTPKNLH----IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
             D      L      +N L+ G A  +  +  I+    +    ++PN  +   + ++V  
Sbjct: 715  LDEMETCGLKPDIVTWNSLLSGYASKALSRDAIAVLKRIQIAGLKPNTSSISSLLQAVYE 774

Query: 142  LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              L+ LG+ +H  ++++ + YD +V   L DMY++ G    A  VFD   EKN    ++ 
Sbjct: 775  PGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDEKN----IVA 830

Query: 202  WNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKA----GELF 253
            WN LI+G S  G L++A  L   M K+    N  +W SL+ G+   G  +KA    G++ 
Sbjct: 831  WNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLVSGYATWGKTEKALAVVGKMK 890

Query: 254  EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
            +   E  VVSWTA+++G S+NG     L +F +M + GV  N  T+ S L     +  L 
Sbjct: 891  KNGVEPNVVSWTAILSGCSKNGNFGNGLKIFLKMQEEGVSPNSATISSLLRILGCLSLLY 950

Query: 314  AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            +G  VH++   N+      + TALVDMYAK G++++A+ +F   K K L +W  MI G A
Sbjct: 951  SGKEVHSFCLKNNLTRDAHVATALVDMYAKSGDLQSAAEIFWGIKNKPLASWNCMIMGYA 1010

Query: 374  IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            +  R E+ I  F  M+ +G EPD   F ++L+ C  SG V+    +FD MR  Y + P++
Sbjct: 1011 MFRRGEEGIAVFNAMLEAGIEPDAITFTSVLSVCKNSGLVREGWKYFDLMRSHYGVIPTI 1070

Query: 434  KHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQ 465
            +H + +V LL R G   + +                            + ++ ++ +L  
Sbjct: 1071 EHCSCMVELLGRSGYLDEAWDFIRTMPLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQV 1130

Query: 466  LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG- 524
            L+P + ++Y+++ N+Y+   RW DV R+R  M    ++    WS+I+++  VH F A G 
Sbjct: 1131 LEPHNSANYMMMINLYSNLNRWGDVERIRNSMSNNRVRVQDLWSWIQIDQTVHIFYAEGK 1190

Query: 525  -HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQT 582
             H    EI+ +L  +++  ++ GYMP T  +  N+ E EKE+ L  H+EKLA+ +GLI+ 
Sbjct: 1191 AHPDEGEIYFELYKLVSEMKKSGYMPDTRCIHQNVSESEKEKLLMGHTEKLAMTYGLIKK 1250

Query: 583  TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
                 I++VK   +C DCH++ KY S +  REIVL++  R H+F+DG CSC + W
Sbjct: 1251 KGIAPIRVVKNTNLCSDCHTVAKYISVLRNREIVLQEGARVHHFRDGKCSCNNSW 1305



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/410 (21%), Positives = 181/410 (44%), Gaps = 41/410 (10%)

Query: 50  IHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           IH  +I   L  S +R+ + L+       S+D A  IFD    ++   +N ++    ++ 
Sbjct: 546 IHGGLIKRGLDNSDTRVVSALMGFYGRCVSLDLANKIFDEMPKRDDLAWNEIVMVNLQSG 605

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
           +++  +  F  M     +    T   + +  ++    + GR +H  +++ G E +  +  
Sbjct: 606 NWEKAVKLFRVMRFSGAKAYDSTMVKLLQVCSNKEGFAQGRQIHGYVLRLGFESNVSMCN 665

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
            L  MY + GK   + KVF+   ++N S     WN +++  +++GY+  A+ L   M   
Sbjct: 666 SLIVMYSRNGKLESSRKVFNSMVDRNLSS----WNSIVSSYTRLGYVDDAMGLLDEMETC 721

Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
             K ++ +W SL+ G+  K                                 +  A+A+ 
Sbjct: 722 GLKPDIVTWNSLLSGYASK-------------------------------ALSRDAIAVL 750

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            ++  AG++ N  ++ S L A  + G ++ G  +H Y+  N       + T L+DMY K 
Sbjct: 751 KRIQIAGLKPNTSSISSLLQAVYEPGLVKLGKAIHGYVIRNQLWYDVYVETTLIDMYIKT 810

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +  A +VF    EK+++ W ++I GL+  G  ++A     +M   G + +   + +++
Sbjct: 811 GYLPYARMVFDMMDEKNIVAWNSLISGLSYTGLLKEAEALISRMEKEGIKSNAVTWNSLV 870

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           +     G+ + AL     M+ +  +EP+V   T +++  S+ G    G +
Sbjct: 871 SGYATWGKTEKALAVVGKMKKN-GVEPNVVSWTAILSGCSKNGNFGNGLK 919



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 6/176 (3%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVRA 294
           LI  ++  G+   A  +F     +  VSW   +      G E  K L  F ++ + GV  
Sbjct: 463 LITRYLEFGEFGYASAVFFLGFPRNQVSWRDFLEKAEDFGVEKYKVLEEFVRLQNKGVNF 522

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCGNIEAAS 351
           ++  +      CA +     G  +H  +     GL  +   + +AL+  Y +C +++ A+
Sbjct: 523 DEVVLAMVFRICAVLMYRFLGFTIHGGLIKR--GLDNSDTRVVSALMGFYGRCVSLDLAN 580

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +F E  ++D L W  ++      G +E+A++ F+ M +SG +   +  + +L  C
Sbjct: 581 KIFDEMPKRDDLAWNEIVMVNLQSGNWEKAVKLFRVMRFSGAKAYDSTMVKLLQVC 636


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 196/567 (34%), Positives = 291/567 (51%), Gaps = 72/567 (12%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +V S   +S  R +H  + KS +  D F+   L   Y +LG    A K+FD+ P K+   
Sbjct: 48  AVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKD--- 104

Query: 198 SVLLWNVLINGCSKIGYLR----------------------------------KAVELFG 223
            ++ WN LI+G S+  ++                                   K +  FG
Sbjct: 105 -LVSWNSLISGFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACSGALDAGKYIHGFG 163

Query: 224 MMPKKNVASWV--SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           +     +   V  SLI+ + + GDL  A  LFE +P+   VSW ++I     NG A + +
Sbjct: 164 IKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGI 223

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
             F +M   G+  ++ T+++ L AC  +G  +    +H  + C  FG K  I TAL+D Y
Sbjct: 224 DYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTY 283

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AK G + A+  VF E    D + WTAM+ G A HG   +AI+ F+ M   G EPD   F 
Sbjct: 284 AKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFT 343

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
            +L+AC +SG V    ++F+ M   Y IEP V H++ +V+LL R G  +  Y+  QN   
Sbjct: 344 HLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPM 403

Query: 462 K----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
           +                            L+ ++P  P +Y++LSN+Y+A   WKD A+V
Sbjct: 404 EPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKV 463

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R L++ R +K+ PG+S IE     H F  G   H   ++I+SKLE+++   R+ GY   T
Sbjct: 464 RALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKT 523

Query: 552 EWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           E+VL +++EE KE+ +  HSEKLA+AFGL+ +  G  + I K L ICGDCHS  K  S I
Sbjct: 524 EYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLI 583

Query: 611 SQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +R I++RD  RFH+F DG CSC DYW
Sbjct: 584 EKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 170/386 (44%), Gaps = 54/386 (13%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           ++S  S    R+IHA++    L+    I  QL++  +     + AL +FD    K+L  +
Sbjct: 49  VNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSW 108

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LI G +   H  S  + +     +SV+PN +T   +S   A    L  G+ +H   +K
Sbjct: 109 NSLISGFSRCLHM-SLTAFYTMKFEMSVKPNEVT--ILSMISACSGALDAGKYIHGFGIK 165

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-----NGCSK- 211
            G   +  V   L +MY + G    A ++F+  P+ N     + WN +I     NGC++ 
Sbjct: 166 VGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPN----TVSWNSIIAAQVTNGCARE 221

Query: 212 -IGYLRK----------------------------AVELFGMM------PKKNVASWVSL 236
            I Y  K                            A  + G+M       K  +A+  +L
Sbjct: 222 GIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIAT--AL 279

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +D + + G L  +  +F ++     V+WTAM+ G++ +G   +A+ +F  M + G+  + 
Sbjct: 280 LDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDH 339

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLV 353
            T    LSAC+  G +  G    N +S   +G++  +   + +VD+  +CG + +A  ++
Sbjct: 340 VTFTHLLSACSHSGLVNEGKSYFNVMS-EVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVI 398

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYE 379
                E +   W A++    +HG  E
Sbjct: 399 QNMPMEPNAGVWGALLGACRVHGNIE 424



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 123/317 (38%), Gaps = 21/317 (6%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHS-SNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           T   + S KP+    E  I+S+I + S +    + IH   I        ++   LI+   
Sbjct: 128 TMKFEMSVKPN----EVTILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANSLINMYG 183

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
               +  A  +F+     N   +N +I     N   +  I +F  M RL +  +  T   
Sbjct: 184 KSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILA 243

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + ++   L +  L   +H L+  +G      +   L D Y +LG+   ++ VF E    +
Sbjct: 244 LLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFAD 303

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAG 250
           +    + W  ++ G +  G  R+A++LF  M  K +     ++  L+      G + +  
Sbjct: 304 R----VAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGK 359

Query: 251 ELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             F  M      E  V  ++ M++   + G    A  +   M    +  N     + L A
Sbjct: 360 SYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNM---PMEPNAGVWGALLGA 416

Query: 306 CAKVGALEAGVRVHNYI 322
           C   G +E G  V  ++
Sbjct: 417 CRVHGNIELGKEVAEHL 433


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  327 bits (837), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 197/656 (30%), Positives = 332/656 (50%), Gaps = 74/656 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K   KP N+ T  ++IS   +     + R+IHA+I+ +   +   + T LI+      S
Sbjct: 199 MKCDMKP-NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVATALINMYGKCGS 257

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
              A  +FD    +++  +NV+I    +N  F   +  +  +     +  + T+  +  +
Sbjct: 258 SHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFKRTKATFVSILGA 317

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            +S+  L+ GR +H  I++ G++ +  V   L +MY                        
Sbjct: 318 CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY------------------------ 353

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG---DLKKAGELFEQ 255
                      +K G L +A ++F  M  ++  +W +LI  +   G   D +KA ++F++
Sbjct: 354 -----------AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEA 314
           +  +  + W AMI  + QNG A  A+ +F +M  A G++ +  T ++ L ACA +G L  
Sbjct: 403 LGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
              +H  IS ++      +   L++MYA+CG++E A  +F   KEK +++WTAM+   + 
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           +GRY +A+  F++M   G +PD   + +IL  C + G ++    +F  M   + + P+  
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD 582

Query: 435 HHTVVVNLLSRVGQ--DSQGYQNS--------------------------QNSFTKLLQL 466
           H   +V+LL R G+  D++    S                          + +  ++ +L
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-- 524
            P   + Y+ +SNIYAA G W+ VA VR  M+ R +KK PG S+IEV+G +H F +GG  
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTT 583
           H    EI  +L  +    R  GY+P T+ VLH++ E EKE  L  HSEK+A+AFGL+ + 
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 584 -PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF-KDGTCSCRDYW 636
             G  I++VK L +C DCH+  K+ ++I+ R+I+LRD  RFH F  DG CSC DYW
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 128/557 (22%), Positives = 235/557 (42%), Gaps = 90/557 (16%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +  +N+T   ++    S     + R +H +I        + +   LIS      S+  A 
Sbjct: 3   RQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 84  SIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           S+F+   +  +N+  +N +I   A+N H    +  +  M    +  + +T+  V   + +
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSV---LGA 119

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            S L+ GR +H  +  SG++    +   L  MY + G    A ++F     ++++     
Sbjct: 120 CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS---- 175

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFM--------RK------- 243
           WN +I   S+ G    A+ +F  M    K N  +++++I GF         RK       
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMKCDMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 244 --------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                               G   +A E+F++M ++ +VSW  MI  + QNG+  +AL +
Sbjct: 236 NGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALEL 295

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           + ++   G +    T VS L AC+ V AL  G  VH++I       + A+ TALV+MYAK
Sbjct: 296 YQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAK 355

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG--------------------------- 376
           CG++E A  VF   K +D + W+ +I   A +G                           
Sbjct: 356 CGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMI 415

Query: 377 -RYEQ------AIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
             Y Q      A++ F++M   +G +PD   F+A+L AC   G++   +    +   +  
Sbjct: 416 TTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLS-EVKALHAQISESE 474

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
           +E +V     ++N+ +R G      + ++  F      K K   S+  +   ++  GR+ 
Sbjct: 475 LESNVVVTNTLINMYARCGS----LEEAERLFA---AAKEKTVVSWTAMVAAFSQYGRYA 527

Query: 489 DVARVRTLMQRRSIKKD 505
           +   +   M    +K D
Sbjct: 528 EALDLFQEMDLEGVKPD 544


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 190/592 (32%), Positives = 319/592 (53%), Gaps = 67/592 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
           +D A++ F+    +++  +N +I G  +  +    +  F  MLR S + P+R T   V  
Sbjct: 228 MDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLS 287

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A+L  L +G  +H  IV +G +    V   L  MY + G    A ++ ++   K+   
Sbjct: 288 ACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDL-- 345

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                                           +  + +L+DG+++ GD+ +A  +F+ + 
Sbjct: 346 -------------------------------KIEGFTALLDGYIKLGDMNEAKNIFDSLK 374

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++ VV+WTAMI G+ Q+G   +A+ +F  M+    R N +T+ + LS  + + +L  G +
Sbjct: 375 DRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQ 434

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
           +H     +      ++  AL+ MYAK G+I +AS  F   + E+D ++WT+MI  LA HG
Sbjct: 435 IHGSAVKSGEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHG 494

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             E+A++ F+ M+  G  PD   ++ + +AC ++G V     +FD M+    I P++ H+
Sbjct: 495 HAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHY 554

Query: 437 TVVVNLLSRVG--QDSQG-----------------------YQN---SQNSFTKLLQLKP 468
             +V+L  R G  Q++Q                        Y+N    + +  +LL L+P
Sbjct: 555 ACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEP 614

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHK 526
           ++  +Y  L+N+Y+A G+W++ A++R  M+   +KK+ G+S+IEV   VH F  E G H 
Sbjct: 615 ENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHP 674

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPG 585
              EI+  ++ I    ++ GY+P T  VLH+++EE KE+ L  HSEKLA+AFGLI T   
Sbjct: 675 QKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDK 734

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           TT++I+K L +C DCH+ +K+ SK+  REI++RD TRFH+FKDG CSCRDYW
Sbjct: 735 TTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 177/347 (51%), Gaps = 26/347 (7%)

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           SV L N L+N  SK GY   A +LF  MP +   SW +++  + ++GD+  + E F+++P
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLP 107

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++  VSWT MI G+   G+  KA+ +  +M+  G+  + FT+ + L++ A    LE G +
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKK 167

Query: 318 VHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           VH++I     GL+G  ++  +L++MYAKCG+   A +VF     KD+ +W AMI   A+H
Sbjct: 168 VHSFIV--KLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMI---ALH 222

Query: 376 ---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
              G+ + A+  F++M     E D   + ++++     G    AL+ F  M  D  + P 
Sbjct: 223 MQVGQMDLAMAQFEQM----AERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPD 278

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                 V++  + + +   G Q   +  T    +      S ++L+ + +   R   V  
Sbjct: 279 RFTLASVLSACANLEKLCIGEQIHSHIVTTGFDI------SGIVLNALISMYSRCGGVET 332

Query: 493 VRTLMQRRSIK--KDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLED 537
            R L+++R  K  K  G++ + ++G++   + G    AK I   L+D
Sbjct: 333 ARRLIEQRGTKDLKIEGFTAL-LDGYI---KLGDMNEAKNIFDSLKD 375



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 172/433 (39%), Gaps = 100/433 (23%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS-----LHK--------------- 77
           ++ SN     + +H ++I   L  S  +   L++  S     LH                
Sbjct: 24  VNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSW 83

Query: 78  -----------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
                       +D +   FD    ++   +  +I G      +   I     M+R  + 
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIE 143

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P++ T   V  SVA+   L  G+ +H  IVK G+  +  V   L +MY + G    A  V
Sbjct: 144 PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVV 203

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           FD    K+ S     WN +I    ++G +  A+  F  M ++++ +W S+I G       
Sbjct: 204 FDRMVVKDISS----WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISG------- 252

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSA 305
                                   ++Q G   +AL MF +ML D+ +  + FT+ S LSA
Sbjct: 253 ------------------------YNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSA 288

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL------------- 352
           CA +  L  G ++H++I    F + G +  AL+ MY++CG +E A               
Sbjct: 289 CANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 353 --------------------VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
                               +F   K++D++ WTAMI G   HG Y +AI  F+ M+   
Sbjct: 349 GFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEE 408

Query: 393 TEPDGTVFLAILT 405
             P+     A+L+
Sbjct: 409 QRPNSYTLAAMLS 421



 Score = 42.7 bits (99), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 9/248 (3%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +    +P N+ T   ++S+  S  S    +QIH   +      S  ++  LI+  +   S
Sbjct: 405 VGEEQRP-NSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGS 463

Query: 79  IDYALSIFDHF-TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           I  A   FD     ++   +  +I  LA++ H +  +  F  ML   +RP+ +TY  V  
Sbjct: 464 ITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFS 523

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +     L++ GR    ++    V+       H A M    G+  G  +   E  EK   E
Sbjct: 524 ACTHAGLVNQGRQYFDMM--KDVDKIIPTLSHYACMVDLFGRA-GLLQEAQEFIEKMPIE 580

Query: 198 -SVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
             V+ W  L++ C     I   + A E   ++  +N  ++ +L + +   G  ++A ++ 
Sbjct: 581 PDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIR 640

Query: 254 EQMPEKGV 261
           + M +  V
Sbjct: 641 KSMKDGRV 648


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 198/617 (32%), Positives = 325/617 (52%), Gaps = 76/617 (12%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +NL  +  +I GL++NS F   I  F  M      P +  +    ++ ASL  + +G+ +
Sbjct: 4   RNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 63

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HCL +K G+  + FV  +L DMY + G    A KVF+E P K++    + W  +I+G SK
Sbjct: 64  HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE----VSWTAMIDGYSK 119

Query: 212 IGYLRKAVELFGMMPKKNV---------------------------ASWV---------- 234
           IG   +A+  F  M  + V                           +S V          
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFV 179

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
             +L D + + GD++ A  +F    E + VVS+T +I+G+ +  + EK L++F ++   G
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           +  N+FT  S + ACA   ALE G ++H  +   +F     + + LVDMY KCG +E A 
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
             F E  +   + W +++     HG  + AI+ F++M+  G +P+   F+++LT C ++G
Sbjct: 300 QAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG 359

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN----SQNSF----- 460
            V+  L++F SM   Y + P  +H++ V++LL R G  ++++ + N      N+F     
Sbjct: 360 LVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSF 419

Query: 461 -----------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                             KL++L+PK+  + VLLSNIYA E +W+DV  VR  M+  ++K
Sbjct: 420 LGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVK 479

Query: 504 KDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K PG+S+++V    H F  E   H     I+ KL+ ++   +  GY+P T+ V  ++ + 
Sbjct: 480 KLPGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDS 539

Query: 562 -KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
            KE+ L  HSE++A+AF LI    G  I + K L +C DCHS +K+ SK++ R+I++RD 
Sbjct: 540 MKEKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDN 599

Query: 620 TRFHYFKDGTCSCRDYW 636
           +RFH+F DG+CSC DYW
Sbjct: 600 SRFHHFTDGSCSCGDYW 616



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/152 (39%), Positives = 86/152 (56%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MP++ +VSWTAMI+G SQN +  +A+  F  M   G     F   SA+ ACA +G++E G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H        G +  +G+ L DMY+KCG +  A  VF E   KD ++WTAMI G +  
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           G +E+A+  FKKM+      D  V  + L AC
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGAC 152



 Score = 43.1 bits (100), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 54/271 (19%), Positives = 107/271 (39%), Gaps = 38/271 (14%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + +I    +  + +Q  Q+HAQ++  N      +++ L+        ++ A+  F
Sbjct: 243 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 302

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D         +N L+    ++   +  I  F  M+   V+PN +T+         +SLL+
Sbjct: 303 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITF---------ISLLT 353

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
                H  +V+ G++Y           +  + KT G        P +        ++ +I
Sbjct: 354 GCS--HAGLVEEGLDY-----------FYSMDKTYGV------VPGEEH------YSCVI 388

Query: 207 NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDL---KKAGELFEQMPEKGVV 262
           +   + G L++A E    MP + N   W S +      GD    K A E   ++  K   
Sbjct: 389 DLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSG 448

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           +   + N ++   + E   ++  +M D  V+
Sbjct: 449 ALVLLSNIYANERQWEDVRSVRMRMRDGNVK 479



 Score = 41.2 bits (95), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 34/58 (58%)

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           +++L++WTAMI GL+ + ++ +AI+ F  M   G  P    F + + AC   G +++ 
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 166/434 (38%), Positives = 260/434 (59%), Gaps = 32/434 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + + G    A ++FE+M +K V+SWT+++ G   NG  E+AL +F +M   G+  
Sbjct: 7   ALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHP 66

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +   + + LSACA++  LE G +VH     +  G   ++  +LV MYAKCG IE A+ VF
Sbjct: 67  DQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVF 126

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
              + +D++TWTA+I G A +GR  +++ ++  M+ SG +PD   F+ +L AC ++G V+
Sbjct: 127 DSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVE 186

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQN---- 455
              ++F SM   Y I+P  +H+  +++LL R G+               D+  ++     
Sbjct: 187 HGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAA 246

Query: 456 ---------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                     + +   L +L+PK+   YVLLSN+Y+A G+W++ A+ R LM+ R + K+P
Sbjct: 247 CRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEP 306

Query: 507 GWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G S+IE++  VHRF  E   H    EI+SK+++IM   +E GY+P   + LH++ EE KE
Sbjct: 307 GCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEGKE 366

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-F 622
             L  HSEKLA+AFGL+   PG  I+I K L ICGDCH+ MKY S +  R ++LRD+  F
Sbjct: 367 LGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSNCF 426

Query: 623 HYFKDGTCSCRDYW 636
           H+F++G CSC DYW
Sbjct: 427 HHFREGACSCSDYW 440



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 128/284 (45%), Gaps = 23/284 (8%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           DYA  +F+  T K++  +  L+ G   N  ++  +  F  M  + + P+++    V  + 
Sbjct: 19  DYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSAC 78

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L++L  G+ +H   +KSG+     V   L  MY + G    A KVFD      + + V
Sbjct: 79  AELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSM----EIQDV 134

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
           + W  LI G ++ G  R+++  +  M     K +  +++ L+      G ++     F+ 
Sbjct: 135 ITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQS 194

Query: 256 MPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           M E      G   +  MI+   ++G+  +A  +  QM    V+ +     + L+AC   G
Sbjct: 195 MEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQM---AVQPDATVWKALLAACRVHG 251

Query: 311 ALEAGVRVHNYISCNDFGL--KGAIGTALV-DMYAKCGNIEAAS 351
            +E G R  N    N F L  K A+   L+ ++Y+  G  E A+
Sbjct: 252 NVELGERAAN----NLFELEPKNAVPYVLLSNLYSAAGKWEEAA 291



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 96/234 (41%), Gaps = 22/234 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA  +   L +S  +   L+S  +    I+ A  +FD    +++  +  LI G A+N
Sbjct: 88  KQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQN 147

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-----HCLIVKSGVEY 162
              +  ++ +  M+   V+P+ +T+  +  + +   L+  GR           +K G E 
Sbjct: 148 GRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPE- 206

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL----RKA 218
                 H A M   LG++    +  +   +        +W  L+  C   G +    R A
Sbjct: 207 ------HYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAA 260

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAM 267
             LF + P KN   +V L + +   G  ++A +    M  +GV      SW  M
Sbjct: 261 NNLFELEP-KNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEM 313


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 184/592 (31%), Positives = 317/592 (53%), Gaps = 67/592 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
           +D ALS+F++   +++  +N +I G  +N      +  F  ML  S + P+  T   V  
Sbjct: 245 MDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLS 304

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A+L +L +G+ +H  I+++G+ Y + +   L   Y + G    A ++ D+        
Sbjct: 305 ACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDK-------- 356

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                                     ++   NV S+ +L++G+++ GD K+A E+F+ M 
Sbjct: 357 -------------------------AVVADLNVISFTALLEGYVKLGDTKQAREVFDVMN 391

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            + V++WTAMI G+ QNG+ ++A+ +F  M+ +G   N  T+ + LSACA +  L  G +
Sbjct: 392 NRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQ 451

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
           +H     +      ++  A++ +YA+ G++  A  VF +    K+ +TWT+MI  LA HG
Sbjct: 452 IHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             EQAI  F++M+  G +PD   ++ + +AC ++G +     +++ M  ++ I P + H+
Sbjct: 512 LGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHY 571

Query: 437 TVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKP 468
             +V+LL+R G  ++ ++  Q                             +  KLL + P
Sbjct: 572 ACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDP 631

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HK 526
            +  +Y  L+N+Y+A GRW D AR+  L + +++KK+ G+S+  V   VH F A    H 
Sbjct: 632 DNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHP 691

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPG 585
               I  K  ++    ++ G++P    VLH++ +E KEE L  HSEKLA+AFGLI T   
Sbjct: 692 QRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 751

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           TT++I+K L +C DCH+ +K+ SK+  REI++RD TRFH+F+DG CSC+DYW
Sbjct: 752 TTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 158/357 (44%), Gaps = 69/357 (19%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F     ++   + V++ GL     F   +  F+ M+   + P++     V  S A+   
Sbjct: 119 VFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEA 178

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             +GR +H  ++K G+     V   +  MY + G    A  VF+    K +SES   WN 
Sbjct: 179 RGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERM--KVRSESS--WNA 234

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
           +++  +  G +  A+ +F  M ++++ SW                               
Sbjct: 235 MVSLYTHQGRMDLALSMFENMEERSIVSW------------------------------- 263

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
            A+I G++QNG  + AL  F +ML A  +  ++FTV S LSACA +  L+ G ++H+YI 
Sbjct: 264 NAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYIL 323

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLV-----------------------FGETKE- 359
                    I  AL+  YAK G++E A  +                        G+TK+ 
Sbjct: 324 RTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQA 383

Query: 360 ---------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                    +D++ WTAMI G   +G+ ++A++ F+ M+ SG EP+     A+L+AC
Sbjct: 384 REVFDVMNNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSAC 440



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 128/292 (43%), Gaps = 45/292 (15%)

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF----KVFDETPEKNKSESVLL 201
           S GR +H   VK+G+   A++  +L   Y + G  RG F    ++FD+ P          
Sbjct: 42  SAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIP---------- 91

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                                    ++N  +W SL+  + + G L  A  +F QMPE+  
Sbjct: 92  -----------------------YARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDA 128

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSWT M+ G ++ G    A+  F  M+  G+  + F + + LS+CA   A   G +VH++
Sbjct: 129 VSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSF 188

Query: 322 ISCNDFGLKGAIGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           +     GL   +  A  ++ MY KCG+ E A  VF   K +   +W AM+      GR +
Sbjct: 189 VI--KLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMD 246

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            A+  F+ M     E     + AI+     +G   +AL FF  M     +EP
Sbjct: 247 LALSMFENM----EERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEP 294



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 169/409 (41%), Gaps = 62/409 (15%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F+R+ TA        SS +P +  T T ++S   +    K  +Q+H+ I+   +  SS+I
Sbjct: 283 FSRMLTA--------SSMEP-DEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQI 333

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLH----------------------IFNV---- 99
              LIS+ +   S++ A  I D     +L+                      +F+V    
Sbjct: 334 MNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNR 393

Query: 100 -------LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
                  +I G  +N      +  F  M+R    PN  T   V  + ASL+ L  G+ +H
Sbjct: 394 DVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIH 453

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  ++S  E    V   +  +Y + G    A +VFD+   + ++   + W  +I   ++ 
Sbjct: 454 CRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKET---VTWTSMIVALAQH 510

Query: 213 GYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQM-PEKGVVS---- 263
           G   +A+ LF  M     K +  +++ +       G + K    +EQM  E G+V     
Sbjct: 511 GLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH 570

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV--GALEAGVRVHNY 321
           +  M++  ++ G   +A   F Q +     A D  V  +L A  +V   A  A +     
Sbjct: 571 YACMVDLLARAGLLTEAHE-FIQRMPV---APDTVVWGSLLAACRVRKNADLAELAAEKL 626

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           +S  D    GA  +AL ++Y+ CG    A+ ++   K+K +   T   W
Sbjct: 627 LSI-DPDNSGAY-SALANVYSACGRWNDAARIWKLRKDKAVKKETGFSW 673


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 326/629 (51%), Gaps = 80/629 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A S+FD    +++  +N +I GL +N +    +     M    ++ N +T   +      
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  +S    +H  ++K G+E+D FV   L +MY + G    A K F +    +    V+ 
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITD----VVS 384

Query: 202 WNVLI-------NGCSKIGYLRKAVELFGMMPK-----------------KNVAS----- 232
           WN +I       +  +  G+  K ++L G  P                  KN  S     
Sbjct: 385 WNSIIAAYEQNDDPVTAHGFFVK-MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFI 443

Query: 233 ----WV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
               W+        +++D + + G L  A ++FE +P K V+SW  +I G++QNG A +A
Sbjct: 444 MRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEA 503

Query: 281 LAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           + ++  M +   +  N  T VS L A A VGAL+ G+++H  +   +  L   + T L+D
Sbjct: 504 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLID 563

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           +Y KCG +  A  +F +  ++  +TW A+I    IHG  E+ ++ F +M+  G +PD   
Sbjct: 564 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 623

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN- 458
           F+++L+AC +SG V+     F  M+ +Y I+PS+KH+  +V+LL R G     Y   ++ 
Sbjct: 624 FVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 682

Query: 459 ---------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                                      +  +L ++  K+   YVLLSNIYA  G+W+ V 
Sbjct: 683 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 742

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR+L + R +KK PGWS IEVN  V  F  G   H   KEI+ +L  + A  +  GY+P
Sbjct: 743 KVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIP 802

Query: 550 GTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
              +VL +++E EKE  L  HSE+LA+AFG+I T P + I+I K L +CGDCH+  K+ S
Sbjct: 803 DYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS 862

Query: 609 KISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I+QREIV+RD+ RFH+FKDG CSC DYW
Sbjct: 863 RITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 51/440 (11%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           SS+   N   E     L  SS  T   + +HA +++     S  I+T+L++  +    + 
Sbjct: 109 SSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVS 168

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSV 139
            +   FD    K+++ +N +I     N HF   I  F  +L +S +RP+  T+P V K+ 
Sbjct: 169 LSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC 228

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
            +   L  GR +HC   K G +++ FV   L  MY + G T  A  +FD+ P ++     
Sbjct: 229 GT---LVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS-- 283

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS-------------------- 235
             WN +I+G  + G   +A+++   M     K N  + VS                    
Sbjct: 284 --WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 236 ---------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                          LI+ + + G+L+ A + F+QM    VVSW ++I  + QN +   A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVD 339
              F +M   G + +  T+VS  S  A+    +    VH +I    + ++   IG A+VD
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDG 397
           MYAK G +++A  VF     KD+++W  +I G A +G   +AI+ + KMM    E  P+ 
Sbjct: 462 MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQ 520

Query: 398 TVFLAILTACWYSGQVKLAL 417
             +++IL A  + G ++  +
Sbjct: 521 GTWVSILPAYAHVGALQQGM 540



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 103/419 (24%), Positives = 178/419 (42%), Gaps = 55/419 (13%)

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
             + LH L+V +G     F+   L ++Y  LG    +   FD+ P+K+    V  WN +I
Sbjct: 134 FAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKD----VYAWNSMI 189

Query: 207 NGCSKIGYLRKAVELF------------------------GMMPKKNVASWV-------- 234
           +     G+  +A+  F                         ++  + +  W         
Sbjct: 190 SAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQWN 249

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                SLI  + R G    A  LF+ MP + + SW AMI+G  QNG A +AL +  +M  
Sbjct: 250 VFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRL 309

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G++ N  TVVS L  C ++G +   + +H Y+  +       +  AL++MYAK GN+E 
Sbjct: 310 EGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLED 369

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A   F +    D+++W ++I     +     A  +F KM  +G +PD    +++ +    
Sbjct: 370 ARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQ 429

Query: 410 SGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
           S   K + +     MR  + +E  V  +  VV++ +++G          +S  K+ ++ P
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNA-VVDMYAKLGL--------LDSAHKVFEIIP 480

Query: 469 -KHPSSYVLLSNIYAAEGRWKDVARVRTLMQ--RRSIKKDPGW-SYIEVNGHVHRFEAG 523
            K   S+  L   YA  G   +   V  +M+  +  I     W S +    HV   + G
Sbjct: 481 VKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG 539


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 209/696 (30%), Positives = 348/696 (50%), Gaps = 75/696 (10%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A+   T +K  +   + +T   ++S   S+ +  +  Q+H+ +I   + +   +   L+ 
Sbjct: 298 ALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLD 357

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
                  I  A  +F     +N+ ++NV++    +  +       F  M    + PN+ T
Sbjct: 358 LYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFT 417

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           YP + ++  S+  L LG  +H  ++K+G +++ +V   L DMY + GK   A  +     
Sbjct: 418 YPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT 477

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--------------------- 230
           E    + V+ W  LI+G ++     +A++ F  M  + +                     
Sbjct: 478 E----DDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALN 533

Query: 231 -------ASWVS-----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                   S+VS           L+  + R G +K+A   FE++  K  +SW  +I+GF+
Sbjct: 534 QGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFA 593

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q+G  E AL +F QM  A + A+ FT  SA+SA A +  ++ G ++H  I    F     
Sbjct: 594 QSGYCEDALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIE 653

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +  AL+  YAKCG+IE A   F E  EK+ ++W AMI G + HG   +A+  F+KM   G
Sbjct: 654 VSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVG 713

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG----- 447
             P+   F+ +L+AC + G V   L +F+SM  ++ + P   H+  VV+L+SR G     
Sbjct: 714 EMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRA 773

Query: 448 ----------QDSQGYQNSQNSFT-------------KLLQLKPKHPSSYVLLSNIYAAE 484
                      D+  ++   ++ T              LL+L+P+  ++YVLLSN+YA  
Sbjct: 774 RKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVS 833

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
           G+W    + R +M+ R +KK+PG S+IEV   VH F  G   H LA +I+  L ++   A
Sbjct: 834 GKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKA 893

Query: 543 REQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
            E GY      +L+++ +E+K+  +  HSEKLA+ FGL+  +    I ++K L +C DCH
Sbjct: 894 AEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCH 953

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S +K+ SKIS R I++RD  RFH+F+ G CSC+DYW
Sbjct: 954 SWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 126/498 (25%), Positives = 222/498 (44%), Gaps = 57/498 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            QIHA+II H L  S  I+  LI   + +  I  A  +FD+   K+   +  +I G ++N
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQN 191

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            + +  I  F  M    + P    +  V      + L  +G  LH L+ K G   + +V 
Sbjct: 192 GYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVC 251

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  +Y ++     A KVF +   K++    + +N LI+G ++ G+   A+ELF  M +
Sbjct: 252 NALVTLYSRMPNFVSAEKVFSKMQSKDE----VSFNSLISGLAQQGFSDGALELFTKMKR 307

Query: 228 K-------NVASWVS--------------------------------LIDGFMRKGDLKK 248
                    VAS +S                                L+D ++   D+K 
Sbjct: 308 DYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKT 367

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F     + VV W  M+  F +     ++  +F QM   G+  N FT  S L  C  
Sbjct: 368 AHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTS 427

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           VGAL+ G ++H  +    F     + + L+DMYAK G ++ A ++     E D+++WTA+
Sbjct: 428 VGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTAL 487

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G A H  + +A+++FK+M+  G + D   F + ++AC     ++ ALN    +    +
Sbjct: 488 ISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISAC---AGIQ-ALNQGRQIHAQSY 543

Query: 429 IEPSVKHHTV---VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
           +    +  ++   +V+L +R G+  + Y        +  ++  K   S+  L + +A  G
Sbjct: 544 VSGYSEDLSIGNALVSLYARCGRIKEAY-------LEFEKIDAKDSISWNGLISGFAQSG 596

Query: 486 RWKDVARVRTLMQRRSIK 503
             +D  +V   M R  ++
Sbjct: 597 YCEDALKVFAQMNRAKLE 614



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/398 (27%), Positives = 185/398 (46%), Gaps = 43/398 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            Q+HA +  +     + +   L++  S   +   A  +F     K+   FN LI GLA+ 
Sbjct: 233 EQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQ 292

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M R  ++P+ +T   +  + AS   L  G  LH  ++K+G+  D  V 
Sbjct: 293 GFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVE 352

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L D+YV     + A ++F       ++E+V+LWNV++    K+  L ++  +F     
Sbjct: 353 GALLDLYVNCSDIKTAHEMFLTA----QTENVVLWNVMLVAFGKLDNLSESFRIFRQMQI 408

Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
            G++P +                                 NV     LID + + G L  
Sbjct: 409 KGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDT 468

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +   + E  VVSWTA+I+G++Q+    +AL  F +ML+ G+++++    SA+SACA 
Sbjct: 469 AHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAG 528

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + AL  G ++H     + +    +IG ALV +YA+CG I+ A L F +   KD ++W  +
Sbjct: 529 IQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGL 588

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I G A  G  E A++ F +M  +  E     F + ++A
Sbjct: 589 ISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSA 626



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 186/431 (43%), Gaps = 44/431 (10%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N  T   ++ L  +S S  + +++H +I+       S +  +L+        +D  + +
Sbjct: 8   ANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKV 67

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL- 144
           F+    +++  ++ +I G  E       +  F  M+  +V P  +++  V ++ +   + 
Sbjct: 68  FEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIG 127

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           +     +H  I+  G+     +   L  +Y + G    A KVFD    K+     + W  
Sbjct: 128 IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDS----VSWVA 183

Query: 205 LINGCSKIGYLRKAVELF------GMMPKKNVASWV------------------------ 234
           +I+G S+ GY  +A+ LF      G+ P   V S V                        
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L+  + R  +   A ++F +M  K  VS+ ++I+G +Q G ++ AL +F 
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M    ++ +  TV S LSACA  GAL  G ++H+Y+          +  AL+D+Y  C 
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS 363

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           +I+ A  +F   + ++++ W  M+          ++ + F++M   G  P+   + +IL 
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423

Query: 406 ACWYSGQVKLA 416
            C   G + L 
Sbjct: 424 TCTSVGALDLG 434



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 131/278 (47%), Gaps = 23/278 (8%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+D +   GDL    ++FE MP + V SW  +I+GF +   + + L +F  M++  V   
Sbjct: 51  LVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPT 110

Query: 296 DFTVVSALSACA--KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           + +  S L AC+  ++G +    ++H  I C+       I   L+ +YAK G I +A  V
Sbjct: 111 EISFASVLRACSGHRIG-IRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKV 169

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F     KD ++W AMI G + +G  E+AI  F +M  +G  P   VF ++L+ C    ++
Sbjct: 170 FDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGC---TKI 226

Query: 414 KLALNFFD------SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
           KL    FD      ++ F Y         T V N L  +      + +++  F+K   ++
Sbjct: 227 KL----FDVGEQLHALVFKY----GSSLETYVCNALVTLYSRMPNFVSAEKVFSK---MQ 275

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            K   S+  L +  A +G       + T M+R  +K D
Sbjct: 276 SKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPD 313



 Score = 47.0 bits (110), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 50/117 (42%)

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G+ AN  T +  L  C   G+L    ++H  I    FG +  +   LVD+Y   G+++  
Sbjct: 5   GICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGV 64

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             VF +   + + +W  +I G        + +  F  M+     P    F ++L AC
Sbjct: 65  VKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRAC 121


>gi|212721478|ref|NP_001131178.1| uncharacterized protein LOC100192486 [Zea mays]
 gi|194690792|gb|ACF79480.1| unknown [Zea mays]
          Length = 617

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 211/647 (32%), Positives = 315/647 (48%), Gaps = 86/647 (13%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           +L+ S      LR +HA +++    AS       ++S +    + YA  +     P  L 
Sbjct: 11  TLLPSLAEASHLRALHAHLVVSGRLASPSHLAAFLASLASSNHLSYARLVLPQ-RPATLL 69

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--------------AS 141
             N  IR LA     + C++ F     L + P+  +  F+ ++               A 
Sbjct: 70  AHNAFIRALARGP--RPCLA-FAAFRDLPLPPDHYSLNFLVRAATALVASAAEEKHVSAE 126

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           ++        H   V+ G   D  V+  +  MY  LG    +   F E            
Sbjct: 127 VNARLQAVSAHGAAVRWGHAADPHVQSGVLSMYAALGDVASSRAAFAEI----------- 175

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                  C                   +V    +++      GD+  A +LF+ MP++  
Sbjct: 176 ------AC------------------PDVVCVTAMVAALAAGGDVDAARDLFDGMPQRDH 211

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           V+W+AMI G+   G + +AL +F +ML AG    + T+VS L+ACA++G L+ G  VH Y
Sbjct: 212 VAWSAMIAGYMHVGRSREALMLFDEMLSAGTTVGEATLVSVLTACAQIGTLDRGKWVHWY 271

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +      +   +GTALVDMY+KCG +  A  VF    E+++ TWT+ + GLA++G   + 
Sbjct: 272 VRSRGMQMSIKLGTALVDMYSKCGAVVTAMEVFESMAERNVYTWTSAVSGLAMNGMGTEC 331

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +Q FK+M  +G +P+G  F+A+L  C  +G V      FDSM   Y ++P  +H+  +V+
Sbjct: 332 LQLFKRMEGAGIQPNGVSFVAVLRGCSMAGLVDEGRACFDSMD-KYGVDPWPEHYGCMVD 390

Query: 442 LLSRVGQ--DSQGYQNS--------------------------QNSFTKLLQLKPKHPSS 473
           L  R G+  D+  + N                           + +  KLL ++ ++ ++
Sbjct: 391 LYGRAGRLDDAISFINDMPMEPHEGVWGALLNASRIHNSVDLGKYALDKLLAIESENDAA 450

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEI 531
           +V LSNIYA    WK V+RVR +M+ + +KK PGWS IEV+G VH F  GG  H    EI
Sbjct: 451 HVQLSNIYAESQNWKGVSRVRGMMKAKGVKKVPGWSTIEVDGKVHEFYVGGRLHPRYNEI 510

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKI 590
              L ++    R QGY   T  VL +I+EE KE A+  HSEKLALAFGLI       I+I
Sbjct: 511 ELMLAEMDRRLRLQGYTANTREVLFDIEEEEKEGAISLHSEKLALAFGLIVLPEDVEIRI 570

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           VK L +C DCH  +K  SK+  REIV+RD  RFH+FK G CSCRDYW
Sbjct: 571 VKNLRVCMDCHRYIKLVSKVFNREIVMRDRNRFHHFKGGECSCRDYW 617


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 219/725 (30%), Positives = 342/725 (47%), Gaps = 115/725 (15%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +N T   +       +S +     HA  ++    ++  +   L++  S  +S+  A  +F
Sbjct: 126 DNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVF 185

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLL 145
           D  +  ++  +N +I   A+    +  +  F  M      RP+ +T   V    ASL   
Sbjct: 186 DEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTH 245

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYV------------------------------ 175
           SLG+ LHC  V S +  + FV   L DMY                               
Sbjct: 246 SLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGY 305

Query: 176 -QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNV 230
            Q+G+   A ++F++  E+     V+ W+  I+G ++ G   +A+ +   M     K N 
Sbjct: 306 SQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNE 365

Query: 231 ASWVSLIDGFMRKG-----------------DLKKAGELFEQM----------------- 256
            + +S++ G    G                 DL+K G   E M                 
Sbjct: 366 VTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDT 425

Query: 257 ----------PEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALS 304
                      E+ VV+WT MI G+SQ+G+A KAL +  +M   D   R N FT+  AL 
Sbjct: 426 ARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALV 485

Query: 305 ACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           ACA + AL  G ++H Y   N    +   +   L+DMYAKCG+I  A LVF     K+ +
Sbjct: 486 ACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEV 545

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           TWT+++ G  +HG  E+A+  F +M   G + DG   L +L AC +SG +   + +F+ M
Sbjct: 546 TWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRM 605

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QN 455
           +  + + P  +H+  +V+LL R G+ +                               + 
Sbjct: 606 KTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVEL 665

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
            + +  K+ +L   H  SY LLSN+YA  GRWKDV R+R+LM+ + +KK PG S++E   
Sbjct: 666 GEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIK 725

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEK 572
               F  G   H  AKEI+  L D M   ++ GY+P T + LH++  EEK++ L  HSEK
Sbjct: 726 GTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEK 785

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LALA+G++ T  G  I+I K L +CGDCH+   Y S+I   +I+LRD +RFH+FK+G+CS
Sbjct: 786 LALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCS 845

Query: 632 CRDYW 636
           C+ YW
Sbjct: 846 CKGYW 850



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/459 (26%), Positives = 195/459 (42%), Gaps = 93/459 (20%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
            IH   +  Q++ IH +++   +  +  +T+ LIS+      + +A+S+   F P +  +
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGIL-TLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGV 92

Query: 97  F--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           +  N LIR   +N     C+  F  M  LS  P+  T+PFV K+   +S +  G   H L
Sbjct: 93  YHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHAL 152

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
            + +G   + FV   L  MY +      A KVFDE    +    V+ WN +I   +K+G 
Sbjct: 153 SLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWD----VVSWNSIIESYAKLGK 208

Query: 215 LRKAVELFGMMPK----------------------------------------KNVASWV 234
            + A+E+F  M                                          +N+    
Sbjct: 209 PKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGN 268

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF---------- 284
            L+D + + G + +A  +F  M  K VVSW AM+ G+SQ G  E A+ +F          
Sbjct: 269 CLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKM 328

Query: 285 -------------------------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
                                     QML +G++ N+ T++S LS CA VGAL  G  +H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 320 NY-------ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAMIW 370
            Y       +  N  G +  +   L+DMYAKC  ++ A  +F     KE+D++TWT MI 
Sbjct: 389 CYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIG 448

Query: 371 GLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFLAILTAC 407
           G + HG   +A++   +M      T P+       L AC
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/301 (25%), Positives = 129/301 (42%), Gaps = 26/301 (8%)

Query: 236 LIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           LI  ++  G L  A  L  + P  + GV  W ++I  +  NG A K L +F  M      
Sbjct: 65  LISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWT 124

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            +++T      AC ++ ++  G   H       F     +G ALV MY++C ++  A  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKV 184

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQ 412
           F E    D+++W ++I   A  G+ + A++ F +M    G  PD    + +L  C   G 
Sbjct: 185 FDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGT 244

Query: 413 VKLA--LNFF---DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
             L   L+ F     M  + F+         +V++ ++ G   +       + T    + 
Sbjct: 245 HSLGKQLHCFAVTSEMIQNMFVG------NCLVDMYAKCGMMDE-------ANTVFSNMS 291

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD-PGWSYIEVNGHVHR---FEAG 523
            K   S+  +   Y+  GR++D  R+   MQ   IK D   WS   ++G+  R   +EA 
Sbjct: 292 VKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS-AAISGYAQRGLGYEAL 350

Query: 524 G 524
           G
Sbjct: 351 G 351



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 124/311 (39%), Gaps = 54/311 (17%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-------FASSRITTQLIS 71
           + S  KP N +T   ++S   S  +    ++IH   I + +          + +  QLI 
Sbjct: 357 LSSGIKP-NEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415

Query: 72  SASLHKSIDYALSIFDHFTPKNLHI--FNVLIRGLAENSHFQSCISHFVFMLR--LSVRP 127
             +  K +D A ++FD  +PK   +  + V+I G +++      +     M       RP
Sbjct: 416 MYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE-YDAFVRVHLADMYVQLGKTRGAFKV 186
           N  T      + ASL+ L +G+ +H   +++       FV   L DMY + G    A  V
Sbjct: 476 NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLV 535

Query: 187 FDETPEKNK----------------SESVLLWN---------------VLINGCSKIGYL 215
           FD    KN+                 E++ +++               V++  CS  G +
Sbjct: 536 FDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMI 595

Query: 216 RKAVE-------LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAM 267
            + +E       +FG+ P      +  L+D   R G L  A  L E+MP E   V W A 
Sbjct: 596 DQGMEYFNRMKTVFGVSPGPE--HYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAF 653

Query: 268 INGFSQNGEAE 278
           ++    +G+ E
Sbjct: 654 LSCCRIHGKVE 664


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  325 bits (834), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 201/573 (35%), Positives = 299/573 (52%), Gaps = 78/573 (13%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +V S   + L R LHC +VKS      F+   L   Y++LG    A K+FDE PE++   
Sbjct: 40  AVKSCVSIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGHDVCAEKLFDEMPERD--- 96

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF----------------------------------- 222
            ++ WN LI+G S  GYL K  E+                                    
Sbjct: 97  -LVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRC 155

Query: 223 --GMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
             G++ K  V   V +++ F+    + GDL  + +LFE +  K +VSW  MI    QNG 
Sbjct: 156 IHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGL 215

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
           AEK LA F      G   +  T ++ L +C  +G +     +H  I    F     I TA
Sbjct: 216 AEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTA 275

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+D+Y+K G +E +S VF E    D + WTAM+   A HG    AI++F+ M++ G  PD
Sbjct: 276 LLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPD 335

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQG-- 452
              F  +L AC +SG V+   ++F++M   Y I+P + H++ +V+LL R G  QD+ G  
Sbjct: 336 HVTFTHLLNACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLI 395

Query: 453 ---------------------YQNSQ---NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                                Y+++Q    +  +L +L+P+   +YV+LSNIY+A G WK
Sbjct: 396 KEMPMEPSSGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWK 455

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR-EQ 545
           D +R+R LM+++ + +  G SYIE    +H+F  G   H  +++I  KL++I    + E 
Sbjct: 456 DASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEM 515

Query: 546 GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY   TE+VLH++ E+ KEE +  HSEK+A+AFGL+  +P   I I K L ICGDCH   
Sbjct: 516 GYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETA 575

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K  S I +R I++RD+ RFH+F DG+CSC DYW
Sbjct: 576 KAISLIEKRRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/270 (19%), Positives = 120/270 (44%), Gaps = 13/270 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T   +IS      S ++ R IH  ++   +    ++    I+       +  +  +F
Sbjct: 133 NEVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLF 192

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +  + KNL  +N +I    +N   +  +++F    R+   P++ T+  V +S   + ++ 
Sbjct: 193 EDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVR 252

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L +G+H LI+  G   +  +   L D+Y +LG+   +  VF E      S   + W  ++
Sbjct: 253 LAQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEIT----SPDSMAWTAML 308

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
              +  G+ R A++ F +M    ++    ++  L++     G +++    FE M ++  +
Sbjct: 309 AAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGKHYFETMSKRYRI 368

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQM 287
                 ++ M++   ++G  + A  +  +M
Sbjct: 369 DPRLDHYSCMVDLLGRSGLLQDAYGLIKEM 398



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 9/130 (6%)

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F   LDA V     ++++A+ +C    ++E    +H  +  +     G IG  LV  Y +
Sbjct: 26  FVHSLDANVS----SLIAAVKSCV---SIELCRLLHCKVVKSVSYRHGFIGDQLVGCYLR 78

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFL 401
            G+   A  +F E  E+DL++W ++I G +  G   +  +   +MM S  G  P+   FL
Sbjct: 79  LGHDVCAEKLFDEMPERDLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFL 138

Query: 402 AILTACWYSG 411
           ++++AC Y G
Sbjct: 139 SMISACVYGG 148


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 192/579 (33%), Positives = 299/579 (51%), Gaps = 69/579 (11%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           S RPN  T+     + A L  L     +      +G  +D FV   L  +Y + G    A
Sbjct: 102 SARPNSTTFTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVCSALLHLYSRCGAMEEA 161

Query: 184 FKVFDETPEKNK-------------------------------SESVLLWNVLINGCSKI 212
            +VFD  P K++                               S+  ++   +I  C   
Sbjct: 162 IRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVSDDEVVMVGVIQACMST 221

Query: 213 GYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
           G  R    + G +     + +V +  SL+  + + G L  A ++F  MP +  V+W+A+I
Sbjct: 222 GNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALI 281

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           +GF+QNG A +AL +F ++   G++   + +VSAL ACA VG L+ G  +H +I      
Sbjct: 282 SGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFI-LRRLE 340

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
            +  +GTA++DMY+KCG++E+A  +F +   +DL+ W A+I     HG    A+  F+++
Sbjct: 341 WQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQEL 400

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG- 447
             +G +PD   F ++L+A  +SG V+    +FD M  ++ IEP+ KH+  +V+LL+R G 
Sbjct: 401 NETGIKPDHATFASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGL 460

Query: 448 ----QDSQGYQNSQNSFT-----------------------KLLQLKPKHPSSYVLLSNI 480
                D      ++ +                         K+L+L+P+      L+SN+
Sbjct: 461 VEEANDMLASMQTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNL 520

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDI 538
           YAA  +W  V  +R LM+    KK PG+S IEV G  H F  E   H   +EI   +  +
Sbjct: 521 YAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKL 580

Query: 539 MAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
            +  R+ GY+P TE+V H++ E+  + L  HSE+LA+AFGL+ T+PGT + I+K L +CG
Sbjct: 581 NSEMRKLGYVPRTEFVYHDLDED--QLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCG 638

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCH  +KY SKI  REIV+RD  RFH+FKDG CSC DYW
Sbjct: 639 DCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 5/242 (2%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA----VELFGMMPKKNVASW 233
           G    A +VF   P   +  S   + + +  C+++G L  A    V  F      +V   
Sbjct: 87  GAPGAALRVFRALPSSARPNSTT-FTLTLTACARLGDLDAAESVRVRAFAAGYGHDVFVC 145

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +L+  + R G +++A  +F+ MP K  V+W+ M+ GF   G   +ALAM+ +M + GV 
Sbjct: 146 SALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMREHGVS 205

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            ++  +V  + AC   G    G  VH  +  +   +     T+LV MYAK G+++ A  V
Sbjct: 206 DDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQV 265

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F     ++ +TW+A+I G A +GR  +A+  F+++   G +P     ++ L AC   G +
Sbjct: 266 FRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFL 325

Query: 414 KL 415
           KL
Sbjct: 326 KL 327



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/292 (21%), Positives = 130/292 (44%), Gaps = 18/292 (6%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
            R   A+A  + ++      + +    +I    S+ + +    +H +++ H +      T
Sbjct: 187 GRPVEALAMYSRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTT 246

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T L+S  + +  +D A  +F     +N   ++ LI G A+N      +  F  +    ++
Sbjct: 247 TSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQ 306

Query: 127 PNRLTYPFVSK--SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           P   ++  VS   + AS+  L LG+ +H  I++  +E+   +   + DMY + G    A 
Sbjct: 307 P--CSWALVSALLACASVGFLKLGKSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESAR 363

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGF 240
           K+F+    K  S  ++LWN +I  C   G    A+ LF  + +  +    A++ SL+   
Sbjct: 364 KLFN----KLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSAL 419

Query: 241 MRKGDLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQM 287
              G +++    F++M  E G+      +  +++  +++G  E+A  M   M
Sbjct: 420 SHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASM 471


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 216/685 (31%), Positives = 347/685 (50%), Gaps = 83/685 (12%)

Query: 30  TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSI 85
           T  H+ SL+ S      LR+   +HA+++L    A+S  +   LI+  S    +  AL +
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     +N   +  L+ GL++N      ++ F  M R  V P R      +++ A+L   
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP 138

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  LHC+ V+ G + + FV  +LADMY + G    A +VFD+ P+K+     + W  +
Sbjct: 139 LPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKD----AVAWTAM 194

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVAS-------------------WVS----------- 235
           I+G +K G L  AV  F  M ++ +                     W+S           
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAG 254

Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMF 284
                     LID + +  D++ A  + +  P    VVS T+MI+G+ +    E+AL ++
Sbjct: 255 FELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIY 314

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            ++   GV  N+FT  S +  CA    LE G ++H  +   D      +G+ LVDMY KC
Sbjct: 315 VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKC 374

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G I  +  +F E + +  + W A+I   A HG   +AIQ F +M+YSG  P+   F+++L
Sbjct: 375 GLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLL 434

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------- 453
           TAC ++G V   L +F SM+  + IEP  +H++ +++   R G+  + Y           
Sbjct: 435 TACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPN 494

Query: 454 -----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                            +  + +   L++L+P +   +V LS IYA+ G+W+DV  VR L
Sbjct: 495 AYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKL 554

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           M+   IKK PG+S+++ N   H F  E   H   K+I+ KLE++    +E+GY+P T ++
Sbjct: 555 MRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFL 614

Query: 555 LHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK-LTICGDCHSLMKYASKISQ 612
             N+++  KE  L  HSE++A+AF LI + P T   IVKK L IC DCH+  K+  K+ +
Sbjct: 615 PCNLEDIAKERILRYHSERIAVAFALI-SMPATKPIIVKKNLRICIDCHTAFKFICKVER 673

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
           R+I++RD +RFH+F +G CSC DYW
Sbjct: 674 RDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 104/249 (41%), Gaps = 36/249 (14%)

Query: 163 DAFVRVHLADMYVQLGKT----RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           DA   VHLA +    G+     RG             + S  L N LI   S    L  A
Sbjct: 16  DAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASA 75

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           + LF  MP++N  SW                               T +++G SQN    
Sbjct: 76  LRLFAAMPRRNAVSW-------------------------------TTLVSGLSQNLMHA 104

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
            ALA F  M  AGV    F + SA  A A +GA   G ++H       F  +  + + L 
Sbjct: 105 DALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLA 164

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDG 397
           DMY+KCG +  A  VF +  +KD + WTAMI G A +G  E A+  F+ M   G    D 
Sbjct: 165 DMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQ 224

Query: 398 TVFLAILTA 406
            VF ++L+A
Sbjct: 225 HVFCSVLSA 233


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 211/714 (29%), Positives = 347/714 (48%), Gaps = 105/714 (14%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H P  ++   H+++    +    + R++       NLF  +     L+S+ +  + +D  
Sbjct: 37  HPPPTHLL-NHLLTAYGKAGRHARARRVFDATPHPNLFTYN----ALLSTLAHARLLDDM 91

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSVA 140
            S+F     ++   +N +I G +        +  +  +LR   SVRP+R+T   +  + +
Sbjct: 92  DSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAAS 151

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
           +L   +LGR  HC I++ G   +AFV   L  MY ++G    A +VFDE   KN      
Sbjct: 152 ALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNT 211

Query: 195 ---------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMP------- 226
                                     + W  ++ G ++ G   +A+  F  M        
Sbjct: 212 MITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAID 271

Query: 227 --------------------------------KKNVASWVSLIDGFMRKGDLKKAGELFE 254
                                             NV    +L+D + +   +K A   F 
Sbjct: 272 QYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFR 331

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           +M  K ++SWTA+I G+ QNG +E+A+ +F +M   G+  +DFT+ S +S+CA + +LE 
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLASLEE 391

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G + H     +       +  ALV +Y KCG+IE A  +F E    D ++WTA++ G A 
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
            GR ++ I  F+KM+    +PDG  F+ +L+AC  +G V+   ++F SM+ D+ I P   
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDD 511

Query: 435 HHTVVVNLLSRVGQ---------------DSQGY-------------QNSQNSFTKLLQL 466
           H+T +++L SR G+               D+ G+             +  Q +   LL++
Sbjct: 512 HYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEI 571

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
            P++P+SYVLL +++A +G W  VA++R  M+ R +KK+PG S+I+    VH F A    
Sbjct: 572 DPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQS 631

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTT 583
           H  +K I+ KLE + +   E+GY P    VLH++ + +K   +  HSEKLA+AFGL+   
Sbjct: 632 HPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVP 691

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
               I+IVK L +C DCH+  K  SKI+ R+I++RD  RFH F +G CSC D+W
Sbjct: 692 HEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRDAVRFHKFSNGVCSCGDFW 745


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 210/668 (31%), Positives = 339/668 (50%), Gaps = 82/668 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I+S   S+   K+ RQ+  ++   N+ + +     L+S    ++ I  A ++F+    +N
Sbjct: 54  IVSGYFSNGLPKEARQLFDEMSERNVVSWN----GLVSGYIKNRMIVEARNVFELMPERN 109

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +  +++G  +        S F    R+  R N +++  +   +     +   R L+ 
Sbjct: 110 VVSWTAMVKGYMQEGMVGEAESLF---WRMPER-NEVSWTVMFGGLIDDGRIDKARKLYD 165

Query: 154 LI-VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           ++ VK     D     ++     + G+   A  +FDE  E+N    V+ W  +I G  + 
Sbjct: 166 MMPVK-----DVVASTNMIGGLCREGRVDEARLIFDEMRERN----VVTWTTMITGYRQN 216

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
             +  A +LF +MP+K   SW S++ G+   G ++ A E FE MP K V++  AMI GF 
Sbjct: 217 NRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGFG 276

Query: 273 QNGEAEKA-------------------------------LAMFFQMLDAGVRANDFTVVS 301
           + GE  KA                               L +F QM   GVR +  +++S
Sbjct: 277 EVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLIS 336

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LS CA + +L+ G +VH ++    F     + + L+ MY KCG +  A LVF     KD
Sbjct: 337 ILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKD 396

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           ++ W ++I G A HG  E+A++ F +M  SGT P+    +AILTAC Y+G+++  L  F+
Sbjct: 397 IIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTACSYAGKLEEGLEIFE 456

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN-------------------------- 455
           SM   + + P+V+H++  V++L R GQ  +  +                           
Sbjct: 457 SMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSRL 516

Query: 456 --SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
             ++ +  KL + +P +  +YVLLS+I A+  +W DVA VR  M+  ++ K PG S+IEV
Sbjct: 517 DLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEV 576

Query: 514 NGHVHRFEAGGHKLAKE---IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCH 569
              VH F  GG K   E   I   LE      RE GY P    VLH++ +EEK ++L  H
Sbjct: 577 GKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRH 636

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SE+LA+A+GL++   G  I+++K L +CGDCH+ +K  SK+++REI+LRD  RFH+F +G
Sbjct: 637 SERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNG 696

Query: 629 TCSCRDYW 636
            CSCRDYW
Sbjct: 697 ECSCRDYW 704



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 141/277 (50%), Gaps = 21/277 (7%)

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
           ++GK   A K FD    K    ++  WN +++G    G  ++A +LF  M ++NV SW  
Sbjct: 29  RIGKINEARKFFDSLQFK----AIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNG 84

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+ G+++   + +A  +FE MPE+ VVSWTAM+ G+ Q G   +A ++F++M +     N
Sbjct: 85  LVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPE----RN 140

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           + +           G ++   ++++ +   D        T ++    + G ++ A L+F 
Sbjct: 141 EVSWTVMFGGLIDDGRIDKARKLYDMMPVKDV----VASTNMIGGLCREGRVDEARLIFD 196

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E +E++++TWT MI G   + R + A + F ++M   TE   T  L   T    SG+++ 
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLF-EVMPEKTEVSWTSMLLGYT---LSGRIED 252

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
           A  FF+ M     ++P +  + ++V     VG+ S+ 
Sbjct: 253 AEEFFEVMP----MKPVIACNAMIVG-FGEVGEISKA 284


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 207/628 (32%), Positives = 322/628 (51%), Gaps = 114/628 (18%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV------- 175
           L +RP+ ++   V  + AS+   S G+ +H   ++SG+  D FV   + DMY        
Sbjct: 225 LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEE 284

Query: 176 ------------------------QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
                                   Q+G+   A  +F++  E+    +V+ W+ +I G ++
Sbjct: 285 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQ 344

Query: 212 IGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDL--------------------- 246
            G   +A+++F  M     + NV + VSL+ G    G L                     
Sbjct: 345 RGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDEND 404

Query: 247 ---------------------KKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAM 283
                                K A  +F+ +P  ++ VV+WT +I G +Q+GEA +AL +
Sbjct: 405 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 464

Query: 284 FFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDM 340
           F QML  D  V  N FT+  AL ACA++GAL  G ++H Y+  N F      +   L+DM
Sbjct: 465 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 524

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y+K G+++AA +VF    +++ ++WT+++ G  +HGR E+A+Q F +M   G  PDG  F
Sbjct: 525 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTF 584

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------- 452
           + +L AC +SG V   +N+F+ M  D+ + P  +H+  +V+LLSR G+  +         
Sbjct: 585 VVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 644

Query: 453 -----------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                            Y N    + +  +LL+L+  +  SY LLSNIYA    WKDVAR
Sbjct: 645 MKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVAR 704

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           +R LM+   IKK PG S+++       F AG   H ++++I+  L D+M   +  GY+P 
Sbjct: 705 IRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD 764

Query: 551 TEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
             + LH++  EEK + L  HSEKLALA+G++ T PG  I+I K L  CGDCHS   Y S 
Sbjct: 765 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISI 824

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I + EI++RD +RFH+FK+G+CSCR YW
Sbjct: 825 IIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 144/578 (24%), Positives = 234/578 (40%), Gaps = 103/578 (17%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL 75
           TT   S+   + ++T T    L H   S      IH Q+++  L       T +IS    
Sbjct: 18  TTFFFSTASSTTDLTST----LFHQCKSLASAELIHQQLLVQGL---PHDPTHIISMYLT 70

Query: 76  HKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
             S   ALS+     P +  +F  N LIR        +  +  +  M RL  RP+  T+P
Sbjct: 71  FNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFP 130

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           FV K+   +     G  +H ++  SG E++ FV   L  MY + G    A +VFDE  E+
Sbjct: 131 FVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 194 NKSESVLLWNVLING-----------------CSKIGYLRKAVELFGMMPK-KNVASWV- 234
              + ++ WN ++                      +G    AV L  ++P   +V +W  
Sbjct: 191 GVGD-LVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSR 249

Query: 235 ---------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                                +++D + + G +++A ++FE+M  K VVSW AM+ G+SQ
Sbjct: 250 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309

Query: 274 NGEAEKALAMF----------------------------FQMLD-------AGVRANDFT 298
            G  + AL +F                            F+ LD        G   N  T
Sbjct: 310 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVT 369

Query: 299 VVSALSACAKVGALEAGVRVHNY-------ISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           +VS LS CA  G L  G   H +       +  ND G    +  AL+DMY+KC + +AA 
Sbjct: 370 LVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 429

Query: 352 LVFG--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT-ACW 408
            +F     K++ ++TWT +I G A HG   +A++ F +M+    +PD  V     T +C 
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQML----QPDNFVMPNAFTISCA 485

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTV-VVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
                +L    F      Y +    +   + V N L  +   S     ++  F  + Q  
Sbjct: 486 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ-- 543

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            ++  S+  L   Y   GR ++  ++   MQ+  +  D
Sbjct: 544 -RNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPD 580


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 212/687 (30%), Positives = 343/687 (49%), Gaps = 89/687 (12%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + ++S++ S       + +HAQ I     ++  +   L++  +    ++ A  +F
Sbjct: 156 NPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVF 215

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHF------VFMLRLSVRPNRLTYPFVSKSVA 140
                +++  +N L+ GL  N      +  F      + ML  S      TY  V    A
Sbjct: 216 CRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTES------TYSTVINLCA 269

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           +L  L L R LH  ++K G      V   L D Y + G+   A  VF      + S++V+
Sbjct: 270 NLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVF---LLMSGSQNVV 326

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------------------- 232
            W  +I+GC + G +  A  LF  M +  VA                             
Sbjct: 327 SWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIKTN 386

Query: 233 -------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L+  + +    ++A  +F+ + +K VVSW+AM+  ++Q G+   A   F 
Sbjct: 387 YECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFI 446

Query: 286 QMLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYI---SCNDFGLKGAIGTALVDMY 341
           +M   G++ N+FT+ SA+ ACA   A ++ G + H       C+D      + +ALV MY
Sbjct: 447 KMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRCHD---ALCVSSALVSMY 503

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           A+ G+IE A  VF    ++DLL+W +M+ G A HG  ++A+  F++M   G + DG  FL
Sbjct: 504 ARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFL 563

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ---------- 451
           +++  C ++G V+    +FD M  DY I P++ H+  +V+L SR G+  +          
Sbjct: 564 SVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPF 623

Query: 452 ------------------GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                               +  + +  KLL L+P   ++YVLLSNIY+A G+WK+   V
Sbjct: 624 PAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEV 683

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R LM  + ++K+ G S+I++   VH F A    H L+++I++KL  + A  +++GY P T
Sbjct: 684 RKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDT 743

Query: 552 EWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
            +V H++ E+++EA L  HSE+LALAFGLI T P   + I K L + GD H++MK  S+I
Sbjct: 744 SFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEI 803

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
             REIV+RD  RFH+FK G CSC D+W
Sbjct: 804 EDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 165/380 (43%), Gaps = 40/380 (10%)

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
           R+ T L+       S+     +F+    +N+  +  L+ G  +       +S F  M   
Sbjct: 92  RVGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAE 151

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            V PN  T+  V   VAS  ++ LG+ +H   +K G     FV   L +MY + G    A
Sbjct: 152 GVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEA 211

Query: 184 FKVFDETPEKN---------------------------KSESVLL----WNVLINGCSKI 212
             VF     ++                           +S   +L    ++ +IN C+ +
Sbjct: 212 RVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANL 271

Query: 213 GYLRKAVELFGMMPKKNVASW----VSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAM 267
            +L  A +L   + K    S+     +L+D + + G L KA ++F  M   + VVSWTAM
Sbjct: 272 KHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAM 331

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I+G  QNG+   A A+F +M + GV  ND T  + L+    V       ++H  +   ++
Sbjct: 332 IDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEASFPPQIHAQVIKTNY 387

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                +GTAL+  Y+K  + E A  +F    +KD+++W+AM+   A  G    A   F K
Sbjct: 388 ECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIK 447

Query: 388 MMYSGTEPDGTVFLAILTAC 407
           M   G +P+     + + AC
Sbjct: 448 MTMHGLKPNEFTISSAIDAC 467



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 97/187 (51%), Gaps = 13/187 (6%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           SL+D +M    +    ++FE M ++ VV+WT+++ G+ Q G     +++FF+M   GV  
Sbjct: 96  SLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWP 155

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASL 352
           N FT  S LS  A  G ++ G  VH       FG      +  +L++MYAKCG +E A +
Sbjct: 156 NPFTFSSVLSMVASQGMVDLGQHVH--AQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARV 213

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF   + +D+++W  ++ GL ++GR  +A+Q F          D    + +LT   YS  
Sbjct: 214 VFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFH---------DSRSSITMLTESTYSTV 264

Query: 413 VKLALNF 419
           + L  N 
Sbjct: 265 INLCANL 271



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 41/84 (48%)

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +GT+LVDMY    ++     VF    +++++TWT+++ G    G     +  F +M   G
Sbjct: 93  VGTSLVDMYMNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEG 152

Query: 393 TEPDGTVFLAILTACWYSGQVKLA 416
             P+   F ++L+     G V L 
Sbjct: 153 VWPNPFTFSSVLSMVASQGMVDLG 176


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 202/625 (32%), Positives = 317/625 (50%), Gaps = 115/625 (18%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+ ++   +  + ASL+    GR +H   ++SG+  D FV   + DMY + GK   A KV
Sbjct: 362 PDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKV 421

Query: 187 F-------------------------------DETPEKNKSESVLLWNVLINGCSKIGYL 215
           F                               +   E+N    V+ W  +I G ++ G  
Sbjct: 422 FQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQG 481

Query: 216 RKAVELFGMM----PKKNVASWVSLIDGFMRKG--------------------------- 244
            +A+++F  M     + NV + VSL+   +  G                           
Sbjct: 482 CEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGAD 541

Query: 245 DLKK----------------AGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           DLK                 A ++F+ +   ++ VV+WT MI G++Q+G+A  AL +F  
Sbjct: 542 DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSG 601

Query: 287 M--LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAK 343
           M  +D  ++ NDFT+  AL ACA++ AL  G +VH Y+  N +G +   +   L+DMY+K
Sbjct: 602 MFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSK 661

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G+++ A +VF    +++ ++WT+++ G  +HGR E A++ F +M      PDG  FL +
Sbjct: 662 SGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVV 721

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------- 453
           L AC +SG V   +NFF+ M  D+ ++P  +H+  +V+L  R G+  +            
Sbjct: 722 LYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEP 781

Query: 454 ------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                             +  + +  +LL+L+  +  SY LLSNIYA   RWKDVAR+R 
Sbjct: 782 TPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRY 841

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
            M+R  IKK PG S+I+    V  F  G   H  +++I+  L D++   +  GY+P T +
Sbjct: 842 TMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQIYETLADLIQRIKAIGYVPQTSF 901

Query: 554 VLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
            LH++  EEK + L  HSEKLALA+G++   P   I+I K L ICGDCHS + Y SKI +
Sbjct: 902 ALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRITKNLRICGDCHSAITYISKIIE 961

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
            EI+LRD +RFH+FK+G+CSC+ YW
Sbjct: 962 HEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 150/566 (26%), Positives = 228/566 (40%), Gaps = 111/566 (19%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           I+ +   NS    + +H Q I+  L     + T LI +     S  YA+ + +   P   
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLF--HLATNLIGTYIASNSTAYAILLLERLPPSPS 222

Query: 95  HIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            +F  N LIR        +   + +  M  L   P+  T+PFV K+ A+LS LSLG  LH
Sbjct: 223 SVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLH 282

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             + +SG   + FV   +  MY + G  R A  +FD+   +   + ++ WN +++     
Sbjct: 283 ATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRG-IQDLVSWNSVVSAYMWA 341

Query: 213 GYLRKAVELFGMMPKK-----NVASWVSL------------------------------- 236
                A+ LF  M  +     +V S V++                               
Sbjct: 342 SDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFV 401

Query: 237 ----IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM--------- 283
               +D + + G +++A ++F++M  K VVSW AM+ G+SQ G  E AL++         
Sbjct: 402 GNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENI 461

Query: 284 --------------------------FFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
                                     F QM D G R N  T+VS LSAC  VGAL  G  
Sbjct: 462 ELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKE 521

Query: 318 VHNYISCNDFGLKGA--------IGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTA 367
            H Y       L G         +   L+DMYAKC + E A  +F     K++D++TWT 
Sbjct: 522 THCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTV 581

Query: 368 MIWGLAIHGRYEQAIQYFKKM--MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
           MI G A HG    A+Q F  M  M    +P+       L AC      +LA     ++RF
Sbjct: 582 MIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVAC-----ARLA-----ALRF 631

Query: 426 DYFIEPSVKHH------TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
              +   V  +        V N L  +   S     +Q  F  + Q   ++  S+  L  
Sbjct: 632 GRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ---RNAVSWTSLMT 688

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKD 505
            Y   GR +D  RV   M++  +  D
Sbjct: 689 GYGMHGRGEDALRVFDEMRKVPLVPD 714



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 105/257 (40%), Gaps = 42/257 (16%)

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHI--FNVLIRGLAENSHFQSCISHFVFML 121
           ++   LI   +  +S + A  +FD  +PK+  +  + V+I G A++    + +  F  M 
Sbjct: 544 KVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMF 603

Query: 122 RL--SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLG 178
           ++  S++PN  T      + A L+ L  GR +H  ++++       FV   L DMY + G
Sbjct: 604 KMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSG 663

Query: 179 KTRGAFKVFDETPEKN---------------KSESVL----------------LWNVLIN 207
               A  VFD  P++N               + E  L                 + V++ 
Sbjct: 664 DVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLY 723

Query: 208 GCSKIGYLRKAVELFGMMPKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGV 261
            CS  G +   +  F  M K          +  ++D + R G L +A +L  +MP E   
Sbjct: 724 ACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTP 783

Query: 262 VSWTAMINGFSQNGEAE 278
           V W A+++    +   E
Sbjct: 784 VVWVALLSACRLHSNVE 800


>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
           trifida]
 gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
          Length = 575

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 181/473 (38%), Positives = 275/473 (58%), Gaps = 39/473 (8%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVAS--WV--SLIDGFMRKGDLKKAGELFEQMP 257
           +  ++  CSK G+ R   ++ G++ K  V S  ++  +LI  +   G+   A ++F++MP
Sbjct: 104 YPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMP 163

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++ VVSWT++I+GF  N    +A+ +F  M++ G+  N+ TV S L ACA  GAL  G R
Sbjct: 164 DRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGER 223

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H+++   +F     + TAL+DMYAKCG I+ A  VF ET EKD+  WTA+I GLA HG 
Sbjct: 224 IHSFVKEKNFSSNANVSTALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGL 283

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
             +AI++F+ M  S  + D     A+L+A   +G V   L FF  ++  + I+P+++H+ 
Sbjct: 284 CMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEGLLFFRRLK-KHKIKPTIQHYG 342

Query: 438 VVVNLLSRVG--QDSQGY--------------------------QNSQNSFTKL--LQLK 467
            VV++L+R G  +D++ +                          + S+    +L  L + 
Sbjct: 343 CVVDMLTRAGRLKDAEEFIRKMPIEPDAVLWRTLIWGCKILGDVERSERLVRELELLNMD 402

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--H 525
            +   SYVLL N+YAA G+W++ A+ R LM +R + K P  S IE++G VH F AG   H
Sbjct: 403 SRDTGSYVLLENVYAATGKWEEKAKTRELMYQRGLMKPPACSRIEIDGVVHEFTAGDSRH 462

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTP 584
             A  ++ KLED+    R +GY P    VL  I + EK   L  HSEKLA++FGL++++P
Sbjct: 463 DEATAVYEKLEDVEERLRGEGYNPIVSEVLLEIDDDEKASQLLHHSEKLAVSFGLVKSSP 522

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G+ I+IVK L  C DCHS MK  SK+ QR+I++RD  RFH+F  G CSC D W
Sbjct: 523 GSVIRIVKNLRSCEDCHSFMKLISKVYQRDIIVRDRIRFHHFSGGNCSCGDRW 575



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 171/396 (43%), Gaps = 54/396 (13%)

Query: 43  STKQLRQIHAQIILHNLFASSRITT--QLISSASLHKS--IDYALSIFDHFTPKNLHIFN 98
           S  Q  Q+HA+I+    + S+      +L + ++L  S  ++YA  I       N   +N
Sbjct: 5   SMTQAMQLHARILKSGAYDSNHGQDFHKLFTFSALSPSGDLNYARHILRTLHTPNSFYYN 64

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLS------VRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            +IR  ++++      + F++M           RP+  TYPFV K+ +       G+ +H
Sbjct: 65  TMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQIH 124

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING---- 208
            L+ KSGV  D ++   L  +Y   G+   A+KVFD+ P+++    V+ W  +I+G    
Sbjct: 125 GLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKMPDRD----VVSWTSIIDGFVDN 180

Query: 209 -------------------------------CSKIGYLRKAVELFGMMPKKNVAS----W 233
                                          C+  G L     +   + +KN +S     
Sbjct: 181 DRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVS 240

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +LID + + G +  A E+F++  EK V  WTA+I G + +G   KA+  F  M  + V+
Sbjct: 241 TALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVK 300

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASL 352
            ++  + + LSA    G +  G+     +  +           +VDM  + G + +A   
Sbjct: 301 MDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCVVDMLTRAGRLKDAEEF 360

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           +     E D + W  +IWG  I G  E++ +  +++
Sbjct: 361 IRKMPIEPDAVLWRTLIWGCKILGDVERSERLVREL 396



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML---DAGV---RANDF 297
           GDL  A  +   +       +  MI  +S + +  +A  +F  M    DA V   R + F
Sbjct: 43  GDLNYARHILRTLHTPNSFYYNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHF 102

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T    L AC+K G    G ++H  +  +  G    I  AL+ +Y+  G    A  VF + 
Sbjct: 103 TYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAYKVFDKM 162

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
            ++D+++WT++I G   + R  +AI+ F  M+ +G EP+     ++L AC  +G +
Sbjct: 163 PDRDVVSWTSIIDGFVDNDRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGAL 218



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 58/270 (21%), Positives = 119/270 (44%), Gaps = 18/270 (6%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           +R   AI   T++  +    N +T   ++     + +     +IH+ +   N  +++ ++
Sbjct: 181 DRPIEAIRLFTHMIENGIEPNEVTVASVLRACADTGALNTGERIHSFVKEKNFSSNANVS 240

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T LI   +    ID AL +FD    K+++++  +I GLA +      I  F  M +  V+
Sbjct: 241 TALIDMYAKCGCIDGALEVFDETLEKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVK 300

Query: 127 PNRLTYPFVSKSVASLSLLSLG----RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
            +      V  +  +  L+S G    R L    +K  +++   V     DM  + G+ + 
Sbjct: 301 MDERAITAVLSAYRNAGLVSEGLLFFRRLKKHKIKPTIQHYGCV----VDMLTRAGRLKD 356

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA------VELFGMMPKKNVASWVSL 236
           A +   + P +  +   +LW  LI GC  +G + ++      +EL   M  ++  S+V L
Sbjct: 357 AEEFIRKMPIEPDA---VLWRTLIWGCKILGDVERSERLVRELELLN-MDSRDTGSYVLL 412

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
            + +   G  ++  +  E M ++G++   A
Sbjct: 413 ENVYAATGKWEEKAKTRELMYQRGLMKPPA 442


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  325 bits (832), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 200/579 (34%), Positives = 304/579 (52%), Gaps = 67/579 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    K++  ++ LI    +N  ++  I  FV M ++ V  + +       + A+
Sbjct: 329 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 388

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L ++++G+ +H L +K G E    ++  L  MY + G    A K+FDE            
Sbjct: 389 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE------------ 436

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                       YL             ++ SW S+I G+++   +  A  +F+ MPEK V
Sbjct: 437 -----------AYLL------------DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 473

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW++MI+G++QN   ++ LA+F +M  +G + ++ T+VS +SACA++ ALE G  VH Y
Sbjct: 474 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 533

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  N   +   +GT L+DMY KCG +E A  VF    EK + TW A+I GLA++G  E +
Sbjct: 534 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 593

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F  M      P+   F+ +L AC + G V    + F SM  D+ I+P+VKH+  +V+
Sbjct: 594 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVD 653

Query: 442 LLSRVG--QDSQGYQN--------------------------SQNSFTKLLQLKPKHPSS 473
           LL R G  Q+++   N                           +    KL++L+P H   
Sbjct: 654 LLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGF 713

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEI 531
           +VLLSNIYA++G+W DV  +R +M +  + K PG S IE NG +H F AG   H     I
Sbjct: 714 HVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAI 773

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
              L ++    + +GY P    VL ++ +EEKE  L  HSEKLA+AFGLI  +P T I+I
Sbjct: 774 EDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRI 833

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           +K L IC DCH+  K  SK   R+IV+RD  RFH+F+ G
Sbjct: 834 MKNLRICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 169/347 (48%), Gaps = 56/347 (16%)

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRL-----TYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +  ++ Q+   HF F L  S+  N L     TYP + ++ +        + +H  ++K G
Sbjct: 184 SRRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLG 243

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
            + D +VR  L + +        A +VF+E+   +       WN ++ G  +IG + +A 
Sbjct: 244 FDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS----WNSILAGYIEIGNVEEAK 299

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
            ++  MP++++ +  S+I  F  +G + +A +LF++M EK +V+W+A+I  F QN   E+
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT---- 335
           A+  F  M   GV  ++   VSALSACA +  +  G  +H+        L   IGT    
Sbjct: 360 AIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHS--------LSLKIGTESYI 411

Query: 336 ----ALVDMYAKCGNIEAASLVFGET-------------------------------KEK 360
               AL+ MY+KCG+I  A  +F E                                 EK
Sbjct: 412 NLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEK 471

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           D+++W++MI G A +  +++ +  F++M  SG +PD T  +++++AC
Sbjct: 472 DVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISAC 518



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A +IFD    K++  ++ +I G A+N  F   ++ F  M     +P+  T   V  +
Sbjct: 458 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 517

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L+ L  G+ +H  I ++G+  +  +   L DMY++ G    A +VF    EK  S  
Sbjct: 518 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST- 576

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK------------------------------- 227
              WN LI G +  G +  ++++F  M K                               
Sbjct: 577 ---WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFY 633

Query: 228 ---------KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
                     NV  +  ++D   R G L++A EL  +MP    V +W A++    ++G++
Sbjct: 634 SMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 693

Query: 278 E 278
           E
Sbjct: 694 E 694



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 7/187 (3%)

Query: 31  ETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           ET ++S+I +      L Q   +HA I  + L  +  + T LI        ++ AL +F 
Sbjct: 508 ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFY 567

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               K +  +N LI GLA N   +S +  F  M +  V PN +T+  V  +   + L+  
Sbjct: 568 GMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDE 627

Query: 148 GR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           G+   + +I    ++ +      + D+  + GK + A ++ +  P    +  V  W  L+
Sbjct: 628 GQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP---MTPDVATWGALL 684

Query: 207 NGCSKIG 213
             C K G
Sbjct: 685 GACKKHG 691


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 203/696 (29%), Positives = 349/696 (50%), Gaps = 98/696 (14%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F     AI     + S   P +  T ++++S   ++ +    R+IH+ ++   L +   +
Sbjct: 120 FGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPV 179

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF-------- 117
            T L++  +       A  +FD  T KN+  +N LI    ++  F+   S F        
Sbjct: 180 ATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI 239

Query: 118 ---------------------VFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
                                +F   L   S++P+  T   +  + A+L  L++G+ +H 
Sbjct: 240 VSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            I+++  E    V   L  MY + G    A  +     E N++ ++              
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIV----EHNRTSNL-------------- 341

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                          N+ ++ SL+DG+ + G++K A E+F ++ ++ VV+WTAMI G+ Q
Sbjct: 342 ---------------NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           NG    AL +F  M++ G   N +T+ + LS  + +  LE G ++H            ++
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 334 GTALVDMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
             AL+ MYAK GNI  A  VF     +K++++WT+MI  LA HG  ++AI  F++M+  G
Sbjct: 447 TNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +PD   ++ +L+AC + G V+    +++ M   + IEP++ H+  +++L  R G   + 
Sbjct: 507 MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 453 Y----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y                              ++ +  +LL + P +  +Y+ L+N+Y+A 
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGA 542
           G+W++ A+ R LM+ R ++K+ G S+I +   VH F  E   H    EI+  + +I    
Sbjct: 627 GKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEI 686

Query: 543 REQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           ++ G++P TE VLH+++EE KE+ L  HSEKLA+AFGL+ T   T ++I+K L +C DCH
Sbjct: 687 KKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCH 746

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           S +K+ SK+  REI++RD TRFH+FKDG+CSCRDYW
Sbjct: 747 SAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 112/423 (26%), Positives = 176/423 (41%), Gaps = 100/423 (23%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H QII   L     +   L++  +   S+ +A  +FD    K+   +N LI G A+ 
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQ 89

Query: 108 SHFQ-------------------------------SCISHFVFMLRLSVRPNRLTYPFVS 136
            +F+                               + I  F  M+   V P++ T   V 
Sbjct: 90  GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            S A+   L +GR +H  +VK G+     V   L +MY + G    A  VFD    KN S
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                WN LI+   + G    A   F  MP +++ SW S+I                   
Sbjct: 210 T----WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMI------------------- 246

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAG 315
                       +G+SQ G   +ALA+F +ML +  ++ ++FT+ S LSACA +  L  G
Sbjct: 247 ------------SGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG 294

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL----------------------- 352
            ++H YI   +    GA+G AL+ MYAK G +E A L                       
Sbjct: 295 KQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYT 354

Query: 353 ----------VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
                     +F + +++D++ WTAMI G   +G +  A++ F+ M+  G EP+     A
Sbjct: 355 KLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAA 414

Query: 403 ILT 405
           +L+
Sbjct: 415 MLS 417



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 35/241 (14%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +HC I+K G+        HL                            V L N L+ 
Sbjct: 29  GRSVHCQIIKKGL--------HLG---------------------------VYLMNNLMT 53

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
             +K G LR A  +F  MP K+  SW +LI G+ ++G+ + +  L  +MP+   VSWTA+
Sbjct: 54  FYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAI 113

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G++Q G  + A+ MF +M+   V  + FTV + LS+CA    L+ G ++H+++     
Sbjct: 114 IVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGL 173

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
           G    + T+L++MYAKCG+   A +VF     K++ TW A+I      G++E A   F+K
Sbjct: 174 GSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233

Query: 388 M 388
           M
Sbjct: 234 M 234



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKC 344
           Q++  G+    + + + ++  AK G+L     V +     +  LK       L+  YAK 
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFD-----EMPLKSTFSWNTLISGYAKQ 89

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           GN E +  +  E  + D ++WTA+I G    G ++ AI  F KM+     P       +L
Sbjct: 90  GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 405 TAC 407
           ++C
Sbjct: 150 SSC 152


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 197/656 (30%), Positives = 331/656 (50%), Gaps = 74/656 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K   KP N+ T  ++IS   +     + R+IHA+I+ +       + T LI+      S
Sbjct: 199 MKCDVKP-NSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVVATALINMYGKCGS 257

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
              A  +FD    +++  +NV+I     N  F   +  +  +     +  + T+  +  +
Sbjct: 258 SHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGFKRTKATFVSILGA 317

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            +S+  L+ GR +H  I++ G++ +  V   L +MY                        
Sbjct: 318 CSSVKALAQGRLVHSHILERGLDSEVAVATALVNMY------------------------ 353

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG---DLKKAGELFEQ 255
                      +K G L +A ++F  M  ++  +W +LI  +   G   D +KA ++F++
Sbjct: 354 -----------AKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEA 314
           +  +  +SW AMI  + QNG A  A+ +F +M  A G++ +  T ++ L ACA +G L  
Sbjct: 403 LGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
              +H  IS ++      +   L++MYA+CG++E A  +F   KEK +++WTAM+   + 
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           +GRY +A+  F++M   G +PD   + +IL  C + G ++    +F  M   + + P+  
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTAD 582

Query: 435 HHTVVVNLLSRVGQ--DSQGYQNS--------------------------QNSFTKLLQL 466
           H   +V+LL R G+  D++    S                          + +  ++ +L
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-- 524
            P   + Y+ +SNIYAA G W+ VA VR  M+ R +KK PG S+IEV+G +H F +GG  
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTT 583
           H    EI  +L  +    R  GY+P T+ VLH++ E EKE  L  HSEK+A+AFGL+ + 
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 584 -PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF-KDGTCSCRDYW 636
             G  I++VK L +C DCH+  K+ ++I+ R+I++RD  RFH F  DG CSC DYW
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 127/557 (22%), Positives = 234/557 (42%), Gaps = 90/557 (16%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +  +N+T   ++    S     + R +H +I        + +   LIS      S+  A 
Sbjct: 3   RQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDAR 62

Query: 84  SIFD--HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           S+F+   +  +N+  +N +I   A+N H    +  +  M    +  + +T+  V   + +
Sbjct: 63  SVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSV---LGA 119

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            S L+ GR +H  +  SG++    +   L  MY + G    A ++F     ++++     
Sbjct: 120 CSSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETS---- 175

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFM--------RK------- 243
           WN +I   S+ G    A+ +F  M    K N  +++++I GF         RK       
Sbjct: 176 WNAVILAHSQSGDWSGALRIFKEMKCDVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVA 235

Query: 244 --------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                               G   +A E+F++M ++ +VSW  MI  +  NG+  +AL +
Sbjct: 236 NGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALEL 295

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           + ++   G +    T VS L AC+ V AL  G  VH++I       + A+ TALV+MYAK
Sbjct: 296 YQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAK 355

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG--------------------------- 376
           CG++E A  VF   K +D + W+ +I   A +G                           
Sbjct: 356 CGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMI 415

Query: 377 -RYEQ------AIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
             Y Q      A++ F++M   +G +PD   F+A+L AC   G++   +    +   +  
Sbjct: 416 TTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLS-EVKALHAQISESE 474

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
           +E +V     ++N+ +R G      + ++  F      K K   S+  +   ++  GR+ 
Sbjct: 475 LESNVVVTNTLINMYARCGS----LEEAERLFA---AAKEKTVVSWTAMVAAFSQYGRYA 527

Query: 489 DVARVRTLMQRRSIKKD 505
           +   +   M    +K D
Sbjct: 528 EALDLFQEMDLEGVKPD 544


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 203/696 (29%), Positives = 349/696 (50%), Gaps = 98/696 (14%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F     AI     + S   P +  T ++++S   ++ +    R+IH+ ++   L +   +
Sbjct: 120 FGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPV 179

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF-------- 117
            T L++  +       A  +FD  T KN+  +N LI    ++  F+   S F        
Sbjct: 180 ATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI 239

Query: 118 ---------------------VFMLRL---SVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
                                +F   L   S++P+  T   +  + A+L  L++G+ +H 
Sbjct: 240 VSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            I+++  E    V   L  MY + G    A  +     E N++ ++              
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIV----EHNRTSNL-------------- 341

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                          N+ ++ SL+DG+ + G++K A E+F ++ ++ VV+WTAMI G+ Q
Sbjct: 342 ---------------NIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQ 386

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           NG    AL +F  M++ G   N +T+ + LS  + +  LE G ++H            ++
Sbjct: 387 NGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSV 446

Query: 334 GTALVDMYAKCGNIEAASLVFG-ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
             AL+ MYAK GNI  A  VF     +K++++WT+MI  LA HG  ++AI  F++M+  G
Sbjct: 447 TNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVG 506

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +PD   ++ +L+AC + G V+    +++ M   + IEP++ H+  +++L  R G   + 
Sbjct: 507 MKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEA 566

Query: 453 Y----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y                              ++ +  +LL + P +  +Y+ L+N+Y+A 
Sbjct: 567 YLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSAC 626

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGA 542
           G+W++ A+ R LM+ R ++K+ G S+I +   VH F  E   H    EI+  + +I    
Sbjct: 627 GKWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEI 686

Query: 543 REQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           ++ G++P TE VLH+++EE KE+ L  HSEKLA+AFGL+ T   T ++I+K L +C DCH
Sbjct: 687 KKMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCH 746

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           S +K+ SK+  REI++RD TRFH+FKDG+CSCRDYW
Sbjct: 747 SAIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 111/423 (26%), Positives = 175/423 (41%), Gaps = 100/423 (23%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H QII   L     +   L++  +   S+ +A  +FD    K+   +N LI G A+ 
Sbjct: 30  RSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQ 89

Query: 108 SHFQ-------------------------------SCISHFVFMLRLSVRPNRLTYPFVS 136
            +F+                               + I  F  M+   V P++ T   V 
Sbjct: 90  GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            S A+   L +GR +H  +VK G+     V   L +MY + G    A  VFD    KN S
Sbjct: 150 SSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNIS 209

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                WN LI+   + G    A   F  MP +++ SW S+I                   
Sbjct: 210 T----WNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMI------------------- 246

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAG 315
                       +G+SQ G   +AL +F +ML +  ++ ++FT+ S LSACA +  L  G
Sbjct: 247 ------------SGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIG 294

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL----------------------- 352
            ++H YI   +    GA+G AL+ MYAK G +E A L                       
Sbjct: 295 KQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYT 354

Query: 353 ----------VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
                     +F + +++D++ WTAMI G   +G +  A++ F+ M+  G EP+     A
Sbjct: 355 KLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAA 414

Query: 403 ILT 405
           +L+
Sbjct: 415 MLS 417



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/241 (32%), Positives = 122/241 (50%), Gaps = 35/241 (14%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +HC I+K G+        HL                            V L N L+ 
Sbjct: 29  GRSVHCQIIKKGL--------HLG---------------------------VYLMNNLMT 53

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
             +K G LR A  +F  MP K+  SW +LI G+ ++G+ + +  L  +MP+   VSWTA+
Sbjct: 54  FYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAI 113

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G++Q G  + A+ MF +M+   V  + FTV + LS+CA    L+ G ++H+++     
Sbjct: 114 IVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGL 173

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
           G    + T+L++MYAKCG+   A +VF     K++ TW A+I      G++E A   F+K
Sbjct: 174 GSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEK 233

Query: 388 M 388
           M
Sbjct: 234 M 234



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKC 344
           Q++  G+    + + + ++  AK G+L     V +     +  LK       L+  YAK 
Sbjct: 35  QIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFD-----EMPLKSTFSWNTLISGYAKQ 89

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           GN E +  +  E  + D ++WTA+I G    G ++ AI  F KM+     P       +L
Sbjct: 90  GNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVL 149

Query: 405 TAC 407
           ++C
Sbjct: 150 SSC 152


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  324 bits (831), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 211/684 (30%), Positives = 343/684 (50%), Gaps = 81/684 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSI 85
           N +  T ++    S  + ++ + IH++I     L     +   L++  +   S++ A  +
Sbjct: 120 NPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRL 179

Query: 86  FDHFT-PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           F+  +  +++  +N +I   A++ HF+  I  +  M    V P+  T+  V  + ++L L
Sbjct: 180 FERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNLGL 236

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  GR +H LI   G E D  ++  L  MY +      A K+F   P ++    V+ W+ 
Sbjct: 237 LDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRD----VVSWSA 292

Query: 205 LING-----------------------------------CSKIGYLR--KAV--ELFGMM 225
           +I                                     C+ +G LR  +AV  ++ G  
Sbjct: 293 MIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNG 352

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
            K  + +  +L+D +   G L +A  LF+Q+  +    WT +I G+S+ G     L ++ 
Sbjct: 353 YKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYR 412

Query: 286 QMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
           +M +   V A        +SACA +GA     + H+ I  +       + T+LV+MY++ 
Sbjct: 413 EMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRW 472

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           GN+E+A  VF +   +D L WT +I G A HG +  A+  +K+M   G EP    F+ +L
Sbjct: 473 GNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 532

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNSQ----N 458
            AC ++G  +     F S++ DY + P++ H++ +++LLSR G+  D++   N+     N
Sbjct: 533 YACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPN 592

Query: 459 SFT----------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
             T                      ++ +L P  P+SYVLLSN++A  G    +A VR  
Sbjct: 593 DVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNT 652

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           M  R +KK  G S+IEV   +H F  G   H   +EI ++L+ +    +E GY+P +E V
Sbjct: 653 MVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEV 712

Query: 555 LHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           LH++ E EKE  L  HSEKLA+AFGLI T PGTT++I   L IC DCHS +K+ S I++R
Sbjct: 713 LHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARR 772

Query: 614 EIVLRD-TRFHYFKDGTCSCRDYW 636
           EI++RD +RFH F+DG CSC DYW
Sbjct: 773 EIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 208/456 (45%), Gaps = 52/456 (11%)

Query: 33  HIISLIHSSNSTKQLRQIHAQI---ILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           H    +      + +RQIH +I      N+F    +  +++ +     S+  A   FD  
Sbjct: 29  HYRDALRQCQDLESVRQIHDRISGAASANVF----LGNEIVRAYGKCGSVASARVAFDAI 84

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             KN + +  ++   A+N H+++ +  +    R+ ++PN + Y  V  + AS+  L  G+
Sbjct: 85  ARKNDYSWGSMLTAYAQNGHYRAALDLYK---RMDLQPNPVVYTTVLGACASIEALEEGK 141

Query: 150 GLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
            +H  I  + G++ D  +   L  MY + G    A ++F+    +    SV  WN +I  
Sbjct: 142 AIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRR---SVSSWNAMIAA 198

Query: 209 CSKIGYLRKAVELFGMMP-KKNVASWVSLID-----GFMRKGD----------------- 245
            ++ G+  +A+ L+  M  + +V ++ S++      G + +G                  
Sbjct: 199 YAQSGHFEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSL 258

Query: 246 -------------LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
                        L  A ++F+++P + VVSW+AMI  F++    ++A+  + +M   GV
Sbjct: 259 QNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGV 318

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           R N +T  S L ACA VG L AG  VH+ I  N + +    GTALVD+Y   G+++ A  
Sbjct: 319 RPNYYTFASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARS 378

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG 411
           +F + + +D   WT +I G +  G     ++ +++M  +   P    ++  +++AC   G
Sbjct: 379 LFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLG 438

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
               A      +  D  I   V   T +VN+ SR G
Sbjct: 439 AFADARQAHSDIEADGMISDFVL-ATSLVNMYSRWG 473



 Score = 39.3 bits (90), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 35/226 (15%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P+  I  + +IS   S  +    RQ H+ I    + +   + T L++  S   +++ A  
Sbjct: 421 PATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQ 480

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD  + ++   +  LI G A++      +  +  M      P+ LT+  V  + +   L
Sbjct: 481 VFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGL 540

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
              G+ L        ++ D  +  ++A                              ++ 
Sbjct: 541 QEQGKQLFI-----SIQSDYAMHPNIAH-----------------------------YSC 566

Query: 205 LINGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKA 249
           +I+  S+ G L  A EL   MP + N  +W SL+       D+K+A
Sbjct: 567 IIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRA 612


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 213/668 (31%), Positives = 338/668 (50%), Gaps = 81/668 (12%)

Query: 45  KQLRQIHAQIILHNLF-ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           ++ RQ+H   I   L  A   +   LI+  +    ID+A S+F     K+   +N +I G
Sbjct: 119 RKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITG 178

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           L +N  F+  +  +  M +  + P+         S ASL  + LG+  H   +K G++ D
Sbjct: 179 LDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMD 238

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY-LRKAVELF 222
             V   L  +Y +  +     KVF    E+++    + WN +I   +  G  + +A+E+F
Sbjct: 239 VSVSNTLLALYAETSRLAECQKVFSWMLERDQ----VSWNTVIGALADSGASVSEAIEVF 294

Query: 223 ------GMMPKK----NVASWVS-----------------------------LIDGFMRK 243
                 G  P +    N+ + VS                             L+  + + 
Sbjct: 295 LEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKS 354

Query: 244 GDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
           G+++   E+F +M E+   VSW +MI+G+  N    KA+ + + M+  G R + FT  + 
Sbjct: 355 GEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATV 414

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LSACA V  LE G+ VH             IG+ALVDMY+KCG I+ AS  F     ++L
Sbjct: 415 LSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNL 474

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
            +W +MI G A HG  + A++ F +M  SG  PD   F+ +L+AC + G V     +F S
Sbjct: 475 YSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKS 534

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQ------------------------------DSQG 452
           M   Y + P V+H++ +V+LL R G+                              + + 
Sbjct: 535 MTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRK 594

Query: 453 YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
            +  + +   L  + P++  +YVLLSN+YA+ G+W+D+AR R  M+  ++KK+ G S++ 
Sbjct: 595 TELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVT 654

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCH 569
           +   VH F AG   H     I++KL+++    R+ GY+P  ++ L++++ E KEE L  H
Sbjct: 655 MKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYH 714

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEKLA+AF L + + G  I+I+K L +CGDCHS  KY SK+  R IVLRD+ RFH+F+DG
Sbjct: 715 SEKLAVAFVLTRNS-GLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDG 773

Query: 629 TCSCRDYW 636
            CSCRDYW
Sbjct: 774 KCSCRDYW 781



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/186 (34%), Positives = 105/186 (56%), Gaps = 6/186 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI+ ++R GD   A +LF++MP++  V+W  +I+G++QNG  E A  +  +M+  G   
Sbjct: 40  TLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMIFEGFLP 99

Query: 295 NDFTVVSALSACAK-VGALEAGVRVHNY---ISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           N F   SA+ AC + +     G +VH Y      ND   K A+G  L++MYAKCG+I+ A
Sbjct: 100 NRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLND--AKVAVGNGLINMYAKCGDIDHA 157

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VFG   +KD ++W +MI GL  +  +E A++ +  M  +G  P     ++ L++C   
Sbjct: 158 RSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASL 217

Query: 411 GQVKLA 416
           G + L 
Sbjct: 218 GCILLG 223



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 131/297 (44%), Gaps = 46/297 (15%)

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
            H  ++K G + D F+   L ++YV++G    A K+FDE P++N     + W  LI+G +
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNG----VTWACLISGYT 77

Query: 211 KIGYLRKAVELF------GMMPKK-----------------------------------N 229
           + G    A  +       G +P +                                    
Sbjct: 78  QNGMPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAK 137

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           VA    LI+ + + GD+  A  +F  M +K  VSW +MI G  QN   E A+  +  M  
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G+  ++F ++SALS+CA +G +  G + H         +  ++   L+ +YA+   +  
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHG-RYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
              VF    E+D ++W  +I  LA  G    +AI+ F +MM +G  P+   F+ +L 
Sbjct: 258 CQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLA 314


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 196/576 (34%), Positives = 306/576 (53%), Gaps = 38/576 (6%)

Query: 17  TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
           T + +  K  N+  +T  +S + S  ST+ L++IHAQ+I+      + I T+ + S ++ 
Sbjct: 15  TTVTTKFKSKNSNYKT--LSALQSCKSTEDLKKIHAQLIITGQIKDTFIATKTVESYAVS 72

Query: 77  -KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
            ++IDYA  +F      + + +  +IRG  E  + +  +  +  M +  V  N+ T+ FV
Sbjct: 73  ARNIDYAFWVFVGINYPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFV 132

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
            K+         GR +H  +VK G  YD F R  L  MY++ G    A  +FDE P  N 
Sbjct: 133 LKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHN- 191

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
              V+ WN +I GC   G   +A  LFG MP++NV SW +++ G+ + G +  A  LF+ 
Sbjct: 192 ---VVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIARSLFDL 248

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MPE+ VVSW +MI+ + QNG A +AL +F +M+ AGV A+   + S LSACA++GAL+ G
Sbjct: 249 MPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSIIITSILSACAQIGALDMG 308

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             +H Y+  +       + TALVDMYAKCG I+ A  VF     K+L +W AM+ GLAIH
Sbjct: 309 RWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMPRKNLCSWNAMLSGLAIH 368

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G    A++ FK+M  +G  P+   F+A+L+AC + G V+     F+ M  ++ I P V+H
Sbjct: 369 GHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKEFNITPKVEH 428

Query: 436 HTVVVNLLSRVGQDSQ---------------------------GYQNSQNSFTKLLQ-LK 467
           +  +V++L R G  ++                           GY N        +Q L 
Sbjct: 429 YGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVHGYTNVGEDVVGYIQKLV 488

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI-KKDPGWSYIEVNGHVHRFEAGG-- 524
            +    YVLLSNI+AA+ +W +V + R +M++  + KK PG+S IE++  VH F A    
Sbjct: 489 SEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYSSIELDSVVHDFFAEDRL 548

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           H   +E+ + +E +      +GY      VL+NI E
Sbjct: 549 HSKWREVSTVIERLNTHLEVKGYEANPSLVLYNIDE 584


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 297/589 (50%), Gaps = 87/589 (14%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           S+ P R  Y  +      L  L  GR +H  I  S  E D  +   + +MY + G    A
Sbjct: 100 SLEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEA 159

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK--------- 228
             +FD+ P K+    ++ W VLI+G S+ G   +A+ LF      G  P +         
Sbjct: 160 QDLFDKMPTKD----MVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKA 215

Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                   NV    SL+D + R   +++A  +F  +  K VVSW
Sbjct: 216 SGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSW 275

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A+I G ++ GE E  + +F QML  G     FT  S L ACA  G+LE G  VH ++  
Sbjct: 276 NALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIK 334

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +       IG  L+DMYAK G+I+ A  VF    ++D+++W ++I G A HG   +A+Q 
Sbjct: 335 SGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQL 394

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F++M+ +  +P+   FL++LTAC +SG +     +F+ M+  + IE  V HH  VV+LL 
Sbjct: 395 FEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMK-KHKIEAQVAHHVTVVDLLG 453

Query: 445 RVGQDSQGYQNSQNSFT---------------------------------KLLQLKPKHP 471
           R G+      N  N F                                  ++ +L P   
Sbjct: 454 RAGR-----LNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDS 508

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             +VLLSNIYA+ GR  D A+VR +M+   +KK+P  S++E+   VH F A    H + +
Sbjct: 509 GPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMRE 568

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           EI    E I    +E GY+P T  VL  + ++++E  L  HSEKLALAF +++T PG TI
Sbjct: 569 EIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTI 628

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I K + ICGDCHS  K+AS++  REI++RDT RFH+F  G CSCRDYW
Sbjct: 629 RIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 160/365 (43%), Gaps = 46/365 (12%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           KQ R IHA I          +   +++  +   S++ A  +FD    K++  + VLI G 
Sbjct: 122 KQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGY 181

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           +++      ++ F  ML L  +PN  T   + K+  +      GR LH   +K G + + 
Sbjct: 182 SQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNV 241

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            V   L DMY +    R A  +F+    KN    V+ WN LI G ++ G     + LF  
Sbjct: 242 HVGSSLLDMYARWAHMREAKVIFNSLAAKN----VVSWNALIAGHARKGEGEHVMRLFXQ 297

Query: 225 MPKKNV---------------------ASWV-----------------SLIDGFMRKGDL 246
           M ++                         WV                 +LID + + G +
Sbjct: 298 MLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSI 357

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           K A ++F ++ ++ +VSW ++I+G++Q+G   +AL +F QML A V+ N+ T +S L+AC
Sbjct: 358 KDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTAC 417

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           +  G L+ G      +  +    + A    +VD+  + G +  A+    E   K     T
Sbjct: 418 SHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKP----T 473

Query: 367 AMIWG 371
           A +WG
Sbjct: 474 AAVWG 478



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 146/352 (41%), Gaps = 17/352 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T + ++    +  S    RQ+HA  + +    +  + + L+   +    +  A  IF
Sbjct: 205 NEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIF 264

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    KN+  +N LI G A     +  +  F  MLR    P   TY  V    +S S L 
Sbjct: 265 NSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGS-LE 323

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  ++KSG +  A++   L DMY + G  + A KVF    +++    ++ WN +I
Sbjct: 324 QGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQD----IVSWNSII 379

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP----E 258
           +G ++ G   +A++LF  M K  V     +++S++      G L +    FE M     E
Sbjct: 380 SGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIE 439

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
             V     +++   + G   +A     +M    ++       + L AC     ++ GV  
Sbjct: 440 AQVAHHVTVVDLLGRAGRLNEANKFIEEM---PIKPTAAVWGALLGACRMHKNMDLGVYA 496

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
              I   D    G     L ++YA  G +  A+ V    KE  +    A  W
Sbjct: 497 AEQIFELDPHDSGP-HVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSW 547



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 15/240 (6%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           SS S +Q + +HA +I       + I   LI   +   SI  A  +F     +++  +N 
Sbjct: 318 SSGSLEQGKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNS 377

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +I G A++      +  F  ML+  V+PN +T+  V  + +   LL  G+    L+ K  
Sbjct: 378 IISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHK 437

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS-----KIGY 214
           +E      V + D+  + G+   A K  +E P K    +  +W  L+  C       +G 
Sbjct: 438 IEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIK---PTAAVWGALLGACRMHKNMDLG- 493

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
           +  A ++F + P  +    V L + +   G L  A ++ + M E GV      SW  + N
Sbjct: 494 VYAAEQIFELDPHDS-GPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIEN 552


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 213/676 (31%), Positives = 342/676 (50%), Gaps = 78/676 (11%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFT- 90
           H+++      S K   QIH+Q++  N  AS + I T L+  A    SI + L +F+ +  
Sbjct: 102 HLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKC-GSIHHTLLLFNTYPH 160

Query: 91  -PKNLHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              N+  +  LI  L+  N  FQ+ ++ F  M    + PN  T+  +  + A  +LLS G
Sbjct: 161 PSTNVVTWTTLINQLSRSNKPFQA-LTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + +H LI K     D FV   L DMY + G    A  VFDE P +N    ++ WN +I G
Sbjct: 220 QQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRN----LVSWNSMIVG 275

Query: 209 CSK-------IGYLRKAVEL--------------------------FGMMPKKNVASWV- 234
             K       IG  R+ + L                           G + K+ +   V 
Sbjct: 276 FVKNKLYGRAIGVFREVLSLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVY 335

Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              SL+D + + G  + A +LF    ++ VV+W  MI G  +    E+A   F  M+  G
Sbjct: 336 VKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREG 395

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           V  ++ +  S   A A + AL  G  +H+++          I ++LV MY KCG++  A 
Sbjct: 396 VEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAY 455

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF ETKE +++ WTAMI     HG   +AI+ F++M+  G  P+   F+++L+AC ++G
Sbjct: 456 QVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTG 515

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------- 452
           ++     +F+SM   + I+P ++H+  +V+LL RVG+  +                    
Sbjct: 516 KIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGAL 575

Query: 453 ---------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                     +  +    +L +L+P +P +Y+LLSNIY   G  ++   VR LM    ++
Sbjct: 576 LGACGKHANVEMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVR 635

Query: 504 KDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K+ G S+I+V      F A    H   +EI+  L+ +    + +GY+  T++  ++++  
Sbjct: 636 KESGCSWIDVKNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGS 695

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           +E++L CHSEKLALAFGL+   PG+ ++I K L  CGDCH++MK+AS+I QREI++RD  
Sbjct: 696 EEQSLWCHSEKLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDIN 755

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH F +G+CSC DYW
Sbjct: 756 RFHRFTNGSCSCMDYW 771



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 188/434 (43%), Gaps = 63/434 (14%)

Query: 6   FNRL-TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR 64
           FNR+ TT I P           N+ T + I+     +    + +QIHA I  H       
Sbjct: 188 FNRMRTTGIYP-----------NHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPF 236

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T L+   +   S+  A ++FD    +NL  +N +I G  +N  +   I   VF   LS
Sbjct: 237 VATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIG--VFREVLS 294

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + P++++   V  + A L  L  G+ +H  IVK G+    +V+  L DMY + G    A 
Sbjct: 295 LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDAT 354

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------------- 230
           K+F    +++    V+ WNV+I GC +     +A   F  M ++ V              
Sbjct: 355 KLFCGGGDRD----VVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHAS 410

Query: 231 ASWVSLIDGFM-------------------------RKGDLKKAGELFEQMPEKGVVSWT 265
           AS  +L  G M                         + G +  A ++F +  E  VV WT
Sbjct: 411 ASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWT 470

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI  F Q+G A +A+ +F +ML+ GV     T VS LSAC+  G ++ G +  N ++ N
Sbjct: 471 AMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMA-N 529

Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              +K  +     +VD+  + G + EA   +     E D L W A++     H   E   
Sbjct: 530 VHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGR 589

Query: 383 QYFKKMMYSGTEPD 396
           +  +++     EPD
Sbjct: 590 EVAERLF--KLEPD 601



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 10/231 (4%)

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN----VASWVSLIDGFMRKGDL 246
           P+ ++  SV     L+N  +K+  L+ A ++   +   N    +A+  +L+  + + G +
Sbjct: 89  PKFHQFSSVPDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSI 148

Query: 247 KKAGELFEQMPEK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
                LF   P     VV+WT +IN  S++ +  +AL  F +M   G+  N FT  + L 
Sbjct: 149 HHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILP 208

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA    L  G ++H  I  + F     + TAL+DMYAKCG++  A  VF E   ++L++
Sbjct: 209 ACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVS 268

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           W +MI G   +  Y +AI  F++++  G  PD     ++L+AC  +G V+L
Sbjct: 269 WNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSAC--AGLVEL 315


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 189/514 (36%), Positives = 293/514 (57%), Gaps = 39/514 (7%)

Query: 162 YDAFVRVHLADMYVQLGKTR-GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           YDAF+   L   Y Q   ++  +F  +        + +   +  ++ GC+ IG LR    
Sbjct: 87  YDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKC 146

Query: 221 LFGMMPK----KNVASWVSLIDGFMRKGD--LKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           + G + K    ++V    +LI  +   G+   + A ++F+  P+   V+W+AMI GF + 
Sbjct: 147 VHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEKVFDDSPKMDTVTWSAMIAGFVRL 206

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G + +A+ +F +M   GV  ++ T+VS LSACA +GALE G  V +Y+   +      + 
Sbjct: 207 GCSSRAVDLFREMQVMGVCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKSVELC 266

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+DM+AKCGN++ A  +F +   + +++WT++I GLA+HGR   A+  F +M+ +G  
Sbjct: 267 NALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGIT 326

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           PD   F+ +L+AC +SG V     +F SM  ++ I P V+H+  +V+LL R G   + ++
Sbjct: 327 PDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFE 386

Query: 455 NSQ---------------------------NSFTK-LLQLKPKHPSSYVLLSNIYAAEGR 486
             Q                            S +K L++ +P H S+YVLLSNIYA   +
Sbjct: 387 FVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIKSEPMHESNYVLLSNIYAKLRQ 446

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           W+   +VR +M  R +KK PG + IEVN  ++ F AG   H   KEI+  ++++    ++
Sbjct: 447 WEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDKSHDQYKEIYEMVDEMGREIKK 506

Query: 545 QGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY+P T  VL +I EE KE+AL  HSEKLA+AF L+ T PGT+I+IVK L +C DCHS 
Sbjct: 507 AGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNTPPGTSIRIVKNLRVCEDCHSA 566

Query: 604 MKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            K+ SK+  REIV+RD  RFH+FK+G CSCRD+W
Sbjct: 567 TKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 196/568 (34%), Positives = 306/568 (53%), Gaps = 76/568 (13%)

Query: 141 SLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           +L LL  + R LH  ++K  +E D FV V L DMY +      A   F+  PEK+    +
Sbjct: 343 ALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKD----L 398

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA------SWV------------------- 234
           + WN +I+G S+     +A+ LF  M K+ +       S +                   
Sbjct: 399 IAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGL 458

Query: 235 --------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                         SLID + +   ++ A  +FE+     +VS+T+MI  ++Q G+ E+A
Sbjct: 459 SVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEA 518

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           L +F +M D  ++ + F   S L+ACA + A E G ++H +I    F L    G +LV+M
Sbjct: 519 LKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNM 578

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAKCG+I+ A   F E  E+ +++W+AMI GLA HG   QA+Q F +M+  G  P+    
Sbjct: 579 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 638

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----- 455
           +++L AC ++G V  A  +F+SM   +  +P  +H+  +++LL R G+ ++  +      
Sbjct: 639 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 698

Query: 456 -----------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                   + +   L  L+P+   ++VLL+NIYA+ G+W++VA 
Sbjct: 699 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 758

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           VR LM+   +KK+PG S+IEV   V+ F  G   H  ++EI++KL+++     + GY+P 
Sbjct: 759 VRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPM 818

Query: 551 TEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
            E  LH++++ EKE  L  HSEKLA+AFGLI T  G  I++ K L +C DCH+  KY  K
Sbjct: 819 VEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICK 878

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I  REI++RD  RFH+FKDG+CSC DYW
Sbjct: 879 IVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 189/436 (43%), Gaps = 72/436 (16%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           TTAI    + K +  P++ ++ + ++S   ++ S +   QIHA I    L     I   L
Sbjct: 40  TTAILNLID-KGNFTPTS-VSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHL 97

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           I+  S  +   YA  + D  +  +L  ++ LI G A+N      +  F  M  L V+ N 
Sbjct: 98  INLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNE 157

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T+  V K+ + +  L +G+ +H ++V SG E D FV   L  MY +  +   + ++FDE
Sbjct: 158 FTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDE 217

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-NVASWV-------- 234
            PE+N    V+ WN L +   +  +  +AV LF      G+ P + +++S V        
Sbjct: 218 IPERN----VVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRD 273

Query: 235 ------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                                   +L+D + + GDL  A  +FE++ +  +VSW A+I G
Sbjct: 274 SSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAG 333

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
              +   E+AL +  QM                             ++H+ +   D    
Sbjct: 334 CVLHEHHEQALELLGQM---------------------------KRQLHSSLMKMDMESD 366

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +   LVDMY+KC  +E A + F    EKDL+ W A+I G + +    +A+  F +M  
Sbjct: 367 LFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHK 426

Query: 391 SGTEPDGTVFLAILTA 406
            G   + T    IL +
Sbjct: 427 EGIGFNQTTLSTILKS 442



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 172/397 (43%), Gaps = 38/397 (9%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+H+ ++  ++ +   ++  L+   S    ++ A   F+    K+L  +N +I G ++ 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +S FV M +  +  N+ T   + KS A L ++ + R +H L VKSG   D +V 
Sbjct: 412 WEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVV 471

Query: 168 VHLAD-------------------------------MYVQLGKTRGAFKVFDETPEKNKS 196
             L D                                Y Q G+   A K+F E  +    
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252
               + + L+N C+ +    +  +L   + K     ++ +  SL++ + + G +  AG  
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRA 591

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F ++ E+G+VSW+AMI G +Q+G   +AL +F QML  GV  N  T+VS L AC   G +
Sbjct: 592 FSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLV 651

Query: 313 -EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIW 370
            EA +   +      F         ++D+  + G I EA  LV     E +   W A++ 
Sbjct: 652 TEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLG 711

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTA 406
              IH   E   +  + +     E  GT V LA + A
Sbjct: 712 AARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYA 748



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/218 (27%), Positives = 110/218 (50%), Gaps = 4/218 (1%)

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKA 249
           N + + + ++ L++ C     LR  +++   + K  ++   S    LI+ + +      A
Sbjct: 51  NFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYA 110

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            +L ++  E  +VSW+A+I+G++QNG    AL  F +M   GV+ N+FT  S L AC+ V
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
             L  G +VH  +  + F     +   LV MYAKC     +  +F E  E+++++W A+ 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                     +A+  F +M+ SG +P+     +++ AC
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC 268



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 11/243 (4%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           HK      +T + +++ S+   + +   RQ+H   +     +   +   LI S      +
Sbjct: 425 HKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHV 484

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A  IF+  T  +L  F  +I   A+    +  +  F+ M  + ++P+R     +  + 
Sbjct: 485 EDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNAC 544

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A+LS    G+ LH  I+K G   D F    L +MY + G    A + F E  E+     +
Sbjct: 545 ANLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG----I 600

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQ 255
           + W+ +I G ++ G+ R+A++LF  M K+ V+    + VS++      G + +A   FE 
Sbjct: 601 VSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFES 660

Query: 256 MPE 258
           M E
Sbjct: 661 MEE 663


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  324 bits (830), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 210/655 (32%), Positives = 331/655 (50%), Gaps = 82/655 (12%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           SH P+    ++ + SL     +    +++HAQII   L         LI +      +  
Sbjct: 4   SHSPTVLALKSQLFSL--GRKNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKD 61

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV-----RPNRLTYPFVS 136
           AL +FD   P+  H+    +      S+    + H  F + L +     +P+   +  + 
Sbjct: 62  ALKLFDAL-PQQDHVAWATVLSACNLSN----LPHKAFSISLPILHEGLQPDHFVFSSLI 116

Query: 137 KSVASLSLL--SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           K+ A+L  +   LG+ LH   + S    D  V+  L DMY +            E P+  
Sbjct: 117 KACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKF-----------ELPDYG 165

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           ++                        +F  + + +  SW ++I G+ R G   +A ELF 
Sbjct: 166 RA------------------------VFDSIFELSSISWTAMISGYARSGRKLEALELFR 201

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL-SACAKVGALE 313
           + P K + +WTA+I+G  Q+G A  AL +F +M   GV   D  V+S++  ACA     E
Sbjct: 202 ESPFKNLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRE 261

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G +VH  +    +     I  ALVDMYAKC ++ AA  +F E + KD+++WT++I G A
Sbjct: 262 LGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTA 321

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            HG  E+A+  +  M+ +G +P+   F+ ++ AC + G V      F SM  D+ I PS+
Sbjct: 322 QHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSL 381

Query: 434 KHHTVVVNLLSRVGQDSQG-------------------------YQNSQNSF---TKLLQ 465
           +H+T +++L SR G   +                          + N++ +      LL 
Sbjct: 382 QHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLD 441

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           LKP+ PSSY+LLSNIYA  G W++V+ VR LM  + +KK PG+S +++      F AG  
Sbjct: 442 LKPEDPSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEA 501

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQT 582
              +  EI   +  + +  R +GY+P T  VL ++ ++EKE  L  HSE+LALA+GL++ 
Sbjct: 502 SQPMKDEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKA 561

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            PGTTI+IVK L +CGDCH+++K  S I+ REI +RD  R+H+FKDG CSC D+W
Sbjct: 562 VPGTTIRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 202/659 (30%), Positives = 329/659 (49%), Gaps = 74/659 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQ---LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           R++HA +    L + S +  Q   L+   +    +D AL +F     K+   +N ++   
Sbjct: 286 RELHAAL----LKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCY 341

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
            +N  +   I     MLR   +P+      +S +V  L  L  G+ +H   +K  ++ D 
Sbjct: 342 VQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDT 401

Query: 165 FVRVHLADMYV-------------------------------QLGKTRGAFKVFDETPEK 193
            V   L DMY+                               Q  +   A ++F E  ++
Sbjct: 402 QVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKE 461

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV---SLIDGFMRKGDLKKAG 250
                 ++   ++  CS +  +  A +L     +  +   V    +ID +   G++  + 
Sbjct: 462 GIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSL 521

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           ++FE + +K +V+WT+MIN ++ +G   +AL +F +M    V+ +   +VS L A   + 
Sbjct: 522 KMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLS 581

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           +L  G  VH ++   +F ++ AI ++LVDMY+ CG++  A  VF   K KD++ WTAMI 
Sbjct: 582 SLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMIN 641

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
              +HG  +QAI  FK+M+ +G  PD   FLA+L AC +S  V     + D M   Y +E
Sbjct: 642 ATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLE 701

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTK 462
           P  +H+  VV+LL R GQ  + Y+  ++                            +  +
Sbjct: 702 PWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANR 761

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           LL+L+P +P +YVL+SN++A  G+W +   VR  +  R ++KDP  S+IE+  +VH F  
Sbjct: 762 LLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTT 821

Query: 523 --GGHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFG 578
               H+ A+ I+ KL +I    R E GY   T  VLH++ +EEK + L  HSE+LA++FG
Sbjct: 822 RDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFG 881

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           LI T PG  ++I K L +CGDCH   K  SK+  R+IV+RD  RFH+F  G+CSC D+W
Sbjct: 882 LINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 180/398 (45%), Gaps = 46/398 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF-TPKNLHIFNVLIRGLAEN 107
           ++H   + H L  S+ +   LI+  +    +D A+ +F+     +++  +N +I G  +N
Sbjct: 185 EVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQN 244

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             F   +  F  M R  +  N  T   V +    L+ L+LGR LH  ++KSG E +    
Sbjct: 245 GMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCN 304

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G+   A +VF E  EK+     + WN +++   + G   +A+E    M +
Sbjct: 305 ALLV-MYTKCGRVDSALRVFREIDEKD----YISWNSMLSCYVQNGLYAEAIEFISEMLR 359

Query: 228 --------------------------KNVASWV-------------SLIDGFMRKGDLKK 248
                                     K V ++              +L+D +M+   ++ 
Sbjct: 360 GGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEY 419

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           +  +F++M  K  +SWT +I  ++Q+    +AL +F +    G++ +   + S L AC+ 
Sbjct: 420 SAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSG 479

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +  +    ++H Y   N   L   +   ++D+Y +CG +  +  +F   ++KD++TWT+M
Sbjct: 480 LETILLAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSM 538

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I   A  G   +A+  F +M  +  +PD    ++IL A
Sbjct: 539 INCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGA 576



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 107/435 (24%), Positives = 186/435 (42%), Gaps = 53/435 (12%)

Query: 21  SSHKPSNNITETH---IISLIHSSNSTKQLRQIHAQIILHNLFASSR--ITTQLISSASL 75
           +S  P  +  + H   ++ L+ +  +  Q  Q+HA  +           + T+L+     
Sbjct: 48  TSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGK 107

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF-MLRLS----VRPNRL 130
              +  A  +FD  + + +  +N LI   A  S   +C +  V+  +RLS    V P+  
Sbjct: 108 CGRVADARLLFDGMSSRTVFSWNALIG--AYLSSGSACEALGVYRAMRLSAASGVAPDGC 165

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T   V K+         G  +H L VK G++   FV   L  MY + G    A +VF+  
Sbjct: 166 TLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELM 225

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--NVASWVS------------- 235
              +    V  WN +I+GC + G   +A++LF  M +   ++ S+ +             
Sbjct: 226 ---HDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQL 282

Query: 236 -----------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                                  L+  + + G +  A  +F ++ EK  +SW +M++ + 
Sbjct: 283 NLGRELHAALLKSGSEVNIQCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYV 342

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG   +A+    +ML  G + +   +VS  SA   +G L  G  VH Y           
Sbjct: 343 QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLDSDTQ 402

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G  L+DMY KC  IE ++ VF   + KD ++WT +I   A   R+ +A++ F++    G
Sbjct: 403 VGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEG 462

Query: 393 TEPDGTVFLAILTAC 407
            + D  +  +IL AC
Sbjct: 463 IKVDPMMIGSILEAC 477



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 181/434 (41%), Gaps = 76/434 (17%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAF 184
           P +  Y +V   VA+   ++ G  +H   V +G     D F+   L  MY + G+   A 
Sbjct: 56  PPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADAR 115

Query: 185 KVFDETPEKNKSESVLLWNVLI-----------------------------NGCSKIGYL 215
            +FD       S +V  WN LI                             +GC+    L
Sbjct: 116 LLFDGM----SSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVL 171

Query: 216 ---------RKAVELFGMMPKKNV--ASWVS--LIDGFMRKGDLKKAGELFEQMPE-KGV 261
                    R   E+ G+  K  +  +++V+  LI  + + G L  A  +FE M + + V
Sbjct: 172 KASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDV 231

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
            SW +MI+G  QNG   +AL +F  M  A +  N +T V  L  C ++  L  G  +H  
Sbjct: 232 ASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAA 291

Query: 322 ---------ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
                    I CN          AL+ MY KCG +++A  VF E  EKD ++W +M+   
Sbjct: 292 LLKSGSEVNIQCN----------ALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCY 341

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
             +G Y +AI++  +M+  G +PD    +++ +A    G +   LN  +     Y I+  
Sbjct: 342 VQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAV---GHLGWLLNGKEV--HAYAIKQR 396

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
           +   T V N L  +    +  + S + F +   ++ K   S+  +   YA   R  +   
Sbjct: 397 LDSDTQVGNTLMDMYMKCRYIEYSAHVFDR---MRIKDHISWTTIITCYAQSSRHIEALE 453

Query: 493 VRTLMQRRSIKKDP 506
           +    Q+  IK DP
Sbjct: 454 IFREAQKEGIKVDP 467


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 207/673 (30%), Positives = 344/673 (51%), Gaps = 88/673 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IH   I   L A   ++T L+        +  A  IF     ++L  +N ++ G A +
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 108 SHFQSCISHFVFM-LRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV--------- 156
             +   ++H + M +++  +RPN  T   +   +A    L+ G  +H   +         
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRN 264

Query: 157 -KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------- 208
            KS +     +   L DMY + G    A +VFD  P +N+    + W+ LI G       
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE----VTWSALIGGFVLCSRM 320

Query: 209 -----------------------------CSKIGYLRKAVELFGMMPKKNVASWV----S 235
                                        C+ + +LR   +L  ++ K  V + +    S
Sbjct: 321 TQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS 380

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G + +A  LF++M  K  VS++A+++G+ QNG AE+A  +F +M    V  +
Sbjct: 381 LLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+VS + AC+ + AL+ G   H  +       + +I  AL+DMYAKCG I+ +  VF 
Sbjct: 441 AATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 500

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               +D+++W  MI G  IHG  ++A   F +M   G  PDG  F+ +L+AC +SG V  
Sbjct: 501 MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------- 458
             ++F  MR  Y + P ++H+  +V+LLSR G   + Y+  Q+                 
Sbjct: 561 GKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGAC 620

Query: 459 ----------SFTKLLQ-LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                       ++++Q L P+   ++VLLSNIY+A GR+ + A VR + + +  KK PG
Sbjct: 621 RVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPG 680

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE- 564
            S+IE+NG +H F  G   H  + EI+ +L++I+ G ++ GY P T +VL +++EE++E 
Sbjct: 681 CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEK 740

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
           AL CHSEKLA+A+G++  +   TI + K L +CGDCH+++K+ S + +R I++RD  RFH
Sbjct: 741 ALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFH 800

Query: 624 YFKDGTCSCRDYW 636
           +FK+G CSC D+W
Sbjct: 801 HFKNGQCSCGDFW 813



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 166/377 (44%), Gaps = 58/377 (15%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASL 142
           +FD     ++  +N LIR  + +S   +     ++  MLR  V PN  T+PF  K+ ++L
Sbjct: 79  LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           +    GR +H   + +G++ D FV   L DMYV+      A  +F   P ++    ++ W
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD----LVAW 194

Query: 203 NVLINGCSKIGYLRKAVE------------------LFGMMP------------------ 226
           N ++ G +  G    AV                   L  ++P                  
Sbjct: 195 NAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYR 254

Query: 227 ---------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                             V    +L+D + + G L  A  +F+ MP +  V+W+A+I GF
Sbjct: 255 IRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGF 314

Query: 272 SQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
                  +A  +F  ML  G+   +  ++ SAL ACA +  L  G ++H  ++ +     
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHAD 374

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              G +L+ MYAK G I+ A  +F E   KD ++++A++ G   +GR E+A   FKKM  
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 434

Query: 391 SGTEPDGTVFLAILTAC 407
              EPD    ++++ AC
Sbjct: 435 CNVEPDAATMVSLIPAC 451



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRANDFTVVS 301
           G L +A  LF+Q+P   V ++  +I  +S +    A   L ++ +ML   V  N++T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
           AL AC+ +     G  +H +           + TAL+DMY KC  +  A+ +F     +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYF--KKMMYSGTEPDGTVFLAIL 404
           L+ W AM+ G A HG Y  A+ +    +M      P+ +  +A+L
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 235



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 147/339 (43%), Gaps = 24/339 (7%)

Query: 29  ITETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           ++ T I S + +  S   LR   Q+HA +    + A       L+S  +    ID A+++
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    K+   ++ L+ G  +N   +     F  M   +V P+  T   +  + + L+ L
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             GR  H  ++  G+  +  +   L DMY + G+   + +VF+  P ++    ++ WN +
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD----IVSWNTM 513

Query: 206 INGCSKIGYLRKAVELFGMM-----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           I G    G  ++A  LF  M     P   V +++ L+      G + +    F  M    
Sbjct: 514 IAGYGIHGLGKEATALFLEMNNLGFPPDGV-TFICLLSACSHSGLVIEGKHWFHVMRHGY 572

Query: 261 VVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
            ++     +  M++  S+ G  ++A   F Q +   +RA+    V+ L AC     ++ G
Sbjct: 573 GLTPRMEHYICMVDLLSRGGFLDEAYE-FIQSMP--LRADVRVWVALLGACRVYKNIDLG 629

Query: 316 VRVHNYISCNDFGLKGAIGTALV-DMYAKCGNIEAASLV 353
            +V   I   + G +G     L+ ++Y+  G  + A+ V
Sbjct: 630 KKVSRMI--QELGPEGTGNFVLLSNIYSAAGRFDEAAEV 666


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/660 (31%), Positives = 329/660 (49%), Gaps = 72/660 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T    + LIHSS ST+         +LH     +R+         LH     A ++FDH 
Sbjct: 36  TSLTTLKLIHSSLSTRGF-------LLHTPHFLARLIILYSKLGDLHS----ARTLFDHR 84

Query: 90  T--------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
                      N  + N ++R  A        I  +++M R+ V  N  TYPFV K  AS
Sbjct: 85  HHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCAS 144

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
                 G  +H  +V++G   D FV   L DMY + G+   A +VFD    ++    V+ 
Sbjct: 145 ELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRD----VVC 200

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKK----------NVASWV-SLIDGFMRKGDLKKAG 250
           W  +I    +     KA+ LF  M ++          +VAS V  L DG M    + +A 
Sbjct: 201 WTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMA---ISRAR 257

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            +F++M E+  +SW +M++G++QNG    AL++F QM  +    N  T +  +SAC+ +G
Sbjct: 258 LVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLG 317

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAM 368
           +   G ++HN++  +   +   +  A++DMY KCG+++ A  +F   E  E+D+ +W  +
Sbjct: 318 SKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVL 377

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G  +HG  ++A++ F +M   G EP+   F +IL+AC ++G +      F  M     
Sbjct: 378 ISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMT-KLS 436

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSF 460
           + P +KH+  +V++L R G  ++ +                            +  + + 
Sbjct: 437 VRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGEIAA 496

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
             L QL+P+H   YVL+SNIYAA  +WK+V  VR  M+ R +KK   +S IE    VH F
Sbjct: 497 NNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEVHGF 556

Query: 521 EAGGHK--LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAF 577
                     +E++ K+E +    +  GY+P    VLH+++ E+KE  L  HSEKLA+AF
Sbjct: 557 HTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLAVAF 616

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G+++   G  I++ K L +C DCH   K+ S I  R+I++RD  RFH+F+ G CSC DYW
Sbjct: 617 GIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCGDYW 676


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 209/641 (32%), Positives = 316/641 (49%), Gaps = 77/641 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           ++S+ S   +I      FD     ++  +N LI     N  F  C   F  ML   + P 
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINPG 60

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +       +      +++GR +   I+ +G+E ++ V+  L  MY +LG    A  VF 
Sbjct: 61  EVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFL 120

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
               ++    V+ W+ ++   ++ G+ R+A+ LF  M    VA    + VS +D     G
Sbjct: 121 RMSHRD----VVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLG 176

Query: 245 DLKK-----------------------------------AGELFEQMPEKGVVSWTAMIN 269
           DL+                                    A E F Q+ EK VV+W+A+  
Sbjct: 177 DLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISA 236

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            +++N     A+ +  +M   G+  N  T VS L ACA + AL+ G R+H        GL
Sbjct: 237 AYARNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGL 296

Query: 330 KGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
           +  +   TALV+MY+KCGN+  A  +F +    DL+ W ++I   A HG+ E+A++ F++
Sbjct: 297 ESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFER 356

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M   G +P    F ++L AC ++G +      F S   D+ I P  +H   +V+LL R G
Sbjct: 357 MRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAG 416

Query: 448 Q--DSQG-----------------------YQNSQNSF---TKLLQLKPKHPSSYVLLSN 479
              DS+                        Y+N   +      L QL P+  + YVLLSN
Sbjct: 417 WIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSN 476

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLED 537
           +YA  GRW DVAR+R  MQ     K+ G S+IEV   VH F +G   H    EIH++L+ 
Sbjct: 477 MYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQR 536

Query: 538 IMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           +    +E GY+P TE VLH++K+E KE  +G HSEKLA+AF L+ T  G+ I++VK L +
Sbjct: 537 LTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRV 596

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           C DCH+  K+ SK+  REIV+RD  RFH F++G CSC DYW
Sbjct: 597 CNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 213/724 (29%), Positives = 345/724 (47%), Gaps = 143/724 (19%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSAS-LHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
            LRQ+HAQII ++L   +     LI+  + L     Y   +F+     N+ +F  ++R  
Sbjct: 16  HLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           +        +  +  M    VRP+   YP + KS  +      G G H  ++K G   DA
Sbjct: 76  SHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG-----GIGFHAHVLKLGHGSDA 130

Query: 165 FVRVHLADMYVQLGKTRGAFKVF---------------------------------DETP 191
           FVR  + DMY +LG    A KVF                                 D  P
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMP 190

Query: 192 EKN---------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           E+N                              SV+ WN +++G ++ G   +A+ LF  
Sbjct: 191 ERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDE 250

Query: 225 MPKKNV----ASWVS-----------------------------------LIDGFMRKGD 245
           M    +     +WV+                                   L+D + + GD
Sbjct: 251 MVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGD 310

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALS 304
           L  A +LF  MP + VV+W +MI G++QNG++  A+ +F +M+ A  +  ++ T+VS +S
Sbjct: 311 LDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVIS 370

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC  +GALE G  V  +++ N   L  +   A++ MY++CG++E A  VF E   +D+++
Sbjct: 371 ACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 430

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           +  +I G A HG   +AI     M   G EPD   F+ +LTAC ++G ++     F+S++
Sbjct: 431 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK 490

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-------------------------- 458
                +P++ H+  +V+LL RVG+     +  +                           
Sbjct: 491 -----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELG 545

Query: 459 --SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
             +  KL +L+P +  +++LLSNIYA+ GRWKDV R+R  M++  +KK  GWS++E  G 
Sbjct: 546 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 605

Query: 517 VHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKL 573
           +H+F      H+ + +I+  L ++    RE GY+     VL +++EE++E + G HSEKL
Sbjct: 606 LHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKL 665

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+ + L+ +  G  I++VK L +C DCH+ +K  SK+  R I++RD  RFH F DG CSC
Sbjct: 666 AICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSC 725

Query: 633 RDYW 636
           +DYW
Sbjct: 726 KDYW 729


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 163/435 (37%), Positives = 269/435 (61%), Gaps = 33/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D ++++G++ +A ++F+++ EK +V+W+AMI G++Q G+ E A+ +F QM    ++ 
Sbjct: 46  ALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKP 105

Query: 295 NDFTVVSALSACA-KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           N++T    ++ACA     +E G ++H +   + F     + +AL+ MY+K G+IE+A  V
Sbjct: 106 NEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEV 165

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F   +E+DL++W ++I G A HG   +A++ F++M     E DG  F+ +++AC ++G  
Sbjct: 166 FKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLA 225

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSF----- 460
                +FD M  D+ IEP ++H++ +V+L  R G         +   +  S N +     
Sbjct: 226 NEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLA 285

Query: 461 ---------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                           KL+ L+P++P+SYVLL+N+YA+ G WK+ A+VR LM+ + +KK 
Sbjct: 286 ASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASVGNWKERAKVRKLMEEKKVKKV 345

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKE 563
            G+S+IEV    + F AG   H L+ +I++KLE++    +  GY P T +V  ++ EE +
Sbjct: 346 AGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQLKGAGYQPDTSYVFQDVDEEHK 405

Query: 564 EA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           EA L  HSE+LA+AFGLI T PGT ++IVK L +CGDCHS++K  S +  R+IV+RD+ R
Sbjct: 406 EAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCHSVIKLISILEGRDIVVRDSNR 465

Query: 622 FHYFKDGTCSCRDYW 636
           FH+FK G CSC DYW
Sbjct: 466 FHHFKGGLCSCGDYW 480



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 65/123 (52%), Gaps = 8/123 (6%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRV--HNYISCNDFGLKGAIGTALVDMYAKC 344
           M   G++ NDFT  + L+A   V   E   +    NY+         ++GTAL+D Y K 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPFEMHAQAIKRNYVK------SPSVGTALLDAYVKR 54

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           GN++ AS VF   +EKD++ W+AMI G A  G  E A++ F +M     +P+   F  I+
Sbjct: 55  GNVDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRIFVQMAKEKIKPNEYTFSGII 114

Query: 405 TAC 407
            AC
Sbjct: 115 NAC 117



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 102/245 (41%), Gaps = 40/245 (16%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++HAQ I  N   S  + T L+ +     ++D A  +F     K++  ++ +I G A+  
Sbjct: 27  EMHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIG 86

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYP-FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             +  +  FV M +  ++PN  T+   ++   A  + +  G+ LH   +KS       V 
Sbjct: 87  DTEGAVRIFVQMAKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVS 146

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY                                   SK G +  A E+F    +
Sbjct: 147 SALLTMY-----------------------------------SKRGDIESAFEVFKRQRE 171

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAM 283
           +++ SW S+I G+ + G  +KA E+FE+M  + +    V++  +I+  +  G A +    
Sbjct: 172 RDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISACTHTGLANEGQRY 231

Query: 284 FFQML 288
           F  M+
Sbjct: 232 FDIMV 236



 Score = 45.4 bits (106), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 20  KSSHKPSNNITETHIISLIHSSNS-TKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           K   KP N  T + II+   +  +  +Q +Q+HA  I      +  +++ L++  S    
Sbjct: 100 KEKIKP-NEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVSSALLTMYSKRGD 158

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A  +F     ++L  +N +I G A++ + +  +  F  M R ++  + +T+  V  +
Sbjct: 159 IESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQNLEMDGVTFIGVISA 218

Query: 139 VASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
                L + G+    ++VK   +E        + D+Y + G    A ++ +E P      
Sbjct: 219 CTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKAMEIINEMP---FPA 275

Query: 198 SVLLWNVLINGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           S  +W  L+         ++G L  A +L  + P +N AS+V L + +   G+ K+  ++
Sbjct: 276 SANVWRTLLAASCIHRNLEVGKL-AADKLISLQP-QNPASYVLLTNMYASVGNWKERAKV 333

Query: 253 FEQMPEKGV-----VSWTAMIN 269
            + M EK V      SW  + N
Sbjct: 334 RKLMEEKKVKKVAGYSWIEVKN 355


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 206/677 (30%), Positives = 334/677 (49%), Gaps = 78/677 (11%)

Query: 34  IISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I SL+ + ++   LR   Q+H+ ++   +     +   L+        I+ AL IFD   
Sbjct: 247 IASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGD 306

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
             N+ ++N+++    +          F  ML   VRPN+ TYP + ++      + LG  
Sbjct: 307 RTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQ 366

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H L +K+G + D +V   L DMY + G    A ++ D   EK+    V+ W  +I G  
Sbjct: 367 IHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKD----VVSWTSMIAGYV 422

Query: 211 KIGYLRKAVELF------GMMPKK---------------------------------NVA 231
           +  + ++A+E F      G+ P                                   +V+
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVS 482

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
            W  L+  + R G  K+A   FE +  K  ++W  +I+GF+Q+G  E+AL +F +M  AG
Sbjct: 483 IWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAG 542

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
            + N FT VS++SA A +  ++ G ++H  +    +  +  I  AL+ +Y KCG+IE A 
Sbjct: 543 AKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAK 602

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
           + F E  +++ ++W  +I   + HGR  +A+  F +M   G +P    F+ +LTAC + G
Sbjct: 603 MDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVG 662

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQN- 455
            V+  L +F SM  ++ I P   H+  VV++L R GQ               DS  ++  
Sbjct: 663 LVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTL 722

Query: 456 ------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                        + +   LL+L+P   +SYVLLSN YA  G+W    ++R +M+ R ++
Sbjct: 723 LSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVR 782

Query: 504 KDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KE 560
           K+PG S+IEV   VH F  G   H LA +I++ L  +     + GY      + H   KE
Sbjct: 783 KEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKE 842

Query: 561 EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT 620
            K+     HSEKLA+AFGL+       ++++K L +C DCH+ MK+ S +  REIVLRD 
Sbjct: 843 GKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDV 902

Query: 621 -RFHYFKDGTCSCRDYW 636
            RFH+F +G+CSC DYW
Sbjct: 903 YRFHHFNNGSCSCGDYW 919



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/424 (26%), Positives = 198/424 (46%), Gaps = 47/424 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQL----RQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S  +   +++S I S+ +  +L    R IH Q+     F+ + +   LIS     +S   
Sbjct: 137 SGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRL 196

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F      +   FN LI G A+  H    +  F  M    + P+ +T   +  + ++
Sbjct: 197 ADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSA 256

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +  L  G+ LH  ++K+G+  D  +   L D+YV+ G    A ++FD     N    V+L
Sbjct: 257 VGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTN----VVL 312

Query: 202 WNVLINGCSKIGYLRKAVELF------GMMPKK--------------------------- 228
           WN+++    +I  L K+ ++F      G+ P K                           
Sbjct: 313 WNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTI 372

Query: 229 ----NVASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                   +VS  LID + + G L KA  + + + EK VVSWT+MI G+ Q+   ++AL 
Sbjct: 373 KNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALE 432

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            F +M   G+  ++  + SA+SACA + A+  G ++H  +  + +    +I   LV +YA
Sbjct: 433 TFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYA 492

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           +CG  + A   F   + K+ +TW  +I G A  G YE+A++ F KM  +G + +   F++
Sbjct: 493 RCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVS 552

Query: 403 ILTA 406
            ++A
Sbjct: 553 SISA 556



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 173/394 (43%), Gaps = 35/394 (8%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           +IHA+ I+  L     I   LI   +    +  A  +F+  + ++   +  ++ G A+N 
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +  +  M R  V P       +  +     L  LGR +H  + K G   + FV  
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGN 182

Query: 169 HLADMYV-------------------------------QLGKTRGAFKVFDETPEKNKSE 197
            L  +Y+                               Q G    A  +FDE      S 
Sbjct: 183 ALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSP 242

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-SWV---SLIDGFMRKGDLKKAGELF 253
             +    L+  CS +G LRK  +L   + K  ++  ++   SL+D +++ GD+++A ++F
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIF 302

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           +      VV W  M+  + Q  +  K+  +F++ML AGVR N FT    L  C   G + 
Sbjct: 303 DSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIG 362

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G ++H+    N F     +   L+DMY+K G ++ A  +    +EKD+++WT+MI G  
Sbjct: 363 LGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYV 422

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            H   ++A++ FK+M   G  PD     + ++AC
Sbjct: 423 QHEFCKEALETFKEMQACGIWPDNIGLASAISAC 456



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 105/203 (51%), Gaps = 5/203 (2%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LID + +KG +++A  +FE++  +  VSW A+++G++QNG  E+A+ ++ +M  +GV   
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPT 142

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            + + S LSAC K    + G  +H  +    F  +  +G AL+ +Y +C +   A  VF 
Sbjct: 143 PYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFC 202

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           +    D +T+  +I G A  G  ++A+  F +M  SG  PD     ++L AC   G ++ 
Sbjct: 203 DMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRK 262

Query: 416 ALNFFD-----SMRFDYFIEPSV 433
                       M  DY +E S+
Sbjct: 263 GKQLHSYLLKAGMSLDYIMEGSL 285



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/286 (23%), Positives = 129/286 (45%), Gaps = 43/286 (15%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------G 223
           L D+Y + G  R A +VF+E   ++     + W  +++G ++ G   +AV L+      G
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVRDN----VSWVAVLSGYAQNGLGEEAVRLYREMHRSG 138

Query: 224 MMPKKNVASWV---------------------------------SLIDGFMRKGDLKKAG 250
           ++P   V S +                                 +LI  ++R    + A 
Sbjct: 139 VVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLAD 198

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            +F  M     V++  +I+G +Q G  ++AL +F +M  +G+  +  T+ S L+AC+ VG
Sbjct: 199 RVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVG 258

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            L  G ++H+Y+      L   +  +L+D+Y K G+IE A  +F      +++ W  M+ 
Sbjct: 259 DLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLV 318

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
                    ++   F +M+ +G  P+   +  +L  C ++G++ L 
Sbjct: 319 AYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLG 364



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 79/162 (48%), Gaps = 19/162 (11%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS-ACAKVGALEA 314
           M  +G  S+   + GF    + EK L +F        +   + V+ A+  ACA      +
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLF------AAKCRQYMVLGAVDFACALRACRGS 54

Query: 315 GVR------VH-NYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           G R      +H   I C   GL G   IG  L+D+YAK G +  A  VF E   +D ++W
Sbjct: 55  GRRWPLVPEIHAKAIIC---GLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSW 111

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            A++ G A +G  E+A++ +++M  SG  P   V  +IL+AC
Sbjct: 112 VAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSAC 153



 Score = 42.0 bits (97), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 104/241 (43%), Gaps = 19/241 (7%)

Query: 32  THIISLIHSSN--STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T + S+  S+N    KQ +QIHA++I     + + I+  LIS      SI+ A   F   
Sbjct: 549 TFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEM 608

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           T +N   +N +I   +++      +  F  M +  ++P+ +T+  V  + + + L+  G 
Sbjct: 609 TKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGL 668

Query: 150 GLHCLIVKSGVEYDAFVR----VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
              C       E+    R      + D+  + G+   A +  +E P    S   ++W  L
Sbjct: 669 ---CYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADS---MVWRTL 722

Query: 206 INGCS-----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++ C      +IG    A  L  + P  + AS+V L + +   G      ++ + M ++G
Sbjct: 723 LSACKVHKNLEIGEF-AAKHLLELEPHDS-ASYVLLSNAYAVTGKWASRDQIRKIMKDRG 780

Query: 261 V 261
           V
Sbjct: 781 V 781


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 220/650 (33%), Positives = 334/650 (51%), Gaps = 106/650 (16%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K  H P+ N+       L+ +    K L Q+HA +I+     S  + T+L++ A    SI
Sbjct: 8   KHPHSPAYNL-------LLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSI 60

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKS 138
            Y   IF      +  +F  LIR  ++  +F     +F   + LS V P+   Y F S  
Sbjct: 61  SYTRQIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPS--NYTFTS-- 116

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
                           ++KS            AD+ V L   R                 
Sbjct: 117 ----------------VIKS-----------CADL-VALRHGR----------------- 131

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           ++  +VL+NG             FG     +V    +L+  + + G L  A ++F++M +
Sbjct: 132 IIHGHVLVNG-------------FG----SDVYVQTALMSFYGKCGVLCNARKVFDKMRD 174

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + VV+W +MI+G+ QNG A++A+ +F +M + GV  N  T VS LSACA +GA   G  V
Sbjct: 175 RSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSVLSACAHLGAFILGCWV 234

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H Y   N   L   +GT+L++MY +CGN+  A  VF   KE++++ WTAMI G   +G  
Sbjct: 235 HEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYG 294

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            QA++ F +M  +G  P+   F+A+L+AC ++G V      F+SMR +Y + P V+HH  
Sbjct: 295 SQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVC 354

Query: 439 VVNLLSRVGQDSQGY--------QNSQNSFTKLLQL--------------------KPKH 470
           +V++L R G   + Y        + +   +T +L                      +P +
Sbjct: 355 LVDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGN 414

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
           P+ YV+LSNIYA  GR   V  VR  M R+ +KK  G+S I+++   + F  G   H   
Sbjct: 415 PAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTIDLDRKTYLFSMGDKSHTET 474

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTT 587
            EI+  L+ +M   RE GY+  ++ V+H ++EE+ E ALG HSEKLA+AFGL++T+ GT 
Sbjct: 475 NEIYHYLDQLMRKCREAGYVTVSDSVMHELEEEEREYALGYHSEKLAIAFGLLKTSRGTV 534

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           I+IVK L +C DCHS +KY S IS REI++RD  RFH+FK+G+CSC DYW
Sbjct: 535 IRIVKNLRMCEDCHSAIKYISVISNREIIVRDKLRFHHFKNGSCSCLDYW 584



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 115/250 (46%), Gaps = 13/250 (5%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL 75
           T  + S+  PSN  T T +I       + +  R IH  ++++   +   + T L+S    
Sbjct: 100 TRMVLSNVAPSN-YTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGK 158

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
              +  A  +FD    +++  +N +I G  +N   +  I  F  M  + V PN  T+  V
Sbjct: 159 CGVLCNARKVFDKMRDRSVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVSV 218

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
             + A L    LG  +H   V +G++ +  +   L +MY + G    A +VFD   E+N 
Sbjct: 219 LSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERN- 277

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKA 249
              V+ W  +I+G    GY  +AVELF      G++P  N  ++V+++      G + + 
Sbjct: 278 ---VVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLP--NSITFVAVLSACAHAGLVNEG 332

Query: 250 GELFEQMPEK 259
             +FE M E+
Sbjct: 333 RRVFESMREE 342


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 198/589 (33%), Positives = 301/589 (51%), Gaps = 68/589 (11%)

Query: 81  YAL-SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           YA+  IFD F+ KNL ++N ++    ++      +     ML+   RP+++T      + 
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAAC 334

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L  LS+G+  H  + ++G+E    +   + DMY++ GK   A KV             
Sbjct: 335 AQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKV------------- 381

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
                                 F  M  K V +W SLI G +R G+L+ A  +F +MPE 
Sbjct: 382 ----------------------FDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPES 419

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            +VSW  MI    Q    E+A+ +  +M + G++ +  T+V   SAC  +GAL+    ++
Sbjct: 420 NLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWIY 479

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            YI  ND  +   +GTALVDM+++CG+   A  VF   +++D+  WTA I   A+ G  +
Sbjct: 480 TYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAK 539

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
            AI+ F +M+    + D  VF+A+LTA  + G V      F +M   + + P + H+  +
Sbjct: 540 GAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIHGVSPQIVHYGCM 599

Query: 440 VNLLSRVGQDSQGYQNSQN-----------SF-----------------TKLLQLKPKHP 471
           V+LL R G   + +   ++           SF                  K+ QL P+  
Sbjct: 600 VDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYADEKITQLAPEKV 659

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             +VLLSNIYA+ G+W DVARVR  M+ +  +K  G S IEV+G +  F +G   H    
Sbjct: 660 GIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIREFTSGDESHTENA 719

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTI 588
           +I   L++I     + GY+P T  VL ++ E EKE  L  HSEKLA+A+GLI T  G  I
Sbjct: 720 QIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMAYGLINTGKGIPI 779

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++VK L +C DCHS  K  SK+  REI +RD  R+H+FK+G CSCRD+W
Sbjct: 780 RVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDFW 828



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 143/566 (25%), Positives = 249/566 (43%), Gaps = 98/566 (17%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           + PTT    + KP N        S + +  +  +L+Q+H  ++   +F  +++    +  
Sbjct: 16  LLPTT----TQKPKN--------SSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQM 63

Query: 73  ASLHKSIDYALSIF--DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNR 129
            + H+S++YAL+ F  D  T  +L+  N LIRG A +   +  I  ++ M+  + + P+ 
Sbjct: 64  GT-HESLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDN 122

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
            T+PF+  + + +   S G  +H ++VK G+  D FV   L   Y   GK     KVFDE
Sbjct: 123 FTFPFLLSACSKIMAFSEGVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDE 182

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP----------------- 226
             E+N    V+ W  LING S +   ++AV LF      G+ P                 
Sbjct: 183 MLERN----VVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKD 238

Query: 227 ----------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                           K N     +L+D +M+ GD+    E+F++  +K +V +  +++ 
Sbjct: 239 LELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSN 298

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           + Q+G A + L +  +ML  G R +  T++S ++ACA++G L  G   H Y+  N     
Sbjct: 299 YVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERL 358

Query: 331 GAIGTALVDMYAKCGNIEAASLV-------------------------------FGETKE 359
             I  A++DMY KCG  EAA  V                               FGE  E
Sbjct: 359 DNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPE 418

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
            +L++W  MI  +     +E+AI   ++M   G + D    + I +AC Y G + LA   
Sbjct: 419 SNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGDRVTMVGIASACGYLGALDLAKWI 478

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
           +  +  +  I   ++  T +V++ SR G       +  N+      ++ +  S++     
Sbjct: 479 YTYIEKND-IHIDMQLGTALVDMFSRCG-------DPLNAMRVFENMEKRDVSAWTAAIR 530

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKD 505
           + A EG  K    +   M ++ +K D
Sbjct: 531 VKAVEGNAKGAIELFDEMLKQDVKAD 556



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 129/304 (42%), Gaps = 23/304 (7%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI+       ++ AL IF      NL  +N +I  + + S F+  I     M    ++ +
Sbjct: 396 LIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKGD 455

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
           R+T   ++ +   L  L L + ++  I K+ +  D  +   L DM+ + G    A +VF+
Sbjct: 456 RVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFE 515

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKG 244
              +++ S     W   I   +  G  + A+ELF  M K++V +    +V+L+  F   G
Sbjct: 516 NMEKRDVSA----WTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGG 571

Query: 245 DLKKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
            + +  +LF  M +       +V +  M++   + G  E+A  +   M    ++ ND   
Sbjct: 572 YVDQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSM---PIKPNDVIW 628

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGE 356
            S L+AC K       V   NY       L   K  I   L ++YA  G     + V  +
Sbjct: 629 GSFLAACRK----HKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQ 684

Query: 357 TKEK 360
            KEK
Sbjct: 685 MKEK 688


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 203/651 (31%), Positives = 324/651 (49%), Gaps = 79/651 (12%)

Query: 57  HNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116
           HN F  S     LI + SL   +  A  +F+    K+  ++  ++   +EN   ++    
Sbjct: 195 HNAFVGS----GLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRV 250

Query: 117 FVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176
           F  M     +PN      V K+   L  + LG+G+H   +K+  + +  V   L DMY +
Sbjct: 251 FSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAK 310

Query: 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNV 230
            G  + A   F+  P     + V+L + +I+  ++     +A ELF       ++P +  
Sbjct: 311 CGDIKDARLAFEMIPY----DDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYS 366

Query: 231 ASWV---------------------------------SLIDGFMRKGDLKKAGELFEQMP 257
            S V                                 +L+D + +  D+  + ++F  + 
Sbjct: 367 LSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR 426

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +   VSW  ++ GFSQ+G  E+AL++F +M  A +     T  S L ACA   ++    +
Sbjct: 427 DANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQ 486

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H  I  + F     IG +L+D YAKCG I  A  VF    E+D+++W A+I G A+HG+
Sbjct: 487 IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQ 546

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
              A++ F +M  S  E +   F+A+L+ C  +G V   L+ FDSMR D+ I+PS++H+T
Sbjct: 547 AADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYT 606

Query: 438 VVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPK 469
            +V LL R G+ +   Q   +                            S  K+L+++P+
Sbjct: 607 CIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQ 666

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKL 527
             ++YVLLSN+YAA G    VA +R  M+   ++K PG S++E+ G +H F  G   H  
Sbjct: 667 DETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPD 726

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGT 586
            + I++ LE +      +GY+P    VLH++ KE+K   L  HSE+LALA+GL+ T PG 
Sbjct: 727 MRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGH 786

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            I+I+K L  C DCH+     SKI +REI++RD  RFH+F+DG CSC DYW
Sbjct: 787 PIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L++ + + G L  A  LF++MPE+ +VS+  ++   +Q G+ E A A+F ++   G   N
Sbjct: 102 LLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVN 161

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            F + + L     + A      VH+            +G+ L+D Y+ C  +  A  VF 
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFN 221

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
               KD + WTAM+   + +   E A + F KM  SG +P+     ++L A
Sbjct: 222 GIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKA 272



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/234 (25%), Positives = 103/234 (44%), Gaps = 11/234 (4%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            E  + S++ +  +  QL   +QIH   I     +   +   L+   +    +D +L IF
Sbjct: 363 NEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIF 422

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                 N   +N ++ G +++   +  +S F  M    +   ++TY  V ++ AS + + 
Sbjct: 423 SSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIR 482

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
               +HC I KS    D  +   L D Y + G  R A KVF    E++    ++ WN +I
Sbjct: 483 HAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERD----IISWNAII 538

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQM 256
           +G +  G    A+ELF  M K NV S    +V+L+      G +     LF+ M
Sbjct: 539 SGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSM 592



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 56/278 (20%), Positives = 115/278 (41%), Gaps = 25/278 (8%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A++    ++++  P   +T + ++    S+ S +   QIH  I        + I   LI 
Sbjct: 449 ALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLID 508

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           + +    I  AL +F H   +++  +N +I G A +      +  F  M + +V  N +T
Sbjct: 509 TYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDIT 568

Query: 132 YPFVSKSVASLSLLSLGRGL-HCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFK 185
           +  +    +S  L++ G  L   + +  G++     Y   VR     +  + G+   A +
Sbjct: 569 FVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVR-----LLGRAGRLNDALQ 623

Query: 186 VFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
              + P    + S ++W  L++ C     +   R + E    +  ++  ++V L + +  
Sbjct: 624 FIGDIP---SAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAA 680

Query: 243 KGDLKKAGELFEQMPEKGV-----VSWTAM---INGFS 272
            G L +   L + M   GV     +SW  +   I+ FS
Sbjct: 681 AGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFS 718


>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
 gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
          Length = 933

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 172/531 (32%), Positives = 291/531 (54%), Gaps = 35/531 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           ++A ++  N      +  Q IS+ S    +DYA+  +      N+ ++N +I+G  ++  
Sbjct: 1   MYAVMVKTNTNQDCYLMNQFISALSTFNRMDYAVLAYTQMEIPNVFVYNAMIKGFVQSYQ 60

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
               +  +V MLR +V P   T+P + K+   +S L     +H  + ++G +   FV+  
Sbjct: 61  PVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHVWRNGFDSHVFVQTS 120

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L D Y  +G+   + +VFDE PE++    V  W  +++G  ++G +  A  LF MMP +N
Sbjct: 121 LVDFYSSMGRIEESVRVFDEMPERD----VFAWTTMVSGLVRVGDMSSAGRLFDMMPDRN 176

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           +A+W +LIDG+ R  ++  A  LF QMP + ++SWT MIN +SQN    +AL +F +M  
Sbjct: 177 LATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFREALGVFNEMAK 236

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G+  ++ T+ + +SACA +GAL+ G  +H YI  + F L   IG+AL+DMYAKCG+++ 
Sbjct: 237 HGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDR 296

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           + L+F + +EK+L  W ++I GLA+HG  E+A+  F KM     +P+G  F+++L+AC +
Sbjct: 297 SLLMFFKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNH 356

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------- 454
           +G ++     F SM  D+ I P V+H+  +V+LLS+ G   +  Q               
Sbjct: 357 AGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRTMKLEPNAVIWG 416

Query: 455 -------------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                         +Q +  KL+ L+P +   Y LL N+ A   RW + A++R  M+ + 
Sbjct: 417 ALLSGCKLHRNLEIAQVAANKLMVLEPGNSGYYTLLVNMNAEVNRWGEAAKIRLTMKEQG 476

Query: 502 IKKD-PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMP 549
           ++K  PG S+IE+   VH+F A    H  + EI+S L ++    +  GY+P
Sbjct: 477 VEKRCPGSSWIEMESQVHQFAASDKSHAASDEIYSLLAELDGQMKLAGYVP 527



 Score = 45.8 bits (107), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 81/193 (41%), Gaps = 22/193 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T   +IS      +    ++IH  I+ H       I + LI   +   S+D +L +F
Sbjct: 242 DEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKCGSLDRSLLMF 301

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                KNL  +N +I GLA + + +  ++ F  M R  ++PN +T+  V  +     L+ 
Sbjct: 302 FKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKPNGVTFVSVLSACNHAGLIE 361

Query: 147 LGRGLHCLI-----VKSGVEY-----DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            GR     +     +  GVE+     D   +  L +  +QL +T                
Sbjct: 362 EGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQLIRT------------MKLE 409

Query: 197 ESVLLWNVLINGC 209
            + ++W  L++GC
Sbjct: 410 PNAVIWGALLSGC 422


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 181/534 (33%), Positives = 288/534 (53%), Gaps = 62/534 (11%)

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           E D F    +   YV+    + A  +F+  PE++    ++ WN +++G ++ G++ +A E
Sbjct: 23  ERDLFSWNVMLTGYVRNRDLKTARALFERMPERD----IVSWNAMLSGYAQNGFVDEARE 78

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE-------------------------- 254
           +F  MP KN  SW  L+  +++ G ++ A  LFE                          
Sbjct: 79  IFYKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFD 138

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
            MP++  +SW+AMI G+SQNG +E+AL  F +M     R N  +   ALS C+ + ALE 
Sbjct: 139 NMPQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALEL 198

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G ++H  +    +     +G AL+ MY KCG+I+ A   F E  EKD+++W  MI G A 
Sbjct: 199 GRQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYAR 258

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           HG  E+A+  F+ M  +G  PD    +++L AC ++G V     +F SM  DY I   + 
Sbjct: 259 HGFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLV 318

Query: 435 HHTVVVNLLSRVGQDSQG--------YQNSQNSFTKLL--------------------QL 466
           H+T +V+LL R GQ  +         ++    ++  LL                    ++
Sbjct: 319 HYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM 378

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
           +P +   Y+LLS +YAA GRW D  ++R  M+ + +KK PG+S++EV   +H F+ G   
Sbjct: 379 EPHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTS 438

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTT 583
           H    +I++ LE++    +++GY+  T  V H+++EE K   L  HSEKLA+A+G++   
Sbjct: 439 HPHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIP 498

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            G  I+++K L +C DCH+ +KY SKI  R I+LRD  RFHYF+ G+CSCRD+W
Sbjct: 499 AGRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 105/202 (51%), Gaps = 22/202 (10%)

Query: 213 GYLRK-----AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
           GYLR      A +LF  MP++++ SW  ++ G++R  DLK A  LFE+MPE+ +VSW AM
Sbjct: 4   GYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWNAM 63

Query: 268 INGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           ++G++QNG  ++A  +F++M L  G+  N       L+A  + G +E   R+        
Sbjct: 64  LSGYAQNGFVDEAREIFYKMPLKNGISWNGL-----LAAYVQNGRIEDAKRL-------- 110

Query: 327 FGLKGAIGTALVDMYAKCGN-IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              +  +   LV      G  +     +F    ++D ++W+AMI G + +G  E+A+ +F
Sbjct: 111 --FESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFF 168

Query: 386 KKMMYSGTEPDGTVFLAILTAC 407
            +M       + + F   L+ C
Sbjct: 169 VEMQRDCERLNRSSFTCALSTC 190


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 197/618 (31%), Positives = 328/618 (53%), Gaps = 74/618 (11%)

Query: 60  FASSRITTQLISS----ASLHKSI---DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112
           F   R+  + ISS     +LH  +   D A++ F+    +++  +N +I G  +  +   
Sbjct: 202 FVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLR 261

Query: 113 CISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
            +  F  MLR S+  P+R T   V  + A+L  L +G+ +H  IV +G +    V   L 
Sbjct: 262 ALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALI 321

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
            MY + G    A ++ ++   K+                                   + 
Sbjct: 322 SMYSRCGGVETARRLIEQRGTKDL---------------------------------KIE 348

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
            + +L+DG+++ GD+ +A  +F  + ++ VV+WTAMI G+ Q+G   +A+ +F  M+  G
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
            R N +T+ + LS  + + +L  G ++H     +      ++  AL+ MYAK GNI +AS
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468

Query: 352 LVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             F   + E+D ++WT+MI  LA HG  E+A++ F+ M+  G  PD   ++ + +AC ++
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN------------- 455
           G V     +FD M+    I P++ H+  +V+L  R G  Q++Q +               
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 456 -------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                         + +  +LL L+P++  +Y  L+N+Y+A G+W++ A++R  M+   +
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 503 KKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+ G+S+IEV   VH F  E G H    EI+  ++ I    ++ GY+P T  VLH+++E
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEE 708

Query: 561 E-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E KE+ L  HSEKLA+AFGLI T   TT++I+K L +C DCH+ +K+ SK+  REI++RD
Sbjct: 709 EVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRD 768

Query: 620 -TRFHYFKDGTCSCRDYW 636
            TRFH+FKDG CSCRDYW
Sbjct: 769 TTRFHHFKDGFCSCRDYW 786



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 173/347 (49%), Gaps = 26/347 (7%)

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           SV L N L+N  SK GY   A +LF  MP +   SW +++  + ++GD+    E F+Q+P
Sbjct: 48  SVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLP 107

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           ++  VSWT MI G+   G+  KA+ +   M+  G+    FT+ + L++ A    +E G +
Sbjct: 108 QRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKK 167

Query: 318 VHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           VH++I     GL+G  ++  +L++MYAKCG+   A  VF     +D+ +W AMI   A+H
Sbjct: 168 VHSFIV--KLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMI---ALH 222

Query: 376 ---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
              G+ + A+  F++M     E D   + ++++     G    AL+ F  M  D  + P 
Sbjct: 223 MQVGQMDLAMAQFEQM----AERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPD 278

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                 V++  + + +   G Q   +  T    +      S ++L+ + +   R   V  
Sbjct: 279 RFTLASVLSACANLEKLCIGKQIHSHIVTTGFDI------SGIVLNALISMYSRCGGVET 332

Query: 493 VRTLMQRRSIK--KDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLED 537
            R L+++R  K  K  G++ + ++G++   + G    AK I   L+D
Sbjct: 333 ARRLIEQRGTKDLKIEGFTAL-LDGYI---KLGDMNQAKNIFVSLKD 375



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 155/369 (42%), Gaps = 69/369 (18%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           ++S+ S    +D     FD    ++   +  +I G      +   I     M++  + P 
Sbjct: 86  VLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPT 145

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
           + T   V  SVA+   +  G+ +H  IVK G+  +  V   L +MY + G    A  VFD
Sbjct: 146 QFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFD 205

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
               ++ S     WN +I    ++G +  A+  F  M ++++ +W S+I GF        
Sbjct: 206 RMVVRDISS----WNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGF-------- 253

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACA 307
                                  +Q G   +AL +F +ML D+ +  + FT+ S LSACA
Sbjct: 254 -----------------------NQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACA 290

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL--------------- 352
            +  L  G ++H++I    F + G +  AL+ MY++CG +E A                 
Sbjct: 291 NLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGF 350

Query: 353 ------------------VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
                             +F   K++D++ WTAMI G   HG Y +AI  F+ M+  G  
Sbjct: 351 TALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQR 410

Query: 395 PDGTVFLAI 403
           P+     A+
Sbjct: 411 PNSYTLAAM 419


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 177/463 (38%), Positives = 270/463 (58%), Gaps = 37/463 (7%)

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
            C  +G  RK   +F  M +K+V SW S++  + R GD++ A E+F + P K +V+WTAM
Sbjct: 189 ACGDVGAARK---VFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAM 245

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           + G++QN    KAL +F +M + G+  ++ ++  A+SACA++GAL     V        F
Sbjct: 246 VTGYAQNAMPVKALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGF 305

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
           G    +G+ LVDMYAKCG I+ AS VF   +EK++ T+++MI GLA HGR  +AI  FK+
Sbjct: 306 GNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKE 365

Query: 388 MM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           M+  +  EP+   F+ +LTAC ++G V     +F  M+  Y I PS  H+  +V+LL R 
Sbjct: 366 MVNRANVEPNHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRA 425

Query: 447 GQDSQGYQ-----------------------NSQNSFTK-----LLQLKPKHPSSYVLLS 478
           G   +                          + ++   K     L +L+P+   +YVLLS
Sbjct: 426 GLVDEALDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLS 485

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAG--GHKLAKEIHSKL 535
           NI A+ G+W++V++VR LM+++ +KKDP  S  E  +G VH+F AG   H    EI   L
Sbjct: 486 NILASAGKWEEVSKVRILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKAL 545

Query: 536 EDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
            +++A  + +GY+P    +++++  EEKE  L  HSEKLAL+FGL+    G TI+I+K L
Sbjct: 546 LELVAKLKLEGYVPILSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNL 605

Query: 595 TICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            IC DCH  M+  S++   EI++RD  RFH+FK+G CSC  +W
Sbjct: 606 RICDDCHLFMQLVSRVESVEIIVRDNMRFHHFKNGECSCGGFW 648


>gi|296085273|emb|CBI29005.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 174/418 (41%), Positives = 246/418 (58%), Gaps = 33/418 (7%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF +MP + VVSW +M+  ++Q G+  +ALA+F QM   GV+  + TVVS LSACA +GA
Sbjct: 170 LFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGA 229

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           L+ G+ +H YI+ N   +   +GTALVDMYAKCG I  A+ VF   + KD+L W  +I G
Sbjct: 230 LDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAG 289

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           +AIHG  ++A + FK+M  +G EP+   F+A+L+AC ++G V       D M   Y IEP
Sbjct: 290 MAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEP 349

Query: 432 SVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQNSFTKL 463
            V+H+  V++LL+R G   +                             ++  +    +L
Sbjct: 350 KVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRL 409

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           + L+P H   Y+LLSNIYAA  +W D  +VR LM+   I K PG S IE+ G VHRF AG
Sbjct: 410 INLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAG 469

Query: 524 --GHKLAKEIHSKLEDIMAGAREQ-GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGL 579
              H  + +I+ KL +I    +   G+   T  VL +++EE KE AL  HSEKLA+A+GL
Sbjct: 470 DWSHPESNKIYEKLNEIHTRLKSAIGHSADTGDVLLDMEEEDKEHALPVHSEKLAIAYGL 529

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +       I+IVK L +C DCH + K  SK+  REI++RD  RFH+F+DG CSC D+W
Sbjct: 530 LHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDGECSCLDFW 587



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 110/223 (49%), Gaps = 8/223 (3%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----N 229
           Y Q GK   A  +FD+        +      L++ C+ +G L K + L   +       N
Sbjct: 189 YAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVN 248

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +L+D + + G +  A ++F  M  K V++W  +I G + +G  ++A  +F +M +
Sbjct: 249 SIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKE 308

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI 347
           AGV  ND T V+ LSAC+  G ++ G ++ + +S + +G++  +     ++D+ A+ G +
Sbjct: 309 AGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS-SSYGIEPKVEHYGCVIDLLARAGLL 367

Query: 348 EAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
           E A  + G    E +     A++ G  IHG +E      K+++
Sbjct: 368 EEAMELIGTMPMEPNPCALGALLGGCRIHGNFELGEMVGKRLI 410



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 120/270 (44%), Gaps = 31/270 (11%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           D A  +F     +++  +N ++   A+       ++ F  M  + V+P   T   +  + 
Sbjct: 165 DDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSAC 224

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L  L  G  LH  I  + +E ++ V   L DMY + GK   A +VF+      +S+ V
Sbjct: 225 AHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM----ESKDV 280

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQ 255
           L WN +I G +  G++++A  LF  M +  V     ++V+++      G + +  +L + 
Sbjct: 281 LAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDC 340

Query: 256 MP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           M      E  V  +  +I+  ++ G  E+A+ +              T+    + CA +G
Sbjct: 341 MSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELI------------GTMPMEPNPCA-LG 387

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           AL  G R+H      +F L   +G  L+++
Sbjct: 388 ALLGGCRIH-----GNFELGEMVGKRLINL 412



 Score = 46.6 bits (109), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 2/132 (1%)

Query: 324 CNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           CN+ G+ KG +   + +     G  + A  +F E   +D+++W +M+   A  G+  +A+
Sbjct: 140 CNEVGVDKGVLKVWMHNNKNTFGKRDDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEAL 199

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F +M   G +P     +++L+AC + G +   L+    +  D  IE +    T +V++
Sbjct: 200 ALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYIN-DNRIEVNSIVGTALVDM 258

Query: 443 LSRVGQDSQGYQ 454
            ++ G+ S   Q
Sbjct: 259 YAKCGKISLATQ 270



 Score = 38.9 bits (89), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 6/192 (3%)

Query: 30  TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE  ++SL+ +      L +   +H  I  + +  +S + T L+   +    I  A  +F
Sbjct: 213 TEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 272

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    K++  +N +I G+A + H +     F  M    V PN +T+  +  + +   ++ 
Sbjct: 273 NAMESKDVLAWNTIIAGMAIHGHVKEAQRLFKEMKEAGVEPNDITFVAMLSACSHAGMVD 332

Query: 147 LGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSE-SVLLWN 203
            G+  L C+    G+E        + D+  + G    A ++    P E N      LL  
Sbjct: 333 EGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLGG 392

Query: 204 VLINGCSKIGYL 215
             I+G  ++G +
Sbjct: 393 CRIHGNFELGEM 404


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 204/673 (30%), Positives = 338/673 (50%), Gaps = 89/673 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA  +L N    +     L++  +    +  A ++FD F  K+L  +N +I  L++N
Sbjct: 207 KQVHA-FVLRNGDWRTFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQN 265

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV-KSGVEYDAFV 166
             F+  + +   ML+  VRPN +T   V  + + L +L  G+ +H  ++  + +  ++FV
Sbjct: 266 DRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFV 325

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
              L DMY    +      VFD    +    ++ +WN +I G  +  +  +A+ELF    
Sbjct: 326 GCALVDMYCNCKQPEKGRLVFDGMFRR----TIAVWNAMIAGYVRNEFDYEAIELFVEMV 381

Query: 223 ---GMMP--------------------KKNVASWV-------------SLIDGFMRKGDL 246
              G+ P                    K+ + S V             +L+D + R G +
Sbjct: 382 FELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRI 441

Query: 247 KKAGELFEQMPEKGVVSWTAMINGF---------------SQNGEAEKALAMFFQMLDA- 290
           + A  +F  M  K +VSW  MI G+                Q G+AE  +  F    D  
Sbjct: 442 EIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNK 501

Query: 291 --GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
              ++ N  T+++ L  CA + AL  G  +H Y          A+G+ALVDMYAKCG + 
Sbjct: 502 NFPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLN 561

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-----EPDGTVFLAI 403
            +  VF +   ++++TW  +I    +HG+ E+A++ F++M+  G       P+   ++AI
Sbjct: 562 LSRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAI 621

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------- 454
             +  +SG V   LN F +M+  + IEP+  H+  +V+LL R GQ  + Y          
Sbjct: 622 FASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNM 681

Query: 455 NSQNSFTKLLQLKPKHPS---SYVLLSNIYAAEGRWKDVARVRTL----MQRRSIKKDPG 507
              ++++ LL     H +     +   N++  +    D    +++    M+ + ++K+PG
Sbjct: 682 KKVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDPNVLDYGTKQSMLGRKMKEKGVRKEPG 741

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA 565
            S+IE    VH+F AG   H  +KE+H  LE +    +++GY+P T  VLHN+ EE++E 
Sbjct: 742 CSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSCVLHNVGEEEKET 801

Query: 566 LGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
           + C HSE+LA+AFGL+ T+PGTTI++ K L +C DCH   K+ SKI  REI+LRD  RFH
Sbjct: 802 MLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVDREIILRDVRRFH 861

Query: 624 YFKDGTCSCRDYW 636
           +F++GTCSC DYW
Sbjct: 862 HFRNGTCSCGDYW 874



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 155/342 (45%), Gaps = 45/342 (13%)

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           +S F   IS +  M+   V P+   +P V K+ A +  L+LG+ LH  + K G      V
Sbjct: 63  SSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAV 122

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L +MY + G    A +VFDE   ++     + WN +IN   +      AV LF +M 
Sbjct: 123 PNSLVNMYGKCGDIDAARRVFDEITNRDD----VSWNSMINAACRFEEWELAVHLFRLML 178

Query: 227 KKNVA-----------SWVSLIDGF----------MRKGDLK------------------ 247
            +NV            +  +LI+G           +R GD +                  
Sbjct: 179 LENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAKLGRVY 238

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           +A  LF+   +K +VSW  +I+  SQN   E+AL     ML +GVR N  T+ S L AC+
Sbjct: 239 EAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACS 298

Query: 308 KVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
            +  L  G  +H ++  N+  ++ + +G ALVDMY  C   E   LVF     + +  W 
Sbjct: 299 HLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWN 358

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTAC 407
           AMI G   +    +AI+ F +M++  G  P+     ++L AC
Sbjct: 359 AMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPAC 400



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 183/425 (43%), Gaps = 47/425 (11%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI+  TN+ ++  P +N     ++            +Q+HA +        + +   L++
Sbjct: 69  AISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVN 128

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
                  ID A  +FD  T ++   +N +I        ++  +  F  ML  +V P   T
Sbjct: 129 MYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSFT 188

Query: 132 YPFVSKSVASL-SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
              V+ + ++L + L LG+ +H  ++++G ++  F    L  MY +LG+   A  +FD  
Sbjct: 189 LVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLFDVF 247

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKA----------------VELFGMMPK------- 227
            +K+    ++ WN +I+  S+     +A                V L  ++P        
Sbjct: 248 DDKD----LVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEML 303

Query: 228 ---KNVASWV--------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
              K + ++V              +L+D +      +K   +F+ M  + +  W AMI G
Sbjct: 304 GCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 271 FSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           + +N    +A+ +F +M+ + G+  N  T+ S L AC +  +      +H+ +    F  
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEK 423

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +  AL+DMY++ G IE A  +FG    KD+++W  MI G  + GR++ A+     M 
Sbjct: 424 DKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQ 483

Query: 390 YSGTE 394
               E
Sbjct: 484 RGQAE 488



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 73/145 (50%), Gaps = 1/145 (0%)

Query: 264 WTAMINGFSQNGEA-EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           W + +   +Q+     +A++ +  M+ AGV  ++F   + L A A +  L  G ++H ++
Sbjct: 52  WVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHV 111

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
                 L  A+  +LV+MY KCG+I+AA  VF E   +D ++W +MI        +E A+
Sbjct: 112 FKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAV 171

Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC 407
             F+ M+     P     +++  AC
Sbjct: 172 HLFRLMLLENVGPTSFTLVSVAHAC 196



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/321 (21%), Positives = 124/321 (38%), Gaps = 38/321 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N++T + ++       S      IH+ ++         +   L+   S    I+ A SIF
Sbjct: 389 NSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIF 448

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR------------------LSVRPN 128
                K++  +N +I G          ++    M R                    ++PN
Sbjct: 449 GSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPN 508

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T   V    A+L+ L  G+ +H   VK  +  D  V   L DMY + G    +  VF+
Sbjct: 509 SVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFE 568

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---------KKNVASWVSLIDG 239
           +   +N    V+ WNVLI      G   +A++LF  M          + N  +++++   
Sbjct: 569 QMSVRN----VITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFAS 624

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTA-----MINGFSQNGEAEKALAMFFQMLDAGVRA 294
               G + +   LF  M  K  +  T+     +++   ++G+ E+A  +   M     + 
Sbjct: 625 LSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKV 684

Query: 295 NDFTVVSALSACAKVGALEAG 315
           + ++  S L AC     LE G
Sbjct: 685 DAWS--SLLGACKIHQNLEIG 703


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 207/609 (33%), Positives = 311/609 (51%), Gaps = 76/609 (12%)

Query: 100 LIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158
           +I G  +NS F+  I  F  M L    R +  T   V  +VA L  L LG  + CL +K 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           G      +   L  ++ + G+   A  +F E  +K+    ++  N +I+G +  G    +
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKD----LISCNAMISGFTCNGETEDS 116

Query: 219 VELF----------------GMMP-------------------KKNVASWVS----LIDG 239
           V LF                G++P                   K  + S  S    L   
Sbjct: 117 VRLFKELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTV 176

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + R  ++  A +LF++  EK + SW AMI+G +QNG  + A+++F  M    V  N  TV
Sbjct: 177 YCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTV 236

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            S LSACA++GAL  G  VH+ I  N F     + TAL+DMYAKCG+I  A  +F    E
Sbjct: 237 TSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPE 296

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           K+ +TW AMI G  +HG  ++A++ F  M+ S  +P G  FL++L AC ++G VK     
Sbjct: 297 KNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGI 356

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------------ 455
           F +M  D+  EP  +H+  +V++L R GQ  +  +                         
Sbjct: 357 FHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHK 416

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               +  +  KL +L P++   YVL+SNIY+ E ++   A VR + +++ + K PG + I
Sbjct: 417 DTNLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLI 476

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGC 568
           E+    H F +G   H  +K I+++L+ +     E G+   T  VLH+++EE KE  +  
Sbjct: 477 EIGQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKV 536

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKD 627
           HSEKLA+AFGLI T PG  I+I+K L +C DCH+  K+ SKI++R IV+RD  RFH+FKD
Sbjct: 537 HSEKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKD 596

Query: 628 GTCSCRDYW 636
           G CSC DYW
Sbjct: 597 GLCSCGDYW 605



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 116/247 (46%), Gaps = 13/247 (5%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IH   +   + + S ++T L +       + +A  +FD    K L  +N +I G  +N  
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGL 213

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
             + IS F  M + +V PN +T   +  + A +  LSLG  +H LI  +  E + +V   
Sbjct: 214 TDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTA 273

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L DMY + G    A ++FD  PEKN+    + WN +I+G    G+ ++A++LF  M   +
Sbjct: 274 LIDMYAKCGSITVARELFDLMPEKNE----VTWNAMISGYGLHGHGQEALKLFYDMLSSS 329

Query: 230 VA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
           V     +++S++      G +K+   +F  M      E     +  M++   + G+ +KA
Sbjct: 330 VKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKA 389

Query: 281 LAMFFQM 287
           L     M
Sbjct: 390 LEFIKAM 396



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 5/211 (2%)

Query: 1   MKGHVFNRLT-TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G   N LT  AI+    ++ ++   N +T T I+S      +      +H+ I  +  
Sbjct: 205 ISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRF 264

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
            ++  ++T LI   +   SI  A  +FD    KN   +N +I G   + H Q  +  F  
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYD 324

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLG 178
           ML  SV+P  LT+  V  + +   L+  G G+ H ++   G E  A     + D+  + G
Sbjct: 325 MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAG 384

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
           + + A +     P +       +W  L+  C
Sbjct: 385 QLKKALEFIKAMPVEPGPP---VWGALLGAC 412


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  323 bits (828), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 214/661 (32%), Positives = 337/661 (50%), Gaps = 77/661 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IHA I+  N F    ++  LI+  +    ++ A  +F     K+   +N L+ G+ +N
Sbjct: 271 RGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQN 330

Query: 108 SHFQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
             +   I+HF  M     +P++++    ++ S  S +LL+ G  +H   +K G++ +  +
Sbjct: 331 DMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLA-GMEVHAYAIKHGIDSNMHI 389

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-------IGYLRKA- 218
              L DMY +    +     F+  PEK+    ++ W  +I G ++       +  LRK  
Sbjct: 390 GNSLIDMYGKCCCVKYMGSAFEYMPEKD----LISWTTIIAGYAQNECHLDALNLLRKVQ 445

Query: 219 ---VELFGMMPKKNVASWVSL--------IDGFMRKGDLKKA----------GEL----- 252
              +++  MM    + +   L        I G++ KG L             GEL     
Sbjct: 446 LEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGLADILIQNAIVNVYGELALVDY 505

Query: 253 ----FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
               FE +  K +VSWT+MI     NG A +AL +F  +++  +  +  T+VS L A A 
Sbjct: 506 ARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAA 565

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + +L+ G  +H ++    F L+G I  +LVDMYA+CG +E A  +F   K++DL+ WT+M
Sbjct: 566 LSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLILWTSM 625

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I    +HG  + AI  F KM      PD   FLA+L AC +SG V      F+ M+ +Y 
Sbjct: 626 INANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMKNEYK 685

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SF 460
           +EP  +H+  +V+LL+R     + Y   +N                            + 
Sbjct: 686 LEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLGEVAA 745

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            KLLQL  ++  +YVL+SN +AA+GRW DV  VR++M+   +KK PG S+IEV   +H F
Sbjct: 746 KKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENKIHTF 805

Query: 521 EA--GGHKLAKEIHSKLEDIMAGAREQ-GYMPGTEWVLHNI-KEEKEEALGCHSEKLALA 576
            A    H     I+ KL       +E+ GY   T+ V H++ +EEK + L  HSE+LAL 
Sbjct: 806 MARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSERLALG 865

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           +GL+ T+ GT ++I K L IC DCH+  K AS+ISQR +V+RD +RFH+F+ G CSC D+
Sbjct: 866 YGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCSCGDF 925

Query: 636 W 636
           W
Sbjct: 926 W 926



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 152/348 (43%), Gaps = 47/348 (13%)

Query: 102 RGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           R ++    FQS    F   L  + R P +  Y    +  AS   L  G+ LH   +K+  
Sbjct: 18  RPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQN 77

Query: 161 EYDA-FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
             D+ F+      MY + G    A KVFD+  E+    ++  WN +I  C   G   +A+
Sbjct: 78  YLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSER----TIFTWNAMIGACVSAGRYVEAI 133

Query: 220 ELF-----------------------------------GMMPKKNVASWV----SLIDGF 240
           EL+                                   G+  K     +V    +LI  +
Sbjct: 134 ELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMY 193

Query: 241 MRKGDLKKAGELFEQ--MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + GDL  A  LF+   M +   VSW ++I+     GE+ +AL++F +M + GV +N +T
Sbjct: 194 AKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYT 253

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
            VSAL AC     ++ G  +H  I  ++      +  AL+ MYA CG +E A  VF    
Sbjct: 254 FVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML 313

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            KD ++W  ++ G+  +  Y  AI +F+ M  SG +PD    L ++ A
Sbjct: 314 FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAA 361



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 173/417 (41%), Gaps = 44/417 (10%)

Query: 32  THIISLIHSSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           +  + L  S  +  Q +Q+HA  +   N   S  + T+ +       S   A+ +FD  +
Sbjct: 50  SQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMS 109

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            + +  +N +I        +   I  +  M  L V  +  T+P V K+  +     LG  
Sbjct: 110 ERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCE 169

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE-TPEKNKSESVLLWNVLINGC 209
           +H + VK G     FV   L  MY + G   GA  +FD    EK+   S   WN +I+  
Sbjct: 170 IHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVS---WNSIISAH 226

Query: 210 SKIGYLRKAVELFGMMPKKNVAS------------------------------------- 232
              G   +A+ LF  M +  V S                                     
Sbjct: 227 VGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDV 286

Query: 233 WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
           +VS  LI  +   G ++ A  +F+ M  K  VSW  +++G  QN     A+  F  M D+
Sbjct: 287 YVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDS 346

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G + +  +V++ ++A  +   L AG+ VH Y   +       IG +L+DMY KC  ++  
Sbjct: 347 GQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYM 406

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
              F    EKDL++WT +I G A +  +  A+   +K+     + D  +  +IL AC
Sbjct: 407 GSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLAC 463



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 5/188 (2%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S K +++IH  ++   L A   I   +++       +DYA  +F+    K++  +  +I 
Sbjct: 468 SEKLIKEIHGYVLKGGL-ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMIT 526

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
               N      +  F  ++  ++ P+ +T   V  + A+LS L  G+ +H  +++ G   
Sbjct: 527 CCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFL 586

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           +  +   L DMY + G    A  +F+   +++    ++LW  +IN     G  + A++LF
Sbjct: 587 EGLIANSLVDMYARCGTMENARNIFNYVKQRD----LILWTSMINANGMHGCGKDAIDLF 642

Query: 223 GMMPKKNV 230
             M  +NV
Sbjct: 643 SKMTDENV 650


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 194/622 (31%), Positives = 324/622 (52%), Gaps = 67/622 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +++H  II   +     ++  LI+       I  AL++F+    ++   +  ++    + 
Sbjct: 23  KKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHRDPISWASILTANNQA 82

Query: 108 SHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           +     +S F  M +   ++P+   +  + K+ A L  +  G+ +H   + S V  D  V
Sbjct: 83  NLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQVHATFIVSPVSDDDVV 142

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
           +  L DMY + G       VFD    KN     + W  +I+G ++ G    A++LF  MP
Sbjct: 143 KSSLVDMYAKCGLPDIGRVVFDSISSKNS----ISWTAMISGYAQSGRKLDAIQLFQKMP 198

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            KN+ SW +LI G ++ G+   +  LF +M  KG+                         
Sbjct: 199 VKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI------------------------D 234

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           ++D       F + S + A A +  L  G ++H  +    +     +  ALVDMYAKC +
Sbjct: 235 IVDP------FILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSD 288

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           + AA  +FG   ++D+++WT++I G A HG  E+A+  + +M+ +G +P+   F+ ++ A
Sbjct: 289 VLAAKKIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYA 348

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------YQNSQN 458
           C + G V     FF+SM  DY I PS++H+T +++LLSR G   +         ++  + 
Sbjct: 349 CSHVGLVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEA 408

Query: 459 SFTK--------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
           ++                      LL LKP+ PS+Y+LLSNIYA+   W+ V++VR LM 
Sbjct: 409 TWAALLSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMA 468

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
              +KK+PG+S I +      F AG   H   +EI   LE++ A  +++GY+P T  VLH
Sbjct: 469 AMEVKKEPGYSCIVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLH 528

Query: 557 NI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           ++ ++EKE  L  HSE+LA+A+GL++  PG  + IVK L +CGDCH+++K+ S I +REI
Sbjct: 529 DLEQQEKERQLFWHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREI 588

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
           V+RD  R+H+FKDG CSC ++W
Sbjct: 589 VVRDANRYHHFKDGKCSCNNFW 610



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 18/215 (8%)

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +V  L ACA+  +   G ++H +I         ++   L++MY KCG I+ A  +F +  
Sbjct: 6   LVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLP 65

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLAL 417
            +D ++W +++            +  F  M    G +PD  VF  ++ AC   G +K   
Sbjct: 66  HRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQG- 124

Query: 418 NFFDSMRFDYFIEPSVKHHTV---VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474
                +   + + P      V   +V++ ++ G    G             +  K+  S+
Sbjct: 125 ---KQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGR-------VVFDSISSKNSISW 174

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
             + + YA  GR  D  +   L Q+  +K    W+
Sbjct: 175 TAMISGYAQSGRKLDAIQ---LFQKMPVKNLLSWT 206


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 206/628 (32%), Positives = 321/628 (51%), Gaps = 114/628 (18%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV------- 175
           L +RP+ ++   V  + AS+   S G+ +H   ++SG+  D FV   + DMY        
Sbjct: 244 LGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEE 303

Query: 176 ------------------------QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
                                   Q+G+   A  +F++  E+    +V+ W+ +I G ++
Sbjct: 304 ANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQ 363

Query: 212 IGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDL--------------------- 246
            G   +A+++F  M     + NV + VSL+ G    G L                     
Sbjct: 364 RGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDEND 423

Query: 247 ---------------------KKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAM 283
                                K A  +F+ +P  ++ VV+WT +I G +Q+GEA +AL +
Sbjct: 424 PGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALEL 483

Query: 284 FFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDM 340
           F QML  D  V  N FT+  AL ACA++GAL  G ++H Y+  N F      +   L+DM
Sbjct: 484 FSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDM 543

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y+K G+++AA +VF    +++ ++WT+++ G  +HGR E+A+Q F +M      PDG  F
Sbjct: 544 YSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTF 603

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------- 452
           + +L AC +SG V   +N+F+ M  D+ + P  +H+  +V+LLSR G+  +         
Sbjct: 604 VVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMP 663

Query: 453 -----------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                            Y N    + +  +LL+L+  +  SY LLSNIYA    WKDVAR
Sbjct: 664 MKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCWKDVAR 723

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           +R LM+   IKK PG S+++       F AG   H ++++I+  L D+M   +  GY+P 
Sbjct: 724 IRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPD 783

Query: 551 TEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
             + LH++  EEK + L  HSEKLALA+G++ T PG  I+I K L  CGDCHS   Y S 
Sbjct: 784 NRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAFTYISI 843

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I + EI++RD +RFH+FK+G+CSCR YW
Sbjct: 844 IIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 143/578 (24%), Positives = 232/578 (40%), Gaps = 103/578 (17%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL 75
           TT   S+   + ++T T    L H   S       H Q+++  L       T +IS    
Sbjct: 37  TTFFFSTASSTTDLTST----LFHQCKSLASAELTHQQLLVQGL---PHDPTHIISMYLT 89

Query: 76  HKSIDYALSIFDHFTPKNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
             S   ALS+     P +  +F  N LIR        +  +  +  M RL  RP+  T+P
Sbjct: 90  FNSPAKALSVLRRLHPSSHTVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFP 149

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           FV K+   +     G  +H ++  SG E++ FV   L  MY + G    A +VFDE  E+
Sbjct: 150 FVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRER 209

Query: 194 NKSESVLLWNVLING-----------------CSKIGYLRKAVELFGMMPK-KNVASWV- 234
              + ++ WN ++                      +G    AV L  ++P   +V +W  
Sbjct: 210 GVGD-LVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSR 268

Query: 235 ---------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                                +++D + + G +++A ++FE+M  K VVSW AM+ G+SQ
Sbjct: 269 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328

Query: 274 NGEAEKALAM-----------------------------------FFQMLDAGVRANDFT 298
            G  + AL +                                   F QML  G   N  T
Sbjct: 329 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVT 388

Query: 299 VVSALSACAKVGALEAGVRVHNY-------ISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           +VS LS CA  G L  G   H +       +  ND G    +  AL+DMY+KC + +AA 
Sbjct: 389 LVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 448

Query: 352 LVFG--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT-ACW 408
            +F     K++ ++TWT +I G A HG   +A++ F +M+    +PD  V     T +C 
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQML----QPDNFVMPNAFTISCA 504

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTV-VVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
                +L    F      Y +    +   + V N L  +   S     ++  F  + Q  
Sbjct: 505 LMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQ-- 562

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            ++  S+  L   Y   GR ++  ++   MQ+  +  D
Sbjct: 563 -RNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPD 599


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 210/675 (31%), Positives = 340/675 (50%), Gaps = 96/675 (14%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q R IH+ +    L  +  ++T L S+ +    +D A  +FD    +++  +N ++   
Sbjct: 242 RQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAY 301

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           A++ H       F  ML   + P+++T    S   +SL     GR +H   ++ G++ D 
Sbjct: 302 AQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSSLRF---GRMIHACALEKGLDRDI 358

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-- 222
            +   L DMY + G    A  +F+  P    S     WN +I G S+ G +++A+ELF  
Sbjct: 359 VLGNALLDMYTRCGSPEEARHLFEGIPGNAVS-----WNTMIAGSSQKGQMKRALELFQR 413

Query: 223 ----GMMPKKNVASWVSLIDG--------------------------------------- 239
               GM P +  A++++L++                                        
Sbjct: 414 MQLEGMAPVR--ATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKM 471

Query: 240 FMRKGDLKKAGELFEQ--MPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           +   G + +A   F++  M ++  VVSW A+I+  SQ+G  ++AL  F +M   GV  N 
Sbjct: 472 YASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQ 531

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
            T V+ L ACA   AL  GV VH+++  +       + TAL  MY +CG++E+A  +F +
Sbjct: 532 ITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATALASMYGRCGSLESAREIFEK 591

Query: 357 TK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              E+D++ + AMI   + +G   +A++ F +M   G+ PD   F+++L+AC + G    
Sbjct: 592 VAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLADE 651

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQ---------------------- 451
               F SMR  Y I PS  H+   V++L R G   D++                      
Sbjct: 652 GWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLGAC 711

Query: 452 -GYQNSQ-----NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
             Y++       NS  +  +L P   S+YV+LSNI A  G+W + A VRT M+ R ++K 
Sbjct: 712 RKYRDVDRGRLANSMVR--ELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLRKQ 769

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKE 563
            G S+IE+   VH F AG   H  ++EI+ +LE + A  RE GY+P T  VL  + E ++
Sbjct: 770 AGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEAEK 829

Query: 564 EALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           E L C HSE+LA+A G++ ++   T++++K L +C DCH+  K+ SKI  +EIV+RDT R
Sbjct: 830 ERLLCQHSERLAIALGVMSSST-DTVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDTHR 888

Query: 622 FHYFKDGTCSCRDYW 636
           FH+F DG+CSC DYW
Sbjct: 889 FHHFVDGSCSCGDYW 903



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 119/445 (26%), Positives = 207/445 (46%), Gaps = 53/445 (11%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q R IHA I+   L   S +   L+        +  A+ +F+    ++L  +N  I   A
Sbjct: 146 QGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANA 204

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           ++      +  F  M    VRP R+T      +++  + +   R +H ++ +SG+E    
Sbjct: 205 QSGDLDMALELFQRMQLEGVRPARITLVI---TLSVCAKIRQARAIHSIVRESGLEQTLV 261

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
           V   LA  Y +LG    A +VFD   E++    V+ WN ++   ++ G++ +A  LF   
Sbjct: 262 VSTALASAYARLGHLDQAKEVFDRAAERD----VVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 223 ---GMMPKK----NVASWVS--------------------------LIDGFMRKGDLKKA 249
              G+ P K    N ++  S                          L+D + R G  ++A
Sbjct: 318 LHEGIPPSKVTLVNASTGCSSLRFGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEA 377

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-- 307
             LFE +P    VSW  MI G SQ G+ ++AL +F +M   G+     T ++ L A A  
Sbjct: 378 RHLFEGIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASN 436

Query: 308 --KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF--GETKEK-DL 362
             +  A+  G ++H+ I    +  + AIGTA+V MYA CG I+ A+  F  G  +++ D+
Sbjct: 437 PEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDV 496

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++W A+I  L+ HG  ++A+ +F++M   G  P+    +A+L AC  +  +   +   D 
Sbjct: 497 VSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDH 556

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVG 447
           +R    +E +V   T + ++  R G
Sbjct: 557 LRHS-GMESNVFVATALASMYGRCG 580



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 194/424 (45%), Gaps = 53/424 (12%)

Query: 25  PSNNITET---HIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           PS++   T   H++ L+ ++   +   Q R+IHA+I+  +L     +   L+      +S
Sbjct: 20  PSSSSGATRPAHLVRLLRAAGDDRLLSQGRRIHARIV--SLGLEEELGNHLLRLYLKCES 77

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +     +F     ++   +  +I    E+   +  I  F  M +  VR + +T+  V K+
Sbjct: 78  LGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKA 137

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L  LS GR +H  IV+SG+E  + +   L  +Y   G    A  +F E  E++    
Sbjct: 138 CARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLF-ERMERD---- 192

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMP-------------------------- 226
           ++ WN  I   ++ G L  A+ELF      G+ P                          
Sbjct: 193 LVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIVR 252

Query: 227 ----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
               ++ +    +L   + R G L +A E+F++  E+ VVSW AM+  ++Q+G   +A  
Sbjct: 253 ESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAAL 312

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +ML  G+  +  T+V+A + C+   +L  G  +H             +G AL+DMY 
Sbjct: 313 LFARMLHEGIPPSKVTLVNASTGCS---SLRFGRMIHACALEKGLDRDIVLGNALLDMYT 369

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           +CG+ E A  +F E    + ++W  MI G +  G+ ++A++ F++M   G  P    +L 
Sbjct: 370 RCGSPEEARHLF-EGIPGNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLN 428

Query: 403 ILTA 406
           +L A
Sbjct: 429 LLEA 432



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 143/323 (44%), Gaps = 51/323 (15%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           + RP  L      ++     LLS GR +H  IV  G+E +  +  HL  +Y++       
Sbjct: 26  ATRPAHLVRLL--RAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDV 81

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG 239
            +VF     ++++     W  +I   ++ G  ++A+ +F  M ++ V     ++++++  
Sbjct: 82  EEVFSRLEVRDEAS----WTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKA 137

Query: 240 FMRKGDLKK-----------------------------------AGELFEQMPEKGVVSW 264
             R GDL +                                   A  LFE+M E+ +VSW
Sbjct: 138 CARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSW 196

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A I   +Q+G+ + AL +F +M   GVR    T+V  LS CAK+    A   +H+ +  
Sbjct: 197 NAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARA---IHSIVRE 253

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +       + TAL   YA+ G+++ A  VF    E+D+++W AM+   A HG   +A   
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
           F +M++ G  P     +   T C
Sbjct: 314 FARMLHEGIPPSKVTLVNASTGC 336



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +V  L A      L  G R+H  I     GL+  +G  L+ +Y KC ++     VF   +
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D  +WT +I     HG+ ++AI  F +M   G   D   FLA+L AC   G +    +
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLL 443
                   + +E  ++  +V+ NLL
Sbjct: 150 I-----HAWIVESGLEGKSVLANLL 169


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  323 bits (827), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 213/684 (31%), Positives = 342/684 (50%), Gaps = 116/684 (16%)

Query: 28  NITETHIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           N T+    +L+ + +S K   Q +Q+HAQI+  +L + S ++T L   ++L+   D +L 
Sbjct: 2   NTTQNLCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHD-SLL 60

Query: 85  IFDHF-TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           IF+   +P     +  +IR    +  F   +S F+ ML     P+   +P V KS   + 
Sbjct: 61  IFNSLPSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMK 120

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ---LGKTRGAFKVFDETPEKNKSESVL 200
            L  G  +H  I++ G+ +D +    L +MY +   L +     KVFDE     K+  V 
Sbjct: 121 DLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDE----GKTSDV- 175

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
                        Y +K  E + +                   G L+K   +FE MP++ 
Sbjct: 176 -------------YSKKEKESYYL-------------------GSLRK---VFEMMPKRD 200

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW  +I+G +QNG  E AL M  +M +A +R + FT+ S L   A+   L  G  +H 
Sbjct: 201 IVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHG 260

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y   N +     IG++L+DMYAKC  ++ +  VF    + D ++W ++I G   +G +++
Sbjct: 261 YAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDE 320

Query: 381 AIQYFKKMMYS------------------------------------GTEPDGTVFLAIL 404
            +++F++M+ +                                    G +P+   F+A+L
Sbjct: 321 GLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNYVAFMAVL 380

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------- 455
           TAC ++G V  A  +F+SM  DY I P ++H+  V +LL RVG+  + Y+          
Sbjct: 381 TACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPT 440

Query: 456 -------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                              ++    KL  + P++  +YVLLSNIY+A GRWKD  ++R  
Sbjct: 441 GSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIA 500

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
           M+ + +KK P  S+IE+   VH F AG   H     I+  L+ ++     +GY+  T  V
Sbjct: 501 MRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEV 560

Query: 555 LHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           LH+++EE++  L C HSE+LA+ FG+I T  GTTI++ K L +C DCH+  K+ SKI  R
Sbjct: 561 LHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGR 620

Query: 614 EIVLRD-TRFHYFKDGTCSCRDYW 636
           EIV+RD +RFH+FKDG CSC D+W
Sbjct: 621 EIVVRDNSRFHHFKDGKCSCGDFW 644


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 202/643 (31%), Positives = 328/643 (51%), Gaps = 75/643 (11%)

Query: 65   ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
            + + LI + S+   +  A  +FD    K+   +  ++   +EN   ++ +  F  M    
Sbjct: 568  VGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAV 627

Query: 125  VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
             + N      V ++   LS + LG+G+H   VK+  + +  V   L DMY + G    A 
Sbjct: 628  SKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDAR 687

Query: 185  KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------ 232
              F    E   ++ V+LW+++I+  ++     +A ELF  M + +V+             
Sbjct: 688  LAF----EMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQAC 743

Query: 233  ---------------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                         +LID + +  D++ + E+F  + +   VSW 
Sbjct: 744  ANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWN 803

Query: 266  AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
             +I G+S++G  E AL++F +M  A V +   T  S L ACA   ++    +VH  I  +
Sbjct: 804  TIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKS 863

Query: 326  DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
             F     +  +L+D YAKCG I  A  +F   KE DL++W A+I G A+HG+   A + F
Sbjct: 864  TFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELF 923

Query: 386  KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
              M  +  + +   F+A+L+ C  +G V   L+ FDSMR D+ IEPS++H+T +V LL R
Sbjct: 924  DMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGR 983

Query: 446  VGQ--DSQGY--------------------------QNSQNSFTKLLQLKPKHPSSYVLL 477
             G+  D+  +                          +  + S  K+L+++P+  ++YVLL
Sbjct: 984  AGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLL 1043

Query: 478  SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
            SN+Y+A G    VA  R  M+   ++K+PG S++E+ G VH F  G   H   + I++ L
Sbjct: 1044 SNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAML 1103

Query: 536  EDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
            E +   A  +GY+P T+ VLH+++EE K   L  HSE+LALA+GL+ T PG  I+I+K L
Sbjct: 1104 EWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPIRIMKNL 1163

Query: 595  TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
              C DCH++ K  SKI ++EI++RD  RFH+F++GTCSC DYW
Sbjct: 1164 RSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 129/301 (42%), Gaps = 45/301 (14%)

Query: 148 GRGLHCLIVKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           GR +H  +V+SG     D F    L +MY ++G    A +VFD  PE+N    V     L
Sbjct: 447 GRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFV----TL 502

Query: 206 INGCSKIGYLRKAVELFGMMP--------------------------------------- 226
           + G +  G   +A  LF  +                                        
Sbjct: 503 VQGHALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGH 562

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            +N     +LID +   G +  A  +F+ +  K  V+WTAM++ +S+N   E  L +F +
Sbjct: 563 DRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSK 622

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M  A  + N F + S L A   + ++  G  +H       +  +  +  AL+DMYAKCGN
Sbjct: 623 MRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGN 682

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           IE A L F      D++ W+ MI   A   + EQA + F +MM S   P+     ++L A
Sbjct: 683 IEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQA 742

Query: 407 C 407
           C
Sbjct: 743 C 743



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 109/246 (44%), Gaps = 33/246 (13%)

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW--NVLINGCSKIGYLRKAVE 220
           D++    L    V  G  RG   V            + L+  NVL+N  +K+G    A  
Sbjct: 427 DSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHR 486

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           +F  +P++N+ S+V+L+ G   +G+ ++A  LF+++  +G       +N F      +  
Sbjct: 487 VFDGLPERNMVSFVTLVQGHALRGEFEEASALFQRLRWEG-----HEVNQFVLTTVLKLV 541

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           +AM    L  GV A          AC K+G        H+    N F     +G+AL+D 
Sbjct: 542 VAMDTLGLAWGVHA---------CAC-KLG--------HDR---NAF-----VGSALIDA 575

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y+ CG +  A  VF     KD + WTAM+   + +   E  +Q F KM  + ++ +    
Sbjct: 576 YSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFAL 635

Query: 401 LAILTA 406
            ++L A
Sbjct: 636 TSVLRA 641



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 108/243 (44%), Gaps = 13/243 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIH   I     +   +   LI   +    ++ +L IF      N   +N +I G +++
Sbjct: 753 KQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKS 812

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              ++ +S F  M   SV   ++TY  V ++ AS + ++    +HCLI KS    D  V 
Sbjct: 813 GFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVS 872

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L D Y + G  R A ++F    E  K   ++ WN +I+G +  G    A ELF MM K
Sbjct: 873 NSLIDSYAKCGCIRDAREIF----ETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSK 928

Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAE 278
            ++     ++V+L+      G + +   LF+ M      E  +  +T ++    + G   
Sbjct: 929 NSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLN 988

Query: 279 KAL 281
            AL
Sbjct: 989 DAL 991



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 116/288 (40%), Gaps = 25/288 (8%)

Query: 19   IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
            ++++  PS  +T + ++    S+ S   + Q+H  I      + + ++  LI S +    
Sbjct: 825  MRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGC 884

Query: 79   IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
            I  A  IF+     +L  +N +I G A +         F  M + S++ N +T+  +   
Sbjct: 885  IRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSV 944

Query: 139  VASLSLLSLGRGL-HCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
              S  L+S G  L   + +  G+E     Y   VR     +  + G+   A     + P 
Sbjct: 945  CGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVR-----LLGRAGRLNDALNFIGDIP- 998

Query: 193  KNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
               + S ++W  L++ C     +   R + E    +  ++  ++V L + +   G L + 
Sbjct: 999  --SAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLDQV 1056

Query: 250  GELFEQMPEKGV-----VSWTAM---INGFSQNGEAEKALAMFFQMLD 289
                + M   GV     +SW  +   ++ FS   E    + +   ML+
Sbjct: 1057 AFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMRVINAMLE 1104


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  323 bits (827), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 173/468 (36%), Positives = 272/468 (58%), Gaps = 36/468 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR----KGDLKKAGELFEQMPEKG 260
           ++  C K+  L +  EL   + K  +     L++G ++     G +  A  +F++MPE  
Sbjct: 113 VLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPD 172

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
             SW+ M++G++QNG+A +AL +F +M    V ++ FT+ S +  C  +GAL+ G  VH+
Sbjct: 173 SASWSTMVSGYAQNGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHS 232

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y+      +   +GTALV MY+KCG+++ A  VF    E+D+  W+ MI G AIHG  E+
Sbjct: 233 YMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEK 292

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+Q F  M  S T P+   F ++L+AC +SG V+     F++M  +Y I P +KH+  +V
Sbjct: 293 ALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 352

Query: 441 NLLSRVGQ---------------------------DSQGYQN-SQNSFTKLLQLKPKHPS 472
           +L  R G                             + GY++  ++   K+L+L P  P 
Sbjct: 353 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPE 412

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           +YVL+SN+YA+ GRW  V +VR+LM+ ++ KK  GWS IE+N  VH+F  G   H   ++
Sbjct: 413 NYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPEREK 472

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I+  L  +    ++ G++  T  VLH+I +EEKE ALG HSE+LA+A+GL+ T  G+ I+
Sbjct: 473 IYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIR 532

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH ++K  S++  REI++RD  RFH+F++  CSC DYW
Sbjct: 533 IVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 187/414 (45%), Gaps = 50/414 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTP 91
           +++ I        L+ I A ++  NL   + +T++LI  S+ +L   + YA  IF     
Sbjct: 10  LVAAIKRCTRVGDLKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHH 69

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            NL ++N +IRG + +    + I+ +  M    + PN  T+ FV K+   L  L  G+ L
Sbjct: 70  PNLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQEL 129

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  IVK G++++  +   L  +Y   G    A  +FDE PE + +     W+ +++G ++
Sbjct: 130 HSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSAS----WSTMVSGYAQ 185

Query: 212 IGYLRKAVELFGMMPKKNVAS----------------------WV--------------- 234
            G   +A++LF  M  +NV+S                      WV               
Sbjct: 186 NGQAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVL 245

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +L+  + + G L  A ++F+ M E+ V +W+ MI G++ +G  EKAL +F  M  +  
Sbjct: 246 GTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKT 305

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EA 349
             N  T  S LSAC+  G +E G ++   +   ++ +   I     +VD++ + G +  A
Sbjct: 306 IPNCVTFTSVLSACSHSGLVEKGHQIFETMW-TEYKITPQIKHYGCMVDLFCRAGMVGHA 364

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLA 402
              +     E +++ W  ++     HG  +      +K++    + P+  V ++
Sbjct: 365 HKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPENYVLVS 418



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/217 (23%), Positives = 96/217 (44%), Gaps = 9/217 (4%)

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK------GDLKKAGELFEQMPEK 259
           I  C+++G L KA++    M + N+     L    +        G +  A  +F      
Sbjct: 14  IKRCTRVGDL-KAIQ--AHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHP 70

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            +  W  +I G+S +     A+A++  M   G+  N +T    L AC K+  L  G  +H
Sbjct: 71  NLFMWNTIIRGYSISDSPITAIALYRDMFLCGISPNSYTFGFVLKACCKLLRLCEGQELH 130

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           + I       +  +   L+ +YA CG ++ A ++F E  E D  +W+ M+ G A +G+  
Sbjct: 131 SQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYAQNGQAV 190

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           +A++ F++M       D     +++  C   G + L 
Sbjct: 191 EALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLG 227


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 166/436 (38%), Positives = 262/436 (60%), Gaps = 34/436 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D +++ G +++A ++F  + +K +V+W+AM+ G++Q GE E A+ MF ++   G++ 
Sbjct: 37  ALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKP 96

Query: 295 NDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           N+FT  S L+ CA   A +  G + H +   +       + +AL+ MYAK GNIE+A  V
Sbjct: 97  NEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEV 156

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F   +EKDL++W +MI G A HG+  +A+  FK+M     + DG  F+ +  AC ++G V
Sbjct: 157 FKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLV 216

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------- 458
           +    +FD M  D  I P+ +H++ +V+L SR GQ  +  +  +N               
Sbjct: 217 EEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILA 276

Query: 459 -------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                        +  K++ +KP+  ++YVLLSN+YA  G W++ A+VR LM  R++KK+
Sbjct: 277 ACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKE 336

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-K 562
           PG+S+IEV    + F AG   H L  +I+ KLED+    ++ GY P T +VL +I +E K
Sbjct: 337 PGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHK 396

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           E  L  HSE+LA+AFGLI T  G+ + I+K L +CGDCH ++K  +KI +REIV+RD+ R
Sbjct: 397 EAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNR 456

Query: 622 FHYF-KDGTCSCRDYW 636
           FH+F  DG CSC D+W
Sbjct: 457 FHHFSSDGVCSCGDFW 472



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 121/250 (48%), Gaps = 16/250 (6%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++HAQ++  N   SS + T L+ +      ++ A  +F     K++  ++ ++ G A+  
Sbjct: 18  EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 77

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG--LHCLIVKSGVEYDAFV 166
             ++ I  F  + +  ++PN  T+  +  +V + +  S+G+G   H   +KS ++    V
Sbjct: 78  ETEAAIKMFGELTKGGIKPNEFTFSSIL-NVCAATNASMGQGKQFHGFAIKSRLDSSLCV 136

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L  MY + G    A +VF    EK+    ++ WN +I+G ++ G   KA+++F  M 
Sbjct: 137 SSALLTMYAKKGNIESAEEVFKRQREKD----LVSWNSMISGYAQHGQAMKALDVFKEMK 192

Query: 227 KKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-----AMINGFSQNGEA 277
           K+ V     +++ +       G +++  + F+ M     ++ T      M++ +S+ G+ 
Sbjct: 193 KRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQL 252

Query: 278 EKALAMFFQM 287
           EKA+ +   M
Sbjct: 253 EKAMKVIENM 262


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 207/629 (32%), Positives = 325/629 (51%), Gaps = 80/629 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A S+FD    +++  +N +I GL +N +    +     M    ++ N +T   +      
Sbjct: 269 ARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQ 328

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  +S    +H  ++K G+E+D FV   L +MY + G    A K F +    +    V+ 
Sbjct: 329 LGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITD----VVS 384

Query: 202 WNVLI-------NGCSKIGYLRKAVELFGMMPK-----------------KNVAS----- 232
           WN +I       +  +  G+  K ++L G  P                  KN  S     
Sbjct: 385 WNSIIAAYEQNDDPVTAHGFFVK-MQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFI 443

Query: 233 ----WV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
               W+        +++D + + G L  A ++FE +  K V+SW  +I G++QNG A +A
Sbjct: 444 MRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEA 503

Query: 281 LAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           + ++  M +   +  N  T VS L A A VGAL+ G+R+H  +   +  L   + T L+D
Sbjct: 504 IEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLID 563

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           +Y KCG +  A  +F +  ++  +TW A+I    IHG  E+ ++ F +M+  G +PD   
Sbjct: 564 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 623

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------ 453
           F+++L+AC +SG V+     F  M+ +Y I+PS+KH+  +V+LL R G     Y      
Sbjct: 624 FVSLLSACSHSGFVEEGKWCFRLMQ-EYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDM 682

Query: 454 ----------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                                 +  + +  +L ++  K+   YVLLSNIYA  G+W+ V 
Sbjct: 683 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 742

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR+L + R +KK PGWS IEVN  V  F  G   H   KEI+ +L  + A  +  GY+P
Sbjct: 743 KVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIP 802

Query: 550 GTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
              +VL +++E EKE  L  HSE+LA+AFG+I T P + I+I K L +CGDCH+  K+ S
Sbjct: 803 DYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFIS 862

Query: 609 KISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I+QREIV+RD+ RFH+FKDG CSC DYW
Sbjct: 863 RITQREIVVRDSNRFHHFKDGICSCGDYW 891



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 119/440 (27%), Positives = 202/440 (45%), Gaps = 51/440 (11%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           SS+   N   E     L  SS  T   + +HA +++     S  I+T+L++  +    + 
Sbjct: 109 SSYGLGNQNEEIDFNFLFDSSTKTPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVS 168

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSV 139
            +   FD    K+++ +N +I     N HF   I  F  +L +S +RP+  T+P V K+ 
Sbjct: 169 LSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC 228

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
            +   L  GR +HC   K G +++ FV   L  MY + G T  A  +FD+ P ++     
Sbjct: 229 GT---LVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGS-- 283

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVS-------------------- 235
             WN +I+G  + G   +A+++   M     K N  + VS                    
Sbjct: 284 --WNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 236 ---------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                          LI+ + + G+L+ A + F+QM    VVSW ++I  + QN +   A
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVD 339
              F +M   G + +  T+VS  S  A+    +    VH +I    + ++   IG A+VD
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDG 397
           MYAK G +++A  VF     KD+++W  +I G A +G   +AI+ + KMM    E  P+ 
Sbjct: 462 MYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVY-KMMEECKEIIPNQ 520

Query: 398 TVFLAILTACWYSGQVKLAL 417
             +++IL A  + G ++  +
Sbjct: 521 GTWVSILPAYAHVGALQQGM 540



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 106/231 (45%), Gaps = 15/231 (6%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRA 294
           L++ +   GD+  +   F+Q+P+K V +W +MI+ +  NG   +A+  F+Q+L    +R 
Sbjct: 157 LVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRP 216

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + +T    L AC   G L  G R+H +     F     +  +L+ MY++ G    A  +F
Sbjct: 217 DFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLF 273

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            +   +D+ +W AMI GL  +G   QA+    +M   G + +    ++IL  C   G + 
Sbjct: 274 DDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDIS 333

Query: 415 LALNFF-----DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460
            A+          + FD F+         ++N+ ++ G      +  Q  F
Sbjct: 334 TAMLIHLYVIKHGLEFDLFVS------NALINMYAKFGNLEDARKAFQQMF 378


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 343/673 (50%), Gaps = 88/673 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IH   I   L A   ++T L+        +  A  IF     ++L  +N ++ G A +
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 108 SHFQSCISHFVFM-LRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV--------- 156
             +   ++H + M +++  +RPN  T   +   +A    L+ G  +H   +         
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149

Query: 157 -KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------- 208
            KS +     +   L DMY + G    A +VFD  P +N+    + W+ LI G       
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE----VTWSALIGGFVLCSRM 205

Query: 209 -----------------------------CSKIGYLRKAVELFGMMPKKNVASWV----S 235
                                        C+ + +LR   +L  ++ K  V + +    S
Sbjct: 206 TQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS 265

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G + +A  LF++M  K  VS++A+++G+ QNG AE+A  +F +M    V  +
Sbjct: 266 LLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 325

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+VS + AC+ + AL+ G   H  +       + +I  AL+DMYAKCG I+ +  VF 
Sbjct: 326 AATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 385

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               +D+++W  MI G  IHG  ++A   F +M   G  PDG  F+ +L+AC +SG V  
Sbjct: 386 MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 445

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------- 458
             ++F  M   Y + P ++H+  +V+LLSR G   + Y+  Q+                 
Sbjct: 446 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGAC 505

Query: 459 ----------SFTKLLQ-LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                       ++++Q L P+   ++VLLSNIY+A GR+ + A VR + + +  KK PG
Sbjct: 506 RVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPG 565

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE- 564
            S+IE+NG +H F  G   H  + EI+ +L++I+ G ++ GY P T +VL +++EE++E 
Sbjct: 566 CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEK 625

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
           AL CHSEKLA+A+G++  +   TI + K L +CGDCH+++K+ S + +R I++RD  RFH
Sbjct: 626 ALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFH 685

Query: 624 YFKDGTCSCRDYW 636
           +FK+G CSC D+W
Sbjct: 686 HFKNGQCSCGDFW 698



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 152/340 (44%), Gaps = 56/340 (16%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           MLR  V PN  T+PF  K+ ++L+    GR +H   + +G++ D FV   L DMYV+   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV-ELFGMM------------- 225
              A  +F   P ++    ++ WN ++ G +  G    AV  L  M              
Sbjct: 61  LPDAAHIFATMPARD----LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTL 116

Query: 226 -----------------------------PKKNVASWVS--------LIDGFMRKGDLKK 248
                                        P +N  S ++        L+D + + G L  
Sbjct: 117 VALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLY 176

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACA 307
           A  +F+ MP +  V+W+A+I GF       +A  +F  ML  G+   +  ++ SAL ACA
Sbjct: 177 ARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 236

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            +  L  G ++H  ++ +        G +L+ MYAK G I+ A  +F E   KD ++++A
Sbjct: 237 SLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSA 296

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++ G   +GR E+A   FKKM     EPD    ++++ AC
Sbjct: 297 LVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPAC 336



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 147/339 (43%), Gaps = 24/339 (7%)

Query: 29  ITETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           ++ T I S + +  S   LR   Q+HA +    + A       L+S  +    ID A+++
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    K+   ++ L+ G  +N   +     F  M   +V P+  T   +  + + L+ L
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             GR  H  ++  G+  +  +   L DMY + G+   + +VF+  P ++    ++ WN +
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD----IVSWNTM 398

Query: 206 INGCSKIGYLRKAVELFGMM-----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           I G    G  ++A  LF  M     P   V +++ L+      G + +    F  M    
Sbjct: 399 IAGYGIHGLGKEATALFLEMNNLGFPPDGV-TFICLLSACSHSGLVIEGKHWFHVMGHGY 457

Query: 261 VVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
            ++     +  M++  S+ G  ++A   F Q +   +RA+    V+ L AC     ++ G
Sbjct: 458 GLTPRMEHYICMVDLLSRGGFLDEAYE-FIQSMP--LRADVRVWVALLGACRVYKNIDLG 514

Query: 316 VRVHNYISCNDFGLKGAIGTALV-DMYAKCGNIEAASLV 353
            +V   I   + G +G     L+ ++Y+  G  + A+ V
Sbjct: 515 KKVSRMI--QELGPEGTGNFVLLSNIYSAAGRFDEAAEV 551


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 186/603 (30%), Positives = 316/603 (52%), Gaps = 72/603 (11%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +++  +  K ++ A   FD    +++  +N ++ G A+N   +  +  F  M+   + 
Sbjct: 198 TAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIE 257

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+  T+  V  + +S     L   L   + +  ++ + FVR  L DMY + G    A ++
Sbjct: 258 PDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRI 317

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           FDE                      +G  R +V            +W ++I  + R G+L
Sbjct: 318 FDE----------------------LGAYRNSV------------TWNAMISAYTRVGNL 343

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSA 305
             A ELF  MP + VV+W +MI G++QNG++  A+ +F +M+ A  +  ++ T+VS +SA
Sbjct: 344 DSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 403

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C  +GALE G  V  +++ N   L  +   A++ MY++CG++E A  VF E   +D++++
Sbjct: 404 CGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSY 463

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +I G A HG   +AI     M   G EPD   F+ +LTAC ++G ++     F+S++ 
Sbjct: 464 NTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK- 522

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------------------- 458
               +P++ H+  +V+LL RVG+     +  +                            
Sbjct: 523 ----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGE 578

Query: 459 -SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  KL +L+P +  +++LLSNIYA+ GRWKDV R+R  M++  +KK  GWS++E  G +
Sbjct: 579 LAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGKL 638

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLA 574
           H+F      H+ + +I+  L ++    RE GY+     VL +++EE++E + G HSEKLA
Sbjct: 639 HKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKLA 698

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           + + L+ +  G  I++VK L +C DCH+ +K  SK+  R I++RD  RFH F DG CSC+
Sbjct: 699 ICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCK 758

Query: 634 DYW 636
           DYW
Sbjct: 759 DYW 761



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 144/494 (29%), Positives = 245/494 (49%), Gaps = 49/494 (9%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSAS-LHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
            LRQ+HAQII ++L   +     LI+  + L     Y   +F+     N+ +F  ++R  
Sbjct: 16  HLRQLHAQIIHNSLHHHNYWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           +        +  F  M    VRP+   YP + KS  +      G G H  ++K G   DA
Sbjct: 76  SHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNG-----GIGFHAHVLKLGHGSDA 130

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FVR  + DMY +LG    A KVFDE P+  +   V  WN +++G  K     +A  LF +
Sbjct: 131 FVRNAVIDMYARLGPIGHARKVFDEIPDYERK--VADWNAMVSGYWKWESEGQAQWLFDV 188

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           MP++NV +W +++ G+ +  DL+ A   F+ MPE+ VVSW AM++G++QNG AE+ L +F
Sbjct: 189 MPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLF 248

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M++AG+  ++ T V+ +SAC+  G       +   +      L   + TAL+DMYAKC
Sbjct: 249 DEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKC 308

Query: 345 GNIEAASLVFGE-------------------------TKE-------KDLLTWTAMIWGL 372
           G+I AA  +F E                          +E       ++++TW +MI G 
Sbjct: 309 GSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGY 368

Query: 373 AIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           A +G+   AI+ FK+M+ +    PD    +++++AC + G ++L  N+      +  I+ 
Sbjct: 369 AQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELG-NWVVRFLTENQIKL 427

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
           S+  H  ++ + SR G      ++++  F    ++  +   SY  L + +AA G   +  
Sbjct: 428 SISGHNAMIFMYSRCGS----MEDAKRVFQ---EMATRDVVSYNTLISGFAAHGHGVEAI 480

Query: 492 RVRTLMQRRSIKKD 505
            + + M+   I+ D
Sbjct: 481 NLMSTMKEGGIEPD 494


>gi|356522522|ref|XP_003529895.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 214/685 (31%), Positives = 327/685 (47%), Gaps = 82/685 (11%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           T+  I+ L+ +    + L   +QIH  +I     +++ I   ++S  S +  ++ A ++F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARAVF 290

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS---------- 136
           D     NL  +N +I   A N         F  M   S++P+ +T+  +           
Sbjct: 291 DSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYE 350

Query: 137 -------------------------KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
                                    ++V  L   +LG+ +H  I++S +EYD +V   L 
Sbjct: 351 NVLTNIRSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLV 410

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----K 227
           DMY++      A  VF  T  KN    +  WN LI+G +  G    A +L   M     K
Sbjct: 411 DMYIKNDCLEKAEVVFHHTKNKN----ICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIK 466

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAM 283
            ++ +W SL+ G+   G  ++A  +  ++   G    VVSWTAMI+G  QN     AL  
Sbjct: 467 ADLVTWNSLVSGYSMSGCSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYTDALQF 526

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F QM +  V+ N  T+ + L ACA    L+ G  +H +   + F     I TAL+DMY+K
Sbjct: 527 FSQMQEENVKPNSTTISTLLRACAGPSLLKKGEEIHCFSMKHGFVDDIYIATALIDMYSK 586

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G ++ A  VF   KEK L  W  M+ G AI+G  E+    F  M  +G  PD   F A+
Sbjct: 587 GGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDNMCKTGIRPDAITFTAL 646

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------QNS 456
           L+ C  SG V     +FDSM+ DY I P+++H++ +V+LL + G   +         Q +
Sbjct: 647 LSGCKNSGLVMDGWKYFDSMKTDYSINPTIEHYSCMVDLLGKAGFLDEALDFIHAMPQKA 706

Query: 457 QNSF---------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
             S                        L +L+P + ++YVL+ NIY+   RW DV R++ 
Sbjct: 707 DASIWGAVLAACRLHKDIKIAEIAARNLFRLEPYNSANYVLMMNIYSTFERWGDVERLKE 766

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
            M    +K    WS+I+V   +H F   G  H    EI+  L  +++  ++ GY+P T  
Sbjct: 767 SMTAMGVKIPNVWSWIQVRQTIHVFSTEGKSHPEEGEIYFDLYQLISEIKKLGYVPDTNC 826

Query: 554 VLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           V  NI + EKE+ L  H+EKLA+ +GL++   GT I++VK   IC DCH+  KY S    
Sbjct: 827 VHQNIDDSEKEKVLLSHTEKLAMTYGLMKIKGGTPIRVVKNTRICQDCHTAAKYISLARN 886

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
           REI LRD  RFH+F +G CSC D W
Sbjct: 887 REIFLRDGGRFHHFMNGECSCNDRW 911



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 184/441 (41%), Gaps = 45/441 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++HA ++         ++  LI+       ID A  +FD    +   ++N ++     + 
Sbjct: 152 EVHACLLKRGFQVDVHLSCALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSE 211

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            ++  +     M   S +    T   + ++   L  L+ G+ +H  +++ G   +  +  
Sbjct: 212 RWEDALELSRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            +  MY +  +   A  VFD T + N                                  
Sbjct: 272 SIVSMYSRNNRLELARAVFDSTEDHN---------------------------------- 297

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMF 284
            +ASW S+I  +   G L  A +LF +M     +  +++W ++++G    G  E  L   
Sbjct: 298 -LASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQGSYENVLTNI 356

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
             +  AG + +  ++ SAL A  ++G    G  +H YI  +       + T+LVDMY K 
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIELGYFNLGKEIHGYIMRSKLEYDVYVCTSLVDMYIKN 416

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
             +E A +VF  TK K++  W ++I G    G ++ A +   +M   G + D   + +++
Sbjct: 417 DCLEKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLIQMKEEGIKADLVTWNSLV 476

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464
           +    SG  + AL   + ++    + P+V   T +++   +    ++ Y ++   F+++ 
Sbjct: 477 SGYSMSGCSEEALAVINRIK-SLGLTPNVVSWTAMISGCCQ----NENYTDALQFFSQMQ 531

Query: 465 QLKPKHPSSYVLLSNIYAAEG 485
           +   K P+S  + + + A  G
Sbjct: 532 EENVK-PNSTTISTLLRACAG 551



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 119/253 (47%), Gaps = 8/253 (3%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASW 233
           G +    +VF E  +K          V++  C  +  L   +E+   + K+    +V   
Sbjct: 110 GDSHEILEVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLS 169

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +LI+ + +   + +A ++F++ P +    W  ++    ++   E AL +  +M  A  +
Sbjct: 170 CALINLYEKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAK 229

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAAS 351
           A D T+V  L AC K+ AL  G ++H Y+    FG     +I  ++V MY++   +E A 
Sbjct: 230 ATDGTIVKLLQACGKLRALNEGKQIHGYVI--RFGRVSNTSICNSIVSMYSRNNRLELAR 287

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF  T++ +L +W ++I   A++G    A   F++M  S  +PD   + ++L+     G
Sbjct: 288 AVFDSTEDHNLASWNSIISSYAVNGCLNGAWDLFREMESSSIKPDIITWNSLLSGHLLQG 347

Query: 412 QVKLALNFFDSMR 424
             +  L    S++
Sbjct: 348 SYENVLTNIRSLQ 360



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 91/187 (48%), Gaps = 5/187 (2%)

Query: 225 MPKKN--VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ-NGEAEKAL 281
           MPKK   V    S++  ++  GD + A ++F     +  + W + +  F+   G++ + L
Sbjct: 57  MPKKGNLVTMDGSMMRNYLEFGDFESATKVFFVGFARNYLLWNSFLEEFASFGGDSHEIL 116

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
            +F ++ D GV+ +   +   L  C  +  L  G+ VH  +    F +   +  AL+++Y
Sbjct: 117 EVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLLKRGFQVDVHLSCALINLY 176

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVF 400
            KC  I+ A+ VF ET  ++   W  ++       R+E A++  ++M   S    DGT+ 
Sbjct: 177 EKCLGIDRANQVFDETPLQEDFLWNTIVMANLRSERWEDALELSRRMQSASAKATDGTI- 235

Query: 401 LAILTAC 407
           + +L AC
Sbjct: 236 VKLLQAC 242


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  322 bits (825), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 205/647 (31%), Positives = 315/647 (48%), Gaps = 95/647 (14%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSH-------------FQSCISHFVFMLRLSVR 126
           D AL +F     ++L  +N LI GL+   H                 +  F  +LR  VR
Sbjct: 65  DAALGLFHRMPSRDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVR 124

Query: 127 PN------RLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-------VEYDAFVRVHLADM 173
                   RL +    ++  + ++L LG  L    V           + D   R  +   
Sbjct: 125 HGLLADAIRLFHQMPERNHVTYTVL-LGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSG 183

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y Q G+   A  +FDE P++N    V+ W  +I+G ++ G +  A +LF +MP +N  SW
Sbjct: 184 YCQAGRITEARALFDEMPKRN----VVSWTAMISGYAQNGKVILARKLFEVMPDRNEVSW 239

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF--------- 284
            +++ G+++ G ++ A +LF  MP+  V +  AM+ GF Q+G  + A AMF         
Sbjct: 240 TAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQHGMVDAAKAMFERMCARDDG 299

Query: 285 ----------------------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
                                  +ML  G+R N  + +S L+ CA +   + G  +H  +
Sbjct: 300 TWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAM 359

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
               F       +AL+ MY KCGN++ A  VF   + KD++ W +MI G A HG  E+A+
Sbjct: 360 LRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEAL 419

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F  +  +   PDG  ++ +LTAC Y+G+VK     F+SM  +  I     H++ +V+L
Sbjct: 420 GIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDL 479

Query: 443 LSRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSY 474
           L R G   +      N                            +  KLL+L+P     Y
Sbjct: 480 LGRAGLVDEALDLINNMPVEPDAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPY 539

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG---GHKLAKEI 531
           VLLS+IY + GRW+D + +R  +  R++ K PG S+IE N  VH F +G    H     I
Sbjct: 540 VLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAII 599

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKI 590
            + LE++     E GY     +VLH++ EE K ++L  HSE+ A+A+GL++   G  I++
Sbjct: 600 LNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRV 659

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K L +CGDCHS +K  +KI+ REI+LRD  RFH+FKDG CSCRDYW
Sbjct: 660 MKNLRVCGDCHSAIKLITKITSREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 18/251 (7%)

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
           V+ G   GA   FD  P +  +     +N LI G  +      A+ LF  MP +++ S+ 
Sbjct: 28  VRAGNIEGARAAFDAMPLRTTAS----YNALIAGYFRNHLPDAALGLFHRMPSRDLGSYN 83

Query: 235 SLIDGF-MRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           +LI G  +R+  L  A      +P    VVS+T+++ G+ ++G    A+ +F QM +   
Sbjct: 84  ALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPER-- 141

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             N  T    L      G +    ++ + +   D   +    TA++  Y + G I  A  
Sbjct: 142 --NHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVAR----TAMLSGYCQAGRITEARA 195

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +F E  ++++++WTAMI G A +G+   A + F+ M     + +   + A+L     +G 
Sbjct: 196 LFDEMPKRNVVSWTAMISGYAQNGKVILARKLFEVM----PDRNEVSWTAMLVGYIQAGH 251

Query: 413 VKLALNFFDSM 423
           V+ A + F++M
Sbjct: 252 VEDAEDLFNAM 262



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/221 (22%), Positives = 102/221 (46%), Gaps = 13/221 (5%)

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
           H  +D A ++F+    ++   ++ +I+   +N      +S F  ML   +RPN  ++  +
Sbjct: 280 HGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIRPNYTSFISI 339

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
               A+L+    GR LH  +++   + D F    L  MY++ G    A +VF+    K+ 
Sbjct: 340 LTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNMFEPKD- 398

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
              V++WN +I G ++ G   +A+ +F  +    +A    +++ ++      G +K+  E
Sbjct: 399 ---VVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEGRE 455

Query: 252 LFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
           +F  M        G   ++ M++   + G  ++AL +   M
Sbjct: 456 IFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNM 496


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 343/673 (50%), Gaps = 88/673 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IH   I   L A   ++T L+        +  A  IF     ++L  +N ++ G A +
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 108 SHFQSCISHFVFM-LRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV--------- 156
             +   ++H + M +++  +RPN  T   +   +A    L+ G  +H   +         
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 264

Query: 157 -KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------- 208
            KS +     +   L DMY + G    A +VFD  P +N+    + W+ LI G       
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNE----VTWSALIGGFVLCSRM 320

Query: 209 -----------------------------CSKIGYLRKAVELFGMMPKKNVASWV----S 235
                                        C+ + +LR   +L  ++ K  V + +    S
Sbjct: 321 TQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNS 380

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G + +A  LF++M  K  VS++A+++G+ QNG AE+A  +F +M    V  +
Sbjct: 381 LLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPD 440

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+VS + AC+ + AL+ G   H  +       + +I  AL+DMYAKCG I+ +  VF 
Sbjct: 441 AATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFN 500

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               +D+++W  MI G  IHG  ++A   F +M   G  PDG  F+ +L+AC +SG V  
Sbjct: 501 MMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIE 560

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------- 458
             ++F  M   Y + P ++H+  +V+LLSR G   + Y+  Q+                 
Sbjct: 561 GKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGAC 620

Query: 459 ----------SFTKLLQ-LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                       ++++Q L P+   ++VLLSNIY+A GR+ + A VR + + +  KK PG
Sbjct: 621 RVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPG 680

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE- 564
            S+IE+NG +H F  G   H  + EI+ +L++I+ G ++ GY P T +VL +++EE++E 
Sbjct: 681 CSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEK 740

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
           AL CHSEKLA+A+G++  +   TI + K L +CGDCH+++K+ S + +R I++RD  RFH
Sbjct: 741 ALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFH 800

Query: 624 YFKDGTCSCRDYW 636
           +FK+G CSC D+W
Sbjct: 801 HFKNGQCSCGDFW 813



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 168/377 (44%), Gaps = 58/377 (15%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASL 142
           +FD     ++  +N LIR  + +S   +     ++  MLR  V PN  T+PF  K+ ++L
Sbjct: 79  LFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPFALKACSAL 138

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           +    GR +H   + +G++ D FV   L DMYV+      A  +F   P ++    ++ W
Sbjct: 139 ADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD----LVAW 194

Query: 203 NVLINGCSKIGYLRKAV-ELFGMM------------------------------------ 225
           N ++ G +  G    AV  L  M                                     
Sbjct: 195 NAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYC 254

Query: 226 ------PKKNVASWVS--------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                 P +N  S ++        L+D + + G L  A  +F+ MP +  V+W+A+I GF
Sbjct: 255 IRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGF 314

Query: 272 SQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
                  +A  +F  ML  G+   +  ++ SAL ACA +  L  G ++H  ++ +     
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHAD 374

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              G +L+ MYAK G I+ A  +F E   KD ++++A++ G   +GR E+A   FKKM  
Sbjct: 375 LTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQA 434

Query: 391 SGTEPDGTVFLAILTAC 407
              EPD    ++++ AC
Sbjct: 435 CNVEPDAATMVSLIPAC 451



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 80/165 (48%), Gaps = 4/165 (2%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRANDFTVVS 301
           G L +A  LF+Q+P   V ++  +I  +S +    A   L ++ +ML   V  N++T   
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
           AL AC+ +     G  +H +           + TAL+DMY KC  +  A+ +F     +D
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYF--KKMMYSGTEPDGTVFLAIL 404
           L+ W AM+ G A HG Y  A+ +    +M      P+ +  +A+L
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 235



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 77/339 (22%), Positives = 147/339 (43%), Gaps = 24/339 (7%)

Query: 29  ITETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           ++ T I S + +  S   LR   Q+HA +    + A       L+S  +    ID A+++
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    K+   ++ L+ G  +N   +     F  M   +V P+  T   +  + + L+ L
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             GR  H  ++  G+  +  +   L DMY + G+   + +VF+  P ++    ++ WN +
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRD----IVSWNTM 513

Query: 206 INGCSKIGYLRKAVELFGMM-----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           I G    G  ++A  LF  M     P   V +++ L+      G + +    F  M    
Sbjct: 514 IAGYGIHGLGKEATALFLEMNNLGFPPDGV-TFICLLSACSHSGLVIEGKHWFHVMGHGY 572

Query: 261 VVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
            ++     +  M++  S+ G  ++A   F Q +   +RA+    V+ L AC     ++ G
Sbjct: 573 GLTPRMEHYICMVDLLSRGGFLDEAYE-FIQSMP--LRADVRVWVALLGACRVYKNIDLG 629

Query: 316 VRVHNYISCNDFGLKGAIGTALV-DMYAKCGNIEAASLV 353
            +V   I   + G +G     L+ ++Y+  G  + A+ V
Sbjct: 630 KKVSRMI--QELGPEGTGNFVLLSNIYSAAGRFDEAAEV 666


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 254/440 (57%), Gaps = 32/440 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V    +++      G+   A ELF+ MP++  V+W AMI G+   G + +AL +F +M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            AG    + T+VSAL+ACA++GALE G  VH+        L   +GTAL+DMY+KCG + 
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
           AA  VF    E+++ TWT+ + GLA++G     +  FK+M  +G EP+G  F+ +L  C 
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS---------- 456
            +G V      FDSM+ ++ I+P ++H+  +V+L  R G+  D+  + N           
Sbjct: 447 MAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVW 506

Query: 457 ----------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                           + +  KL+ ++ K+ +++VLLSNIYA    WK V+ VR +M+ +
Sbjct: 507 GALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAK 566

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +KK PG S IEV G VH F  GG  H   KEI   L ++    R QGY+  T+ VL +I
Sbjct: 567 GVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDI 626

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +EE KE+A+  HSEKLA+AFGL+       I+IVK L +C DCH   K  SK+  REIV+
Sbjct: 627 EEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVM 686

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH+FKDG CSC+DYW
Sbjct: 687 RDRNRFHHFKDGACSCKDYW 706


>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Vitis vinifera]
          Length = 573

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/435 (40%), Positives = 259/435 (59%), Gaps = 34/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LID + + GDL  A  +F+++P + V +W A+I G +Q  ++ +ALA+F +M   G + 
Sbjct: 140 TLIDAYAKCGDLDSAQRVFDEIPLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKI 199

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N+ +V+ AL+AC+++GAL AG  VH  +   D  +   +  A++DMYAKCG  +    VF
Sbjct: 200 NEISVLGALAACSQLGALRAGEGVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVF 259

Query: 355 GE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
              T  K ++TW  MI   A+HG   +A++ F++M  +  E D   +LA+L AC ++G V
Sbjct: 260 STMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLV 319

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------------------- 453
           +  +  FD M     +  +VKH+  VV+LL R G+  + Y                    
Sbjct: 320 EEGVRLFDEM-VGRGVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPIVPDVVLWQSLLG 378

Query: 454 --------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                   + ++ +  KL+++       +VLLSN+YAA  RW+DV RVR  M+ R ++K 
Sbjct: 379 ACKTYGNVEMAEMASRKLVEMGSNSCGDFVLLSNVYAARERWEDVGRVREAMKSRDVRKV 438

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-K 562
           PG+SYIEV G +H+F  G   H   +EI++KL++I    +  GY+  T  VLH+I EE K
Sbjct: 439 PGFSYIEVEGVIHKFVNGDQSHPDWREIYAKLDEIRFRIKAFGYVAETSLVLHDIGEEDK 498

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TR 621
           E AL  HSEKLA+AFGLI T+ GT I++ K L ICGDCH ++K  SKI  +EI++RD  R
Sbjct: 499 ENALCHHSEKLAVAFGLISTSEGTPIRVNKNLRICGDCHVVIKLISKIYDQEIIVRDRAR 558

Query: 622 FHYFKDGTCSCRDYW 636
           FH FKDG+CSCRDYW
Sbjct: 559 FHRFKDGSCSCRDYW 573



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 172/413 (41%), Gaps = 56/413 (13%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRIT---TQLISSASLHKS---IDYALSIFDHF 89
           S+I    +   ++Q+ A ++    F + RI+   T+L+   +L  S   + YA  I  H 
Sbjct: 6   SIIQKCTTLSHIKQVQAHLLTTGQF-NLRISPSRTRLLEHCALSPSPAYLPYAAHIHRHI 64

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
              + + FN L+RGLA   H     +H +  L   + P+ LT+ F   + A    LS   
Sbjct: 65  PHPSTNDFNALLRGLARGPH----PTHALTFLSTILHPDALTFSFSLIASARALALSETS 120

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING- 208
            +H  +++ G   D  +   L D Y + G    A +VFDE P ++    V  WN LI G 
Sbjct: 121 QIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRD----VAAWNALIAGL 176

Query: 209 ----------------------------------CSKIGYLRKAVELFGMMPKK----NV 230
                                             CS++G LR    +   + K     NV
Sbjct: 177 AQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVRKMDLDINV 236

Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
               ++ID + + G   K   +F  M   K VV+W  MI  F+ +G+  +AL +F +M  
Sbjct: 237 QVCNAVIDMYAKCGFADKGFRVFSTMTCGKSVVTWNTMIMAFAMHGDGCRALELFEEMGK 296

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-E 348
             V  +  T ++ L AC   G +E GVR+ + +             ++VD+  + G + E
Sbjct: 297 TQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGVNRNVKHYGSVVDLLGRAGRLGE 356

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           A  ++       D++ W +++     +G  E A    +K++  G+   G   L
Sbjct: 357 AYRIINSMPIVPDVVLWQSLLGACKTYGNVEMAEMASRKLVEMGSNSCGDFVL 409



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/209 (22%), Positives = 95/209 (45%), Gaps = 5/209 (2%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           L  A  +   +P      + A++ G ++      AL     +L        F+++    A
Sbjct: 54  LPYAAHIHRHIPHPSTNDFNALLRGLARGPHPTHALTFLSTILHPDALTFSFSLI----A 109

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            A+  AL    ++H+++          +GT L+D YAKCG++++A  VF E   +D+  W
Sbjct: 110 SARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEIPLRDVAAW 169

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            A+I GLA   +  +A+  F +M   G + +    L  L AC   G ++        +R 
Sbjct: 170 NALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGEGVHACVR- 228

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
              ++ +V+    V+++ ++ G   +G++
Sbjct: 229 KMDLDINVQVCNAVIDMYAKCGFADKGFR 257



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 108/236 (45%), Gaps = 9/236 (3%)

Query: 32  THIISLIHSSNST--KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T   SLI S+ +    +  QIH+ ++     A   + T LI + +    +D A  +FD  
Sbjct: 102 TFSFSLIASARALALSETSQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRVFDEI 161

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             +++  +N LI GLA+ S     ++ F  M     + N ++      + + L  L  G 
Sbjct: 162 PLRDVAAWNALIAGLAQGSKSSEALALFNRMRAEGEKINEISVLGALAACSQLGALRAGE 221

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
           G+H  + K  ++ +  V   + DMY + G     F+VF         +SV+ WN +I   
Sbjct: 222 GVHACVRKMDLDINVQVCNAVIDMYAKCGFADKGFRVFSTM---TCGKSVVTWNTMIMAF 278

Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +  G   +A+ELF  M K  V     ++++++      G +++   LF++M  +GV
Sbjct: 279 AMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVRLFDEMVGRGV 334


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 199/667 (29%), Positives = 337/667 (50%), Gaps = 76/667 (11%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
           +S  ++RQ+H+ +I     ++  ++  L+ S    +S+  A  +F+    ++   FN L+
Sbjct: 212 DSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPERDSVTFNALL 271

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
            G ++    +  I+ F  M  +  RP   T+  +  +   L  +  G+ +H  +VK    
Sbjct: 272 TGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFV 331

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
           ++ FV   L D Y +  +   A K+F E PE +     + +NVL+   +  G +++++EL
Sbjct: 332 WNVFVANALLDFYSKHDRVVEASKLFYEMPEVDG----ISYNVLVTCYAWNGRVKESLEL 387

Query: 222 FGMM----------PKKNVASWV-----------------------------SLIDGFMR 242
           F  +          P   + S                               SL+D + +
Sbjct: 388 FKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAK 447

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G+  +A  +F  +  +  V WTAMI+ + Q G  E  L +F +M  A + A+  T  S 
Sbjct: 448 CGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASI 507

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           + ACA + +L  G ++H++I  + +      G+ALVDMYAKCG+I+ A  +F E   ++ 
Sbjct: 508 VRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNS 567

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++W A+I   A +G  +  ++ F++M+ SG +PD    L+IL AC + G V+  L +FDS
Sbjct: 568 VSWNALISAYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDS 627

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQ------------------------DSQGYQNSQN 458
           M   Y + P  +H+   +++L R G+                        +S G   +Q 
Sbjct: 628 MTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQE 687

Query: 459 ----SFTKLLQLKP-KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
               +  +L  +K  +  + YV +SNIYAA G W +V +V+  M+ R +KK P +S++E+
Sbjct: 688 LAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEI 747

Query: 514 NGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHS 570
               H F A    H   +EI  KL+++     ++GY P +   LHN+ EE K E+L  HS
Sbjct: 748 KHKTHVFTANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHS 807

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGT 629
           E++A+AF LI T  G+ I ++K L  C DCH+ +K  SKI +REI +RD +RFH+F+DG 
Sbjct: 808 ERIAIAFALISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGF 867

Query: 630 CSCRDYW 636
           C+CRDYW
Sbjct: 868 CTCRDYW 874



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/545 (21%), Positives = 229/545 (42%), Gaps = 63/545 (11%)

Query: 7   NRLTTAIAPTTN-------IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           N +TT  AP  +       IK+   P N      ++            R++  ++   N+
Sbjct: 74  NLVTTLTAPKPHLHVDASIIKTGFNP-NTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNI 132

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
           F+++ +    I S +L +    A ++FD    +    + +LI G A+N+ F+     F+ 
Sbjct: 133 FSTNTMIMGYIKSGNLSE----ARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIE 188

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           M R  + P+ ++   +         ++  R +H  ++K G +    V   L D Y +   
Sbjct: 189 MGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRS 248

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----- 228
              AF++F++ PE++     + +N L+ G SK G+ R+A+ LF      G  P +     
Sbjct: 249 LGLAFQLFNDIPERDS----VTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAA 304

Query: 229 ----------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
                                       NV    +L+D + +   + +A +LF +MPE  
Sbjct: 305 ILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVD 364

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
            +S+  ++  ++ NG  +++L +F ++   G    +F   + LS  A    L+ G ++H+
Sbjct: 365 GISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHS 424

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
                D   +  +G +LVDMYAKCG    A+ +F +   +  + WTAMI      G +E 
Sbjct: 425 QTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHED 484

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
            ++ F +M  +    D   + +I+ AC     + L       +    +I  +V   + +V
Sbjct: 485 GLKLFVEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYIS-NVFSGSALV 543

Query: 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
           ++ ++ G      Q  Q       ++  ++  S+  L + YA  G      R+   M R 
Sbjct: 544 DMYAKCGSIKDALQMFQ-------EMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRS 596

Query: 501 SIKKD 505
            ++ D
Sbjct: 597 GLQPD 601



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 190/447 (42%), Gaps = 80/447 (17%)

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           N +  P     V +L+       +   I+K+G   + +    L   ++Q G   GA K+F
Sbjct: 65  NNIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLF 124

Query: 188 DETPEKN------------KS---------------ESVLLWNVLINGCSKIGYLRKAVE 220
           DE P KN            KS                + + W +LI G ++    R+A  
Sbjct: 125 DEMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFG 184

Query: 221 LF------GMMPK--------------------KNVASWV-------------SLIDGFM 241
           LF      G+ P                     + V S V             SL+D + 
Sbjct: 185 LFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYC 244

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           +   L  A +LF  +PE+  V++ A++ G+S+ G   +A+ +FF+M + G R  +FT  +
Sbjct: 245 KTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAA 304

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L+A  ++  +E G +VH ++   +F     +  AL+D Y+K   +  AS +F E  E D
Sbjct: 305 ILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVD 364

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
            +++  ++   A +GR +++++ FK++ ++G +     F  +L+       + L L+   
Sbjct: 365 GISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSI----AAISLNLDIGR 420

Query: 422 SMRFDYFIEPSVKHHTV---VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478
            +     +  ++    V   +V++ ++ G+  +      N     L ++   P + ++ S
Sbjct: 421 QIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEA-----NRIFSDLAIQSSVPWTAMISS 475

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKD 505
             Y  +G  +D  ++   MQR  I  D
Sbjct: 476 --YVQKGLHEDGLKLFVEMQRAKIGAD 500


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 220/718 (30%), Positives = 348/718 (48%), Gaps = 129/718 (17%)

Query: 43   STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
            ++  L Q+HA + +  L      +T+LI S +     + +  +FD F   +  ++ VLI+
Sbjct: 360  TSTTLTQLHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDTFPKPDSFMWGVLIK 419

Query: 103  GLAENSHF--------------QSCISHFVF----------------------------- 119
                   F              Q+ IS+FVF                             
Sbjct: 420  CYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKNGQASEGLDMF 479

Query: 120  --MLRLSVRPNRLTYPFVSKSVASLSLLSLGR--------GLHCLIVKSGVEYD-AFVRV 168
              M+  +V P+ +T   V+++ + L  L LGR         +H  +++  ++ +  F+  
Sbjct: 480  SQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELDFLGP 539

Query: 169  HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
             L ++Y   G  R   KVF+   EK    ++L WN LI+  ++ G   +A+ LF      
Sbjct: 540  ALMELYADTGNLRDCHKVFETIKEK----TILSWNTLISIFTRNGQPEEALLLFVQMQTQ 595

Query: 223  GMMPKK------------------------------NVASWV--SLIDGFMRKGDLKKAG 250
            G+MP                                N   +V  +LID + + G +  A 
Sbjct: 596  GLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFVHSAN 655

Query: 251  ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            ++FE++ EK +V+W +MI GFSQNG + +A+ +F QM    V+ +  T +S + AC+ +G
Sbjct: 656  KMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLG 715

Query: 311  ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
             LE G  VH+ +          + TAL DMY+KCG ++ A  VF    E+ +++W+ MI 
Sbjct: 716  YLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIA 775

Query: 371  GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
            G  +HG+    I  F +M+ SG +P+   F+ IL+AC ++G V+    +F+SM  ++ +E
Sbjct: 776  GYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMS-EFGVE 834

Query: 431  PSVKHHTVVVNLLSRVGQDSQGYQ---------NSQ------------------NSFTK- 462
            P   H   +V+LLSR G  +  YQ         NS                    S  K 
Sbjct: 835  PKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRIDIIKSIEKN 894

Query: 463  LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
            LL +       Y LLSNIYA EG W    +VR++M+ + ++K PG+S IE++  ++RF  
Sbjct: 895  LLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGP 954

Query: 523  G--GHKLAKEIHSKLEDIMAGAREQGYMPGTE-WVLHNIKEEKEEALGCHSEKLALAFGL 579
            G   H   K+I+  LE+  +    Q Y    +  ++   K  KE  +  HSEKLA+AFG+
Sbjct: 955  GDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGI 1014

Query: 580  IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            I T PGTT++I K L +C DCHS  K ASKI+ REI++RD  RFH F++G+CSC DYW
Sbjct: 1015 INTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSCSCNDYW 1072


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 192/573 (33%), Positives = 296/573 (51%), Gaps = 76/573 (13%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + ++ A+   +SLGR +H   VK+ V +       L DMY + G   GA  VFD    + 
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR- 62

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV-------------------- 234
              +V+ W  LI   ++ G   +A+ LF  M ++ V+  +                    
Sbjct: 63  ---TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGK 119

Query: 235 -------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                              +L+D + + G ++ A  +F +MP K ++SW  MI G+S+N 
Sbjct: 120 DVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNS 179

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
              +AL++F  M+   ++ +  T+   L ACA + +L+ G  VH +I  N F     +  
Sbjct: 180 LPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVAN 238

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           ALVDMY KCG    A L+F     KDL+TWT MI G  +HG    AI  F +M  +G EP
Sbjct: 239 ALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEP 298

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
           D   F++IL AC +SG +     FF+ M+ +  ++P ++H+  +V+LL+R G+ +  Y+ 
Sbjct: 299 DEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKF 358

Query: 456 ----------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                       ++     + +L+P++   YVLL+N YA   +W
Sbjct: 359 IKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKW 418

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ 545
           ++V ++R  + RR +KK+PG S+IEV   VH F AG   H  AK+I   L+ + +  +E+
Sbjct: 419 EEVKKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEE 478

Query: 546 GYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P T + L N    +KE AL  HSEKLA+AFG++   P  TI++ K L +CGDCH + 
Sbjct: 479 GYFPKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMA 538

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+ SK   REIVLRD+ RFH+FKDG C CR +W
Sbjct: 539 KFISKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 140/302 (46%), Gaps = 27/302 (8%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T T ++     + S +  + +H  I  +++ ++  +   L+   +   S++ A S+F   
Sbjct: 101 TITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEM 160

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             K++  +N +I G ++NS     +S F  M+ L ++P+  T   +  + ASL+ L  G+
Sbjct: 161 PVKDIISWNTMIGGYSKNSLPNEALSLFGDMV-LEMKPDGTTLACILPACASLASLDRGK 219

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  I+++G   D  V   L DMYV+ G    A  +FD  P K+    ++ W V+I G 
Sbjct: 220 EVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKD----LITWTVMIAGY 275

Query: 210 SKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-- 263
              G+   A+  F  M +  +     S++S++      G L +    F  M ++  V   
Sbjct: 276 GMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPK 335

Query: 264 ---WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
              +  +++  +++G+    LAM ++ + +     D T+          GAL +G R+H+
Sbjct: 336 LEHYACIVDLLARSGK----LAMAYKFIKSMPIEPDATI---------WGALLSGCRIHH 382

Query: 321 YI 322
            +
Sbjct: 383 DV 384



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 5/165 (3%)

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +VS L ACA  G +  G  VH          K      L+DMYAKCG ++ A LVF    
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            + ++TWT++I   A  G  ++AI+ F +M   G  PD      +L AC  +G ++   +
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
             + +R     E  ++ +  V N L  +       +++ + F ++
Sbjct: 121 VHNYIR-----ENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEM 160


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 204/665 (30%), Positives = 332/665 (49%), Gaps = 80/665 (12%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q+ Q+  QII     +   +   L+ S      +D A  +F      +   +N +I G +
Sbjct: 167 QITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYS 226

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           ++   +  ++ FV M    ++P   T+  V  +   L  + LG+ +H  ++K+   ++ F
Sbjct: 227 KDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVF 286

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L D Y +      A K+FDE PE++     + +NV+I+G +  G  + A +LF  +
Sbjct: 287 VSNALLDFYSKHDSVIDARKLFDEMPEQDG----VSYNVIISGYAWDGKHKYAFDLFREL 342

Query: 226 P-----------------KKNVASWV----------------------SLIDGFMRKGDL 246
                               N   W                       SL+D + + G  
Sbjct: 343 QFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKF 402

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           ++A  +F  +  +  V WTAMI+ + Q G  E+ L +F +M  A V A+  T  S L A 
Sbjct: 403 EEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRAS 462

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A + +L  G ++H++I  + F      G+AL+D+YAKCG+I+ A   F E  ++++++W 
Sbjct: 463 ASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWN 522

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI   A +G  E  ++ FK+M+ SG +PD   FL +L+AC +SG V+  L  F+SM   
Sbjct: 523 AMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQI 582

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQNSQ---- 457
           Y ++P  +H+  VV++L R G+ ++                          ++N +    
Sbjct: 583 YKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARR 642

Query: 458 --NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
             +    + +L+   P  YV +SNIYAA G+W++V++V   M+ R +KK P +S++E+  
Sbjct: 643 AADQLFNMEELRDAAP--YVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKH 700

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEK 572
             H F A    H   +EI  K++ +     E GY P T   LHN  E+ K E+L  HSE+
Sbjct: 701 ETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSER 760

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AF LI T  G+ I ++K L  C DCH+ +K  SKI  REI +RD TRFH+F+DG CS
Sbjct: 761 LAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCS 820

Query: 632 CRDYW 636
           C D+W
Sbjct: 821 CGDFW 825



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 170/400 (42%), Gaps = 47/400 (11%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q RQ+  ++   N  +++ + +  + S +L +    A  +FD    +    + +LI G +
Sbjct: 70  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGE----ARKLFDGMVERTAVTWTILIGGYS 125

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           + + F+     FV M R    P+ +T+  +        + +    +   I+K G +    
Sbjct: 126 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 185

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
           V   L D Y +  +   A ++F E PE +     + +N +I G SK G   KAV LF   
Sbjct: 186 VGNTLVDSYCKSNRLDLACQLFKEMPEIDS----VSYNAMITGYSKDGLDEKAVNLFVEM 241

Query: 223 ---GMMPKK---------------------------------NVASWVSLIDGFMRKGDL 246
              G+ P +                                 NV    +L+D + +   +
Sbjct: 242 QNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 301

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             A +LF++MPE+  VS+  +I+G++ +G+ + A  +F ++         F   + LS  
Sbjct: 302 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 361

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           +     E G ++H          +  +G +LVDMYAKCG  E A ++F     +  + WT
Sbjct: 362 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 421

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           AMI      G YE+ +Q F KM  +    D   F ++L A
Sbjct: 422 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRA 461



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/196 (33%), Positives = 102/196 (52%)

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           K G L +A +LF  MP KN  S   +I G+++ G+L +A +LF+ M E+  V+WT +I G
Sbjct: 64  KNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGG 123

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           +SQ  + ++A  +F QM   G   +  T V+ LS C          +V   I    +  +
Sbjct: 124 YSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSR 183

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +G  LVD Y K   ++ A  +F E  E D +++ AMI G +  G  E+A+  F +M  
Sbjct: 184 LIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN 243

Query: 391 SGTEPDGTVFLAILTA 406
           SG +P    F A+L A
Sbjct: 244 SGLKPTEFTFAAVLCA 259



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++  Y K GN+  A  +F    E+  +TWT +I G +   ++++A + F +M   GTEPD
Sbjct: 89  MISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPD 148

Query: 397 GTVFLAILTAC 407
              F+ +L+ C
Sbjct: 149 YVTFVTLLSGC 159


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 179/446 (40%), Positives = 258/446 (57%), Gaps = 32/446 (7%)

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           G +   N     +L++ ++R G L++A ++F+ M      SWT MI   ++N E  +AL 
Sbjct: 4   GELKSSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALE 63

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M   G+     T+ S L+ACA  GAL+ G ++H+ +  + F       TAL+DMYA
Sbjct: 64  LFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYA 123

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG++E +S VF   + ++ ++WTAMI  LA HG+ ++A++ FK+M   G   D T F+ 
Sbjct: 124 KCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFIC 183

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQ--- 457
           +L AC ++G +K +L FF SM  DY I P+  H+   ++ + R G  QD++   +S    
Sbjct: 184 VLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFH 243

Query: 458 -------------------NSFTK----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                 TK    L +L P+   +Y LL N+YAA  R+ D  RVR
Sbjct: 244 PETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVR 303

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             M  R +KK PG S+IEV   VH F AG   H    EI  +LE +    RE GY+P T+
Sbjct: 304 KSMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTK 363

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH + +EEKE+ +G HSEKLA+AFGLI T PGT + IVK L +C DCH+  K  +KI 
Sbjct: 364 DVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIM 423

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
           +R IV+RDT RFH+F+DG CSC+DYW
Sbjct: 424 RRRIVVRDTHRFHHFEDGQCSCKDYW 449



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 89/240 (37%), Gaps = 37/240 (15%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S++ A  +FD     +   +  +I    EN      +  F  M    + P  +T   V  
Sbjct: 26  SLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLN 85

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK-- 195
           + A    L +G+ +H  +  SG       +  L DMY + G    + KVF     +N   
Sbjct: 86  ACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVS 145

Query: 196 --------------SESVLLWN---------------VLINGCSKIGYLRKAVELFGMMP 226
                          E++ L+                 ++  CS  G +++++E F  M 
Sbjct: 146 WTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMV 205

Query: 227 KKNVAS-----WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKA 280
           +    +     +   +D   R G L+ A EL   MP     V+W  ++N    + +AE+A
Sbjct: 206 EDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQAERA 265


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 174/469 (37%), Positives = 261/469 (55%), Gaps = 37/469 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           L+  C+    L +  +L  +  K    +NV    +LI+ +    ++  A  +F+++ E  
Sbjct: 127 LLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPC 186

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VV++ AMI G+++     +AL++F ++    ++  D T++S LS+CA +GAL+ G  +H 
Sbjct: 187 VVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHE 246

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y+  N F     + TAL+DMYAKCG+++ A  VF     +D   W+AMI   AIHG   +
Sbjct: 247 YVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLK 306

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+  FK+M  +GTEPD   FL +L AC ++G V+    +F  MR  Y + P +KH+  +V
Sbjct: 307 AVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMV 366

Query: 441 NLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPS 472
           +LL R G+  + Y+                              +    ++ +L   H  
Sbjct: 367 DLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGG 426

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKE 530
            Y++LSN+ A  GRW+DV  VR LM  R + K PG S +EVN  VH F +G   H ++ +
Sbjct: 427 DYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTK 486

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           +H  L++++   +  GY+P T  V H     EEKE  L  HSEKLA+ FGL+ T PGTTI
Sbjct: 487 LHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTI 546

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           ++VK L +CGDCHS  K  S I  R+I+LRD  RFH+FKDG CSC DYW
Sbjct: 547 RVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 101/410 (24%), Positives = 180/410 (43%), Gaps = 50/410 (12%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS 74
           P   +     P++N   TH +SL+    S ++L+Q+ A  I  +L +   + T+ I+  S
Sbjct: 4   PAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCS 63

Query: 75  LHK---SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
           L+    S+ +A  +FD     ++ +FN + RG A         + F  +L   + P+  T
Sbjct: 64  LNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYT 123

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +P + K+ AS   L  GR LHCL +K G+  + +V   L +MY    +   A +VFD+  
Sbjct: 124 FPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIW 183

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN---------------------- 229
           E      V+ +N +I G ++     +A+ LF  +  +N                      
Sbjct: 184 EP----CVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALD 239

Query: 230 VASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           +  W+                 +LID + + G L  A  +FE M  +   +W+AMI  ++
Sbjct: 240 LGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYA 299

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
            +G   KA+++F +M  AG   ++ T +  L AC+  G +E G   + Y   + +G+   
Sbjct: 300 IHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFE-YFYGMRDKYGVIPG 358

Query: 333 IG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           I     +VD+  + G +E A   + G       + W  ++     HG  E
Sbjct: 359 IKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVE 408



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 129/277 (46%), Gaps = 18/277 (6%)

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
           R A  V    P  + S +    ++L     K   LR+  +L     K ++ S +S++  F
Sbjct: 3   RPAPPVTPMCPPNSNSNTTHPLSLL----PKCTSLRELKQLQAFAIKTHLHSDLSVLTKF 58

Query: 241 MR-------KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           +           ++ A  LF+Q+P+  +V +  M  G+++     +A  +F Q+L +G+ 
Sbjct: 59  INFCSLNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLF 118

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            +D+T  S L ACA   ALE G ++H             +   L++MY  C  ++ A  V
Sbjct: 119 PDDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRV 178

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F +  E  ++T+ AMI G A   R  +A+  F+++     +P     L++L++C   G +
Sbjct: 179 FDKIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGAL 238

Query: 414 KLALNFFDSMR---FDYFIEPSVKHHTVVVNLLSRVG 447
            L     + ++   F+ F    VK  T ++++ ++ G
Sbjct: 239 DLGKWMHEYVKKNGFNRF----VKVDTALIDMYAKCG 271


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 254/440 (57%), Gaps = 32/440 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V    +++      G+   A ELF+ MP++  V+W AMI G+   G + +AL +F +M 
Sbjct: 260 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 319

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            AG    + T+VSAL+ACA++GALE G  VH+        L   +GTAL+DMY+KCG + 
Sbjct: 320 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 379

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
           AA  VF    E+++ TWT+ + GLA++G     +  FK+M  +G EP+G  F+ +L  C 
Sbjct: 380 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 439

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS---------- 456
            +G V      FDSM+ ++ I+P ++H+  +V+L  R G+  D+  + N           
Sbjct: 440 MAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVW 499

Query: 457 ----------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                           + +  KL+ ++ K+ +++VLLSNIYA    WK V+ VR +M+ +
Sbjct: 500 GALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAK 559

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +KK PG S IEV G VH F  GG  H   KEI   L ++    R QGY+  T+ VL +I
Sbjct: 560 GVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDI 619

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +EE KE+A+  HSEKLA+AFGL+       I+IVK L +C DCH   K  SK+  REIV+
Sbjct: 620 EEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVM 679

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH+FKDG CSC+DYW
Sbjct: 680 RDRNRFHHFKDGACSCKDYW 699


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 174/440 (39%), Positives = 254/440 (57%), Gaps = 32/440 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V    +++      G+   A ELF+ MP++  V+W AMI G+   G + +AL +F +M 
Sbjct: 267 DVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDEMR 326

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            AG    + T+VSAL+ACA++GALE G  VH+        L   +GTAL+DMY+KCG + 
Sbjct: 327 HAGAAVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVA 386

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
           AA  VF    E+++ TWT+ + GLA++G     +  FK+M  +G EP+G  F+ +L  C 
Sbjct: 387 AAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLRGCS 446

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS---------- 456
            +G V      FDSM+ ++ I+P ++H+  +V+L  R G+  D+  + N           
Sbjct: 447 MAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHEGVW 506

Query: 457 ----------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                           + +  KL+ ++ K+ +++VLLSNIYA    WK V+ VR +M+ +
Sbjct: 507 GALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMMKAK 566

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +KK PG S IEV G VH F  GG  H   KEI   L ++    R QGY+  T+ VL +I
Sbjct: 567 GVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVLFDI 626

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +EE KE+A+  HSEKLA+AFGL+       I+IVK L +C DCH   K  SK+  REIV+
Sbjct: 627 EEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNREIVM 686

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH+FKDG CSC+DYW
Sbjct: 687 RDRNRFHHFKDGACSCKDYW 706


>gi|125554650|gb|EAZ00256.1| hypothetical protein OsI_22267 [Oryza sativa Indica Group]
          Length = 602

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 242/440 (55%), Gaps = 32/440 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V SW +++ G  R G +  A E+F+ MP + +VSW +MI+G+ +      AL +F +M 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             GV  N F   SAL AC   GAL  G  ++ ++  +   +   + TA+VDMY KCG ++
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF     + L TW  MI G A+HGR + A++ F +M  +G  PD    L +LTAC 
Sbjct: 283 EAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSF 460
           ++G+V     + + +   + IEP  +H+  +V+L  R GQ        D           
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 461 TKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
             LL                     L P +   YVLL+N+ A  GRW +V +VR LM  R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           ++ K+ G S IEV+G    F  G   H  A+EI++   D+++  R +GY+P T   LH++
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            EE KE AL CHSEKLA+AFGL++  P  T++I K L +C DCH   KY S++  REIV+
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD +RFH+FKDG CSC+DYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score = 43.9 bits (102), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 1/186 (0%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           +R   A+     +++     N    T  +     + +  + R+I+  +    +   +++ 
Sbjct: 209 DRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLA 268

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T ++        +D A  +FD    + L  +N +I G A +      +  F  M    V 
Sbjct: 269 TAVVDMYCKCGCVDEAWRVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVA 328

Query: 127 PNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           P+ +T   V  + A    +S GR  L+ ++ + G+E        + D++ + G+   A K
Sbjct: 329 PDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKK 388

Query: 186 VFDETP 191
           V DE P
Sbjct: 389 VIDEMP 394


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 220/717 (30%), Positives = 340/717 (47%), Gaps = 121/717 (16%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           IS +   +S+  L ++     + N+F    +   L++  S   S+  A  +FD     ++
Sbjct: 140 ISSVRCGDSSHALSRVTG--FMSNVF----VGNALVAMYSRCGSLSDARKVFDEMPVWDV 193

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
             +N +I   A+    +  +  F  M      RP+ +T   V    AS+   SLG+  H 
Sbjct: 194 VSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHG 253

Query: 154 LIVKSGVEYDAFVRVHLADMYV-------------------------------QLGKTRG 182
             V S +  + FV   L DMY                                Q+G+   
Sbjct: 254 FAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFED 313

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLID 238
           A ++F++  E+     V+ W+  I+G ++ G   +A+ +   M     K N  + +S++ 
Sbjct: 314 AVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 239 GFMRKG-----------------DLKKAGELFEQM------------------------- 256
           G    G                 DL+K G   E M                         
Sbjct: 374 GCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSL 433

Query: 257 --PEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGAL 312
              E+ VV+WT MI G+SQ+G+A KAL +  +M   D   R N FT+  AL ACA + AL
Sbjct: 434 SPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAAL 493

Query: 313 EAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
             G ++H Y   N    +   +   L+DMYAKCG+I  A LVF    EK+ +TWT+++ G
Sbjct: 494 SIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTG 553

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
             +HG  E+A+  F++M   G + DG   L +L AC +SG +   + +F+ M+ D+ + P
Sbjct: 554 YGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSP 613

Query: 432 SVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKL 463
             +H+  +V+LL R G+ +                               +  + +  K+
Sbjct: 614 GPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKI 673

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
            +L   +  SY LLSN+YA  GRWKDV R+R+LM+ + IKK PG S++E       F  G
Sbjct: 674 TELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVG 733

Query: 524 G--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLI 580
              H  AKEI+  L D M   ++ GY+P T + LH++  EEK++ L  HSEKLALA+G++
Sbjct: 734 DKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGIL 793

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            T  G  I+I K L +CGDCH+   Y S+I   EI+LRD +RFH+FK+G CSC+ YW
Sbjct: 794 TTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 127/459 (27%), Positives = 197/459 (42%), Gaps = 93/459 (20%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
            IH   +  Q++ IH +++   +  +  +T+ LIS+      + +A+S+   F P +  +
Sbjct: 34  FIHKCKTISQVKLIHQKLLSFGIL-TLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGV 92

Query: 97  F--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           +  N LIR    N     C+S F  M  LS  P+  T+PFV K+   +S +  G   H L
Sbjct: 93  YHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHAL 152

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
              +G   + FV   L  MY + G    A KVFDE P  +    V+ WN +I   +K+G 
Sbjct: 153 SRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWD----VVSWNSIIESYAKLGK 208

Query: 215 LRKAVELFGMMPK----------------------------------------KNVASWV 234
            + A+E+F  M                                          +N+    
Sbjct: 209 PKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGN 268

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF---------- 284
            L+D + + G + +A  +F  MP K VVSW AM+ G+SQ G  E A+ +F          
Sbjct: 269 CLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKM 328

Query: 285 -------------------------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
                                     QML +G++ N+ T++S LS CA VGAL  G  +H
Sbjct: 329 DVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIH 388

Query: 320 NY-------ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAMIW 370
            Y       +  N  G +  +   L+DMYAKC  ++ A  +F     KE+D++TWT MI 
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIG 448

Query: 371 GLAIHGRYEQAIQYFKKMMYSG--TEPDGTVFLAILTAC 407
           G + HG   +A++   +M      T P+       L AC
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVAC 487



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 76/296 (25%), Positives = 125/296 (42%), Gaps = 16/296 (5%)

Query: 236 LIDGFMRKGDLKKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           LI  ++  G L  A  L  + P  + GV  W ++I  +  NG A K L+ F  M      
Sbjct: 65  LISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWT 124

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            +++T      AC ++ ++  G   H       F     +G ALV MY++CG++  A  V
Sbjct: 125 PDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCGSLSDARKV 184

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQ 412
           F E    D+++W ++I   A  G+ + A++ F KM    G  PD    + +L  C   G 
Sbjct: 185 FDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGT 244

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472
             L   F       + +   +  +  V N L  +         +   F+    +  K   
Sbjct: 245 RSLGKQF-----HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFS---NMPVKDVV 296

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD-PGWSYIEVNGHVHR---FEAGG 524
           S+  +   Y+  GR++D  R+   MQ   IK D   WS   ++G+  R   +EA G
Sbjct: 297 SWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWS-AAISGYAQRGLGYEALG 351



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 121/313 (38%), Gaps = 58/313 (18%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL-------FASSRITTQLIS 71
           + S  KP N +T   ++S   S  +    ++IH   I + +          + +  QLI 
Sbjct: 357 LSSGIKP-NEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 72  SASLHKSIDYALSIFDHFTPKNLHI--FNVLIRGLAENSHFQSCISHFVFMLR--LSVRP 127
             +  K +D A ++FD  +PK   +  + V+I G +++      +     M       RP
Sbjct: 416 MYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE-YDAFVRVHLADMYVQLGKTRGAFKV 186
           N  T      + ASL+ LS+G+ +H   +++       FV   L DMY + G    A  V
Sbjct: 476 NAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLV 535

Query: 187 FDETPEKNKSESVLLWNVLING-----------------------------------CSK 211
           FD   EKN+    + W  L+ G                                   CS 
Sbjct: 536 FDNMMEKNE----VTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSH 591

Query: 212 IGYLRKAVELFGMMPKKNVAS-----WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWT 265
            G + + +E F  M      S     +  L+D   R G L  A  L E+MP E   V W 
Sbjct: 592 SGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWV 651

Query: 266 AMINGFSQNGEAE 278
           A+++    +G+ E
Sbjct: 652 ALLSCCRIHGKVE 664


>gi|194696956|gb|ACF82562.1| unknown [Zea mays]
 gi|413957085|gb|AFW89734.1| selenium-binding protein-like protein [Zea mays]
          Length = 605

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 208/626 (33%), Positives = 313/626 (50%), Gaps = 77/626 (12%)

Query: 47  LRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           LRQ H+Q+I   + + +    +L+S  +        YA  +  H    +  +FN L   L
Sbjct: 21  LRQHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYASRLLAHHPDPHPALFNPLFSAL 80

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
                 +        ML L +RP+  T+P +  S   L L++    LH L++K G     
Sbjct: 81  PT----RHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLVA---QLHALLLKLGFH--- 130

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
                    + Q      A  + +  P+       L   V   G   +            
Sbjct: 131 --------AHTQSLNALLAAYLANARPD-------LASRVFRGGGGAL------------ 163

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
               +V SW +++ G ++ G    A  LF+ MPE+ +VSW AM++G+ +      AL +F
Sbjct: 164 ----DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVF 219

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M   GV  N F   +A+ AC   GAL  G  VH ++  +   +   + TA+VDMY KC
Sbjct: 220 DEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKC 279

Query: 345 GNIEAASLVFG--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           G +E A  VF       K L TW  MI G A+HGR E A++ F +M   G  PD    + 
Sbjct: 280 GCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGEDALKLFGRMEREGVAPDDVTLVN 339

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT- 461
           +LTAC ++G +    ++F+ +   Y IEP ++H+  +V+L  R G+  +  +  Q+    
Sbjct: 340 VLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME 399

Query: 462 ---------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                      ++++L P++   YVLL+N+ A  GRW+DVARVR
Sbjct: 400 PDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVR 459

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            LM  R++ K+ G S IEV G V  F+ GG  H  A+E+++   D+M   R +GY+P T 
Sbjct: 460 RLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMARDMMREIRAEGYVPDTR 519

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH I +EEKE  L  HSEKLA+AFGL+ T PG T++I K L +C DCH   K+ S++ 
Sbjct: 520 DVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVF 579

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +R+IV+RD  RFH+FKDG CSC+DYW
Sbjct: 580 ERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 192/576 (33%), Positives = 307/576 (53%), Gaps = 63/576 (10%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N ++ G   + + +  +  F  M  L   P+++T   V  SV     L++GR +H
Sbjct: 216 NIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G+  D  V   + DMY + G   G  K+FDE           + N  I G S+ 
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETG----VCNAYITGLSRN 331

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G + KA+E+FG+                             EQ  E  VVSWT++I G +
Sbjct: 332 GLVDKALEMFGLFK---------------------------EQKMELNVVSWTSIIAGCA 364

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG+  +AL +F +M  AGV+ N  T+ S L AC  + AL  G   H +           
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVH 424

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G+AL+DMYAKCG I+ + +VF     K+L+ W +++ G ++HG+ ++ +  F+ +M + 
Sbjct: 425 VGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTR 484

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +PD   F ++L+AC   G       +F+ M  +Y I+P ++H++ +VNLL R G+  + 
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544

Query: 453 YQ------------------NS---QNSFT-------KLLQLKPKHPSSYVLLSNIYAAE 484
           Y                   NS   QN+         KL  L+P++P +YVL+SNIYAA+
Sbjct: 545 YDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAAK 604

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGA 542
           G W +V  +R  M+   +KK+PG S+I+V   V+   A    H    +I  K+++I    
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEEM 664

Query: 543 REQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           R+ G+ P  ++ L +++E+++E  L  HSEKLA+ FGL+ T  GT ++++K L ICGDCH
Sbjct: 665 RKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCH 724

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +++K+ S  + REI +RDT RFH+FKDG CSC D+W
Sbjct: 725 AVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 5/216 (2%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LI  +        A  + + +P+  V S++++I   ++     +++ +F +M   G+  +
Sbjct: 56  LIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGLIPD 115

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
              + +    CA++ A +AG ++H     +   +   +  +L  MY +CG +  A  VF 
Sbjct: 116 THVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFD 175

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
              EKD++T +A++ G A  G  E+ ++   +M  SG EP+   +  IL+    SG  K 
Sbjct: 176 RMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKE 235

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           A+  F  M    F    V     V ++L  VG DS+
Sbjct: 236 AVIMFQKMHHLGFCPDQV----TVSSVLPSVG-DSE 266



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 56/229 (24%), Positives = 105/229 (45%), Gaps = 17/229 (7%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHI----FNVLIRGLAENSHFQSCISHFVFM 120
           +    I+  S +  +D AL +F  F  + + +    +  +I G A+N      +  F  M
Sbjct: 320 VCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREM 379

Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
               V+PNR+T P +  +  +++ L  GR  H   V+  +  D  V   L DMY + G+ 
Sbjct: 380 QVAGVKPNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRI 439

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSL 236
           + +  VF+  P KN    ++ WN L+NG S  G  ++ + +F  +     K +  S+ SL
Sbjct: 440 KMSQIVFNMMPTKN----LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSL 495

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAEKA 280
           +    + G   +  + F  M E+  +      ++ M+N   + G+ ++A
Sbjct: 496 LSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 184/546 (33%), Positives = 295/546 (54%), Gaps = 70/546 (12%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +RP+   +  + K+ A+L  + LG+ +HC  + S    D  V+  L DMY +        
Sbjct: 38  LRPDDFVFSALVKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKC------- 90

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           ++ D                    C+K         +F  +  KN  SW +++ G+ + G
Sbjct: 91  RLLD--------------------CAK--------AVFDSIRVKNTISWTAMVSGYAKSG 122

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL- 303
             ++A ELF ++P K + SWTA+I+GF Q+G+  +A ++F +M    V   D  V+S++ 
Sbjct: 123 RKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIV 182

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA + A  AG +VH  +    F     I  AL+DMYAKC ++ AA  +F   + +D++
Sbjct: 183 GACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVV 242

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +WT++I G+A HG+ E+A+  + +M+  G +P+   F+ ++ AC + G V      F SM
Sbjct: 243 SWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQSM 302

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVG-----------------------------QDSQGYQ 454
             DY I PS++H+T +++LL R G                             +  QG  
Sbjct: 303 TKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQM 362

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
             + +   +   KPK PS+Y+LLSNIYA+   W  V+  R  +    ++KDPG+S +EV 
Sbjct: 363 GVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVEVR 422

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNIKE-EKEEALGCHS 570
                F AG   H L ++I   L+ +    R   GY+P T W+LH++ E EKE+ L  HS
Sbjct: 423 KETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHS 482

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGT 629
           E+ A+A+GL++  PGT I+IVK L +CGDCH ++K+ S+I++REI++RD TR+H+FK G 
Sbjct: 483 ERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGK 542

Query: 630 CSCRDY 635
           CSC D+
Sbjct: 543 CSCNDF 548



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 94/174 (54%), Gaps = 13/174 (7%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKAL-AMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           MP +  ++W +++   +Q   + K L         +G+R +DF   + + ACA +G+++ 
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G +VH +   +++     + ++LVDMYAKC  ++ A  VF   + K+ ++WTAM+ G A 
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 375 HGRYEQAIQYFKKM----MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
            GR E+A++ F+++    +YS T        A+++    SG+   A + F  MR
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWT--------ALISGFVQSGKGLEAFSVFTEMR 166



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 148/358 (41%), Gaps = 55/358 (15%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S K  +Q+H   I+        + + L+   +  + +D A ++FD    KN   +  ++ 
Sbjct: 57  SIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVS 116

Query: 103 GLAENSH------------------FQSCISHFV--------FMLRLSVRPNRLTY--PF 134
           G A++                    + + IS FV        F +   +R  R+    P 
Sbjct: 117 GYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPL 176

Query: 135 VSKSV----ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           V  S+    A+L+    GR +H L++  G +   F+   L DMY +      A  +F   
Sbjct: 177 VLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIF--- 233

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDL 246
             + +   V+ W  LI G ++ G   KA+ L+  M     K N  ++V LI      G +
Sbjct: 234 -SRMRHRDVVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFV 292

Query: 247 KKAGELFEQMPE-----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
            K  ELF+ M +       +  +T +++   ++G  ++A  +   M       ++ T  +
Sbjct: 293 AKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM---PFPPDEPTWAA 349

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            LSAC + G  + GVR+ +++  + F  K          Y    NI A++ ++G+  E
Sbjct: 350 LLSACKRQGQGQMGVRIADHL-VSSFKPKDP------STYILLSNIYASASLWGKVSE 400


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 166/420 (39%), Positives = 256/420 (60%), Gaps = 32/420 (7%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F++ P K  V+W+AMI G+++ G + +A+ +F +M   GV  ++ T+VS LSACA 
Sbjct: 286 AKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACAD 345

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GALE G  + +YI   +      +  AL+DM+AKCG+++ A  VF E K + +++WT+M
Sbjct: 346 LGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSM 405

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I GLA+HGR  +A+  F +MM  G +PD   F+ +L+AC +SG V     +F++M   + 
Sbjct: 406 IVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFS 465

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------------SQNSF 460
           I P ++H+  +V++LSR G+ ++  +                              ++  
Sbjct: 466 IVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVA 525

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            +L++ +P H S+YVLLSNIYA   RW+   +VR +M  + ++K PG + IE+N  ++ F
Sbjct: 526 KELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEF 585

Query: 521 EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAF 577
            AG   H   KEI+  +E++    +  GY+P T  VL +I EE KE+AL  HSEKLA+AF
Sbjct: 586 VAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAF 645

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            L+ T PGT I+IVK L +C DCHS  K+ SK+  REIV+RD  RFH+FK+G CSC D+W
Sbjct: 646 ALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 76/167 (45%), Gaps = 8/167 (4%)

Query: 257 PEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           P      +  +I  F+Q   ++  AL  +  M    V  N FT    L ACA +  LE G
Sbjct: 187 PSHDAFLFNTLIRAFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELG 246

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKC------GNIEAASLVFGETKEKDLLTWTAMI 369
             VH  +    F     +   LV MY  C      G + A   VF E+  KD +TW+AMI
Sbjct: 247 GAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKK-VFDESPVKDSVTWSAMI 305

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
            G A  G   +A+  F++M  +G  PD    +++L+AC   G ++L 
Sbjct: 306 GGYARAGNSARAVTLFREMQVTGVCPDEITMVSVLSACADLGALELG 352


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 193/610 (31%), Positives = 301/610 (49%), Gaps = 75/610 (12%)

Query: 67  TQLISSASLHKSIDYALSIFDHF----TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
           + LI++ + H   + A  + +         N+  +N L+ GL  +   +  +   V M  
Sbjct: 90  SALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG 149

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
               P+         +V  +  +++G  LH  +VK+G   DA V   L DMY + G+   
Sbjct: 150 EGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADE 209

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
             +VFDE+   +                                   VAS  +L+ G  R
Sbjct: 210 IVRVFDESSHMD-----------------------------------VASCNALVAGLSR 234

Query: 243 KGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
              + +A  LF +   +G    VVSWT+++    QNG   +A+ +F +M   G+  N  T
Sbjct: 235 NAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVT 294

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +   L A A + AL  G   H +     F     +G+ALVDMYAKCG +  A ++F    
Sbjct: 295 IPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMP 354

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +++++W AMI G A+HG  E A++ F+ M  S  +PD   F  +L AC  +G  +   +
Sbjct: 355 YRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRS 414

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------------------- 455
           +F+ M+  + I P ++H+  +V LL R G+    Y                         
Sbjct: 415 YFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVH 474

Query: 456 -----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                ++ +   L QL+P++  +YVLLSNIYA++  W  V R+R +M+   +KK+ G S+
Sbjct: 475 GNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSW 534

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALG 567
           IE+   VH   AG   H +   I  KL+ +    R  G+ P T++VLH+++E EK++ L 
Sbjct: 535 IEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILS 594

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
            HSEKLA+A GLI T+ GT ++++K L ICGDCH  MK+ S   +REI +RDT RFH+FK
Sbjct: 595 VHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFK 654

Query: 627 DGTCSCRDYW 636
           DG CSC DYW
Sbjct: 655 DGKCSCADYW 664



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 147/350 (42%), Gaps = 47/350 (13%)

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
           GV  DAFV   L   Y++ G T  A  V D                              
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDG----------------------------- 80

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQN 274
                 MP + V  W +LI      GD + A  L E+M   GV    ++W  +++G +++
Sbjct: 81  ------MPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRS 134

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G A  A+    +M   G   +   V  ALSA   VG +  G ++H Y+      L   + 
Sbjct: 135 GRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVA 194

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           TAL+DMY KCG  +    VF E+   D+ +  A++ GL+ + +  +A++ F++ +  G E
Sbjct: 195 TALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIE 254

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
            +   + +I+  C  +G+   A++ F  M+ +  IEP+      V+   + +     G  
Sbjct: 255 LNVVSWTSIVACCVQNGRDLEAVDLFREMQSEG-IEPNSVTIPCVLPAFANIAALMHGRS 313

Query: 455 NSQNSFTKLLQLKPKHPSSYV--LLSNIYAAEGRWKDVARVRTLMQRRSI 502
               S  K       H   YV   L ++YA  GR +D   +   M  R++
Sbjct: 314 AHCFSLRKGF-----HHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNV 358



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/283 (21%), Positives = 112/283 (39%), Gaps = 48/283 (16%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H  ++       + + T LI         D  + +FD  +  ++   N L+ GL+ N+
Sbjct: 177 QLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNA 236

Query: 109 HFQS--------------------------CISH---------FVFMLRLSVRPNRLTYP 133
                                         C+ +         F  M    + PN +T P
Sbjct: 237 QVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIP 296

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
            V  + A+++ L  GR  HC  ++ G  +D +V   L DMY + G+ R A  +F+  P +
Sbjct: 297 CVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR 356

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKA 249
           N    V+ WN +I G +  G    AV LF  M     K ++ ++  ++    + G  ++ 
Sbjct: 357 N----VVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEG 412

Query: 250 GELFEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQM 287
              F +M  K  +S     +  M+    + G+ + A  +  QM
Sbjct: 413 RSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQM 455


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 193/556 (34%), Positives = 296/556 (53%), Gaps = 71/556 (12%)

Query: 117 FVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYV 175
           F+ M+R+S   PNR T+ FV K+  +   +  G  +    +K G+E + FV   +  MY 
Sbjct: 19  FLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYA 78

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
             G    A +VFD             W++                       +++ SW  
Sbjct: 79  NWGLVDEARRVFD-------------WSL----------------------DQDLYSWNI 103

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           +I G++  G++ +A E+F++M E+ VVSWT +I G+ Q G  ++AL +F +ML  G   N
Sbjct: 104 MIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPN 163

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           +FT+ SAL+ACA + AL+ G  +H YI  ++  +   +  +L+DMYAKCG I+ A+ VF 
Sbjct: 164 EFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFH 223

Query: 356 ETKEKDL--LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           +     L    W AMI G A+HG+ ++AI  F++M      P+   F+A+L AC +   V
Sbjct: 224 DEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLV 283

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------------------- 447
           +    +F SM   Y IEP ++H+  +V+LL R G                          
Sbjct: 284 EEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLG 343

Query: 448 --QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
             +  +  +  Q     + +L   H   +VLL+N+Y+A G+W +   VR  ++    KK 
Sbjct: 344 ACRIHKDIERGQRIGKIIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKT 403

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEE 561
           PG S IE+NG  H+F  G   H   K+++  L+++    +  GY+P    VL +I  +E+
Sbjct: 404 PGCSSIELNGVFHQFLVGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEED 463

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           KE AL  HSEKLA+AFGLI T PGT I+IVK L +C DCH   K+ SK+ +REI++RD  
Sbjct: 464 KETALSKHSEKLAIAFGLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRI 523

Query: 621 RFHYFKDGTCSCRDYW 636
           R+H+FKDG CSC+DYW
Sbjct: 524 RYHHFKDGFCSCKDYW 539



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 19/287 (6%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            I  A  +FD  + +++  +  +I G  +   F+  +  F  ML+    PN  T      
Sbjct: 113 EIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPPPNEFTLASALA 172

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF-DETPEKNKS 196
           + A+L  L  GR +H  I KS ++ +  +   L DMY + G+   A KVF DE   K K 
Sbjct: 173 ACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLK- 231

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
             V  WN +I G +  G  ++A++LF  M  + V+    ++V+L++       +++    
Sbjct: 232 --VWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGY 289

Query: 253 FEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA-LSAC 306
           F+ M      E  +  +  M++   ++G  ++A    F M      A D T+  A L AC
Sbjct: 290 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNM----PMAPDATIWGALLGAC 345

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
                +E G R+   I   D    G     L ++Y+  G  + A  V
Sbjct: 346 RIHKDIERGQRIGKIIKELDSDHIGC-HVLLANLYSASGQWDEAKAV 391



 Score = 39.7 bits (91), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 45/189 (23%), Positives = 78/189 (41%), Gaps = 8/189 (4%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P N  T    ++   +  +  Q R IH  I    +  + R+   L+   +    ID+A  
Sbjct: 161 PPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAK 220

Query: 85  IF-DHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           +F D +  K  +  +N +I G A +   +  I  F  M    V PN++T+  +  + +  
Sbjct: 221 VFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHG 280

Query: 143 SLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSESVL 200
            L+  GRG    +  S G+E +     H   M   LG++ G  K  +ET      +    
Sbjct: 281 KLVEEGRGYFKSMASSYGIEPEI---EHYGCMVDLLGRS-GLLKEAEETVFNMPMAPDAT 336

Query: 201 LWNVLINGC 209
           +W  L+  C
Sbjct: 337 IWGALLGAC 345


>gi|115467246|ref|NP_001057222.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|51535413|dbj|BAD37283.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595262|dbj|BAF19136.1| Os06g0231400 [Oryza sativa Japonica Group]
 gi|125596589|gb|EAZ36369.1| hypothetical protein OsJ_20697 [Oryza sativa Japonica Group]
          Length = 602

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/440 (37%), Positives = 242/440 (55%), Gaps = 32/440 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V SW +++ G  R G +  A E+F+ MP + +VSW +MI+G+ +      AL +F +M 
Sbjct: 163 DVVSWTTMVGGLCRLGLVDDAREVFDAMPARNLVSWNSMISGYVKADRFLDALEVFDEMR 222

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             GV  N F   SAL AC   GAL  G  ++ ++  +   +   + TA+VDMY KCG ++
Sbjct: 223 ALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLATAVVDMYCKCGCVD 282

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF     + L TW  MI G A+HGR + A++ F +M  +G  PD    L +LTAC 
Sbjct: 283 EAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVAPDDVTLLNVLTACA 342

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSF 460
           ++G+V     + + +   + IEP  +H+  +V+L  R GQ        D           
Sbjct: 343 HAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKKVIDEMPMDPDLAVL 402

Query: 461 TKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
             LL                     L P +   YVLL+N+ A  GRW +V +VR LM  R
Sbjct: 403 GALLGACKIHGDVDLGEAIGWRVIDLDPDNSGRYVLLANLLAGAGRWDEVGKVRRLMDER 462

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           ++ K+ G S IEV+G    F  G   H  A+EI++   D+++  R +GY+P T   LH++
Sbjct: 463 NVSKEAGRSVIEVDGEACEFRCGNLRHPQAREIYAMAVDMVSRIRAEGYVPDTGEALHDV 522

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            EE KE AL CHSEKLA+AFGL++  P  T++I K L +C DCH   KY S++  REIV+
Sbjct: 523 AEEDKEAALLCHSEKLAIAFGLLRARPRETLRITKNLRVCRDCHEATKYVSRVFGREIVV 582

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD +RFH+FKDG CSC+DYW
Sbjct: 583 RDRSRFHHFKDGMCSCKDYW 602



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 1/186 (0%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           +R   A+     +++     N    T  +     + +  + R+I+  +    +   +++ 
Sbjct: 209 DRFLDALEVFDEMRALGVEGNGFVATSALVACTGAGALGRGREIYRWVEQSGIEVDAKLA 268

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T ++        +D A  +FD    + L  +N +I G A +      +  F  M    V 
Sbjct: 269 TAVVDMYCKCGCVDEAWGVFDSLPARGLTTWNCMIGGFAVHGRCDDALELFHQMEAAGVA 328

Query: 127 PNRLTYPFVSKSVASLSLLSLGRG-LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           P+ +T   V  + A    +S GR  L+ ++ + G+E        + D++ + G+   A K
Sbjct: 329 PDDVTLLNVLTACAHAGEVSEGRRYLNHIVSRHGIEPKGEHYGCMVDLFGRAGQLDEAKK 388

Query: 186 VFDETP 191
           V DE P
Sbjct: 389 VIDEMP 394


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 199/591 (33%), Positives = 305/591 (51%), Gaps = 67/591 (11%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           +++ A  +F+    K+L  ++ LI    +N  ++  +  F  M    +  + +    V  
Sbjct: 238 NVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLS 297

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + + L ++  G+ +H L+VK G+E    ++  L  MY    +   A K+F        SE
Sbjct: 298 ACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLF--------SE 349

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           S  L  +                           SW S+I G+++ G+++KA  LF+ MP
Sbjct: 350 SCCLDQI---------------------------SWNSMISGYVKCGEIEKARALFDSMP 382

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +K  VSW+AMI+G++Q     + L +F +M   G + ++  +VS +SAC  + AL+ G  
Sbjct: 383 DKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKW 442

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H YI  N   +   +GT L++MY K G +E A  VF   +EK + TW A+I GLA++G 
Sbjct: 443 IHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGL 502

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            +++++ F +M   G  P+   F+A+L AC + G V      F+SM  ++ I P++KH+ 
Sbjct: 503 VDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYG 562

Query: 438 VVVNLLSRVGQDSQGYQ----------------------------NSQNSFTKLLQLKPK 469
            +V+LL R G   +  +                              +    KL++L P 
Sbjct: 563 CMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPD 622

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKL 527
           H    VLLSNIYA++G W DV  VR +M++  + K PG S IE +G VH F AG   H  
Sbjct: 623 HDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQ 682

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGT 586
            + I   L+++    + +GY P T  V  +I +EEKE  L  HSEKLA+AFGLI   P T
Sbjct: 683 NEHIEHMLDEMAKKLKLEGYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPT 742

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            I+IVK L IC DCH+  K  SK   REIV+RD  RFH+FK G+CSC DYW
Sbjct: 743 PIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/413 (29%), Positives = 212/413 (51%), Gaps = 43/413 (10%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIF 86
           I ETH+        + KQ  QI +Q+IL   F  S   ++L+  S+     +I+ +  IF
Sbjct: 28  ILETHL----QKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIF 83

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            H    N  I N +++G  + +     I  + FML  +V  +  TYP + +S  S+ L  
Sbjct: 84  SHIENPNGFICNTMMKGYMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQS-CSIRLAE 142

Query: 147 L-GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +   ++K G + D +++  L +MY   G    A KVFD +   +    ++ WN +
Sbjct: 143 FDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLD----MVSWNSM 198

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           + G   +G + +A +++  MP++NV +  S+I  F +KG++++A +LF +M +K +VSW+
Sbjct: 199 LAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWS 258

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV-----GALEAGVRV-- 318
           A+I+ + QN   E+AL +F +M   G+  ++  V+S LSAC+++     G L  G+ V  
Sbjct: 259 ALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACSRLLVVITGKLVHGLVVKV 318

Query: 319 -------------HNYISCNDF-----------GLKGAIGTALVDMYAKCGNIEAASLVF 354
                        H Y SC +             L      +++  Y KCG IE A  +F
Sbjct: 319 GIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALF 378

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
               +KD ++W+AMI G A   R+ + +  F++M   GT+PD T+ +++++AC
Sbjct: 379 DSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISAC 431



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 102/243 (41%), Gaps = 26/243 (10%)

Query: 31  ETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           ET ++S+I +      L Q   IHA I  + L  +  + T LI+       ++ AL +F 
Sbjct: 421 ETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFK 480

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               K +  +N LI GLA N      +  F  M    V PN +T+  V  +   + L+  
Sbjct: 481 GLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDE 540

Query: 148 G-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           G R  + +I +  +  +      + D+  + G  + A ++ +  P    +  V  W  L+
Sbjct: 541 GHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMP---MAPDVSTWGALL 597

Query: 207 NGCSKIG-------YLRKAVEL------FGMMPKKNVAS---WVSLID--GFMRK-GDLK 247
             C K G         RK VEL      F ++     AS   WV +++  G MR+ G +K
Sbjct: 598 GACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVK 657

Query: 248 KAG 250
             G
Sbjct: 658 TPG 660


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 199/651 (30%), Positives = 322/651 (49%), Gaps = 104/651 (15%)

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
           F P N+  +  LI G  +N +    +S F  M+   V+PN +T      +  +LSLL  G
Sbjct: 323 FKP-NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 381

Query: 149 RGLHCLIVK-SGVEYDAFVRVHLADMYVQL------------------------------ 177
           R +H   +K   ++ D  V   L D Y +                               
Sbjct: 382 REIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYAL 441

Query: 178 -GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK--- 227
            G    A ++  E   +     ++ WN L+ G ++ G  + A+E F      GM P    
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 228 -----------------KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMP 257
                            K +  +V             +LI  +     L+ A  +F ++ 
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELS 561

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            + VV W ++I+  +Q+G +  AL +  +M  + V  N  T+VSAL AC+K+ AL  G  
Sbjct: 562 TRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKE 621

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H +I          I  +L+DMY +CG+I+ +  +F    ++DL++W  MI    +HG 
Sbjct: 622 IHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGF 681

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
              A+  F++    G +P+   F  +L+AC +SG ++    +F  M+ +Y ++P+V+ + 
Sbjct: 682 GMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYA 741

Query: 438 VVVNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPK 469
            +V+LLSR GQ ++  +                             ++ +   L +L+P+
Sbjct: 742 CMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQ 801

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
              +YVL++NIY+A GRW+D A++R LM+ R + K PG S+IEV   +H F  G   H L
Sbjct: 802 SSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPL 861

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGT 586
            ++I +K+E +    +E GY+P T +VL ++ E EKE +L  HSEK+ALAFGLI TT GT
Sbjct: 862 MEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGT 921

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            ++I+K L +CGDCHS  K+ SK+ +R+I++RD  RFH+F DG CSC DYW
Sbjct: 922 PLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 204/385 (52%), Gaps = 14/385 (3%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HAQ++++ +     + ++L+        ++ A  +FD  + +N+  +  ++       
Sbjct: 110 QVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLG 169

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            ++  I  F  M+   VRP+   +P V K+ + L    +G+ ++  ++  G E ++ V+ 
Sbjct: 170 DYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 229

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
            + DM+++ G+   A + F+E   K+    V +WN++++G +  G  +KA++    M   
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKD----VFMWNIMVSGYTSKGEFKKALKCISDMKLS 285

Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEK 279
             K +  +W ++I G+ + G  ++A + F +M      +  VVSWTA+I G  QNG   +
Sbjct: 286 GVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFE 345

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTALV 338
           AL++F +M+  GV+ N  T+ SA+SAC  +  L  G  +H Y I   +      +G +LV
Sbjct: 346 ALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLV 405

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           D YAKC ++E A   FG  K+ DL++W AM+ G A+ G +E+AI+   +M + G EPD  
Sbjct: 406 DYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDII 465

Query: 399 VFLAILTACWYSGQVKLALNFFDSM 423
            +  ++T     G  K AL FF  M
Sbjct: 466 TWNGLVTGFTQYGDGKAALEFFQRM 490



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/294 (24%), Positives = 143/294 (48%), Gaps = 9/294 (3%)

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--NVASWVS--LIDGFMRKGDLKKA 249
           N  E + ++  ++  C K+  LR   ++   +     +V  ++   L++ + + G ++ A
Sbjct: 84  NPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDA 143

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             +F++M E+ V SWTA++  +   G+ E+ + +F+ M++ GVR + F       AC+++
Sbjct: 144 RRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSEL 203

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
                G  V++Y+    F     +  +++DM+ KCG ++ A   F E + KD+  W  M+
Sbjct: 204 KNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMV 263

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G    G +++A++    M  SG +PD   + AI++    SGQ + A  +F  M      
Sbjct: 264 SGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDF 323

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
           +P+V   T ++      G +  GY     S  + + L+   P+S  + S + A 
Sbjct: 324 KPNVVSWTALI-----AGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSAC 372



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 130/320 (40%), Gaps = 83/320 (25%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  + +    L  L LG  +H  +V +GV+   F+   L ++Y Q G    A ++FD+  
Sbjct: 92  YASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMS 151

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------------PK------------ 227
           E+N    V  W  ++     +G   + ++LF +M            PK            
Sbjct: 152 ERN----VFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYR 207

Query: 228 --KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
             K+V  ++             S++D F++ G +  A   FE++  K V  W  M++G++
Sbjct: 208 VGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYT 267

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
             GE +KAL     M  +GV+ +  T                                  
Sbjct: 268 SKGEFKKALKCISDMKLSGVKPDQVT---------------------------------- 293

Query: 333 IGTALVDMYAKCGNIEAASLVFGETK-----EKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
              A++  YA+ G  E AS  F E       + ++++WTA+I G   +G   +A+  F+K
Sbjct: 294 -WNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 388 MMYSGTEPDGTVFLAILTAC 407
           M+  G +P+     + ++AC
Sbjct: 353 MVLEGVKPNSITIASAVSAC 372



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 121/249 (48%), Gaps = 13/249 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IH  ++ +++  S+ + + LIS  S   S++ A S+F   + +++ ++N +I   A++
Sbjct: 519 KEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQS 578

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
               + +     M   +V  N +T      + + L+ L  G+ +H  I++ G++   F+ 
Sbjct: 579 GRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFIL 638

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----G 223
             L DMY + G  + + ++FD  P+++    ++ WNV+I+     G+   AV LF     
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRD----LVSWNVMISVYGMHGFGMDAVNLFQQFRT 694

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAE 278
           M  K N  ++ +L+      G +++  + F+ M      +  V  +  M++  S+ G+  
Sbjct: 695 MGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFN 754

Query: 279 KALAMFFQM 287
           + L    +M
Sbjct: 755 ETLEFIEKM 763


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 194/573 (33%), Positives = 294/573 (51%), Gaps = 78/573 (13%)

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           K    L+ L+ G+ +H L++ S    D  ++  L ++Y + G    A K+FDE      S
Sbjct: 23  KRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEM----SS 78

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK---------------------- 228
             V+ W  LI G S+    + A+ L       G+ P +                      
Sbjct: 79  RDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGR 138

Query: 229 -------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                        NV    +++D + R   L++A  +F+ M  K  VSW A+I G+++ G
Sbjct: 139 QLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKG 198

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
           + +KA  +F  ML   V+   FT  S L ACA +G+LE G  VH  +      L   +G 
Sbjct: 199 QGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGN 258

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
            L+DMYAK G+IE A  VF    ++D+++W +M+ G + HG  + A+Q F++M+ +   P
Sbjct: 259 TLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAP 318

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
           +   FL +LTAC ++G +    ++FD M+  Y +EP + H+  +V+LL R G   +  Q 
Sbjct: 319 NDITFLCVLTACSHAGLLDEGRHYFDMMK-KYNVEPQISHYVTMVDLLGRAGHLDRAIQF 377

Query: 456 SQNSFTK----------------------------LLQLKPKHPSSYVLLSNIYAAEGRW 487
                 K                            + +L   +P ++VLL NIYA  GRW
Sbjct: 378 ISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYALAGRW 437

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
            D A+VR +M+   +KK+P  S++E+   VH F A    H   +EIH+  E I    +E 
Sbjct: 438 NDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDKIKEI 497

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY+P +  VL  + ++E+E  L  HSEKLALAF L+ T PG+TI+I K + ICGDCHS  
Sbjct: 498 GYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDCHSAF 557

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K+ SK+ +REI++RDT RFH+F DG CSC DYW
Sbjct: 558 KFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 170/376 (45%), Gaps = 61/376 (16%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNV 99
            L +++   I+H L  +SR    L+   +L         + YA  +FD  + +++  +  
Sbjct: 27  HLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTA 86

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS---VASLSLLSLGRGLHCLIV 156
           LI G +++   Q  +     MLR+ ++PN+ T   + K+   V S  +L  GR LH L +
Sbjct: 87  LITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ-GRQLHGLCL 145

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           + G + + +V   + DMY +      A  +FD    KN+    + WN LI G ++ G   
Sbjct: 146 RYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNE----VSWNALIAGYARKGQGD 201

Query: 217 KAVELFGMMPKKNV----------------------ASWV-----------------SLI 237
           KA  LF  M ++NV                        WV                 +L+
Sbjct: 202 KAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTLL 261

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G ++ A ++F+++ ++ VVSW +M+ G+SQ+G  + AL  F +ML   +  ND 
Sbjct: 262 DMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDI 321

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFG 355
           T +  L+AC+  G L+ G   H +     + ++  I     +VD+  + G+++ A     
Sbjct: 322 TFLCVLTACSHAGLLDEG--RHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDRAIQFIS 379

Query: 356 ETKEKDLLTWTAMIWG 371
           E   K     TA +WG
Sbjct: 380 EMPIKP----TAAVWG 391



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 124/230 (53%), Gaps = 10/230 (4%)

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKK 248
           KN + +  + + L+  C+ +  L +   +  ++     + ++    +L++ + + GDL  
Sbjct: 9   KNNAGAREICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVY 68

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A +LF++M  + VV+WTA+I G+SQ+   + AL +  +ML  G++ N FT+ S L A + 
Sbjct: 69  ARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASG 128

Query: 309 VGALEA--GVRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           VG+ +   G ++H    C  +G      +  A++DMYA+C ++E A L+F     K+ ++
Sbjct: 129 VGSTDVLQGRQLHGL--CLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVS 186

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
           W A+I G A  G+ ++A   F  M+    +P    + ++L AC   G ++
Sbjct: 187 WNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLE 236



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/268 (26%), Positives = 112/268 (41%), Gaps = 44/268 (16%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           S    Q RQ+H   + +   ++  ++  ++   +    ++ A  IFD    KN   +N L
Sbjct: 131 STDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNAL 190

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           I G A           F  MLR +V+P   TY  V  + AS+  L  G+ +H L++K G 
Sbjct: 191 IAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGE 250

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------ 208
           +  AFV   L DMY + G    A KVFD   +++    V+ WN ++ G            
Sbjct: 251 KLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRD----VVSWNSMLTGYSQHGLGKVALQ 306

Query: 209 -----------------------CSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFM 241
                                  CS  G L +    F MM K NV    + +V+++D   
Sbjct: 307 RFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLG 366

Query: 242 RKGDLKKAGELFEQMPEKGVVS-WTAMI 268
           R G L +A +   +MP K   + W A++
Sbjct: 367 RAGHLDRAIQFISEMPIKPTAAVWGALL 394


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 211/675 (31%), Positives = 354/675 (52%), Gaps = 94/675 (13%)

Query: 45   KQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
            ++ R++HA ++   +++    ++  L++  +   +ID A  +F     ++   +N +I  
Sbjct: 399  RKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITA 458

Query: 104  LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            L +N + ++ + ++  M + S+ P+         S A L LL+ G+ LHC  VK G+  D
Sbjct: 459  LDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLD 518

Query: 164  AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN-GCSKIGYLRKAVELF 222
              V   L  MY + G+    +++F+       +  V+ WN ++    S    + ++V++F
Sbjct: 519  TSVSNALVKMYGECGRMSECWEIFNSM----SAHDVVSWNSIMGVMASSQAPITESVQVF 574

Query: 223  ------GMMPKK---------------------------------NVASWVSLIDGFMRK 243
                  G++P K                                 + A   +L+  + + 
Sbjct: 575  SNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYAKS 634

Query: 244  GDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            GD+     LF +M   +  +SW +MI+G+  NG  ++A+     M+ +    +  T    
Sbjct: 635  GDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFSIV 694

Query: 303  LSACAKVGALEAGVRVHNYISCNDFGLKG------AIGTALVDMYAKCGNIEAASLVFGE 356
            L+ACA V ALE G+ +H       FGL+        + +ALVDMY+KCG I+ AS VF  
Sbjct: 695  LNACASVAALERGMEMHA------FGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHS 748

Query: 357  TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              +K+  +W +MI G A HG   +A++ F++M  SG  PD   F+++L+AC ++G V+  
Sbjct: 749  MSQKNEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERG 808

Query: 417  LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY--------------------Q 454
            L++F+ M  DY I P ++H++ V++LL R G+    Q Y                    Q
Sbjct: 809  LDYFELME-DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQ 867

Query: 455  NSQN---------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
             S++         +   LL+L+P++P +YVL S  +AA GRW+D A+ R  M+  ++KK+
Sbjct: 868  QSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKE 927

Query: 506  PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKE 563
             G S++ +   VH F AG   H   KEI+ KL  ++   R  GY+P TE+VLH+++EE +
Sbjct: 928  AGRSWVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENK 987

Query: 564  EALG-CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
            E L   HSEKLA+AF L +++ G  I+I+K L +CGDCH+  +Y S+I  R+I+LRD+ R
Sbjct: 988  EELLRYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIR 1047

Query: 622  FHYFKDGTCSCRDYW 636
            FH+FKDG CSC DYW
Sbjct: 1048 FHHFKDGKCSCGDYW 1062



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 107/456 (23%), Positives = 184/456 (40%), Gaps = 67/456 (14%)

Query: 55  ILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
           + H+LF    +   L++S +    +D A  +FD    +N   +  LI G   +   +   
Sbjct: 96  LTHDLF----LANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAF 151

Query: 115 SHFVFMLR--LSVRPNRLTYPFVSKSVASLSLLSLGRGL--HCLIVKSGVEYDAFVRVHL 170
             F  MLR     RP   T+  V ++        LG  +  H L+ K+    +  V   L
Sbjct: 152 PLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNAL 211

Query: 171 ADMY--VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG-------------YL 215
             MY    +G    A +VFD TP ++    ++ WN L++  +K G             Y 
Sbjct: 212 ISMYGSCSVGPPILAQRVFDTTPVRD----LITWNALMSVYAKRGDAICTFTLFRAMQYD 267

Query: 216 RKAVEL------FGMMPKKNVASWVSL-------------------------IDGFMRKG 244
              +EL      FG +      S  SL                         +  F R G
Sbjct: 268 DSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHG 327

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            L +A +++  + E+  V+   +I G  +    E A  +F    D+    N  T V  LS
Sbjct: 328 MLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAA-VNVDTYVVLLS 386

Query: 305 ACAKVGALEAGVR----VHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           A A+    E G+R    VH ++        K A+   LV+MYAKCG I+ A  VF   + 
Sbjct: 387 AIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEA 446

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           +D ++W  +I  L  +G  E A+  +  M  +   P     ++ L++C   G +      
Sbjct: 447 RDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQL 506

Query: 420 F-DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
             D++++  +++ SV +   +V +    G+ S+ ++
Sbjct: 507 HCDAVKWGLYLDTSVSN--ALVKMYGECGRMSECWE 540



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 132/280 (47%), Gaps = 13/280 (4%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           +T ++   +N+  S    N +T  + ++ +   +  +  +QIH+ ++ H +   + +   
Sbjct: 567 ITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNA 626

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127
           L+S  +    +D    +F   + +   I +N +I G   N H Q  +     M+      
Sbjct: 627 LMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMM 686

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +  T+  V  + AS++ L  G  +H   ++S +E D  V   L DMY + G+   A KVF
Sbjct: 687 DHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVF 746

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRK 243
               +KN+      WN +I+G ++ G  RKA+E+F  M +   +    ++VS++      
Sbjct: 747 HSMSQKNE----FSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHA 802

Query: 244 GDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEK 279
           G +++  + FE M + G++     ++ +I+   + GE +K
Sbjct: 803 GLVERGLDYFELMEDYGILPRIEHYSCVIDLLGRAGELDK 842


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 321/639 (50%), Gaps = 67/639 (10%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   L+ +   H  +  A  +F     K+   +N ++ G ++       +  F  M R  
Sbjct: 172 VCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG 231

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +     T+  +    A ++ L LG  +H L+++S    + FV   L D Y +        
Sbjct: 232 IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMR 291

Query: 185 KVFDETPEK-NKSESVLLWNVLINGCS-----------KIGYLRKAV------ELFGMMP 226
           ++FDE PE+ N S +V++     N C+           K+G+ R+ +       + G +P
Sbjct: 292 RLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLP 351

Query: 227 KKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
             ++   +                 +LID + + G L  A   F    EK  +SWTA+I 
Sbjct: 352 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 411

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+ QNG+ E+AL +F  M  AG+R +  T  S + A + +  +  G ++H+Y+  + +  
Sbjct: 412 GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 471

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
               G+ LVDMYAKCG ++ A   F E  E++ ++W A+I   A +G  + AI+ F+ M+
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 531

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
           + G  PD   FL++L AC ++G     + +F  M+  Y I P  +H+  V++ L RVG  
Sbjct: 532 HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 591

Query: 450 SQ---------------------------GYQN-SQNSFTKLLQLKPKHPSSYVLLSNIY 481
           SQ                           G Q  ++ +  KL  ++P   + YV+LSNIY
Sbjct: 592 SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A  G+W+D A V+ +M+ R ++K+ G+S++E+   ++ F +      +  EI  +L+ + 
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 711

Query: 540 AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
               +QGY P     LH +  E K E+L  HSE+LA+AF L+ T  GT I+I+K LT C 
Sbjct: 712 KEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACL 771

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCH+++K  SKI  R+I++RD+ RFH+FKDG CSC DYW
Sbjct: 772 DCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 23/318 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIHAQ++L  L +   +   LI   S    +D A S F + + K+   +  LI G  +N
Sbjct: 357 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 416

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M R  +RP+R T+  + K+ +SL+++ LGR LH  +++SG +   F  
Sbjct: 417 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 476

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMP 226
             L DMY + G    A + FDE PE+N     + WN +I+  +  G  + A+++F GM+ 
Sbjct: 477 SVLVDMYAKCGCLDEALRTFDEMPERNS----ISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAE 278
                +  +++S++      G   +  + F  M  +  +S     +  +I+   + G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +   M  +M     +A+     S L +C   G  E      + +    FG++    T  V
Sbjct: 593 QVQKMLVEM---PFKADPIIWTSILHSCRIHGNQELARVAADKL----FGMEPTDATPYV 645

Query: 339 ---DMYAKCGNIEAASLV 353
              ++YA+ G  E A+ V
Sbjct: 646 ILSNIYARAGQWEDAACV 663



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 147/349 (42%), Gaps = 47/349 (13%)

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G+L +A  +F  MP KN+ S   ++  +   GDL  A  LF   P +   +WT M+   +
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALS--ACAKVG----ALEAGVRVHNYISCND 326
             G    AL++F  ML  GV  +  TV + L+   C        A++ G+  H ++ CN 
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFV-CN- 174

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                     L+D Y K G + AA  VF E  +KD +T+ AM+ G +  G + QA+Q F 
Sbjct: 175 ---------TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFA 225

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
            M  +G       F +ILT    +G   L L         + +   V   T V+N+   V
Sbjct: 226 AMRRAGIPATHFTFSSILTVA--AGMAHLLLG--------HQVHALVLRSTSVLNVF--V 273

Query: 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA----RVRTLMQRRSI 502
                 + +  +    + +L  + P    +  N+  A   W   A    R+   MQ+   
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 503 KKD--PGWSYIEVNGHVHRFEAGGHKLAKEIHSKL-------EDIMAGA 542
            +   P  + + V G +     G     K+IH++L       ED++  A
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIG-----KQIHAQLVLLGLASEDLLGNA 377



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 104/449 (23%), Positives = 182/449 (40%), Gaps = 56/449 (12%)

Query: 10  TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           T A+     ++ +  P+ + T + I+++           Q+HA ++      +  +   L
Sbjct: 218 TQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSL 277

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129
           +   S    +D    +FD    ++   +NV+I   A N    + +  F  M +L      
Sbjct: 278 LDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQV 337

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           L Y  +     SL  + +G+ +H  +V  G+  +  +   L DMY + G    A   F  
Sbjct: 338 LPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSN 397

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP----------------- 226
             EK    S + W  LI G  + G   +A++LF      G+ P                 
Sbjct: 398 RSEK----SAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAM 453

Query: 227 ----------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                           K +V S   L+D + + G L +A   F++MPE+  +SW A+I+ 
Sbjct: 454 IGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISA 513

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV-----HNYISCN 325
           ++  GEA+ A+ MF  ML  G   +  T +S L+AC+  G  +  ++      H Y S +
Sbjct: 514 YAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQY-SIS 572

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQY 384
            +    A    ++D   + G       +  E   K D + WT+++    IHG  E A   
Sbjct: 573 PWKEHYA---CVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVA 629

Query: 385 FKKMMYSGTEP-DGTVFLAILTACWYSGQ 412
             K+   G EP D T ++ +      +GQ
Sbjct: 630 ADKLF--GMEPTDATPYVILSNIYARAGQ 656


>gi|226493697|ref|NP_001147320.1| selenium-binding protein-like [Zea mays]
 gi|195609890|gb|ACG26775.1| selenium-binding protein-like [Zea mays]
          Length = 605

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 207/626 (33%), Positives = 313/626 (50%), Gaps = 77/626 (12%)

Query: 47  LRQIHAQIILHNLFASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           LRQ H+Q+I   + + +    +L+S  +        YA  +  H    +  +FN L   L
Sbjct: 21  LRQHHSQLIRLGVASHAAHARRLLSFLARDPDSHFPYASRLLAHHPDPHPALFNPLFSAL 80

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
                 +        ML L +RP+  T+P +  S   L L++    LH L++K G     
Sbjct: 81  PT----RHAARLLALMLSLPLRPDHFTFPQILPSAQPLHLVAQ---LHALLLKLGFH--- 130

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
                    + Q      A  + +  P+       L   V   G   +            
Sbjct: 131 --------AHTQSLNALLAAYLANARPD-------LASRVFRGGGGAL------------ 163

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
               +V SW +++ G ++ G    A  LF+ MPE+ +VSW AM++G+ +      AL +F
Sbjct: 164 ----DVVSWTTMVGGLLKLGLFDDARVLFDGMPERNLVSWNAMMSGYVKACRFLDALEVF 219

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M   GV  N F   +A+ AC   GAL  G  VH ++  +   +   + TA+VDMY KC
Sbjct: 220 DEMRARGVDGNVFVAATAVVACTGAGALARGREVHRWVEQSGIQMDEKLATAVVDMYCKC 279

Query: 345 GNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           G +E A  VF       K L TW  MI G A+HGR + A++ F +M   G  PD    + 
Sbjct: 280 GCVEEAWRVFEALPLAAKGLTTWNCMIGGFAVHGRGQDALKLFGRMEREGVAPDDVTLVN 339

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT- 461
           +LTAC ++G +    ++F+ +   Y IEP ++H+  +V+L  R G+  +  +  Q+    
Sbjct: 340 VLTACAHAGMLSEGRHYFNYVPQRYGIEPKMEHYGCMVDLYGRAGRLEEAKKVIQDMPME 399

Query: 462 ---------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                      ++++L P++   YVLL+N+ A  GRW+DVARVR
Sbjct: 400 PDVGVLGALFGASKIHGDVDLGEAIGWRVIELDPQNSGRYVLLANLLATAGRWEDVARVR 459

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            LM  R++ K+ G S IEV G V  F+ GG  H  A+E+++   D+M   R +GY+P T 
Sbjct: 460 RLMDERNVSKEAGRSVIEVQGEVCEFQCGGLCHPRAEEVYAMASDMMRKIRAEGYVPDTR 519

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH I +EEKE  L  HSEKLA+AFGL+ T PG T++I K L +C DCH   K+ S++ 
Sbjct: 520 DVLHAIAEEEKETPLLYHSEKLAIAFGLLHTRPGDTMRITKNLRVCRDCHEATKFVSRVF 579

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +R+IV+RD  RFH+FKDG CSC+DYW
Sbjct: 580 ERQIVVRDRNRFHHFKDGQCSCKDYW 605


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  320 bits (820), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 184/483 (38%), Positives = 271/483 (56%), Gaps = 36/483 (7%)

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247
           D  P K  S S++L +  I+G +++G      ++  M  + ++     L+D + + G ++
Sbjct: 25  DVLPSKT-SFSLILRSCAISGEAQLGEAFHC-QIMKMGFEYDMILQTGLLDFYAKHGYVE 82

Query: 248 KAGELFEQMPEKGV--VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           +A  LF+ M E+    V+W  MI+ + Q GE   A++MF QM    V+  + T+VS LSA
Sbjct: 83  EARNLFDNMTERNSNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTEVTMVSLLSA 142

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA +GAL+ G  +H YI      +   +G AL+DMY KCG +EAA  VF     K++  W
Sbjct: 143 CAHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCW 202

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            ++I GL ++GR E+AI  F  M   G +PDG  F+ IL+ C +SG +     +F  M  
Sbjct: 203 NSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLG 262

Query: 426 DYFIEPSVKHHTVVVNLLSRVG----------------------------QDSQGYQNSQ 457
            Y +EP V+H+  +V+LL R G                            Q  +  +  +
Sbjct: 263 VYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGE 322

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
               +LL+L P    +YV LSN+YA+  RW DV   R LM +R + K PG S IEVN  V
Sbjct: 323 QVTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIV 382

Query: 518 HRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
           H F AG   H    +I++ L++I    + QG++P T  VLH+I+EE KE A+  HSE++A
Sbjct: 383 HEFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIA 442

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           +AFGL+ T PG TI++VK L  C DCHS MK  S   +REI++RD  RFH+F++G+CSC 
Sbjct: 443 VAFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCN 502

Query: 634 DYW 636
           DYW
Sbjct: 503 DYW 505



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 114/267 (42%), Gaps = 18/267 (6%)

Query: 51  HAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH--IFNVLIRGLAENS 108
           H QI+         + T L+   + H  ++ A ++FD+ T +N +   +N +I    +  
Sbjct: 53  HCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNTMISAYVQCG 112

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            F + IS F  M   +V+P  +T   +  + A L  L +G  +H  I    ++ D  +  
Sbjct: 113 EFGTAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGN 172

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L DMY + G    A  VF     KN    +  WN +I G    G   +A+  F +M K+
Sbjct: 173 ALIDMYCKCGALEAAIDVFHGLSRKN----IFCWNSIIVGLGMNGRGEEAIAAFIVMEKE 228

Query: 229 NV----ASWVSLIDGFMRKGDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEK 279
            +     ++V ++ G    G L      F +M      E GV  +  M++   + G  ++
Sbjct: 229 GIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLGRAGYLKE 288

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSAC 306
           AL +   M    ++ N   + S L AC
Sbjct: 289 ALELIRAM---PMKPNSMVLGSLLRAC 312



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 37/249 (14%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           TAI+    ++S +     +T   ++S      +      IH  I    L     +   LI
Sbjct: 116 TAISMFQQMQSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTKRLKIDVVLGNALI 175

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
                  +++ A+ +F   + KN+  +N +I GL  N   +  I+ F+ M +  ++P+ +
Sbjct: 176 DMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGV 235

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+  +    +   LLS G                  + + ++M            V+   
Sbjct: 236 TFVGILSGCSHSGLLSAG------------------QRYFSEM----------LGVYGLE 267

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
           P       V  +  +++   + GYL++A+EL   MP K  +    ++   +R   + K  
Sbjct: 268 P------GVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNS---MVLGSLLRACQIHKDT 318

Query: 251 ELFEQMPEK 259
           +L EQ+ ++
Sbjct: 319 KLGEQVTQQ 327


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/602 (31%), Positives = 303/602 (50%), Gaps = 106/602 (17%)

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF------------ 184
           +S  S + LSLG+ LH LI+ SG   D F+  HL ++Y + G+   A             
Sbjct: 60  QSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNIM 119

Query: 185 -------------------KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
                              K+FDE PE+N    V  WN ++ G  +  +  + + LF   
Sbjct: 120 SCNILINGYFRSGDWVTARKMFDEMPERN----VATWNAMVAGLIQFEFNEEGLGLFSRM 175

Query: 223 ---GMMPKK---------------------------------NVASWVSLIDGFMRKGDL 246
              G +P +                                 N+    SL   +M+ G L
Sbjct: 176 NELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGSL 235

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            +   L   MP + VV+W  +I G +QNG  E+ L  +  M  AG R +  T VS +S+C
Sbjct: 236 GEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSC 295

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           +++  L  G ++H  +      L  ++ ++L+ MY++CG +E +  VF E +  D++ W+
Sbjct: 296 SELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWS 355

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           +MI     HGR  +AI  F +M     E +   FL++L AC + G  +  + FFD M   
Sbjct: 356 SMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEK 415

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQN 458
           Y ++P ++H+T +V+LL R G   +                              + ++ 
Sbjct: 416 YGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMARR 475

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
              ++ +L P+ P  YVLLSNI+A++ RW DV+ VR  M+ R +KK+PG S++EV   +H
Sbjct: 476 ISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIH 535

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLAL 575
           +F  G   H  + EI S L ++ +  +++GY+P  + VLH++  E+KE +L  HSEKLA+
Sbjct: 536 QFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAI 595

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AF L+ T  GT I+++K L +C DCH  +KY S+IS REI++RD +RFH+FK+G CSC D
Sbjct: 596 AFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGD 655

Query: 635 YW 636
           YW
Sbjct: 656 YW 657



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 106/224 (47%), Gaps = 16/224 (7%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N+  +N LI G A+N + +  +  +  M     RP+++T+  V  S + L+ L  G+ +
Sbjct: 248 QNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISSCSELATLGQGQQI 307

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  ++K+G      V   L  MY + G    + KVF E    +    V+ W+ +I     
Sbjct: 308 HAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGD----VVCWSSMIAAYGF 363

Query: 212 IGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS---- 263
            G   +A++LF  M ++    N  +++SL+      G  +K  + F+ M EK  V     
Sbjct: 364 HGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLE 423

Query: 264 -WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            +T M++   + G  E+A A+   M    V+A+  T  + LSAC
Sbjct: 424 HYTCMVDLLGRYGSVEEAEALIRSM---PVKADVITWKTLLSAC 464



 Score = 44.3 bits (103), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 53/136 (38%), Gaps = 31/136 (22%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG------- 355
           L +C    +L  G ++H+ I  +       I   L+++Y+KCG ++ A  +FG       
Sbjct: 59  LQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMPRKNI 118

Query: 356 ------------------------ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
                                   E  E+++ TW AM+ GL      E+ +  F +M   
Sbjct: 119 MSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSRMNEL 178

Query: 392 GTEPDGTVFLAILTAC 407
           G  PD     ++L  C
Sbjct: 179 GFLPDEFALGSVLRGC 194


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 215/687 (31%), Positives = 331/687 (48%), Gaps = 100/687 (14%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           QIH  II  +      +   L+   +    +D A  +FD  + +N+  +  +I G A   
Sbjct: 154 QIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARRE 213

Query: 109 HFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             +  +  F  M+R   V PN +T   V  + A L  L  G  ++  I  SG+E +  + 
Sbjct: 214 FAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMI 273

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLLWNVL------ 205
             L DMY++      A ++FDE    N                  E++ + N++      
Sbjct: 274 SALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIR 333

Query: 206 ---------INGCSKI----------GY-LRKAVE------------------------L 221
                    I+ CS++          GY LR   E                        +
Sbjct: 334 PDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRI 393

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           F  M  K V +W S++ G++  G++  A E F  MPEK +VSW  +I+   Q    E+A+
Sbjct: 394 FDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAI 453

Query: 282 AMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
            +F  M     V  +  T++S  SAC  +GAL+    ++ YI  N   L   +GT LVDM
Sbjct: 454 EVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDM 513

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           +++CG+ E+A  +F     +D+  WTA I  +A+ G  E+AI+ F +M+  G +PDG VF
Sbjct: 514 FSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVF 573

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460
           +  LTAC + G V+     F+SM   + + P   H+  +V+LL R G   +  Q  ++  
Sbjct: 574 IGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMP 633

Query: 461 T----------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
           T                            K+  L P+   SYVLLSN+YA+ GRW D+A+
Sbjct: 634 TEPNDVIWNSLLAACRVQGNVEMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAK 693

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           VR  M+ + ++K PG S I++ G  H F +G   H   ++I + L+++   A + G++P 
Sbjct: 694 VRLSMKEKGLRKPPGTSVIQIRGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPD 753

Query: 551 TEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
              VL ++ E EK   L  HSEKLA+AFGLI +  GTTI+IVK L +C  CHS  K+ASK
Sbjct: 754 LSNVLMDVDEQEKIFMLSRHSEKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASK 813

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDY 635
           +  REI+LRD  RFH+ + G CSC D+
Sbjct: 814 VYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 223/532 (41%), Gaps = 95/532 (17%)

Query: 14  APTTNIKSSHKPS--NNITETHII-SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           +P     S+ KPS  N    T    S + +  +  +L+  H  +    L       T+L+
Sbjct: 11  SPMVLAISTSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAITKLV 70

Query: 71  SSAS---LHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           + +      +S+ +A  +F++        ++N LIRG A +   +  I  F+ M+   + 
Sbjct: 71  ARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGIS 130

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P++ T+PF     A       G  +H LI+K     D FV+  L   Y + G+   A KV
Sbjct: 131 PDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKV 190

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-----NVASWV------- 234
           FDE  E+N    V+ W  +I G ++  + + AV+LF  M +      N  + V       
Sbjct: 191 FDEMSERN----VVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACA 246

Query: 235 ----------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                       +L+D +M+   +  A  LF++     +    A
Sbjct: 247 KLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNA 306

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           M + + + G  ++AL +   M+D+G+R +  +++SA+S+C+++  +  G   H Y+  N 
Sbjct: 307 MASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNG 366

Query: 327 FGLKGAIGTALVDMYAKC-------------------------------GNIEAASLVFG 355
           F     I  AL+DMY KC                               G ++AA   F 
Sbjct: 367 FESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFN 426

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVK 414
              EK++++W  +I  L     YE+AI+ F  M        DG   ++I +AC + G + 
Sbjct: 427 TMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALD 486

Query: 415 LALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
           LA   +      Y+IE +     V+  T +V++ SR G D +   +  NS T
Sbjct: 487 LAKWIY------YYIEKNRIQLDVRLGTTLVDMFSRCG-DPESAMSIFNSLT 531



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 156/340 (45%), Gaps = 50/340 (14%)

Query: 116 HFVFMLRLSVRPNRLTYPFVSK-------SVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
           HF  M+ L++  ++ + P  SK       S+ +   +   +  H  + K G++ D     
Sbjct: 9   HFSPMV-LAISTSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGLDDDVSAIT 67

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKS-ESVLLWNVLINGCSKIGYLRKAVELF----- 222
            L     +LG TR +     E  E  +S  +  ++N LI G +  G  ++A+ LF     
Sbjct: 68  KLVARSCELG-TRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMN 126

Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
            G+ P K                                 ++    SL+  +   G+L  
Sbjct: 127 SGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDC 186

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACA 307
           A ++F++M E+ VVSWT+MI G+++   A+ A+ +FF+M+ D  V  N  T+V  +SACA
Sbjct: 187 ARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACA 246

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           K+  LE G +V+++I  +   +   + +ALVDMY KC  I+ A  +F E    +L    A
Sbjct: 247 KLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNA 306

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           M       G  ++A+     MM SG  PD    L+ +++C
Sbjct: 307 MASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSC 346



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/266 (24%), Positives = 126/266 (47%), Gaps = 18/266 (6%)

Query: 246 LKKAGELFEQMPEKGVV-SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           L  A E+FE     G    + ++I G++ +G  ++A+ +F +M+++G+  + +T    LS
Sbjct: 82  LSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLS 141

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
            CAK      G+++H  I   D+     +  +LV  YA+CG ++ A  VF E  E+++++
Sbjct: 142 VCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVS 201

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           WT+MI G A     + A+  F +M+      P+    + +++AC     ++     +D +
Sbjct: 202 WTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFI 261

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI--- 480
           R D  IE +    + +V++  +            N+     +L  ++ +S + L N    
Sbjct: 262 R-DSGIEVNDLMISALVDMYMKC-----------NAIDIAKRLFDEYGASNLDLCNAMAS 309

Query: 481 -YAAEGRWKDVARVRTLMQRRSIKKD 505
            Y  +G  K+   V  LM    I+ D
Sbjct: 310 NYVRQGLTKEALGVLNLMMDSGIRPD 335


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 194/639 (30%), Positives = 321/639 (50%), Gaps = 67/639 (10%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   L+ +   H  +  A  +F     K+   +N ++ G ++       +  F  M R  
Sbjct: 172 VCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAG 231

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +     T+  +    A ++ L LG  +H L+++S    + FV   L D Y +        
Sbjct: 232 IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMR 291

Query: 185 KVFDETPEK-NKSESVLLWNVLINGCS-----------KIGYLRKAV------ELFGMMP 226
           ++FDE PE+ N S +V++     N C+           K+G+ R+ +       + G +P
Sbjct: 292 RLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLP 351

Query: 227 KKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
             ++   +                 +LID + + G L  A   F    EK  +SWTA+I 
Sbjct: 352 DVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALIT 411

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+ QNG+ E+AL +F  M  AG+R +  T  S + A + +  +  G ++H+Y+  + +  
Sbjct: 412 GYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKS 471

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
               G+ LVDMYAKCG ++ A   F E  E++ ++W A+I   A +G  + AI+ F+ M+
Sbjct: 472 SVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGML 531

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
           + G  PD   FL++L AC ++G     + +F  M+  Y I P  +H+  V++ L RVG  
Sbjct: 532 HCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCF 591

Query: 450 SQ---------------------------GYQN-SQNSFTKLLQLKPKHPSSYVLLSNIY 481
           SQ                           G Q  ++ +  KL  ++P   + YV+LSNIY
Sbjct: 592 SQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIY 651

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A  G+W+D A V+ +M+ R ++K+ G+S++E+   ++ F +      +  EI  +L+ + 
Sbjct: 652 ARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLY 711

Query: 540 AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
               +QGY P     LH +  E K E+L  HSE+LA+AF L+ T  GT I+I+K LT C 
Sbjct: 712 KEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACL 771

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCH+++K  SKI  R+I++RD+ RFH+FKDG CSC DYW
Sbjct: 772 DCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 147/318 (46%), Gaps = 23/318 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIHAQ++L  L +   +   LI   S    +D A S F + + K+   +  LI G  +N
Sbjct: 357 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 416

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M R  +RP+R T+  + K+ +SL+++ LGR LH  +++SG +   F  
Sbjct: 417 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 476

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMP 226
             L DMY + G    A + FDE PE+N     + WN +I+  +  G  + A+++F GM+ 
Sbjct: 477 SVLVDMYAKCGCLDEALRTFDEMPERNS----ISWNAVISAYAHYGEAKNAIKMFEGMLH 532

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAE 278
                +  +++S++      G   +  + F  M  +  +S     +  +I+   + G   
Sbjct: 533 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 592

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +   M  +M     +A+     S L +C   G  E      + +    FG++    T  V
Sbjct: 593 QVQKMLVEM---PFKADPIIWTSILHSCRIHGNQELARVAADKL----FGMEPTDATPYV 645

Query: 339 ---DMYAKCGNIEAASLV 353
              ++YA+ G  E A+ V
Sbjct: 646 ILSNIYARAGQWEDAACV 663



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 167/410 (40%), Gaps = 56/410 (13%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA ++      +  +   L+   S    +D    +FD    ++   +NV+I   A N 
Sbjct: 257 QVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQ 316

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
              + +  F  M +L      L Y  +     SL  + +G+ +H  +V  G+  +  +  
Sbjct: 317 CAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGN 376

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
            L DMY + G    A   F    EK    S + W  LI G  + G   +A++LF      
Sbjct: 377 ALIDMYSKCGMLDAAKSNFSNRSEK----SAISWTALITGYVQNGQHEEALQLFSDMRRA 432

Query: 223 GMMP---------------------------------KKNVASWVSLIDGFMRKGDLKKA 249
           G+ P                                 K +V S   L+D + + G L +A
Sbjct: 433 GLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEA 492

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
              F++MPE+  +SW A+I+ ++  GEA+ A+ MF  ML  G   +  T +S L+AC+  
Sbjct: 493 LRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHN 552

Query: 310 GALEAGVRV-----HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLL 363
           G  +  ++      H Y S + +    A    ++D   + G       +  E   K D +
Sbjct: 553 GLADECMKYFHLMKHQY-SISPWKEHYA---CVIDTLGRVGCFSQVQKMLVEMPFKADPI 608

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQ 412
            WT+++    IHG  E A     K+   G EP D T ++ +      +GQ
Sbjct: 609 IWTSILHSCRIHGNQELARVAADKLF--GMEPTDATPYVILSNIYARAGQ 656



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 17/199 (8%)

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G+L +A  +F  MP KN+ S   ++  +   GDL  A  LF   P +   +WT M+   +
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALS--ACAKVG----ALEAGVRVHNYISCND 326
             G    AL++F  ML  GV  +  TV + L+   C        A++ G+  H ++ CN 
Sbjct: 117 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFV-CN- 174

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                     L+D Y K G + AA  VF E  +KD +T+ AM+ G +  G + QA+Q F 
Sbjct: 175 ---------TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFA 225

Query: 387 KMMYSGTEPDGTVFLAILT 405
            M  +G       F +ILT
Sbjct: 226 AMRRAGIPATHFTFSSILT 244


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 213/645 (33%), Positives = 312/645 (48%), Gaps = 107/645 (16%)

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR---LTYPFVSKSVASLSL 144
           HF P     +   IR  A    F   IS F+ M R SV P      + P   KS A L L
Sbjct: 10  HFPPS----WAYQIRMAASQGQFLHAISLFLQM-RASVAPRSSVPASLPAALKSCAGLGL 64

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL----------------GKTRGAF---- 184
            +L   LH L ++SG   D F    L ++ ++L                G    A+    
Sbjct: 65  CTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMR 124

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV---- 234
           KVFDE  E++     + WN LI GC++    ++A+ +       G MP     S V    
Sbjct: 125 KVFDEMLERD----AVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIF 180

Query: 235 -----------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                        SLID +     +  + ++F+   +   V W 
Sbjct: 181 AECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWN 240

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           +M+ G++QNG  E+AL +F +ML AGVR    T  S + A   +  L  G ++H Y+   
Sbjct: 241 SMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRA 300

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     I ++L+DMY KCGN++ A  VF   +  D+++WTAMI G A+HG   +A   F
Sbjct: 301 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLF 360

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           ++M     +P+   FLA+LTAC ++G V     +F+SM   Y   PS++H   + + L R
Sbjct: 361 ERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGR 420

Query: 446 VGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVLL 477
            G   + Y                              ++    K+ +L+PK   S+V+L
Sbjct: 421 AGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVIL 480

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLED 537
           SN+Y+A GRW + A++R  M+ + +KK+P  S+IEV   +H F A  H  +   + ++ D
Sbjct: 481 SNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIA--HDKSHPWYDRIID 538

Query: 538 IMAGAREQ----GYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
            +    EQ    GY+P  E VL +I+EE K E L  HSEKLA+ FG+I T PGTTI+++K
Sbjct: 539 ALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMK 598

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            L +C DCH   K+ SKI  REIV+RD  RFH FKDG CSC D+W
Sbjct: 599 NLRVCVDCHIATKFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 188/642 (29%), Positives = 322/642 (50%), Gaps = 100/642 (15%)

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           TP +L  +  +I+  A +   +  ++ F  +    + P+R  +P + ++       +L +
Sbjct: 38  TPHSL-AWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQ 96

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLG----------------------KTRGAFKVF 187
            LH  +++ G  +D +    L +MY +                        K     K+F
Sbjct: 97  SLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLF 156

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRK 243
           D  P ++    V+ WN +I G ++ G   +A+ +   M K+N+     +  S++  F   
Sbjct: 157 DRMPVRD----VVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEH 212

Query: 244 GDLKKAGEL-----------------------------------FEQMPEKGVVSWTAMI 268
            ++ K  E+                                   F  +  +  +SW ++I
Sbjct: 213 ANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSII 272

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G  QNG  ++ L  F +ML   V+    +  S + ACA + AL  G ++H YI    F 
Sbjct: 273 AGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFD 332

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFG--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
               I ++L+DMYAKCGNI+ A  +F   E  ++D+++WTA+I G A+HG    A+  F+
Sbjct: 333 DNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFE 392

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M+  G +P    F+A+LTAC ++G V     +F+SM+ D+ + P ++H+  V +LL R 
Sbjct: 393 EMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRA 452

Query: 447 GQDSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLS 478
           G+  + Y                            + ++    K+L + P +  ++V++S
Sbjct: 453 GRLEEAYDFISNMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMS 512

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIY+A  RW+D A++R  M++  +KK P  S+IEV   VH F AG   H    +I+  L 
Sbjct: 513 NIYSAAQRWRDAAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALN 572

Query: 537 DIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
            ++    ++GY+  T  VLH++ EE K + L  HSE+LA+AFG+I TT GTTI+++K + 
Sbjct: 573 ILLEQMEKEGYVLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIR 632

Query: 596 ICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +C DCH+ +K+ +KI  REI++RD +RFH+FK+G+CSC DYW
Sbjct: 633 VCVDCHTAIKFMAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 142/322 (44%), Gaps = 15/322 (4%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K + +P ++ T + I+ +     +  + ++IH   I H       I + LI   +    +
Sbjct: 192 KENLRP-DSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQV 250

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + ++  F   + ++   +N +I G  +N  F   +  F  ML+  V+P ++++  V  + 
Sbjct: 251 ELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPAC 310

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L+ L+LG+ LH  I++ G + + F+   L DMY + G  + A  +F++    ++   +
Sbjct: 311 AHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDR--DM 368

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
           + W  +I GC+  G+   AV LF  M     K    ++++++      G + +  + F  
Sbjct: 369 VSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNS 428

Query: 256 MPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           M        G+  + A+ +   + G  E+A      M   G         + L+AC    
Sbjct: 429 MQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNM---GEEPTGSVWSTLLAACRAHK 485

Query: 311 ALEAGVRVHNYISCNDFGLKGA 332
            +E   +V N I   D G  GA
Sbjct: 486 NIELAEKVVNKILLVDPGNMGA 507


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 200/634 (31%), Positives = 322/634 (50%), Gaps = 85/634 (13%)

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           ++F+ +  K ++  +N +I  LA +      +  F  M +LS+ P R ++P   K+ +SL
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G+  H      G + D FV   L  MY   GK   A KVFDE P++N    ++ W
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRN----IVSW 145

Query: 203 NVLINGCSKIGYLRKAVELF----------------------------GMMPKKNVASWV 234
             +I G    G    AV LF                              +P K +   +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205

Query: 235 -----------------SLIDGFMRKGD--LKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                            +L+D + + G+  +  A ++F+Q+ +K  VS+ ++++ ++Q+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 276 EAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            + +A  +F +++ +  V  N  T+ + L A +  GAL  G  +H+ +          +G
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           T+++DMY KCG +E A   F   K K++ +WTAMI G  +HG   +A++ F  M+ SG  
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   F+++L AC ++G       +F++M+  + +EP ++H+  +V+LL R G   + Y 
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 455 NSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
             Q                             S  +L +L   +   Y+LLS+IYA  GR
Sbjct: 446 LIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGR 505

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGARE 544
           WKDV RVR +M+ R + K PG+S +E+NG VH F  G   H   ++I+  L ++     E
Sbjct: 506 WKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLE 565

Query: 545 QGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY+  T  V H++ +EEKE  L  HSEKLA+AFG++ T PG+T+ +VK L +C DCH++
Sbjct: 566 AGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNV 625

Query: 604 MKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K  SKI  RE V+RD  RFH+FKDG CSC DYW
Sbjct: 626 IKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 168/388 (43%), Gaps = 62/388 (15%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q H Q  +    +   +++ LI   S    ++ A  +FD    +N+  +  +IRG   N
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLN 155

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS---------LGRGLHCLIVKS 158
            +    +S F  +L   V  N         S+  +S++S         L   +H  ++K 
Sbjct: 156 GNALDAVSLFKDLL---VDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 159 GVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           G +    V   L D Y + G+     A K+FD+  +K++    + +N +++  ++ G   
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR----VSYNSIMSVYAQSGMSN 268

Query: 217 KAVELFGMMPKKNVASW----------------------------------------VSL 236
           +A E+F  + K  V ++                                         S+
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           ID + + G ++ A + F++M  K V SWTAMI G+  +G A KAL +F  M+D+GVR N 
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVF 354
            T VS L+AC+  G    G R  N +    FG++  +     +VD+  + G ++ A  + 
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMK-GRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 355 GETKEK-DLLTWTAMIWGLAIHGRYEQA 381
              K K D + W++++    IH   E A
Sbjct: 448 QRMKMKPDSIIWSSLLAACRIHKNVELA 475



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT + ++  +  S + +  + IH Q+I   L     + T +I        ++ A   F
Sbjct: 286 NAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAF 345

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KN+  +  +I G   + H    +  F  M+   VRPN +T+  V  + +   L  
Sbjct: 346 DRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHV 405

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G R  + +  + GVE       H   M   LG+     K +D           ++W+ L
Sbjct: 406 EGWRWFNAMKGRFGVEPGL---EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 206 INGCSKIGYLRKAVEL 221
           +  C     + K VEL
Sbjct: 463 LAACR----IHKNVEL 474


>gi|449451283|ref|XP_004143391.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
 gi|449519310|ref|XP_004166678.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570-like [Cucumis sativus]
          Length = 565

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 190/568 (33%), Positives = 302/568 (53%), Gaps = 72/568 (12%)

Query: 6   FNRL--TTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS 63
           F+R   TT+ A TTN      P +N++   I +L+    +   L Q+HA +I   L   S
Sbjct: 8   FSRFHTTTSFAKTTN------PKSNVSLYSISALLKLCKTHIDLHQVHAHLIQKGLEQDS 61

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
            + TQ IS+++    I Y+ S+FD     +  ++N L+ G      F   IS +V M R 
Sbjct: 62  FLVTQFISASNSVAHISYSTSVFDRVLSPSTFLWNSLVSGYCAKLQFVDIISLYVRMKRE 121

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
              P+R T+P + K  AS   +  G  LH  I++ GV+ D +V   L ++Y + G    A
Sbjct: 122 DGAPDRYTFPSLLKVCASEGKMMEGMALHGSILRCGVDEDIYVTTSLVNLYGKGGLIDCA 181

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
            KVFD   E+N    V+ W  +I G S IG L +A  LF +MP++NVASW ++I G+M+ 
Sbjct: 182 RKVFDGMSERN----VVSWTAMIVGYSSIGNLVEAKRLFDLMPERNVASWNAIIGGYMKM 237

Query: 244 GDLKKAGELFEQMPEKGVVS-------------------------------WTAMINGFS 272
           GD+K A + F++MPEK VVS                               W+A+I+G++
Sbjct: 238 GDVKSAEKAFDEMPEKNVVSFTTMIDGYAKAGDMLSARNLFQKAPERDIIAWSALISGYT 297

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG+  +A+  F +M    V+ + F + S + AC+++G L+    V +Y +     L+GA
Sbjct: 298 QNGQPNEAVKTFLEMSSRNVKPDKFVLTSLMLACSQLGNLDLAKWVDSYATRCSVDLRGA 357

Query: 333 -IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +  AL+DM AKCGN+E A  +F +  ++DL+++ +++ GL+IHG  +QA+  F++M+  
Sbjct: 358 HVTAALIDMNAKCGNMERAMYLFEKMPKRDLISYCSVMQGLSIHGHGDQAVSLFERMLGE 417

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
              PD   F  ILTAC  +G V    ++F+ MR  Y + PSV H+  +V+LLSR G+  +
Sbjct: 418 DLTPDDVAFTVILTACSRAGLVDEGWHYFEMMRCKYSMVPSVDHYACIVDLLSRSGRLKE 477

Query: 452 GY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
            Y                            + ++   ++L++++P++  +YVLLSNIYAA
Sbjct: 478 AYELIKSVPVQSHAGAWGALLGACKLYCDSELAEVVASRLIEIEPENAGNYVLLSNIYAA 537

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYI 511
             RW DV+ VR  M  R ++K PG S+I
Sbjct: 538 ADRWLDVSAVRNQMNERGLRKIPGCSWI 565


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  319 bits (818), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 163/434 (37%), Positives = 261/434 (60%), Gaps = 32/434 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LID + ++G L  A  +F +M +K VVSWT+++ G+S NG  E+A+ +F +M  +GV  
Sbjct: 81  ALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYP 140

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +   V S LSACA++  ++ G ++H  +  +      ++  +LV MYAKCG+I  A+  F
Sbjct: 141 DQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAF 200

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                +D+++WTA+I G A +GR + ++Q++ +M+ +GT+PD   F+ +L AC ++G + 
Sbjct: 201 DNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLG 260

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGYQNS---------------- 456
               +F++M   Y I+P  +H+  +++LL R G+  +++G  N                 
Sbjct: 261 SGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA 320

Query: 457 ----------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                     + +   L +L+P +   YV+LSN+Y+A G+W+D AR+R LM+ R I K+P
Sbjct: 321 CRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEP 380

Query: 507 GWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G+S+IE N  V  F  E   H L  EI+SK+++I+   +E GY+P   + LH+  +E KE
Sbjct: 381 GYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKE 440

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-F 622
             L  HSEKLA+AFGL+    G  I+I K L +CGDCH+ MKY SK+  R I+LRD+  F
Sbjct: 441 LGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCF 500

Query: 623 HYFKDGTCSCRDYW 636
           H+F +G CSC DYW
Sbjct: 501 HHFTEGRCSCGDYW 514



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 140/327 (42%), Gaps = 51/327 (15%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N LI G       +  +S F  M    ++ +  T P V  S AS+ ++     +HCLI+
Sbjct: 9   WNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCLII 68

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K+G E    V   L DMY + GK   A  VF +  +K+    V+ W  L+ G S  G   
Sbjct: 69  KTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKD----VVSWTSLVTGYSHNGSYE 124

Query: 217 KAVELF------GMMPKKNVASWV---------------------------------SLI 237
           +A++LF      G+ P +   + V                                 SL+
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLV 184

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
             + + G +  A   F+ MP + V+SWTA+I G++QNG  + +L  + QM+  G + +  
Sbjct: 185 TMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYI 244

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCND--FGLKGAIG--TALVDMYAKCGNI-EAASL 352
           T +  L AC+  G L +G     Y    D  +G+K        ++D+  + G + EA  L
Sbjct: 245 TFIGLLFACSHNGLLGSG---RAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGL 301

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYE 379
           +       D + W A++    +H   E
Sbjct: 302 LNQMVVAPDAVVWKALLAACRVHKELE 328



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/146 (34%), Positives = 87/146 (59%)

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW ++I G  + G  E AL+ F +M    ++ +++T+ S L++ A +  ++  + VH  
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVHCL 66

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I    F     +  AL+DMYAK G ++ A +VF +  +KD+++WT+++ G + +G YE+A
Sbjct: 67  IIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEA 126

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           I+ F KM  SG  PD     ++L+AC
Sbjct: 127 IKLFCKMRISGVYPDQIAVASVLSAC 152



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 128/293 (43%), Gaps = 20/293 (6%)

Query: 29  ITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           I E  + S+++S  S K ++    +H  II     A   +   LI   +    +D A+ +
Sbjct: 39  IDEYTLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMV 98

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     K++  +  L+ G + N  ++  I  F  M    V P+++    V  + A L+++
Sbjct: 99  FSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVM 158

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +H  +VKSG+E    V   L  MY + G    A + FD  P ++    V+ W  L
Sbjct: 159 DFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRD----VISWTAL 214

Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---- 257
           I G ++ G  + +++ +  M     K +  +++ L+      G L      FE M     
Sbjct: 215 IVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFEAMDKVYG 274

Query: 258 -EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            + G   +  MI+   ++G+  +A  +  QM    V A D  V  AL A  +V
Sbjct: 275 IKPGPEHYACMIDLLGRSGKLAEAKGLLNQM----VVAPDAVVWKALLAACRV 323


>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 564

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 207/635 (32%), Positives = 315/635 (49%), Gaps = 115/635 (18%)

Query: 45  KQLRQIHAQIILHNL------FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
           + LRQ+HA I+   L      FA S+I      + S   +I+YA S+F      N+  +N
Sbjct: 2   RVLRQLHAHILTRPLPLSSFAFALSKIVA--FCALSPFGNINYARSVFAQIPHPNIFSWN 59

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLSVR-----PNRLTYPFVSKSVASLSLLSLGRGLHC 153
            LI+G    S   +     +F+ +         PN  T  FV K+ A ++    G  +H 
Sbjct: 60  SLIKGY---SQIHTLSKEPIFLFKKLTETGYPVPNSFTLAFVLKACAIVTAFGEGLQVHS 116

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            ++K G     FV+  L + Y   GK                             C +IG
Sbjct: 117 HVLKDGFGSSLFVQTSLVNFY---GK-----------------------------CEEIG 144

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
           + RK                                  +FE+MP + +V+WTAMI+G ++
Sbjct: 145 FARK----------------------------------VFEEMPVRNLVAWTAMISGHAR 170

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
            G  ++A+ +F +M  AG++ +  T+VS +SACA  GAL+ G  +H YI          +
Sbjct: 171 VGAVDEAMELFREMQKAGIQPDAMTLVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLEL 230

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
            TALVDMYAKCG IE A  VF     KD   W++MI G A HG  + AI  F++M+ +  
Sbjct: 231 STALVDMYAKCGCIERAKQVFVHMPVKDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEV 290

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453
            PD   FLA+L+AC + G V     F+ S+  ++ IEPSV+H+   V+LL R G   + Y
Sbjct: 291 TPDHVTFLAVLSACAHGGLVSRGRRFW-SLMLEFGIEPSVEHYGCKVDLLCRSGLVEEAY 349

Query: 454 QNS------QNSFT----------------------KLLQLKPKHPSSYVLLSNIYAAEG 485
           + +       N+ T                       LL+L+P +  +Y+++SN+Y++  
Sbjct: 350 RITTTMKIPPNAATWRSLLMGCKKKKLLNLGEIVARYLLELEPLNAENYIMISNLYSSLS 409

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAR 543
           +W+ ++ +R +M+ + IK  PG S IEV+G VH F  G   H   K +   +E++    R
Sbjct: 410 QWEKMSELRKVMKEKCIKPVPGCSSIEVDGVVHEFVMGDQSHPEVKMLREFMEEMSMRVR 469

Query: 544 EQGYMPGTEWVLHN-IKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
           + GY P    VLH  + EEKE AL  HSE+ A+A+GL++T     I++VK L +C DCH 
Sbjct: 470 DSGYRPSISDVLHKVVDEEKECALSEHSERFAIAYGLLKTRAPIVIRVVKNLRVCVDCHE 529

Query: 603 LMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++K  SK+ +REI++RD  RFH F  GTCSC+D+W
Sbjct: 530 VIKIISKLYEREIIVRDRVRFHKFIKGTCSCKDFW 564


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 205/683 (30%), Positives = 342/683 (50%), Gaps = 77/683 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           SN  T    +  +   +  K    IH  ++  N FA   +   LI+  +    ++ A  +
Sbjct: 246 SNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRV 305

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSL 144
           F+    ++   +N L+ GL +N  +   +++F  M     +P++++    ++ S  S +L
Sbjct: 306 FESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNL 365

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G+ +H   +++G++ +  +   L DMY +    +     F+   EK+    ++ W  
Sbjct: 366 LK-GKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKD----LISWTT 420

Query: 205 LINGCSKIGYLRKAVELF-----------------------------------GMMPKKN 229
           +I G ++  +  +A+ LF                                   G + K++
Sbjct: 421 IIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRD 480

Query: 230 VASWV---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           +A  +   ++++ +   G +  A   FE +  K +VSWT+MI     NG   +AL +F+ 
Sbjct: 481 LADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYS 540

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           +    ++ +   ++SALSA A + +L+ G  +H ++    F L+G I ++LVDMYA CG 
Sbjct: 541 LKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGT 600

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +E +  +F   K++DL+ WT+MI    +HG   +AI  FKKM      PD   FLA+L A
Sbjct: 601 VENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYA 660

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---- 462
           C +SG +     FF+ M++ Y +EP  +H+  +V+LLSR     + Y   +N   K    
Sbjct: 661 CSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSE 720

Query: 463 ------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                                   LLQ   ++   Y L+SNI+AA+GRW DV  VR  M+
Sbjct: 721 IWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMK 780

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQG-YMPGTEWVL 555
              +KK+PG S+IEV+  +H F A    H    +I+ KL        ++G Y+  T++V 
Sbjct: 781 GNGLKKNPGCSWIEVDNKIHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVF 840

Query: 556 HNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           HN+ +EEK + L  HSE+LAL +GL+ T  GT I+I K L IC DCH+  K AS++SQR 
Sbjct: 841 HNVSEEEKTQMLYGHSERLALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRP 900

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           +V+RD  RFH+F+ G CSC D+W
Sbjct: 901 LVVRDANRFHHFERGLCSCGDFW 923



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 139/310 (44%), Gaps = 47/310 (15%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G+ LH L++KS     AF+   L  MY + G  R A KVFDE  E+    ++  WN 
Sbjct: 62  LPQGQQLHALLLKS--HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSER----TIFSWNA 115

Query: 205 L-----------------------------------INGCSKIGYLRKAVELFGMMPKKN 229
           L                                   +  C  +G  R   E+ G+  K  
Sbjct: 116 LMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCG 175

Query: 230 VASWV----SLIDGFMRKGDLKKAGELFE--QMPEKGVVSWTAMINGFSQNGEAEKALAM 283
              +V    +LI  + + GDL  A  LF+   M ++  VSW ++I+     G   +AL++
Sbjct: 176 YGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSL 235

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F +M + GV +N +T V+AL        ++ G+ +H  +  ++      +  AL+ MYAK
Sbjct: 236 FRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAK 295

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           CG +E A  VF     +D ++W  ++ GL  +  Y  A+ YF+ M  SG +PD    L +
Sbjct: 296 CGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNL 355

Query: 404 LTACWYSGQV 413
           + A   SG +
Sbjct: 356 IAASGRSGNL 365



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 149/349 (42%), Gaps = 44/349 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N +I       +    +S F  M  + V  N  T+    + V   S + LG G+H  ++
Sbjct: 216 WNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVL 275

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           KS    D +V   L  MY + G+   A +VF    E       + WN L++G  +     
Sbjct: 276 KSNHFADVYVANALIAMYAKCGRMEDAGRVF----ESMLCRDYVSWNTLLSGLVQNELYS 331

Query: 217 KAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGEL-------------------- 252
            A+  F  M     K +  S ++LI    R G+L K  E+                    
Sbjct: 332 DALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLV 391

Query: 253 ---------------FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
                          FE M EK ++SWT +I G++QN    +A+ +F ++   G+  +  
Sbjct: 392 DMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPM 451

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
            + S L AC+ + +      +H Y+   D      +  A+V++Y + G+I+ A   F   
Sbjct: 452 MIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYARRAFESI 510

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           + KD+++WT+MI     +G   +A++ F  +  +  +PD    ++ L+A
Sbjct: 511 RSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSA 559



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 56/219 (25%), Positives = 110/219 (50%), Gaps = 4/219 (1%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKG 260
           ++L++ C     L +  +L  ++ K +++++++  L+  + + G L+ A ++F++M E+ 
Sbjct: 50  SLLLDLCVAAKALPQGQQLHALLLKSHLSAFLATKLVLMYGKCGSLRDAVKVFDEMSERT 109

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           + SW A++  F  +G+  +A+ ++  M   GV  +  T  S L AC  +G    G  +H 
Sbjct: 110 IFSWNALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEK-DLLTWTAMIWGLAIHGRY 378
                 +G    +  AL+ MY KCG++  A ++F G   EK D ++W ++I      G  
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            +A+  F++M   G   +   F+A L        VKL +
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM 268


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 196/628 (31%), Positives = 322/628 (51%), Gaps = 86/628 (13%)

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+  TP N +  N LI+ L +  + +  +    ++L     P + T   +  S A  + L
Sbjct: 31  FNPSTPPNSN-NNHLIQSLCKQGNLKQAL----YLLSHESNPTQQTCELLILSAARRNSL 85

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S    +H L+V  G + D F+   L +M+ +L     A KVFD+T    +  ++ +WN L
Sbjct: 86  SDALDVHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKT----RKRTIYVWNAL 141

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVAS--------------------------------- 232
               +  G     +EL+  M    V+S                                 
Sbjct: 142 FRALALAGRGNDVLELYPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHIL 201

Query: 233 ----------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       +L+D + R G +  A  +F++MP K VVSW+AMI  +++NG+  +AL 
Sbjct: 202 RHGYGAHVHVMTTLMDMYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALE 261

Query: 283 MFFQML--DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           +F +M+        N  T+VS L ACA   ALE G  +H YI          + +AL+ M
Sbjct: 262 LFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITM 321

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YA+CG +E+  L+F    +KD++ W ++I    +HG   +AI+ F++M+  G  P    F
Sbjct: 322 YARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISF 381

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------- 452
           +++L AC ++G V+     F+SM  ++ I+PSV+H+  +V+LL R  +  +         
Sbjct: 382 ISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLR 441

Query: 453 --------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                + ++ +  +L +L+P +  +YVLL++IYA    W +V R
Sbjct: 442 IEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKR 501

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPG 550
           V+ L+  R ++K PG S+IEV   ++ F +    +   +++H+ L ++    +++GY P 
Sbjct: 502 VKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQ 561

Query: 551 TEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
           T+ VL+++ +EEKE  +  HSEKLA+AFGLI T+ G TI+I K L +C DCHS+ K+ SK
Sbjct: 562 TKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISK 621

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            + REI++RD  RFH+FKDG CSC DYW
Sbjct: 622 FADREIMVRDLNRFHHFKDGVCSCGDYW 649


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 210/726 (28%), Positives = 346/726 (47%), Gaps = 129/726 (17%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH---- 95
           + N ++ ++ IH  II    +  + +   ++ + +L KS  YA  +FD     NL     
Sbjct: 18  ARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNN 77

Query: 96  ---------------------------IFNVLIRGLAENSHFQSCISHFVFMLR-LSVRP 127
                                       +NVLI G + +    + +  +  M+R  S   
Sbjct: 78  LLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANL 137

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
            R+T   + K  +S   +SLG+ +H  ++K G E    V   L  MY  +G    A KVF
Sbjct: 138 TRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVF 197

Query: 188 DETPEKNK--------------------------SESVLLWNVLINGCSKIGYLRKAVEL 221
               ++N                            +  + W  +I G ++ G  ++A+E 
Sbjct: 198 YGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIEC 257

Query: 222 FGMMP---------------------------------------KKNVASWVSLIDGFMR 242
           F  M                                        + ++    +LID + +
Sbjct: 258 FREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCK 317

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
              L  A  +F++M +K VVSWTAM+ G+ Q G AE+A+ +F  M  +G+  + +T+  A
Sbjct: 318 CKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQA 377

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           +SACA V +LE G + H     +       +  +LV +Y KCG+I+ ++ +F E   +D 
Sbjct: 378 ISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDA 437

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++WTAM+   A  GR  + IQ F KM+  G +PDG     +++AC  +G V+    +F  
Sbjct: 438 VSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKL 497

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGY-------QNSQN-- 458
           M  +Y I PS+ H++ +++L SR G+               D+ G+       +N  N  
Sbjct: 498 MTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLE 557

Query: 459 ----SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
               +   L++L P HP+ Y LLS+IYA++G+W  VA++R  M+ +++KK+PG S+I+  
Sbjct: 558 IGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWK 617

Query: 515 GHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSE 571
           G +H F A         +I++KLE++     + GY P T +V H+++E  K + L  HSE
Sbjct: 618 GKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSE 677

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           +LA+AFGLI    G  I++ K L +C DCH+  K+ S ++ REI++RD  RFH FKDGTC
Sbjct: 678 RLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTC 737

Query: 631 SCRDYW 636
           SC D+W
Sbjct: 738 SCGDFW 743


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 205/688 (29%), Positives = 336/688 (48%), Gaps = 97/688 (14%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T    + LIHSS ST+         +LH     +R+         LH     A ++FDH 
Sbjct: 36  TSLTTLKLIHSSLSTRGF-------LLHTPHFLARLIILYSKLGDLHS----ARTLFDHR 84

Query: 90  T--------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
                      N  + N ++R  A        I  +++M R+ V  N  TYPFV K  AS
Sbjct: 85  HHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCAS 144

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
                 G  +H  +V++G   D FV   L DMY + G+   A +VFD    ++    V+ 
Sbjct: 145 ELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRD----VVC 200

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKK----------NVASWV---------------SL 236
           W  +I    +     KA+ LF  M ++          +VAS V               ++
Sbjct: 201 WTAMITLYEQAERPLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAV 260

Query: 237 IDGFM--------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           ++GF+              + G++++A  +F++M E+  +SW +M++G++QNG    AL+
Sbjct: 261 LNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALS 320

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F QM  +    N  T +  +SAC+ +G+   G ++HN++  +   +   +  A++DMY 
Sbjct: 321 LFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYM 380

Query: 343 KCGNIEAASLVFG--ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           KCG+++ A  +F   E  E+D+ +W  +I G  +HG  ++A++ F +M   G EP+   F
Sbjct: 381 KCGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITF 440

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------- 453
            +IL+AC ++G +      F  M     + P +KH+  +V++L R G  ++ +       
Sbjct: 441 TSILSACSHAGLIDEGRKCFADMT-KLSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIP 499

Query: 454 ---------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                +  + +   L QL+P+H   YVL+SNIYAA  +WK+V  
Sbjct: 500 SRPSDEVWGALLLACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEM 559

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGAREQGYMPG 550
           VR  M+ R +KK   +S IE    VH F          +E++ K+E +    +  GY+P 
Sbjct: 560 VRQNMKSRGLKKPAAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPD 619

Query: 551 TEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
              VLH+++ E+KE  L  HSEKLA+AFG+++   G  I++ K L +C DCH   K+ S 
Sbjct: 620 LSCVLHDVEPEDKEHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISS 679

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I  R+I++RD  RFH+F+ G CSC DYW
Sbjct: 680 IYGRKIIVRDGNRFHHFQGGRCSCGDYW 707



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 79/380 (20%), Positives = 160/380 (42%), Gaps = 29/380 (7%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + IT   + S +      +    +H   +L+       +   ++   +   +++ A  +F
Sbjct: 232 DEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVF 291

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +N   +N ++ G  +N      +S F  M      PN +T   +  + + L    
Sbjct: 292 DRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKH 351

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD--ETPEKNKSESVLLWNV 204
           LGR LH  ++ S ++ D  +R  + DMY++ G    A ++F+  E  E++ S     WNV
Sbjct: 352 LGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSS----WNV 407

Query: 205 LINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           LI+G    G+ ++A+ELF  M     + N  ++ S++      G + +  + F  M +  
Sbjct: 408 LISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTKLS 467

Query: 261 VVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           V      +  M++   + G   +A  +  ++     R +D    + L AC   G  E G 
Sbjct: 468 VRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPS---RPSDEVWGALLLACRIHGNTELGE 524

Query: 317 RVHNYISCNDFGLK---GAIGTALVDMYAKCGNIEAASLVFGETKEKDL---LTWTAMIW 370
              N    N F L+         + ++YA     +   +V    K + L     ++ + +
Sbjct: 525 IAAN----NLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEF 580

Query: 371 GLAIHGRY--EQAIQYFKKM 388
           G  +HG +  +Q+  Y++++
Sbjct: 581 GTEVHGFHTADQSSPYYREV 600


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 211/669 (31%), Positives = 341/669 (50%), Gaps = 77/669 (11%)

Query: 42   NSTKQLRQIHAQIILHNLF-ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
            N  ++  ++HA +I   L  A   I   LI+  +   +I+ A  +F     K+   +N +
Sbjct: 402  NGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSM 461

Query: 101  IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
            I GL +N  F   +  F  M R  + P+  T      S ASL  +S+G  LHC  +K G+
Sbjct: 462  ITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGL 521

Query: 161  EYDAFVRVHLADMYVQLGKTRGAFKVF-------------------DETPEKNKS-ESVL 200
            + D  V   L  +Y + G  +   K F                   D  P   ++ ES L
Sbjct: 522  DLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFL 581

Query: 201  L-----WN-------VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKG 244
            +     W+        ++   S +       ++  ++ K+NVA+  ++ +  +    + G
Sbjct: 582  VMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCG 641

Query: 245  DLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
            D+     +F +M ++   VSW +MI+G+  N    KA+ M + M+  G R + FT  + L
Sbjct: 642  DMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVL 701

Query: 304  SACAKVGALEAGVRVH--NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            SACA V  LE G+ VH  +  +C +  +   IG+ALVDMYAKCG I+ AS  F     ++
Sbjct: 702  SACATVATLERGMEVHGCSVRACLESDI--VIGSALVDMYAKCGRIDYASRFFEMMPARN 759

Query: 362  LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
            L +W +MI G A HG   +++  F +M   G  PD   F+ +L+AC ++G V    + FD
Sbjct: 760  LYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFD 819

Query: 422  SMRFDYFIEPSVKHHTVVVNLLSRVGQ------------------------------DSQ 451
            SM   Y + P ++H + +V+LL RVG+                              + +
Sbjct: 820  SMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGR 879

Query: 452  GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                 + +   LL+++P +  +Y+LLSN+YA+ G+W DVA+ R  M++  +KK+ G S++
Sbjct: 880  NTALGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWV 939

Query: 512  EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGC 568
             +   VH F AG   H     I+ KL+++    R  GY+P T + L++++ E KEE L  
Sbjct: 940  TMKDGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSY 999

Query: 569  HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKD 627
            HSEK+A+AF L + +    I+I+K L +CGDCHS  KY S+I +R+IVLRD+ RFH+F++
Sbjct: 1000 HSEKIAVAFVLTRPSK-MPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFEN 1058

Query: 628  GTCSCRDYW 636
            G CSC D+W
Sbjct: 1059 GKCSCGDFW 1067



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 133/601 (22%), Positives = 234/601 (38%), Gaps = 94/601 (15%)

Query: 5   VFNRLTTAIAPTTN--------IKSSHKPSNNITETHIISLIHS----SNSTKQLRQIHA 52
           +FN  T  + P++          KSS    N +     I  +      S  +K   ++H 
Sbjct: 38  LFNPFTNPLPPSSIPLQVLVDLYKSSQLHHNPVQHDEKIESLAQRYRYSCGSKDAEELHL 97

Query: 53  QIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112
           Q+  +       +   LI+  +    +     +FD    +NL  ++ LI G   N     
Sbjct: 98  QLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNE 157

Query: 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSL--LSLGRGLHCLIVKSGVEYDAFVRVHL 170
               F  M+     PN   +  V ++        L  G  +H L+ K+    D      L
Sbjct: 158 ACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVL 217

Query: 171 ADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
             MY   LG    A + FD    +N    ++  N +I+   + G    A ++F  M K+ 
Sbjct: 218 ISMYGNALGMVDYARRAFDSIWPRN----LVSLNSMISVYCQRGDAVSAFDIFSTMQKEV 273

Query: 230 VASWV---------------------------------------------SLIDGFMRKG 244
           +   +                                             +L+ GF + G
Sbjct: 274 MGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAG 333

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            +  A  +F++M  + VVS   +I G  +    E+A+ +F +M D+ V  N  + +  L+
Sbjct: 334 SIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS-VELNPNSYMIILT 392

Query: 305 ACAKVGALEAGVR----VHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           A  +   LE G R    VH + I       + AIG  L++MYAKCG I  A +VF     
Sbjct: 393 AFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDN 452

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           KD +TW +MI GL  + ++ +A++ F++M  +   P     ++ L++C   G + +    
Sbjct: 453 KDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQL 512

Query: 420 F-DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-QNSQNSFTKLLQLKPKHPSSYVLL 477
             + ++    ++ SV +      LL+  G+   GY +  Q +F+  L L   H S   L+
Sbjct: 513 HCEGLKLGLDLDVSVSNA-----LLALYGE--CGYVKECQKAFS--LMLDYDHVSWNSLI 563

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGW-----SYIEVNGHVHRFEAGGHKLAKEIH 532
             +  +E    +      +M R       GW     ++I +   V       H+L K+IH
Sbjct: 564 GALADSEPSMLEAVESFLVMMR------AGWDPNRVTFITILAAVSSLSL--HELGKQIH 615

Query: 533 S 533
           +
Sbjct: 616 A 616



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 131/292 (44%), Gaps = 17/292 (5%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T   I++ + S +  +  +QIHA ++  N+ A + I   L++       + Y  +IF
Sbjct: 591 NRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCENIF 650

Query: 87  DHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
              + +   + +N +I G   N      +    FM++   R +  T+  V  + A+++ L
Sbjct: 651 SRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATL 710

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  +H   V++ +E D  +   L DMY + G+   A + F+  P +N    +  WN +
Sbjct: 711 ERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARN----LYSWNSM 766

Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--- 258
           I+G ++ G+  K+++LF  M    P  +  ++V ++      G + +    F+ M E   
Sbjct: 767 ISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYG 826

Query: 259 --KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
               +  ++ M++   + GE  K      QM    V+ N     + L AC +
Sbjct: 827 LAPRMEHFSCMVDLLGRVGELNKMEDFLNQM---PVKPNVLIWRTVLGACCR 875


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 212/681 (31%), Positives = 337/681 (49%), Gaps = 98/681 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H  ++     A   + T L++      S   A  +FD    KN+  +  LI G   N
Sbjct: 96  RALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLN 155

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
           S     +  FV ML L   P+  T   +  + ++   + LG+ +H   +K G +    + 
Sbjct: 156 SEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMG 215

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELF---- 222
             L  +Y + G      + F  TP+KN    V+ W  +I+ C++   YL   + LF    
Sbjct: 216 NSLCRLYCKSGDLESGLRAFKGTPDKN----VITWTTMISSCAEDENYLDLGLSLFLDML 271

Query: 223 --GMMPKK-NVASWVSLIDG--------------------------------FMRKGDLK 247
             G+MP +  + S +SL                                   ++RKG+  
Sbjct: 272 EGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETD 331

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-----------ALAMFFQMLDAGVRAND 296
           +A  LFE+M    +++W AMI+G++Q  ++ K           AL +F  ++ + ++ + 
Sbjct: 332 EAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDL 391

Query: 297 FTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           FT  S LS C+ + ALE G ++H N I          + +ALV+MY KCG+IE A+  F 
Sbjct: 392 FTFSSILSVCSAMMALEQGEQIHANTIKTGCLS-DVVVNSALVNMYNKCGSIECATKAFV 450

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E   +  +TWT+MI G + HGR + AIQ F+ M+ SG  P+   F+++L+AC Y+G V+ 
Sbjct: 451 EMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEE 510

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------------- 454
           A  +FD MR +Y IEP V H+  +V++  R+G+    +                      
Sbjct: 511 AERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGC 570

Query: 455 ----NSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK--KD 505
               N + +F    +LL+LKPK   +YVLL N+Y + GRW+DVARVR L +   +   +D
Sbjct: 571 RSHGNMELAFYAADRLLELKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRD 630

Query: 506 PGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQGYMP--GTEWVLHNIKEEKE 563
             W  I    +  R +   H  A E++  LE+++  A+  GY P      +L + KE  +
Sbjct: 631 RSWIAIRDKVYFFRADDMTHPQATELYQLLENLLEKAKAVGYEPYQNAPELLFDSKEGDD 690

Query: 564 E----ALGC----HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           +    A G     HSE+LA+A GL++T PG T+++ K +T+C DCHS +KY S ++ REI
Sbjct: 691 DKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLLANREI 750

Query: 616 VLRDT-RFHYFKDGTCSCRDY 635
           V+RD+ R H FKDG CSC D+
Sbjct: 751 VVRDSKRLHKFKDGRCSCGDF 771



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 140/316 (44%), Gaps = 59/316 (18%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L   R LH  +VK+G   D FV   L ++Y++   +R A ++FD  P+KN    V+ W  
Sbjct: 92  LGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKN----VVTWTA 147

Query: 205 LINGCSKIGYLRKAVELF----------------GMMPKKNVASWV-------------- 234
           LI G +       A+E+F                GM+   + A  +              
Sbjct: 148 LITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYG 207

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE-AEKALAMF 284
                    SL   + + GDL+     F+  P+K V++WT MI+  +++    +  L++F
Sbjct: 208 ADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLF 267

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYA 342
             ML+ GV  N+FT+ S +S C     +  G +V  +  C   G +    +  + + +Y 
Sbjct: 268 LDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAF--CYKVGCEANLPVKNSTMYLYL 325

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLA---------IHGRYE--QAIQYFKKMMYS 391
           + G  + A  +F E     ++TW AMI G A         +H R    QA++ F+ ++ S
Sbjct: 326 RKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRS 385

Query: 392 GTEPDGTVFLAILTAC 407
             +PD   F +IL+ C
Sbjct: 386 ELKPDLFTFSSILSVC 401



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/212 (30%), Positives = 109/212 (51%), Gaps = 5/212 (2%)

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQM 256
           ++  L++ C + G L  A  L G M K   A+      SL++ +MR    + A  LF+ M
Sbjct: 78  MYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGM 137

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           P+K VV+WTA+I G + N E   AL +F +ML+ G   + +T+   LSAC+    ++ G 
Sbjct: 138 PDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQ 197

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +VH Y          ++G +L  +Y K G++E+    F  T +K+++TWT MI   A   
Sbjct: 198 QVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDE 257

Query: 377 RY-EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            Y +  +  F  M+  G  P+     ++++ C
Sbjct: 258 NYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 289



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/129 (25%), Positives = 60/129 (46%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           ML  G        V  L  C + G L A   +H ++          + T+LV++Y +C +
Sbjct: 67  MLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATSLVNVYMRCAS 126

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
              A  +F    +K+++TWTA+I G  ++     A++ F +M+  G  P       +L+A
Sbjct: 127 SRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPSHYTLGGMLSA 186

Query: 407 CWYSGQVKL 415
           C  + ++ L
Sbjct: 187 CSAARRIDL 195


>gi|224088870|ref|XP_002308572.1| predicted protein [Populus trichocarpa]
 gi|222854548|gb|EEE92095.1| predicted protein [Populus trichocarpa]
          Length = 433

 Score =  318 bits (815), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/433 (39%), Positives = 248/433 (57%), Gaps = 32/433 (7%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           ++ GF R G +    +LF++MPE+ V+SW  M+  +  NG+  +AL  F +M ++G+  +
Sbjct: 1   MLAGFARDGQVSVVQKLFDEMPERDVISWNTMLMAYVHNGKLGEALECFKRMRESGLVPD 60

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           + T+V+ LSA A++  LE G  +H+ I      +  +IGTAL+DMYAKCG IE + L+F 
Sbjct: 61  EATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFE 120

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               +D+ TW  MI GLA HG  + A+  F++ +  G  P    F+ +L AC  +G VK 
Sbjct: 121 NMPRRDVSTWNVMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKE 180

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------------------- 453
             ++F  M   Y IEP ++H+  +V+LL R G   +                        
Sbjct: 181 GRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPVLWAMVLCAC 240

Query: 454 ------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                 +  +    +L++L P +   YV L++IYA   +W+DV RVR LM  R+  K  G
Sbjct: 241 RIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAG 300

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEE 564
           WS IE  G VHRF AG   H+ + EI   LE I       GY+P    VLH+I +EEKE 
Sbjct: 301 WSLIEARGKVHRFVAGHREHEQSLEIQKMLEIIETRLAAAGYVPNVSPVLHDIGEEEKEN 360

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
           A+  HSE+LA+AFGL+ T PG+ I+IVK L +C DCH + K  S++ +REI++RD +RFH
Sbjct: 361 AIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFH 420

Query: 624 YFKDGTCSCRDYW 636
           +FK+G CSC DYW
Sbjct: 421 HFKEGKCSCLDYW 433


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 181/592 (30%), Positives = 317/592 (53%), Gaps = 67/592 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSK 137
           ++ A+S+F++   +++  +N +I G  +N      +  F  ML  S + P+  T   V  
Sbjct: 429 MELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS 488

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A+L +L +G+ +H  I+++G+   + +   L   Y + G    A ++ D+        
Sbjct: 489 ACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQ-------- 540

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                                     ++   NV S+ +L++G+++ GD K+A E+F+ M 
Sbjct: 541 -------------------------AVVADLNVISFTALLEGYVKLGDTKQAREIFDIMN 575

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
            + V++WTAMI G+ QNG+ ++A+ +F  M+  G   N  T+ + LSACA +  L+ G +
Sbjct: 576 NRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQ 635

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHG 376
           +H     +      ++  A++ +YA+ G++  A  VF +    K+ +TWT+MI  +A HG
Sbjct: 636 IHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             EQA+  F++M+  G +PD   ++ +L+AC ++G V     +++ M+ ++ I P + H+
Sbjct: 696 LGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHY 755

Query: 437 TVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLKP 468
             +V+L +R G  ++ ++  Q                             +  KLL + P
Sbjct: 756 ACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDP 815

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HK 526
            +  +Y  L+N+Y+A GRW D AR+  L + + +KK+ G+S+  V G VH F A    H 
Sbjct: 816 HNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHP 875

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPG 585
               I+ K  ++    ++ G++P    VLH++ +E KEE L  HSEKLA+AFGLI T   
Sbjct: 876 QRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEK 935

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           TT++I+K L +C DCH+ +K+ SK   REI++RD TRFH+F+DG CSC+DYW
Sbjct: 936 TTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 94/357 (26%), Positives = 155/357 (43%), Gaps = 69/357 (19%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F     ++   + ++I GL  +  F   +  F+ M+     P++ T   V  S A++  
Sbjct: 303 VFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEA 362

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             +GR +H  +VK G+     V   +  MY + G    A  VF    E+ +  SV  WNV
Sbjct: 363 CGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVF----ERMQVRSVSSWNV 418

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
           +++  +  G +  AV +F  M ++++ SW                               
Sbjct: 419 MVSLYTHQGRMELAVSMFENMVERSIVSW------------------------------- 447

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVGALEAGVRVHNYIS 323
             +I G++QNG    AL  F +ML A     D FTV S LSACA +  L+ G ++H+YI 
Sbjct: 448 NTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYIL 507

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLV-----------------------FGETKE- 359
                    I  AL+  YAK G++E A  +                        G+TK+ 
Sbjct: 508 RTGMPCSSQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQA 567

Query: 360 ---------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                    +D++ WTAMI G   +G+ ++A++ F+ M+  G EP+     A+L+AC
Sbjct: 568 REIFDIMNNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSAC 624



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 156/358 (43%), Gaps = 47/358 (13%)

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S GR +H   VK+G+    ++  +L   Y  +G +RG F                     
Sbjct: 226 SAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCF--------------------- 264

Query: 206 INGCSKIGYLRKAVELFGMMP--KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                     R+A  LF  +P  ++N  +W SL+  + + G L  A  +F +MP++  VS
Sbjct: 265 ----------REARCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVS 314

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           WT MI G +++G    A+  F  M+  G   + FT+ + LS+CA + A   G +VH ++ 
Sbjct: 315 WTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVV 374

Query: 324 CNDFGLKGAIGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
               GL   +  A  ++ MY KCG+ E A  VF   + + + +W  M+      GR E A
Sbjct: 375 --KLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELA 432

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F+ M+    E     +  I+     +G   +AL FF  M     +EP     T V++
Sbjct: 433 VSMFENMV----ERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLS 488

Query: 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
             + +     G Q   +S+     L+   P S  +++ + +   +   V   R +M +
Sbjct: 489 ACANLRMLKMGKQ--MHSYI----LRTGMPCSSQIMNALISTYAKSGSVETARRIMDQ 540


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 197/666 (29%), Positives = 336/666 (50%), Gaps = 80/666 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I+S   ++   ++ RQ+  ++   N+ + +     L+S    ++ I+ A ++F+    +N
Sbjct: 54  IVSGYFANGLPREARQMFDEMPERNIVSWN----GLVSGYIKNRMIEEARNVFEIMPERN 109

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +  +++G  +       +   +   R+  R N +++  +   +     +   R L+ 
Sbjct: 110 VVSWTAMVKGYVQEGMV---VEAELLFWRMPER-NEVSWTVMFGGLIDGGRIDDARKLYD 165

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           ++       D     ++     + G+   A ++FDE  E+N    V+ W  +I G  +  
Sbjct: 166 MMPGK----DVVASTNMIGGLCREGRVDEAREIFDEMRERN----VITWTTMITGYGQNK 217

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV----------- 262
            +  A +LF +MP+K   SW S++ G+   G ++ A E FE MP K V+           
Sbjct: 218 RVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVALGE 277

Query: 263 --------------------SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
                               +W  MI  + + G   +AL +F QM   GVR +  +++S 
Sbjct: 278 VGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISI 337

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LS CA + +L+ G +VH ++    F     + + L+ MY KCG +  A LVF     KD+
Sbjct: 338 LSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDI 397

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           + W ++I G A HG  E+A++ F +M  SGT P+    +AILTAC Y G+++  L  F+S
Sbjct: 398 IMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFES 457

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--NSQN---------------------- 458
           M   + + P+V+H++  V++L R G+  +  +  NS                        
Sbjct: 458 MESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLD 517

Query: 459 ----SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
               +  KL +++P++   Y+LLS+I A+  +W DVA +R  M+ +++ K PG S+IEV 
Sbjct: 518 LAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVG 577

Query: 515 GHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHS 570
             VH F  GG   H     I   LE      RE GY P    VLH++ +EEK ++L  HS
Sbjct: 578 KKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHS 637

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGT 629
           E+LA+A+GL++   G  I+++K L +CGDCH+ +K  SK+++REI+LRD  RFH+F +G 
Sbjct: 638 ERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGE 697

Query: 630 CSCRDY 635
           CSCRDY
Sbjct: 698 CSCRDY 703



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 140/273 (51%), Gaps = 21/273 (7%)

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
           ++G+   A K FD      + +++  WN +++G    G  R+A ++F  MP++N+ SW  
Sbjct: 29  RIGQINEARKFFDSL----RYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNG 84

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+ G+++   +++A  +FE MPE+ VVSWTAM+ G+ Q G   +A  +F++M +     N
Sbjct: 85  LVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPE----RN 140

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           + +           G ++   ++++ +   D        T ++    + G ++ A  +F 
Sbjct: 141 EVSWTVMFGGLIDGGRIDDARKLYDMMPGKDV----VASTNMIGGLCREGRVDEAREIFD 196

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E +E++++TWT MI G   + R + A + F+ M     E     + ++L     SG+++ 
Sbjct: 197 EMRERNVITWTTMITGYGQNKRVDVARKLFEVM----PEKTEVSWTSMLLGYTLSGRIED 252

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           A  FF+ M     ++P +  + ++V  L  VG+
Sbjct: 253 AEEFFEVMP----MKPVIACNAMIV-ALGEVGE 280


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  318 bits (815), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 201/664 (30%), Positives = 324/664 (48%), Gaps = 79/664 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA-- 105
           +QIH  +    L +   +   LIS  S +  ++ A  +FD    +N   +N +I   A  
Sbjct: 254 KQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAAL 313

Query: 106 -------------ENSHFQ------SCI--SHFVFMLRLSV------------RPNRLTY 132
                        E+S  +      +C+   HF+   +  V            +PN  + 
Sbjct: 314 GFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSM 373

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
             V ++++ L  L++G+  H  ++++G + D +V   L DMYV+      A  VFD    
Sbjct: 374 TSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKN 433

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKK 248
           +N    +  WN L++G S  G    A+ L   M K+    ++ +W  +I G+   G  K+
Sbjct: 434 RN----IFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 489

Query: 249 AGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           A  +  Q    G    VVSWTA+I+G SQ G    +L  F QM   GV  N  ++   L 
Sbjct: 490 ALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLR 549

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA +  L+ G  +H     N F     + TAL+DMY+K  +++ A  VF   + K L +
Sbjct: 550 ACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLAS 609

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W  MI G AI G  ++AI  F +M   G  PD   F A+L+AC  SG +     +FDSM 
Sbjct: 610 WNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMI 669

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNS 456
            DY I P ++H+  +V+LL R G   + +                            + +
Sbjct: 670 TDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFA 729

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           + +   L +L+P + ++Y+L+ N+Y+   RW+D+  +R LM    ++    WS+I++N  
Sbjct: 730 ETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQR 789

Query: 517 VHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKL 573
           VH F +    H  A +I+ +L  +++  ++ GY+P    V  N+ E EK++ L  H+EKL
Sbjct: 790 VHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKL 849

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+ +GLI+   G  I+++K   IC DCHS  KY S +  RE+ LRD  RFH+F++G CSC
Sbjct: 850 AITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSC 909

Query: 633 RDYW 636
            D+W
Sbjct: 910 NDFW 913



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 133/285 (46%), Gaps = 33/285 (11%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           V ++   +  L+  + +H  + + G++ D  +   L  MY + GK   A +VFD    +N
Sbjct: 240 VLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRN 299

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
            S     WN +I+  + +G+L  A  LF                  +   D+K       
Sbjct: 300 TSS----WNSMISSYAALGFLNDAWSLFYE----------------LESSDMK------- 332

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
             P+  +V+W  +++G   +G  E+ L +  +M   G + N  ++ S L A +++G L  
Sbjct: 333 --PD--IVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNM 388

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G   H Y+  N F     +GT+L+DMY K  ++ +A  VF   K +++  W +++ G + 
Sbjct: 389 GKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSF 448

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILT--ACWYSGQVKLAL 417
            G +E A++   +M   G +PD   +  +++  A W  G+  LA+
Sbjct: 449 KGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAV 493



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 166/363 (45%), Gaps = 39/363 (10%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASW 233
           G      +VF E   K       +++V +  C+++  +   +E+ G + K+    +V   
Sbjct: 112 GSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLR 171

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +L++ + R   L+KA ++F +MP    + W   I    Q+ + +K + +F +M  + ++
Sbjct: 172 CALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLK 231

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAAS 351
           A   T+V  L AC K+GAL A  ++H Y+    FGL   +     L+ MY+K G +E A 
Sbjct: 232 AETATIVRVLQACGKMGALNAAKQIHGYVF--RFGLDSDVSLCNPLISMYSKNGKLELAR 289

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF   + ++  +W +MI   A  G    A   F ++  S  +PD   +  +L+  +  G
Sbjct: 290 RVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHG 349

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV-----GQDSQGYQNSQNSF------ 460
             +  LN    M+ + F +P+    T V+  +S +     G+++ GY   +N F      
Sbjct: 350 YKEEVLNILQRMQGEGF-KPNSSSMTSVLQAISELGFLNMGKETHGYV-LRNGFDCDVYV 407

Query: 461 -TKLLQLKPKH---PSSYVLLSNI--------------YAAEGRWKDVARVRTLMQRRSI 502
            T L+ +  K+    S+  +  N+              Y+ +G ++D  R+   M++  I
Sbjct: 408 GTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGI 467

Query: 503 KKD 505
           K D
Sbjct: 468 KPD 470



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 9/272 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF-SQNGEAEKALAMFFQMLDAGVR 293
           +LI  ++  GD   A  +F     +  + W + +  F S  G     L +F ++   GV 
Sbjct: 71  NLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVV 130

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            +      AL  C +V  +  G+ +H  +    F L   +  AL++ Y +C  +E A+ V
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 190

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E    + L W   I       + ++ ++ F+KM +S  + +    + +L AC   G +
Sbjct: 191 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGAL 250

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS 473
             A      + F + ++  V     ++++ S+ G+     + ++  F     ++ ++ SS
Sbjct: 251 NAAKQIHGYV-FRFGLDSDVSLCNPLISMYSKNGK----LELARRVFD---SMENRNTSS 302

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           +  + + YAA G   D   +   ++   +K D
Sbjct: 303 WNSMISSYAALGFLNDAWSLFYELESSDMKPD 334


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 213/651 (32%), Positives = 333/651 (51%), Gaps = 71/651 (10%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-KN 93
           +SL+H+       + IH   I   L A+  + T L+   S  K +  A  +F      KN
Sbjct: 147 LSLLHTG------KMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKN 200

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
              +  ++ G A+N      I  F  M    +  N  T+P +  +  S+S  + GR +H 
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHG 260

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            I+ SG   + +V+  L DMY + G    A  + D      + + V+ WN +I GC   G
Sbjct: 261 CIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTM----EIDDVVCWNSMIVGCVTHG 316

Query: 214 YLRKAVELFGMMPKKNV-------------------------------------ASWVS- 235
           Y+ +A+ LF  M  +++                                        VS 
Sbjct: 317 YMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSN 376

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            L+D + ++G+L  A ++F ++ +K V+SWT+++ G+  NG  EKAL +F  M  A V  
Sbjct: 377 ALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDL 436

Query: 295 NDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           + F V    SACA++  +E G +VH N+I  +   L  A   +L+ MYAKCG +E A  V
Sbjct: 437 DQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSA-ENSLITMYAKCGCLEDAIRV 495

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQ 412
           F   + +++++WTA+I G A +G  E    YF+ M    G +P    +  ++     +G+
Sbjct: 496 FDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGK 555

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS--RV-GQDSQGYQNSQNSFTKLLQLKPK 469
           +  A +  + M     +EP     T+  +LLS  RV G    G +  +N    L++L+P 
Sbjct: 556 INEAEHLLNRMD----VEPDA---TIWKSLLSACRVHGNLELGERAGKN----LIKLEPS 604

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKL 527
           +   YVLLSN+++  GRW+D A +R  M+   I K+PG+S+IE+   VH F  E   H L
Sbjct: 605 NSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPL 664

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
           A EI+SK++++M   +E G++P   + L ++ EE KE +L  HSEKLA+AFGL+    G 
Sbjct: 665 AAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGA 724

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
            I+I K L +CGDCHS MKY S I +R I+LRD   FH+F +G CSC D+W
Sbjct: 725 PIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 113/206 (54%), Gaps = 1/206 (0%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N L++  SK G + +A +LF  MP ++  +W  +I  +   G+L +A +LF + P K  +
Sbjct: 41  NQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSI 100

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W+++++G+ +NG   + L  F QM   G + + +T+ S L AC+ +  L  G  +H Y 
Sbjct: 101 TWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYA 160

Query: 323 SCNDFGLKGAIGTALVDMYAKCGN-IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
                     + T LVDMY+KC   +EA  L F     K+ + WTAM+ G A +G   +A
Sbjct: 161 IKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKA 220

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           IQ FK+M   G E +   F +ILTAC
Sbjct: 221 IQCFKEMRNQGMESNHFTFPSILTAC 246



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 128/273 (46%), Gaps = 44/273 (16%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PK 227
           Y  LG    A K+F+ETP KN     + W+ L++G  K G   + +  F  M      P 
Sbjct: 78  YANLGNLVEARKLFNETPIKNS----ITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPS 133

Query: 228 K---------------------------------NVASWVSLIDGFMRKGDLKKAGELFE 254
           +                                 N+     L+D + +   L +A  LF 
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFF 193

Query: 255 QMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
            +P+ K  V WTAM+ G++QNGE+ KA+  F +M + G+ +N FT  S L+AC  + A  
Sbjct: 194 SLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYA 253

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G +VH  I  + FG    + +ALVDMYAKCG++ +A ++    +  D++ W +MI G  
Sbjct: 254 FGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCV 313

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            HG  E+A+  F KM       D   + ++L +
Sbjct: 314 THGYMEEALVLFHKMHNRDIRIDDFTYPSVLKS 346



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 100/436 (22%), Positives = 173/436 (39%), Gaps = 84/436 (19%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     +++    SN+ T   I++   S ++    RQ+H  II      +  + + L+ 
Sbjct: 220 AIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVD 279

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +    +  A  I D     ++  +N +I G   + + +  +  F  M    +R +  T
Sbjct: 280 MYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFT 339

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           YP V KS+AS   L +G  +H L +K+G +    V   L DMY + G    A  VF++  
Sbjct: 340 YPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKIL 399

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--------------------- 230
           +K+    V+ W  L+ G    G+  KA++LF  M    V                     
Sbjct: 400 DKD----VISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIE 455

Query: 231 ------ASWV------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                 A+++            SLI  + + G L+ A  +F+ M  + V+SWTA+I G++
Sbjct: 456 FGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYA 515

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG  E   + F  M                    KV                 +G+K A
Sbjct: 516 QNGLVETGQSYFESM-------------------EKV-----------------YGIKPA 539

Query: 333 IG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
                 ++D+  + G I EA  L+     E D   W +++    +HG  E   +  K ++
Sbjct: 540 SDHYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLI 599

Query: 390 YSGTEPDGTVFLAILT 405
               EP  ++   +L+
Sbjct: 600 --KLEPSNSLPYVLLS 613


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 204/659 (30%), Positives = 335/659 (50%), Gaps = 77/659 (11%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IH   +  N FA   +   LI+  +    ++ A  +F     ++   +N L+ GL +N  
Sbjct: 270 IHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNEL 329

Query: 110 FQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
           ++  +++F  M   + +P++++    ++ S  S +LL+ G+ +H   +++G++ +  +  
Sbjct: 330 YRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLN-GKEVHAYAIRNGLDSNMQIGN 388

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            L DMY +    +     F+   EK+    ++ W  +I G ++     +A+ LF  +  K
Sbjct: 389 TLIDMYAKCCCVKHMGYAFECMHEKD----LISWTTIIAGYAQNECHLEAINLFRKVQVK 444

Query: 229 NV-------------------ASWVSLIDGFMRKGDLKK-------------------AG 250
            +                    +++  I G++ K DL                     A 
Sbjct: 445 GMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYAR 504

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
             FE +  K +VSWT+MI     NG   +AL +F+ +    ++ +   ++SALSA A + 
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           +L+ G  +H ++    F L+G I ++LVDMYA CG +E +  +F   K++DL+ WT+MI 
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMIN 624

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
              +HG   +AI  FKKM      PD   FLA+L AC +SG +     FF+ M++ Y +E
Sbjct: 625 ANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLE 684

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------------------- 462
           P  +H+  +V+LLSR     + YQ  ++   K                            
Sbjct: 685 PWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKE 744

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           LLQ   K+   Y L+SNI+AA+GRW DV  VR  M+   +KK+PG S+IEV+  +H F A
Sbjct: 745 LLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMA 804

Query: 523 --GGHKLAKEIHSKLEDIMAG-AREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFG 578
               H    +I+ KL        ++ GY+  T++V HN+ +EEK + L  HSE+LAL +G
Sbjct: 805 RDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYG 864

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L+ T  GT+I+I K L IC DCH+  K AS++SQR +V+RD  RFH+F+ G CSC D+W
Sbjct: 865 LLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 182/413 (44%), Gaps = 43/413 (10%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++ L  +  +  Q +Q+HA+++  +L  S+ + T+L+       S+  A+ +FD  T + 
Sbjct: 52  LLDLCVAVKALPQGQQLHARLLKSHL--SAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +N ++     +  +   I  +  M  L V  +  T+P V K+  +L    LG  +H 
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           + VK G     FV   L  MY + G   GA  +FD      + E  + WN +I+     G
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGI--MMEKEDTVSWNSIISAHVTEG 227

Query: 214 YLRKAVELFGMMPKKNVAS----WVSLIDG------------------------------ 239
              +A+ LF  M +  VAS    +V+ + G                              
Sbjct: 228 KCLEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVAN 287

Query: 240 -----FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
                + + G ++ A  +F  M  +  VSW  +++G  QN     AL  F  M ++  + 
Sbjct: 288 ALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKP 347

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +  +V++ ++A  + G L  G  VH Y   N       IG  L+DMYAKC  ++     F
Sbjct: 348 DQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAF 407

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
               EKDL++WT +I G A +  + +AI  F+K+   G + D  +  ++L AC
Sbjct: 408 ECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRAC 460



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/219 (26%), Positives = 112/219 (51%), Gaps = 4/219 (1%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVS--LIDGFMRKGDLKKAGELFEQMPEKG 260
           ++L++ C  +  L +  +L   + K +++++++  L+  + + G LK A ++F++M E+ 
Sbjct: 50  SLLLDLCVAVKALPQGQQLHARLLKSHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERT 109

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           + +W AM+  F  +G+  +A+ ++ +M   GV  +  T  S L AC  +G    G  +H 
Sbjct: 110 IFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEK-DLLTWTAMIWGLAIHGRY 378
                 FG    +  AL+ MY KCG++  A ++F G   EK D ++W ++I      G+ 
Sbjct: 170 VAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKC 229

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            +A+  F++M   G   +   F+A L        VKL +
Sbjct: 230 LEALSLFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGM 268


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 199/634 (31%), Positives = 322/634 (50%), Gaps = 85/634 (13%)

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
           ++F+ +  K ++  +N +I  LA +      +  F  M +LS+ P R ++P   K+ +SL
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
             +  G+  H      G + D FV   L  MY   GK   A KVFDE P+++    ++ W
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRD----IVSW 145

Query: 203 NVLINGCSKIGYLRKAVELF----------------------------GMMPKKNVASWV 234
             +I G    G    AV LF                              +P K +   +
Sbjct: 146 TSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESI 205

Query: 235 -----------------SLIDGFMRKGD--LKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                            +L+D + + G+  +  A ++F+Q+ +K  VS+ ++++ ++Q+G
Sbjct: 206 HSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSG 265

Query: 276 EAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
            + +A  +F +++ +  V  N  T+ + L A +  GAL  G  +H+ +          +G
Sbjct: 266 MSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVG 325

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           T+++DMY KCG +E A   F   K K++ +WTAMI G  +HG   +A++ F  M+ SG  
Sbjct: 326 TSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVR 385

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   F+++L AC ++G       +F++M+  + +EP ++H+  +V+LL R G   + Y 
Sbjct: 386 PNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYD 445

Query: 455 NSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
             Q                             S  +L +L   +   Y+LLS+IYA  GR
Sbjct: 446 LIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGR 505

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGARE 544
           WKDV RVR +M+ R + K PG+S +E+NG VH F  G   H   ++I+  L ++     E
Sbjct: 506 WKDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLE 565

Query: 545 QGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSL 603
            GY+  T  V H++ +EEKE  L  HSEKLA+AFG++ T PG+T+ +VK L +C DCH++
Sbjct: 566 AGYVSNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNV 625

Query: 604 MKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K  SKI  RE V+RD  RFH+FKDG CSC DYW
Sbjct: 626 IKLISKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 168/388 (43%), Gaps = 62/388 (15%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q H Q  +    +   +++ LI   S    ++ A  +FD    +++  +  +IRG   N
Sbjct: 96  KQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLN 155

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS---------LGRGLHCLIVKS 158
            +    +S F  +L   V  N         S+  +S++S         L   +H  ++K 
Sbjct: 156 GNALDAVSLFKDLL---VDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKR 212

Query: 159 GVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           G +    V   L D Y + G+     A K+FD+  +K++    + +N +++  ++ G   
Sbjct: 213 GFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR----VSYNSIMSVYAQSGMSN 268

Query: 217 KAVELFGMMPKKNVASW----------------------------------------VSL 236
           +A E+F  + K  V ++                                         S+
Sbjct: 269 EAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSI 328

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           ID + + G ++ A + F++M  K V SWTAMI G+  +G A KAL +F  M+D+GVR N 
Sbjct: 329 IDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNY 388

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVF 354
            T VS L+AC+  G    G R  N +    FG++  +     +VD+  + G ++ A  + 
Sbjct: 389 ITFVSVLAACSHAGLHVEGWRWFNAMK-GRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLI 447

Query: 355 GETKEK-DLLTWTAMIWGLAIHGRYEQA 381
              K K D + W++++    IH   E A
Sbjct: 448 QRMKMKPDSIIWSSLLAACRIHKNVELA 475



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 8/196 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N IT + ++  +  S + +  + IH Q+I   L     + T +I        ++ A   F
Sbjct: 286 NAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAF 345

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KN+  +  +I G   + H    +  F  M+   VRPN +T+  V  + +   L  
Sbjct: 346 DRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHV 405

Query: 147 LG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G R  + +  + GVE       H   M   LG+     K +D           ++W+ L
Sbjct: 406 EGWRWFNAMKGRFGVEPGL---EHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSL 462

Query: 206 INGCSKIGYLRKAVEL 221
           +  C     + K VEL
Sbjct: 463 LAACR----IHKNVEL 474


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  318 bits (814), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 188/567 (33%), Positives = 297/567 (52%), Gaps = 83/567 (14%)

Query: 148 GRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           GR LH L ++SG+   DA+    L  MY    +   A + FDE P  N     ++   + 
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNP----VIVTAMA 162

Query: 207 NGCSKIGYLRKAVELFGMM------------------------PKKNVASWV-------- 234
           +GC +   +   + +F  M                        P + +   +        
Sbjct: 163 SGCMRNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIG 222

Query: 235 ---------SLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                    ++ID + + G  DL  A +LF+ M ++ VVSW  MI  ++QNG + +AL +
Sbjct: 223 LDGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGL 281

Query: 284 FFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
           + +ML  G  VR N  T+ + L ACA  GA++ G R+HN +          +GT++VDMY
Sbjct: 282 YSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMY 341

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           +KCG +E A   F + K K++L+W+AMI G  +HG  ++A+  F  M  SG +P+   F+
Sbjct: 342 SKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFI 401

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------- 453
            +L AC ++G +     ++++M+ ++ IEP V+H+  +V+LL R G   + Y        
Sbjct: 402 TVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKV 461

Query: 454 --------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                               + ++    +L +L   +   YVLLSNIYA  G WK+V R+
Sbjct: 462 KPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEAGMWKEVERM 521

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R L++ R I+K PG+S +E+ G  H F  G   H   KEI++ LE ++    + GY+P T
Sbjct: 522 RVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERIHDAGYVPNT 581

Query: 552 EWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
             VLH++  EE+E  L  HSEKLA+AF L+ +  G+ I ++K L +C DCH+ +K  +K+
Sbjct: 582 GSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCHAAIKIITKL 641

Query: 611 SQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + REI++RD  RFH+FKDG CSC DYW
Sbjct: 642 TGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 19/236 (8%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPNRLTYPFVSKSV 139
           A  +FD    +++  +N +I   A+N      +  +  ML +   VR N +T   V  + 
Sbjct: 248 ARKLFD-MMDRDVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLAC 306

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A    +  G+ +H  +V+ G+E + +V   + DMY + GK   A+K F    +K K +++
Sbjct: 307 AHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF----QKIKGKNI 362

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
           L W+ +I G    GY ++A+ +F  M     K N  ++++++      G L +    +  
Sbjct: 363 LSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNT 422

Query: 256 MP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           M      E GV  +  M++   + G  ++A  +  +M    V+ +     + LSAC
Sbjct: 423 MKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM---KVKPDAALWGALLSAC 475



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 16/200 (8%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T + ++     + + +  ++IH Q++   L  +  + T ++   S    ++ A   F
Sbjct: 295 NAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAF 354

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                KN+  ++ +I G   + + Q  +  F  M +  ++PN +T+  V  + +   LLS
Sbjct: 355 QKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLS 414

Query: 147 LGRGLHCLI-----VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            GR  +  +     ++ GVE       H   M   LG+     + +    E        L
Sbjct: 415 EGRYWYNTMKTEFGIEPGVE-------HYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAL 467

Query: 202 WNVLINGCSKIGYLRKAVEL 221
           W  L++ C     + K VEL
Sbjct: 468 WGALLSACR----IYKNVEL 483


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 193/660 (29%), Positives = 328/660 (49%), Gaps = 75/660 (11%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            +Q+HA        ++++I   L++  +    I+ AL  F     +N+ ++NV++      
Sbjct: 369  QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 428

Query: 108  SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
               ++    F  M    + PN+ TYP + K+   L  L LG  +H  I+K+  + +A+V 
Sbjct: 429  DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVC 488

Query: 168  VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
              L DMY +LGK   A+ +      K+    V+ W  +I G ++  +  KA+  F  M  
Sbjct: 489  SVLIDMYAKLGKLDTAWDILIRFAGKD----VVSWTTMIAGYTQYNFDDKALTTFRQMLD 544

Query: 228  KNVAS---------------------------------------WVSLIDGFMRKGDLKK 248
            + + S                                         +L+  + R G +++
Sbjct: 545  RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEE 604

Query: 249  AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
            +   FEQ      ++W A+++GF Q+G  E+AL +F +M   G+  N+FT  SA+ A ++
Sbjct: 605  SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASE 664

Query: 309  VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
               ++ G +VH  I+   +  +  +  AL+ MYAKCG+I  A   F E   K+ ++W A+
Sbjct: 665  TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAI 724

Query: 369  IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
            I   + HG   +A+  F +M++S   P+    + +L+AC + G V   + +F+SM  +Y 
Sbjct: 725  INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 784

Query: 429  IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-------------------------- 462
            + P  +H+  VV++L+R G  S+  +  Q    K                          
Sbjct: 785  LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 844

Query: 463  --LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
              LL+L+P+  ++YVLLSN+YA   +W      R  M+ + +KK+PG S+IEV   +H F
Sbjct: 845  HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 904

Query: 521  EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAF 577
              G   H LA EIH   +D+   A E GY+     +L+ ++ E+K+  +  HSEKLA++F
Sbjct: 905  YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 964

Query: 578  GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            GL+       I ++K L +C DCH+ +K+ SK+S REI++RD  RFH+F+ G CSC+DYW
Sbjct: 965  GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 147/330 (44%), Gaps = 45/330 (13%)

Query: 125 VRPNRLTYPFVSKS-VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           +RPN  T  ++ +  + +   L  GR LH  I+K G++ +  +   L D Y+  G   GA
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------- 232
           FKVFDE PE+    ++  WN +I   +    + +   LF  M  +NV             
Sbjct: 100 FKVFDEMPER----TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA 155

Query: 233 -----------------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                                           LID + R G +  A  +F+ +  K   S
Sbjct: 156 CRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 215

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W AMI+G S+N    +A+ +F  M   G+    +   S LSAC K+ +LE G ++H  + 
Sbjct: 216 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 275

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
              F     +  ALV +Y   GN+ +A  +F    ++D +T+  +I GL+  G  E+A++
Sbjct: 276 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 335

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
            FK+M   G EPD     +++ AC   G +
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSADGTL 365



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 189/433 (43%), Gaps = 44/433 (10%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P++   +  +   + ++ S  + R++H+QI+   L ++  ++ +L         +  A 
Sbjct: 41  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 100

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD    + +  +N +I+ LA  +        FV M+  +V PN  T+  V ++    S
Sbjct: 101 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 160

Query: 144 L-LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           +   +   +H  I+  G+     V   L D+Y + G    A +VFD    K+ S     W
Sbjct: 161 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS----W 216

Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWV---------------------- 234
             +I+G SK     +A+ LF      G+MP     S V                      
Sbjct: 217 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 276

Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                      +L+  +   G+L  A  +F  M ++  V++  +ING SQ G  EKA+ +
Sbjct: 277 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 336

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F +M   G+  +  T+ S + AC+  G L  G ++H Y +   F     I  AL+++YAK
Sbjct: 337 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 396

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           C +IE A   F ET+ ++++ W  M+    +      + + F++M      P+   + +I
Sbjct: 397 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 456

Query: 404 LTACWYSGQVKLA 416
           L  C   G ++L 
Sbjct: 457 LKTCIRLGDLELG 469



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 128/299 (42%), Gaps = 16/299 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S+ +  T+ +S      + K+ +QIHAQ  +    +       L++  S    I+ +   
Sbjct: 549 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLA 608

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+     +   +N L+ G  ++ + +  +  FV M R  +  N  T+    K+ +  + +
Sbjct: 609 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 668

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +H +I K+G + +  V   L  MY + G    A K F E   KN+    + WN +
Sbjct: 669 KQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE----VSWNAI 724

Query: 206 INGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           IN  SK G+  +A++ F  M   NV     + V ++      G + K    FE M  +  
Sbjct: 725 INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 784

Query: 262 VS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +S     +  +++  ++ G   +A     +M    ++ +     + LSAC     +E G
Sbjct: 785 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEM---PIKPDALVWRTLLSACVVHKNMEIG 840



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 291 GVRANDFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           G+R N  T+   L  C K  G+L+ G ++H+ I        G +   L D Y   G++  
Sbjct: 39  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 98

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A  VF E  E+ + TW  MI  LA      +    F +M+     P+   F  +L AC
Sbjct: 99  AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 156


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  317 bits (813), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 193/660 (29%), Positives = 328/660 (49%), Gaps = 75/660 (11%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            +Q+HA        ++++I   L++  +    I+ AL  F     +N+ ++NV++      
Sbjct: 409  QQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLL 468

Query: 108  SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
               ++    F  M    + PN+ TYP + K+   L  L LG  +H  I+K+  + +A+V 
Sbjct: 469  DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVC 528

Query: 168  VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
              L DMY +LGK   A+ +      K+    V+ W  +I G ++  +  KA+  F  M  
Sbjct: 529  SVLIDMYAKLGKLDTAWDILIRFAGKD----VVSWTTMIAGYTQYNFDDKALTTFRQMLD 584

Query: 228  KNVAS---------------------------------------WVSLIDGFMRKGDLKK 248
            + + S                                         +L+  + R G +++
Sbjct: 585  RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEE 644

Query: 249  AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
            +   FEQ      ++W A+++GF Q+G  E+AL +F +M   G+  N+FT  SA+ A ++
Sbjct: 645  SYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASE 704

Query: 309  VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
               ++ G +VH  I+   +  +  +  AL+ MYAKCG+I  A   F E   K+ ++W A+
Sbjct: 705  TANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAI 764

Query: 369  IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
            I   + HG   +A+  F +M++S   P+    + +L+AC + G V   + +F+SM  +Y 
Sbjct: 765  INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 824

Query: 429  IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-------------------------- 462
            + P  +H+  VV++L+R G  S+  +  Q    K                          
Sbjct: 825  LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAA 884

Query: 463  --LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
              LL+L+P+  ++YVLLSN+YA   +W      R  M+ + +KK+PG S+IEV   +H F
Sbjct: 885  HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944

Query: 521  EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAF 577
              G   H LA EIH   +D+   A E GY+     +L+ ++ E+K+  +  HSEKLA++F
Sbjct: 945  YVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAISF 1004

Query: 578  GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            GL+       I ++K L +C DCH+ +K+ SK+S REI++RD  RFH+F+ G CSC+DYW
Sbjct: 1005 GLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 147/330 (44%), Gaps = 45/330 (13%)

Query: 125 VRPNRLTYPFVSKS-VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           +RPN  T  ++ +  + +   L  GR LH  I+K G++ +  +   L D Y+  G   GA
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------- 232
           FKVFDE PE+    ++  WN +I   +    + +   LF  M  +NV             
Sbjct: 140 FKVFDEMPER----TIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA 195

Query: 233 -----------------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                                           LID + R G +  A  +F+ +  K   S
Sbjct: 196 CRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 255

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W AMI+G S+N    +A+ +F  M   G+    +   S LSAC K+ +LE G ++H  + 
Sbjct: 256 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 315

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
              F     +  ALV +Y   GN+ +A  +F    ++D +T+  +I GL+  G  E+A++
Sbjct: 316 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 375

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
            FK+M   G EPD     +++ AC   G +
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSADGTL 405



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/433 (23%), Positives = 189/433 (43%), Gaps = 44/433 (10%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P++   +  +   + ++ S  + R++H+QI+   L ++  ++ +L         +  A 
Sbjct: 81  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAF 140

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD    + +  +N +I+ LA  +        FV M+  +V PN  T+  V ++    S
Sbjct: 141 KVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGS 200

Query: 144 L-LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           +   +   +H  I+  G+     V   L D+Y + G    A +VFD    K+ S     W
Sbjct: 201 VAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS----W 256

Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWV---------------------- 234
             +I+G SK     +A+ LF      G+MP     S V                      
Sbjct: 257 VAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 316

Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                      +L+  +   G+L  A  +F  M ++  V++  +ING SQ G  EKA+ +
Sbjct: 317 LGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 376

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F +M   G+  +  T+ S + AC+  G L  G ++H Y +   F     I  AL+++YAK
Sbjct: 377 FKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAK 436

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           C +IE A   F ET+ ++++ W  M+    +      + + F++M      P+   + +I
Sbjct: 437 CADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 496

Query: 404 LTACWYSGQVKLA 416
           L  C   G ++L 
Sbjct: 497 LKTCIRLGDLELG 509



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 128/299 (42%), Gaps = 16/299 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S+ +  T+ +S      + K+ +QIHAQ  +    +       L++  S    I+ +   
Sbjct: 589 SDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLA 648

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+     +   +N L+ G  ++ + +  +  FV M R  +  N  T+    K+ +  + +
Sbjct: 649 FEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANM 708

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +H +I K+G + +  V   L  MY + G    A K F E   KN+    + WN +
Sbjct: 709 KQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNE----VSWNAI 764

Query: 206 INGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           IN  SK G+  +A++ F  M   NV     + V ++      G + K    FE M  +  
Sbjct: 765 INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYG 824

Query: 262 VS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +S     +  +++  ++ G   +A     +M    ++ +     + LSAC     +E G
Sbjct: 825 LSPKPEHYVCVVDMLTRAGLLSRAKEFIQEM---PIKPDALVWRTLLSACVVHKNMEIG 880



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 1/118 (0%)

Query: 291 GVRANDFTVVSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           G+R N  T+   L  C K  G+L+ G ++H+ I        G +   L D Y   G++  
Sbjct: 79  GIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG 138

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A  VF E  E+ + TW  MI  LA      +    F +M+     P+   F  +L AC
Sbjct: 139 AFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEAC 196


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 188/545 (34%), Positives = 301/545 (55%), Gaps = 44/545 (8%)

Query: 35  ISLIHSSNSTKQLRQIHAQII--LHNLFASSRITTQLISSASLHKSID--YALSIFDHFT 90
           +S + +  S K L+QIHA II  + +  A   I+T+L +  +    ID  YALS+     
Sbjct: 41  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 100

Query: 91  PKNLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             NL ++N +IRGLA  N+     +  +  ML   + P+  T PFV K+ A    +  G 
Sbjct: 101 TPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGE 160

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H   +K G+  D +V   L  MY      R A KVFD +P+++    ++ W  +I G 
Sbjct: 161 EVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD----LVSWTTMIQGY 216

Query: 210 SKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
            K+G+ R+ V L+ ++   NV   V    +L+D +++ GD   A ++F++MP K VVSW 
Sbjct: 217 VKMGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWN 275

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           +MI+G +Q G+ +++L MF +M   GV+ +D T+V+ L++CA +G LE G  VH Y+  N
Sbjct: 276 SMISGLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN 335

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                G IG ALVDMYAKCG+I+ A  VF     KD+ ++TAMI GLA+HG+  +A+  F
Sbjct: 336 QIRADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLF 395

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M   G EPD   F+ +LTAC + G V+    +F+ M   Y + P ++H+  +V+LL R
Sbjct: 396 SEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGR 455

Query: 446 VGQDSQGYQNSQNS----------------------------FTKLLQLKPKHPSSYVLL 477
            G  ++  +  +N                               K+ +++P+   +YVL+
Sbjct: 456 AGLINEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLM 515

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           SNIY++  RW+D  ++R  M+ R+++K PG S IE++G +H F+ G   H   KEI+  L
Sbjct: 516 SNIYSSANRWRDALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLL 575

Query: 536 EDIMA 540
           ++IM+
Sbjct: 576 DEIMS 580


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 198/643 (30%), Positives = 323/643 (50%), Gaps = 75/643 (11%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T LI + SL  ++ +A  +FD    K+   +  ++   +EN   +  ++ F  M    
Sbjct: 185 VGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTG 244

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            +PN        K+   LS   LG+G+H   VK+  + +  V   L DMY + G    A 
Sbjct: 245 FKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAH 304

Query: 185 KVFDETPEKNKSESVLLWNVLIN-----------------------------------GC 209
            +F+  P     + V+LW+ LI+                                    C
Sbjct: 305 AIFEMIPH----DDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQAC 360

Query: 210 SKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           + I +L    ++  +  K    S +    +L+D + +  +++ + E+F  + +   VSW 
Sbjct: 361 ANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWN 420

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            +I G+ Q+G AE AL++F +M  A + +   T  S L ACA   +++  V++H+ I  +
Sbjct: 421 TIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKS 480

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F     +  +L+D YAKCG I  A  VF    E D+++W ++I   A+HGR   A++ F
Sbjct: 481 TFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELF 540

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
            +M  S  + +   F+++L+ C  +G V   L  F+SM  D+ I+PS++H+T +V LL R
Sbjct: 541 DRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGR 600

Query: 446 VGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSYVLL 477
            G+ +                           ++N    + +  K+L ++P   ++YVLL
Sbjct: 601 AGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLL 660

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKL 535
           SN+YAA G   +VA  R  M+   +KK+ G S++E+ G VH F  G   H   + I++ L
Sbjct: 661 SNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMRIINAML 720

Query: 536 EDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
           E +   A  +GY+P    VLH++ +EEK   L  HSE+LALA+GL  T PG  I+I+K L
Sbjct: 721 EWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPIRIMKNL 780

Query: 595 TICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             C DCH++ K  SKI QREI++RD  RFH+F++G CSC DYW
Sbjct: 781 RSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 192/464 (41%), Gaps = 53/464 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N   F  L++G A    F+  +  F  + R     N      + K + +
Sbjct: 101 ARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVT 160

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +    L  G+H    K G + +AFV   L D Y   G    A  VFD    K+     + 
Sbjct: 161 MDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKD----AVT 216

Query: 202 WNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV--------------------- 234
           W  +++  S+      A+  F      G  P   V +                       
Sbjct: 217 WTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSV 276

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       +L+D + + GD++ A  +FE +P   V+ W+ +I+ ++Q+ + E+A  
Sbjct: 277 KTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFE 336

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MF +M+ + V  N+F++   L ACA +  LE G ++HN      +  +  +G AL+DMYA
Sbjct: 337 MFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYA 396

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KC N+E +  +F   ++ + ++W  +I G    G  E A+  F +M  +        F +
Sbjct: 397 KCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSS 456

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
           +L AC  +  +K A+           IE S   + T+V N L          +++   F 
Sbjct: 457 VLRACANTSSIKHAVQIHS------LIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFE 510

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            +++      +S +   + YA  GR  +   +   M +  IK +
Sbjct: 511 SIVECDVVSWNSII---SAYALHGRATNALELFDRMNKSDIKAN 551



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 132/301 (43%), Gaps = 45/301 (14%)

Query: 148 GRGLHCLIVKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           GR +H  +V+ G   + D F    L + Y +LG    A ++FD  PE+N+   V     L
Sbjct: 64  GRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFV----TL 119

Query: 206 INGCSKIGYLRKAVELFGMMPK-------------------------------------- 227
           + G +  G   +A+ELF  + +                                      
Sbjct: 120 MQGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGH 179

Query: 228 -KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            +N     +LID +   G +  A  +F+ +  K  V+WTAM++ +S+N   E AL  F +
Sbjct: 180 DRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSK 239

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M   G + N F + SAL A   + +   G  +H       +  +  +G AL+DMYAKCG+
Sbjct: 240 MRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGD 299

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           IE A  +F      D++ W+ +I   A   + EQA + F +MM S   P+      +L A
Sbjct: 300 IEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQA 359

Query: 407 C 407
           C
Sbjct: 360 C 360


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 179/547 (32%), Positives = 283/547 (51%), Gaps = 71/547 (12%)

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
           RPN +T   +  +   L  L  GR +H  +V++G+  + FV   L +MY      R A  
Sbjct: 176 RPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQL 235

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
           VFD                                    M +++  SW  LI  +    +
Sbjct: 236 VFDS-----------------------------------MSRRDTVSWNVLITAYFLNKE 260

Query: 246 LKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
            +K   +F +M  +GV     SW A+I G  QNG  EKAL +  +M ++G + N  T+ S
Sbjct: 261 CEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITS 320

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L AC  + +L  G ++H YI  + F       TALV MYAKCG++E +  VF    ++D
Sbjct: 321 VLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRD 380

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
            ++W  MI   ++HG  E+A+  F++M+ SG  P+   F  +L+ C +S  V   L  FD
Sbjct: 381 TVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFD 440

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------- 458
           SM  D+ +EP   HH+ +V++LSR G+  + Y+  +                        
Sbjct: 441 SMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNV 500

Query: 459 -----SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
                +  +L +++  +P +YVLLSNI  +   W + +  R LM+ R + K+PG S+I+V
Sbjct: 501 ELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQV 560

Query: 514 NGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHS 570
              VH F  G   +  + EI+  L+ +    R  GY+P T++VL ++ +EEKEE L  HS
Sbjct: 561 RNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHS 620

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           EKLA+AFG++     ++I++ K L ICGDCH+ +K+ +KI   +I++RD+ RFH+F+DG 
Sbjct: 621 EKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGL 680

Query: 630 CSCRDYW 636
           CSC+D+W
Sbjct: 681 CSCQDFW 687



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 127/270 (47%), Gaps = 12/270 (4%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LID + +    + A  +FE MP + V+SWT+M + +   G   +AL  F +M   G R 
Sbjct: 118 ALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERP 177

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  TV S L AC  +  L++G  VH ++  N  G    + +ALV+MYA C +I  A LVF
Sbjct: 178 NSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVF 237

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                +D ++W  +I    ++   E+ +  F +MM  G   +   + A++  C  +G+ +
Sbjct: 238 DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVV---VNLLS-RVGQDSQGYQNSQNSFTKLLQLKPKH 470
            AL     M+   F    +   +V+    NL S R G+   GY      F  L       
Sbjct: 298 KALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDL------- 350

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
            ++   L  +YA  G  +   RV ++M +R
Sbjct: 351 -TTTTALVFMYAKCGDLELSRRVFSMMTKR 379



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 87/175 (49%), Gaps = 1/175 (0%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-V 292
           +  I  +   GDL++A  LF+++P+  + +WT +I+  +++G + +A+  +        V
Sbjct: 15  LKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCV 74

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             +   ++S   ACA +  +    RVH       F     +G AL+DMY KC   E A L
Sbjct: 75  EPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARL 134

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           VF     +D+++WT+M       G   +A+  F+KM  +G  P+     +IL AC
Sbjct: 135 VFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPAC 189


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 199/641 (31%), Positives = 322/641 (50%), Gaps = 77/641 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   L+   S +  +D A  +F     K++  +N +I G  +N +    +     M    
Sbjct: 158 VAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG 217

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           V+ + +T   +    A    +  G  +H  ++K G++ D FV   L +MY + G+ + A 
Sbjct: 218 VKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQ 277

Query: 185 KVFDETPEKNKSESVLLWNVLI------NGCSKIGYLRKAVELFGMMPK----------- 227
            VFD+   ++    ++ WN +I      N  S      K ++L G+ P            
Sbjct: 278 MVFDQMEVRD----LVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIF 333

Query: 228 -----------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                  K+V    +L++ + + G +  A  +F+Q+P K  +SW
Sbjct: 334 SQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISW 393

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
             ++ G++QNG A +A+  +  M +      N  T VS + A + VGAL+ G+++H  + 
Sbjct: 394 NTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            N   L   + T L+D+Y KCG +E A  +F E      + W A+I  L IHGR E+A+Q
Sbjct: 454 KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQ 513

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            FK M+    + D   F+++L+AC +SG V      FD M+ +Y I+PS+KH+  +V+LL
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLL 573

Query: 444 SRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYV 475
            R G   + Y+  +N                            +  +LL++  ++   YV
Sbjct: 574 GRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYV 633

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
           LLSNIYA   +W+ V +VR+L + R ++K PGWS + V      F  G   H    EI+ 
Sbjct: 634 LLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYK 693

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
           +L+ + A  +  GY+P   +V  +I+E EKE+ L  HSE+LA+AFG+I T P + I+I K
Sbjct: 694 ELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFK 753

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSC 632
            L +CGDCH+  KY S+IS+REIV+RD+ RFH+FKDG CSC
Sbjct: 754 NLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 203/463 (43%), Gaps = 63/463 (13%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           +L +S  +    +++HA +++     +  ++T+LI+    H  I  + S FD+   KN+ 
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIF 86

Query: 96  IFNVLIRGLAENSHFQ---SCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGL 151
            +N +I        +    +C++    M     +RP+  T+P + K+  SL     G+ +
Sbjct: 87  SWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKV 143

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HC + K G E D FV   L  +Y + G    A KVF + P K+       WN +I+G  +
Sbjct: 144 HCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS----WNAMISGFCQ 199

Query: 212 IGYLRKAVELFGMMPKK-------NVASWV------------------------------ 234
            G    A+ +   M  +        VAS +                              
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +LI+ + + G L+ A  +F+QM  + +VSW ++I  + QN +   AL  F  M   G+
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAAS 351
           R +  TVVS  S  +++        +  ++   ++  K   IG ALV+MYAK G +  A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYS 410
            VF +   KD ++W  ++ G   +G   +AI  +  M     T P+   +++I+ A  + 
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 411 GQVKLALNFF-----DSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           G ++  +        +S+  D F+       T +++L  + G+
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVA------TCLIDLYGKCGR 476



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 174/397 (43%), Gaps = 49/397 (12%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + IT   I+ +   S+       IH  ++ H L +   ++  LI+  S    +  A  +F
Sbjct: 221 DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    ++L  +N +I    +N+   + +  F  M    +RP+ LT   ++   + LS   
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQR 340

Query: 147 LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           + R +   +++   ++ D  +   L +MY +LG    A  VFD+ P K+     + WN L
Sbjct: 341 ISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD----TISWNTL 396

Query: 206 INGCSKIGYLRKAVELFGMMPK-----KNVASWVS------------------------- 235
           + G ++ G   +A++ + MM +      N  +WVS                         
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                     LID + + G L+ A  LF ++P    V W A+I     +G  E+AL +F 
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAK 343
            ML   V+A+  T VS LSAC+  G ++ G +  + +   ++G+K ++     +VD+  +
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQ-KEYGIKPSLKHYGCMVDLLGR 575

Query: 344 CGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            G +E A  LV     + D   W A++    I+G  E
Sbjct: 576 AGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAE 612



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 184/430 (42%), Gaps = 59/430 (13%)

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + LH L++  G   +  +   L ++YV  G    +   FD   +KN    +  WN +I+ 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN----IFSWNSIISA 94

Query: 209 CSKIGYLRKAV----ELFGMMPKKNV-----------ASWVSLIDG-------------- 239
             + G   +A+    +LF M    ++            + VSL+DG              
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFED 154

Query: 240 -----------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                      + R G L  A ++F  MP K V SW AMI+GF QNG A  AL +  +M 
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             GV+ +  TV S L  CA+   +  GV +H ++  +       +  AL++MY+K G ++
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A +VF + + +DL++W ++I     +     A+++FK M   G  PD    +++ +   
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
                +++ +    +    +++  V     +VN+ +++     GY N  +  T   QL  
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL-----GYMNCAH--TVFDQLPR 387

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQ--RRSIKKDPGW-SYIEVNGHVHRFEAGGH 525
           K   S+  L   Y   G   +      +M+  R +I     W S I    HV   + G  
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQG-- 445

Query: 526 KLAKEIHSKL 535
               +IH+KL
Sbjct: 446 ---MKIHAKL 452


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 194/566 (34%), Positives = 303/566 (53%), Gaps = 87/566 (15%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ +HCL++K G E+D FV   L  MY + G    A K+FD+ P +++      WN +I+
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGS----WNAMIS 68

Query: 208 G-----------------------------------CSKIGYL--RKAVELFGMMPKKNV 230
           G                                   C+++G +   K + L+ +      
Sbjct: 69  GYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEF 128

Query: 231 ASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
             +VS  LI+ + + G L  A ++F  +  K VVSW  +I G++QNG A +A+ ++  M 
Sbjct: 129 ELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLME 187

Query: 289 D-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
           +   +  N  T VS L A + VGAL+ G+R+H  +  N       +GT L+DMY KCG +
Sbjct: 188 EHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKL 247

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + A  +F +   K+ + W AMI    +HG  E+A++ F++M     +PD   F+++L+AC
Sbjct: 248 DDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSAC 307

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467
            +SG V  A   F+ M  +Y I+PS+KH+  +V+L  R G+    +     +F K + ++
Sbjct: 308 SHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAF-----NFIKKMPIQ 362

Query: 468 P---------------------KHPSS------------YVLLSNIYAAEGRWKDVARVR 494
           P                     KH S             YVLLSNIYA  G+W+ V  VR
Sbjct: 363 PDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVR 422

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
           +L + R ++K+PGWS I +N  V  F  G   H   +EI+ +L D+ +  +  GY+P   
Sbjct: 423 SLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIGYVPDFC 482

Query: 553 WVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
           +VL +++E EKE  L  HSE+LA+A+G+I T+P T I+I K L +CGDCH++ K+ S I+
Sbjct: 483 FVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTKFISIIT 542

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +REI++RD +RFH+FK GTCSC DYW
Sbjct: 543 EREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 48/217 (22%), Positives = 83/217 (38%), Gaps = 12/217 (5%)

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G L  G ++H  +    F     +  +LV MY++ G +  A  +F +   +D  +W AMI
Sbjct: 8   GDLLDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMI 67

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G   +G   +A+    +M   G + D     ++L  C   G + L+          + +
Sbjct: 68  SGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDI-LSGKLIHLYVIKHGL 126

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
           E  +     ++N+ ++ G        S     K+  L  K   S+  L   YA  G   +
Sbjct: 127 EFELFVSNALINMYAKFG--------SLGHAQKVFGLLIKDVVSWNTLITGYAQNGLASE 178

Query: 490 VARVRTLMQRRS--IKKDPGW-SYIEVNGHVHRFEAG 523
              V  LM+     I     W S +    HV   + G
Sbjct: 179 AIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQG 215



 Score = 42.0 bits (97), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 10/249 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   I+       + +Q  +IH Q+I + L++   + T LI        +D A+S+F
Sbjct: 195 NQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLF 254

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                KN   +N +I     +   +  +  F  M    V+P+ +T+  +  + +   L+S
Sbjct: 255 YQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLSACSHSGLVS 314

Query: 147 LGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             +    ++ +  G++        + D++ + G+   AF    + P +  + +   W  L
Sbjct: 315 DAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDASA---WGAL 371

Query: 206 INGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV- 261
           +N C   G +   + A E    +  +NV  +V L + +   G  +   ++     ++G+ 
Sbjct: 372 LNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLR 431

Query: 262 --VSWTAMI 268
               W+++I
Sbjct: 432 KNPGWSSII 440


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 194/666 (29%), Positives = 337/666 (50%), Gaps = 83/666 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA  +         +   LI        +D A S+FD    +N+  +  L+ G  +  
Sbjct: 25  QVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEG 84

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
           + +  ++    M    V+PN  T+    K+  +L ++  G  +H + VKSG E+ + V  
Sbjct: 85  NAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGN 144

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------ 222
              DMY + G+   A +VF++ P +N    ++ WN +I G +  G  RK++ LF      
Sbjct: 145 ATIDMYSKCGRIGMAEQVFNKMPFRN----LVSWNAMIAGHTHEGNGRKSLVLFQRMQGQ 200

Query: 223 GMMPK------------------------------------KNVASWVSLIDGFMRKGDL 246
           G +P                                     +N+ +  +++D + + G L
Sbjct: 201 GEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIA-SAIVDLYAKCGYL 259

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            +A ++F+++ +K ++SW+A+I GF+Q G   +A+ +F Q+ ++    + F +   +   
Sbjct: 260 FEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVF 319

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A +  +E G ++H YI     GL  ++  +++DMY KCG  E A  +F E + +++++WT
Sbjct: 320 ADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWT 379

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
            MI G   HG  E+AI  F +M   G E D   +LA+L+AC +SG ++ +  +F  +  +
Sbjct: 380 VMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNN 439

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------------------ 462
           + ++P+++H+  +V++L R GQ  +     +N   K                        
Sbjct: 440 HQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGRE 499

Query: 463 ----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
               L ++   +P +YV++SNIYA  G WK+  RVR L++ + +KK+ G S++E+N  +H
Sbjct: 500 VGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIH 559

Query: 519 RFEAGG--HKLAKEIHSKLEDIMAGAREQ-GYMPGTEWVLHNIKEE-KEEALGCHSEKLA 574
            F  G   H L ++IH  L+++    +E+ GY  G  + LH+++EE KEE L  HSEKLA
Sbjct: 560 FFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLA 619

Query: 575 LAFGLI---QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           +   L+       G  I++ K L +CGDCH  +K  SKI ++  V+RD  RFH F+DG C
Sbjct: 620 IGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLC 679

Query: 631 SCRDYW 636
           SC DYW
Sbjct: 680 SCGDYW 685



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L  C+K G  + G++VH       FG    +   L+DMY KC  ++ A  VF    E+++
Sbjct: 11  LRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNV 70

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
           ++WTA++ G    G  + ++    +M YSG +P+   F   L AC   G V+
Sbjct: 71  VSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVE 122


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 166/425 (39%), Positives = 256/425 (60%), Gaps = 32/425 (7%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +  A ++F++MP+   V+W+AMI G+++ G + +A+A+F +M  A V  ++ T+VS L
Sbjct: 182 GGINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSML 241

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SAC  +GALE G  +  YI  ++      +  AL+DM+AKCG+I  A  +F    EK ++
Sbjct: 242 SACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIV 301

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +WT++I G+A+HGR ++A   F++M  SG  PD   F+ +L+AC +SG V+    +F SM
Sbjct: 302 SWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSM 361

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------------------- 458
              Y + P ++H+  +V++  R G   +  +  +N                         
Sbjct: 362 MKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKL 421

Query: 459 --SFTKLL-QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
               TKLL + +P H S+YVLLSNIYA    W+   ++R +M+ + +KK PG + IE++ 
Sbjct: 422 GEKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDN 481

Query: 516 HVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEK 572
            ++ F AG   HK  KEI+  ++++    ++ GY P T  VL +I EE KE++L  HSEK
Sbjct: 482 EIYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEK 541

Query: 573 LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631
           LA+AFGL++T PGT I+IVK L +C DCHS  K+ SKI  REI++RD  RFH+FK G CS
Sbjct: 542 LAIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCS 601

Query: 632 CRDYW 636
           C D+W
Sbjct: 602 CGDFW 606


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 206/692 (29%), Positives = 341/692 (49%), Gaps = 98/692 (14%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           + L+H    T  L   R +H  +      A   + T L+++     +   A  +FD    
Sbjct: 82  VPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPE 141

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N+  +  L+ G   NS     +  FV ML +   P+  T      +  +   + LG+ +
Sbjct: 142 RNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQV 201

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H   +K G E    +   L  +Y +LG    A + F   PEKN    V+ W  +I+ C++
Sbjct: 202 HGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKN----VITWTTMISACAE 257

Query: 212 IGYLRKAVELF----------GMMPKKNVASWVSLIDG---------------------- 239
                + VEL           G+MP +   + V  + G                      
Sbjct: 258 D---EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCET 314

Query: 240 -----------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK--------- 279
                      ++RKG+  +A  LFEQM +  +++W AMI+G++Q  ++ K         
Sbjct: 315 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRG 374

Query: 280 --ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
             AL +F  +  + ++ + FT  S LS C+ + ALE G ++H     + F     + +AL
Sbjct: 375 FQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 434

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           V+MY KCG I+ A+  F E   +  +TWT+MI G + HG+ ++AIQ F++M  +G  P+ 
Sbjct: 435 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 494

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--- 454
             F+++L+AC Y+G V+ A ++FD M+ +Y IEP V H+  ++++  R+G+    +    
Sbjct: 495 ITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIK 554

Query: 455 ----------------------NSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                                 N + +F    KLL+LKPK   +Y+LL N+Y +  RW+D
Sbjct: 555 RTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQD 614

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGY 547
           VARVR LM++  +      S+I +   V+ F A    H  A E++  LE+++  A+  GY
Sbjct: 615 VARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGY 674

Query: 548 MPGTEWVLHNIKEEKEEALGC---HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
            P     L + +++++ A G    HSE+LA+A GL+QT PG T+++ K +T+C DCHS +
Sbjct: 675 EPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSI 734

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
           K  S +  REI++RD+ R H FKDG CSC D+
Sbjct: 735 KLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 58/129 (44%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           ML  G        V  L  C + G+L A   VH +++         + T+LV+ Y +C  
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSA 128

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
              A  +F    E++++TWTA++ G  ++ +    ++ F +M+  G  P      A L A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 407 CWYSGQVKL 415
           C  S  V L
Sbjct: 189 CLASCDVDL 197


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 206/616 (33%), Positives = 307/616 (49%), Gaps = 82/616 (13%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS-LGRGLHCLI 155
           +   I G A++      +S F  MLRL +RPN  T+P   K+ AS    S +G  +H L 
Sbjct: 85  YTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLA 144

Query: 156 VKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-------- 206
           ++ G +  D FV     DMY + G+ + A  +F E P +N    V+ WN ++        
Sbjct: 145 IRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRN----VVAWNAVMTNAVLDGR 200

Query: 207 ---------------------------NGCSKIGYLRKAVELFGMMPK----KNVASWVS 235
                                      N C+   YL    +  G + K     +V+   S
Sbjct: 201 PLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNS 260

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           ++D + +     KA  +F+ M  +  VSW +M+  ++QNG  E+A A +     +G    
Sbjct: 261 MVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPT 320

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           DF V SAL+ CA +  L  G  +H     SC D  +   + +ALVDMY KCG +E A  +
Sbjct: 321 DFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANI--FVASALVDMYGKCGCVEDAEQI 378

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQ 412
           F ET +++L+TW AMI G A  G  + A+  F  M+ SG T P+    + ++T+C   G 
Sbjct: 379 FYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGL 438

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-------------- 458
            K     F++MR  + IEP  +H+  VV+LL R G + Q Y+  Q               
Sbjct: 439 TKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALL 498

Query: 459 --------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                         +  KL +L P+   ++VLLSN++A+ GRW +   +R  M+   IKK
Sbjct: 499 GACKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKK 558

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEK 562
           DPG S++     VH F A    H++  EI + L  +    +  GYMP T++ L++++EE+
Sbjct: 559 DPGCSWVTWKNVVHVFRAKDTKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEE 618

Query: 563 EEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-T 620
           +E+ +  HSEKLALAFGLI   PG  I+I+K L IC DCH   K+ S I  REI++RD  
Sbjct: 619 KESEVFQHSEKLALAFGLICIPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNN 678

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FK   CSC DYW
Sbjct: 679 RFHHFKQYQCSCGDYW 694



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/168 (30%), Positives = 84/168 (50%), Gaps = 14/168 (8%)

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA-G 315
           P   VVS+TA I+G +Q+G    AL+ F  ML  G+R NDFT  SA  A A        G
Sbjct: 78  PHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIG 137

Query: 316 VRVHN------YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            ++H+      Y+  + F     +  A +DMY K G ++ A  +FGE   ++++ W A++
Sbjct: 138 PQIHSLAIRFGYLPVDPF-----VSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVM 192

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
               + GR  + I+ +  +  +G  P+     A   AC  +G + L+L
Sbjct: 193 TNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNAC--AGAMYLSL 238



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A ++FD    +N   +  ++   A+N   +   + ++   R    P          + A 
Sbjct: 274 ARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAG 333

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L LGR LH + V+S ++ + FV   L DMY + G    A ++F ETP++N    ++ 
Sbjct: 334 LLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRN----LVT 389

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMRKGDLKKAGELFEQM 256
           WN +I G + IG  + A+ +F  M +      N  + V++I    R G  K   ELFE M
Sbjct: 390 WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETM 449

Query: 257 PEK 259
            E+
Sbjct: 450 RER 452


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/366 (44%), Positives = 227/366 (62%), Gaps = 32/366 (8%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L ACA V ALE G +VH  I    F L  ++   LVDMY KCG IE A  VF +  E D+
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDV 64

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
            +W AMI GLA HG  ++A+  F++M+ +G +P+   F+ +L+ C ++G V    N+FDS
Sbjct: 65  ASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFDS 124

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN------------------------- 455
           M  D+ I P  +H++ +V+L  R G   ++  + N                         
Sbjct: 125 MTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGNIE 184

Query: 456 -SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
            ++ +  +L++L P++P +YVLLSNIYAA GRW D  +VR +M+ RS+KK+PG S+IEV 
Sbjct: 185 LAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIEVQ 244

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCHSE 571
             VH F  G   H   +EI+  LE +    +  GY+P T +VLH+++EE++E  LG HSE
Sbjct: 245 NKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHHSE 304

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
           KLA+AFG+I T PGTTI++VK L +CGDCH+  K+ S+I  REIVLRDT RFH+FKDG C
Sbjct: 305 KLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDGQC 364

Query: 631 SCRDYW 636
           SC DYW
Sbjct: 365 SCGDYW 370



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 103/204 (50%), Gaps = 8/204 (3%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVS----LIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  C+ +  L +  ++   + K      VS    L+D + + G ++ A E+F ++ E  
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           V SW AMI+G +Q+G  ++A+ +F QML  GV+ N  T V  LS C+  G ++ G    +
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 321 YISCNDFGL--KGAIGTALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
            ++  D G+  K    + +VD++ + G + EA + +     E +   W +++    +HG 
Sbjct: 124 SMT-RDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFL 401
            E A +  ++++    E  GT  L
Sbjct: 183 IELAERAVEQLIELTPENPGTYVL 206



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 103/246 (41%), Gaps = 14/246 (5%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I+    S  + +Q +Q+HA II         ++  L+        I+ A  +F      +
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG-LH 152
           +  +N +I GLA++   +  +  F  ML+  V+PN++T+  V    +   L+  GR    
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGC-- 209
            +    G+   A     + D++ + G    A    ++ P E N S    +W  L+  C  
Sbjct: 124 SMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNAS----VWGSLLGACRV 179

Query: 210 -SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV-----VS 263
              I    +AVE    +  +N  ++V L + +   G    AG++ + M ++ V      S
Sbjct: 180 HGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCS 239

Query: 264 WTAMIN 269
           W  + N
Sbjct: 240 WIEVQN 245


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 210/657 (31%), Positives = 326/657 (49%), Gaps = 106/657 (16%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N   F  LI+G AE+  F   I  FV + R     N   +  + K + S
Sbjct: 92  ASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVS 151

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
                LG G+H  I K G E +AFV   L D Y   G+   A +VFD    K+    ++ 
Sbjct: 152 TDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKD----MVS 207

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----KKNVASW------------------------ 233
           W  ++   ++    ++A++LF  M     K N  ++                        
Sbjct: 208 WTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCAL 267

Query: 234 -----------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                      V+L+D + + GD+  A   FE++P+K V+ W+ MI  ++Q+ ++++A+ 
Sbjct: 268 KSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVE 327

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           MFFQM  A V  N FT  S L ACA +  L  G ++H ++          +  AL+D+YA
Sbjct: 328 MFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYA 387

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM----------YSG 392
           KCG +E +  +F E+  ++ +TW  +I G    G  E+A++ F  M+          YS 
Sbjct: 388 KCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSS 447

Query: 393 ---------------------TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
                                 +PD   F+ +L+AC  +G +     +F SM  D+ IEP
Sbjct: 448 ALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEP 507

Query: 432 SVKHHTVVVNLLSRVGQ--------DSQGYQNS--------------------QNSFTKL 463
            ++H+T +V LL R G         D   +Q S                    + S  ++
Sbjct: 508 CIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRV 567

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           L+++P+  +++VLLSN+YA   RW +VA VR  M+R+ +KK+PG S+IE  G VH F  G
Sbjct: 568 LEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVG 627

Query: 524 --GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLI 580
              H   + I+  LE +    ++ GY+P    VL +++ EEKE  L  HSE+LAL+FG+I
Sbjct: 628 DTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGII 687

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +T  G+ I+I+K L IC DCH+ +K  SK+ QREIV+RD  RFH+F++G CSC DYW
Sbjct: 688 RTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 744



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 37/298 (12%)

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---------- 195
           S G+GLHC I+K G   D F    L +MYV+      A K+FDE PE+N           
Sbjct: 55  SRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGY 114

Query: 196 SESV--------------------------LLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           +ESV                          +L  ++   C ++G+   A  +F +  + N
Sbjct: 115 AESVRFLEAIELFVRLHREGHELNPFVFTTILKLLVSTDCGELGWGIHAC-IFKLGHESN 173

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +LID +   G +  A E+F+ +  K +VSWT M+  F++N   ++AL +F QM  
Sbjct: 174 AFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRM 233

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G + N+FT  S   AC  + A + G  VH     + + L   +G AL+D+Y K G+I+ 
Sbjct: 234 VGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDD 293

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A   F E  +KD++ W+ MI   A   + ++A++ F +M  +   P+   F ++L AC
Sbjct: 294 ARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQAC 351



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 97/193 (50%), Gaps = 7/193 (3%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           ++ +W  L++ +++   L  A +LF++MPE+  +S+  +I G++++    +A+ +F ++ 
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLH 131

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G   N F   + L         E G  +H  I          +GTAL+D Y+ CG ++
Sbjct: 132 REGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVD 191

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF     KD+++WT M+   A +  +++A++ F +M   G +P+   F ++  AC 
Sbjct: 192 VAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC- 250

Query: 409 YSGQVKLALNFFD 421
                 L L  FD
Sbjct: 251 ------LGLEAFD 257


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 210/683 (30%), Positives = 342/683 (50%), Gaps = 99/683 (14%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++ +  +     +IH   +         +   LI   S +K++  A  +FD    +++ 
Sbjct: 158 SVLKACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMG 217

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS-------LG 148
            +N +I G  ++ + +  ++     L   +R           SV  +SLLS         
Sbjct: 218 SWNAMISGYCQSGNAKEALT-----LSNGLR--------AMDSVTVVSLLSACTEAGDFN 264

Query: 149 RG--LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           RG  +H   +K G+E + FV   L D+Y + G+ R   KVFD    ++    ++ WN +I
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRD----LISWNSII 320

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSL---------------IDGF-MRKG-- 244
                     +A+ LF  M     + +  + +SL               + GF +RKG  
Sbjct: 321 KAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWF 380

Query: 245 --DL----------------KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
             D+                  A  +F  +P   V+SW  +I+G++QNG A +A+ M+  
Sbjct: 381 LEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNI 440

Query: 287 MLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           M + G + AN  T VS L AC++ GAL  G+++H  +  N   L   + T+L DMY KCG
Sbjct: 441 MEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLADMYGKCG 500

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +E A  +F +    + + W  +I     HG  E+A+  FK+M+  G +PD   F+ +L+
Sbjct: 501 RLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 560

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQ 457
           AC +SG V      F+ M+ DY I PS+KH+  +V++  R GQ         S   Q   
Sbjct: 561 ACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDA 620

Query: 458 NSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
           + +  LL                    +++P+H   +VLLSN+YA+ G+W+ V  +R++ 
Sbjct: 621 SIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIA 680

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
             + ++K PGWS +EV+  V  F  G   H + +E++ +L  + A  +  GY+P   +VL
Sbjct: 681 HGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHRFVL 740

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
            ++++ EKE  L  HSE+LA+AF LI T   TTI+I K L +CGDCHS+ K+ SKI++RE
Sbjct: 741 QDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKITERE 800

Query: 615 IVLRDT-RFHYFKDGTCSCRDYW 636
           I++RD+ RFH+FK+G CSC DYW
Sbjct: 801 IIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/474 (21%), Positives = 211/474 (44%), Gaps = 52/474 (10%)

Query: 3   GHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFAS 62
           G V    + +     +   +   S  I + H  +L     + +  + +HA++++     +
Sbjct: 28  GSVIREFSASANALQDCWKNGNESKEIDDVH--TLFRYCTNLQSAKCLHARLVVSKQIQN 85

Query: 63  SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF-VFML 121
             I+ +L++      ++  A   FDH   ++++ +N++I G     +    I  F +FML
Sbjct: 86  VCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFML 145

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
              + P+  T+P V K+  ++     G  +HCL +K G  +D +V   L  +Y +     
Sbjct: 146 SSGLTPDYRTFPSVLKACRTVID---GNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVG 202

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---FGMMPKKNVASWVS--- 235
            A  +FDE P ++       WN +I+G  + G  ++A+ L      M    V S +S   
Sbjct: 203 NARILFDEMPVRDMGS----WNAMISGYCQSGNAKEALTLSNGLRAMDSVTVVSLLSACT 258

Query: 236 -----------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                        LID +   G L+   ++F++M  + ++SW +
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           +I  +  N +  +A+++F +M  + ++ +  T++S  S  +++G + A   V  +     
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378

Query: 327 FGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           + L+   IG A+V MYAK G +++A  VF      D+++W  +I G A +G   +AI+ +
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMY 438

Query: 386 KKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFF-----DSMRFDYFIEPSV 433
             M   G    +   ++++L AC  +G ++  +        + +  D F+  S+
Sbjct: 439 NIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSL 492


>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 619

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 196/610 (32%), Positives = 301/610 (49%), Gaps = 74/610 (12%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +  + KP + + E   ISL+ +  +  +L QI AQI+ H L  +  +T   I++ +    
Sbjct: 10  VNQTSKPLHRVVEDKFISLLRTCGTCVRLHQIQAQIVTHGLEGNDYVTPSFITACARLGG 69

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  +FD     N   +N + RG A+ +     +  F  M R    PN  T+P V KS
Sbjct: 70  IRRARRVFDKTAQPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKS 129

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT--RGAFKVFDETPEKN-- 194
            A+ +    G  +HC++ K G + + FV   L  MY   G      A+KVF E  +KN  
Sbjct: 130 CATANAAKEGEEVHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVF 189

Query: 195 -------------------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
                                        V+LWNV+++G  ++G +  A ELF  MP ++
Sbjct: 190 AWTAIVAAHVACRDMVSARRLFDLAPQRDVVLWNVVVSGYIELGDMVAARELFDRMPDRD 249

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML- 288
           V SW +++ G+   G+++   +LFE+MP + V SW  +I G+ +NG  ++AL  F +ML 
Sbjct: 250 VMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLIGGYVRNGLFKEALECFKRMLV 309

Query: 289 ----------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--IGTA 336
                     D  V  ND+TVV+ L+AC+++G LE G  VH Y      G KG   +G A
Sbjct: 310 LVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKWVHVY--AESIGYKGNLFVGNA 367

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+DMYAKCG IE A  VF     KD++TW  +I GLA+HG    A+  F++M  +G  PD
Sbjct: 368 LIDMYAKCGVIEKALDVFDGLDVKDIITWNTIINGLAMHGHVADALSLFERMKRAGERPD 427

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---- 452
           G  F+ IL+AC + G V+  L  F SM  DY I P ++H+  +V+LL R G   +     
Sbjct: 428 GVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIV 487

Query: 453 ---------------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                                Y+N   ++ +  +L++L+P +P ++V++SNIY   GR +
Sbjct: 488 RKMPMEPDAVIWAALLGACRMYKNVEMAELALQRLIELEPNNPGNFVMVSNIYKDLGRSQ 547

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQG 546
           DVAR++  M+    +K PG S I  N  +  F +    H     I+  L+ +    R  G
Sbjct: 548 DVARLKVAMRDTGFRKVPGCSVIGCNDSMVEFYSLDERHPETDSIYRALQGLTILLRSHG 607

Query: 547 YMPGTEWVLH 556
           Y+P    V H
Sbjct: 608 YVPNLVDVAH 617


>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 587

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 181/464 (39%), Positives = 269/464 (57%), Gaps = 53/464 (11%)

Query: 219 VELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           V+L  ++ +  VA+ V    +L+D + + GDL  A ++F++M  + V +W +++ G +Q 
Sbjct: 131 VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG 190

Query: 275 GEAEKALAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            E   ALA+F      FQ L +    N+ T+V+ALSACA++G L+ G+ VH +     FG
Sbjct: 191 TEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEF--AKRFG 248

Query: 329 LKG--AIGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQY 384
           L     +  +L+DMY+KCG++  A  VF   K +D  L+++ A I   ++HG    A++ 
Sbjct: 249 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRL 308

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M  +  EPDG  +LA+L  C +SG V   L  F+SMR    + P++KH+  +V+LL 
Sbjct: 309 FDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLG 363

Query: 445 RVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVL 476
           R G+ ++ Y                              ++ +  KL +L       YVL
Sbjct: 364 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 423

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           LSN+YA++ RW DV RVR  M+   ++K PG+SY E++G +H+F  G   H   +EI+  
Sbjct: 424 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 483

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LEDI++   E GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG T++++K 
Sbjct: 484 LEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKN 543

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L ICGDCH + K  SK   R IV+RD  RFH F+DG CSCRDYW
Sbjct: 544 LRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 587


>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
          Length = 485

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 172/469 (36%), Positives = 276/469 (58%), Gaps = 37/469 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           L+  C+++G L +   L     +    +N++   +++D + +  D++ A E+F ++ EK 
Sbjct: 17  LVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVFNRIREKD 76

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           V+SWT+M++G +++G  +++LA+F +M    +  ++ T+V  LSACA+ GAL+ G  +H 
Sbjct: 77  VLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSACAQTGALDQGKYIHL 136

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            I   +      + TALVDMYAKCG+I+ A  VF   + +++ TW AMI GLA+HG  E 
Sbjct: 137 LIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNAMIGGLAMHGHGED 196

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI  F +M      PD   F+A+L AC ++G V   L  F +M+  + IEP ++H+  VV
Sbjct: 197 AISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKFQIEPRMEHYGCVV 256

Query: 441 NLLSR--------------------------VGQDSQG--YQNSQNSFTKLLQLKPKHPS 472
           +LL R                          +G    G  +  ++    ++++L+P    
Sbjct: 257 DLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKIXRRVIELEPDSCG 316

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            YV+LSN+YA   +W    ++R  M+ + I+K PG S+IE+NG +H+F AG   H   ++
Sbjct: 317 RYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQ 376

Query: 531 IHSKLEDIMAGAR-EQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTI 588
           I++ +E++      + G++PGT  VL +I+EE KE +L  HSEKLA+A GLI T  G+ I
Sbjct: 377 IYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSEKLAIALGLISTPSGSPI 436

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +IVK L +C DCHS +K  SK+  REIV RD +RFH+FK+G+CSC D+W
Sbjct: 437 RIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSCSCMDFW 485



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/316 (21%), Positives = 141/316 (44%), Gaps = 51/316 (16%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           ++RP+ +T   +  + A L  L  G+ LH    + G++ +  V   + DMY +      A
Sbjct: 6   NLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESA 65

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK--------- 228
            +VF+   EK+    VL W  +++G +K GY ++++ LF  M      P +         
Sbjct: 66  QEVFNRIREKD----VLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLSA 121

Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                   ++    +L+D + + G +  A ++F +M  + V +W
Sbjct: 122 CAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTW 181

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            AMI G + +G  E A+++F QM    +  +D T ++ L AC+  G ++ G+ +   +  
Sbjct: 182 NAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMK- 240

Query: 325 NDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQ 380
           N F ++  +     +VD+  +   ++ A L F E    + + + W  ++      G ++ 
Sbjct: 241 NKFQIEPRMEHYGCVVDLLCRARKVDDA-LAFIENMPIKANSVLWATLLGACRSGGHFDL 299

Query: 381 AIQYFKKMMYSGTEPD 396
           A +  ++++    EPD
Sbjct: 300 AEKIXRRVIE--LEPD 313



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/250 (22%), Positives = 108/250 (43%), Gaps = 16/250 (6%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            I+ A  +F+    K++  +  ++ GLA++ +FQ  ++ F  M    + P+ +T   V  
Sbjct: 61  DIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVGVLS 120

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A    L  G+ +H LI K  +  D  +   L DMY + G    A +VF     +N   
Sbjct: 121 ACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRN--- 177

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELF 253
            V  WN +I G +  G+   A+ LF  M    +     ++++L+      G + +   +F
Sbjct: 178 -VFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAMF 236

Query: 254 EQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           + M  K  +      +  +++   +  + + ALA    M    ++AN     + L AC  
Sbjct: 237 QAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENM---PIKANSVLWATLLGACRS 293

Query: 309 VGALEAGVRV 318
            G  +   ++
Sbjct: 294 GGHFDLAEKI 303



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 23/283 (8%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + IT   ++S    + +  Q + IH  I    +     + T L+   +   SID AL +F
Sbjct: 111 DEITLVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVF 170

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                +N+  +N +I GLA + H +  IS F  M    + P+ +T+  +  + +   L+ 
Sbjct: 171 RRMRVRNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVD 230

Query: 147 LGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G  +   +  K  +E        + D+  +  K   A    +  P K  S   +LW  L
Sbjct: 231 EGLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANS---VLWATL 287

Query: 206 INGCSKIGYL-------RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           +  C   G+        R+ +EL       +   +V L + +        A +L +QM  
Sbjct: 288 LGACRSGGHFDLAEKIXRRVIEL----EPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKN 343

Query: 259 KGV-----VSW---TAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           KG+      SW     MI+ F     +       + M++   R
Sbjct: 344 KGIEKTPGCSWIELNGMIHQFVAGDRSHLQTEQIYAMIEEMTR 386


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 210/661 (31%), Positives = 316/661 (47%), Gaps = 78/661 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R++H  +I +   +   +   LI+       I  A  +FD    ++   +N +I G  EN
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M    V P+ +T   V  +  +L    LGR +H  ++K+G   +  V 
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  M+  +G    A  VF +   K+    ++ W  +I+G  K G   KAVE + +M  
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKD----LVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 228 KNVA-----------------------------------SWV----SLIDGFMRKGDLKK 248
           + V                                    S+V    SLID + +   + K
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F ++P K V+SWT++I G   N  + +AL  FFQ +   ++ N  T+VS LSACA+
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEAL-FFFQQMILSLKPNSVTLVSVLSACAR 509

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL  G  +H +      G  G +  AL+DMY +CG +E A   F    EKD+ +W  +
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNIL 568

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           + G A  G+   A++ F KM+ S   PD   F ++L AC  SG V   L +F+SM   + 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGY-------------------------QN---SQNSF 460
           I P++KH+  VV+LL R G+    Y                         QN    + + 
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
             + ++  K    Y+LL N+YA  G+W +VARVR +M+   +  DPG S++EV G VH F
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAF 748

Query: 521 EAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
             G   H   KEI++ LE         G     +    +I   K E    HSE+LA+AFG
Sbjct: 749 LTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCGHSERLAIAFG 808

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD--Y 635
           LI T PGT I + K L +C +CH+ +K+ SK+ +R I +RDT +FH+FKDG CSC D  Y
Sbjct: 809 LINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGDEGY 868

Query: 636 W 636
           W
Sbjct: 869 W 869



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 188/383 (49%), Gaps = 44/383 (11%)

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
           R+   L+S       +  A  +F     ++L  +NVL+ G A+  +F   ++ +  ML +
Sbjct: 130 RLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            +RP+  T+P V ++   L  L+ GR +H  +++ G E D  V   L  MYV+ G    A
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSA 249

Query: 184 FKVFDETPEKNKSESVLLWNVLING----------------------------------- 208
             VFD  P +++    + WN +I+G                                   
Sbjct: 250 RLVFDRMPRRDR----ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK----GDLKKAGELFEQMPEKGVVSW 264
           C  +G  R   E+ G + K    + VS+ +  ++     G   +A  +F +M  K +VSW
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           TAMI+G+ +NG  EKA+  +  M   GV  ++ T+ S LSACA +G L+ G+ +H +   
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR 425

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
                   +  +L+DMY+KC  I+ A  VF     K++++WT++I GL ++ R  +A+ +
Sbjct: 426 TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485

Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
           F++M+ S  +P+    +++L+AC
Sbjct: 486 FQQMILS-LKPNSVTLVSVLSAC 507



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 157/349 (44%), Gaps = 43/349 (12%)

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LI  L      +  + H   M  L V     TY  + +        S G  +H  + K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
           +       +   L  M+V+ G    A+ VF +  E++    +  WNVL+ G +K GY  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERD----LFSWNVLVGGYAKAGYFDE 178

Query: 218 AVELF------GMMP---------------------------------KKNVASWVSLID 238
           A+ L+      G+ P                                 + +V    +LI 
Sbjct: 179 ALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALIT 238

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            +++ GD+  A  +F++MP +  +SW AMI+G+ +N    + L +FF M +  V  +  T
Sbjct: 239 MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT 298

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           + S +SAC  +G    G  VH Y+    F  + ++  +L+ M++  G  + A +VF + +
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            KDL++WTAMI G   +G  E+A++ +  M + G  PD     ++L+AC
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSAC 407



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 8/271 (2%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+  F+R GDL +A  +F +M E+ + SW  ++ G+++ G  ++AL ++ +ML  G+R 
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + +T    L  C  +  L  G  VH ++    F     +  AL+ MY KCG+I +A LVF
Sbjct: 194 DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                +D ++W AMI G   +    + ++ F  M     +PD     ++++AC   G  +
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474
           L           Y I+        V N L ++      +  ++  F+K   ++ K   S+
Sbjct: 314 LGREV-----HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK---MEFKDLVSW 365

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
             + + Y   G  +      T+M+   +  D
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 209/719 (29%), Positives = 347/719 (48%), Gaps = 110/719 (15%)

Query: 23  HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           H P   +   H+++    S      R++   +   NLF  + + + L + A L   +D  
Sbjct: 41  HPPPTYVL-NHLLTAYARSGRLPLARRLFDAMPDPNLFTRNALLSAL-AHARLLPDMD-- 96

Query: 83  LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-------LSVRPNRLTYPFV 135
             +F     ++   +N LI G +           +  +LR         VRP+R+T   +
Sbjct: 97  -RLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRPSRITMSGM 155

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
             + ++L   +LGR +HC I++ G    AF    L DMY ++G    A +VFDE   KN 
Sbjct: 156 VMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVFDEMVVKNV 215

Query: 196 ---------------------------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
                                          + W  ++ G ++ G   +A+++F  M  +
Sbjct: 216 VMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRAE 275

Query: 229 ---------------------------------------NVASWVSLIDGFMRKGDLKKA 249
                                                  N+    +L+D + +   ++ A
Sbjct: 276 GVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKCRSIRLA 335

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             +F +M  K ++SWTAMI G+ QNG  E+A+ +F +M   G++ NDFT+ S +S+CA +
Sbjct: 336 EAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGSVISSCANL 395

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            +LE G + H     +       + +ALV +Y KCG+IE A  +F E    D +++TA++
Sbjct: 396 ASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHDQVSYTALV 455

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G A  G+ ++ I  F+KM+  G +P+G  F+ +L+AC  SG V+   ++F SM+ D+ I
Sbjct: 456 SGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFHSMQQDHGI 515

Query: 430 EPSVKHHTVVVNLLSRVGQ---------------DSQGYQN-------------SQNSFT 461
                H+T +++L SR G+               D+ G+                + +  
Sbjct: 516 VLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDMEIGKWAAE 575

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
            LL+  P++P+SYVLL +++A++G W +VA +R  M+ R +KK+PG S+I+    VH F 
Sbjct: 576 NLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKYKNRVHIFS 635

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFG 578
           A    H  +  I+ KL+ + +   E+GY P    VLH++ + EK   L  HSEKLA+AFG
Sbjct: 636 ADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHSEKLAIAFG 695

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           LI       I++VK L +C DCH+  K+ SKI+ R+I++RD  RFH F +G CSC D+W
Sbjct: 696 LIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDFW 754


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 172/469 (36%), Positives = 268/469 (57%), Gaps = 37/469 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           L++ CS+I  L+   E+ G++ +  +      ++SL+  ++  G+L  A  LF+ M +K 
Sbjct: 500 LLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKT 559

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW  M+NG+ QNG  E+AL++F QM+  GV+  + +++S   AC+ + +L  G   H 
Sbjct: 560 LVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHG 619

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y           I  +++DMYAK G++  +  VF   KE+ + +W AM+ G  IHGR ++
Sbjct: 620 YALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKE 679

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI+ F++M  +G  PD   FL +LTAC +SG V   L + D M+  + + P++KH+  V+
Sbjct: 680 AIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVI 739

Query: 441 NLLSRVGQDSQGYQNSQNSFT-----------------------------KLLQLKPKHP 471
           ++L R G+  +  + +    +                             KL   +P+ P
Sbjct: 740 DMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKP 799

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA--K 529
            +YVLLSN+YA  G+W +V +VR  M+  S++KD G S+IE+NG V  F AG   L   +
Sbjct: 800 ENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFE 859

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           EI S    +     + GY P T  V H++ +EEK E L  HSEKLA+ +GLI+T+ GTT+
Sbjct: 860 EIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTL 919

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           ++ K L IC DCH+  K  SK+ +REIV+RD  RFH+FK+G CSC DYW
Sbjct: 920 RVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/496 (22%), Positives = 210/496 (42%), Gaps = 58/496 (11%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   L     ++  L+S    + S+  AL +F     +NL  +N +IR  ++N  
Sbjct: 206 VHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGL 265

Query: 110 FQSCISHFVFMLR----LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            + C      M+     ++  P+  T   V    A    + +G+G+H L +K  ++ +  
Sbjct: 266 SEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVV 325

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L DMY + G    A  +F    + N +++V+ WN ++ G S  G + K  +L   M
Sbjct: 326 VNNALMDMYSKCGCINDAQVIF----KLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQM 381

Query: 226 ---------------------------PKKNVASWVSL---------------IDGFMRK 243
                                      P        SL               +  + + 
Sbjct: 382 LAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKC 441

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G L  A  +F  +  K V SW A+I G+SQ+ +   +L  +FQM  +G+  + FTV S L
Sbjct: 442 GSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLL 501

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SAC+++ +L+ G  VH  I  N       +  +L+ +Y  CG +  A ++F   ++K L+
Sbjct: 502 SACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLV 561

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +W  M+ G   +G  E+A+  F++M+  G +P     +++  AC     ++L        
Sbjct: 562 SWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAH-GY 620

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
                +E +      V+++ ++ G       +   SF     LK +  +S+  +   Y  
Sbjct: 621 ALKCLLEDNAFIACSVIDMYAKNG-------SVMESFKVFNGLKERSVASWNAMVMGYGI 673

Query: 484 EGRWKDVARVRTLMQR 499
            GR K+  ++   MQR
Sbjct: 674 HGRAKEAIKLFEEMQR 689



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 177/399 (44%), Gaps = 51/399 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T++I+  S+  S D + S+FD    KNL  +N +I   + N  + + +  FV M+  S
Sbjct: 119 LCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITES 178

Query: 125 -VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            + P+  T+P V K+ A +S + +G  +H L+VK+ +  D FV   L   Y   G    A
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDA 238

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN--------VASWVS 235
            +VF   PE+N    ++ WN +I   S  G   +   L G M +K+        VA+  +
Sbjct: 239 LRVFKIMPERN----LVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLAT 294

Query: 236 -----------------------------------LIDGFMRKGDLKKAGELFEQMPEKG 260
                                              L+D + + G +  A  +F+    K 
Sbjct: 295 VLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKN 354

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRV 318
           VVSW  M+ GFS  G+  K   +  QML  G  +RA++ T+++A+  C +   L     +
Sbjct: 355 VVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKEL 414

Query: 319 HNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           H Y    +F      +  A V  YAKCG++  A  VF   + K + +W A+I G +    
Sbjct: 415 HCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSD 474

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              ++  + +M  SG  PD     ++L+AC     +KL 
Sbjct: 475 PRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLG 513



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/429 (21%), Positives = 192/429 (44%), Gaps = 56/429 (13%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHA----QIILHNLFASSRITTQLISSASLHKSIDY 81
           ++ +T  + + +    +    L+++H     Q  +HN   +  +    ++S +   S+ Y
Sbjct: 390 ADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHN---NELVANAFVASYAKCGSLSY 446

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F     K ++ +N LI G +++S  +  +  +  M    + P+  T   +  + + 
Sbjct: 447 AHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQ 506

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +  L LG+ +H LI+++ +E D+FV + L  +Y+  G+   A  +FD   +K    +++ 
Sbjct: 507 IKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDK----TLVS 562

Query: 202 WNVLINGCSKIGYLRKAVELF------GMMP----------------------------- 226
           WN ++NG  + G+  +A+ LF      G+ P                             
Sbjct: 563 WNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYAL 622

Query: 227 ----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
               + N     S+ID + + G + ++ ++F  + E+ V SW AM+ G+  +G A++A+ 
Sbjct: 623 KCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIK 682

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDM 340
           +F +M   G   ++ T +  L+AC   G +  G+   + +    FG+   +     ++DM
Sbjct: 683 LFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMK-TLFGMNPTLKHYACVIDM 741

Query: 341 YAKCGNIEAASLVFGE--TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PDG 397
             + G ++ A  +  E  ++E  +  W  ++    IH   E   +   K+  S  E P+ 
Sbjct: 742 LVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPEN 801

Query: 398 TVFLAILTA 406
            V L+ L A
Sbjct: 802 YVLLSNLYA 810



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 128/311 (41%), Gaps = 51/311 (16%)

Query: 145 LSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           + LGR +H L+ +S  +  D  +   +  MY   G    +  VFD   +KN    +  WN
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKN----LFQWN 152

Query: 204 VLINGCSKIGYLRKAVELF-------GMMPK----------------------------- 227
            +I+  S+       +E+F       G++P                              
Sbjct: 153 AVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVK 212

Query: 228 ----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
               ++V    +L+  +   G +  A  +F+ MPE+ +VSW +MI  FS NG +E+   +
Sbjct: 213 TRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLL 272

Query: 284 FFQMLDA----GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
             QM++         +  T+ + L  CA+   +  G  VH          +  +  AL+D
Sbjct: 273 LGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMD 332

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDG 397
           MY+KCG I  A ++F     K++++W  M+ G +  G   +     ++M+  G +   D 
Sbjct: 333 MYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADE 392

Query: 398 TVFLAILTACW 408
              L  +  C+
Sbjct: 393 VTILNAVPVCF 403



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 4/209 (1%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +KSS    +  T   ++S      S K  +++H  II + L   S +   L+S       
Sbjct: 485 MKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGE 544

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +  A  +FD    K L  +N ++ G  +N   +  +S F  M+   V+P  ++   V  +
Sbjct: 545 LSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGA 604

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            + L  L LGR  H   +K  +E +AF+   + DMY + G    +FKVF+   E+    S
Sbjct: 605 CSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKER----S 660

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK 227
           V  WN ++ G    G  ++A++LF  M +
Sbjct: 661 VASWNAMVMGYGIHGRAKEAIKLFEEMQR 689



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 10/112 (8%)

Query: 312 LEAGVRVHNYIS-----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           ++ G ++H  +S      ND      + T ++ MY+ CG+ + +  VF   ++K+L  W 
Sbjct: 97  IQLGRKIHQLVSESARLSND----DVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWN 152

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTACWYSGQVKLAL 417
           A+I   + +  Y   ++ F KM+  SG  PD   F  ++ AC    +V++ L
Sbjct: 153 AVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGL 204


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 254/434 (58%), Gaps = 32/434 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           SL+  +   G L  A ++FE M  +  V+W ++INGF+ NG   +AL ++ +M   GV  
Sbjct: 176 SLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEP 235

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + FT+VS LSAC ++GAL  G RVH Y+             AL+D+Y+KCGN   A  VF
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            E +E+ +++WT++I GLA++G   +A++ F ++   G +P    F+ +L AC + G + 
Sbjct: 296 DEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLD 355

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---------------- 458
              N+F  M+ +Y I P ++HH  +V+LL R G+    Y   +N                
Sbjct: 356 EGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGA 415

Query: 459 ------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                       +  ++ +L+ +H   +VLLSN+YA+E RW DV  VR +M  + +KK P
Sbjct: 416 CTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTP 475

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G+S +E+   V+ F  G   H  ++E ++ L  I    + +GY+P T  VL +I+EE KE
Sbjct: 476 GYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKE 535

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
            AL  H+EK+A+AF L+ T PGT I+I+K L +C DCH  +K  SK+ +REI++RD +RF
Sbjct: 536 TALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRF 595

Query: 623 HYFKDGTCSCRDYW 636
           H+FKDG+CSC+DYW
Sbjct: 596 HHFKDGSCSCKDYW 609



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 196/417 (47%), Gaps = 58/417 (13%)

Query: 16  TTNIKSSHKPSNNITETHI-------ISLIHSSNSTK-QLRQIHAQIILHNLFASSRITT 67
           T+   +S+  S N  + H+       ISL+    S++ +L+QIHA  I H +   +    
Sbjct: 12  TSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFN 71

Query: 68  Q--LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLS 124
           +  + +  SL   + +A  IF+     N+  +N +IRG AE+ +    +  F  M    S
Sbjct: 72  KHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASS 131

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + P+  T+PF+ K+VA L  +SLG G+H ++V++G +   FV+  L  MY  LG    A+
Sbjct: 132 ILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAY 191

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK----------- 227
           +VF+    +++    + WN +ING +  G   +A+ L+      G+ P            
Sbjct: 192 QVFEIMSYRDR----VAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSAC 247

Query: 228 ----------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                 +N  +  +L+D + + G+ + A ++F++M E+ VVSWT
Sbjct: 248 VELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWT 307

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           ++I G + NG   +AL +F ++   G++ ++ T V  L AC+  G L+ G      +   
Sbjct: 308 SLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMK-E 366

Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           ++G+   I     +VD+  + G + +A   +       + + W  ++    IHG  E
Sbjct: 367 EYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLE 423



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 86/169 (50%), Gaps = 1/169 (0%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACA 307
           A ++F Q+    + +W  MI GF+++     A+ +F QM  A  +  +  T      A A
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           K+  +  G  +H+ +  N F     +  +LV MY+  G++ +A  VF     +D + W +
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNS 207

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           +I G A++G   +A+  +++M   G EPDG   +++L+AC   G + L 
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 186/539 (34%), Positives = 283/539 (52%), Gaps = 43/539 (7%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P  L  P   KS A+   L LGR +H    + G++ + FV      MY + G+   A+++
Sbjct: 10  PGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 69

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-----PKKNVASWVSLID--G 239
           F+E   ++    V+ WN +I+G +  G   +A+++F  +     PK +  +  S++   G
Sbjct: 70  FEEMQYRD----VVSWNAMISGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMG 125

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
             R  D+     +F++M  KG++SW AM+  ++ N    +A+ +F +M   G+  +  T+
Sbjct: 126 KARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTL 185

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            + L +C +V AL  G R+H  I          +  AL+DMYA CG ++ A  VF     
Sbjct: 186 ATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGT 245

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           +D+++WT++I     HG   +AI  F+KM   G EPD   F+AIL AC ++G + +  ++
Sbjct: 246 RDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHY 305

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NSQN------------ 458
           F SM  ++ I P ++H+  +V+LL R G   + Y          N +             
Sbjct: 306 FYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHS 365

Query: 459 -------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                  +   LL+L PK    YVLLSNIYA  GRW DV+ VR++M+ + IKK PG S  
Sbjct: 366 NMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNA 425

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGC 568
           E+   VH F  G   H  +K I+ KL +++   RE GY P  E  LH+++EE +E  L  
Sbjct: 426 ELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSV 485

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
           HSEKLA+AF LI T PGT I+I   L  C DCH   K  S I+ REI+L+D  R HY K
Sbjct: 486 HSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 544



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 109/262 (41%), Gaps = 27/262 (10%)

Query: 80  DYAL--SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           D AL   +FD    K L  +N ++     N      +  F+ M +  + P+ +T   V  
Sbjct: 131 DIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLP 190

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           S   +S LSLG+ +H +I +  +     +   L DMY   G  + A  VFD    ++   
Sbjct: 191 SCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRD--- 247

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
            V+ W  +I+   + G+ R+A++LF  M  + +     ++V+++      G L      F
Sbjct: 248 -VVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYF 306

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKV-G 310
                       +M + F    + E    M   +  AG    A DF +V  +    +V G
Sbjct: 307 -----------YSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWG 355

Query: 311 ALEAGVRVHNYISCNDFGLKGA 332
           AL    R+H+ +   D GL  A
Sbjct: 356 ALLGACRIHSNM---DIGLLAA 374


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  315 bits (807), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 175/476 (36%), Positives = 266/476 (55%), Gaps = 43/476 (9%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMP 257
           +  L+  C+++  LR    L     K  + S V    SL+  +   G  + A  +F+++P
Sbjct: 125 YPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIP 184

Query: 258 --EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
             E+ +VSW +++NGF+ NG   + L +F +ML+     + FTVVS L+ACA++G L  G
Sbjct: 185 PPERNLVSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALG 244

Query: 316 VRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGL 372
            RVH +++    GL G    G AL+D+YAKCG ++ A  +FGE    + +++WT++I GL
Sbjct: 245 RRVHVFVA--KVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGL 302

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A++G    A+Q F  M      P     + +L AC + G V     +FD M+ +Y I P 
Sbjct: 303 AVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPR 362

Query: 433 VKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLL 464
           ++H   +V+LL R G+  + +                            +  + ++ +L+
Sbjct: 363 IEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLEIGEAAWARLV 422

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
           +L P H   YVLLSN+YA  GRW DV  +R  M    ++K+PG S +E+   V+ F  G 
Sbjct: 423 ELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVELRNSVYEFVMGD 482

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQ 581
             H    +I+  L DI    R QGY+P T  VL +I+ EEKE AL  HSE+LA+AF L++
Sbjct: 483 RSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYHSERLAIAFALLK 542

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + PGT I+IVK L +CGDCH  +K  SK+  REI++RD +RFH+FK G CSC+DYW
Sbjct: 543 SLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGGACSCKDYW 598



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 175/405 (43%), Gaps = 70/405 (17%)

Query: 33  HIISLIH---SSNSTKQLRQIHAQIILHNLFASSRITTQ--------LISSASLH-KSID 80
           H ++L+    +S S    +Q+HA+     L A+  +T          L   A+L    + 
Sbjct: 20  HCVALLRLHLASPSLATAKQLHAR----ALRAAPGVTPSHPLLAKHLLFHLAALKAPPLR 75

Query: 81  YALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           YA+++     P  +    N ++R  A ++  +  ++      R    P+  TYP + ++ 
Sbjct: 76  YAVAVLSGLLPSPDPFSLNTVLRIFASSARPRVALA---LHRRHLAPPDTHTYPPLLQAC 132

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L  L  G GLH    K+G+    FV+  L  +Y   G    A +VFDE P   +  ++
Sbjct: 133 ARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPER--NL 190

Query: 200 LLWNVLING-----------------------------------CSKIGYLR--KAVELF 222
           + WN ++NG                                   C++IG L   + V +F
Sbjct: 191 VSWNSVLNGFAANGRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVF 250

Query: 223 ----GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
               G++   N  +  +LID + + G +  A ++F +M   + VVSWT++I G + NG  
Sbjct: 251 VAKVGLV--GNAHAGNALIDLYAKCGGVDDARKMFGEMGVGRTVVSWTSLIVGLAVNGFG 308

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--T 335
             AL +F  M    +   + T+V  L AC+  G ++ G R  + +   ++G+   I    
Sbjct: 309 MDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKA-EYGITPRIEHLG 367

Query: 336 ALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            +VD+  + G +E A + +     E + + W  ++   A+H + E
Sbjct: 368 CMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKKLE 412



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 116/277 (41%), Gaps = 17/277 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHIFNVLIRGLAEN 107
           +HA+   + L +   +   L+         + A  +FD   P  +NL  +N ++ G A N
Sbjct: 144 LHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAAN 203

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 ++ F  ML +   P+  T   V  + A + +L+LGR +H  + K G+  +A   
Sbjct: 204 GRPNEVLTVFREMLEVEFAPDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAG 263

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L D+Y + G    A K+F E        +V+ W  LI G +  G+   A++LF MM +
Sbjct: 264 NALIDLYAKCGGVDDARKMFGEM---GVGRTVVSWTSLIVGLAVNGFGMDALQLFSMMER 320

Query: 228 KNVA----SWVSLIDGFMRKGDLKKAGELFEQM-PEKGVVS----WTAMINGFSQNGEAE 278
           + +     + V ++      G +      F+QM  E G+         M++   + G  E
Sbjct: 321 EKLMPTEITMVGVLYACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVE 380

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +A      M    +  N     + L ACA    LE G
Sbjct: 381 EAHNYITTM---PLEPNAVVWRTLLGACAMHKKLEIG 414


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 199/661 (30%), Positives = 319/661 (48%), Gaps = 110/661 (16%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVA 140
           A  +FD    +   ++ + I G A    +   +  F  ML      PN      V +  A
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY-------------------------- 174
            +  +  G+ +H  ++++GV  D  +   + DMY                          
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 175 -----VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY-------LRKAVE-- 220
                +Q G   G+ ++FDE+P ++ +     WN +I+G  + G+       LR+  +  
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTS----WNTIISGLMRSGHAADALSHLRRMAQAG 239

Query: 221 -------------LFGMMPKKNVASWV-----------------SLIDGFMRKGDLKKAG 250
                        L GM+   ++   +                 SL+D + + G L+ A 
Sbjct: 240 VVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAA 299

Query: 251 ELFEQ---MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            +F+    +      +W+ M+ G+ QNG  E+AL +F +ML  GV A+ FT+ S  +ACA
Sbjct: 300 SVFDHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACA 359

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            VG +E G +VH  +    + L   + +A+VDMYAKCGN+E A  +F     K++  WT+
Sbjct: 360 NVGMVEQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTS 419

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           M+   A HG+   AI+ F++M      P+    + +L+AC + G V     +F  M+ +Y
Sbjct: 420 MLCSYASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEY 479

Query: 428 FIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQN--------------------------S 459
            I PS++H+  +V+L  R G    ++ +    N                          +
Sbjct: 480 GIVPSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLA 539

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
             KL+QL+     SYV+LSNIYA   +W D   +R  MQ R ++K PG S+I +   VH 
Sbjct: 540 SEKLVQLEQCDAGSYVMLSNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHT 599

Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALA 576
           F AG   H  + EI++ LE ++   +E GY   T+ V+H++++E +E AL  HSEKLA+A
Sbjct: 600 FVAGDASHPQSAEIYAYLEKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIA 659

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
           FG+I T  GT ++I K L +C DCH  +KY S  + REIV+RD  RFH+FKD +CSC D+
Sbjct: 660 FGIISTPSGTPLRIFKNLRVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDF 719

Query: 636 W 636
           W
Sbjct: 720 W 720



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 89/190 (46%), Gaps = 5/190 (2%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VR 293
           S++  ++R+     A  +F++ P +    WT  I+G ++ G     +  F +ML  G   
Sbjct: 50  SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT 109

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N F + + +  CA +G +E+G RVH ++  N   L   +  A++DMYAKCG  E A  V
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           FG   E+D ++W   I      G    ++Q F +        D T +  I++    SG  
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDESPLR----DTTSWNTIISGLMRSGHA 225

Query: 414 KLALNFFDSM 423
             AL+    M
Sbjct: 226 ADALSHLRRM 235



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 121/246 (49%), Gaps = 18/246 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP--KNLHI-FNVLIRGL 104
           RQ+H ++++  L   + + + L+        ++ A S+FDH++P  ++++  ++ ++ G 
Sbjct: 264 RQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWSTMVAGY 323

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
            +N   +  +  F  MLR  V  +R T   V+ + A++ ++  GR +H  + K   + DA
Sbjct: 324 VQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDA 383

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            +   + DMY + G    A  +FD    KN    + +W  ++   +  G  R A+ELF  
Sbjct: 384 PLASAIVDMYAKCGNLEDARSIFDRACTKN----IAVWTSMLCSYASHGQGRIAIELFER 439

Query: 225 MPKK----NVASWVSLIDGFMRKGDLKKAGEL-FEQMPEK-GVVS----WTAMINGFSQN 274
           M  +    N  + V ++      G L   GEL F+QM E+ G+V     +  +++ + ++
Sbjct: 440 MTAEKMTPNEITLVGVLSACSHVG-LVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRS 498

Query: 275 GEAEKA 280
           G  +KA
Sbjct: 499 GLLDKA 504


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 200/686 (29%), Positives = 338/686 (49%), Gaps = 80/686 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   ++    +     + R+IH  I    L ++  ++T L+   +    +D A  +F
Sbjct: 118 NRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVF 177

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++  +N +I G + +      ++  +  ++  V PN  T   V  +VA ++ L 
Sbjct: 178 DKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLR 237

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EKNKSESVLLWNVL 205
            G+ +H   V+ G   D  V   + D+Y +      A ++FD     KN+    + W+ +
Sbjct: 238 HGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNE----VTWSAM 293

Query: 206 INGCSKIGYLRKAVELFG--MMPKKNV--------------------------------- 230
           +       ++R+A+ELF   +M K +V                                 
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 231 ASWV-------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
           + +V       +L+  + + G +  A   F +M  +  VS+TA+I+G+ QNG +E+ L M
Sbjct: 354 SGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRM 413

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F +M  +G+     T+ S L ACA +  L  G   H Y     F     I  AL+DMYAK
Sbjct: 414 FLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAK 473

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           CG I+ A  VF    ++ +++W  MI    IHG   +A+  F  M   G +PD   F+ +
Sbjct: 474 CGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICL 533

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---------------- 447
           ++AC +SG V     +F++M  D+ I P ++H+  +V+LLSR G                
Sbjct: 534 ISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEP 593

Query: 448 ---------QDSQGYQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                       + Y+N    +    K+ +L P+   ++VLLSN+Y+A GRW D A+VR 
Sbjct: 594 DVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRF 653

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGG---HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
             + +  +K PG S+IE++G VH F  GG   H    +I +KL++++   +  GY   + 
Sbjct: 654 TQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESS 713

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
           +V  ++ +EEKE  L  HSEKLA+AFG++  +P   I + K L +CGDCH+ +K+ S ++
Sbjct: 714 YVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVT 773

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +R+I +RD +RFH+FKDG C+C D+W
Sbjct: 774 KRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 172/371 (46%), Gaps = 49/371 (13%)

Query: 82  ALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           A  +FD     PKN+ ++N+LIR  A N  ++  I  +  ML   + PNR T+PFV K+ 
Sbjct: 70  ARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKAC 129

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           ++L   S GR +HC I +  +E + +V   L D Y + G    A +VFD+  +++    V
Sbjct: 130 SALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRD----V 185

Query: 200 LLWNVLINGCS-----------------------------------KIGYLRKAVELFGM 224
           + WN +I+G S                                   ++  LR   E+ G 
Sbjct: 186 VAWNSMISGFSLHEGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGF 245

Query: 225 MPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEK 279
             ++    +V     ++D + +   +  A  +F+ M   K  V+W+AM+  +       +
Sbjct: 246 CVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMRE 305

Query: 280 ALAMFFQML---DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
           AL +F Q+L   D  +  +  T+ + +  CA +  L  G  +H Y   + F L   +G  
Sbjct: 306 ALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNT 365

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+ MYAKCG I  A   F E   +D +++TA+I G   +G  E+ ++ F +M  SG  P+
Sbjct: 366 LLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPE 425

Query: 397 GTVFLAILTAC 407
                ++L AC
Sbjct: 426 KATLASVLPAC 436



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 94/174 (54%), Gaps = 4/174 (2%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           L+D ++   +LK A  +F++MP   K VV W  +I  ++ NG  E+A+ ++++ML  G+ 
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N FT    L AC+ +     G  +H  I          + TALVD YAKCG ++ A  V
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEV 176

Query: 354 FGETKEKDLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           F +  ++D++ W +MI G ++H G Y++  +   +M  +   P+ +  + +L A
Sbjct: 177 FDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQ-NDVSPNSSTIVGVLPA 229



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 9/164 (5%)

Query: 337 LVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           LVD+Y  C  ++ A  VF +   + K+++ W  +I   A +G YE+AI  + KM+  G  
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGIT 116

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           P+   F  +L AC    +          ++    +E +V   T +V+  ++ G       
Sbjct: 117 PNRFTFPFVLKACSALKEASEGREIHCDIK-RLRLESNVYVSTALVDFYAKCG----CLD 171

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
           +++  F K+ +      +S  ++S     EG + +VAR+   MQ
Sbjct: 172 DAKEVFDKMHKRDVVAWNS--MISGFSLHEGSYDEVARLLVQMQ 213


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 199/649 (30%), Positives = 327/649 (50%), Gaps = 95/649 (14%)

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
           LH++   A  +FD    +N+  +  L+ G   NS     +  FV ML +   P+  T   
Sbjct: 85  LHRAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGA 144

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
              +  +   + LG+ +H   +K G E    +   L  +Y +LG    A + F   PEKN
Sbjct: 145 TLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKN 204

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVEL----------FGMMPKKNVASWVSLIDG----- 239
               V+ W  +I+ C++     + VEL           G+MP +   + V  + G     
Sbjct: 205 ----VITWTTMISACAED---EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDL 257

Query: 240 ----------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                                       ++RKG+  +A  LFEQM +  +++W AMI+G+
Sbjct: 258 NLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGY 317

Query: 272 SQNGEAEK-----------ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +Q  ++ K           AL +F  +  + ++ + FT  S LS C+ + ALE G ++H 
Sbjct: 318 AQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHA 377

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
               + F     + +ALV+MY KCG I+ A+  F E   +  +TWT+MI G + HG+ ++
Sbjct: 378 QTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQE 437

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AIQ F++M  +G  P+   F+++L+AC Y+G V+ A ++FD M+ +Y IEP V H+  ++
Sbjct: 438 AIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMI 497

Query: 441 NLLSRVGQDSQGYQ-------------------------NSQNSF---TKLLQLKPKHPS 472
           ++  R+G+    +                          N + +F    KLL+LKPK   
Sbjct: 498 DMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIE 557

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKE 530
           +Y+LL N+Y +  RW+DVARVR LM++  +      S+I +   V+ F A    H  A E
Sbjct: 558 TYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDRTHPQATE 617

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC---HSEKLALAFGLIQTTPGTT 587
           ++  LE+++  A+  GY P     L + +++++ A G    HSE+LA+A GL+QT PG T
Sbjct: 618 LYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGAT 677

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
           +++ K +T+C DCHS +K  S +  REI++RD+ R H FKDG CSC D+
Sbjct: 678 VRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 175/396 (44%), Gaps = 59/396 (14%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H   I +   + + +   L S  +   S+D AL  F     KN+  +  +I   AE+
Sbjct: 159 KQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAED 218

Query: 108 SH-FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
               +  +S F+ ML   V PN  T   V     +   L+LG+ +     K G E +  V
Sbjct: 219 EECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPV 278

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------------ 208
           +     +Y++ G+T  A ++F    E+ +  S++ WN +I+G                  
Sbjct: 279 KNSTMYLYLRKGETDEAMRLF----EQMEDASIITWNAMISGYAQIMDSAKDDLQARSRG 334

Query: 209 ----------------------------CSKIGYLRKAVELFGMMPKKNVASWV----SL 236
                                       CS +  L +  ++     K    S V    +L
Sbjct: 335 FQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 394

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           ++ + + G ++ A + F +MP +  V+WT+MI+G+SQ+G+ ++A+ +F +M  AGVR N+
Sbjct: 395 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 454

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLV 353
            T VS LSAC+  G +E      + +   ++ ++  +     ++DM+ + G +E A S +
Sbjct: 455 ITFVSLLSACSYAGLVEEAEHYFDMMK-KEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFI 513

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
                E +   W++++ G   HG  E A     K++
Sbjct: 514 KRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLL 549


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/585 (31%), Positives = 302/585 (51%), Gaps = 45/585 (7%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            L  +N ++ G A +   +  ++    ML   + P+  T   + KSVA+  ++  G  +H
Sbjct: 271 TLATWNAVLSGCARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVH 330

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  ++ G+  DA+    L DMY + G+   A +VFD    +N    +  WN L+ G +  
Sbjct: 331 CFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRN----LATWNSLVAGHAYA 386

Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSW 264
           G    A+EL   M +     NV +W  LI G+   G   +A  L  Q+   G    VVSW
Sbjct: 387 GQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSW 446

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G   NGE E +   F +M   GV+ +  T++  L ACA +  L+ G  +H +   
Sbjct: 447 TSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRACAGLALLKKGKELHCFALR 506

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +     +GTAL+DMY+K G++ +A  +FG  + K+L+   AM+ GLA+HG+  +AI  
Sbjct: 507 RAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITL 566

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  +  SG +PD   F A+LTAC   G +     +FD+M   Y + P+ +++  +V+LL+
Sbjct: 567 FHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLA 626

Query: 445 RVGQDSQGYQNSQNSFT----------------------------KLLQLKPKHPSSYVL 476
           R G   +     + S                               L +L+P + ++Y++
Sbjct: 627 RSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAARNLFRLEPYNSANYLM 686

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           + ++Y  E  + +   ++  M+ R +   PGWS+I++   +H FE  G  H    EI  +
Sbjct: 687 IMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVFEVDGSPHPETAEICEE 746

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPG-TTIKIVK 592
           L  ++   +  GY+P T  V++N+ +EEKE+ L CH+EKLA+ +GLI +      ++++K
Sbjct: 747 LMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLLLCHTEKLAITYGLIHSDASRMPVRVIK 806

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
              +C DCH + K+ S +  R+I+LRD  RFH+F DG CSC DYW
Sbjct: 807 NTRMCSDCHEVAKHISALCGRQIILRDAVRFHHFVDGNCSCNDYW 851



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 176/395 (44%), Gaps = 37/395 (9%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K+  ++N  +  LAE   +   I  F  M    V  +      V  +    +    G+ +
Sbjct: 132 KDAVLWNKQVAMLAEAGEWDEAIGAFREMQARGVAADGYALARVLHACGRAAARREGKAV 191

Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           H   +K+G V+    V   LA MY +      A  V        +S   + W+ ++  C 
Sbjct: 192 HAHALKAGLVDAHPLVPGFLAGMYAEGADVAAATAVLLRATPPPRS---VAWDAVVACCV 248

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           ++G +  A+EL G M +          DG                 PE  + +W A+++G
Sbjct: 249 RLGLVDDAMELAGRMAR----------DG-----------------PEPTLATWNAVLSG 281

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            +++G   +ALA+  +ML+ G+  +  TV S L + A  G +  G+ VH +   +     
Sbjct: 282 CARHGRDREALAVLRRMLEQGLWPDATTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPD 341

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              GTALVDMYAKCG ++ A  VF   + ++L TW +++ G A  G++E A++  ++M  
Sbjct: 342 AYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAGHAYAGQFEAALELVERMKR 401

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
           +  +P+ T +  ++T    +G    A+     ++    + P+V   T +++     G+  
Sbjct: 402 NRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQIKA-AGLTPNVVSWTSLISGSCHNGE-- 458

Query: 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
             Y++S N F K +Q     PS   +L  + A  G
Sbjct: 459 --YEDSFN-FFKEMQKDGVQPSLVTMLVLLRACAG 490



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 159/363 (43%), Gaps = 17/363 (4%)

Query: 32  THIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           T + SL+ S  +   +R   ++H   + H L   +   T L+   +    +D A  +FD 
Sbjct: 308 TTVSSLLKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDT 367

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              +NL  +N L+ G A    F++ +     M R  + PN  T+  +    +   L S  
Sbjct: 368 LEHRNLATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQA 427

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
             L   I  +G+  +      L       G+   +F  F E  +     S++   VL+  
Sbjct: 428 MLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRA 487

Query: 209 CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
           C+ +  L+K  EL     ++    ++    +LID + + G L  A  +F ++  K +V  
Sbjct: 488 CAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCC 547

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            AM+ G + +G++ +A+ +F  +  +G++ +  T  + L+AC  +G +  G    + +  
Sbjct: 548 NAMLTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMET 607

Query: 325 NDFGLKGAIGTA-----LVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
                 G + TA     +VD+ A+ G + EA +L+     +     W A++ G +IHG  
Sbjct: 608 K----YGVVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNL 663

Query: 379 EQA 381
           + A
Sbjct: 664 DLA 666



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 125/303 (41%), Gaps = 28/303 (9%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
           +L D   R G    +  L E+  E    K  V W   +   ++ GE ++A+  F +M   
Sbjct: 104 ALSDLLARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAMLAEAGEWDEAIGAFREMQAR 163

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA-------LVDMYAK 343
           GV A+ + +   L AC +  A   G  VH +       LK  +  A       L  MYA+
Sbjct: 164 GVAADGYALARVLHACGRAAARREGKAVHAH------ALKAGLVDAHPLVPGFLAGMYAE 217

Query: 344 CGNIEAASLV-FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
             ++ AA+ V    T     + W A++      G  + A++   +M   G EP    + A
Sbjct: 218 GADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRMARDGPEPTLATWNA 277

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462
           +L+ C   G+ + AL     M  +  + P     + ++  ++  G    G +   + F  
Sbjct: 278 VLSGCARHGRDREALAVLRRM-LEQGLWPDATTVSSLLKSVANAGMVRHGME--VHCFFL 334

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH--RF 520
              L P   +   L+ ++YA  GR     RV   ++ R++     W+ + V GH +  +F
Sbjct: 335 RHGLVPDAYTGTALV-DMYAKCGRLDCARRVFDTLEHRNLAT---WNSL-VAGHAYAGQF 389

Query: 521 EAG 523
           EA 
Sbjct: 390 EAA 392



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 86/202 (42%), Gaps = 9/202 (4%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T LI   S   S+  A  IF     KNL   N ++ GLA +      I+ F  + R  
Sbjct: 515 VGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLFHDLWRSG 574

Query: 125 VRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           ++P+ +T+  +  +  S+ L++ G      +  K GV   A     + D+  + G    A
Sbjct: 575 LKPDSITFTALLTACRSMGLITEGWEYFDNMETKYGVVPTAENYACMVDLLARSGYLDEA 634

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLIDG 239
             + + +P    +    LW  L+ GCS  G L      A  LF + P  N A+++ ++  
Sbjct: 635 MALIERSPVDPGAS---LWGALLTGCSIHGNLDLAEVAARNLFRLEP-YNSANYLMIMSL 690

Query: 240 FMRKGDLKKAGELFEQMPEKGV 261
           +  +    +A  L   M  +GV
Sbjct: 691 YEHEQMYDEADSLKYAMKARGV 712


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 181/585 (30%), Positives = 304/585 (51%), Gaps = 45/585 (7%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N ++ G + +   +  +     ML+  +RP+  T   + KSVA+  LL  G  +H
Sbjct: 238 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 297

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  +++ +E D +    L DMY + G+   A KVFD    +N    +  WN L+ G +  
Sbjct: 298 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRN----LTTWNSLVAGYANA 353

Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
           G    A+EL  +M K     ++ +W  LI G+   G   +A  L  Q+   GV    VSW
Sbjct: 354 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 413

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G   NGE E +     +M   GV+ +  T+   L ACA +   + G  +H +   
Sbjct: 414 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 473

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +     + TAL+DMY+K G++ +A ++F   ++K+L+   AM+ GLA+HG+  +AI+ 
Sbjct: 474 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 533

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  SG +PD   F A+LTAC   G V     +FD M   Y ++P+ +++  +V+LL+
Sbjct: 534 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPTTENYACMVDLLA 593

Query: 445 RVGQDSQGYQNSQNS----------------------------FTKLLQLKPKHPSSYVL 476
           R G   +     + S                               L +L+P + ++Y+L
Sbjct: 594 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFRLEPYNSANYLL 653

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           + N+Y  E  + +   ++  M+ R +   PGWS+I++   +H FE  G  H    EI+ +
Sbjct: 654 MMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEE 713

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPG-TTIKIVK 592
           L  ++   ++ GY+P T  + +N++ EEKE+ L  H+EKLA+ +GLI++      ++++K
Sbjct: 714 LIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMK 773

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
              +C DCH + K+ S +  R+I+LRD  RFH+F DG CSC DYW
Sbjct: 774 NTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 76/270 (28%), Positives = 126/270 (46%), Gaps = 31/270 (11%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H   +K  ++    V   LA MY +      A +V D       + SV+ WN ++ 
Sbjct: 157 GRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAATRVLDAM----GAGSVVPWNAVVA 212

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
            C+++G +  A+EL   M +                             PE  V +W  +
Sbjct: 213 CCARLGLVDDALELAARMSRSG---------------------------PEPNVATWNTV 245

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           ++G S++G   +AL +   ML  G+R +  TV S L + A  G L  G+ +H +   N  
Sbjct: 246 LSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQL 305

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                 GTALVDMYAKCG ++ A  VF   + ++L TW +++ G A  GR++ A++  + 
Sbjct: 306 EPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANAGRFDIALELVEL 365

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
           M  +  +PD T +  ++T    +GQ   A+
Sbjct: 366 MKKNRLDPDITTWNGLITGYSMNGQSSQAV 395



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/360 (23%), Positives = 156/360 (43%), Gaps = 21/360 (5%)

Query: 32  THIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           T + SL+ S  +T  LR   +IH   + + L       T L+   +    +D A  +FD 
Sbjct: 275 TTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDA 334

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-----NRLTYPFVSKSVASLS 143
              +NL  +N L+ G A    F   +     M +  + P     N L   +     +S +
Sbjct: 335 LEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQA 394

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           +L L +     I  +GV  +      L       G+   +F    E  +     S++  +
Sbjct: 395 VLLLRQ-----IKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMS 449

Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
           VL+  C+ +   +K  EL     ++    ++    +LID + + G L  A  +FE + +K
Sbjct: 450 VLLRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQK 509

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            +V   AM+ G + +G+  +A+ +F  M ++G++ +  T  + L+AC  +G +  G    
Sbjct: 510 NLVLCNAMLTGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYF 569

Query: 320 NYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           + +    +G+K        +VD+ A+CG + EA   +     +     W A++ G +IHG
Sbjct: 570 DGME-TKYGVKPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHG 628



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 25/271 (9%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           +L+D   R G       L  +  E G    V W   +   ++  E ++A+A+F +M   G
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           V       V A        AL+  +  H  +              L  MYA+  ++ AA+
Sbjct: 152 VPRRRGRAVHAY-------ALKLALDAHPLVP-----------GFLAGMYAENADVAAAT 193

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            V        ++ W A++   A  G  + A++   +M  SG EP+   +  +L+ C   G
Sbjct: 194 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 253

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471
           + + AL    SM     + P     + ++  ++  G    G +   + F    QL+P   
Sbjct: 254 RDREALGVVASM-LKQGLRPDATTVSSLLKSVANTGLLRHGME--IHCFFLRNQLEPDVY 310

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
           +   L+ ++YA  GR     +V   ++ R++
Sbjct: 311 TGTALV-DMYAKCGRLDCAQKVFDALEHRNL 340



 Score = 46.2 bits (108), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 25/268 (9%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K+ +++H   +         ++T LI   S   S+  A  IF+    KNL + N ++ GL
Sbjct: 462 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 521

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
           A +   +  I  F  M    ++P+ +T+  +  +  S+ L++ G      +  K GV+  
Sbjct: 522 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVKPT 581

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAV 219
                 + D+  + G    A    + +P    +     W  L+ GCS  G L      A 
Sbjct: 582 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASH---WGALLTGCSIHGNLALAEVAAR 638

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---F 271
            LF + P  N A+++ +++ +  +    +A  L   M  +GV      SW  +  G   F
Sbjct: 639 NLFRLEP-YNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVF 697

Query: 272 SQNGEA--------EKALAMFFQMLDAG 291
             +G+         E+ + + FQ+  AG
Sbjct: 698 EVDGKPHPETAEIYEELIRLVFQIKKAG 725


>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
          Length = 580

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 181/464 (39%), Positives = 269/464 (57%), Gaps = 53/464 (11%)

Query: 219 VELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           V+L  ++ +  VA+ V    +L+D + + GDL  A ++F++M  + V +W +++ G +Q 
Sbjct: 124 VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG 183

Query: 275 GEAEKALAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            E   ALA+F      FQ L +    N+ T+V+ALSACA++G L+ G+ VH +     FG
Sbjct: 184 TEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEF--AKRFG 241

Query: 329 LKG--AIGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQY 384
           L     +  +L+DMY+KCG++  A  VF   K +D  L+++ A I   ++HG    A++ 
Sbjct: 242 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRL 301

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M  +  EPDG  +LA+L  C +SG V   L  F+SMR    + P++KH+  +V+LL 
Sbjct: 302 FDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLG 356

Query: 445 RVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVL 476
           R G+ ++ Y                              ++ +  KL +L       YVL
Sbjct: 357 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 416

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           LSN+YA++ RW DV RVR  M+   ++K PG+SY E++G +H+F  G   H   +EI+  
Sbjct: 417 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 476

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LEDI++   E GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG T++++K 
Sbjct: 477 LEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKN 536

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L ICGDCH + K  SK   R IV+RD  RFH F+DG CSCRDYW
Sbjct: 537 LRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 580



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 131/320 (40%), Gaps = 45/320 (14%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA ++   + A  R+ T L+ S +    +  A  +FD  T +++  +N L+ GLA+ +
Sbjct: 125 QLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQGT 184

Query: 109 HFQSCISHFVFM------LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
                ++ F  +      L     PN +T      + A + LL  G  +H    + G++ 
Sbjct: 185 EPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR 244

Query: 163 DAFVRVHLADMYVQLGKTR---------------------------------GAFKVFDE 189
           +  V   L DMY + G                                     A ++FDE
Sbjct: 245 NVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDE 304

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG-MMPKKNVASWVSLIDGFMRKGDLKK 248
            P + + + V    VL  GC+  G +   + +F  M    N+  + +++D   R G L +
Sbjct: 305 MPTRIEPDGVTYLAVLC-GCNHSGLVDDGLRVFNSMRVAPNMKHYGTIVDLLGRAGRLTE 363

Query: 249 AGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSAC 306
           A +    MP    +V W  ++     +G  E A     ++ + G   + D+ ++S + A 
Sbjct: 364 AYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVLLSNVYA- 422

Query: 307 AKVGALEAGVRVHNYISCND 326
           +K   ++ G RV + +  ND
Sbjct: 423 SKARWMDVG-RVRDTMRSND 441


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 207/630 (32%), Positives = 314/630 (49%), Gaps = 110/630 (17%)

Query: 49  QIHAQIILHNLF--ASSRITTQLISSASLHK--SIDYALSIFDHFTPKNLHIFNVLIRGL 104
           Q+H Q++   +    +SR  +++ + A+L     ++YA  +       N + +N L+R  
Sbjct: 11  QVHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAF 70

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           ++              L +   P+  T+PF+ K  +   L  LG+ LH L+ K G     
Sbjct: 71  SQTPLPTPPFHALSLFLSMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFA--- 127

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
                  D+Y+Q                          NVL++  S+ G           
Sbjct: 128 ------PDLYIQ--------------------------NVLLHMYSEFG----------- 144

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                               DL  A  LF++MP + VVSWT+MI G   +    +A+ +F
Sbjct: 145 --------------------DLLLARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLF 184

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL----KGAIGTALVDM 340
            +ML  GV  N+ TV+S L ACA  GAL  G +VH  +   ++G+    K  + TALVDM
Sbjct: 185 ERMLQCGVEVNEATVISVLRACADSGALSMGRKVHANL--EEWGIEIHSKSNVSTALVDM 242

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           YAK G I +A  VF +   +D+  WTAMI GLA HG  + AI  F  M  SG +PD    
Sbjct: 243 YAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTV 302

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQ- 457
            A+LTAC  +G ++     F  ++  Y ++PS++H   +V+LL+R G  ++++ + N+  
Sbjct: 303 TAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMP 362

Query: 458 ---------------------NSFTKLLQ------LKPKHPSSYVLLSNIYAAEGRWKDV 490
                                +   +L++      ++     SY+L SN+YA+ G+W + 
Sbjct: 363 IEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRADDSGSYILASNVYASTGKWCNK 422

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
           A VR LM ++ + K PG S IEV+G VH F  G   H  A+EI  +L +++   R++GY 
Sbjct: 423 AEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPEAEEIFVELAEVVDKIRKEGYD 482

Query: 549 PG-TEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P  +E +L    EEK   L  HSEKLALA+GLI+   G+TI+IVK L  C DCH  MK  
Sbjct: 483 PRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLIRIGHGSTIRIVKNLRSCEDCHEFMKLI 542

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           SKI +R+I++RD  RFH+FK+G CSC+DYW
Sbjct: 543 SKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 127/319 (39%), Gaps = 47/319 (14%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S   P +N T   ++     S      +Q+HA +          I   L+   S    + 
Sbjct: 88  SMPSPPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLL 147

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            A S+FD    +++  +  +I GL  +      I+ F  ML+  V  N  T   V ++ A
Sbjct: 148 LARSLFDRMPHRDVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVISVLRACA 207

Query: 141 SLSLLSLGRGLHCLIVKSGVEY--DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
               LS+GR +H  + + G+E    + V   L DMY + G    A KVFD+   ++    
Sbjct: 208 DSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRD---- 263

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMP-------------------------- 226
           V +W  +I+G +  G  + A+++F      G+ P                          
Sbjct: 264 VFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFS 323

Query: 227 --------KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
                   K ++  +  L+D   R G LK+A +    MP E   V W  +I     +G+A
Sbjct: 324 DVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDA 383

Query: 278 EKALAMFFQMLDAGVRAND 296
           ++A  +   +    +RA+D
Sbjct: 384 DRAERLMKHLEIQDMRADD 402


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 289/566 (51%), Gaps = 76/566 (13%)

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           S L   + LHC  +K    Y+  V       Y + G    A +VF       +S++V  W
Sbjct: 409 SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI----RSKTVNSW 464

Query: 203 NVLING-----------------------------------CSKIGYLRKAVELFGMMPK 227
           N LI G                                   CSK+  LR   E+ G + +
Sbjct: 465 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 524

Query: 228 ----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
               +++  ++S++  ++  G+L     LF+ M +K +VSW  +I G+ QNG  ++AL +
Sbjct: 525 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F QM+  G++    +++    AC+ + +L  G   H Y   +       I  +L+DMYAK
Sbjct: 585 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 644

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G+I  +S VF   KEK   +W AMI G  IHG  ++AI+ F++M  +G  PD   FL +
Sbjct: 645 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 704

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS------------- 450
           LTAC +SG +   L + D M+  + ++P++KH+  V+++L R GQ               
Sbjct: 705 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 764

Query: 451 ----------------QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                           Q  +  +    KL +L+P+ P +YVLLSN+YA  G+W+DV +VR
Sbjct: 765 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA--KEIHSKLEDIMAGAREQGYMPGTE 552
             M   S++KD G S+IE+N  V  F  G   L   +EI S    +     + GY P T 
Sbjct: 825 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 884

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            V H++ +EEK E L  HSEKLAL +GLI+T+ GTTI++ K L IC DCH+  K  SK+ 
Sbjct: 885 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 944

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
           +REIV+RD  RFH+FK+G CSC DYW
Sbjct: 945 EREIVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 175/389 (44%), Gaps = 50/389 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T++I+  ++  S D +  +FD    KNL  +N +I   + N  +   +  F+ M+  +
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181

Query: 125 -VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            + P+  TYP V K+ A +S + +G  +H L+VK+G+  D FV   L   Y   G    A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN--------VASWVS 235
            ++FD  PE+N    ++ WN +I   S  G+  ++  L G M ++N        VA+ V+
Sbjct: 242 LQLFDIMPERN----LVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVT 297

Query: 236 -----------------------------------LIDGFMRKGDLKKAGELFEQMPEKG 260
                                              L+D + + G +  A  +F+    K 
Sbjct: 298 VLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKN 357

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRV 318
           VVSW  M+ GFS  G+      +  QML  G  V+A++ T+++A+  C     L +   +
Sbjct: 358 VVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKEL 417

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H Y    +F     +  A V  YAKCG++  A  VF   + K + +W A+I G A     
Sbjct: 418 HCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDP 477

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             ++    +M  SG  PD     ++L+AC
Sbjct: 478 RLSLDAHLQMKISGLLPDSFTVCSLLSAC 506



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 196/445 (44%), Gaps = 54/445 (12%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F+ L   +A   ++K+     + +T  + + +    +    L+++H   +      +  +
Sbjct: 378 FDVLRQMLAGGEDVKA-----DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELV 432

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
               ++S +   S+ YA  +F     K ++ +N LI G A+++  +  +   + M    +
Sbjct: 433 ANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGL 492

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
            P+  T   +  + + L  L LG+ +H  I+++ +E D FV + +  +Y+  G+      
Sbjct: 493 LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQA 552

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------------GMMPKKNVAS 232
           +FD   +K    S++ WN +I G  + G+  +A+ +F              MMP     S
Sbjct: 553 LFDAMEDK----SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACS 608

Query: 233 WV--------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
            +                          SLID + + G + ++ ++F  + EK   SW A
Sbjct: 609 LLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 668

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G+  +G A++A+ +F +M   G   +D T +  L+AC   G +  G+R  + +  + 
Sbjct: 669 MIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK-SS 727

Query: 327 FGLKGAIG--TALVDMYAKCGNIEAASLVFGE--TKEKDLLTWTAMIWGLAIHGRYEQAI 382
           FGLK  +     ++DM  + G ++ A  V  E  ++E D+  W +++    IH   E   
Sbjct: 728 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGE 787

Query: 383 QYFKKMMYSGTE-PDGTVFLAILTA 406
           +   K+     E P+  V L+ L A
Sbjct: 788 KVAAKLFELEPEKPENYVLLSNLYA 812



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 170/403 (42%), Gaps = 49/403 (12%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++   L     +   L+S    H  +  AL +FD    +NL  +N +IR  ++N  
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 110 FQSCISHFVFMLRL----SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            +        M+      +  P+  T   V    A    + LG+G+H   VK  ++ +  
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG-------YLRK- 217
           +   L DMY + G    A  +F    + N +++V+ WN ++ G S  G        LR+ 
Sbjct: 329 LNNALMDMYSKCGCITNAQMIF----KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQM 384

Query: 218 ----------AVELFGMMPKKNVASWV-----------------------SLIDGFMRKG 244
                      V +   +P     S++                       + +  + + G
Sbjct: 385 LAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCG 444

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            L  A  +F  +  K V SW A+I G +Q+ +   +L    QM  +G+  + FTV S LS
Sbjct: 445 SLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLS 504

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           AC+K+ +L  G  VH +I  N       +  +++ +Y  CG +     +F   ++K L++
Sbjct: 505 ACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVS 564

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           W  +I G   +G  ++A+  F++M+  G +  G   + +  AC
Sbjct: 565 WNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGAC 607



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/312 (23%), Positives = 129/312 (41%), Gaps = 51/312 (16%)

Query: 145 LSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           + +GR +H L+  S  +  D  +   +  MY   G    +  VFD    KN    +  WN
Sbjct: 100 IEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKN----LFQWN 155

Query: 204 VLINGCSKIGYLRKAVELF------------------------------------GMMPK 227
            +I+  S+     + +E F                                    G++ K
Sbjct: 156 AVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVK 215

Query: 228 KNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
             +   V    +L+  +   G +  A +LF+ MPE+ +VSW +MI  FS NG +E++  +
Sbjct: 216 TGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLL 275

Query: 284 FFQML----DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
             +M+    D     +  T+V+ L  CA+   +  G  VH +        +  +  AL+D
Sbjct: 276 LGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMD 335

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDG 397
           MY+KCG I  A ++F     K++++W  M+ G +  G         ++M+  G +   D 
Sbjct: 336 MYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADE 395

Query: 398 TVFLAILTACWY 409
              L  +  C++
Sbjct: 396 VTILNAVPVCFH 407



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 76/163 (46%), Gaps = 18/163 (11%)

Query: 268 INGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSA-----LSACAKVGALEAGVRVHNY 321
           I+ F + G+ +K+     + + D    ++ F +V       L A  K   +E G ++H  
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 109

Query: 322 ISC-----NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +S      ND      + T ++ MYA CG+ + +  VF   + K+L  W A+I   + + 
Sbjct: 110 VSGSTRLRND----DVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNE 165

Query: 377 RYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKLAL 417
            Y++ ++ F +M+ S T+  PD   +  ++ AC     V + L
Sbjct: 166 LYDEVLETFIEMI-STTDLLPDHFTYPCVIKACAGMSDVGIGL 207


>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 589

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 180/464 (38%), Positives = 268/464 (57%), Gaps = 53/464 (11%)

Query: 219 VELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           V+L  ++ +  VA+ V    +L+D + + GDL  A ++F++M  + V +W +++ G +Q 
Sbjct: 133 VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG 192

Query: 275 GEAEKALAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            E   ALA+F      FQ L +    N+ T+V+ LSACA++G L+ G+ VH +     FG
Sbjct: 193 TEPNLALALFHRLANSFQELPSREEPNEVTIVAVLSACAQIGLLKDGMYVHEF--AKKFG 250

Query: 329 LKG--AIGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQY 384
           L     +  +L+DMY+KCG++  A  VF   K +D  L+++ A I   ++HG    A++ 
Sbjct: 251 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRL 310

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M  +  EPDG  +LA+L  C +SG V   L  F+SMR    + P++KH+  +V+LL 
Sbjct: 311 FDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLG 365

Query: 445 RVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVL 476
           R G+ ++ Y                              ++ +  KL +L       YVL
Sbjct: 366 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 425

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           LSN+YA++ RW DV RVR  M+   ++K PG+SY E++G +H+F  G   H   +EI+  
Sbjct: 426 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 485

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LEDI++   E GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG T++++K 
Sbjct: 486 LEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKN 545

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L ICGDCH + K  SK   R IV+RD  RFH F+DG CSCRDYW
Sbjct: 546 LRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDYW 589


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 203/719 (28%), Positives = 350/719 (48%), Gaps = 106/719 (14%)

Query: 24  KPSNNITETH-IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
           +PS  ++  + I+  +    S   ++Q+HA I+   +          +S +S   ++ YA
Sbjct: 7   RPSFAVSAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYA 66

Query: 83  LSIFDHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           L++F   +P    I FN L+R L+ +   ++ I  +  +  +  R +R+++P + K+V+ 
Sbjct: 67  LNLFSSISPLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSK 126

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR-------------------- 181
           +S L  G  LH    K     D FV   L DMY   G+                      
Sbjct: 127 VSALFEGMELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTM 186

Query: 182 -----------GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR-------------- 216
                       AFK+F+E  + N     ++   +++ C + G +R              
Sbjct: 187 IERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDV 246

Query: 217 ---------------------KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
                                 A+E F  M  +N+    +++ G+ + G L  A  +F+Q
Sbjct: 247 RMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQ 306

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
              K +V WT MI+ ++++   ++AL +F +M  +G++ +  T++S +SAC  +G L+  
Sbjct: 307 TEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKA 366

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             VH Y   N       I  AL++MYAKCG ++AA  VF +   +++++W++MI   A+H
Sbjct: 367 KWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMH 426

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G    ++  F +M     EP+   F+ +L  C +SG V+     F SM  +Y I P ++H
Sbjct: 427 GEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEH 486

Query: 436 HTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLK 467
           +  +V+L  R     +  +  ++                            +  ++L+L+
Sbjct: 487 YGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLE 546

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--H 525
           P H  + VL+SNIYA E RW  V  +R +M+++ + K+ G S I++NG  H F  G   H
Sbjct: 547 PDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRH 606

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLI---- 580
           K + EI++KL ++++  +  GY+P    VL +++EE+++ L   HSEKLAL FGL+    
Sbjct: 607 KQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEK 666

Query: 581 QTTPGT--TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +   G+   I+IVK L +C DCH+  K  SK+ + EI++RD TRFH +KDG CSCRDYW
Sbjct: 667 EEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 200/655 (30%), Positives = 338/655 (51%), Gaps = 53/655 (8%)

Query: 27  NNITETHIISLIHSSNSTKQL-RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N++  + + +++S N   +L R++   +   NL + + I    +SS +    +D A+ +
Sbjct: 122 SNVSMCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSI----LSSYTKLGYVDDAIGL 177

Query: 86  FDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
            D         ++  +N L+ G A     +  I+    M    ++P+  +   + ++VA 
Sbjct: 178 LDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSISSLLQAVAE 237

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              L LG+ +H  I+++ + YD +V   L DMY++ G    A  VFD    KN    ++ 
Sbjct: 238 PGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKN----IVA 293

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP 257
           WN L++G S    L+ A  L   M K+ +     +W SL  G+   G  +KA ++  +M 
Sbjct: 294 WNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMK 353

Query: 258 EKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           EKGV    VSWTA+ +G S+NG    AL +F +M + GV  N  T+ + L     +  L 
Sbjct: 354 EKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLLKILGCLSLLH 413

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
           +G  VH +    +      + TALVDMY K G++++A  +F   K K L +W  M+ G A
Sbjct: 414 SGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYA 473

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
           + GR E+ I  F  M+ +G EPD   F ++L+ C  SG V+    +FD MR  Y I P++
Sbjct: 474 MFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTI 533

Query: 434 KHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQ 465
           +H + +V+LL R G   + +   Q                             ++ +L  
Sbjct: 534 EHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCKIHRDLELAEIAWKRLQV 593

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG- 524
           L+P + ++Y+++ N+Y+   RW+DV R+R LM+   ++    WS+I+++  VH F A G 
Sbjct: 594 LEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLWSWIQIDQTVHIFYAEGK 653

Query: 525 -HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQT 582
            H    +I+ +L  +++  ++ GY+P T  +  +I + EKE+ L  H+EKLA+ +GLI+ 
Sbjct: 654 THPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKLLMGHTEKLAMTYGLIKK 713

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
                I++VK   IC D H++ KY S +  REIVL++  R H+F+DG CSC D W
Sbjct: 714 KGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHHFRDGKCSCNDSW 768



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/419 (21%), Positives = 184/419 (43%), Gaps = 45/419 (10%)

Query: 50  IHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           IH  +I   L  S +R+ +  +       S+ +A  +FD    ++   +N ++     + 
Sbjct: 9   IHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRSG 68

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
           +++  +  F  M     +    T   + +  ++    + GR +H  +++ G+E +  +  
Sbjct: 69  NWEKAVELFREMQFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHGYVLRLGLESNVSMCN 128

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
            L  MY + GK   + KVF+   ++N S     WN +++  +K+GY+  A+ L   M   
Sbjct: 129 SLIVMYSRNGKLELSRKVFNSMKDRNLSS----WNSILSSYTKLGYVDDAIGLLDEMEIC 184

Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
             K ++ +W SL+ G+  K                               G ++ A+A+ 
Sbjct: 185 GLKPDIVTWNSLLSGYASK-------------------------------GLSKDAIAVL 213

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M  AG++ +  ++ S L A A+ G L+ G  +H YI  N       + T L+DMY K 
Sbjct: 214 KRMQIAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKT 273

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G +  A +VF     K+++ W +++ GL+     + A     +M   G +PD   + ++ 
Sbjct: 274 GYLPYARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLA 333

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
           +     G+ + AL+    M+ +  + P+V   T + +  S+ G     ++N+   F K+
Sbjct: 334 SGYATLGKPEKALDVIGKMK-EKGVAPNVVSWTAIFSGCSKNGN----FRNALKVFIKM 387


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 198/628 (31%), Positives = 327/628 (52%), Gaps = 85/628 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    + + ++ +LI   A++ +    +  F+ ML    +P++ T   +  +   L  
Sbjct: 211 VFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGS 270

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL--GKT-RGAFKVFDETPEKNKSESVLL 201
             LG+ LH L ++ G+E D+ V   L DMY +   G++   A +VF+  P+ N    V+ 
Sbjct: 271 FRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHN----VMA 326

Query: 202 WNVLING------------------------------------CSKIGYLRKAVELFGMM 225
           W  L++G                                    C+ +G      ++    
Sbjct: 327 WTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHC 386

Query: 226 PKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
            K N+A       +L+  +   G +++A   F+Q+ EK +VS++  ++G   +G +    
Sbjct: 387 VKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDG---DGRSNTYQ 443

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
               + ++ G+  + FT  S +SA A VG L  G R+H       FG   AIG +LV MY
Sbjct: 444 DYQIERMELGI--STFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMY 501

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           ++CG +  A  VF E  + ++++WT+MI GLA HG   +A++ F  M+ +G +P+   ++
Sbjct: 502 SRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYI 561

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNS--- 456
           A+L+AC ++G VK     F  M+  + + P ++H+  +V+LL R G  +D+  + N    
Sbjct: 562 AVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPC 621

Query: 457 -----------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                                  + +   ++QL+P+ P+ YVLLSN+YA  G W  VAR+
Sbjct: 622 QVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARI 681

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R+LM+ +++ K+ G S++ V+  +H F AG   H  A+EI++KLE ++   +  GY+P T
Sbjct: 682 RSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDT 741

Query: 552 EWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT-TIKIVKKLTICGDCHSLMKYASK 609
             VLH++ +E KE  L  HSEK+A+AFGLI  T  T  I+I K L +C DCHS +KY SK
Sbjct: 742 SVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSK 801

Query: 610 ISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            + REI+LRD+ RFH  KDG CSC +YW
Sbjct: 802 ATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 165/368 (44%), Gaps = 58/368 (15%)

Query: 147 LGRGLHCLIVKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           LGR L   ++++G  +E DA V   L  +Y +      A  VFD  P   +   ++ W  
Sbjct: 65  LGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRD--LVSWTA 122

Query: 205 LINGCSKIGYLRKAVELFG------MMPKK------------------------------ 228
           + +  S+ G   +A+ LFG      ++P                                
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 229 -----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                +V+   +LID F + GDL     +F+ + E+ VV WT +I  ++Q+G +++A+ +
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F  ML+ G + + +T+ S LSAC ++G+   G ++H+            +   LVDMYAK
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 344 CGN---IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE-QAIQYFKKMMYSGTEPDGTV 399
             N   +  A  VF    + +++ WTA++ G    G  + Q +  F KM+  G  P+   
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 400 FLAILTACWYSGQVKLALNFFDSMR--FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457
           + ++L AC   G         DS R    + ++ ++    VV N L  +  +S   + ++
Sbjct: 363 YSSMLKACANLGDQ-------DSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEAR 415

Query: 458 NSFTKLLQ 465
           ++F +L +
Sbjct: 416 HAFDQLYE 423



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 121/240 (50%), Gaps = 10/240 (4%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           SL+  + +   +  A  +F+ MP   + +VSWTAM +  S+NG   +AL +F + L+ G+
Sbjct: 89  SLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGL 148

Query: 293 RANDFTVVSALSAC--AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
             N FT+ +A  AC  +++  L  G  +        +G   ++G AL+DM+AK G++ A 
Sbjct: 149 LPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAM 208

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF    E+ ++ WT +I   A  G  ++A++ F  M+ +G +PD     ++L+AC   
Sbjct: 209 RRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTEL 268

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470
           G  +L      S+     +E        +V++ ++   + Q   N++  F ++    PKH
Sbjct: 269 GSFRLGQQLH-SLALRLGLESDSCVSCGLVDMYAK-SHNGQSLHNAREVFNRM----PKH 322



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 158/353 (44%), Gaps = 22/353 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N+IT + ++    +       RQIH   +  NL   + +   L+S  +   SI+ A   F
Sbjct: 359 NHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAF 418

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    KN+  F+  + G   ++ +Q        + R+ +  +  T+  +  + AS+ +L+
Sbjct: 419 DQLYEKNMVSFSGNLDGDGRSNTYQD-----YQIERMELGISTFTFGSLISAAASVGMLT 473

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ LH L +K+G   D  +   L  MY + G    A +VFDE  + N    V+ W  +I
Sbjct: 474 KGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHN----VISWTSMI 529

Query: 207 NGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-KGV 261
           +G +K GY  +A+ELF  M     K N  ++++++      G +K+  E F  M +  G+
Sbjct: 530 SGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGL 589

Query: 262 VS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           +     +  M++   ++G  E AL    +M     + +     + L AC     ++ G  
Sbjct: 590 IPRMEHYACMVDLLGRSGLVEDALDFINEM---PCQVDALVWKTLLGACKTHNNMDIGEI 646

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
             N++   +     A    L ++YA+ G  +  + +    ++K+L+    + W
Sbjct: 647 AANHVIQLE-PQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSW 698


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 208/657 (31%), Positives = 314/657 (47%), Gaps = 76/657 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R++H  +I +   +   +   LI+       I  A  +FD    ++   +N +I G  EN
Sbjct: 215 REVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFEN 274

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M    V P+ +T   V  +  +L    LGR +H  ++K+G   +  V 
Sbjct: 275 DVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREVHGYVIKTGFVAEVSVN 334

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  M+  +G    A  VF +   K+    ++ W  +I+G  K G   KAVE + +M  
Sbjct: 335 NSLIQMHSSVGCWDEAEMVFSKMEFKD----LVSWTAMISGYEKNGLPEKAVETYTIMEH 390

Query: 228 KNVA-----------------------------------SWV----SLIDGFMRKGDLKK 248
           + V                                    S+V    SLID + +   + K
Sbjct: 391 EGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSLIDMYSKCRCIDK 450

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F ++P K V+SWT++I G   N  + +AL  FFQ +   ++ N  T+VS LSACA+
Sbjct: 451 ALEVFHRIPNKNVISWTSIILGLRLNYRSFEAL-FFFQQMILSLKPNSVTLVSVLSACAR 509

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL  G  +H +      G  G +  AL+DMY +CG +E A   F    EKD+ +W  +
Sbjct: 510 IGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNSC-EKDVASWNIL 568

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           + G A  G+   A++ F KM+ S   PD   F ++L AC  SG V   L +F+SM   + 
Sbjct: 569 LTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDGLEYFESMEHKFH 628

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGY-------------------------QN---SQNSF 460
           I P++KH+  VV+LL R G+    Y                         QN    + + 
Sbjct: 629 IAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACRIYQNVELGELAA 688

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
             + ++  K    Y+LL N+YA  G+W +VARVR +M+   +  DPG S++EV G VH F
Sbjct: 689 QHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGCSWVEVAGQVHAF 748

Query: 521 EAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
             G   H   KEI++ LE         G     +    +I   K E    HSE+LA+AFG
Sbjct: 749 LTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIFCGHSERLAIAFG 808

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD 634
           LI T PGT I + K L +C +CH+ +K+ SK+ +R I +RDT +FH+FKDG CSC D
Sbjct: 809 LINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHFKDGVCSCGD 865



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 107/383 (27%), Positives = 188/383 (49%), Gaps = 44/383 (11%)

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
           R+   L+S       +  A  +F     ++L  +NVL+ G A+  +F   ++ +  ML +
Sbjct: 130 RLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWV 189

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            +RP+  T+P V ++   L  L+ GR +H  +++ G E D  V   L  MYV+ G    A
Sbjct: 190 GIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSA 249

Query: 184 FKVFDETPEKNKSESVLLWNVLING----------------------------------- 208
             VFD  P +++    + WN +I+G                                   
Sbjct: 250 RLVFDRMPRRDR----ISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK----GDLKKAGELFEQMPEKGVVSW 264
           C  +G  R   E+ G + K    + VS+ +  ++     G   +A  +F +M  K +VSW
Sbjct: 306 CEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSW 365

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           TAMI+G+ +NG  EKA+  +  M   GV  ++ T+ S LSACA +G L+ G+ +H +   
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADR 425

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
                   +  +L+DMY+KC  I+ A  VF     K++++WT++I GL ++ R  +A+ +
Sbjct: 426 TGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFF 485

Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
           F++M+ S  +P+    +++L+AC
Sbjct: 486 FQQMILS-LKPNSVTLVSVLSAC 507



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 157/349 (44%), Gaps = 43/349 (12%)

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LI  L      +  + H   M  L V     TY  + +        S G  +H  + K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
           +       +   L  M+V+ G    A+ VF +  E++    +  WNVL+ G +K GY  +
Sbjct: 123 TVTRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERD----LFSWNVLVGGYAKAGYFDE 178

Query: 218 AVELF------GMMP---------------------------------KKNVASWVSLID 238
           A+ L+      G+ P                                 + +V    +LI 
Sbjct: 179 ALNLYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALIT 238

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            +++ GD+  A  +F++MP +  +SW AMI+G+ +N    + L +FF M +  V  +  T
Sbjct: 239 MYVKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMT 298

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           + S +SAC  +G    G  VH Y+    F  + ++  +L+ M++  G  + A +VF + +
Sbjct: 299 MTSVISACEALGDERLGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            KDL++WTAMI G   +G  E+A++ +  M + G  PD     ++L+AC
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSAC 407



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 8/271 (2%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+  F+R GDL +A  +F +M E+ + SW  ++ G+++ G  ++AL ++ +ML  G+R 
Sbjct: 134 ALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + +T    L  C  +  L  G  VH ++    F     +  AL+ MY KCG+I +A LVF
Sbjct: 194 DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                +D ++W AMI G   +    + ++ F  M     +PD     ++++AC   G  +
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474
           L           Y I+        V N L ++      +  ++  F+K   ++ K   S+
Sbjct: 314 LGREV-----HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSK---MEFKDLVSW 365

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
             + + Y   G  +      T+M+   +  D
Sbjct: 366 TAMISGYEKNGLPEKAVETYTIMEHEGVVPD 396


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 214/686 (31%), Positives = 343/686 (50%), Gaps = 86/686 (12%)

Query: 30  TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSI 85
           T  H+ SL+ S      LR+   +HA+++L    A+S  +   LI+  S    +  AL +
Sbjct: 169 TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 228

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     +N   +  L+ GL++N      ++ F  M R  V P R      +++ A+L   
Sbjct: 229 FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAP 288

Query: 146 SLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
              R   C    S G + + FV  +LADMY + G    A +VFD+ P+K+     + W  
Sbjct: 289 LRARS--CTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKD----AVAWTA 342

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS-------------------WVS---------- 235
           +I+G +K G L  AV  F  M ++ +                     W+S          
Sbjct: 343 MIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKA 402

Query: 236 -----------LIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAM 283
                      LID + +  D++ A  + +  P    VVS T+MI+G+ +    E+AL +
Sbjct: 403 GFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVI 462

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           + ++   GV  N+FT  S +  CA    LE G ++H  +   D      +G+ LVDMY K
Sbjct: 463 YVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGK 522

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           CG I  +  +F E + +  + W A+I   A HG   +AIQ F +M+YSG  P+   F+++
Sbjct: 523 CGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSL 582

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------- 453
           LTAC ++G V   L +F SM+  + IEP  +H++ +++   R G+  + Y          
Sbjct: 583 LTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKP 642

Query: 454 ------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                             +  + +   L++L+P +   +V LS IYA+ G+W+DV  VR 
Sbjct: 643 NAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRK 702

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
           LM+   IKK PG+S+++ N   H F  E   H   K+I+ KLE++    +E+GY+P T +
Sbjct: 703 LMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSF 762

Query: 554 VLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK-LTICGDCHSLMKYASKIS 611
           +  N+++  KE  L  HSE++A+AF LI + P T   IVKK L IC DCH+  K+  K+ 
Sbjct: 763 LPCNLEDIAKERILRYHSERIAVAFALI-SMPATKPIIVKKNLRICIDCHTAFKFICKVE 821

Query: 612 QREIVLRD-TRFHYFKDGTCSCRDYW 636
           +R+I++RD +RFH+F +G CSC DYW
Sbjct: 822 RRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 111/398 (27%), Positives = 158/398 (39%), Gaps = 55/398 (13%)

Query: 30  TETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSI 85
           T  H+ SL+ S      LR+   +HA+++L    A+S  +   LI+  S    +  AL +
Sbjct: 19  TTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRL 78

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     +N   +  L+ GL++N      ++ F  M R  V P RL Y   +K   +L   
Sbjct: 79  FAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYE--TKFHNTLGPK 136

Query: 146 SLGRGLHC-----LIVK-------SGVEYDAFVRVHLADMYVQLGKT----RGAFKVFDE 189
                 HC     L+VK             A   VHLA +    G+     RG       
Sbjct: 137 HTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARL 196

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
                 + S  L N LI   S    L  A+ LF  MP++N  SW                
Sbjct: 197 VLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSW---------------- 240

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
                          T +++G SQN     ALA F  M  AGV    F + SA  A A  
Sbjct: 241 ---------------TTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARA-AAA 284

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
                  R     +   F  +  + + L DMY+KCG +  A  VF +  +KD + WTAMI
Sbjct: 285 LGAPLRARSCTASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMI 344

Query: 370 WGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTA 406
            G A +G  E A+  F+ M   G    D  VF ++L+A
Sbjct: 345 DGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSA 382


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 186/586 (31%), Positives = 299/586 (51%), Gaps = 74/586 (12%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           MLRL ++P+  T+PF+ K+ + L     G  +H  +VK G +   F+   L  MY +  K
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKKNVASWVSLID 238
              + +VFDE P+KN     + W+ +I  C +    ++   LF  M+ + +  S  ++++
Sbjct: 61  YELSRQVFDEMPDKN----AVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILN 116

Query: 239 G-----------------------------------FMRKGDLKKAGELFEQMPEKGVVS 263
                                               F R G ++ A +LF+ +  K +V+
Sbjct: 117 AMACVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVT 176

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W   I  + +     +AL +  QM+  G+  +  T++  + AC+ + + +    VH  I+
Sbjct: 177 WATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIIT 236

Query: 324 CNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              F     A+ TAL+D+Y KCG++  A  VF   +E++++TW+AMI G  +HG   +A+
Sbjct: 237 TGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREAL 296

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
             F +M  S  +PD   F++IL+AC +SG V      F+SM  D+ + P  +H+  +V++
Sbjct: 297 NLFDQMKAS-VKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDI 355

Query: 443 LSRVGQDSQGYQNSQNSFTK----------------------------LLQLKPKHPSSY 474
           L R G+  +     +    +                            L  L P +   Y
Sbjct: 356 LGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRY 415

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIH 532
           V+L NIY   G+ K+   +RTLM+ R +KK  G+S IE+   ++ F AG   H     I+
Sbjct: 416 VILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIY 475

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
           S+LE +M   R++GY P   +VLH++ EE KE  L  HSEKLA+ FGL+   PG+ I+I 
Sbjct: 476 SELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIR 535

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K L +CGDCH+  K+ SK++ REIV+RD  RFH+FK+G CSCRDYW
Sbjct: 536 KNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 105/238 (44%), Gaps = 18/238 (7%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD    K+L  +   I    +       +     M+   + P+ +T   V ++
Sbjct: 159 VEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRA 218

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETPEKNKS 196
            ++L+   L   +H  I+ +G  Y+  + V   L D+YV+ G    A KVFD   E+N  
Sbjct: 219 CSTLASFQLAHIVHG-IITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERN-- 275

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELF 253
             ++ W+ +I+G    G+ R+A+ LF  M    K +  ++VS++      G + +  E F
Sbjct: 276 --IITWSAMISGYGMHGWGREALNLFDQMKASVKPDHITFVSILSACSHSGLVAEGWECF 333

Query: 254 EQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             M     V+     +  M++   + G+ ++A     +M    VR N     + L AC
Sbjct: 334 NSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERM---PVRPNAAVWGALLGAC 388


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 183/546 (33%), Positives = 288/546 (52%), Gaps = 84/546 (15%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +RP+   +  + K+ A+L  +  GR +HC  + S    D  V+  L DMY          
Sbjct: 38  LRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDEVVKSSLVDMY---------- 87

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
                                    +K G L  A  +F  +  KN  SW +++ G+ + G
Sbjct: 88  -------------------------AKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSG 122

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL- 303
             ++A ELF  +P K + SWTA+I+GF Q+G+  +A ++F +M    V   D  V+S++ 
Sbjct: 123 RKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIV 182

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA + A  AG +VH              G AL+DMYAKC ++ AA  +F   + +D++
Sbjct: 183 GACANLAASIAGRQVH--------------GNALIDMYAKCSDVIAAKDIFSRMRHRDVV 228

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +WT++I G+A HG+ E+A+  +  M+  G +P+   F+ ++ AC + G V+     F SM
Sbjct: 229 SWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSM 288

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------YQNSQNSFTKLLQ---------- 465
             DY I PS++H+T +++LL R G   +         +   + ++  LL           
Sbjct: 289 TKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQM 348

Query: 466 -----------LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
                       K K PS+Y+LLSNIYA+   W  V+  R  +    ++KDPG S +EV 
Sbjct: 349 GIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVR 408

Query: 515 GHVHRFEAG--GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNIKE-EKEEALGCHS 570
                F AG   H L ++I   L+ +    R   GY+P T W+LH++ E EKE+ L  HS
Sbjct: 409 KETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHS 468

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGT 629
           E+ A+A+GL++  PGT I+IVK L +CGDCH ++K+ S+I++REI++RD TR+H+FK G 
Sbjct: 469 ERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGK 528

Query: 630 CSCRDY 635
           CSC D+
Sbjct: 529 CSCNDF 534



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 94/174 (54%), Gaps = 13/174 (7%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKAL-AMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           MP +  ++W +++   +Q   + K L         +G+R +DF   + + ACA +G+++ 
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G +VH +   +++     + ++LVDMYAKCG + +A  VF   + K+ ++WTAM+ G A 
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 375 HGRYEQAIQYFK----KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
            GR E+A++ F+    K +YS T        A+++    SG+   A + F  MR
Sbjct: 121 SGRKEEALELFRILPVKNLYSWT--------ALISGFVQSGKGLEAFSVFTEMR 166


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 174/538 (32%), Positives = 290/538 (53%), Gaps = 56/538 (10%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T + I +L+ +  +T  L Q+HA+II   L     I +Q ++  +   +  Y  S+F+  
Sbjct: 24  TTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGV 83

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           +  +  ++N  I+G +EN      +S F+ M R    P++ TYP + K+ + +  +  G 
Sbjct: 84  SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 143

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--------------- 194
             H   V+ GV  D FV   L D+Y + G+   A KVFDE  E+N               
Sbjct: 144 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFS 203

Query: 195 ------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR 242
                         ++ + WN +I+G  K G LR A ++F  MP +NV S+ ++IDG+ +
Sbjct: 204 DLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMIDGYAK 263

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            GD+  A  +FE+ PE+ VV+W+A+I+G+ QNG+  +A+ +F +M    V+ ++F +VS 
Sbjct: 264 SGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSL 323

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKD 361
           +SAC+++G+LE    V +Y+  +   +  A +  AL+DM AKCG+++ A+ +F E  ++D
Sbjct: 324 MSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRD 383

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           L+++ +M+ GL+IHG   QA+  F +M+  G  PD   F  ILTAC  +G V     +F+
Sbjct: 384 LISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFE 443

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS---------------------- 459
           SM+ DY I PS  H+  +V+LL R G+  + Y+  ++                       
Sbjct: 444 SMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDI 503

Query: 460 ------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                   +L +L+P++  +YVLLSNIYAA  +W DV+ +R  M+ R I+K PG S+I
Sbjct: 504 ELGEVVADQLFELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 197/579 (34%), Positives = 301/579 (51%), Gaps = 77/579 (13%)

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
           R+ + F++    S +L    R +H  +  S  E DAF+   L  +Y + G    A KVFD
Sbjct: 52  RVYHAFITACAQSKNLDD-ARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFD 110

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------- 227
           +  +K+    ++ W  LI G ++     +A+ L   M K                     
Sbjct: 111 KMRKKD----MVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYA 166

Query: 228 ------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                             ++V    +L+D + R G +  A  +F+++  K  VSW A+I+
Sbjct: 167 DSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALIS 226

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           GF++ G+ E AL +F +M   G  A  FT  S  S  A +GALE G  VH ++  +   L
Sbjct: 227 GFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKL 286

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +G  ++DMYAK G++  A  VF     KDL+TW +M+   A +G  ++A+ +F++M 
Sbjct: 287 TAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMR 346

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-- 447
            SG   +   FL ILTAC + G VK   ++FD ++ +Y +EP ++H+  VV+LL R G  
Sbjct: 347 KSGIYLNQITFLCILTACSHGGLVKEGKHYFDMIK-EYNLEPEIEHYVTVVDLLGRAGLL 405

Query: 448 -----------------------QDSQGYQNS---QNSFTKLLQLKPKHPSSYVLLSNIY 481
                                     + ++N+   Q +   + QL P      VLL NIY
Sbjct: 406 NYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIY 465

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A+ G W   ARVR +M+   +KK+P  S++E+   VH F A    H  A+EI+   ++I 
Sbjct: 466 ASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIYKMWDEIS 525

Query: 540 AGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              R++GY+P  ++VL ++ E++ EA L  HSEK+ALAF LIQ   G TI+I+K + ICG
Sbjct: 526 MKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIMKNIRICG 585

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCHS  KY SK+ +REIV+RDT RFH+F +G+CSC DYW
Sbjct: 586 DCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 163/393 (41%), Gaps = 49/393 (12%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P+  +    I +   S N     R+IH  +        + +   LI       S+  A  
Sbjct: 49  PTPRVYHAFITACAQSKN-LDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHK 107

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    K++  +  LI G A+N      I     ML+   +PN  T+  + K+  + + 
Sbjct: 108 VFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYAD 167

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             +G  +H L VK     D +V   L DMY + GK   A  VFD+   KN     + WN 
Sbjct: 168 SGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNG----VSWNA 223

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----------------------WV-------- 234
           LI+G ++ G    A+ +F  M +    +                      WV        
Sbjct: 224 LISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSR 283

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +++D + + G +  A ++FE++  K +V+W +M+  F+Q G  ++A++ F 
Sbjct: 284 QKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFE 343

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAK 343
           +M  +G+  N  T +  L+AC+  G ++ G   H +    ++ L+  I     +VD+  +
Sbjct: 344 EMRKSGIYLNQITFLCILTACSHGGLVKEG--KHYFDMIKEYNLEPEIEHYVTVVDLLGR 401

Query: 344 CGNIE-AASLVFGETKEKDLLTWTAMIWGLAIH 375
            G +  A   +F    E     W A++    +H
Sbjct: 402 AGLLNYALVFIFKMPMEPTAAVWGALLAACRMH 434



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 129/323 (39%), Gaps = 36/323 (11%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           QIHA  +  +      + + L+   +    +D A ++FD    KN   +N LI G A   
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             ++ +  F  M R        TY  +   +A +  L  G+ +H  +VKS  +  AFV  
Sbjct: 233 DGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGN 292

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            + DMY + G    A KVF+    K+    ++ WN ++   ++ G  ++AV  F  M K 
Sbjct: 293 TMLDMYAKSGSMIDARKVFERVLNKD----LVTWNSMLTAFAQYGLGKEAVSHFEEMRKS 348

Query: 229 ----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKA 280
               N  +++ ++      G +K+    F+ + E      +  +  +++   + G    A
Sbjct: 349 GIYLNQITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYA 408

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKV-GALEAGVRVHNYISCNDFGL---------K 330
           L   F+M               +   A V GAL A  R+H       F            
Sbjct: 409 LVFIFKM--------------PMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDD 454

Query: 331 GAIGTALVDMYAKCGNIEAASLV 353
                 L ++YA  G+ +AA+ V
Sbjct: 455 SGPPVLLYNIYASTGHWDAAARV 477



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 1/120 (0%)

Query: 288 LDAGVRANDFTVVSA-LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           LD+G  A    V  A ++ACA+   L+   ++H +++ + F     +  +L+ +Y KCG+
Sbjct: 42  LDSGELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGS 101

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +  A  VF + ++KD+++WT++I G A +    +AI     M+    +P+G  F ++L A
Sbjct: 102 VVEAHKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKA 161


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 201/673 (29%), Positives = 335/673 (49%), Gaps = 89/673 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +H  +      A   + T L+++     +   A  +FD    +N+  +  L+ G   N
Sbjct: 98  RAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLN 157

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
           S     +  FV ML +   P+  T      +  +   + LG+ +H   +K G E    + 
Sbjct: 158 SQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMG 217

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY-LRKAVELF---- 222
             L  +Y +LG    A + F   PEKN    V+ W  +I+ C++    +   + LF    
Sbjct: 218 NSLCSLYAKLGSLDSALRAFWRIPEKN----VITWTTMISACAEDEECVELGLSLFIDML 273

Query: 223 --GMMPKKNVASWVSLIDG---------------------------------FMRKGDLK 247
             G+MP +   + V  + G                                 ++RKG+  
Sbjct: 274 MDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETD 333

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-----------ALAMFFQMLDAGVRAND 296
           +A  LFEQM +  +++W AMI+G++Q  ++ K           AL +F  +  + ++ + 
Sbjct: 334 EAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDL 393

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356
           FT  S LS C+ + ALE G ++H     + F     + +ALV+MY KCG I+ A+  F E
Sbjct: 394 FTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLE 453

Query: 357 TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              +  +TWT+MI G + HG+ ++AIQ F++M  +G  P+   F+++L+AC Y+G V+ A
Sbjct: 454 MPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEA 513

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------------------- 454
            ++FD M+ +Y IEP V H+  ++++  R+G+    +                       
Sbjct: 514 EHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCR 573

Query: 455 ---NSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
              N + +F    KLL+LKPK   +Y+LL N+Y +  RW+DVARVR LM++  +      
Sbjct: 574 SHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDR 633

Query: 509 SYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL 566
           S+I +   V+ F A    H  A E++  LE+++  A+  GY P     L + +++++ A 
Sbjct: 634 SWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAA 693

Query: 567 GC---HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
           G    HSE+LA+A GL+QT PG T+++ K +T+C DCHS +K  S +  REI++RD+ R 
Sbjct: 694 GSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRL 753

Query: 623 HYFKDGTCSCRDY 635
           H FKDG CSC D+
Sbjct: 754 HKFKDGRCSCGDF 766



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 111/210 (52%), Gaps = 9/210 (4%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           L++ C ++G L  A  + G M K    +      SL++ +MR G  + A  LF+ MPE+ 
Sbjct: 84  LLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERN 143

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VV+WTA++ G++ N +    L +F +ML+ G   + +T+ + L+AC     ++ G +VH 
Sbjct: 144 VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHG 203

Query: 321 YISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR- 377
           Y     +G +   ++G +L  +YAK G++++A   F    EK+++TWT MI   A     
Sbjct: 204 YAI--KYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEEC 261

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            E  +  F  M+  G  P+     ++++ C
Sbjct: 262 VELGLSLFIDMLMDGVMPNEFTLTSVMSLC 291



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 138/329 (41%), Gaps = 62/329 (18%)

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           P + + V  +  L   R +H  + K+G   D FV   L + Y++ G  R A ++FD  PE
Sbjct: 83  PLLHRCV-EMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPE 141

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK------------------- 227
           +N    V+ W  L+ G +        +E+F      G  P                    
Sbjct: 142 RN----VVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDL 197

Query: 228 -KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
            K V  +              SL   + + G L  A   F ++PEK V++WT MI+  ++
Sbjct: 198 GKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAE 257

Query: 274 NGEA-EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY---ISCNDFGL 329
           + E  E  L++F  ML  GV  N+FT+ S +S C     L  G +V  +   I C     
Sbjct: 258 DEECVELGLSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCET--- 314

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG-----------LAIHGRY 378
              +  + + +Y + G  + A  +F + ++  ++TW AMI G           L    R 
Sbjct: 315 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRG 374

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            QA+  F+ +  S  +PD   F +IL+ C
Sbjct: 375 FQALTIFRDLKRSVMKPDLFTFSSILSVC 403



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 61/130 (46%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           ML  G        V  L  C ++G+L A   VH +++    G    + T+LV+ Y +CG 
Sbjct: 69  MLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGA 128

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
              A  +F    E++++TWTA++ G  ++ +    ++ F +M+  G  P      A L A
Sbjct: 129 ARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNA 188

Query: 407 CWYSGQVKLA 416
           C  S  V L 
Sbjct: 189 CLASCDVDLG 198


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 193/566 (34%), Positives = 289/566 (51%), Gaps = 76/566 (13%)

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           S L   + LHC  +K    Y+  V       Y + G    A +VF       +S++V  W
Sbjct: 159 SFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGI----RSKTVNSW 214

Query: 203 NVLING-----------------------------------CSKIGYLRKAVELFGMMPK 227
           N LI G                                   CSK+  LR   E+ G + +
Sbjct: 215 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 274

Query: 228 ----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
               +++  ++S++  ++  G+L     LF+ M +K +VSW  +I G+ QNG  ++AL +
Sbjct: 275 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 334

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F QM+  G++    +++    AC+ + +L  G   H Y   +       I  +L+DMYAK
Sbjct: 335 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 394

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G+I  +S VF   KEK   +W AMI G  IHG  ++AI+ F++M  +G  PD   FL +
Sbjct: 395 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 454

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS------------- 450
           LTAC +SG +   L + D M+  + ++P++KH+  V+++L R GQ               
Sbjct: 455 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 514

Query: 451 ----------------QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                           Q  +  +    KL +L+P+ P +YVLLSN+YA  G+W+DV +VR
Sbjct: 515 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 574

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA--KEIHSKLEDIMAGAREQGYMPGTE 552
             M   S++KD G S+IE+N  V  F  G   L   +EI S    +     + GY P T 
Sbjct: 575 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 634

Query: 553 WVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            V H++ +EEK E L  HSEKLAL +GLI+T+ GTTI++ K L IC DCH+  K  SK+ 
Sbjct: 635 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 694

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
           +REIV+RD  RFH+FK+G CSC DYW
Sbjct: 695 EREIVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/445 (22%), Positives = 196/445 (44%), Gaps = 54/445 (12%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F+ L   +A   ++K+     + +T  + + +    +    L+++H   +      +  +
Sbjct: 128 FDVLRQMLAGGEDVKA-----DEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELV 182

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
               ++S +   S+ YA  +F     K ++ +N LI G A+++  +  +   + M    +
Sbjct: 183 ANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGL 242

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
            P+  T   +  + + L  L LG+ +H  I+++ +E D FV + +  +Y+  G+      
Sbjct: 243 LPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQA 302

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------------GMMPKKNVAS 232
           +FD   +K    S++ WN +I G  + G+  +A+ +F              MMP     S
Sbjct: 303 LFDAMEDK----SLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACS 358

Query: 233 WV--------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
            +                          SLID + + G + ++ ++F  + EK   SW A
Sbjct: 359 LLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNA 418

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G+  +G A++A+ +F +M   G   +D T +  L+AC   G +  G+R  + +  + 
Sbjct: 419 MIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK-SS 477

Query: 327 FGLKGAIG--TALVDMYAKCGNIEAASLVFGE--TKEKDLLTWTAMIWGLAIHGRYEQAI 382
           FGLK  +     ++DM  + G ++ A  V  E  ++E D+  W +++    IH   E   
Sbjct: 478 FGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGE 537

Query: 383 QYFKKMMYSGTE-PDGTVFLAILTA 406
           +   K+     E P+  V L+ L A
Sbjct: 538 KVAAKLFELEPEKPENYVLLSNLYA 562



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 174/420 (41%), Gaps = 53/420 (12%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+  T   V    A    + LG+G+H   VK  ++ +  +   L DMY + G    A  +
Sbjct: 40  PDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMI 99

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIG-------YLRK-----------AVELFGMMPKK 228
           F    + N +++V+ WN ++ G S  G        LR+            V +   +P  
Sbjct: 100 F----KMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVC 155

Query: 229 NVASWV-----------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
              S++                       + +  + + G L  A  +F  +  K V SW 
Sbjct: 156 FHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWN 215

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           A+I G +Q+ +   +L    QM  +G+  + FTV S LSAC+K+ +L  G  VH +I  N
Sbjct: 216 ALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRN 275

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
                  +  +++ +Y  CG +     +F   ++K L++W  +I G   +G  ++A+  F
Sbjct: 276 WLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVF 335

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           ++M+  G +  G   + +  AC     ++L      +    + +E        ++++ ++
Sbjct: 336 RQMVLYGIQLCGISMMPVFGACSLLPSLRLGRE-AHAYALKHLLEDDAFIACSLIDMYAK 394

Query: 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            G  +Q    S   F     LK K  +S+  +   Y   G  K+  ++   MQR     D
Sbjct: 395 NGSITQ----SSKVFNG---LKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPD 447



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 6/157 (3%)

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQML----DAGVRANDFTVVSALSACAKVGALEA 314
           +  VSW +MI  FS NG +E++  +  +M+    D     +  T+V+ L  CA+   +  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G  VH +        +  +  AL+DMY+KCG I  A ++F     K++++W  M+ G + 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 375 HGRYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWY 409
            G         ++M+  G +   D    L  +  C++
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 210/708 (29%), Positives = 348/708 (49%), Gaps = 107/708 (15%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           NNI   H  +LI SS      R++   I   NLF+ + +      S  L +        F
Sbjct: 42  NNIV--HAYALIRSSIYA---RRVFDGIPQPNLFSWNNLLLAYSKSGHLSE----MERTF 92

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRLTYPFVSKSVASLSLL 145
           +    ++   +NVLI G + +    + +  +  M++  S    R+T   + K  +S   +
Sbjct: 93  EKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHV 152

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK---------- 195
           SLG+ +H  ++K G E    V   L DMY ++G    A KVF    ++N           
Sbjct: 153 SLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGL 212

Query: 196 ----------------SESVLLWNVLINGCSKIGYLRKAVELFGMMP------------- 226
                            +  + W+ +I G ++ G  ++A+E F  M              
Sbjct: 213 LACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQYPFGS 272

Query: 227 ----------------------KKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
                                 + N+   +    +LID + +   L  A  +F++M +K 
Sbjct: 273 VLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKN 332

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSWTAM+ G+ Q G A +A+ +F  M  +G+  + +T+  A+SACA + +LE G + H 
Sbjct: 333 VVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHG 392

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
                       +  +LV +Y KCG+I+ ++ +F E   +D ++WTAM+   A  GR  +
Sbjct: 393 KAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQFGRAVE 452

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AIQ F KM+  G +PDG     +++AC  +G V+    +F+ M  +Y I PS  H++ ++
Sbjct: 453 AIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGHYSCMI 512

Query: 441 NLLSRVG--QDSQGYQNSQN--------------------------SFTKLLQLKPKHPS 472
           +L SR G  +++ G+ N                             +   L++L P HP+
Sbjct: 513 DLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPA 572

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKE 530
            Y LLS+IYA++G+W  VA++R  M+ ++++K+PG S+I+  G +H F A       + +
Sbjct: 573 GYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESSPYSDQ 632

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I++KLE++     + GY P T +V H+++E  K + L CHSE+LA+AFGLI    G  I+
Sbjct: 633 IYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPSGLPIR 692

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + K L +C DCH+  K+ S ++ REI++RD  RFH FKDGTCSC D+W
Sbjct: 693 VGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 207/495 (41%), Gaps = 76/495 (15%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL-------- 94
           +++ ++ IH  II       + +   ++ + +L +S  YA  +FD     NL        
Sbjct: 18  ASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLL 77

Query: 95  ------HI-----------------FNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNRL 130
                 H+                 +NVLI G + +    + +  +  M++  S    R+
Sbjct: 78  AYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRV 137

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T   + K  +S   +SLG+ +H  ++K G E    V   L DMY ++G    A KVF   
Sbjct: 138 TLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGL 197

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
            ++N     +++N L+ G    G +  A++LF  M K +V SW ++I G  + G  K+A 
Sbjct: 198 DDRN----TVMYNTLMGGLLACGMIEDALQLFRGMEKDSV-SWSAMIKGLAQNGMEKEAI 252

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           E F +M  +                               G++ + +   S L AC  +G
Sbjct: 253 ECFREMKIE-------------------------------GLKMDQYPFGSVLPACGGLG 281

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           A+  G ++H  I   +      +G+AL+DMY KC  +  A  VF   K+K++++WTAM+ 
Sbjct: 282 AINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVV 341

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G    GR  +A++ F  M  SG +PD       ++AC     ++    F         I 
Sbjct: 342 GYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEGSQFHGKA-----IT 396

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
             + H+  V N L  +        +S   F    ++  +   S+  + + YA  GR  + 
Sbjct: 397 AGLIHYITVSNSLVTLYGKCGDIDDSTRLFN---EMNVRDEVSWTAMVSAYAQFGRAVEA 453

Query: 491 ARVRTLMQRRSIKKD 505
            ++   M +  +K D
Sbjct: 454 IQLFDKMVQLGLKPD 468


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  313 bits (803), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 211/651 (32%), Positives = 332/651 (50%), Gaps = 71/651 (10%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP-KN 93
           +SL+H+       + IH   I   L A+  + T L+   S  K +  A  +F      KN
Sbjct: 147 LSLLHTG------KMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKN 200

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
              +  ++ G A+N      I  F  M    +  N  T+P +  +  S+S  + GR +H 
Sbjct: 201 YVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHG 260

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            I+ SG   + +V+  L DMY + G    A  + D      + + V+ WN +I GC   G
Sbjct: 261 CIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTM----EIDDVVCWNSMIVGCVTHG 316

Query: 214 YLRKAVELFGMMPKKNV-------------------------------------ASWVS- 235
           Y+ +A+ LF  M  +++                                        VS 
Sbjct: 317 YMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSN 376

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            L+D + ++G+L  A ++F ++ +K V+SWT+++ G+  NG  EKAL +F  M  A V  
Sbjct: 377 ALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDL 436

Query: 295 NDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           + F V    SACA++  +E G +VH N+I  +   L  A   +L+ MYAKCG +E A  V
Sbjct: 437 DQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSA-ENSLITMYAKCGCLEDAIRV 495

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQ 412
               + +++++WTA+I G A +G  E    YF+ M    G +P    +  ++     +G+
Sbjct: 496 XDSMETRNVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGK 555

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS--RV-GQDSQGYQNSQNSFTKLLQLKPK 469
           +  A +  + M     +EP     T+  +LLS  RV G    G +  +N    L++L+P 
Sbjct: 556 INEAEHLLNRMD----VEPDA---TIWKSLLSACRVHGNLELGERAGKN----LIKLEPS 604

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKL 527
           +   YVLLSN+++  GRW+D A +R  M+   I ++PG+S+IE+   VH F  E   H L
Sbjct: 605 NSLPYVLLSNMFSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPL 664

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
           A EI+SK++++M   +E G++P   + L ++ EE KE +L  HSEKLA+AFGL+    G 
Sbjct: 665 AAEIYSKIDEMMILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGA 724

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
            I+I K L +CGDCHS MKY S I +R I+LRD   FH+F +G CSC D+W
Sbjct: 725 PIRIFKNLRVCGDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 109/431 (25%), Positives = 187/431 (43%), Gaps = 77/431 (17%)

Query: 47  LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV------- 99
           +R IH   I H  ++S+  + QL+S  S +  +D A  +FD    ++ + +N+       
Sbjct: 25  IRCIHG--IAH--YSSNLDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYAN 80

Query: 100 ------------------------LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
                                   L+ G  +N      +  F  M     +P++ T   V
Sbjct: 81  LGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSV 140

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
            ++ ++LSLL  G+ +HC  +K  +E + FV   L DMY +      A  +F   P++  
Sbjct: 141 LRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDR-- 198

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--------------------------- 228
            ++ + W  ++ G ++ G   KA++ F  M  +                           
Sbjct: 199 -KNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQ 257

Query: 229 ------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
                       NV    +L+D + + GDL  A  + + M    VV W +MI G   +G 
Sbjct: 258 VHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGY 317

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            E+AL +F +M +  +R +DFT  S L + A    L+ G  VH+      F     +  A
Sbjct: 318 MEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNA 377

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LVDMYAK GN+  A  VF +  +KD+++WT+++ G   +G +E+A+Q F  M  +  + D
Sbjct: 378 LVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLD 437

Query: 397 GTVFLAILTAC 407
             V   + +AC
Sbjct: 438 QFVVACVFSAC 448



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 99/436 (22%), Positives = 172/436 (39%), Gaps = 84/436 (19%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           AI     +++    SN+ T   I++   S ++    RQ+H  II      +  + + L+ 
Sbjct: 220 AIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVD 279

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
             +    +  A  I D     ++  +N +I G   + + +  +  F  M    +R +  T
Sbjct: 280 MYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFT 339

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           YP V KS+AS   L +G  +H L +K+G +    V   L DMY + G    A  VF++  
Sbjct: 340 YPSVLKSLASCKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKIL 399

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--------------------- 230
           +K+    V+ W  L+ G    G+  KA++LF  M    V                     
Sbjct: 400 DKD----VISWTSLVTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIE 455

Query: 231 ------ASWV------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                 A+++            SLI  + + G L+ A  + + M  + V+SWTA+I G++
Sbjct: 456 FGRQVHANFIKSSAGSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYA 515

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG  E   + F  M                    KV                 +G+K A
Sbjct: 516 QNGLVETGQSYFESM-------------------EKV-----------------YGIKPA 539

Query: 333 IG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
                 ++D+  + G I EA  L+     E D   W +++    +HG  E   +  K ++
Sbjct: 540 SDRYACMIDLLGRAGKINEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLI 599

Query: 390 YSGTEPDGTVFLAILT 405
               EP  ++   +L+
Sbjct: 600 --KLEPSNSLPYVLLS 613


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 210/616 (34%), Positives = 311/616 (50%), Gaps = 82/616 (13%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL-GRGLHCLI 155
           +   I G A+++     +S F  MLRL +RPN  T+P   K+ AS    S  G  LH L 
Sbjct: 87  YTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALA 146

Query: 156 VKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-------- 206
           ++ G +  DAFV     DMY + G    A ++FDE P +N    V+ WN ++        
Sbjct: 147 LRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRN----VVAWNAVMTNAVLDGR 202

Query: 207 ---------------------------NGCSKIGYLRKAVELFGMMPK----KNVASWVS 235
                                      N C+ +  L    + +G + K    K+V+   S
Sbjct: 203 PLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNS 262

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           ++D + +   + KA  +F+ M  +  VSW +M+  ++QNG  E+A  ++     AG    
Sbjct: 263 VVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPT 322

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           DF V S L+ CA +  L+ G  +H     SC D  +   + +ALVDMY KCG IE A  V
Sbjct: 323 DFMVSSVLTTCAGLLGLDLGRALHAVAVRSCIDSNI--FVASALVDMYGKCGGIEDAEQV 380

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTACWYSGQ 412
           F E  +++L+TW AMI G A  G    A+  F KM M   T P+    + +LTAC   G 
Sbjct: 381 FFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGL 440

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-------------- 458
            K     F +M++ + IEP ++H+  VV+LL R G + + Y+  Q               
Sbjct: 441 TKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALL 500

Query: 459 --------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                         +  KL +L P+   ++VLLSN+ A+ GRW +   VR  M+   IKK
Sbjct: 501 GGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKK 560

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEK 562
           DPG S+I     VH F+A    H + +EI + L  +    +  GYMP T++ L++++EE+
Sbjct: 561 DPGRSWITWKNVVHVFQAKDTTHDMNREIQALLAKLKGQMQAAGYMPDTQYALYDLEEEE 620

Query: 563 EEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR 621
           +E+ +  HSEKLALAFGLI   PG  I+I+K L IC DCH   K+ S I+ REI++RD  
Sbjct: 621 KESEVFQHSEKLALAFGLICIPPGIPIRIMKNLRICVDCHRAFKFISGIAGREIIVRDNN 680

Query: 622 -FHYFKDGTCSCRDYW 636
            FH+FK+  CSC+DYW
Sbjct: 681 MFHHFKNYECSCKDYW 696



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 14/214 (6%)

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
           + +  A ++FD    +N   +  ++   A+N   +     ++   R    P       V 
Sbjct: 271 RCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLGARRAGEEPTDFMVSSVL 330

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            + A L  L LGR LH + V+S ++ + FV   L DMY + G    A +VF E P++N  
Sbjct: 331 TTCAGLLGLDLGRALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRN-- 388

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF-----GMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
             ++ WN +I G + IG    A+ +F     G     N  + V+++    R G  K+  E
Sbjct: 389 --LVTWNAMIGGYAHIGDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYE 446

Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKA 280
           LF+ M      E  +  +  +++   + G  E+A
Sbjct: 447 LFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERA 480



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 81/168 (48%), Gaps = 14/168 (8%)

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA-G 315
           P   VVS+TA I+G +Q+    +AL+ F  ML  G+R NDFT  SA  A A      A G
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139

Query: 316 VRVH------NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            ++H       Y+  + F     +  A +DMY K G +  A  +F E   ++++ W A++
Sbjct: 140 TQLHALALRFGYLPDDAF-----VSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVM 194

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
               + GR  + ++ +  +  +G  P+     A   AC  +G   L+L
Sbjct: 195 TNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNAC--AGMTNLSL 240


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 193/660 (29%), Positives = 330/660 (50%), Gaps = 75/660 (11%)

Query: 48   RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            +Q+HA        ++ +I   L++  +    I+ AL+ F     +N+ ++NV++      
Sbjct: 392  QQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLL 451

Query: 108  SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
               ++    F  M    + PN+ TYP + K+   L  L LG  +H  I+K+  + +A+V 
Sbjct: 452  DDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVC 511

Query: 168  VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
              L DMY +LGK   A+ +      K+    V+ W  +I G ++  +  KA+  F  M  
Sbjct: 512  SVLIDMYAKLGKLDTAWDILIRFAGKD----VVSWTTMIAGYTQYNFDDKALTTFRQMLD 567

Query: 228  KNVAS---------------------------------------WVSLIDGFMRKGDLKK 248
            + + S                                         +L+  + + G++++
Sbjct: 568  RGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEE 627

Query: 249  AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
            A   FEQ      ++W A+++GF Q+G  E+AL +F +M   G+ +N+FT  SA+ A ++
Sbjct: 628  AYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASE 687

Query: 309  VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
               ++ G +VH  I+   +  +  +  A++ MYAKCG+I  A   F E   K+ ++W AM
Sbjct: 688  TANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAM 747

Query: 369  IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
            I   + HG   +A+  F +M++S   P+    + +L+AC + G V   + +F+SM  +Y 
Sbjct: 748  INAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYG 807

Query: 429  IEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQNSQ-NSFTK 462
            + P  +H+  VV++L+R G  S+                          ++N +   F  
Sbjct: 808  LAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAA 867

Query: 463  --LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
              LL+L+P+  ++YVLLSN+YA   +W      R  M+ + +KK+PG S+IEV   +H F
Sbjct: 868  HHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 927

Query: 521  EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAF 577
              G   H LA EIH   +D+   A E GY+     +L  +++E K+  +  HSEKLA++F
Sbjct: 928  YVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAISF 987

Query: 578  GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            GL+       I ++K L +C DCH  +K+ SK+S REI++RD  RFH+F+ G CSC+DYW
Sbjct: 988  GLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 182/406 (44%), Gaps = 43/406 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            Q+H  ++     + + +   L+S      S+  A  IF + + ++   +N LI GL++ 
Sbjct: 291 EQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQC 350

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            + +  +  F  M    + P+  T   +  + +S   L  G+ LH    K G   +  + 
Sbjct: 351 GYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE 410

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L ++Y +      A   F ET    + E+V+LWNV++     +  LR +  +F  M  
Sbjct: 411 GALLNLYAKCSDIETALNYFLET----EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQI 466

Query: 228 KNVA-------------------------------------SWVS--LIDGFMRKGDLKK 248
           + +                                      ++V   LID + + G L  
Sbjct: 467 EEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDT 526

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++  +   K VVSWT MI G++Q    +KAL  F QMLD G+R+++  + +A+SACA 
Sbjct: 527 AWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAG 586

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + AL+ G ++H     + F        ALV +Y+KCGNIE A L F +T+  D + W A+
Sbjct: 587 LQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNAL 646

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
           + G    G  E+A++ F +M   G + +   F + + A   +  +K
Sbjct: 647 VSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMK 692



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/384 (27%), Positives = 165/384 (42%), Gaps = 61/384 (15%)

Query: 85  IFDHFTPKNLHIFNVL-----IR---------GLAENSHFQSCISHFVFMLRLSVRPNRL 130
           IF H  P+ L    VL     IR          ++E+  FQ   +    +    +RPN  
Sbjct: 11  IFIHGVPRKLKTRTVLRTLCQIRRASFTAISVSISEDESFQE--NGIDSVENCGIRPNHQ 68

Query: 131 TYPFVSKS-VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           T  ++ +  + +   L  GR LH  I+K G + +A +   L D Y+  G   GA KVFDE
Sbjct: 69  TLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDE 128

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----------------- 232
            PE+    ++  WN +I   +      K   LFG M  +NV                   
Sbjct: 129 MPER----TIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSV 184

Query: 233 -----------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                                     LID + R G + +A  +F+ +  K   SW AMI+
Sbjct: 185 AFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMIS 244

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G S+N    +A+ +F  M   G+    +   S LSAC K+ +LE G ++H  +    F  
Sbjct: 245 GLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSS 304

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +  ALV +Y   G++ +A  +F    ++D +T+  +I GL+  G  E+A++ FK+M 
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 390 YSGTEPDGTVFLAILTACWYSGQV 413
             G EPD     +++ AC   G +
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTL 388



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 104/433 (24%), Positives = 190/433 (43%), Gaps = 44/433 (10%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P++   +  +   + ++ S  + R++H+QI+      ++ ++ +L+        +D AL
Sbjct: 64  RPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGAL 123

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
            +FD    + +  +N +I+ LA  S        F  M+  +V PN  T+  V ++    S
Sbjct: 124 KVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGS 183

Query: 144 L-LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           +   +   +H  I+  G+     V   L D+Y + G    A +VFD    K+ S     W
Sbjct: 184 VAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSS----W 239

Query: 203 NVLINGCSKIGYLRKAVELF------GMMPKKNVASWV---------------------- 234
             +I+G SK     +A+ LF      G+MP     S V                      
Sbjct: 240 VAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLK 299

Query: 235 -----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
                      +L+  +   G L  A  +F  M ++  V++  +ING SQ G  EKA+ +
Sbjct: 300 LGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMEL 359

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F +M   G+  +  T+ S + AC+  G L +G ++H Y +   F     I  AL+++YAK
Sbjct: 360 FKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAK 419

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           C +IE A   F ET+ ++++ W  M+    +      + + F++M      P+   + +I
Sbjct: 420 CSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSI 479

Query: 404 LTACWYSGQVKLA 416
           L  C   G ++L 
Sbjct: 480 LKTCIRLGDLELG 492


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 166/437 (37%), Positives = 255/437 (58%), Gaps = 33/437 (7%)

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-G 291
           W +L D + + G +  A  +F++MP +  VSWTAM+  +   G   +   +F  ML   G
Sbjct: 205 WSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRG 264

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           VR N+FT    L ACA+      G +VH  ++ +  G      +AL+ MY+KCG++ +A 
Sbjct: 265 VRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAV 324

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF    + DL++WTA+I G A +G+ E+A++YF   + SG +PD   F+ +L+AC ++G
Sbjct: 325 RVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAG 384

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK--------- 462
            V   L  F S++  Y IE +  H+  V++LLSR GQ  +  +   N   K         
Sbjct: 385 LVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASL 444

Query: 463 -------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                              L +++P++P++YV L+NIYA+ G + +V  VR +M+ + I 
Sbjct: 445 LGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGIT 504

Query: 504 KDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K P  S+IEV   VH F  G   H  A EI++ L+ +     E+GY+   E+VLH++++E
Sbjct: 505 KMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDE 564

Query: 562 -KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT 620
            KE+ +G HSE+LA+AFG+I T  G+ IK+ K L ICGDCH+ +K  S+I QR+I++RD+
Sbjct: 565 QKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDS 624

Query: 621 -RFHYFKDGTCSCRDYW 636
            RFH+FKDG CSCRDYW
Sbjct: 625 NRFHHFKDGICSCRDYW 641



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/201 (30%), Positives = 106/201 (52%), Gaps = 8/201 (3%)

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGD-LKKAGELFEQMPEKGVVSWTAMINGFSQ 273
           L  A+ LF  +   ++ S  +LI    R    L  A ELF++MP++   +W+A+++G+++
Sbjct: 79  LPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTR 138

Query: 274 NGEAEKALAMFFQMLDAGVRA---NDFTVVSALSACAKVGALEAGVRVHNYI---SCNDF 327
           +G+ E ALA++ +M +        N+FT  SAL+A A      AG  +H ++     +  
Sbjct: 139 HGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAA 198

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
           G    + +AL DMYAKCG ++ A  VF     +D ++WTAM+      GR  +  + F  
Sbjct: 199 GGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLH 258

Query: 388 MMYS-GTEPDGTVFLAILTAC 407
           M+ + G  P+   +  +L AC
Sbjct: 259 MLRTRGVRPNEFTYAGVLRAC 279



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 42/332 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFTPKNLHIFNVLIRGL 104
           R++H  ++   + A+        + A ++     +D A  +FD    ++   +  ++   
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERY 243

Query: 105 AENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            +          F+ MLR   VRPN  TY  V ++ A  ++ S GR +H  + KSG    
Sbjct: 244 FDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDS 303

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
            F    L  MY + G    A +VF+   + +    ++ W  +I+G ++ G   +A+  F 
Sbjct: 304 CFAESALLRMYSKCGDMGSAVRVFEAMAKPD----LVSWTAVISGYAQNGQPEEALRYFD 359

Query: 224 MMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA-----MINGFSQN 274
           M  +  +     ++V ++      G + K  E+F  + E+  +  TA     +I+  S++
Sbjct: 360 MFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRS 419

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G+ E+A  M   M    V+ N F   S L  C          R+H  +     GL     
Sbjct: 420 GQFERAEKMIGNM---AVKPNKFLWASLLGGC----------RIHKNV-----GLARRAA 461

Query: 335 TALVDM-------YAKCGNIEAASLVFGETKE 359
            AL ++       Y    NI A+  +F E ++
Sbjct: 462 EALFEIEPENPATYVTLANIYASVGLFDEVED 493


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 208/677 (30%), Positives = 338/677 (49%), Gaps = 96/677 (14%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           + +Q + IH  +    L  +  ++T L S+ +    +  A  +FD    +++  +N ++ 
Sbjct: 240 TIRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLG 299

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
             A++ H       F  ML   + P+++T    S   +SL     GR +H   ++ G++ 
Sbjct: 300 AYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSSLRF---GRMIHGCALEKGLDR 356

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           D  +   L DMY + G    A  +F   P    S     WN +I G S+ G +++AVELF
Sbjct: 357 DIVLGNALLDMYTRCGSPEEARHLFKRIPCNAVS-----WNTMIAGSSQKGQMKRAVELF 411

Query: 223 ------GMMPKKNVASWVSLIDG------------------------------------- 239
                 GM P +  A++++L++                                      
Sbjct: 412 QRMQLEGMAPVR--ATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVV 469

Query: 240 --FMRKGDLKKAGELFEQ--MPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
             +   G + +A   F++  M ++  VVSW A+I+  SQ+G  ++AL  F +M   GV  
Sbjct: 470 KMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAP 529

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  T V+ L ACA   AL  G  VH+++  +       + TAL  MY +CG++E+A  +F
Sbjct: 530 NQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATALASMYGRCGSLESAREIF 589

Query: 355 GETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
            +   E+D++ + AMI   + +G   +A++ F +M   G+ PD   F+++L+AC + G  
Sbjct: 590 EKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACSHGGLA 649

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQ-------------------- 451
                 F SMR  Y I PS  H+   V++L R G   D++                    
Sbjct: 650 DEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVWKTLLG 709

Query: 452 ---GYQNSQ-----NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
               Y++       NS  +  +L P   S+YV+LSNI A  G+W + A VRT M+ R ++
Sbjct: 710 ACRKYRDVDRGRLANSMVR--ELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESRGLR 767

Query: 504 KDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K+ G S+IE+   VH F AG   H  ++EI+ +LE + A  RE GY+P T  VL  + E 
Sbjct: 768 KEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIGYVPDTRLVLRKVDEA 827

Query: 562 KEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT 620
           ++E L C HSE+LA+A G++ ++   T++++K L +C DCH+  K+ SKI  +EIV+RDT
Sbjct: 828 EKERLLCQHSERLAIALGVMSSST-DTVRVMKNLRVCEDCHNATKFISKIVNKEIVVRDT 886

Query: 621 -RFHYFKDGTCSCRDYW 636
            RFH+F DG+CSC DYW
Sbjct: 887 HRFHHFVDGSCSCGDYW 903



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 190/405 (46%), Gaps = 52/405 (12%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q R IHA I+   L   S +   L+        +  A+ +F+    ++L  +N  I   A
Sbjct: 146 QGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANA 204

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           ++      +  F  M    VRP R+T        A++      + +H ++ +SG+E    
Sbjct: 205 QSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQ---AQAIHFIVRESGLEQTLV 261

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
           V   LA  Y +LG    A +VFD   E++    V+ WN ++   ++ G++ +A  LF   
Sbjct: 262 VSTALASAYARLGHLYQAKEVFDRAAERD----VVSWNAMLGAYAQHGHMSEAALLFARM 317

Query: 223 ---GMMPKK----NVASWVS--------------------------LIDGFMRKGDLKKA 249
              G+ P K    N ++  S                          L+D + R G  ++A
Sbjct: 318 LHEGISPSKVTLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEA 377

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-- 307
             LF+++P    VSW  MI G SQ G+ ++A+ +F +M   G+     T ++ L A A  
Sbjct: 378 RHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASN 436

Query: 308 --KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE--AASLVFGETKEK-DL 362
             +  A+  G ++H+ I    +  + AIGTA+V MYA CG I+  AAS   G  +++ D+
Sbjct: 437 PEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDV 496

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++W A+I  L+ HG  ++A+ +F++M   G  P+    +A+L AC
Sbjct: 497 VSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCVAVLDAC 541



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 193/424 (45%), Gaps = 53/424 (12%)

Query: 25  PSNNITET---HIISLIHSSNSTK---QLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           PS++   T   H++ L+ ++   +   Q R+IHA+I+  +L     +   L+      +S
Sbjct: 20  PSSSSGATRPAHLVRLLRAAGDDRLLSQGRRIHARIV--SLGLEEELGNHLLRLYLKCES 77

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +     +F     ++   +  +I    E+   +  I  F  M +  VR + +T+  V K+
Sbjct: 78  LGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKA 137

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L  LS GR +H  IV+SG++  + +   L  +Y   G    A  +F E  E++    
Sbjct: 138 CARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLF-EKMERD---- 192

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMP-------------------------- 226
           ++ WN  I   ++ G L  A+ELF      G+ P                          
Sbjct: 193 LVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIVR 252

Query: 227 ----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
               ++ +    +L   + R G L +A E+F++  E+ VVSW AM+  ++Q+G   +A  
Sbjct: 253 ESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAAL 312

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +ML  G+  +  T+V+A + C+   +L  G  +H             +G AL+DMY 
Sbjct: 313 LFARMLHEGISPSKVTLVNASTGCS---SLRFGRMIHGCALEKGLDRDIVLGNALLDMYT 369

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           +CG+ E A  +F      + ++W  MI G +  G+ ++A++ F++M   G  P    +L 
Sbjct: 370 RCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLN 428

Query: 403 ILTA 406
           +L A
Sbjct: 429 LLEA 432



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 95/174 (54%), Gaps = 5/174 (2%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  +++   L    E+F ++  +   SWT +I  ++++G+A++A+ MF +M   GVR +
Sbjct: 68  LLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCD 127

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLV 353
             T ++ L ACA++G L  G  +H +I   + GLKG   +   L+ +Y  CG + +A L+
Sbjct: 128 AVTFLAVLKACARLGDLSQGRSIHAWIV--ESGLKGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           F E  E+DL++W A I   A  G    A++ F++M   G  P     +  LT C
Sbjct: 186 F-EKMERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVC 238



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 141/323 (43%), Gaps = 51/323 (15%)

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           + RP  L      ++     LLS GR +H  IV  G+E +  +  HL  +Y++       
Sbjct: 26  ATRPAHLVRLL--RAAGDDRLLSQGRRIHARIVSLGLEEE--LGNHLLRLYLKCESLGDV 81

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG 239
            +VF     ++++     W  +I   ++ G  ++A+ +F  M ++ V     ++++++  
Sbjct: 82  EEVFSRLEVRDEAS----WTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKA 137

Query: 240 FMRKGDLKK-----------------------------------AGELFEQMPEKGVVSW 264
             R GDL +                                   A  LFE+M E+ +VSW
Sbjct: 138 CARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSW 196

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A I   +Q+G+   AL +F +M   GVR    T+V AL+ CA +   +A   +H  +  
Sbjct: 197 NAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQA---IHFIVRE 253

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +       + TAL   YA+ G++  A  VF    E+D+++W AM+   A HG   +A   
Sbjct: 254 SGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALL 313

Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
           F +M++ G  P     +   T C
Sbjct: 314 FARMLHEGISPSKVTLVNASTGC 336



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           +V  L A      L  G R+H  I     GL+  +G  L+ +Y KC ++     VF   +
Sbjct: 32  LVRLLRAAGDDRLLSQGRRIHARIV--SLGLEEELGNHLLRLYLKCESLGDVEEVFSRLE 89

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D  +WT +I     HG+ ++AI  F +M   G   D   FLA+L AC   G +    +
Sbjct: 90  VRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRS 149

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLL 443
                   + +E  +K  +V+ NLL
Sbjct: 150 I-----HAWIVESGLKGKSVLANLL 169


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 201/628 (32%), Positives = 315/628 (50%), Gaps = 114/628 (18%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           L +RP+ +T   +  + AS+  L  G+ +H   V++G+  D FV   L  MY +  K   
Sbjct: 228 LKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNE 287

Query: 183 AFKVFDETPEKNKSE-------------------------------SVLLWNVLINGCSK 211
           A KVF+   +K+                                   V+ W+ +I G ++
Sbjct: 288 ANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQ 347

Query: 212 IGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDL--------------------- 246
            G+  +A+++F  M     + NV +  SL+ G    G L                     
Sbjct: 348 KGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWND 407

Query: 247 ---------------------KKAGELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAM 283
                                + A  +F+ +   +K VV+WT MI G++Q+GEA  AL +
Sbjct: 408 KEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKL 467

Query: 284 FFQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDM 340
           F Q+      ++ N FT+  AL ACA++G L  G ++H Y   N+   +   +G  L+DM
Sbjct: 468 FAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLIDM 527

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y+K G+I+AA  VF   K +++++WT+++ G  +HGR E+A+  F +M   G   DG  F
Sbjct: 528 YSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITF 587

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-- 458
           L +L AC +SG V   + +F  M   + I P  +H+  +V+LL R G+ ++  +  +N  
Sbjct: 588 LVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMS 647

Query: 459 --------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
                                     + +KL +L  ++  SY LLSN+YA   RWKDVAR
Sbjct: 648 MEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKDVAR 707

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG 550
           +R+LM+   I+K PG S+I+       F  G   H  +++I++ L D++   ++ GY+P 
Sbjct: 708 IRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQ 767

Query: 551 TEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASK 609
           T + LH++  EEK + L  HSEKLA+A+G++ T PG  I+I K L ICGDCHS + Y S 
Sbjct: 768 TSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISM 827

Query: 610 ISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           I   EIVLRD +RFH+FK G+CSCR YW
Sbjct: 828 IIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/475 (24%), Positives = 195/475 (41%), Gaps = 98/475 (20%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNL--FASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +ISL+    +    +  H QI +H      S  +   +   AS       A+S+     P
Sbjct: 33  LISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAE-----AVSLLQRLIP 87

Query: 92  KNLHIF--NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
            +  +F  N LIR   +       +  +  M RL   P+  T+PFV K+   +  L  G 
Sbjct: 88  SHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGA 147

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN------ 203
            +H ++  +G+  + F+   +  MY + G    A ++FDE  E+ K E ++ WN      
Sbjct: 148 SVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLER-KIEDIVSWNSILAAY 206

Query: 204 -----------------------------VLIN---GCSKIGYLRKAVELFGMMPKKNVA 231
                                         L+N    C+ +  L+   ++ G   +  + 
Sbjct: 207 VQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLV 266

Query: 232 SWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF--- 284
             V    +L+  + +   + +A ++FE + +K VVSW AM+ G+SQ G  + AL++F   
Sbjct: 267 DDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMM 326

Query: 285 -------------------------FQMLDA-------GVRANDFTVVSALSACAKVGAL 312
                                    F+ LD        G+  N  T+ S LS CA VGAL
Sbjct: 327 QEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGAL 386

Query: 313 EAGVRVHNYISCNDFGLKG-------AIGTALVDMYAKCGNIEAASLVFG--ETKEKDLL 363
             G + H Y+  N   L          +   L+DMYAKC +   A  +F   E K+K+++
Sbjct: 387 LYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVV 446

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPDGTVFLAILTACWYSGQVKLA 416
           TWT MI G A HG    A++ F ++    T  +P+       L AC   G+++L 
Sbjct: 447 TWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG 501



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 138/285 (48%), Gaps = 11/285 (3%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEK- 259
           ++  C +I  LR    +  ++    + S V    S++  + R G L  A ++F+++ E+ 
Sbjct: 133 VLKACGEIPSLRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERK 192

Query: 260 --GVVSWTAMINGFSQNGEAEKALAMFFQM---LDAGVRANDFTVVSALSACAKVGALEA 314
              +VSW +++  + Q G++  AL + F+M       +R +  T+V+ L ACA V AL+ 
Sbjct: 193 IEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQH 252

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G +VH +   N       +G ALV MYAKC  +  A+ VF   K+KD+++W AM+ G + 
Sbjct: 253 GKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQ 312

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
            G ++ A+  FK M     + D   + A++      G    AL+ F  M+  Y +EP+V 
Sbjct: 313 IGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQL-YGLEPNVV 371

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
               +++  + VG    G Q        +L L        +L+ N
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLN 416


>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
          Length = 602

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 309/580 (53%), Gaps = 47/580 (8%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLSLLSLGRGLHCLIVKS 158
           +R LA +S   S +    F+L+  +  N L  T  F + + A+ +LL     L   +++ 
Sbjct: 26  LRLLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLD---PLVAALLRP 82

Query: 159 GVEYDAF-----VRVHLADMYVQLGKTRGAFKVF----DETPEKNKSESVLLWNVLINGC 209
            V  DAF     +R H       L     AF          P K     +L     + G 
Sbjct: 83  SVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGS 142

Query: 210 SKIGYLRKAVEL-FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
             +G    A  L FG    + V++ +  +      G L  A  +F++MP++  V+W+AMI
Sbjct: 143 PDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMI 202

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G+ + G +  A+ +F +M   GV+A++ TV+  L+A   +GALE    V  ++     G
Sbjct: 203 GGYVRGGLSSDAVELFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIG 262

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +  AL+D  AKCG+++ A  VF   +++ +++WT++I  LA+ GR ++A++ F++M
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
             +G  PD   F+ +LTAC ++G V     +FD+M+ +Y IEP ++H+  +V++  R G 
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGM 382

Query: 449 ---------------------------DSQGYQNSQNSFTK-LLQLKPKHPSSYVLLSNI 480
                                       + G      S T+ LL   P H ++Y++LSN+
Sbjct: 383 VERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNV 442

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           +A   RWK+ + +R  M +R IKK PG S +E++G VH F AG   H   K+I+  +E++
Sbjct: 443 FALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEM 502

Query: 539 MAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
               R  G++  T  VL ++ EE KE AL  HSEKLA+AF L++T PGT +++VK L +C
Sbjct: 503 ARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVC 562

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+ +K  S++ +REIV+RD +RFH FKDG+CSC+D+W
Sbjct: 563 SDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 199/631 (31%), Positives = 318/631 (50%), Gaps = 76/631 (12%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+ YA  +FD    +++  +N +I     N   +  I  +  M+   + P+  T+  V K
Sbjct: 125 SVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFK 184

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           + + L L+  G+  H   V  GV   + FV   L DMY + GK R A  V D+   K+  
Sbjct: 185 AFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKD-- 242

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN--------------------------- 229
             V+L+  LI G S  G   +++++F  M KK                            
Sbjct: 243 --VVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLI 300

Query: 230 ------------VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                       VAS  SL+  + R G +  + ++F+Q      V+WT++I G  QNG  
Sbjct: 301 HGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGRE 360

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           E AL  F QML + +  N FT+ S L AC+ +  LE G ++H  +      +   +G AL
Sbjct: 361 EIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAAL 420

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           +D Y KCG+ E A  VF    E D+++  +MI+  A +G   +A+Q F  M  +G EP+ 
Sbjct: 421 IDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNN 480

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----- 452
             +L +L+AC  +G ++   + F S R    IE +  H+  +V+LL R G+  +      
Sbjct: 481 VTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLIN 540

Query: 453 ----------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                  + ++    +++ L P+   ++VLLSN+YA+ G W  V
Sbjct: 541 QVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKV 600

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYM 548
             +++ M+   +KK+P  S+++V   +H F AG   H   ++I  KLE+++   +E GY+
Sbjct: 601 IEMKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYV 660

Query: 549 PGTEWVLHNIKEEKE-EALGCHSEKLALAFGLIQTT-PGTTIKIVKKLTICGDCHSLMKY 606
           P T +VL ++ EEK+  +L  HSEKLA+AF L ++    TTI+I+K L +CGDCH+ MK+
Sbjct: 661 PDTRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKF 720

Query: 607 ASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            SKI  R+I+ RD  RFH+F++G CSC DYW
Sbjct: 721 VSKIVGRDIIARDVKRFHHFRNGLCSCGDYW 751



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/173 (30%), Positives = 99/173 (57%), Gaps = 1/173 (0%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LID +++ G +  A ++F+++P + +V+W +MI  + +NG +++A+ ++ +M+  G+  +
Sbjct: 116 LIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPD 175

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVF 354
           +FT  S   A + +G +  G R H        G+    +G+ALVDMYAK G +  A LV 
Sbjct: 176 EFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVS 235

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +   KD++ +TA+I G + HG   +++Q F+ M   G E +     ++L  C
Sbjct: 236 DQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCC 288



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 149/334 (44%), Gaps = 22/334 (6%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IH  I+   L ++    T L++       +D +L +F  F   N   +  +I GL +N
Sbjct: 298 RLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQN 357

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  MLR S+ PN  T   V ++ +SL++L  G+ +H +++K G++ D +V 
Sbjct: 358 GREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVG 417

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226
             L D Y + G T  A  VF+   E +    V+  N +I   ++ G+  +A++LF  M  
Sbjct: 418 AALIDFYGKCGSTEIARSVFNGLLEVD----VVSVNSMIYSYAQNGFGHEALQLFSGMKD 473

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT-----AMINGFSQNGEAE 278
              + N  +W+ ++      G L++   +F      G +  T      M++   + G  +
Sbjct: 474 TGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLK 533

Query: 279 KALAMFFQMLDAGVRANDFTV-VSALSACAKVGALEAGVRVHNYISCNDFGLK-GAIGTA 336
           +A     +ML   V  +D  +  + LSAC   G +E   RV N +   D   + G     
Sbjct: 534 EA-----EMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNRVI--DLAPEDGGTHVL 586

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           L ++YA  GN      +    +E  L    AM W
Sbjct: 587 LSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSW 620


>gi|115446651|ref|NP_001047105.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|46389885|dbj|BAD15486.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536636|dbj|BAF09019.1| Os02g0552100 [Oryza sativa Japonica Group]
 gi|125582482|gb|EAZ23413.1| hypothetical protein OsJ_07107 [Oryza sativa Japonica Group]
 gi|215712305|dbj|BAG94432.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 586

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 169/444 (38%), Positives = 258/444 (58%), Gaps = 37/444 (8%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V SW +++ G+ + GDL  A E+F +MPE+ +VSW+AM++   + GE  +AL +F +M+
Sbjct: 144 DVVSWNTMVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMM 203

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA---IGTALVDMYAKCG 345
               R +   +VS L ACA +GA+E G  VH Y+    FG +     + TALVDMY KCG
Sbjct: 204 REEFRPDVVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCG 263

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +E A  VF     +D++ W AMI GLA++G  E+A++ F++M+  G  P+ + F+A+L 
Sbjct: 264 CMEDAWQVFDGVHRRDVVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLC 323

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------------------ 447
           AC ++G+V      F SM+ DY I+P  +H+  + +LL R G                  
Sbjct: 324 ACTHTGRVDEGKRVFKSMQ-DYGIKPQREHYGCLADLLGRAGNVEEAEALLLDMPMEPHA 382

Query: 448 ----------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                     Q        +    +L++L+P     YV+L N+YA  GRW++   +R +M
Sbjct: 383 SQWGALMSSCQMHNDINVGERVGKRLIELEPYDGGRYVVLFNLYAVNGRWEEARTIRQMM 442

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           + R  KK+ G S+IE+NG VH F +G   H L ++I++ LEDI    +  GY+  T  V+
Sbjct: 443 EDRGAKKETGLSFIELNGLVHEFISGDTRHPLTRKIYALLEDIERRLQLIGYVKDTSQVI 502

Query: 556 HNIKEEKEE--ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
            ++ +E+++  AL  HSE+LALAFG++    G  I+IVK L +C DCH   K  SK+ +R
Sbjct: 503 MDMDDEEDKGIALSYHSERLALAFGILNIPQGVPIRIVKNLRVCRDCHVHSKLVSKLYER 562

Query: 614 EIVLRDT-RFHYFKDGTCSCRDYW 636
           EI++RD  RFH F+DG CSC DYW
Sbjct: 563 EIIVRDRHRFHVFRDGVCSCNDYW 586



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/297 (22%), Positives = 126/297 (42%), Gaps = 21/297 (7%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           ++S       +  A  +F     +NL  ++ ++        F   +  F  M+R   RP+
Sbjct: 151 MVSGYGKGGDLGAAREVFARMPERNLVSWSAMVDACVRAGEFGEALWVFDRMMREEFRPD 210

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVK---SGVEYDAFVRVHLADMYVQLGKTRGAFK 185
            +    V K+ A L  +  GR +H  +      G   +  +   L DMY + G    A++
Sbjct: 211 VVVLVSVLKACAHLGAVERGRWVHRYLETGSFGGRRGNLMLETALVDMYCKCGCMEDAWQ 270

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFM 241
           VFD    ++    V+LWN +I G +  GY  +A+ELF  M +K    N +++++++    
Sbjct: 271 VFDGVHRRD----VVLWNAMIGGLAMNGYGERALELFRRMLQKGFMPNESTFIAVLCACT 326

Query: 242 RKGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
             G + +   +F+ M + G+      +  + +   + G  E+A A+   +LD  +  +  
Sbjct: 327 HTGRVDEGKRVFKSMQDYGIKPQREHYGCLADLLGRAGNVEEAEAL---LLDMPMEPHAS 383

Query: 298 TVVSALSACAKVGALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
              + +S+C     +  G RV    I    +   G     L ++YA  G  E A  +
Sbjct: 384 QWGALMSSCQMHNDINVGERVGKRLIELEPY--DGGRYVVLFNLYAVNGRWEEARTI 438


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 181/585 (30%), Positives = 303/585 (51%), Gaps = 45/585 (7%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N ++ G + +   +  +     ML+  +RP+  T   + KSVA+  LL  G  +H
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  +++ +E D +    L DMY + G+   A KV D    +N    +  WN L+ G +  
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN----LTTWNSLVAGYANA 371

Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
           G    A+EL  +M K     ++ +W  LI G+   G   +A  L  Q+   GV    VSW
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 431

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G   NGE E +     +M   GV+ +  T+   L ACA +   + G  +H +   
Sbjct: 432 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +     + TAL+DMY+K G++ +A ++F   ++K+L+   AM+ GLA+HG+  +AI+ 
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  SG +PD   F A+LTAC   G V     +FDSM   Y ++P+ +++  +V+LL+
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLA 611

Query: 445 RVGQDSQGYQNSQNS----------------------------FTKLLQLKPKHPSSYVL 476
           R G   +     + S                               L  L+P + ++Y+L
Sbjct: 612 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLL 671

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           + N+Y  E  + +   ++  M+ R +   PGWS+I++   +H FE  G  H    EI+ +
Sbjct: 672 MMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEE 731

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPG-TTIKIVK 592
           L  ++   ++ GY+P T  + +N++ EEKE+ L  H+EKLA+ +GLI++      ++++K
Sbjct: 732 LIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMK 791

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
              +C DCH + K+ S +  R+I+LRD  RFH+F DG CSC DYW
Sbjct: 792 NTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 162/372 (43%), Gaps = 34/372 (9%)

Query: 49  QIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLA 105
           Q+H+  +   L    R+T  L+   A L +    A  + +      K+  ++N  +  LA
Sbjct: 73  QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLA 132

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           E   +   I+ F  M    V  +  T   V  +      L  GR +H   +K  ++    
Sbjct: 133 EAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPL 192

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   LA MY +      A +V D       + SV+ WN ++  C+++G +  A+EL   M
Sbjct: 193 VPGFLAGMYAENADVAAATRVLDAM----GAGSVVPWNAVVACCARLGLVDDALELAARM 248

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
            +                             PE  V +W  +++G S++G   +AL +  
Sbjct: 249 SRSG---------------------------PEPNVATWNTVLSGCSRHGRDREALGVVA 281

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
            ML  G+R +  TV S L + A  G L  G+ +H +   N        GTALVDMYAKCG
Sbjct: 282 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCG 341

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            ++ A  V    + ++L TW +++ G A  GR++ A++  + M  +  +PD T +  ++T
Sbjct: 342 RLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLIT 401

Query: 406 ACWYSGQVKLAL 417
               +GQ   A+
Sbjct: 402 GYSMNGQSSQAV 413



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 7/271 (2%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           +L+D   R G       L  +  E G    V W   +   ++  E ++A+A+F +M   G
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           V A+ +T    L AC + GAL  G  VH Y           +   L  MYA+  ++ AA+
Sbjct: 152 VPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAAT 211

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            V        ++ W A++   A  G  + A++   +M  SG EP+   +  +L+ C   G
Sbjct: 212 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 271

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471
           + + AL    SM     + P     + ++  ++  G    G +   + F    QL+P   
Sbjct: 272 RDREALGVVASM-LKQGLRPDATTVSSLLKSVANTGLLRHGME--IHCFFLRNQLEPDVY 328

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
           +   L+ ++YA  GR     +V   ++ R++
Sbjct: 329 TGTALV-DMYAKCGRLDCAQKVLDALEHRNL 358



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 25/268 (9%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K+ +++H   +         ++T LI   S   S+  A  IF+    KNL + N ++ GL
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
           A +   +  I  F  M    ++P+ +T+  +  +  S+ L++ G      +  K GV+  
Sbjct: 540 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPT 599

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAV 219
                 + D+  + G    A    + +P    +     W  L+ GCS  G L      A 
Sbjct: 600 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASH---WGALLTGCSIHGNLALAEVAAR 656

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---F 271
            LF + P  N A+++ +++ +  +    +A  L   M  +GV      SW  +  G   F
Sbjct: 657 NLFILEP-YNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVF 715

Query: 272 SQNGEA--------EKALAMFFQMLDAG 291
             +G+         E+ + + FQ+  AG
Sbjct: 716 EVDGKPHPETAEIYEELIRLVFQIKKAG 743


>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
 gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
 gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
 gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 602

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 309/580 (53%), Gaps = 47/580 (8%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLSLLSLGRGLHCLIVKS 158
           +R LA +S   S +    F+L+  +  N L  T  F + + A+ +LL     L   +++ 
Sbjct: 26  LRLLAASSTPTSLLQSVAFLLKSGLHANSLVLTRLFAASASAAPALLD---PLVTALLRP 82

Query: 159 GVEYDAF-----VRVHLADMYVQLGKTRGAFKVF----DETPEKNKSESVLLWNVLINGC 209
            V  DAF     +R H       L     AF          P K     +L     + G 
Sbjct: 83  SVPLDAFLANTLIRAHATSPIHSLRLRAAAFFPLMLRGAVVPNKFTFPFLLKACAALPGS 142

Query: 210 SKIGYLRKAVEL-FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
             +G    A  L FG    + V++ +  +      G L  A  +F++MP++  V+W+AMI
Sbjct: 143 PDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDARNVFDRMPKESAVTWSAMI 202

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G+ + G +  A+ +F +M   GV+A++ TV+  L+A   +GALE    V  ++     G
Sbjct: 203 GGYVRGGLSSDAVDLFREMQANGVQADEVTVIGVLAAATDLGALELARWVRRFVEREGIG 262

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +  AL+D  AKCG+++ A  VF   +++ +++WT++I  LA+ GR ++A++ F++M
Sbjct: 263 KSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRSVVSWTSVIDALAMEGRGKEAVRVFEEM 322

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
             +G  PD   F+ +LTAC ++G V     +FD+M+ +Y IEP ++H+  +V++  R G 
Sbjct: 323 KVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGM 382

Query: 449 ---------------------------DSQGYQNSQNSFTK-LLQLKPKHPSSYVLLSNI 480
                                       + G      S T+ LL   P H ++Y++LSN+
Sbjct: 383 VERAMEFVRTMPIQPNPVIWRSLVSACRAHGRLELGESITRSLLHEYPAHEANYIMLSNV 442

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           +A   RWK+ + +R  M +R IKK PG S +E++G VH F AG   H   K+I+  +E++
Sbjct: 443 FALTQRWKEKSEIRREMSKRGIKKVPGCSIVELDGEVHEFIAGDESHPQYKDIYRMVEEM 502

Query: 539 MAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
               R  G++  T  VL ++ EE KE AL  HSEKLA+AF L++T PGT +++VK L +C
Sbjct: 503 ARELRRVGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFALLRTPPGTQVRVVKNLRVC 562

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+ +K  S++ +REIV+RD +RFH FKDG+CSC+D+W
Sbjct: 563 SDCHAAIKCISQVYRREIVVRDRSRFHRFKDGSCSCKDFW 602


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 192/658 (29%), Positives = 325/658 (49%), Gaps = 81/658 (12%)

Query: 56  LHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           LH+    + ++   I+  SL         I+ A  IF+     N+ ++N+++    + S 
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
                  F  M    + PN+ TYP + ++      + LG  +H L +K+G E D +V   
Sbjct: 327 LAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------G 223
           L DMY +      A K+ +   +++    V+ W  +I G  +  +  +A+  F      G
Sbjct: 387 LIDMYSKYRCLDKARKILEMLEKRD----VVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 224 MMPKK---------------------------------NVASWVSLIDGFMRKGDLKKAG 250
           + P                                   +++ W +L++ + R G  ++A 
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF ++  K  ++W  +I+GF Q+   E+AL +F +M  AG + N FT +SA+SA A + 
Sbjct: 503 SLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLA 562

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            ++ G +VH          +  +  AL+ +Y KCG+IE A ++F E   ++ ++W  +I 
Sbjct: 563 DIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT 622

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
             + HGR  +A+  F +M   G +P+   F+ +L AC + G V+  L++F SM   Y + 
Sbjct: 623 SCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLN 682

Query: 431 PSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQNSFTK 462
           P   H+  VV++L R GQ  +                          ++N    + +   
Sbjct: 683 PIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKH 742

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           LL+L+P   +SYVLLSN YA  G+W +  +VR +M+ R I+K+PG S+IEV   VH F  
Sbjct: 743 LLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFV 802

Query: 523 GG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALG-CHSEKLALAFGL 579
           G   H L+ +I+  L ++     + GY      + H  ++E+++     HSEKLA+AFGL
Sbjct: 803 GDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGL 862

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +   P   ++++K L +C DCHS MK+ S++++REIVLRD  RFH+F  G+CSC DYW
Sbjct: 863 MTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 198/435 (45%), Gaps = 54/435 (12%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           TA+ PT  + SS           ++S         Q R IHAQ+      + + +   LI
Sbjct: 138 TAVIPTPYVLSS-----------VLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALI 186

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
           +      S   A  +F      +   FN LI G A+  H +  +  F  M    +RP+ +
Sbjct: 187 ALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCV 246

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T   +  + AS+  L  G+ LH  ++K+G+ +D      L D+YV+ G    A  +F+  
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------ 232
              N    V+LWN+++    +I  L K+ E+FG M    +                    
Sbjct: 307 DRTN----VVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 233 -------------------WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                              +VS  LID + +   L KA ++ E + ++ VVSWT+MI G+
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
            Q+   E+ALA F +M D GV  ++  + SA SACA + A+  G+++H  +  + +    
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
           +I   LV++YA+CG  E A  +F E   KD +TW  +I G      YEQA+  F KM  +
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQA 542

Query: 392 GTEPDGTVFLAILTA 406
           G + +   F++ ++A
Sbjct: 543 GAKYNVFTFISAISA 557



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/444 (22%), Positives = 181/444 (40%), Gaps = 44/444 (9%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           +IHA  ++  L A   I   LI   + +  +  A  +F   + ++   +  ++ G A+  
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS----LLSLGRGLHCLIVKSGVEYDA 164
             +     +  M   +V P     P+V  SV S      L + GR +H  + K     + 
Sbjct: 124 LGKEAFRLYSQMHWTAVIPT----PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSET 179

Query: 165 FVRVHLADMYV-------------------------------QLGKTRGAFKVFDETPEK 193
           FV   L  +Y+                               Q G    A ++FDE    
Sbjct: 180 FVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLS 239

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKA 249
                 +    L+  C+ +G L+K  +L   + K  ++    +  SL+D +++ GD++ A
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETA 299

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            ++F       VV W  M+  + Q  +  K+  +F QM   G+  N FT    L  C   
Sbjct: 300 HDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCT 359

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G +E G ++H+    N F     +   L+DMY+K   ++ A  +    +++D+++WT+MI
Sbjct: 360 GQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMI 419

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G   H   E+A+  FK+M   G  PD     +  +AC     ++  L     +    + 
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY- 478

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGY 453
              +     +VNL +R G+  + +
Sbjct: 479 AADISIWNTLVNLYARCGRSEEAF 502



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 16/298 (5%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +NI      S      + +Q  QIHA++ +    A   I   L++  +     + A S+F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                K+   +N LI G  ++  ++  +  F+ M +   + N  T+     ++A+L+ + 
Sbjct: 506 REIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIK 565

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H   VK+G   +  V   L  +Y + G    A  +F E   +N+    + WN +I
Sbjct: 566 QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE----VSWNTII 621

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
             CS+ G   +A++LF  M     K N  +++ ++      G +++    F+ M     +
Sbjct: 622 TSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGL 681

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +     +  +++   + G+ ++A     +M    + AN     + LSAC     +E G
Sbjct: 682 NPIPDHYACVVDILGRAGQLDRARRFVDEM---PITANAMIWRTLLSACKVHKNIEIG 736



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 299 VVSALSACAKVGALEAGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           +  AL AC   G     V  +H        G    IG  L+D+YAK G +  A  VF E 
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             +D ++W AM+ G A  G  ++A + + +M ++   P   V  ++L+AC
Sbjct: 105 SSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSAC 154


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 181/585 (30%), Positives = 303/585 (51%), Gaps = 45/585 (7%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N ++ G + +   +  +     ML+  +RP+  T   + KSVA+  LL  G  +H
Sbjct: 256 NVATWNTVLSGCSRHGRDREALGVVASMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIH 315

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  +++ +E D +    L DMY + G+   A KV D    +N    +  WN L+ G +  
Sbjct: 316 CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN----LTTWNSLVAGYANA 371

Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
           G    A+EL  +M K     ++ +W  LI G+   G   +A  L  Q+   GV    VSW
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQIKAAGVTPNVVSW 431

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G   NGE E +     +M   GV+ +  T+   L ACA +   + G  +H +   
Sbjct: 432 TSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKELHCFALR 491

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +     + TAL+DMY+K G++ +A ++F   ++K+L+   AM+ GLA+HG+  +AI+ 
Sbjct: 492 RAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGLAVHGQGREAIEL 551

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  SG +PD   F A+LTAC   G V     +FDSM   Y ++P+ +++  +V+LL+
Sbjct: 552 FHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPTTENYACMVDLLA 611

Query: 445 RVGQDSQGYQNSQNS----------------------------FTKLLQLKPKHPSSYVL 476
           R G   +     + S                               L  L+P + ++Y+L
Sbjct: 612 RCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARNLFILEPYNSANYLL 671

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           + N+Y  E  + +   ++  M+ R +   PGWS+I++   +H FE  G  H    EI+ +
Sbjct: 672 MMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEVDGKPHPETAEIYEE 731

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPG-TTIKIVK 592
           L  ++   ++ GY+P T  + +N++ EEKE+ L  H+EKLA+ +GLI++      ++++K
Sbjct: 732 LIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGLIRSDASRAPVRVMK 791

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
              +C DCH + K+ S +  R+I+LRD  RFH+F DG CSC DYW
Sbjct: 792 NTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 162/372 (43%), Gaps = 34/372 (9%)

Query: 49  QIHAQIILHNLFASSRITTQLISS-ASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLA 105
           Q+H+  +   L    R+T  L+   A L +    A  + +      K+  ++N  +  LA
Sbjct: 73  QLHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLA 132

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           E   +   I+ F  M    V  +  T   V  +      L  GR +H   +K  ++    
Sbjct: 133 EAEEWDEAIAVFREMQARGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPL 192

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   LA MY +      A +V D       + SV+ WN ++  C+++G +  A+EL   M
Sbjct: 193 VPGFLAGMYAENADVAAATRVLDAM----GAGSVVPWNAVVACCARLGLVDDALELAARM 248

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
            +                             PE  V +W  +++G S++G   +AL +  
Sbjct: 249 SRSG---------------------------PEPNVATWNTVLSGCSRHGRDREALGVVA 281

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
            ML  G+R +  TV S L + A  G L  G+ +H +   N        GTALVDMYAKCG
Sbjct: 282 SMLKQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCG 341

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            ++ A  V    + ++L TW +++ G A  GR++ A++  + M  +  +PD T +  ++T
Sbjct: 342 RLDCAQKVLDALEHRNLTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLIT 401

Query: 406 ACWYSGQVKLAL 417
               +GQ   A+
Sbjct: 402 GYSMNGQSSQAV 413



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 117/271 (43%), Gaps = 7/271 (2%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           +L+D   R G       L  +  E G    V W   +   ++  E ++A+A+F +M   G
Sbjct: 92  ALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQARG 151

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           V A+ +T    L AC + GAL  G  VH Y           +   L  MYA+  ++ AA+
Sbjct: 152 VPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAAT 211

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            V        ++ W A++   A  G  + A++   +M  SG EP+   +  +L+ C   G
Sbjct: 212 RVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHG 271

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471
           + + AL    SM     + P     + ++  ++  G    G +   + F    QL+P   
Sbjct: 272 RDREALGVVASM-LKQGLRPDATTVSSLLKSVANTGLLRHGME--IHCFFLRNQLEPDVY 328

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
           +   L+ ++YA  GR     +V   ++ R++
Sbjct: 329 TGTALV-DMYAKCGRLDCAQKVLDALEHRNL 358



 Score = 46.2 bits (108), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 60/268 (22%), Positives = 111/268 (41%), Gaps = 25/268 (9%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K+ +++H   +         ++T LI   S   S+  A  IF+    KNL + N ++ GL
Sbjct: 480 KKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLTGL 539

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
           A +   +  I  F  M    ++P+ +T+  +  +  S+ L++ G      +  K GV+  
Sbjct: 540 AVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGVKPT 599

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR----KAV 219
                 + D+  + G    A    + +P    +     W  L+ GCS  G L      A 
Sbjct: 600 TENYACMVDLLARCGYLDEAMDFIERSPIDPGASH---WGALLTGCSIHGNLALAEVAAR 656

Query: 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV-----SWTAMING---F 271
            LF + P  N A+++ +++ +  +    +A  L   M  +GV      SW  +  G   F
Sbjct: 657 NLFILEP-YNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVF 715

Query: 272 SQNGEA--------EKALAMFFQMLDAG 291
             +G+         E+ + + FQ+  AG
Sbjct: 716 EVDGKPHPETAEIYEELIRLVFQIKKAG 743


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 189/584 (32%), Positives = 299/584 (51%), Gaps = 78/584 (13%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +  +R  Y  + K      LL  GR +H  I++S   +D  +   L +MY + G    A 
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 185 KVFDETPEKNKSESVLLWNVLING-------CSKIGYLRKAVELFGMMPKK--------- 228
           KVF++ P+++     + W  LI+G       C  + +  + +  FG  P +         
Sbjct: 116 KVFEKMPQRD----FVTWTTLISGYSQHDRPCDALLFFNQMLR-FGYSPNEFTLSSVIKA 170

Query: 229 ------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                   NV    +L+D + R G +  A  +F+ +  +  VSW
Sbjct: 171 AAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSW 230

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A+I G ++    EKAL +F  ML  G R + F+  S   AC+  G LE G  VH Y+  
Sbjct: 231 NALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIK 290

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +   L    G  L+DMYAK G+I  A  +F    ++D+++W +++   A HG  ++A+ +
Sbjct: 291 SGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWW 350

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F++M   G  P+   FL++LTAC +SG +    ++++ M+ D  + P   H+  VV+LL 
Sbjct: 351 FEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIV-PEAWHYVTVVDLLG 409

Query: 445 RVGQDSQG-------------------------YQNSQ---NSFTKLLQLKPKHPSSYVL 476
           R G  ++                          ++N++    +   + +L P  P  +V+
Sbjct: 410 RAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVI 469

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           L NIYA+ GRW D ARVR  M+   +KK+P  S++E+   +H F A    H   +EI  K
Sbjct: 470 LYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARK 529

Query: 535 LEDIMAGAREQGYMPGTEWVL-HNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
            E+++A  +E GY+P T  V+ H  ++E+E  L  HSEK+ALAF L+ T PG+TI I K 
Sbjct: 530 WEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKN 589

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + +CGDCH+ +K ASK+  REI++RDT RFH+FKDG CSC+DYW
Sbjct: 590 IRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 142/330 (43%), Gaps = 16/330 (4%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H   +     ++  + + L+   + +  +D A  +FD    +N   +N LI G A  S
Sbjct: 182 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRS 241

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +  F  MLR   RP+  +Y  +  + +S   L  G+ +H  ++KSG +  AF   
Sbjct: 242 GTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 301

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
            L DMY + G    A K+FD   +++    V+ WN L+   ++ G+ ++AV  F  M   
Sbjct: 302 TLLDMYAKSGSIHDARKIFDRLAKRD----VVSWNSLLTAYAQHGFGKEAVWWFEEMRRV 357

Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKA 280
             + N  S++S++      G L +    +E M + G+V     +  +++   + G+  +A
Sbjct: 358 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRA 417

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           L    +M    +        + L+AC      E G     ++   D    G     L ++
Sbjct: 418 LRFIEEM---PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP-HVILYNI 473

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           YA  G    A+ V  + KE  +    A  W
Sbjct: 474 YASGGRWNDAARVRKKMKESGVKKEPACSW 503


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 163/434 (37%), Positives = 254/434 (58%), Gaps = 32/434 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           SL+  +   G  + A ++FE M  +  V+W ++INGF+ NG   +AL ++ +M   GV  
Sbjct: 176 SLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEP 235

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + FT+VS LSAC ++GAL  G RVH Y+             AL+D+Y+KCGN   A  VF
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            E +E+ +++WT++I GLA++G   +A++ F ++   G +P    F+ +L AC + G + 
Sbjct: 296 DEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLD 355

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN---------------- 458
              N+F  M+ +Y I P ++HH  +V+LL R G+    Y   +N                
Sbjct: 356 EGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGA 415

Query: 459 ------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                       +  ++ +L+ +H   +VLLSN+YA+E RW DV  VR +M  + +KK P
Sbjct: 416 CTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTP 475

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KE 563
           G+S +E+   V+ F  G   H  ++E ++ L  I    + +GY+P T  VL +I+EE KE
Sbjct: 476 GYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKE 535

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
            AL  H+EK+A+AF L+ T PGT I+I+K L +C DCH  +K  SK+ +REI++RD +RF
Sbjct: 536 TALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRF 595

Query: 623 HYFKDGTCSCRDYW 636
           H+FKDG+CSC+DYW
Sbjct: 596 HHFKDGSCSCKDYW 609



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 195/417 (46%), Gaps = 58/417 (13%)

Query: 16  TTNIKSSHKPSNNITETHI-------ISLIHSSNSTK-QLRQIHAQIILHNLFASSRITT 67
           T+   +S+  S N  + H+       ISL+    S++ +L+QIHA  I H +   +    
Sbjct: 12  TSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFN 71

Query: 68  Q--LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLS 124
           +  + +  SL   + +A  IF+     N+  +N +IRG AE+ +    +  F  M    S
Sbjct: 72  KHLIFALVSLSAPMSFAAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASS 131

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + P+  T+PF+ K+VA L  +SLG G+H ++V++G +   FV+  L  MY   G    A+
Sbjct: 132 ILPDTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAY 191

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK----------- 227
           +VF+    +++    + WN +ING +  G   +A+ L+      G+ P            
Sbjct: 192 QVFEIMSYRDR----VAWNSVINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSAC 247

Query: 228 ----------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                 +N  +  +L+D + + G+ + A ++F++M E+ VVSWT
Sbjct: 248 VELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWT 307

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           ++I G + NG   +AL +F ++   G++ ++ T V  L AC+  G L+ G      +   
Sbjct: 308 SLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMK-E 366

Query: 326 DFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           ++G+   I     +VD+  + G + +A   +       + + W  ++    IHG  E
Sbjct: 367 EYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLE 423



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 85/169 (50%), Gaps = 1/169 (0%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACA 307
           A ++F Q+    + +W  MI GF+++     A+ +F QM  A  +  +  T      A A
Sbjct: 88  AAQIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVA 147

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
           K+  +  G  +H+ +  N F     +  +LV MY+  G  E+A  VF     +D + W +
Sbjct: 148 KLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNS 207

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           +I G A++G   +A+  +++M   G EPDG   +++L+AC   G + L 
Sbjct: 208 VINGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALG 256


>gi|359496160|ref|XP_003635166.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33760-like [Vitis vinifera]
          Length = 561

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 177/488 (36%), Positives = 277/488 (56%), Gaps = 72/488 (14%)

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLR--KAVELFGMMPKKNVASWV--SLIDGFM 241
           V D  P+ N +     +  +I  C+ I  LR  + +    ++   +  S+V  +LI  + 
Sbjct: 109 VADSIPQSNYT-----FTAVIKACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYA 163

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           + GD+ +A ++F++MPE+ +++W +MI+G+ QNG +++A+ +F++M + GV  +  T VS
Sbjct: 164 KSGDVGEAKKVFDRMPERTIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVS 223

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LSAC++ GAL+ G  VH+YI  N F +   +GT+L++MY +CGN+  A  VF E  E++
Sbjct: 224 VLSACSQSGALDLGCWVHDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERN 283

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           ++ WTAMI G  +HG   +AI+ F+ M   G                             
Sbjct: 284 VVAWTAMISGYGMHGYGREAIELFRLMRIHG----------------------------- 314

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------- 458
            MR DY + P V+HH  +V++L R G  ++ +Q  ++                       
Sbjct: 315 -MRQDYGLVPRVEHHVCMVDMLGRAGFLNEAFQYIKDLKQGEQAPALWTAMLGACKMHKN 373

Query: 459 ------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     LL  +P++PS YVLLSN+YA  GR + V  VR +M R+ +KK  G+S IE
Sbjct: 374 LDLGVQVAEHLLAAEPENPSHYVLLSNVYALAGRMERVEMVRNMMIRKGLKKQVGYSIIE 433

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCH 569
           V    + F  G   H    EI+  L+++M  ++E GY+P  E V+H ++EE+ E AL  H
Sbjct: 434 VGQKSYLFSMGDRSHPETTEIYKYLDELMLRSKEAGYVPAPELVMHELEEEEREYALRYH 493

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEKLA+AFGL++T+ G TI+IVK L +C DCHS +K+ S I+ REI++RD  RFH+FK+G
Sbjct: 494 SEKLAIAFGLMKTSHGMTIRIVKNLRMCEDCHSAIKFISNIANREIIVRDKLRFHHFKNG 553

Query: 629 TCSCRDYW 636
            CSC+DYW
Sbjct: 554 LCSCQDYW 561



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/433 (24%), Positives = 192/433 (44%), Gaps = 83/433 (19%)

Query: 17  TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
           T +  SH P+  +       L+H+    K L+Q+HA +I+   + S  + T+L++ A   
Sbjct: 12  TTLSPSHSPAYQV-------LLHAGPRLKPLQQVHAHLIVSGSYRSRALLTKLLTLACTA 64

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
            SI Y   +F   T  +  +FN +I+  ++       I  +  M+  S+  +  T+  V 
Sbjct: 65  GSILYTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVI 124

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           K+ A +S L +GR +H  ++  G + D+FV+  L   Y + G    A KVFD  PE+   
Sbjct: 125 KACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPER--- 181

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----------------------ASWV 234
            +++ WN +I+G  + G+ ++AV LF  M +  V                        WV
Sbjct: 182 -TIIAWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWV 240

Query: 235 -----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                            SLI+ + R G++ KA E+F++M E+ VV+WTAMI+G+  +G  
Sbjct: 241 HDYIVNNSFDVNVVLGTSLINMYTRCGNVSKAREVFDEMNERNVVAWTAMISGYGMHGYG 300

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +A+ +F  M   G+R  D+ +V                RV +++              +
Sbjct: 301 REAIELFRLMRIHGMR-QDYGLVP---------------RVEHHV-------------CM 331

Query: 338 VDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           VDM  + G +  A     + K  E+    WTAM+    +H   +  +Q  + ++    EP
Sbjct: 332 VDMLGRAGFLNEAFQYIKDLKQGEQAPALWTAMLGACKMHKNLDLGVQVAEHLL--AAEP 389

Query: 396 DGTVFLAILTACW 408
           +      +L+  +
Sbjct: 390 ENPSHYVLLSNVY 402



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 127/264 (48%), Gaps = 8/264 (3%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +    +LF  +       + A+I   S+ G +  A+  + +M+   +  +++T  + +
Sbjct: 65  GSILYTRQLFFSITNPDSFLFNAIIKASSKFGFSCDAILFYRRMVADSIPQSNYTFTAVI 124

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA + AL  G  +H+++    +     +  AL+  YAK G++  A  VF    E+ ++
Sbjct: 125 KACADISALRIGRPIHSHVLVCGYDSDSFVQAALIAFYAKSGDVGEAKKVFDRMPERTII 184

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            W +MI G   +G  ++A+  F +M   G E D   F+++L+AC  SG + L     D +
Sbjct: 185 AWNSMISGYDQNGFSKEAVGLFYRMRELGVEFDSATFVSVLSACSQSGALDLGCWVHDYI 244

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
             + F + +V   T ++N+ +R G  S+    ++  F    ++  ++  ++  + + Y  
Sbjct: 245 VNNSF-DVNVVLGTSLINMYTRCGNVSK----AREVFD---EMNERNVVAWTAMISGYGM 296

Query: 484 EGRWKDVARVRTLMQRRSIKKDPG 507
            G  ++   +  LM+   +++D G
Sbjct: 297 HGYGREAIELFRLMRIHGMRQDYG 320


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 190/646 (29%), Positives = 323/646 (50%), Gaps = 81/646 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T LI+  +  +S + A  +F      NL  ++ +I   A++ H    + +F  M +  
Sbjct: 298 VGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEG 357

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + PNR+T+  +     + S L     +H LI + G++    +R  L ++Y +      A 
Sbjct: 358 ILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDAR 417

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------ 232
            VFD+    N    ++ WN +I    +      A++LF  M ++ +              
Sbjct: 418 TVFDQLELPN----LISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGAC 473

Query: 233 ---------------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                        SL++ + + G+L  A  + ++M E+ + +W 
Sbjct: 474 TIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWN 533

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-NYISC 324
            +ING++ +G + +AL  + ++    +  +  T +S L+AC    +L  G  +H N + C
Sbjct: 534 VLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC 593

Query: 325 NDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
              GL     +  AL +MY+KCG++E A  +F     +  ++W  M+   A HG  E+ +
Sbjct: 594 ---GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVL 650

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
           +  +KM   G + +G  F+++L++C ++G +     +F S+  D  IE   +H+  +V+L
Sbjct: 651 KLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDL 710

Query: 443 LSRVG--QDSQGY--------------------------QNSQNSFTKLLQLKPKHPSSY 474
           L R G  Q+++ Y                             + +  KLL+L P + S+ 
Sbjct: 711 LGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSAS 770

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIH 532
           V+LSNIY+  G WK+ A++R  M  R +KK PG S I+V   VH F      H  A EI+
Sbjct: 771 VVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIY 830

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL-GCHSEKLALAFGLIQTTPGTTIKIV 591
            K+E++    RE GY+P T+ VLH++ EE++E+L   HSEKLA+AFGLI T   +++ I 
Sbjct: 831 DKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIF 890

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K L +C DCH+  K+ SKI+ REIV+RD  RFH+F+DG+CSC+DYW
Sbjct: 891 KNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/468 (26%), Positives = 213/468 (45%), Gaps = 52/468 (11%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+  A++ F     +N+  +NV+I   +    FQ  ++ F  ML   V PN +T   V  
Sbjct: 7   SLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITLVAVLN 66

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           S  S   L  G  +H L ++ G   +  V   L +MY + G    A  VF+E  EKN   
Sbjct: 67  SCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKN--- 123

Query: 198 SVLLWNVLINGCSKIGYLRK-AVELFGMM----PKKNVASWV------------------ 234
            V+ WN ++   S  G   K AVELF  M     K NV +++                  
Sbjct: 124 -VVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKFI 182

Query: 235 -----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                            +L++ + + G L  A ++F+ MP + V +W +MI+ +S +  +
Sbjct: 183 HSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERS 242

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
            +A  +F +M   G R +  T +S L AC     L+ G  V   IS   F L   +GTAL
Sbjct: 243 GEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTAL 302

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           + MYA+C + E A+ VFG  K+ +L+TW+A+I   A HG   +A++YF+ M   G  P+ 
Sbjct: 303 ITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNR 362

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457
             F+++L        ++  L+    +  ++ ++ +      +VN+  R        ++  
Sbjct: 363 VTFISLLNGFTTPSGLE-ELSRIHLLITEHGLDDTTTMRNALVNVYGRC-------ESPD 414

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           ++ T   QL+  +  S+  +  IY    R  D  ++   MQ++ I+ D
Sbjct: 415 DARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPD 462



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 184/417 (44%), Gaps = 47/417 (11%)

Query: 34  IISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           ++++++S  S ++LR    +HA  +    F ++ + T L++      ++  A S+F+   
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 91  PKNLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
            KN+  +N ++   + +   ++  +  F  ML   V+ N +T+  V  SV     L  G+
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING- 208
            +H  + +S    D FV   L + Y + G    A KVFD  P      SV  WN +I+  
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMP----CRSVGTWNSMISAY 236

Query: 209 ----------------------CSKIGYLR---KAVELFGMMPKKNVASWVS-------- 235
                                 C ++ +L      V    +   K+V   +S        
Sbjct: 237 SISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDL 296

Query: 236 -----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                LI  + R    + A ++F +M +  +++W+A+I  F+ +G   +AL  F  M   
Sbjct: 297 FVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQE 356

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G+  N  T +S L+       LE   R+H  I+ +       +  ALV++Y +C + + A
Sbjct: 357 GILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDA 416

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             VF + +  +L++W +MI       R++ A+Q F+ M   G +PD   F+ IL AC
Sbjct: 417 RTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGAC 473



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 106/527 (20%), Positives = 224/527 (42%), Gaps = 52/527 (9%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N IT  ++++ +   ++ ++ + IH+ +          + T L+++ +   S+  A  +
Sbjct: 158 ANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKV 217

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    +++  +N +I   + +         F  M +   R +R+T+  +  +  +   L
Sbjct: 218 FDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETL 277

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +   I ++  E D FV   L  MY +      A +VF    + N    ++ W+ +
Sbjct: 278 QHGKHVRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTN----LITWSAI 333

Query: 206 INGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKK------------- 248
           I   +  G+  +A+  F MM ++    N  +++SL++GF     L++             
Sbjct: 334 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 393

Query: 249 ----------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                                 A  +F+Q+    ++SW +MI  + Q    + AL +F  
Sbjct: 394 DDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRT 453

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M   G++ +    ++ L AC           VH  +  +  G    + T+LV+MYAK G 
Sbjct: 454 MQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGE 513

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           ++ A ++  E  E+ +  W  +I G A+HGR  +A++ ++K+       D   F+++L A
Sbjct: 514 LDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNA 573

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466
           C  S  +         M     +E  +    +V N L+ +       +N++  F     +
Sbjct: 574 CTSSTSLAEG-----KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDS---M 625

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
             +   S+  +   YA  G  ++V ++   M++  +K + G +++ V
Sbjct: 626 PIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLN-GITFVSV 671



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 92/388 (23%), Positives = 173/388 (44%), Gaps = 53/388 (13%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T   +++   + +  ++L +IH  I  H L  ++ +   L++     +S D A ++F
Sbjct: 361 NRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVF 420

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D     NL  +N +I    +       +  F  M +  ++P+R+ +  +   + + ++ S
Sbjct: 421 DQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTI---LGACTIGS 477

Query: 147 LGRG---LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            GR    +H  + +SG+     V+  L +MY + G+   A  +  E  E+     +  WN
Sbjct: 478 HGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQ----ITAWN 533

Query: 204 VLINGCSKIGYLRKAVELFGMM-----PKKNV---------ASWVSLIDGFM-------- 241
           VLING +  G  R+A+E +  +     P   V          S  SL +G M        
Sbjct: 534 VLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC 593

Query: 242 -----------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                            + G ++ A  +F+ MP +  VSW  M+  ++Q+GE+E+ L + 
Sbjct: 594 GLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLI 653

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYA 342
            +M   GV+ N  T VS LS+C+  G +  G +  + +  +D G+  K      LVD+  
Sbjct: 654 RKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLG-HDRGIEVKTEHYGCLVDLLG 712

Query: 343 KCGNI-EAASLVFGETKEKDLLTWTAMI 369
           + G + EA   +     E  ++TW +++
Sbjct: 713 RAGKLQEAEKYISKMPLEPGIVTWASLL 740



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 56/168 (33%), Positives = 90/168 (53%), Gaps = 1/168 (0%)

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
           + R G L  A   F ++  + VVSW  MI+ +S     ++ALA+F  ML  GV  N  T+
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           V+ L++C     L  G+ VH       F     + TAL++MY KCG +  A  VF E  E
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 360 KDLLTWTAMIWGLAIHG-RYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           K+++TW AM+   ++ G  ++ A++ F +M+  G + +   FL +L +
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNS 169



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 18/68 (26%), Positives = 40/68 (58%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY++CG++  A   FG+ + +++++W  MI   + +  +++A+  F  M+  G  P+   
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 400 FLAILTAC 407
            +A+L +C
Sbjct: 61  LVAVLNSC 68



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 104/242 (42%), Gaps = 9/242 (3%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P + +T   +++   SS S  + + IH+  +   L +   +   L +  S   S++ A  
Sbjct: 561 PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARR 620

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           IFD    ++   +N +++  A++   +  +     M +  V+ N +T+  V  S +   L
Sbjct: 621 IFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGL 680

Query: 145 LSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           ++ G +  H L    G+E        L D+  + GK + A K   + P +     ++ W 
Sbjct: 681 IAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLE---PGIVTWA 737

Query: 204 VLINGCSKIGYLRK----AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            L+  C     L +    A +L  + P  + AS V L + +  +GD K A +L   M  +
Sbjct: 738 SLLGACRVQKDLDRGKLAAGKLLELDPGNSSAS-VVLSNIYSERGDWKNAAKLRRAMASR 796

Query: 260 GV 261
            V
Sbjct: 797 RV 798


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 201/646 (31%), Positives = 324/646 (50%), Gaps = 96/646 (14%)

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
             S + A  +FD  +  N+  + ++I    +    +  I  F+ M+      ++ T   V
Sbjct: 216 ENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSV 275

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL---GKTRGAFKVFDETPE 192
             + A L  LSLG+ LH   ++SG+  D  V   L DMY +    G      KVFD    
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFD---- 329

Query: 193 KNKSESVLLWNVLING-------------------------------------CSKIGYL 215
           + +  SV+ W  LI G                                     C  +   
Sbjct: 330 RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDP 389

Query: 216 RKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
           R   ++ G   K+ +AS      S+I  F++   ++ A   FE + EK +VS+   ++G 
Sbjct: 390 RVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGT 449

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-----SCND 326
            +N   E+A  +  ++ +  +  + FT  S LS  A VG++  G ++H+ +     SCN 
Sbjct: 450 CRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQ 509

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                 +  AL+ MY+KCG+I+ AS VF   + +++++WT+MI G A HG   + ++ F 
Sbjct: 510 -----PVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFN 564

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           +M+  G +P+   ++AIL+AC + G V      F+SM  D+ I+P ++H+  +V+LL R 
Sbjct: 565 QMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRA 624

Query: 447 GQDSQGYQ-----------------------NSQNSFTKL-----LQLKPKHPSSYVLLS 478
           G  +  ++                       +S     KL     L+L P  P++Y+ LS
Sbjct: 625 GLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLS 684

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NIYA  G+W++   +R  M+ R++ K+ G S+IEV   +H+F  G   H  A +I+ +L+
Sbjct: 685 NIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELD 744

Query: 537 DIMAGAREQGYMPGTEWVLHNIKEEKEEA-----LGCHSEKLALAFGLIQTTPGTTIKIV 591
            ++   +  GY+P T+ VLH ++EE +EA     L  HSEK+A+AFGLI T+    +++ 
Sbjct: 745 RLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVF 804

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L +CGDCH+ MKY S +S REIVLRD  RFH+FKDG CSC DYW
Sbjct: 805 KNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 188/438 (42%), Gaps = 51/438 (11%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           +P +++T + ++     +   +  + +HA++I  ++   S +   LIS  S       A 
Sbjct: 58  RPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAE 117

Query: 84  SIFD---HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            +F+    F  +++  ++ ++     N      I  FV  L L + PN   Y  V ++ +
Sbjct: 118 DVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACS 177

Query: 141 SLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKT-RGAFKVFDETPEKNKSES 198
           +   + +GR     ++K+G  E D  V   L DM+V+   +   A+KVFD+  E N    
Sbjct: 178 NSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN---- 233

Query: 199 VLLWNVLINGCSKIGYLRKAVELF--------------------------GMMPKKNVAS 232
           V+ W ++I  C ++G+ R+A+  F                           +   K + S
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 233 W-----------VSLIDGFMR---KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE-A 277
           W            SL+D + +    G +    ++F++M +  V+SWTA+I G+ +N   A
Sbjct: 294 WAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLA 353

Query: 278 EKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            +A+ +F +M+  G V  N FT  SA  AC  +     G +V             ++  +
Sbjct: 354 TEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANS 413

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++ M+ K   +E A   F    EK+L+++   + G   +  +EQA +   ++        
Sbjct: 414 VISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVS 473

Query: 397 GTVFLAILTACWYSGQVK 414
              F ++L+     G ++
Sbjct: 474 AFTFASLLSGVANVGSIR 491



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 78/372 (20%), Positives = 143/372 (38%), Gaps = 20/372 (5%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I   H   N+ T +       + +  +  +Q+  Q     L ++S +   +IS       
Sbjct: 364 ITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDR 423

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A   F+  + KNL  +N  + G   N +F+        +    +  +  T+  +   
Sbjct: 424 MEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSG 483

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           VA++  +  G  +H  +VK G+  +  V   L  MY + G    A +VF+    +N    
Sbjct: 484 VANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRN---- 539

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ W  +I G +K G+  + +E F  M     K N  ++V+++      G + +    F 
Sbjct: 540 VISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFN 599

Query: 255 QMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M E   +      +  M++   + G    A      M     +A+     + L AC   
Sbjct: 600 SMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTM---PFQADVLVWRTFLGACRVH 656

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
              E G      I   D     A    L ++YA  G  E ++ +  + KE++L+      
Sbjct: 657 SNTELGKLAARKILELDPNEPAAY-IQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCS 715

Query: 370 W---GLAIHGRY 378
           W   G  IH  Y
Sbjct: 716 WIEVGDKIHKFY 727


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 200/633 (31%), Positives = 330/633 (52%), Gaps = 78/633 (12%)

Query: 78   SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            +I+ A  IF      +   +N +I  L +N + +  + H+  M +  + P+         
Sbjct: 430  AIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLS 489

Query: 138  SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK-- 195
            S A L LL+ G+ +HC  VK G++ D  V   L  MY + G     +KVF+   E ++  
Sbjct: 490  SCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVS 549

Query: 196  ---------------SESVLLWNVLING---CSKIGYLR------------------KAV 219
                           SE V ++N ++ G    +K+ ++                    AV
Sbjct: 550  WNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAV 609

Query: 220  ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAE 278
               G+M    V +  +LI  + + GD+     LF  M ++   +SW +MI+G+  NG  +
Sbjct: 610  MKHGVMEDNVVDN--ALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQ 667

Query: 279  KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
            +A+   + M+ +G   +  T    L+ACA V ALE G+ +H +   +       + +ALV
Sbjct: 668  EAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFGIRSHLESDVVVESALV 727

Query: 339  DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            DMY+KCG ++ AS +F    +++  +W +MI G A HG   +AI+ F++M+ S   PD  
Sbjct: 728  DMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRESPDHV 787

Query: 399  VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------- 448
             F+++L+AC ++G V+  L +F+ M  D+ I P ++H++ V++LL R G+          
Sbjct: 788  TFVSVLSACSHAGLVERGLEYFEMMP-DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQR 846

Query: 449  ---------------------DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487
                                 D       + +   LL+++P++P +YVL SN +AA G W
Sbjct: 847  MPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMW 906

Query: 488  KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
            +D A+ RT M++ + KK+ G S++ +N  VH F AG   H   KEI+ KL  ++   R  
Sbjct: 907  EDTAKARTAMRQATEKKEAGRSWVTLNDGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNA 966

Query: 546  GYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
            GY+P TE+ L++++EE +E L   HSEKLA+AF L +++ G  I+I+K L +CGDCH   
Sbjct: 967  GYVPLTEYALYDLEEENKEELLSYHSEKLAIAFVLTRSSSGP-IRIMKNLRVCGDCHIAF 1025

Query: 605  KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +Y S++  R+I+LRD+ RFH+FKDG CSC DYW
Sbjct: 1026 RYISQMISRQIILRDSIRFHHFKDGKCSCGDYW 1058



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 173/430 (40%), Gaps = 61/430 (14%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++ L+           +H ++I   L     +   L++S +    +  A  +FD    +N
Sbjct: 67  LLPLLRRGGDANSPENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERN 126

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRG 150
              +  L+ G   +   +     F  MLR      RP   T+  + ++        LG  
Sbjct: 127 AVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFA 186

Query: 151 L--HCLIVKSGVEYDAFVRVHLADMY--VQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +  H L+ K+    +  V   L  MY    +G    A +VFD TP ++    ++ WN L+
Sbjct: 187 VQVHGLVSKTEYASNTTVCNALISMYGSCTVGPPILAQRVFDGTPIRD----LITWNALM 242

Query: 207 NGCSKIGYLRKAVELFGMMPKKN-------------------------------VASWV- 234
           +  +K G +     LF  M + +                               V  WV 
Sbjct: 243 SVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVL 302

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       +L+  F R G   +A ++F  + +K  V+   +I G  +   +E+A+ 
Sbjct: 303 KSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVK 362

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR----VHNYISCNDF-GLKGAIGTAL 337
           +F    +  V  N  T V  LSA A+    E G+R    VH ++       LK A+   L
Sbjct: 363 IFVGTRNT-VDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGL 421

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           V+MYAKCG IE+AS +F   +  D ++W  +I  L  +G  E+A+ ++  M  S   P  
Sbjct: 422 VNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSN 481

Query: 398 TVFLAILTAC 407
              ++ L++C
Sbjct: 482 FALISSLSSC 491



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 91/410 (22%), Positives = 169/410 (41%), Gaps = 57/410 (13%)

Query: 49  QIHAQIILHNLFASSRITTQLIS---SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q+H  +      +++ +   LIS   S ++   I  A  +FD    ++L  +N L+   A
Sbjct: 188 QVHGLVSKTEYASNTTVCNALISMYGSCTVGPPI-LAQRVFDGTPIRDLITWNALMSVYA 246

Query: 106 ENSHFQSCISHFVFMLR----LSVRPNRLTY-PFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           +     S  + F  M R    + +RP   T+   ++ +  S    ++   +   ++KSG 
Sbjct: 247 KKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGC 306

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             D +V   L   + + G T  A  +F    +KN     +  N LI G  +  +  +AV+
Sbjct: 307 SSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKN----AVTLNGLIVGLVRQDFSEEAVK 362

Query: 221 LF--------------------------------------GMMPKKN-----VASWVSLI 237
           +F                                      G M +       +A    L+
Sbjct: 363 IFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLV 422

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           + + + G ++ A ++F+ M     +SW  +I+   QNG  E+A+  +  M  + +  ++F
Sbjct: 423 NMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNF 482

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
            ++S+LS+CA +  L AG +VH         L  ++   LV MY +CG +     VF   
Sbjct: 483 ALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSM 542

Query: 358 KEKDLLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            E D ++W  M+  +A       + ++ F  MM  G  P+   F+ +L A
Sbjct: 543 AEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAA 592



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 127/262 (48%), Gaps = 13/262 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T  ++++ +   +  +  +Q+HA ++ H +   + +   LIS  +    +     +F
Sbjct: 582 NKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLF 641

Query: 87  DHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
            + + +   I +N +I G   N + Q  +     M+      +  T+  +  + AS++ L
Sbjct: 642 TNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAAL 701

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G  LH   ++S +E D  V   L DMY + G+   A K+F+   ++N+      WN +
Sbjct: 702 ERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNE----FSWNSM 757

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           I+G ++ G  RKA+E+F  M +   +    ++VS++      G +++  E FE MP+ G+
Sbjct: 758 ISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFEMMPDHGI 817

Query: 262 VS----WTAMINGFSQNGEAEK 279
           +     ++ +I+   + G+ +K
Sbjct: 818 LPQIEHYSCVIDLLGRAGKIDK 839



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM---YSGT 393
           LV+ YAK   + AAS VF E  E++ ++WT ++ G  +HG  E+A + F+ M+    +G 
Sbjct: 102 LVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAMLREVQAGC 161

Query: 394 EPDGTVFLAILTACWYSGQVKLAL 417
            P    F  +L AC   G  +L  
Sbjct: 162 RPTSFTFGTLLRACQDGGPDRLGF 185



 Score = 40.0 bits (92), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 97/245 (39%), Gaps = 38/245 (15%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++HA  I  +L +   + + L+   S    +DYA  +F+  T +N   +N +I G A + 
Sbjct: 706 ELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHG 765

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  I  F  MLR    P+ +T+      V+ LS  S     H  +V+ G+EY   +  
Sbjct: 766 LGRKAIEIFEEMLRSRESPDHVTF------VSVLSACS-----HAGLVERGLEYFEMMPD 814

Query: 169 H-----------LADMYVQLGKTRGAFKVFDETP-EKNKSESVLLWNVLINGC------S 210
           H           + D+  + GK     +     P E N     L+W  ++  C      S
Sbjct: 815 HGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPN----ALIWRTVLVACRQSKDGS 870

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG---DLKKAGELFEQMPEKGVV--SWT 265
            I   R+A  +   +  +N  ++V   +     G   D  KA     Q  EK     SW 
Sbjct: 871 NIDLGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWV 930

Query: 266 AMING 270
            + +G
Sbjct: 931 TLNDG 935


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 190/580 (32%), Positives = 296/580 (51%), Gaps = 76/580 (13%)

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +R  Y  + K      LL+ GR +H  +++S   +D  +   L +MY + G    A KVF
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-------------------- 227
           D+ PE++     + W  LI+G S+      A+ LF  M +                    
Sbjct: 110 DKMPERD----FVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAE 165

Query: 228 -------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                               NV    +L+D + R G +  A  +F+ +  +  VSW A+I
Sbjct: 166 RRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALI 225

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G ++    EKAL +F  ML  G R + F+  S   AC+  G LE G  VH Y+  +   
Sbjct: 226 AGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEK 285

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           L    G  L+DMYAK G+I  A  +F    ++D+++W +++   A HG   +A+ +F++M
Sbjct: 286 LVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEM 345

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  P+   FL++LTAC +SG +    ++++ M+ D  +  +  H+  +V+LL R G 
Sbjct: 346 RRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAW-HYVTIVDLLGRAGD 404

Query: 449 DSQG-------------------------YQNSQ---NSFTKLLQLKPKHPSSYVLLSNI 480
            ++                          ++N++    +   + +L P  P  +V+L NI
Sbjct: 405 LNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNI 464

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDI 538
           YA+ GRW D ARVR  M+   +KK+P  S++E+   +H F A    H   +EI  K E++
Sbjct: 465 YASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEV 524

Query: 539 MAGAREQGYMPGTEWVL-HNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
           +A  +E GY+P T  V+ H  ++E+E  L  HSEK+ALAF L+ T PG+TI I K + +C
Sbjct: 525 LAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 584

Query: 598 GDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           GDCHS +K ASK   REI++RDT RFH+FKDG CSC+DYW
Sbjct: 585 GDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 141/330 (42%), Gaps = 16/330 (4%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+H   +     ++  + + L+   + +  +D A  +FD    +N   +N LI G A   
Sbjct: 173 QLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRC 232

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  +  F  MLR   RP+  +Y  +  + +S   L  G+ +H  ++KSG +  AF   
Sbjct: 233 GTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGN 292

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
            L DMY + G    A K+FD   +++    V+ WN L+   ++ G+  +AV  F  M   
Sbjct: 293 TLLDMYAKSGSIHDARKIFDRLAKRD----VVSWNSLLTAYAQHGFGNEAVCWFEEMRRG 348

Query: 227 --KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV--SW--TAMINGFSQNGEAEKA 280
             + N  S++S++      G L +    +E M + G+V  +W    +++   + G+  +A
Sbjct: 349 GIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRA 408

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           L    +M    +        + L+AC      E G     ++   D    G     L ++
Sbjct: 409 LRFIEEM---PIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGP-HVILYNI 464

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           YA  G    A+ V  + KE  +    A  W
Sbjct: 465 YASGGRWNDAARVRKKMKESGVKKEPACSW 494


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  311 bits (797), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 207/712 (29%), Positives = 345/712 (48%), Gaps = 131/712 (18%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           +++ SN+ K L   H  I   NL +SS  + +  S      S               L  
Sbjct: 1   MMNHSNARK-LSTFHGLIFKSNLLSSSYASQKRFSDKKFFDS--------------KLED 45

Query: 97  FNVLIRGLAENSHF---------QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
             V++  L   + F         Q  +   V +L  + +P   TY  + +  +    L  
Sbjct: 46  GGVVVERLCRANRFGEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEE 105

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ +H  I  SG      +   +  MY + G    A KVFDE PE++    V  WNV++N
Sbjct: 106 GKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERD----VCSWNVMVN 161

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---------- 257
           G +++G L +A  LF  MP+++  SW +++ G+++K   ++A  L+  M           
Sbjct: 162 GYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIF 221

Query: 258 ------------------------------EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                                         +   V W+++++ + + G  ++A  +F ++
Sbjct: 222 TVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 281

Query: 288 LDAGV-------------------------------RANDFTVVSALSACAKVGALEAGV 316
           +D  V                               R N++T    L+ACA +   E G 
Sbjct: 282 IDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGR 341

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +VH Y++   F       ++L+DMY KCGNIE+A  V     + DL++ T++I G A +G
Sbjct: 342 QVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNG 401

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           + ++A++YF  ++ SGT+PD   F+ +L+AC ++G V+  L FF S+   + +  +  H+
Sbjct: 402 KPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHY 461

Query: 437 TVVVNLLSRVGQDSQ-------------------------GYQN---SQNSFTKLLQLKP 468
           T +V+LL+R G+  Q                          Y N   ++ +  +L +++P
Sbjct: 462 TCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEP 521

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHK 526
           ++P +YV ++NIYAA G+W++  ++R  MQ   I K PG S+ E+    H F A    H 
Sbjct: 522 ENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHP 581

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPG 585
           +  +I   L ++    +E+GY+P T  VLH++++E KEE L  HSEKLA+AF ++ T  G
Sbjct: 582 MYNQIIEFLGELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEG 641

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           T IK+ K L  C DCHS +K+ SKI++R+I +RD TRFH F++G CSCRDYW
Sbjct: 642 TAIKVFKNLRSCVDCHSAIKFISKITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 15/259 (5%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           I S  +P N  T + +++      + +  RQ+H  +        S  ++ LI   +   +
Sbjct: 313 IGSCERP-NEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGN 371

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A  + D     +L     LI G A+N      + +F  +L+   +P+ +T+  V  +
Sbjct: 372 IESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFVNVLSA 431

Query: 139 VASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
                L+  G    + +  K  + + +     L D+  + G+      V  E P K    
Sbjct: 432 CTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMK---P 488

Query: 198 SVLLWNVLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
           S  LW  ++ GCS  G +      A ELF + P +N  ++V++ + +   G  ++ G++ 
Sbjct: 489 SKFLWASVLGGCSTYGNIDLAEEAAQELFKIEP-ENPVTYVTMANIYAAAGKWEEEGKMR 547

Query: 254 EQMPEKGVV-----SWTAM 267
           ++M E G+      SWT +
Sbjct: 548 KRMQEIGITKKPGSSWTEI 566


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 191/658 (29%), Positives = 326/658 (49%), Gaps = 81/658 (12%)

Query: 56  LHNLFASSRITTQLISSASLHK------SIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           LH+    + ++   I+  SL         I+ A  IF+     N+ ++N+++    + S 
Sbjct: 267 LHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISD 326

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
                  F  M    + PN+ TYP + ++      + LG  +H L +K+G E D +V   
Sbjct: 327 LAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGV 386

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--------------------- 208
           L DMY + G    A K+ +   +++    V+ W  +I G                     
Sbjct: 387 LIDMYSKYGCLDKARKILEMLEKRD----VVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 209 --------------CSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAG 250
                         C+ I  +R+ +++   +       +++ W +L++ + R G  ++A 
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAF 502

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF ++  K  ++W  +I+GF Q+   ++AL +F +M  AG + N FT +SA+SA A + 
Sbjct: 503 SLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLA 562

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            ++ G +VH          +  +  AL+ +Y KCG+IE A ++F E   ++ ++W  +I 
Sbjct: 563 DIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWNTIIT 622

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
             + HGR  +A+  F +M   G +P+   F+ +L AC + G V+  L++F SM   Y + 
Sbjct: 623 SCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGLN 682

Query: 431 PSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQNSFTK 462
           P   H+  VV++L R GQ  +                          ++N    + +   
Sbjct: 683 PIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGELAAKH 742

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           LL+L+P   +SYVLLSN YA  G+W +  +VR +M+ R I+K+PG S+IEV   VH F  
Sbjct: 743 LLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVHAFFV 802

Query: 523 GG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALG-CHSEKLALAFGL 579
           G   H L+ +I+  L ++     + GY      + H  ++E+++     HSEKLA+AFGL
Sbjct: 803 GDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAVAFGL 862

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +   P   ++++K L +C DCHS MK  S++++REIVLRD  RFH+F  G+CSC DYW
Sbjct: 863 MTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGDYW 920



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 121/435 (27%), Positives = 200/435 (45%), Gaps = 54/435 (12%)

Query: 11  TAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           TA+ PT  + SS           ++S         Q R IHAQ+      + + +   LI
Sbjct: 138 TAVIPTPYVLSS-----------VLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALI 186

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
           +      S   A  +F      +   FN LI G A+  H +  +  F  M    +RP+ +
Sbjct: 187 ALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCV 246

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T   +  + AS+  L  G+ LH  ++K+G+ +D      L D+YV+ G    A  +F+  
Sbjct: 247 TVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLG 306

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------------ 232
              N    V+LWN+++    +I  L K+ E+FG M    +                    
Sbjct: 307 DRTN----VVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 233 -------------------WVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                              +VS  LID + + G L KA ++ E + ++ VVSWT+MI G+
Sbjct: 363 ELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGY 422

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
            Q+   E+ALA F +M D GV  ++  + SA SACA + A+  G+++H  +  + +    
Sbjct: 423 VQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADI 482

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
           +I   LV++YA+CG  E A  +F E + KD +TW  +I G      Y+QA+  F KM  +
Sbjct: 483 SIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQA 542

Query: 392 GTEPDGTVFLAILTA 406
           G + +   F++ ++A
Sbjct: 543 GAKYNVFTFISAISA 557



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 183/444 (41%), Gaps = 44/444 (9%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           +IHA  ++  L A   I   LI   + +  +  A  +F   + ++   +  ++ G A++ 
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS----LLSLGRGLHCLIVKSGVEYDA 164
             +     +  M   +V P     P+V  SV S      L + GR +H  + K     + 
Sbjct: 124 LGKEAFRLYSQMHWTAVIPT----PYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSET 179

Query: 165 FVRVHLADMYV-------------------------------QLGKTRGAFKVFDETPEK 193
           FV   L  +Y+                               Q G    A ++FDE    
Sbjct: 180 FVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLS 239

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKA 249
                 +    L+  C+ +G L+K  +L   + K  ++    +  SL+D +++ GD++ A
Sbjct: 240 GLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETA 299

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            ++F       VV W  M+  + Q  +  K+  +F QM   G+  N FT    L  C   
Sbjct: 300 HDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCT 359

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G +E G ++H+    N F     +   L+DMY+K G ++ A  +    +++D+++WT+MI
Sbjct: 360 GQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMI 419

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G   H   E+A+  FK+M   G  PD     +  +AC     ++  L     +    + 
Sbjct: 420 AGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGY- 478

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGY 453
              +     +VNL +R G+  + +
Sbjct: 479 AADISIWNTLVNLYARCGRSEEAF 502



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/298 (21%), Positives = 129/298 (43%), Gaps = 16/298 (5%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +NI      S      + +Q  QIHA++ +    A   I   L++  +     + A S+F
Sbjct: 446 DNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLF 505

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                K+   +N LI G  ++  ++  +  F+ M +   + N  T+     ++A+L+ + 
Sbjct: 506 REIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIK 565

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H   VK+G   +  V   L  +Y + G    A  +F E   +N+    + WN +I
Sbjct: 566 QGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNE----VSWNTII 621

Query: 207 NGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
             CS+ G   +A++LF  M     K N  +++ ++      G +++    F+ M     +
Sbjct: 622 TSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNVYGL 681

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +     +  +++   + G+ ++A     +M    + AN     + LSAC     +E G
Sbjct: 682 NPIPDHYACVVDILGRAGQLDRARRFVDEM---PITANAMIWRTLLSACKVHKNIEIG 736



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 299 VVSALSACAKVGALEAGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           +  AL AC   G     V  +H        G    IG  L+D+YAK G +  A  VF E 
Sbjct: 45  LTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKEL 104

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             +D ++W AM+ G A  G  ++A + + +M ++   P   V  ++L+AC
Sbjct: 105 SSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIPTPYVLSSVLSAC 154


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 197/580 (33%), Positives = 297/580 (51%), Gaps = 77/580 (13%)

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL-ADMYVQLGKT 180
           R S+ P+   Y  + K    L  +  GR +H  +V S    +  V  ++  +MY + G  
Sbjct: 80  RGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCL 139

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------------------ 222
             A ++FDE P K+    ++ W  LI G S+    R A+ LF                  
Sbjct: 140 DDARRMFDEMPTKD----MVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSL 195

Query: 223 --------GMMPKKNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGV 261
                   G+ P   + ++              +L+D + R G +  A   F+ MP K  
Sbjct: 196 LKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSE 255

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW A+I+G ++ GE E AL + ++M     +   FT  S LSACA +GALE G  VH +
Sbjct: 256 VSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAH 315

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           +  +   L   IG  L+DMYAK G+I+ A  VF    + D+++W  M+ G A HG  ++ 
Sbjct: 316 MIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKET 375

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F++M+  G EP+   FL +LTAC +SG +   L +F+ M+  Y +EP V H+   V+
Sbjct: 376 LDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMK-KYKVEPDVPHYVTFVD 434

Query: 442 LLSRVGQDSQG-------------------------YQNSQ---NSFTKLLQLKPKHPSS 473
           LL RVG   +                          ++N +    +  +  +L P     
Sbjct: 435 LLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGP 494

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEI 531
            +LLSNIYA+ GRW+DVA+VR +M+   +KK P  S++E+   VH F A    H   KEI
Sbjct: 495 RMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEI 554

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
             K E+I    +E GY+P T  VL  + ++E+EE L  HSEKLALAF L+ T  G+ I+I
Sbjct: 555 RGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRI 614

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
            K + +CGDCH+ +K+ SK+  REI++RDT RFH F+DG+
Sbjct: 615 KKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 154/382 (40%), Gaps = 51/382 (13%)

Query: 45  KQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           +Q R +HA ++    L N      I   + +       +D A  +FD    K++  +  L
Sbjct: 104 EQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCG---CLDDARRMFDEMPTKDMVTWTAL 160

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           I G ++N+  +  +  F  MLRL  +PN  T   + K+  S   L  G  LH   +K G 
Sbjct: 161 IAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGY 220

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           +   +V   L DMY + G    A   FD  P K    S + WN LI+G ++ G    A+ 
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTK----SEVSWNALISGHARKGEGEHALH 276

Query: 221 LFGMMPKKNV----------------------ASWV-----------------SLIDGFM 241
           L   M +KN                         WV                 +L+D + 
Sbjct: 277 LLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYA 336

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           + G +  A  +F+++ +  VVSW  M+ G +Q+G  ++ L  F QML  G+  N+ + + 
Sbjct: 337 KAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLC 396

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EK 360
            L+AC+  G L+ G+     +               VD+  + G ++ A     E   E 
Sbjct: 397 VLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEP 456

Query: 361 DLLTWTAMIWGLAIHGRYEQAI 382
               W A++    +H   E  +
Sbjct: 457 TAAVWGALLGACRMHKNMELGV 478



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 144/356 (40%), Gaps = 39/356 (10%)

Query: 36  SLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           SL+ +S S   L    Q+HA  + +   +S  + + L+   +    +D A   FD    K
Sbjct: 194 SLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTK 253

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +   +N LI G A     +  +     M R + +P   TY  V  + AS+  L  G+ +H
Sbjct: 254 SEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVH 313

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++KSG++  AF+   L DMY + G    A +VFD   + +    V+ WN ++ GC++ 
Sbjct: 314 AHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPD----VVSWNTMLTGCAQH 369

Query: 213 GYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSW 264
           G  ++ ++ F  M +     N  S++ ++      G L +    FE M     E  V  +
Sbjct: 370 GLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHY 429

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV-GALEAGVRVHNYIS 323
              ++   + G           +LD   RA  F     +   A V GAL    R+H  + 
Sbjct: 430 VTFVDLLGRVG-----------LLD---RAERFIREMPIEPTAAVWGALLGACRMHKNME 475

Query: 324 CNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
              +  + A             L ++YA  G     + V    KE  +    A  W
Sbjct: 476 LGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSW 531



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 81/182 (44%), Gaps = 3/182 (1%)

Query: 28  NITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD 87
           + T + ++S   S  + +Q + +HA +I   L   + I   L+   +   SID A  +FD
Sbjct: 290 HFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFD 349

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
                ++  +N ++ G A++   +  +  F  MLR+ + PN +++  V  + +   LL  
Sbjct: 350 RLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDE 409

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G     L+ K  VE D    V   D+  ++G    A +   E P +    +  +W  L+ 
Sbjct: 410 GLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIE---PTAAVWGALLG 466

Query: 208 GC 209
            C
Sbjct: 467 AC 468


>gi|224118652|ref|XP_002331415.1| predicted protein [Populus trichocarpa]
 gi|222873629|gb|EEF10760.1| predicted protein [Populus trichocarpa]
          Length = 458

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/434 (39%), Positives = 261/434 (60%), Gaps = 33/434 (7%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + GDL  A ++F+    K V  WT++I G++  G   +AL +F ++L   ++ N
Sbjct: 25  LLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLLKTAIKPN 84

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T+ + LSACA +G+L+ G  +  YI  N F     + T+L+ M++KCG+I  A  VF 
Sbjct: 85  GATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQVQTSLIHMFSKCGSIGKAISVFE 144

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVK 414
              +KDL  W++MI G AIHG  E+A+  F KM+     +PD  VF +IL AC + G V+
Sbjct: 145 RISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPDAVVFTSILLACSHVGLVE 204

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQNSQNS 459
             L FF SM+ D+ I PSV+H+  +V+LL R GQ                +Q +    ++
Sbjct: 205 DGLKFFKSMQKDFGIVPSVEHYMCLVDLLGRAGQFELALKTIRVMPVKLQAQVWAPFLSA 264

Query: 460 FT-------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
            T             KLL + P   ++YVL++N+Y + G+WK+ A  R+LM  R + K P
Sbjct: 265 CTKHCNLELGELAARKLLYMNPGSHANYVLMANLYTSMGKWKEAAVTRSLMIDRGLVKAP 324

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKE 563
           GWS +E+NG VH F AG   H  + +I+ KLE+I     E GY+P T+ V+H++ +EEKE
Sbjct: 325 GWSQVEINGSVHVFIAGDRSHTQSIDIYKKLEEINLKLAEAGYVPETDTVIHDLEREEKE 384

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
           EAL  HSE+LA+AFGLI T  G+T++I+K    C DCHS +K+ SKI+ R +++RD +RF
Sbjct: 385 EALKVHSERLAIAFGLISTEAGSTLRIMKNHRTCVDCHSALKFISKITGRHLIVRDGSRF 444

Query: 623 HYFKDGTCSCRDYW 636
           H+F+ G C+C+D+W
Sbjct: 445 HHFESGKCTCKDFW 458



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 108/242 (44%), Gaps = 47/242 (19%)

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH LI K G E    +   L  MY + G    A KVFD    K    +V LW  +I G +
Sbjct: 6   LHSLIFKCGCENKDPLDNLLLGMYAKCGDLISARKVFDMALVK----TVFLWTSIIGGYT 61

Query: 211 KIGY--------------------------LRKAVELFGMMPKKNVASWV---------- 234
            +GY                          L    +L  +   K +  ++          
Sbjct: 62  HMGYPAEALLLFKKLLKTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGFQSDRQ 121

Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              SLI  F + G + KA  +FE++ +K + +W++MING++ +G AE+AL +F +ML+  
Sbjct: 122 VQTSLIHMFSKCGSIGKAISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIK 181

Query: 292 -VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIE 348
            ++ +     S L AC+ VG +E G++    +   DFG+  ++     LVD+  + G  E
Sbjct: 182 EIKPDAVVFTSILLACSHVGLVEDGLKFFKSMQ-KDFGIVPSVEHYMCLVDLLGRAGQFE 240

Query: 349 AA 350
            A
Sbjct: 241 LA 242



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 84/177 (47%), Gaps = 9/177 (5%)

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
           K  +   L+ MYAKCG++ +A  VF     K +  WT++I G    G   +A+  FKK++
Sbjct: 18  KDPLDNLLLGMYAKCGDLISARKVFDMALVKTVFLWTSIIGGYTHMGYPAEALLLFKKLL 77

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
            +  +P+G     IL+AC   G + +     + +  + F +   +  T ++++ S+ G  
Sbjct: 78  KTAIKPNGATLATILSACADLGSLDMGKEIEEYILSNGF-QSDRQVQTSLIHMFSKCGSI 136

Query: 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD-VARVRTLMQRRSIKKD 505
            +       + +   ++  K  +++  + N YA  G  ++ +     +++ + IK D
Sbjct: 137 GK-------AISVFERISDKDLAAWSSMINGYAIHGMAEEALGLFHKMLEIKEIKPD 186


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 196/687 (28%), Positives = 342/687 (49%), Gaps = 83/687 (12%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N IT  ++++ +   ++ ++ + IH+ +          + T L+++ +   S+  A  +
Sbjct: 8   ANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKV 67

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    +++  +N +I   + +         F  M     R +R+T+  +  +  +   L
Sbjct: 68  FDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENL 127

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +   I ++  E D FV   L  MY +      A +VF    +KN    ++ W+ +
Sbjct: 128 QHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKN----LITWSAI 183

Query: 206 INGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFM-------------------- 241
           I   +  G+  +A+  F MM ++    N  +++SL++GF                     
Sbjct: 184 ITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGL 243

Query: 242 -----------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                              G+L  A  + ++M E+ + +W  +ING++ +G + +AL  +
Sbjct: 244 DDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETY 303

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAI--GTALVDMY 341
            ++    +  +  T +S L+AC    +L  G  +H N + C   GL   +    AL +MY
Sbjct: 304 QRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVEC---GLDSDVIVKNALTNMY 360

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           +KCG++E A  +F     +  ++W  M+   A HG  E+ ++  +KM   G + +G  F+
Sbjct: 361 SKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFV 420

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQNS 459
           ++L++C ++G +     +F S+  D  IE   +H+  +V+LL R G  Q+++ Y +   S
Sbjct: 421 SVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPS 480

Query: 460 --------------------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                                       KLL+L P + S+ V+LSNIY+  G WK+ A++
Sbjct: 481 EPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKL 540

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R  M  R +KK PG S I+V   VH F      H  A EI+ K+E++    RE GY+P T
Sbjct: 541 RRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDT 600

Query: 552 EWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           + VLH++ EE++E+ L  HSEKLA+AFGLI T   +++ I K L +C DCH+  K+ SKI
Sbjct: 601 KMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKI 660

Query: 611 SQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + REIV+RD  RFH+F+DG+CSC+DYW
Sbjct: 661 TGREIVVRDNHRFHHFRDGSCSCKDYW 687



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 99/435 (22%), Positives = 182/435 (41%), Gaps = 54/435 (12%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
           ML   V+ N +T+  V  SV     L  G+ +H  + +S    D FV   L + Y + G 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 180 TRGAFKVFDETPEKNKSESVLLWNVLING-----------------------CSKIGYLR 216
              A KVFD  P      SV  WN +I+                        C ++ +L 
Sbjct: 61  LTDARKVFDGMP----CRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLS 116

Query: 217 ---KAVELFGMMPKKNVASWVS-------------LIDGFMRKGDLKKAGELFEQMPEKG 260
                V    +   K+V   +S             LI  + R    + A ++F +M +K 
Sbjct: 117 ILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKN 176

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +++W+A+I  F+ +G   +AL  F  M   G+  N  T +S L+       LE   R+H 
Sbjct: 177 LITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHL 236

Query: 321 YISCNDFGLKGAIGTALVDMYAKC--GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
            I+ +       +  ALV++Y +C  G ++ A ++  E  E+ +  W  +I G  +HGR 
Sbjct: 237 LITEHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRS 296

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +A++ ++++       D   F+++L AC  S  +         M     +E  +    +
Sbjct: 297 REALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEG-----KMIHSNAVECGLDSDVI 351

Query: 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
           V N L+ +       +N++  F     +  +   S+  +   YA  G  ++V ++   M+
Sbjct: 352 VKNALTNMYSKCGSMENARRIFD---SMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKME 408

Query: 499 RRSIKKDPGWSYIEV 513
           +  +K + G +++ V
Sbjct: 409 QEGVKLN-GITFVSV 422



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 105/242 (43%), Gaps = 9/242 (3%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P + +T   +++   SS S  + + IH+  +   L +   +   L +  S   S++ A  
Sbjct: 312 PVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARR 371

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           IFD    ++   +N +++  A++   +  +     M +  V+ N +T+  V  S +   L
Sbjct: 372 IFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGL 431

Query: 145 LSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           ++ G +  H L    G+E        L D+  + GK + A K   + P + +   ++ W 
Sbjct: 432 IAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPE---IVTWA 488

Query: 204 VLINGCSKIGYLRK----AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            L+  C     L +    A +L  + P  + AS V L + +  +GD K A +L   M  +
Sbjct: 489 SLLGACRVHKDLDRGKLAARKLLELDPGNSSAS-VVLSNIYSERGDWKNAAKLRRAMASR 547

Query: 260 GV 261
            V
Sbjct: 548 RV 549


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 196/639 (30%), Positives = 329/639 (51%), Gaps = 73/639 (11%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + + LI   + +  +  A  +FD    K + ++ +LI    +    +  +  F+  L   
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDG 249

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ--LGKTRG 182
             P+R T   +  +   L  + LG  LH L ++ G+  DA V   L DMY +  +G+   
Sbjct: 250 FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMD 309

Query: 183 -AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR-KAVELFGMM----PKKNVASWVSL 236
            A KVF+  P+ +    V+ W  LI+G  + G    K + LFG M     K N  ++ S+
Sbjct: 310 YANKVFERMPKND----VISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSI 365

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQM----- 287
           +       D     ++   + +    S      A+++ ++++G  E+A  +F Q+     
Sbjct: 366 LKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSM 425

Query: 288 ------------------LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
                             +D G+ ++ F   S +SA A VG L  G ++H       FG 
Sbjct: 426 IPCITEGRDFPLDHRIVRMDVGISSSTFA--SLISAAASVGMLTKGQQLHAMSLKAGFGS 483

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +  +LV MY++CG +E A   F E K++++++WT+MI GLA HG  E+A+  F  M+
Sbjct: 484 DRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMI 543

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-- 447
            +G +P+   ++A+L+AC + G V+    +F SM+ D+ + P ++H+  +V+LL+R G  
Sbjct: 544 LTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIV 603

Query: 448 --------------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481
                                     +     +  + +   +++L+P+ P+ YVLLSN+Y
Sbjct: 604 KEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLY 663

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIM 539
           A  G W +VAR+R+ M+  ++ K+ G S++EV    H F AG   H  A++I+ KL+ ++
Sbjct: 664 ADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLV 723

Query: 540 AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              +  GY+P T  VLH++ +E KE+ L  HSEK+A+AFGLI T+    I+I K L +C 
Sbjct: 724 RQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCA 783

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCHS +KY SK ++REI+LRD+ RFH  KDG CSC +YW
Sbjct: 784 DCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 138/309 (44%), Gaps = 49/309 (15%)

Query: 145 LSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           L LGR LH  +++  + + DA V   L  +Y + G    A  VFD          ++ W 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGM---RGLRDIVSWT 120

Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----------------------------------- 228
            + +  ++ G  R ++ L G M +                                    
Sbjct: 121 AMASCLARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHK 180

Query: 229 ------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                 +VA   +LID   R GDL  A ++F+ + EK VV WT +I+ + Q   AE+A+ 
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F   L+ G   + +T+ S +SAC ++G++  G+++H+            +   LVDMYA
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYA 300

Query: 343 KCG---NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE-QAIQYFKKMMYSGTEPDGT 398
           K      ++ A+ VF    + D+++WTA+I G    G  E + +  F +M+    +P+  
Sbjct: 301 KSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHI 360

Query: 399 VFLAILTAC 407
            + +IL +C
Sbjct: 361 TYSSILKSC 369



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 122/255 (47%), Gaps = 13/255 (5%)

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEK 279
           L G +  ++     SL+  + R G +  A  +F+ M   + +VSWTAM +  ++NG    
Sbjct: 75  LRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERG 134

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGTA 336
           +L +  +ML++G+  N +T+ +A  AC     L   V        +  GL G   A+G+A
Sbjct: 135 SLLLIGEMLESGLLPNAYTLCAAAHACFP-HELYCLVGGVVLGLVHKMGLWGTDVAVGSA 193

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+DM A+ G++ +A  VF    EK ++ WT +I         E+A++ F   +  G EPD
Sbjct: 194 LIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPD 253

Query: 397 GTVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
                ++++AC   G V+L L     ++R     +  V    V +   S +GQ +  Y N
Sbjct: 254 RYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQ-AMDYAN 312

Query: 456 SQNSFTKLLQLKPKH 470
                 K+ +  PK+
Sbjct: 313 ------KVFERMPKN 321



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 180/412 (43%), Gaps = 52/412 (12%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +  S KP N+IT + I+    S +     RQ+HA +I  N  ++  +   L+S  +    
Sbjct: 351 LNESIKP-NHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGC 409

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +F+    ++      +I  + E   F   + H +  +R+ V  +  T+  +  +
Sbjct: 410 MEEARRVFNQLYERS------MIPCITEGRDFP--LDHRI--VRMDVGISSSTFASLISA 459

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            AS+ +L+ G+ LH + +K+G   D FV   L  MY + G    A + F+E  ++N    
Sbjct: 460 AASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRN---- 515

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ W  +I+G +K GY  +A+ LF  M     K N  ++++++      G +++  E F 
Sbjct: 516 VISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFR 575

Query: 255 QMP-EKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M  + G++     +  M++  +++G  ++AL    +M    ++A+     + L AC   
Sbjct: 576 SMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEM---PLKADALVWKTLLGACRSH 632

Query: 310 GALEAG-VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
             +E G +   N +         A    L ++YA  G  +  + +    ++ +L   T +
Sbjct: 633 DNIEVGEITAKNVVELEP--RDPAPYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGL 690

Query: 369 IW-------------------GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            W                      I+G+ +  ++  K M Y    PD ++ L
Sbjct: 691 SWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMGYV---PDTSIVL 739


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 185/535 (34%), Positives = 286/535 (53%), Gaps = 74/535 (13%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L +MYV+      A ++FD+ P++N    V+ W  +I+  SK    +KA+EL  +M + N
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRN----VISWTTMISAYSKCKIHQKALELLVLMLRDN 157

Query: 230 VASWV------------------------------------SLIDGFMRKGDLKKAGELF 253
           V   V                                    +LID F + G+ + A  +F
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           ++M     + W ++I GF+QN  ++ AL +F +M  AG  A   T+ S L AC  +  LE
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G++ H +I   D  L   +  ALVDMY KCG++E A  VF + KE+D++TW+ MI GLA
Sbjct: 278 LGMQAHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            +G  ++A++ F++M  SGT+P+    + +L AC ++G ++    +F SM+  Y I+P  
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395

Query: 434 KHHTVVVNLLSRVGQ---------------DSQGYQN-------------SQNSFTKLLQ 465
           +H+  +++LL + G+               D+  ++              ++ +  K++ 
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA 455

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L P+   +Y LLSNIYA   +W  V  +RT M+ R IKK+PG S+IEVN  +H F  G  
Sbjct: 456 LDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQT 582
            H    E+  KL  ++      GY+P T +VL +++ E+ E++L  HSEKLALAFGL+  
Sbjct: 516 SHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTL 575

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
                I+I K L ICGDCH   K ASK+  R IV+RD  R+H+F+DG CSC DYW
Sbjct: 576 PIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 166/363 (45%), Gaps = 48/363 (13%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD    +N+  +  +I   ++    Q  +   V MLR +VRPN  TY  V +S
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
              +S +   R LHC I+K G+E D FVR  L D++ +LG+   A  VFDE      +  
Sbjct: 172 CNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV----TGD 224

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------------------------------GMMPKK 228
            ++WN +I G ++      A+ELF                              GM    
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 284

Query: 229 NVASWV-------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           ++  +        +L+D + + G L+ A  +F QM E+ V++W+ MI+G +QNG +++AL
Sbjct: 285 HIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
            +F +M  +G + N  T+V  L AC+  G LE G      +    +G+         ++D
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK-KLYGIDPVREHYGCMID 403

Query: 340 MYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           +  K G ++ A  +  E + E D +TW  ++    +      A    KK++    E  GT
Sbjct: 404 LLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGT 463

Query: 399 VFL 401
             L
Sbjct: 464 YTL 466



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 15/261 (5%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++ S N    +R +H  II   L +   + + LI   +     + ALS+FD     +  
Sbjct: 167 SVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N +I G A+NS     +  F  M R      + T   V ++   L+LL LG   H  I
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           VK   + D  +   L DMY + G    A +VF++  E++    V+ W+ +I+G ++ GY 
Sbjct: 287 VK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERD----VITWSTMISGLAQNGYS 340

Query: 216 RKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTA 266
           ++A++LF  M     K N  + V ++      G L+     F  M +   +      +  
Sbjct: 341 QEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGC 400

Query: 267 MINGFSQNGEAEKALAMFFQM 287
           MI+   + G+ + A+ +  +M
Sbjct: 401 MIDLLGKAGKLDDAVKLLNEM 421


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  311 bits (796), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 266/451 (58%), Gaps = 32/451 (7%)

Query: 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
           A +LF  +  +N+    ++I G+ R G ++ A  +F+QM EK +V W+AMI+G++++ + 
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           ++AL +F +M   G++ +  T++S +SACA++G L+    +H Y+  N  G    +  AL
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNAL 121

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           +DMYAKCGN+ AA  VF + + +++++WT+MI   AIHG    A+++F +M     +P+G
Sbjct: 122 IDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNG 181

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGY-- 453
             F+ +L AC ++G V+     F SM  ++ I P  +H+  +V+L  R    +D+     
Sbjct: 182 VTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVE 241

Query: 454 ----------------------QNSQNSFT--KLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                                 +N    F   ++L+L+P H  + V LSNIYA + RW+D
Sbjct: 242 TMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQD 301

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGY 547
           V  +R LM++R I K+ G S IE+N  V+ F      HK A +I+ KL++++   +  GY
Sbjct: 302 VGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGY 361

Query: 548 MPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
            P T  VL +++EE K+E +  HSEKLAL +GL+    G+ I+IVK L +C DCH+ +K 
Sbjct: 362 TPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKL 421

Query: 607 ASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            SK+   EI++RD TRFH++K G CSC DYW
Sbjct: 422 VSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 104/255 (40%), Gaps = 45/255 (17%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T +IS  S    ++ A  IFD    K+L  ++ +I G AE+   Q  ++ F  M    
Sbjct: 16  VLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG 75

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           ++P+++T   V  + A L +L   + +H  + K+G+     V   L DMY + G    A 
Sbjct: 76  IKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAAR 135

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------ 232
            VF    EK +S +V+ W  +IN  +  G    A++ F  M  +N+              
Sbjct: 136 GVF----EKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 233 ----------------------------WVSLIDGFMRKGDLKKAGELFEQMP-EKGVVS 263
                                       +  ++D F R   L+ A EL E MP    VV 
Sbjct: 192 SHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVI 251

Query: 264 WTAMINGFSQNGEAE 278
           W +++     +GE E
Sbjct: 252 WGSLMAACQIHGENE 266


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 193/567 (34%), Positives = 294/567 (51%), Gaps = 66/567 (11%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    K++  ++ LI    +N  ++  I  FV M ++ V  + +       + A+
Sbjct: 194 ACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACAN 253

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L ++++G+ +H L +K G E    ++  L  MY + G    A K+FDE            
Sbjct: 254 LLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDE------------ 301

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                       YL             ++ SW S+I G+++   +  A  +F+ MPEK V
Sbjct: 302 -----------AYLL------------DLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 338

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW++MI+G++QN   ++ LA+F +M  +G + ++ T+VS +SACA++ ALE G  VH Y
Sbjct: 339 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 398

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  N   +   +GT L+DMY KCG +E A  VF    EK + TW A+I GLA++G  E +
Sbjct: 399 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 458

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F  M      P+   F+ +L AC + G V    + F SM  D+ I+P+VKH+  +V+
Sbjct: 459 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVD 518

Query: 442 LLSRVG--QDSQGYQN--------------------------SQNSFTKLLQLKPKHPSS 473
           LL R G  Q+++   N                           +    KL++L+P H   
Sbjct: 519 LLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGF 578

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEI 531
           +VLLSNIYA++G+W DV  +R +M +  + K PG S IE NG +H F AG   H     I
Sbjct: 579 HVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAI 638

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
              L ++    + +GY P    VL ++ +EEKE  L  HSEKLA+AFGLI  +P T I+I
Sbjct: 639 EDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRI 698

Query: 591 VKKLTICGDCHSLMKYASKISQREIVL 617
           +K L IC DCH+  K  SK   R+IV 
Sbjct: 699 MKNLRICNDCHTAAKLISKAFCRKIVF 725



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 190/392 (48%), Gaps = 63/392 (16%)

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
           +A+SR+         +H  IDY   IF+     N  ++N++IR     ++ Q+   HF F
Sbjct: 11  YAASRLIKFSTHFPFIH--IDYTRRIFNFIENTNCFMWNMMIR-----AYIQTNSPHFAF 63

Query: 120 MLRLSVRPNRL-----TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
            L  S+  N L     TYP + ++ +        + +H  ++K G + D +VR  L + +
Sbjct: 64  TLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCF 123

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
                   A +VF+E+   +       WN ++ G  +IG + +A  ++  MP++++ +  
Sbjct: 124 SVCSNMTDACRVFNESSVLDSVS----WNSILAGYIEIGNVEEAKHIYHQMPERSIIASN 179

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           S+I  F  +G + +A +LF++M EK +V+W+A+I  F QN   E+A+  F  M   GV  
Sbjct: 180 SMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHKIGVMV 239

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT--------ALVDMYAKCGN 346
           ++   VSALSACA +  +  G  +H+        L   IGT        AL+ MY+KCG+
Sbjct: 240 DEVVAVSALSACANLLVVNMGKLIHS--------LSLKIGTESYINLQNALIYMYSKCGD 291

Query: 347 IEAASLVFGET-------------------------------KEKDLLTWTAMIWGLAIH 375
           I  A  +F E                                 EKD+++W++MI G A +
Sbjct: 292 IMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQN 351

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             +++ +  F++M  SG +PD T  +++++AC
Sbjct: 352 DLFDETLALFQEMQMSGFKPDETTLVSVISAC 383



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 102/241 (42%), Gaps = 45/241 (18%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A +IFD    K++  ++ +I G A+N  F   ++ F  M     +P+  T   V  +
Sbjct: 323 VDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISA 382

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A L+ L  G+ +H  I ++G+  +  +   L DMY++ G    A +VF    EK  S  
Sbjct: 383 CARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGIST- 441

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK------------------------------- 227
              WN LI G +  G +  ++++F  M K                               
Sbjct: 442 ---WNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFY 498

Query: 228 ---------KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEA 277
                     NV  +  ++D   R G L++A EL  +MP    V +W A++    ++G++
Sbjct: 499 SMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDS 558

Query: 278 E 278
           E
Sbjct: 559 E 559



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 85/197 (43%), Gaps = 11/197 (5%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHK 77
           S  KP     ET ++S+I +      L Q   +HA I  + L  +  + T LI       
Sbjct: 367 SGFKPD----ETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCG 422

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
            ++ AL +F     K +  +N LI GLA N   +S +  F  M +  V PN +T+  V  
Sbjct: 423 CVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHVTPNEITFMGVLG 482

Query: 138 SVASLSLLSLGR-GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           +   + L+  G+   + +I    ++ +      + D+  + GK + A ++ +  P    +
Sbjct: 483 ACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAEELLNRMP---MT 539

Query: 197 ESVLLWNVLINGCSKIG 213
             V  W  L+  C K G
Sbjct: 540 PDVATWGALLGACKKHG 556


>gi|356560286|ref|XP_003548424.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Glycine max]
          Length = 911

 Score =  311 bits (796), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 207/685 (30%), Positives = 325/685 (47%), Gaps = 82/685 (11%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           T+  I+ L+ +    + L   +QIH  +I     +++ I   ++S  S +  ++ A   F
Sbjct: 231 TDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICNSIVSMYSRNNRLELARVAF 290

Query: 87  DHFTPKNLHIFNVLIRGLAENS-----------------------------------HFQ 111
           D     N   +N +I   A N                                     ++
Sbjct: 291 DSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYE 350

Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
           + +++F  +     +P+  +     ++V  L   +LG+ +H  I++S +EYD +V   L 
Sbjct: 351 NVLTNFRSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLV 410

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----K 227
           D Y++      A  VF  T  KN    +  WN LI+G +  G    A +L   M     K
Sbjct: 411 DKYIKNDCLDKAEVVFHHTKNKN----ICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIK 466

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAM 283
            ++ +W SL+ G+   G  ++A  +  ++   G    VVSWTAMI+G  QN     AL  
Sbjct: 467 PDLVTWNSLVSGYSMSGRSEEALAVINRIKSLGLTPNVVSWTAMISGCCQNENYMDALQF 526

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F QM +  V+ N  T+ + L ACA    L+ G  +H +   + F     I TAL+DMY K
Sbjct: 527 FSQMQEENVKPNSTTICTLLRACAGSSLLKIGEEIHCFSMRHGFLDDIYIATALIDMYGK 586

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G ++ A  VF   KEK L  W  M+ G AI+G  E+    F +M  +G  PD   F A+
Sbjct: 587 GGKLKVAHEVFRNIKEKTLPCWNCMMMGYAIYGHGEEVFTLFDEMRKTGVRPDAITFTAL 646

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------QNS 456
           L+ C  SG V     +FDSM+ DY I P+++H++ +V+LL + G   +         Q +
Sbjct: 647 LSGCKNSGLVMDGWKYFDSMKTDYNINPTIEHYSCMVDLLGKAGFLDEALDFIHAVPQKA 706

Query: 457 QNSF---------------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
             S                        LL+L+P + ++Y L+ NIY+   RW DV R++ 
Sbjct: 707 DASIWGAVLAACRLHKDIKIAEIAARNLLRLEPYNSANYALMMNIYSTFDRWGDVERLKE 766

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
            M    +K    WS+I+V   +H F   G  H    EI+ +L  +++  ++ GY+     
Sbjct: 767 SMTALGVKIPNVWSWIQVKQTIHVFSTEGKSHPEEGEIYFELYQLISEIKKLGYVLDINC 826

Query: 554 VLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           V  NI + EKE+ L  H+EKLA+ +GL++T  G+ I++VK   IC DCH+  KY S    
Sbjct: 827 VHQNIDDSEKEKVLLSHTEKLAMTYGLMKTKGGSPIRVVKNTRICHDCHTTAKYISLARN 886

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
           REI LRD  RFH+F +G CSC+D W
Sbjct: 887 REIFLRDGGRFHHFMNGECSCKDRW 911



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/441 (20%), Positives = 184/441 (41%), Gaps = 45/441 (10%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           ++HA ++         ++  LI+    +  ID A  +FD    +   ++N ++     + 
Sbjct: 152 EVHACLVKRGFHVDVHLSCALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSE 211

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            ++  +  F  M   S +    T   + ++   L  L+ G+ +H  +++ G   +  +  
Sbjct: 212 KWEDALELFRRMQSASAKATDGTIVKLLQACGKLRALNEGKQIHGYVIRFGRVSNTSICN 271

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
            +  MY +  +   A   FD T + N                                  
Sbjct: 272 SIVSMYSRNNRLELARVAFDSTEDHNS--------------------------------- 298

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMF 284
             ASW S+I  +     L  A +L ++M   GV    ++W ++++G    G  E  L  F
Sbjct: 299 --ASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQGSYENVLTNF 356

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
             +  AG + +  ++ SAL A   +G    G  +H YI  +       + T+LVD Y K 
Sbjct: 357 RSLQSAGFKPDSCSITSALQAVIGLGCFNLGKEIHGYIMRSKLEYDVYVCTSLVDKYIKN 416

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
             ++ A +VF  TK K++  W ++I G    G ++ A +   +M   G +PD   + +++
Sbjct: 417 DCLDKAEVVFHHTKNKNICAWNSLISGYTYKGLFDNAEKLLNQMKEEGIKPDLVTWNSLV 476

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464
           +    SG+ + AL   + ++    + P+V   T +++   +    ++ Y ++   F+++ 
Sbjct: 477 SGYSMSGRSEEALAVINRIK-SLGLTPNVVSWTAMISGCCQ----NENYMDALQFFSQMQ 531

Query: 465 QLKPKHPSSYVLLSNIYAAEG 485
           +   K P+S  + + + A  G
Sbjct: 532 EENVK-PNSTTICTLLRACAG 551



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 60/253 (23%), Positives = 118/253 (46%), Gaps = 8/253 (3%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASW 233
           G +     VF E  +K          V++  C  +  L   +E+   + K+    +V   
Sbjct: 110 GDSHEILAVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLS 169

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +LI+ + +   +  A ++F++ P +    W  ++    ++ + E AL +F +M  A  +
Sbjct: 170 CALINLYEKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAK 229

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAAS 351
           A D T+V  L AC K+ AL  G ++H Y+    FG     +I  ++V MY++   +E A 
Sbjct: 230 ATDGTIVKLLQACGKLRALNEGKQIHGYVI--RFGRVSNTSICNSIVSMYSRNNRLELAR 287

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
           + F  T++ +  +W ++I   A++     A    ++M  SG +PD   + ++L+     G
Sbjct: 288 VAFDSTEDHNSASWNSIISSYAVNDCLNGAWDLLQEMESSGVKPDIITWNSLLSGHLLQG 347

Query: 412 QVKLALNFFDSMR 424
             +  L  F S++
Sbjct: 348 SYENVLTNFRSLQ 360



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 93/187 (49%), Gaps = 5/187 (2%)

Query: 225 MPKKN--VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ-NGEAEKAL 281
           MPKK   V    S++  +++ GD + A ++F     +  + W + I  F+   G++ + L
Sbjct: 57  MPKKRNLVTMDGSMMRNYLQFGDFESATKVFFVGFARNYLLWNSFIEEFASFGGDSHEIL 116

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
           A+F ++ D GV+ +   +   L  C  +  L  G+ VH  +    F +   +  AL+++Y
Sbjct: 117 AVFKELHDKGVKFDSKALTVVLKICLALMELWLGMEVHACLVKRGFHVDVHLSCALINLY 176

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVF 400
            K   I+ A+ VF ET  ++   W  ++       ++E A++ F++M   S    DGT+ 
Sbjct: 177 EKYLGIDGANQVFDETPLQEDFLWNTIVMANLRSEKWEDALELFRRMQSASAKATDGTI- 235

Query: 401 LAILTAC 407
           + +L AC
Sbjct: 236 VKLLQAC 242


>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Glycine max]
          Length = 591

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 182/594 (30%), Positives = 302/594 (50%), Gaps = 93/594 (15%)

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           L +P + K     +L +L + +H  ++ +G+ +  +   HL +   +   T  AF +F+ 
Sbjct: 4   LNHPILQKLQKCHNLNTL-KQVHAQMLTTGLSFQTYYLSHLLNTSSKFASTY-AFTIFNH 61

Query: 190 TPEKNKSESVLLWNVLIN-------------------------------------GCSKI 212
            P    + ++ L+N LI+                                      C+  
Sbjct: 62  IP----NPTLFLYNTLISSLTHHSDQIHLAFSLYNHILTHKTLQPNSFTFPSLFKACASH 117

Query: 213 GYLRKAVELFG-----MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
            +L+    L       + P  +     SL++ + + G L  +  LF+Q+ E  + +W  M
Sbjct: 118 PWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLATWNTM 177

Query: 268 INGFSQNGE-------------AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           +  ++Q+               + +AL +F  M  + ++ N+ T+V+ +SAC+ +GAL  
Sbjct: 178 LAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQ 237

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G   H Y+  N+  L   +GTALVDMY+KCG +  A  +F E  ++D   + AMI G A+
Sbjct: 238 GAWAHGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAV 297

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           HG   QA++ ++ M      PDG   +  + AC + G V+  L  F+SM+  + +EP ++
Sbjct: 298 HGHGNQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFESMKGVHGMEPKLE 357

Query: 435 HHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQL 466
           H+  +++LL R G+  +  +  Q+                            +   L++L
Sbjct: 358 HYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHLIEL 417

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
           +P+   +YVLLSN+YA+ GRW DV RVR LM+   + K PG+S +E+NG +H F  G   
Sbjct: 418 EPETSGNYVLLSNMYASIGRWNDVKRVRMLMKDHGVDKLPGFSLVEINGAMHEFLTGDKA 477

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTT 583
           H  +KEI+SK+ +I     E G+ P T  VL +++EE KE+ L  HSE+LA+AF LI ++
Sbjct: 478 HPFSKEIYSKIGEINRRLLEYGHKPRTSEVLFDVEEEDKEDFLSYHSERLAIAFALIASS 537

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
               I+I+K L +CGDCH++ K  S   QR+I++RD  RFH+FKDG+CSC DYW
Sbjct: 538 SSMPIRIIKNLRVCGDCHAITKLISAAYQRDIIVRDRNRFHHFKDGSCSCLDYW 591



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 94/433 (21%), Positives = 178/433 (41%), Gaps = 78/433 (18%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I+  +   ++   L+Q+HAQ++   L   +   + L++++S   S  YA +IF+H     
Sbjct: 8   ILQKLQKCHNLNTLKQVHAQMLTTGLSFQTYYLSHLLNTSSKFAST-YAFTIFNHIPNPT 66

Query: 94  LHIFNVLIRGLAENS---HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
           L ++N LI  L  +S   H    + + +   + +++PN  T+P + K+ AS   L  G  
Sbjct: 67  LFLYNTLISSLTHHSDQIHLAFSLYNHILTHK-TLQPNSFTFPSLFKACASHPWLQHGPP 125

Query: 151 LHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV----- 204
           LH  ++K     YD FV+  L + Y + GK   +  +FD+  E + +     WN      
Sbjct: 126 LHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQISEPDLAT----WNTMLAAY 181

Query: 205 -------------------------------------------LINGCSKIGYLRKAVEL 221
                                                      LI+ CS +G L +    
Sbjct: 182 AQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNEVTLVALISACSNLGALSQGAWA 241

Query: 222 FGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
            G + + N+        +L+D + + G L  A +LF+++ ++    + AMI GF+ +G  
Sbjct: 242 HGYVLRNNLKLNRFVGTALVDMYSKCGCLNLACQLFDELSDRDTFCYNAMIGGFAVHGHG 301

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-- 335
            +AL ++  M    +  +  T+V  + AC+  G +E G+ +          +KG  G   
Sbjct: 302 NQALELYRNMKLEDLVPDGATIVVTMFACSHGGLVEEGLEIFE-------SMKGVHGMEP 354

Query: 336 ------ALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
                  L+D+  + G ++ A     +   K + + W +++    +HG  E      K +
Sbjct: 355 KLEHYGCLIDLLGRAGRLKEAEERLQDMPMKPNAILWRSLLGAAKLHGNLEMGEAALKHL 414

Query: 389 MYSGTEPDGTVFL 401
           +    E  G   L
Sbjct: 415 IELEPETSGNYVL 427


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 203/684 (29%), Positives = 339/684 (49%), Gaps = 100/684 (14%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++ +  +     +IH   +         +   LI     + ++  A  +FD    +++ 
Sbjct: 158 SVLKACRNVTDGNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMG 217

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS-------LG 148
            +N +I G  ++ + +  ++     L   +R           SV  +SLLS         
Sbjct: 218 SWNAMISGYCQSGNAKEALT-----LSDGLR--------AMDSVTVVSLLSACTEAGDFN 264

Query: 149 RG--LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           RG  +H   +K G+E + FV   L D+Y + G  +   KVFD    ++    ++ WN +I
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRD----LISWNSII 320

Query: 207 NG-------------------------C----------SKIGYLRKAVELFGMMPKK--- 228
                                      C          S++G +R    + G   +K   
Sbjct: 321 KAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWF 380

Query: 229 --NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
             ++    +++  + + G +  A  +F  +P K V+SW  +I+G++QNG A +A+ M+  
Sbjct: 381 LEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNI 440

Query: 287 MLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
           M + G  + AN  T VS L AC++ GAL  G+++H  +  N   L   +GT+L DMY KC
Sbjct: 441 MEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKC 500

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G ++ A  +F +    + + W  +I     HG  E+A+  FK+M+  G +PD   F+ +L
Sbjct: 501 GRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLL 560

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNS 456
           +AC +SG V      F+ M+ DY I PS+KH+  +V+L  R GQ         S   Q  
Sbjct: 561 SACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPD 620

Query: 457 QNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
            + +  LL                    +++P+H   +VLLSN+YA+ G+W+ V  +R++
Sbjct: 621 ASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSI 680

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
              + ++K PGWS +EV+  V  F  G   H + +E++ +L  +    +  GY+P   +V
Sbjct: 681 TSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFV 740

Query: 555 LHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
           L ++++ EKE  L  HSE+LA+AF LI T   TTI+I K L +CGDCHS+ K+ SKI++R
Sbjct: 741 LQDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITER 800

Query: 614 EIVLRDT-RFHYFKDGTCSCRDYW 636
           EI++RD+ RFH+FK+G CSC DYW
Sbjct: 801 EIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 108/475 (22%), Positives = 216/475 (45%), Gaps = 53/475 (11%)

Query: 3   GHVFNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFAS 62
           G V    + +     +   +   S  I + H  +L     + +  + +HA++++ N   +
Sbjct: 28  GAVVREFSASANALQDCWKNGNESKEIDDVH--TLFRYCTNLQSAKCLHARLVVSNAIQN 85

Query: 63  SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF-VFML 121
             I+ +L++      ++  A   FDH   ++++ +N++I G     +    I  F +FML
Sbjct: 86  VCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFML 145

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
              ++P+  T+P V K+  +++    G  +HCL +K G  +D +V   L  +Y + G   
Sbjct: 146 SSGLQPDYRTFPSVLKACRNVTD---GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVV 202

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL---FGMMPKKNVASWVS--- 235
            A  +FDE P ++       WN +I+G  + G  ++A+ L      M    V S +S   
Sbjct: 203 NARILFDEMPTRDMGS----WNAMISGYCQSGNAKEALTLSDGLRAMDSVTVVSLLSACT 258

Query: 236 -----------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                        LID +   G LK   ++F++M  + ++SW +
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNS 318

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           +I  +  N +  +A+ +F +M  + ++ +  T++S  S  +++G + A   V  +     
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 327 FGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           + L+   IG A+V MYAK G +++A  VF     KD+++W  +I G A +G   +AI+ +
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMY 438

Query: 386 KKMMYSGTE--PDGTVFLAILTACWYSGQVKLALNFF-----DSMRFDYFIEPSV 433
             M   G E   +   ++++L AC  +G ++  +        + +  D F+  S+
Sbjct: 439 NIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSL 493


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  310 bits (795), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 208/678 (30%), Positives = 310/678 (45%), Gaps = 107/678 (15%)

Query: 31  ETHII-SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           + H++ S + S  +    R +HA  ++  L     + + L+ S     +   A S+FD  
Sbjct: 19  DPHLLPSALKSCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRM 78

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT------------------ 131
             KN+  ++ LI G +     ++       M    V PN +T                  
Sbjct: 79  PEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAV 138

Query: 132 -----------YPFVSKSVASLSLL------SLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
                      +P  +    +LS +      S+G+ +H  +VK+G   DA V   L DMY
Sbjct: 139 TALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALIDMY 198

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234
            + G+     +VF E+   +                                   VAS  
Sbjct: 199 GKCGRADEIVRVFHESSHMD-----------------------------------VASCN 223

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDA 290
           +L+ G  R   + +A  LF +   +GV    VSWT+++    QNG   +A+ +F  M   
Sbjct: 224 ALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSI 283

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           GV  N  T+   L A A V AL  G   H +     F     +G+ALVDMYAKCG    A
Sbjct: 284 GVEPNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHA 343

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F     +++++W AMI G A+HG    A+Q F  M     +PD   F  +L AC  +
Sbjct: 344 RTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQA 403

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--------------- 455
           G  +    +F+ M+  + I P ++H+  +V LL R G+  + Y                 
Sbjct: 404 GLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGS 463

Query: 456 -------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                        ++ +  KL QL+P +  +YVLLSNIYA++  W  V RVR  M+   +
Sbjct: 464 LLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGL 523

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+ G S+IE+   VH   AG   H +   I  KL  +       G+ P  ++VLH+++E
Sbjct: 524 KKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEE 583

Query: 561 -EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
            EK+  L  HSEKLA+A GLI T PGT ++++K L ICGDCH  MK+ S   QREI +RD
Sbjct: 584 QEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRD 643

Query: 620 T-RFHYFKDGTCSCRDYW 636
           T RFH+FKDG CSC DYW
Sbjct: 644 TNRFHHFKDGKCSCGDYW 661


>gi|359495686|ref|XP_003635058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Vitis vinifera]
          Length = 540

 Score =  310 bits (794), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 171/468 (36%), Positives = 265/468 (56%), Gaps = 36/468 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR----KGDLKKAGELFEQMPEKG 260
           ++N C K+  L +  EL   + K  +     L++G ++     G +  A  +F++MPE  
Sbjct: 73  VLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPD 132

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
             SW+ M++G+SQNG+A + L +  +M    V ++ FT+ S +  C  +G L+ G  VH+
Sbjct: 133 SASWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHS 192

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI      +   +GTALV MY+KCG+++ A  VF    E+D+ TW+ MI G AIHG  E+
Sbjct: 193 YIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIHGHDEK 252

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+Q F  M  S   P+   F ++L+A  +SG V+     F++M  +Y I P +KH+  +V
Sbjct: 253 ALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 312

Query: 441 NLLSRVGQ---------------------------DSQGYQN-SQNSFTKLLQLKPKHPS 472
           +L  R G                             + GY+   ++   K+L+L P  P 
Sbjct: 313 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKLDPSSPE 372

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           +YV +SN+YA+ GRW  V +VR+LM+ ++ KK  GWS IE+N  VH+F  G   H   ++
Sbjct: 373 NYVFVSNVYASLGRWSSVCQVRSLMKEKAPKKQHGWSSIEINFMVHKFIMGEESHPKREK 432

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           I+  L  +    ++ G++  T  VLH+I +EEKE ALG HSE+LA+A+GL+ T  G+ I+
Sbjct: 433 IYGMLHQMARKLKQVGHVASTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGSPIR 492

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L  C DCH ++K  S++  REI+LRD   FH+F++  CSC DYW
Sbjct: 493 IVKNLRACRDCHEVIKLISEVYNREIILRDRVCFHHFRERGCSCNDYW 540



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 166/376 (44%), Gaps = 48/376 (12%)

Query: 74  SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
           S H  + YA  IF      NL ++N +IRG + +    S I+ +  M    + PN  T+ 
Sbjct: 12  SPHGHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFG 71

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           FV  +   L  L  G+ LH  IVK+G++++  +   L  +Y   G    A  +FDE PE 
Sbjct: 72  FVLNACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEP 131

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS--------------------- 232
           + +     W+ +++G S+ G   + ++L   M  +NV+S                     
Sbjct: 132 DSAS----WSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG 187

Query: 233 -WV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
            WV                 +L+  + + G L  A ++F+ M E+ V +W+ MI G++ +
Sbjct: 188 KWVHSYIDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTTWSIMIAGYAIH 247

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  EKAL +F  M  + +  N  T  S LSA +  G +E G ++   +   ++ +   I 
Sbjct: 248 GHDEKALQLFDAMKRSKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETMW-TEYKITPQIK 306

Query: 335 --TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-Y 390
               +VD++ + G +  A   +     E +++ W  ++     HG         +K++  
Sbjct: 307 HYGCMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKGLGEHISRKILKL 366

Query: 391 SGTEPDGTVFLAILTA 406
             + P+  VF++ + A
Sbjct: 367 DPSSPENYVFVSNVYA 382



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 8/213 (3%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +++H+QI+   L   + +   LI   +    +DYA  +FD     +   ++ ++ G ++N
Sbjct: 87  QELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSASWSTMVSGYSQN 146

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +     M   +V  +  T   V      L +L LG+ +H  I K GV+ D  + 
Sbjct: 147 GQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLGKWVHSYIDKEGVKIDVVLG 206

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G    A KVF    E++    V  W+++I G +  G+  KA++LF  M +
Sbjct: 207 TALVGMYSKCGSLDNALKVFQGMAERD----VTTWSIMIAGYAIHGHDEKALQLFDAMKR 262

Query: 228 ----KNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                N  ++ S++  +   G ++K  ++FE M
Sbjct: 263 SKIIPNCVTFTSVLSAYSHSGLVEKGHQIFETM 295



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 78/173 (45%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +  A  +F       +  W  +I G+S +     A+A++  M   G+  N +T    L
Sbjct: 15  GHVAYAHCIFSCTHHPNLFMWNTIIRGYSISDSPISAIALYKDMFLCGISPNSYTFGFVL 74

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           +AC K+  L  G  +H+ I       +  +   L+ +YA CG ++ A ++F E  E D  
Sbjct: 75  NACCKLLRLCEGQELHSQIVKAGLDFETPLLNGLIKLYAACGCMDYACVMFDEMPEPDSA 134

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           +W+ M+ G + +G+  + ++  ++M       D     +++  C   G + L 
Sbjct: 135 SWSTMVSGYSQNGQAVETLKLLREMQAENVSSDAFTLASVVGVCGDLGVLDLG 187


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 198/673 (29%), Positives = 326/673 (48%), Gaps = 111/673 (16%)

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL--SVRPN 128
           SS+ + + +  A  +FD    ++L  +  +I G A        +  F  ML    +  PN
Sbjct: 66  SSSVIARGLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPN 125

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY-------------- 174
                 V +  A L  +  GR +H  I++SGV  D  +   + DMY              
Sbjct: 126 AFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFG 185

Query: 175 -----------------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
                            +Q G   GA ++FDE+  ++ S     WN +++G  + G+  +
Sbjct: 186 AMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSS----WNTIVSGLMRHGHTTE 241

Query: 218 AV----------------------ELFGMMPKKNVASWV-----------------SLID 238
           A+                       L G++  +++   +                 SL+D
Sbjct: 242 ALGRLQQMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMD 301

Query: 239 GFMRKGDLKKAGELFEQ---MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
            + + G+++ A  +F++     E    +W+ M+ G+ QNG  E+AL  F +ML  GV A 
Sbjct: 302 MYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAG 361

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            F + S  SACA  G +E G +VH ++          + +A+VDMY+K G++E A  +F 
Sbjct: 362 QFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFR 421

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
             + K++  WT M+   A HG+   A++ F +M      P+    +A+L+AC +SG V  
Sbjct: 422 SAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSD 481

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------- 452
             ++F+ M+ +Y I P+ +H+  +V+L  R G   +                        
Sbjct: 482 GYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSAC 541

Query: 453 -----YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                 + +Q +  KL+QL+     SYVL+SN+YA   +W D  ++R+ M+ R ++K PG
Sbjct: 542 RLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPG 601

Query: 508 WSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE- 564
            S+I +   VHRF A    H  + EI++ LE +M   +E GY   T+ V+H+I+EE+ E 
Sbjct: 602 QSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRET 661

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFH 623
           +L  HSEKLA+AFG+I T  GT ++I K L +C DCH  +K+ ++ + REIV+RD  RFH
Sbjct: 662 SLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAIKFITRATDREIVVRDLYRFH 721

Query: 624 YFKDGTCSCRDYW 636
           +FKDG CSC D+W
Sbjct: 722 HFKDGQCSCEDFW 734



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/266 (23%), Positives = 117/266 (43%), Gaps = 16/266 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +N T + + +L    +S    RQ+H ++++  L   + +   L+        ++ ALSIF
Sbjct: 257 SNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIF 316

Query: 87  DH---FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           D    FT      ++ ++ G  +N   +  +  F  MLR  V   +     V+ + A+  
Sbjct: 317 DRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAG 376

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           ++  GR +H  + K G  +DA +   + DMY + G    A ++F     KN    V LW 
Sbjct: 377 MVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKN----VALWT 432

Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            ++   +  G  R A+E+F  M  +    N  + V+++      G +      F  M E+
Sbjct: 433 TMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEE 492

Query: 260 -GVVS----WTAMINGFSQNGEAEKA 280
            G+V     +  M++ + + G  +KA
Sbjct: 493 YGIVPNTEHYNCMVDLYGRAGLLDKA 518


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 203/681 (29%), Positives = 338/681 (49%), Gaps = 83/681 (12%)

Query: 34  IISLIHSSNSTKQLR---QIHAQIILHNLFASSRI--TTQLISSASLHKSIDYALSIFDH 88
           +I L+  S  TK L+    IH+ +I+ +    + I     LI+  +    +  A ++FD 
Sbjct: 32  LIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDR 91

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSL 147
              +N+  ++ L+ G   N      I     M+   +V PN         S      +  
Sbjct: 92  MPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEE 151

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR  H L++K+G  +  +VR  L  MY +    + A  V++E P  +    ++ +N +++
Sbjct: 152 GRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVND----IVAYNSILS 207

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASW--VSLIDGFMRKGDLK------------------ 247
              + GYLR+ +E+   M  ++V  W  V+ ++ F     LK                  
Sbjct: 208 SLVENGYLREGLEVLRSMVSESV-KWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVE 266

Query: 248 --------------KAGE------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
                         K G+      +F+ +  + VV WTA++    QNG  E+AL +F +M
Sbjct: 267 CDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKM 326

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
               V++N+FT    L+ACA + A   G  +H +   + F     +G AL++MYAK G+I
Sbjct: 327 EQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDI 386

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           EAA  VF +   +D++TW AMI G + HG  ++A+  F+ M+ +   P+   F  +L+AC
Sbjct: 387 EAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSAC 446

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK----- 462
            + G V+    +   +   + ++P ++H+T +V+LLS+ GQ ++     + +  K     
Sbjct: 447 GHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVA 506

Query: 463 -----------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                                  +L++ P    +Y LLSNIYA E RW  V +VR LM+ 
Sbjct: 507 WRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRD 566

Query: 500 RSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           + IKK+PG S+IE+    H F  E   H    + + K+++++A  +  GY P    VLH+
Sbjct: 567 KKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHD 626

Query: 558 IKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           +++E KE  L  HSEKLA+A+GL++     +I ++K L IC DCHS ++  SK++ R IV
Sbjct: 627 VEDEQKEYYLSYHSEKLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIV 686

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+F+DG CSC DYW
Sbjct: 687 VRDANRFHHFRDGRCSCLDYW 707


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  310 bits (794), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/587 (32%), Positives = 291/587 (49%), Gaps = 72/587 (12%)

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLL 145
           D     N+  +N L+ GL  +   +  +     M    + RP+         +V  + L+
Sbjct: 114 DGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLV 173

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S+G+ LH   VK+G   DA V   L DMY + G+     +VFDE+   +           
Sbjct: 174 SVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMD----------- 222

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV---- 261
                                   VAS  +LI G  R   + +A  LF++  ++GV    
Sbjct: 223 ------------------------VASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNV 258

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSWT+++    QNG+  +A+  F +M   G   N  T+   L A A V AL  G   H +
Sbjct: 259 VSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCF 318

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
                F     + +ALVDMYAKCG ++ A ++F     +++++W AMI G A++G    A
Sbjct: 319 ALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNA 378

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F  M+    +PD   F  +L AC  +G  +   ++F  M  +Y + P ++H+  +V 
Sbjct: 379 VWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVT 438

Query: 442 LLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSS 473
           LL R G+  + Y                              ++ +  KL  L+P++  +
Sbjct: 439 LLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGN 498

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEI 531
           YVLLSNIYA++  W  V RVR +M+   +KK+ G S+IE+   VH   AG   H +   I
Sbjct: 499 YVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAI 558

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
             K+  +    R+ G++P T++VLH+++E EK++ L  HSEKLA+A GLI T+PGTT+++
Sbjct: 559 IEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRV 618

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +K L ICGDCH  MK+ S    REI +RDT RFH+F  G CSC D+W
Sbjct: 619 IKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 165/390 (42%), Gaps = 46/390 (11%)

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
           F+  +S  P+    P   KS  +L L    R LH +   SG+  D FV   L   Y++LG
Sbjct: 10  FLRHVSFPPDPHLLPTAFKSCPTLPL---ARALHAVAEVSGLARDPFVASSLLHAYLRLG 66

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLID 238
            T  A  +FD  P                                  P++ V  W +L+ 
Sbjct: 67  TTGNARALFDGMPR---------------------------------PQRTVVGWSALVA 93

Query: 239 GFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
               +GD + A  L E+M   G     V++W  +++G +++G A  A+     M   G+ 
Sbjct: 94  AHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLL 153

Query: 294 ANDFTVVS-ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             D T VS ALSA   VG +  G ++H Y           + TAL+DMY KCG       
Sbjct: 154 RPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVR 213

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF E+   D+ +  A+I GL+ + +  +A++ FK+ +  G E +   + +I+  C  +G+
Sbjct: 214 VFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGK 273

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472
              A+ FF  M+     EP+      V+   + V     G      +  K   L   + S
Sbjct: 274 DLEAVEFFREMQAQG-TEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGF-LHDVYVS 331

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
           S   L ++YA  GR KD   +   M  R++
Sbjct: 332 SA--LVDMYAKCGRVKDARIIFDTMVSRNV 359


>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Glycine max]
          Length = 529

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 175/516 (33%), Positives = 281/516 (54%), Gaps = 35/516 (6%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +  Q IS+ S    I+ A S F +    N+ +FN LIRG     + +  + H++ MLR +
Sbjct: 12  LVNQFISACSNLSCINLAASAFANVQNPNVLVFNALIRGCVHCCYSEQALVHYMHMLRNN 71

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           V P   ++  + K+   L   + G  +H  + K G +   FV+  L + Y   G   G+ 
Sbjct: 72  VMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSR 131

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           +VFD+ PE++    V  W  +I+   + G +  A  LF  MP+KNVA+W ++IDG+ + G
Sbjct: 132 RVFDDMPERD----VFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLG 187

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           + + A  LF QMP + ++SWT M+N +S+N   ++ +A+F  ++D G+  ++ T+ + +S
Sbjct: 188 NAESAEFLFNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVIDKGMIPDEVTMTTVIS 247

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA +GAL  G  VH Y+    F L   IG++L+DMYAKCG+I+ A LVF + + K+L  
Sbjct: 248 ACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVFYKLQTKNLFC 307

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W  +I GLA HG  E+A++ F +M      P+   F++ILTAC ++G ++    +F SM 
Sbjct: 308 WNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMV 367

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG--QDS----QGYQNSQNSFT----------------- 461
            DY I P V+H+  +V+LLS+ G  +D+    +      NSF                  
Sbjct: 368 QDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNSFIWGALLNGCKLHKNLEIA 427

Query: 462 -----KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI-KKDPGWSYIEVNG 515
                 L+ L+P +   Y LL N+YA E RW +VA++RT M+   + K+ PG S++E+N 
Sbjct: 428 HIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKDLGVEKRCPGSSWVEINK 487

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMP 549
            VH F A    H    ++H  L ++    R  GY+P
Sbjct: 488 TVHLFAASDTYHPSYSQLHLLLAELDDQLRLAGYVP 523



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 15/243 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T T +IS      +    +++H  ++L        I + LI   +   SID AL +F
Sbjct: 238 DEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVF 297

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                KNL  +N +I GLA + + +  +  F  M R  +RPN +T+  +  +      + 
Sbjct: 298 YKLQTKNLFCWNCIIDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIE 357

Query: 147 LGRGLHCLIVKSGVEYDAFVRVH----LADMYVQLGKTRGAFKVF-DETPEKNKSESVLL 201
            GR     +V+   +Y    +V     + D+  + G    A ++  + T E N      +
Sbjct: 358 EGRRWFMSMVQ---DYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEPNS----FI 410

Query: 202 WNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           W  L+NGC     +     AV+   ++   N   +  L++ +  +    +  ++   M +
Sbjct: 411 WGALLNGCKLHKNLEIAHIAVQNLMVLEPSNSGHYSLLVNMYAEENRWNEVAKIRTTMKD 470

Query: 259 KGV 261
            GV
Sbjct: 471 LGV 473


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 200/625 (32%), Positives = 306/625 (48%), Gaps = 77/625 (12%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASL 142
           IF     KN+  +N ++ G +              ML  S  V+ + +T           
Sbjct: 333 IFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDE 392

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           S+L   + LHC  +K    YD  +       Y + G    A +VF       +S+++  W
Sbjct: 393 SVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGI----RSKTLNSW 448

Query: 203 NVLING-----------------------------------CSKIGYLRKAVELFGMMPK 227
           N LI G                                   CSK+  LR   E+ G + +
Sbjct: 449 NALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIR 508

Query: 228 ----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM 283
               +++  ++S++  ++  G+L     LF+ M +  +VSW  +I G  QNG  E+AL +
Sbjct: 509 NWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGL 568

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F QM+  G++    ++++   AC+ + +L  G   H Y   +       I  +++DMYAK
Sbjct: 569 FRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAK 628

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G I  +S VF   KEK   +W AMI G  +HGR ++AI+ F++M  +G  PD   FL +
Sbjct: 629 NGAITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGV 688

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS------------- 450
           LTAC +SG +   L + D M+  + ++P++KH+  V+++L R GQ               
Sbjct: 689 LTACNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEP 748

Query: 451 ---------------QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                          Q  +  +    KL  L+P+ P +YVLLSN+YA  G+W DV +VR 
Sbjct: 749 DVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQ 808

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA--KEIHSKLEDIMAGAREQGYMPGTEW 553
            M+  S++KD G S+IE+NG V  F  G   L   +EI S    +     + GY P T  
Sbjct: 809 RMKEMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSS 868

Query: 554 VLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           V H++ +EEK E L  HSEKLA+ +GLI+T+ GTT+++ K L IC DCH+  K  SK+ +
Sbjct: 869 VQHDLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVME 928

Query: 613 REIVLRDT-RFHYFKDGTCSCRDYW 636
           REIV+RD  RFH+F  G CSC DYW
Sbjct: 929 REIVVRDNKRFHHFNKGFCSCGDYW 953



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 110/410 (26%), Positives = 185/410 (45%), Gaps = 48/410 (11%)

Query: 37  LIHSSNSTKQL---RQIHAQIILHNLFASSRI------TTQLISSASLHKSIDYALSIFD 87
           L+ +S   K +   R+IH     H +  S+R+       T++I+  ++  S D + S FD
Sbjct: 90  LLQASGKRKDIEMGRKIH-----HLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFD 144

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLS 146
               KNL  +N +I   + N  +   +  F+ M+ +  + P+  T+P V K+ A +S + 
Sbjct: 145 ALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVG 204

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           +G  +H L+VK+G+  D FV   L   Y   G    A K+FD  PE+N    ++ WN +I
Sbjct: 205 IGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERN----LVSWNSMI 260

Query: 207 NGCSKIG----YLRKAVELFGMMP----------KKNVASWV-------------SLIDG 239
              S  G    ++     +  ++P           K V  W              +L+D 
Sbjct: 261 RVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDM 320

Query: 240 FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDF 297
           + + G +  +  +F+    K VVSW  M+ GFS  G+      +  QML     V+A++ 
Sbjct: 321 YSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEV 380

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+++A+  C     L +   +H Y    +F     +  A V  YAKCG++  A  VF   
Sbjct: 381 TILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGI 440

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + K L +W A+I G A       ++    +M  SG  PD     ++L+AC
Sbjct: 441 RSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSAC 490



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/444 (22%), Positives = 195/444 (43%), Gaps = 53/444 (11%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRI 65
           F+ L   +A + ++K+     + +T  + + +    +    L+++H   +         +
Sbjct: 362 FDLLRQMLAGSEDVKA-----DEVTILNAVPVCFDESVLPSLKELHCYSLKQEFVYDELL 416

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125
               ++S +   S+ YA  +F     K L+ +N LI G A++S  +  +   + M    +
Sbjct: 417 ANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGL 476

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185
            P+  T   +  + + L  L LG+ +H  I+++ +E D FV + +  +Y+  G+      
Sbjct: 477 LPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQV 536

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP------------- 226
           +FD   +     S++ WN +I G  + G+  +A+ LF      G+ P             
Sbjct: 537 LFDAMEDN----SLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACS 592

Query: 227 --------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                               + N     S+ID + + G + ++ ++F  + EK   SW A
Sbjct: 593 LLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNA 652

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G+  +G A++A+ +F +M   G   +D T +  L+AC   G L  G+R  + +  + 
Sbjct: 653 MIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMK-SS 711

Query: 327 FGLKGAIG--TALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
           FGLK  +     ++DM  + G ++ A  V  E ++E D+  W +++    IH   E   +
Sbjct: 712 FGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEK 771

Query: 384 YFKKMMYSGTE-PDGTVFLAILTA 406
              K+     E P+  V L+ L A
Sbjct: 772 VAAKLFVLEPEKPENYVLLSNLYA 795


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 256/436 (58%), Gaps = 36/436 (8%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L++ +     L  A  LF+++P+  +  W  +I G++ NG  E A+ +++QM D G+  +
Sbjct: 116 LVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPD 175

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           +FT    L ACA + A+E G  +H ++    +     +G AL+DMYAKCG + +A  VF 
Sbjct: 176 NFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFD 235

Query: 356 ETKEKD---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           +   +D   +++W AMI G A+HG   +A+  F++M     +PD   F+ +L+AC + G 
Sbjct: 236 KILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGL 294

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------------------ 454
           ++    FF++M  DY I+P+V+H+T +V+LL   G+  + Y                   
Sbjct: 295 LEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALL 354

Query: 455 NS----------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
           NS          + +  +L++L+P    +YV+LSNIYA  G+W+ VA++R LM  R +KK
Sbjct: 355 NSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKK 414

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEK 562
               S+IEV   VH F +G   H L+ EI+S+LE +    +E GY P T  V H++++++
Sbjct: 415 SIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDE 474

Query: 563 EEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           +  + C HSE+LA+AFGLI T PGT + I K L IC DCH  +K+ SKI++REI +RD  
Sbjct: 475 KANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVN 534

Query: 621 RFHYFKDGTCSCRDYW 636
           R+H+FKDG CSC DYW
Sbjct: 535 RYHHFKDGVCSCGDYW 550



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 152/303 (50%), Gaps = 17/303 (5%)

Query: 6   FNRLTTAIAPTTNIKSSHKPSNNITETH--IISLIHSSNSTKQLR---QIHAQIILHNLF 60
           F+   T +    +  + H  S  +T T+    SL+ S  + K ++   Q+HAQ+ L    
Sbjct: 48  FDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFG 107

Query: 61  ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
             + I T+L++   +  S+  A  +FD     N+ ++NVLIRG A N  +++ +  +  M
Sbjct: 108 FDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQM 167

Query: 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
               + P+  T+PFV K+ A+LS +  GR +H  +V++G E D FV   L DMY + G  
Sbjct: 168 FDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCV 227

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---PKKNVASWVSLI 237
             A +VFD+   ++ +  V+ WN +I G +  G+  +A++LF  M    K +  ++V ++
Sbjct: 228 GSAREVFDKILVRD-AVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVL 286

Query: 238 DGFMRKGDLKKAGELFEQM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQM---LD 289
                 G L++    FE M      +  V  +T M++    +G  ++A  +  QM    D
Sbjct: 287 SACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPD 346

Query: 290 AGV 292
           +GV
Sbjct: 347 SGV 349



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 55/107 (51%)

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L +C    A++ G ++H  +    FG    I T LV++Y  C ++ +A L+F    + 
Sbjct: 80  SLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKH 139

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++  W  +I G A +G YE A+Q + +M   G  PD   F  +L AC
Sbjct: 140 NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKAC 186


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 189/661 (28%), Positives = 325/661 (49%), Gaps = 105/661 (15%)

Query: 81  YALSIFDHF-TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           YAL++F    +P    +FN  +R L+ +S  ++ I  +  +  +  R ++ ++  + K+V
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR------------------ 181
           + +S L  G  LH +  K     D FV     DMY   G+                    
Sbjct: 122 SKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWN 181

Query: 182 -------------GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR------------ 216
                         AFK+F+E  + N     ++   +++ C + G +R            
Sbjct: 182 TMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEN 241

Query: 217 -----------------------KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
                                   A E F  M  +N+    +++ G+ + G L  A  +F
Sbjct: 242 DVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIF 301

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           +Q  +K +V WT MI+ + ++   ++AL +F +M  +G++ +  ++ S +SACA +G L+
Sbjct: 302 DQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILD 361

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
               VH+ I  N    + +I  AL++MYAKCG ++A   VF +   +++++W++MI  L+
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
           +HG    A+  F +M     EP+   F+ +L  C +SG V+     F SM  +Y I P +
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 434 KHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQ 465
           +H+  +V+L  R     +  +  ++                            +  ++L+
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG- 524
           L+P H  + VL+SNIYA E RW+DV  +R +M+ +++ K+ G S I+ NG  H F  G  
Sbjct: 542 LEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDK 601

Query: 525 -HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLI-- 580
            HK + EI++KL+++++  +  GY+P    VL +++EE+++ L   HSEKLAL FGL+  
Sbjct: 602 RHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNE 661

Query: 581 ----QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
               +      I+IVK L +C DCH   K  SK+ +REI++RD TRFH +K+G CSCRDY
Sbjct: 662 EKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDY 721

Query: 636 W 636
           W
Sbjct: 722 W 722



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/293 (23%), Positives = 135/293 (46%), Gaps = 20/293 (6%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           T ++++   +      R+   ++ + NLF    ++T ++S  S    +D A  IFD    
Sbjct: 251 TALVTMYAGAGCMDMAREFFRKMSVRNLF----VSTAMVSGYSKCGRLDDAQVIFDQTEK 306

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K+L  +  +I    E+ + Q  +  F  M    ++P+ ++   V  + A+L +L   + +
Sbjct: 307 KDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWV 366

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  I  +G+E +  +   L +MY + G       VF++ P +N    V+ W+ +IN  S 
Sbjct: 367 HSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRN----VVSWSSMINALSM 422

Query: 212 IGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS---- 263
            G    A+ LF  M ++NV     ++V ++ G    G +++  ++F  M ++  ++    
Sbjct: 423 HGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLE 482

Query: 264 -WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
            +  M++ F +     +AL +   M    V +N     S +SAC   G LE G
Sbjct: 483 HYGCMVDLFGRANLLREALEVIESM---PVASNVVIWGSLMSACRIHGELELG 532


>gi|358347383|ref|XP_003637737.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503672|gb|AES84875.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 561

 Score =  309 bits (792), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 185/563 (32%), Positives = 295/563 (52%), Gaps = 44/563 (7%)

Query: 114 ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM 173
           ++ F  +  L  +P+  +     ++V  L    LG+ +H  I++S + YD +V   L DM
Sbjct: 3   LTSFRSLHSLGFKPDSCSVTSALQAVIELGFFKLGKEIHGYIMRSNLNYDVYVCTSLVDM 62

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----N 229
           YV+      A  V      KN    V  WN LI+G S  G   +AV+L   M ++    +
Sbjct: 63  YVKNDCLEKAQAVLHRAKNKN----VCAWNSLISGYSFKGQFGEAVKLLNQMVEEGITPD 118

Query: 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFF 285
           + +W  L+ G+  +G + +A  +  ++   G    VVSWTA+I+G SQN +   AL +F 
Sbjct: 119 LVTWNGLVSGYSMQGRIDEALTIINRIKSSGITPNVVSWTALISGCSQNEKYMDALKIFS 178

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           QM    V+ N  T+ S L ACA    L+ G  +H +     F     + TAL+DMY++ G
Sbjct: 179 QMQAENVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAG 238

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            ++ A  VF + +EK L  W  M+ G AIH   E+ +  + KM      PD   F A+L+
Sbjct: 239 KLKVAYNVFNKIQEKTLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLS 298

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------------------ 447
           AC  SG V     +FDSM+ DY I P+++H+  +V+LL + G                  
Sbjct: 299 ACKNSGLVDEGWKYFDSMQEDYNIVPTIEHYCCMVDLLGKSGFLDEASHFIETMPIKPDA 358

Query: 448 ----------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                     +  +  + ++ +  KL +++P + ++YVL+ N+Y++  RW  V R++  M
Sbjct: 359 SIWGALLASCKIHKNIKLAEIAARKLFKMEPNNSANYVLMMNLYSSLNRWVAVERLKHSM 418

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
              ++K  P WS+ +VN  +H F   G  H    EI+ +L  +++  R+ GY P    V 
Sbjct: 419 TVLAMKIPPVWSWTQVNQSIHVFSTEGRPHPEEGEIYFELYQLISEIRKLGYAPDLNCVC 478

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
            NI + EKE+ L  H+EKLA+ +G+++   G+ I+IVK   IC DCH++ KY S + +RE
Sbjct: 479 QNIDDNEKEKILMSHTEKLAMVYGVMKMKGGSPIRIVKNTRICFDCHTVAKYISLVRKRE 538

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           I+LRD  RFH+FK+G C+C D W
Sbjct: 539 ILLRDGGRFHHFKNGKCACNDRW 561



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 69  LISSASLHKSIDYALSIFDHF-----TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
           L+S  S+   ID AL+I +       TP N+  +  LI G ++N  +   +  F  M   
Sbjct: 125 LVSGYSMQGRIDEALTIINRIKSSGITP-NVVSWTALISGCSQNEKYMDALKIFSQMQAE 183

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           +V+PN  T   +  + A  SLL  G  LHC  +K G   D +V   L DMY + GK + A
Sbjct: 184 NVKPNSTTICSLLCACAGPSLLKKGEELHCFSMKLGFVDDIYVATALIDMYSEAGKLKVA 243

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDG 239
           + VF++  EK    ++  WN ++ G +   +  + + L+  M ++++     ++ +L+  
Sbjct: 244 YNVFNKIQEK----TLPCWNCMMMGYAIHSHGEEVMILYDKMRERHIRPDAITFTALLSA 299

Query: 240 FMRKGDLKKAGELFEQMPE 258
               G + +  + F+ M E
Sbjct: 300 CKNSGLVDEGWKYFDSMQE 318


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 203/645 (31%), Positives = 322/645 (49%), Gaps = 78/645 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           ++  L+ S    + +D A  +F+    K+   FN LI G  ++  +   I  F+ M +  
Sbjct: 186 VSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSG 245

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            +P+  T+  V K+V  L   +LG+ LH L V +G   DA V   + D Y +  +     
Sbjct: 246 HQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETR 305

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSK----------------IGYLRKAVELFGMMP-K 227
            +FDE PE +     + +NV+I+  S+                +G+ R+      M+   
Sbjct: 306 MLFDEMPELD----FVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIA 361

Query: 228 KNVASWV----------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
            N++S                        SL+D + +    ++A  +F+ +P++  VSWT
Sbjct: 362 ANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWT 421

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           A+I+G+ Q G     L +F +M  + +RA+  T  + L A A   +L  G ++H +I   
Sbjct: 422 ALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFI-IR 480

Query: 326 DFGLKGAI-GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
              L+    G+ LVDMYAKCG+I+ A  VF E  +++ ++W A+I   A +G  E AI  
Sbjct: 481 SGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGA 540

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F KM+ SG +PD    L +LTAC + G V+    +F +M   Y I P  KH+  +++LL 
Sbjct: 541 FAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLG 600

Query: 445 RVGQ--------DSQGYQNSQNSFTKLLQL---------------------KPKHPSSYV 475
           R G+        D   ++  +  ++ +L                       K +  ++YV
Sbjct: 601 RNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYV 660

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
            +SNIYAA G W+ V  V+  M+ R IKK P +S++EVN  +H F +    H    EI  
Sbjct: 661 SMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQTHPNGDEIVR 720

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
           K+ ++ A    +GY P T  V+ ++ E+ K E+L  HSE+LA+AF LI T  G  I ++K
Sbjct: 721 KINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALISTPEGCPIVVMK 780

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            L  C DCH+ +K  SKI +REI +RDT RFH+F +G CSC DYW
Sbjct: 781 NLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 161/386 (41%), Gaps = 51/386 (13%)

Query: 66  TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS- 124
           T  +IS       +  A  +FD    + +  + +L+   A NSHF      F  M R S 
Sbjct: 82  TNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSS 141

Query: 125 -VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTR 181
              P+ +T+  +          +    +H   VK G + + F+ V   L   Y ++ +  
Sbjct: 142 CTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLD 201

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV- 234
            A  +F+E PEK+     + +N LI G  K G   +++ LF      G  P     S V 
Sbjct: 202 LACVLFEEIPEKDS----VTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVL 257

Query: 235 ------------------SLIDGFMRKGDLK--------------KAGELFEQMPEKGVV 262
                             S+  GF R   +               +   LF++MPE   V
Sbjct: 258 KAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFV 317

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH--N 320
           S+  +I+ +SQ  + E +L  F +M   G    +F   + LS  A + +L+ G ++H   
Sbjct: 318 SYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQA 377

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            ++  D  L   +G +LVDMYAKC   E A L+F    ++  ++WTA+I G    G +  
Sbjct: 378 LLATADSILH--VGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGA 435

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTA 406
            ++ F KM  S    D + F  +L A
Sbjct: 436 GLKLFTKMRGSNLRADQSTFATVLKA 461



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 4/208 (1%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N ++    + G +  A +++  MP KN  S  ++I G ++ GD+  A +LF+ MP++ VV
Sbjct: 52  NFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVV 111

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHN 320
           +WT ++  +++N   ++A  +F QM  +      +  T  + L  C       A  +VH 
Sbjct: 112 TWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHA 171

Query: 321 YISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           +     F       +   L+  Y +   ++ A ++F E  EKD +T+  +I G    G Y
Sbjct: 172 FAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLY 231

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            ++I  F KM  SG +P    F  +L A
Sbjct: 232 TESIHLFLKMRQSGHQPSDFTFSGVLKA 259


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 289/535 (54%), Gaps = 74/535 (13%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L +MYV+ G    A  VFD+ P++N    V+ W  +I+  S      KA+E   +M ++ 
Sbjct: 6   LINMYVKFGLLHDAQDVFDKMPDRN----VVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 230 VASWV------------------------------------SLIDGFMRKGDLKKAGELF 253
           V   +                                    +LID + R G+L+ A  +F
Sbjct: 62  VRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVF 121

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           ++M    +V W+++I GF+QN + ++AL +F +M  AG  A   T+ S L AC  +  LE
Sbjct: 122 DEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLE 181

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G +VH ++   D  L   +  AL+DMY KCG++E A+ VF    EKD+++W+ MI GLA
Sbjct: 182 LGRQVHVHVLKYDQDL--ILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLA 239

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            +G  ++A++ F+ M   G +P+    + +L AC ++G V+  L +F SM+  + I+P  
Sbjct: 240 QNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGR 299

Query: 434 KHHTVVVNLLSRVGQDSQG-------------------------YQNSQ---NSFTKLLQ 465
           +H+  +++LL R G+ S+                          ++N     ++  ++L+
Sbjct: 300 EHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILR 359

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L P+   +YVLLSNIYA   RW DVA VR  M  R IKK+PG S+IEV+  +H F  G  
Sbjct: 360 LDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDR 419

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQT 582
            H   +EI+ +L  ++      GY+P T +VL +++ E+ +++L  HSEKLA+ FGL+  
Sbjct: 420 SHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSL 479

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             G TI+I K L ICGDCH   K  +K+ QR IV+RD  R+H+F+DG CSC D+W
Sbjct: 480 PRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 165/360 (45%), Gaps = 48/360 (13%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N+  +  +I   +        +   V MLR  VRPN  TY  V ++   
Sbjct: 19  AQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGVRPNMFTYSSVLRACDG 78

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L   R LHC I+K G++ D FVR  L D+Y + G+   A +VFDE      +  +++
Sbjct: 79  LFNL---RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMV----TGDLVV 131

Query: 202 WNVLINGCSKIGYLRKAVELF------GMMPKKNVASWV--------------------- 234
           W+ +I G ++     +A+ LF      G + ++   + V                     
Sbjct: 132 WSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHVL 191

Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                     +L+D + + G L+ A  +F +M EK V+SW+ MI G +QNG +++AL +F
Sbjct: 192 KYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLF 251

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYA 342
             M   G++ N  T+V  L AC+  G +E G+   + +    FG+         ++D+  
Sbjct: 252 ESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMK-ELFGIDPGREHYGCMIDLLG 310

Query: 343 KCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           + G + EA  L+     E D +TW A++    +H   + AI   K+++    +  GT  L
Sbjct: 311 RAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVL 370



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 119/261 (45%), Gaps = 15/261 (5%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++ + +    LRQ+H  II   L +   + + LI   S    ++ AL +FD     +L 
Sbjct: 71  SVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLV 130

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           +++ +I G A+NS     +  F  M R      + T   V ++   L+LL LGR +H  +
Sbjct: 131 VWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVHVHV 190

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           +K   + D  +   L DMY + G    A  VF    EK+    V+ W+ +I G ++ GY 
Sbjct: 191 LK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKD----VISWSTMIAGLAQNGYS 244

Query: 216 RKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-----KGVVSWTA 266
           ++A++LF  M     K N  + V ++      G +++    F  M E      G   +  
Sbjct: 245 KEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGC 304

Query: 267 MINGFSQNGEAEKALAMFFQM 287
           MI+   + G   +A+ +  +M
Sbjct: 305 MIDLLGRAGRLSEAVDLINEM 325


>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 794

 Score =  309 bits (791), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 180/463 (38%), Positives = 268/463 (57%), Gaps = 53/463 (11%)

Query: 219 VELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           V+L  ++ +  VA+ V    +L+D + + GDL  A ++F++M  + V +W +++ G +Q 
Sbjct: 131 VQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASARKVFDEMTVRDVATWNSLLAGLAQG 190

Query: 275 GEAEKALAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            E   ALA+F      FQ L +    N+ T+V+ALSACA++G L+ G+ VH +     FG
Sbjct: 191 TEPNLALALFHRLANSFQELPSREEPNEVTIVAALSACAQIGLLKDGMYVHEF--AKRFG 248

Query: 329 LKG--AIGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQY 384
           L     +  +L+DMY+KCG++  A  VF   K +D  L+++ A I   ++HG    A++ 
Sbjct: 249 LDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRL 308

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M  +  EPDG  +LA+L  C +SG V   L  F+SMR    + P++KH+  +V+LL 
Sbjct: 309 FDEMP-TRIEPDGVTYLAVLCGCNHSGLVDDGLRVFNSMR----VAPNMKHYGTIVDLLG 363

Query: 445 RVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSSYVL 476
           R G+ ++ Y                              ++ +  KL +L       YVL
Sbjct: 364 RAGRLTEAYDTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELGSNVDGDYVL 423

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           LSN+YA++ RW DV RVR  M+   ++K PG+SY E++G +H+F  G   H   +EI+  
Sbjct: 424 LSNVYASKARWMDVGRVRDTMRSNDVRKVPGFSYTEIDGVMHKFINGDKEHPRWQEIYRA 483

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
           LEDI++   E GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG T++++K 
Sbjct: 484 LEDIVSRISELGYEPETSNVLHDIGEEEKQYALCYHSEKLAIAFGLIATPPGETLRVIKN 543

Query: 594 LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           L ICGDCH + K  SK   R IV+RD  RFH F+DG CSCRDY
Sbjct: 544 LRICGDCHVVAKLISKAYGRVIVIRDRARFHRFEDGQCSCRDY 586


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 187/659 (28%), Positives = 335/659 (50%), Gaps = 70/659 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI--FNVLIRGLA 105
           R IH    +  L     ++T L+   +    +  A ++F+  + ++  I  +N +I   +
Sbjct: 127 RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFS 186

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            ++     I     M +  V PN  T   +  ++   + L  G+ +H   +++    +  
Sbjct: 187 FHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVV 246

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNK----------------SESVLLWN------ 203
           ++  L DMY +      A K+F+   +KN                 S+++ L++      
Sbjct: 247 LQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIY 306

Query: 204 ----------VLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKA 249
                      ++  C+++  L++  +L   M K     +     SLI  + + G +  A
Sbjct: 307 GLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNA 366

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
               ++M  K  VS++A+I+G  QNG AEKAL +F QM  +G+     T+++ L AC+ +
Sbjct: 367 VGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHL 426

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            AL+ G   H Y     F    +I  A++DMY+KCG I  +  +F   + +D+++W  MI
Sbjct: 427 AALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMI 486

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            G  IHG   +A+  F+++   G +PD    +A+L+AC +SG V     +F SM  ++ I
Sbjct: 487 IGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNI 546

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSFT 461
           +P + H+  +V+LL+R G   + Y                            +  +    
Sbjct: 547 KPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSK 606

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
           K+  L P+   ++VL+SNIY++ GRW D A +R++ +    KK PG S++E++G +H F 
Sbjct: 607 KIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFI 666

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFG 578
            G   H  +  I+ KL++++   ++ GY   + +VLH+++EE KE+ L  HSEK+A+AFG
Sbjct: 667 GGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFG 726

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++ T+P + I + K L IC DCHS +K+ + +++REI +RD +RFH+FKDG C+C+D+W
Sbjct: 727 ILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 185/413 (44%), Gaps = 42/413 (10%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           I LI+     +Q+R        H +  S    TQL         I  A  +FD     ++
Sbjct: 13  ILLINWRQRHRQIRSFSPHPHPHRVSDSDAAATQLARYHISRNEIQLARHVFDQIPKPSV 72

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            ++N++IR  A +  FQ  I  ++ ML+L V P   T+PF+ K+ +SL  L LGR +H  
Sbjct: 73  VLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTH 132

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS---- 210
               G+  D +V   L  MY + G    A  +F+    +++   ++ WN +I   S    
Sbjct: 133 AHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDR--DIVAWNAMIAAFSFHAL 190

Query: 211 ------------KIGYLRKAVELFGMMPK-----------------------KNVASWVS 235
                       + G    +  L  ++P                         NV    +
Sbjct: 191 HAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTA 250

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRA 294
           L+D + +   L  A ++F  + +K  V W+AMI G+  +     ALA++  ML   G+  
Sbjct: 251 LLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNP 310

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
              T+ + L ACA++  L+ G ++H ++  +   L   +G +L+ MYAKCG ++ A    
Sbjct: 311 TPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFL 370

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            E   KD ++++A+I G   +G  E+A+  F++M  SG  P     +A+L AC
Sbjct: 371 DEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPAC 423



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 67/329 (20%), Positives = 129/329 (39%), Gaps = 39/329 (11%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K+ +++H  +I   +   + +   LIS  +    +D A+   D    K+   ++ +I G 
Sbjct: 329 KRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGC 388

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
            +N + +  +  F  M    + P   T   +  + + L+ L  G   H   V  G   D 
Sbjct: 389 VQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDT 448

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            +   + DMY + GK   + ++FD    ++    ++ WN +I G    G   +A+ LF  
Sbjct: 449 SICNAIIDMYSKCGKITISREIFDRMQNRD----IISWNTMIIGYGIHGLCVEALSLFQE 504

Query: 225 MP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           +     K +  + ++++      G + +    F  M               SQN   +  
Sbjct: 505 LQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSM---------------SQNFNIKPR 549

Query: 281 LAMFFQMLDAGVRAND----FTVVSALSACAKV---GALEAGVRVHNYISCND-----FG 328
           +A +  M+D   RA +    +T +  +     V   GAL A  R H  I   +       
Sbjct: 550 MAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQ 609

Query: 329 LKGAIGTA----LVDMYAKCGNIEAASLV 353
           L G  GT     + ++Y+  G  + A+ +
Sbjct: 610 LLGPEGTGNFVLMSNIYSSVGRWDDAAYI 638


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 185/604 (30%), Positives = 329/604 (54%), Gaps = 71/604 (11%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML-RLSVRP 127
           +ISS      +D A   F+    +++  +N +I G  ++   +  +  F  ML   S +P
Sbjct: 217 MISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKP 276

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGAFK 185
           ++ T      + A+L  L LG+ +H  I+++  E+D F  V   L  MY + G    A K
Sbjct: 277 DKFTLASALSACANLENLKLGKQIHAHIIRT--EFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
           + +++                                 M+   +V ++ +L+DG+++ GD
Sbjct: 335 IIEQS---------------------------------MISNLDVIAFTALLDGYVKLGD 361

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           +  A  +F+ +  + VV+WTAMI G+ QNG  + A+ +F  M+  G + N++T+ + LS 
Sbjct: 362 INPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSV 421

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLT 364
            + + +L+ G ++H   + +      ++  AL+ MYAK G+I  A  VF     ++D +T
Sbjct: 422 SSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTIT 481

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           WT+MI  LA HG  E+A+  F++M+ +G +PD   ++ +L+AC + G V+   ++++ M+
Sbjct: 482 WTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQ 541

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNS 456
             + I P+  H+  +++L  R G  Q++  +                          + +
Sbjct: 542 NAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELA 601

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           + +  +LL ++P++  +Y  L+N+Y+A G+W++ A +R  M+ + +KKD G+S++++   
Sbjct: 602 EVAAERLLLIEPENSGAYSALANVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNK 661

Query: 517 VHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKL 573
           VH F  + G H     I+  +  I    ++ G++P TE VLH+++EE KE+ L  HSEKL
Sbjct: 662 VHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKL 721

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           A+AFGLI T   TT++I+K L +C DCHS +K+ SK+  REI++RD TRFH+FK+G CSC
Sbjct: 722 AIAFGLICTPENTTLRIMKNLRVCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSC 781

Query: 633 RDYW 636
           RDYW
Sbjct: 782 RDYW 785



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 159/352 (45%), Gaps = 69/352 (19%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +F+     +   +  +I G  +   F++ I  F  M+   V P + T   V  S
Sbjct: 95  LEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLAS 154

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A++  L +GR +H  +VK G+     V   L +MY + G    A  VFD          
Sbjct: 155 CAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDR--------- 205

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
                                     M  K+ +SW ++I   M+ G +  A   FEQM E
Sbjct: 206 --------------------------MKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIE 239

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVR 317
           + VVSW AMI+G++Q+G   +AL +F +ML D+  + + FT+ SALSACA +  L+ G +
Sbjct: 240 RDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQ 299

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIE----------------------------- 348
           +H +I   +F   GA+G AL+ MY+K G +E                             
Sbjct: 300 IHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKL 359

Query: 349 ----AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
                A  +F   + +D++ WTAMI G   +G  + A++ F+ M+  G +P+
Sbjct: 360 GDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPN 411



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 129/250 (51%), Gaps = 32/250 (12%)

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           V L N L+N  +K G++  A  +F  MP K+V SW  ++ G+ + G L++A  +FE+MPE
Sbjct: 48  VFLMNNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPE 107

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
              VSWTAMI G++Q G+ E A+ MF +M+   V    FT+ + L++CA V  L  G +V
Sbjct: 108 PDSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVECLGIGRKV 167

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-------------------- 358
           H+++  +      ++  +L++MYAK G+   A +VF   K                    
Sbjct: 168 HSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLV 227

Query: 359 -----------EKDLLTWTAMIWGLAIHGRYEQAIQYFKKM-MYSGTEPDGTVFLAILTA 406
                      E+D+++W AMI G   HG   +A+  F KM M S ++PD     + L+A
Sbjct: 228 DLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSA 287

Query: 407 CWYSGQVKLA 416
           C     +KL 
Sbjct: 288 CANLENLKLG 297



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 61/266 (22%), Positives = 112/266 (42%), Gaps = 24/266 (9%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           IK   KP NN T   ++S+  S  S    RQIHA        +S  ++  LI+  +   S
Sbjct: 404 IKEGPKP-NNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALITMYAKSGS 462

Query: 79  IDYALSIFDHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           I+ A  +F+    K   I +  +I  LA++   +  ++ F  ML   ++P+ +TY  V  
Sbjct: 463 INDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHITYVGVLS 522

Query: 138 SVASLSLLSLGRGLHCL------IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +   + L+  GR  + L      I+ +   Y   +     D++ + G  + A    +  P
Sbjct: 523 ACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMI-----DLFGRAGLLQEAHAFIENMP 577

Query: 192 EKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
            +     V+ W  L+  C     +     A E   ++  +N  ++ +L + +   G  + 
Sbjct: 578 IE---PDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWEN 634

Query: 249 AGELFEQMPEKGV-----VSWTAMIN 269
           A  + + M +KGV      SW  + N
Sbjct: 635 AANIRKSMKDKGVKKDQGFSWVQIKN 660


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 191/655 (29%), Positives = 318/655 (48%), Gaps = 84/655 (12%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N++  T +     +S    +++++H   I   + + + +   LI +    K ++ A 
Sbjct: 129 KPHNSVFLT-VAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGAR 187

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSC------ISHFVFMLRLSVRPNRLTYPFVSK 137
            +FD    K++      +   + +S + +C      ++ F  M    V+PN +T   +  
Sbjct: 188 RVFDDLVVKDV------VSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILP 241

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + + L  L  GR +H   V+ G+  + FV   L  +Y +    + A  VFD         
Sbjct: 242 ACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFD--------- 292

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
                                     +MP ++V SW  ++  +    +  K   LF QM 
Sbjct: 293 --------------------------LMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMS 326

Query: 258 EKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
            KGV     +W A+I G  +NG+ EKA+ M  +M + G + N  T+ S L AC+ + +L 
Sbjct: 327 SKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLR 386

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G  VH Y+  +         TALV MYAKCG++  +  VF     KD++ W  MI   A
Sbjct: 387 MGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANA 446

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
           +HG   + +  F+ M+ SG +P+   F  +L+ C +S  V+  L  F+SM  D+ +EP  
Sbjct: 447 MHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDA 506

Query: 434 KHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQ 465
            H+  +V++ SR G+  + Y+  Q                             S  KL +
Sbjct: 507 NHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFE 566

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           ++P +P +YV L NI      W + +  R LM+ R I K PG S+++V   VH F  G  
Sbjct: 567 IEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWLQVGDRVHTFVVGDK 626

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQT 582
            +  + +I++ L+++    +  GY P T++VL +I +EEK E+L  HSEKLA+AFG++  
Sbjct: 627 NNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESLCSHSEKLAVAFGILNL 686

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
              ++I++ K L ICGDCH+ +KY SK+    I++RD+ RFH+F++G CSC+D W
Sbjct: 687 NGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHFRNGNCSCQDLW 741



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/173 (24%), Positives = 83/173 (47%), Gaps = 2/173 (1%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+   +  GD ++A +LF+ +P+    + + +I+ F+  G   +A+ ++  +   G++ +
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 296 DFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +   ++   AC   G       VH + I C        +G AL+  Y KC  +E A  VF
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMS-DAFLGNALIHAYGKCKCVEGARRVF 190

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +   KD+++WT+M       G     +  F +M ++G +P+     +IL AC
Sbjct: 191 DDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPAC 243


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 201/593 (33%), Positives = 298/593 (50%), Gaps = 82/593 (13%)

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLS-LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQL 177
           MLRL +RPN  T+P   K+ AS    S +G  +H L ++ G +  D FV     DMY + 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLI------------------------------- 206
           G+ + A  +F E P +N    V+ WN ++                               
Sbjct: 61  GRLKLARHLFGEMPNRN----VVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSA 116

Query: 207 ----NGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
               N C+   YL    +  G + K     +V+   S++D + +     KA  +F+ M  
Sbjct: 117 CAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGV 176

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           +  VSW +M+  ++QNG  E+A A +     +G    DF V SAL+ CA +  L  G  +
Sbjct: 177 RNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRAL 236

Query: 319 HNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           H     SC D  +   + +ALVDMY KCG +E A  +F ET +++L+TW AMI G A  G
Sbjct: 237 HAVAVRSCIDANI--FVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIG 294

Query: 377 RYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
             + A+  F  M+ SG T P+    + ++T+C   G  K     F++MR  + IEP  +H
Sbjct: 295 DAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEH 354

Query: 436 HTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKLLQLK 467
           +  VV+LL R G + Q Y+  Q                             +  KL +L 
Sbjct: 355 YACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELD 414

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--H 525
           P+   ++VLLSN++A+ GRW +   +R  M+   IKKDPG S++     VH F A    H
Sbjct: 415 PQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKH 474

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTP 584
           ++  EI + L  +    +  GYMP T++ L++++EE++E+ +  HSEKLALAFGLI   P
Sbjct: 475 EMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPP 534

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           G  I+I+K L IC DCH   K+ S I  REI++RD  RFH+FK   CSC DYW
Sbjct: 535 GVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 86/183 (46%), Gaps = 9/183 (4%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A ++FD    +N   +  ++   A+N   +   + ++   R    P          + A 
Sbjct: 167 ARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAG 226

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L LGR LH + V+S ++ + FV   L DMY + G    A ++F ETP++N    ++ 
Sbjct: 227 LLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRN----LVT 282

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMRKGDLKKAGELFEQM 256
           WN +I G + IG  + A+ +F  M +      N  + V++I    R G  K   ELFE M
Sbjct: 283 WNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETM 342

Query: 257 PEK 259
            E+
Sbjct: 343 RER 345


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 275/534 (51%), Gaps = 75/534 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK 227
           YV+ G    A K+FDE P +N    V  WN ++ G +  G   +++  F      GM P 
Sbjct: 118 YVKNGDLETARKLFDEMPARN----VATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 173

Query: 228 --------------------KNVASWV-------------SLIDGFMRKGDLKKAGELFE 254
                               + V ++V             SL   +MR G L+       
Sbjct: 174 EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 233

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
            +P   +VS    I+G +QNG+AE AL  F  M  AGV AN  T VSA+++C+ + AL  
Sbjct: 234 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 293

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G ++H             + T+LV MY++CG +  +  V  E    DL+  +AMI     
Sbjct: 294 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 353

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           HG  ++A+  FK+MM +G EP+   FL +L AC +SG     +N F+ M   Y ++PSVK
Sbjct: 354 HGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVK 413

Query: 435 HHTVVVNLLSRVG----------------------------QDSQGYQNSQNSFTKLLQL 466
           H+T +V+LL R G                            +  + +  ++    ++++L
Sbjct: 414 HYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIEL 473

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
            P   +SYVLLSNI A   RW+DV++VR  M+ ++++K+PG S++E+ G +H+F  G   
Sbjct: 474 DPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDES 533

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTT 583
           H   +EI   LE++M   R+ GY P    V H+++ EEKE +L  HSEKLA+AF  +   
Sbjct: 534 HSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLP 593

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            G  I+++K L +C DCH  +K  SK+  REIV+RD +RFH+FKDG CSC DYW
Sbjct: 594 EGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 110/205 (53%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N L+   + +G    A  LF  +PK+NV SW  LI G+++ GDL+ A +LF++MP + V 
Sbjct: 81  NHLLLAYADLGDFPTARGLFERIPKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVA 140

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W AM+ G + +G  E++L  FF M   G++ +++ + S    CA +  + +G +VH Y+
Sbjct: 141 TWNAMVAGLTNSGLNEESLGFFFAMRREGMQPDEYGLGSLFRCCAGLRDVVSGRQVHAYV 200

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
             +       +G++L  MY +CG +             ++++    I G   +G  E A+
Sbjct: 201 VRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGAL 260

Query: 383 QYFKKMMYSGTEPDGTVFLAILTAC 407
           ++F  M  +G E +   F++ +T+C
Sbjct: 261 EFFCLMRGAGVEANAVTFVSAVTSC 285



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 153/359 (42%), Gaps = 39/359 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI     +  ++ A  +FD    +N+  +N ++ GL  +   +  +  F  M R  ++P+
Sbjct: 114 LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 173

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
                 + +  A L  +  GR +H  +V+SG++ D  V   LA MY++ G  R       
Sbjct: 174 EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 233

Query: 189 ETPEKN---------------KSESVLLWNVLING----------------CSKIGYLRK 217
             P  N                +E  L +  L+ G                CS +  L +
Sbjct: 234 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 293

Query: 218 AVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
             ++  +  K  V   V    SL+  + R G L  +  +  +     +V  +AMI+ +  
Sbjct: 294 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 353

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           +G  +KA+ +F QM+ AG   N+ T ++ L AC+  G  + G+     ++   +GL+ ++
Sbjct: 354 HGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT-KTYGLQPSV 412

Query: 334 G--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              T +VD+  + G + EA  L+     + D + W  ++       +++ A +  ++++
Sbjct: 413 KHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 471


>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
          Length = 681

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 205/639 (32%), Positives = 304/639 (47%), Gaps = 93/639 (14%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSR------ITTQLISSASLHKSID------- 80
           + +L+  S + +Q++Q HA++ +  L AS        +  +L+     H+  D       
Sbjct: 35  LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94

Query: 81  --YALSIFDHFTPKNLHIFNVLIRGLAEN------SHFQSCISH-FVFMLRLSVRPNRLT 131
             Y L++F      +    N L+R L         S F+    H F F+L  +   N L 
Sbjct: 95  YAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLL--ASISNHLN 152

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
               S S  S     LG  +H L VK+G   D FVR  L   Y   G      +VFDE P
Sbjct: 153 AAGPSASACSF----LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELP 208

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                                               ++V +W  ++ G++R G +  A E
Sbjct: 209 RV----------------------------------RDVLTWNEVLAGYVRAGMMTVARE 234

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F++MP +  +SW+ ++ G+ +  E E AL +F  M++ GVR N   VV+ALSA A++G 
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           LE G  VHN +  +   +   +G ALVDMYAKCG +  A  VF   + +D+  W AMI G
Sbjct: 295 LEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICG 354

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           LA HG    A++ F++ +  G  P    F+ +L  C  SG V     +F  +   Y IEP
Sbjct: 355 LAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEP 414

Query: 432 SVKHHTVVVNLLSRVG------QDSQGYQNSQNSF----------------------TKL 463
            ++H+  +V+LL R G      +  +G   + +                         KL
Sbjct: 415 EMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKL 474

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           ++L P H   YVLLS IYA   +W +V  VR LM  R   K  GWS +E +G VH+F  G
Sbjct: 475 IELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVG 534

Query: 524 G--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLI 580
              HK + +I+  L+ I     E GY+P    VLH+I +EEK  A+  HSE+LA+A+G I
Sbjct: 535 DTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFI 594

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
               G+ I+IVK L +CGDCH   K  + + QREI++RD
Sbjct: 595 VLEAGSPIRIVKNLRVCGDCHEFSKMVTMVFQREIIVRD 633


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 196/667 (29%), Positives = 329/667 (49%), Gaps = 88/667 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +HA  IL  L +   ++  L+S  S    +  A  +FD    ++   +N L+ G    
Sbjct: 129 RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRA 188

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS--LLSLGRGLHCLIVKSGVEYDAF 165
              +  +  F  M R  +  N      V K  +      + +   +H  ++K+G++ D F
Sbjct: 189 GAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------CSKIG 213
           +   + DMY + G    A  +F    E N    V+++N +I G             S+  
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQEPN----VVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 214 YLRKAVELFGMMPKK----------NVASWV-----------------------SLIDGF 240
            L   V+  GM P +          N+A ++                       +LID +
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLY 364

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
              G ++     F   P+  +V+WTAM++G  QN   EKAL++F + L AG++ + FT+ 
Sbjct: 365 FNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTIS 424

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S ++ACA +    AG ++  + + + F     +G + V MYA+ G+++AA+  F E +  
Sbjct: 425 SVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH 484

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D+++W+A+I   A HG    A+ +F +M+ +   P+   FL +LTAC + G V   L ++
Sbjct: 485 DVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYY 544

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY------------------------- 453
           ++M  DY + P++KH T VV+LL R G+  D++ +                         
Sbjct: 545 ETMNKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNGIFHADPVIWRSLLASCRIHRD 604

Query: 454 -QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
            +  Q    ++++L+P   +SYV+L N+Y   G     ++ R LM++R +KK+PG S+IE
Sbjct: 605 LERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIE 664

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHS 570
           +   VH F AG   H  +  I++KLE++++   E+     TE     I + ++  + CHS
Sbjct: 665 LKCGVHSFVAGDKSHPESSAIYTKLEEMLSRI-EKLATTDTE-----ISKREQNLMNCHS 718

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           EKLA+A G+I       I+++K L +C DCHS MK  SK   REI+LRD  RFH+F+DG+
Sbjct: 719 EKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGS 778

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 779 CSCADYW 785



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 142/364 (39%), Gaps = 83/364 (22%)

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
           R +V  N L   +  + +A LSL +L R       ++GV+ D F          + G  R
Sbjct: 72  RNAVSFNLLIDAYSREGLAPLSLETLARAR-----RAGVDVDRFSYAAALAACSRAGHLR 126

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
               V         S  V + N L++  SK G + +A  +F +  +++  SW SL+ G++
Sbjct: 127 AGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYV 186

Query: 242 RKGDLKKAGELFEQMPEKG----------------------------------------- 260
           R G  ++   +F  M   G                                         
Sbjct: 187 RAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSD 246

Query: 261 VVSWTAMINGFSQNGEAEKALAMF----------FQMLDAG------------------- 291
           V   +AMI+ +++ G   +A A+F          F  + AG                   
Sbjct: 247 VFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 292 --------VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
                   ++  +FT  S L AC   G LE G ++H  +    F     IG+AL+D+Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G +E     F  + + D++TWTAM+ G   +  +E+A+  F + + +G +PD     ++
Sbjct: 367 SGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSV 426

Query: 404 LTAC 407
           + AC
Sbjct: 427 MNAC 430



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+  + R G    A  L ++MP +  VS+  +I+ +S+ G A  +L    +   AGV  
Sbjct: 48  TLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDV 107

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F+  +AL+AC++ G L AG  VH     +       +  +LV MY+KCG +  A  VF
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
              +E+D ++W +++ G    G  E+ ++ F  M   G   +     +++  C   G 
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGD 225



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 51/298 (17%)

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING---------------- 208
           F+R  L   Y +LG    A ++ DE P +N     + +N+LI+                 
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRN----AVSFNLLIDAYSREGLAPLSLETLAR 99

Query: 209 -------------------CSKIGYLR--KAVELFGMMPKKNVASWVS--LIDGFMRKGD 245
                              CS+ G+LR  +AV    ++   +   +VS  L+  + + G+
Sbjct: 100 ARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGE 159

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           + +A  +F+   E+  VSW ++++G+ + G  E+ + +F  M   G+  N F + S +  
Sbjct: 160 MGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKC 219

Query: 306 CAKV--GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           C+    G ++    VH  +          + +A++DMYAK G +  A+ +F   +E +++
Sbjct: 220 CSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVV 279

Query: 364 TWTAMIWGLA----IHGR--YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
            +  MI G      + G+    +A+  + ++   G +P    F ++L AC  +G ++ 
Sbjct: 280 MFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/204 (22%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE    S++ + N    L   +QIH Q+I +       I + LI        ++     F
Sbjct: 318 TEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCF 377

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                 ++  +  ++ G  +N   +  +S F   L   ++P+  T   V  + ASL++  
Sbjct: 378 RSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVAR 437

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G  + C   KSG +    +      MY + G    A + F E     +S  V+ W+ +I
Sbjct: 438 AGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM----ESHDVVSWSAVI 493

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV 230
           +  ++ G  R A+  F  M    V
Sbjct: 494 SCHAQHGCARDALHFFDEMVDAKV 517


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 179/578 (30%), Positives = 292/578 (50%), Gaps = 67/578 (11%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           +H       ++++HAQII  NL     +  +LIS+ SL   ++ A+++F+     N+H++
Sbjct: 30  LHKCTDFNHIKEVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLY 89

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LIR   +NS      + F  M +  +  +  TYPF+ K+      L   + +HC + K
Sbjct: 90  NTLIRAHVQNSQSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEK 149

Query: 158 SGVEYDAFVRVHLADMY---------------------------------VQLGKTRGAF 184
            G   D FV   L D Y                                 V+ G    A 
Sbjct: 150 YGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRAR 209

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244
           K+FDE  E++     + WN +++G  K G + +A  LF  MP++NV SW +++ G+ + G
Sbjct: 210 KLFDEMAERD----AVSWNTILDGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTG 265

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           D++ A  LF++MP K +V+WT +I+GF++ G A++A  ++ QM  AG++ +D T++S L+
Sbjct: 266 DMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILA 325

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA+ G L  G +VH  I          +  ALVDMYAKCG ++ A  +F E   +DL++
Sbjct: 326 ACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVS 385

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W  M+ GLA+HG  E+AIQ F KM   G +PD    +AIL AC ++G V   L++F+SM 
Sbjct: 386 WNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSME 445

Query: 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS------------------------- 459
            D+ I P ++H+  +++LL R G+  + ++  Q+                          
Sbjct: 446 RDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAVPLA 505

Query: 460 ---FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
                +L+ L+   P +Y +LSNI+AA G W  VA +R  M+   ++K  G S IE++  
Sbjct: 506 EKVLDRLITLEQSDPGNYSMLSNIFAAAGDWNSVANMRLQMKSTGVQKPSGASSIELDDE 565

Query: 517 VHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
           VH F      H    +I+  L  +    ++  Y P  +
Sbjct: 566 VHEFTVFDKSHPETDKIYQILVKLGQDLKQVAYAPEAD 603


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 183/534 (34%), Positives = 275/534 (51%), Gaps = 75/534 (14%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK 227
           YV+ G    A K+FDE P +N    V  WN ++ G +  G   +++  F      GM P 
Sbjct: 10  YVKNGDLETARKLFDEMPARN----VATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 228 --------------------KNVASWV-------------SLIDGFMRKGDLKKAGELFE 254
                               + V ++V             SL   +MR G L+       
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
            +P   +VS    I+G +QNG+AE AL  F  M  AGV AN  T VSA+++C+ + AL  
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G ++H             + T+LV MY++CG +  +  V  E    DL+  +AMI     
Sbjct: 186 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 245

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           HG  ++A+  FK+MM +G EP+   FL +L AC +SG     +N F+ M   Y ++PSVK
Sbjct: 246 HGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVK 305

Query: 435 HHTVVVNLLSRVG----------------------------QDSQGYQNSQNSFTKLLQL 466
           H+T +V+LL R G                            +  + +  ++    ++++L
Sbjct: 306 HYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVIEL 365

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--G 524
            P   +SYVLLSNI A   RW+DV++VR  M+ ++++K+PG S++E+ G +H+F  G   
Sbjct: 366 DPHDSASYVLLSNIRATSSRWEDVSKVRETMREQNVRKEPGVSWVELKGQIHQFCTGDES 425

Query: 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTT 583
           H   +EI   LE++M   R+ GY P    V H+++ EEKE +L  HSEKLA+AF  +   
Sbjct: 426 HSRQREIVECLEEMMTRIRQCGYAPDMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLP 485

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            G  I+++K L +C DCH  +K  SK+  REIV+RD +RFH+FKDG CSC DYW
Sbjct: 486 EGVPIRVMKNLRVCDDCHVAIKLMSKVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 95/176 (53%)

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           SW  LI G+++ GDL+ A +LF++MP + V +W AM+ G + +G  E++L  FF M   G
Sbjct: 2   SWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREG 61

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           ++ +++ + S    CA +  + +G +VH Y+  +       +G++L  MY +CG +    
Sbjct: 62  MQPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGE 121

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
                    ++++    I G   +G  E A+++F  M  +G E +   F++ +T+C
Sbjct: 122 AALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSC 177



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/359 (21%), Positives = 153/359 (42%), Gaps = 39/359 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI     +  ++ A  +FD    +N+  +N ++ GL  +   +  +  F  M R  ++P+
Sbjct: 6   LIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRREGMQPD 65

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
                 + +  A L  +  GR +H  +V+SG++ D  V   LA MY++ G  R       
Sbjct: 66  EYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALR 125

Query: 189 ETPEKN---------------KSESVLLWNVLING----------------CSKIGYLRK 217
             P  N                +E  L +  L+ G                CS +  L +
Sbjct: 126 ALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSDLAALAQ 185

Query: 218 AVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
             ++  +  K  V   V    SL+  + R G L  +  +  +     +V  +AMI+ +  
Sbjct: 186 GQQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGF 245

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           +G  +KA+ +F QM+ AG   N+ T ++ L AC+  G  + G+     ++   +GL+ ++
Sbjct: 246 HGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHSGLKDEGMNCFELMT-KTYGLQPSV 304

Query: 334 G--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              T +VD+  + G + EA  L+     + D + W  ++       +++ A +  ++++
Sbjct: 305 KHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSACKTQKKFDMAERIAERVI 363


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 192/667 (28%), Positives = 329/667 (49%), Gaps = 107/667 (16%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H+++I       + +   LI   +     +  L +FD    +N   +N +I   A+ 
Sbjct: 195 KQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQF 254

Query: 108 SHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            HF   +  F+ M      ++P++ T+  +    A+    + GR +H  ++++ +  +  
Sbjct: 255 GHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNII 314

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L  MY + G+   A ++F+   E+N       WN +I G  + G  ++A+ LF  M
Sbjct: 315 VETELVHMYSECGRLNYAKEIFNRMAERNAYS----WNSMIEGYQQNGETQEALRLFKQM 370

Query: 226 PKKNV-----------ASWVSL----------------------------IDGFMRKGDL 246
               +           +S VSL                            +D + + G +
Sbjct: 371 QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSM 430

Query: 247 KKAGELFEQM--PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
             A ++++Q    ++    W +++ G++  G  +++   F +ML++ +  +  T+V+ ++
Sbjct: 431 DYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVN 490

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
                                       + TALVDMY+KCG I  A  VF     K++++
Sbjct: 491 LLV-------------------------LETALVDMYSKCGAITKARTVFDNMNGKNIVS 525

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI G + HG  ++A+  +++M   G  P+   FLAIL+AC ++G V+  L  F SM+
Sbjct: 526 WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQ 585

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQN------------------------ 458
            DY IE   +H+T +V+LL R G  +D++ +                             
Sbjct: 586 EDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMG 645

Query: 459 --SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
             +  +L +L P++P  YV++SNIYAA GRWK+V  +R +M+ + +KKDPG S+IE+N  
Sbjct: 646 RLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSE 705

Query: 517 VHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA----LGCHS 570
           +  F AG   H   +EI++ L  +   ++  GY+P T ++L N+K+ KEE     L  HS
Sbjct: 706 IQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHS 765

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           E+LAL+ GLI     +TI++ K L ICGDCH+  K+ SKI+ R I+ RDT RFH+F++G 
Sbjct: 766 ERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGK 825

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 826 CSCGDYW 832



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 200/431 (46%), Gaps = 53/431 (12%)

Query: 24  KPSNNITETHIISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           KP++++      SLI     SNS ++ + IH Q+I +     + + T+++   +    +D
Sbjct: 64  KPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLD 123

Query: 81  ---YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
              YA  +F+    +NL  +N +I   A    +      F  ML++ V P+  T+    +
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALR 183

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
              +L     G+ +H  ++  G + D FV   L DMY +        KVFDE  E+N+  
Sbjct: 184 VCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ-- 241

Query: 198 SVLLWNVLINGCSKIGYLRKAVELF--------GMMPK---------------------- 227
             + WN +I+  ++ G+   A+ LF        G+ P                       
Sbjct: 242 --VTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQ 299

Query: 228 -----------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
                      KN+     L+  +   G L  A E+F +M E+   SW +MI G+ QNGE
Sbjct: 300 IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE 359

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
            ++AL +F QM   G++ + F++ S LS+C  +   + G  +HN+I  N    +G +   
Sbjct: 360 TQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVV 419

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           LVDMYAKCG+++ A  V+ +T +KD  T  W +++ G A  G  +++  +F +M+ S  E
Sbjct: 420 LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIE 479

Query: 395 PDGTVFLAILT 405
            D    + I+ 
Sbjct: 480 YDVLTMVTIVN 490



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 96/168 (57%), Gaps = 8/168 (4%)

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           DL  A +LFE+MPE+ + +W  MI  +++  +  +A  +F +ML  GV  ++FT  SAL 
Sbjct: 124 DLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALR 183

Query: 305 ACAKVGALEAGVRVHN-YISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETKEKD 361
            C  + + + G +VH+  I+C   G KG   +G AL+DMYAKC + E+   VF E  E++
Sbjct: 184 VCGALRSRDGGKQVHSKLIAC---GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERN 240

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTAC 407
            +TW ++I   A  G +  A+  F +M  S  G +PD   F  +LT C
Sbjct: 241 QVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLC 288


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 205/664 (30%), Positives = 335/664 (50%), Gaps = 80/664 (12%)

Query: 48  RQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           R +HA+++L    A+S  +   LI+  S    +  A+ +FD     NL  +  L+ GL +
Sbjct: 37  RCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPNLVSWTTLVSGLTQ 96

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           NS  +  ++ F  M R  + P +      +++ A+L+    G  LHC+ V+ G + + FV
Sbjct: 97  NSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFV 156

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
             +LADMY + G    A +VFD+ P+K+     + W  +I+G +K G L  AV  F  M 
Sbjct: 157 ASNLADMYSKSGLLVEACRVFDQMPQKD----AVAWTAMIDGYAKNGNLEAAVIAFRDMR 212

Query: 227 K----------------------------------------KNVASWVSLIDGFMRKGDL 246
           +                                        + VA   +L D + +  D+
Sbjct: 213 REGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADM 272

Query: 247 KKAGELFE-QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             A  + +       VVS T++I+G+ +    EKAL MF ++   GV  N+FT  S +  
Sbjct: 273 DNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKG 332

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA    LE G ++H  +          + + L+DMY KCG I  +  +F E +    + W
Sbjct: 333 CAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAW 392

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            A I  LA HG   +AI+ F +M  SG  P+   F+++LTAC ++G V   L +F SM+ 
Sbjct: 393 NAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKD 452

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQ---------------DSQGY-------------QNSQ 457
            + IEP  +H++ ++++  R G+               ++ G+             +  +
Sbjct: 453 HHGIEPKGEHYSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGE 512

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +   +++L+P +   +V LS IYA+ G+W+DV  VR LM+   IKK PG+S+++ N   
Sbjct: 513 IAADNMMKLEPDNTGVHVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKT 572

Query: 518 HRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLA 574
           H F  E   H   ++I+ KLE++    +E+GY+P T ++  N+++  K+  L  HSE++A
Sbjct: 573 HVFGSEDWSHPQQEKIYEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIA 632

Query: 575 LAFGLIQTTPGTTIKIVKK-LTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           +AF LI + P T   IVKK L IC DCHS +K+ SK+  R+I++RD +RFH+F  G CSC
Sbjct: 633 VAFALI-SMPATKPIIVKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSC 691

Query: 633 RDYW 636
            DYW
Sbjct: 692 GDYW 695


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  308 bits (789), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 191/636 (30%), Positives = 323/636 (50%), Gaps = 67/636 (10%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + + LI   + +  +  A  +FD    K + ++ +LI    +    +  +  F+  L   
Sbjct: 190 VGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDG 249

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
             P+R T   +  +   L  + LG  LH L ++ G   DA V   L DMY +      A 
Sbjct: 250 FEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK-SNIEQAM 308

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLR-KAVELFGMM----PKKNVASWVSLIDG 239
              ++  E+ +   V+ W  LI+G  + G    K + LFG M     K N  ++ S++  
Sbjct: 309 DYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKA 368

Query: 240 FMRKGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQM-------- 287
                D     ++   + +    +      A+++ ++++G  E+A  +F Q+        
Sbjct: 369 CANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISC 428

Query: 288 ---------------LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
                          +D G+ ++ F   S +SA A VG L  G ++H       FG    
Sbjct: 429 ITEGRDAPLDHRIGRMDMGISSSTFA--SLISAAASVGMLTKGQQLHAMTLKAGFGSDRF 486

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +  +LV MY++CG +E A   F E K++++++WT+MI GLA HG  E+A+  F  M+ +G
Sbjct: 487 VSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTG 546

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG----- 447
            +P+   ++A+L+AC + G V+    +F SM+ D+ + P ++H+  +V+LL+R G     
Sbjct: 547 VKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEA 606

Query: 448 -----------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
                                  +     +  + +   +++L+P+ P+ YVLLSN+YA  
Sbjct: 607 LEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADA 666

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGA 542
           G W +VAR+R+ M+  ++ K+ G S++EV    H F AG   H  A++I+ KL+ ++   
Sbjct: 667 GLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEI 726

Query: 543 REQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           +  GY+P T  VLH++ +E KE+ L  HSEK+A+AFGLI T+    I+I K L +C DCH
Sbjct: 727 KGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCH 786

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           S +KY SK ++REI+LRD+ RFH  KDG CSC +YW
Sbjct: 787 SAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/310 (26%), Positives = 141/310 (45%), Gaps = 51/310 (16%)

Query: 145 LSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
           L LGR LH  +++  + + DA V   L  +Y + G    A  VFD          ++ W 
Sbjct: 64  LRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGM---RGLRDIVSWT 120

Query: 204 VLINGCSKIGYLRKAVELFGMMPKK----------------------------------- 228
            + +  ++ G  R+++ L G M +                                    
Sbjct: 121 AMASCLARNGAERESLLLIGEMLESGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHK 180

Query: 229 ------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                 ++A   +LID   R GDL  A ++F+ + EK VV WT +I+ + Q   AE+A+ 
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F   L+ G   + +T+ S +SAC ++G++  G+++H+      F     +   LVDMYA
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYA 300

Query: 343 KCGNIEA----ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ-YFKKMMYSGTEPDG 397
           K  NIE     A+ VF   ++ D+++WTA+I G    G  E  +   F +M+    +P+ 
Sbjct: 301 K-SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNH 359

Query: 398 TVFLAILTAC 407
             + +IL AC
Sbjct: 360 ITYSSILKAC 369



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 5/203 (2%)

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEK 279
           L G +  ++     SL+  + R G +  A  +F+ M   + +VSWTAM +  ++NG   +
Sbjct: 75  LRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERE 134

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGTA 336
           +L +  +ML++G+  N +T+ +   AC     L   V        +  GL G   A+G+A
Sbjct: 135 SLLLIGEMLESGLLPNAYTLCAVAHACFP-HELYCLVGGVVLGLVHKMGLWGTDIAVGSA 193

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+DM A+ G++ +A  VF    EK ++ WT +I         E+A++ F   +  G EPD
Sbjct: 194 LIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPD 253

Query: 397 GTVFLAILTACWYSGQVKLALNF 419
                ++++AC   G V+L L  
Sbjct: 254 RYTMSSMISACTELGSVRLGLQL 276



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 164/370 (44%), Gaps = 46/370 (12%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +  S KP N+IT + I+    + +     RQ+HA +I  N  A+  +   L+S  +    
Sbjct: 351 LNESIKP-NHITYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGC 409

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +F+    ++      +I  + E     + + H +  + + +  +  T+  +  +
Sbjct: 410 MEEARRVFNQLYERS------MISCITEGR--DAPLDHRIGRMDMGISSS--TFASLISA 459

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            AS+ +L+ G+ LH + +K+G   D FV   L  MY + G    A + F+E  ++N    
Sbjct: 460 AASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRN---- 515

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ W  +I+G +K GY  +A+ LF  M     K N  ++++++      G +++  E F 
Sbjct: 516 VISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFR 575

Query: 255 QMP-EKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M  + G++     +  M++  +++G  ++AL    +M    ++A+     + L AC   
Sbjct: 576 SMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEM---PLKADALVWKTLLGAC--- 629

Query: 310 GALEAGVRVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEK 360
                  R H+ I   +   K  I            L ++YA  G  +  + +    ++ 
Sbjct: 630 -------RSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWDEVARIRSAMRDN 682

Query: 361 DLLTWTAMIW 370
           +L   T + W
Sbjct: 683 NLNKETGLSW 692


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 196/667 (29%), Positives = 329/667 (49%), Gaps = 88/667 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R +HA  IL  L +   ++  L+S  S    +  A  +FD    ++   +N L+ G    
Sbjct: 129 RAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYVRA 188

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS--LLSLGRGLHCLIVKSGVEYDAF 165
              +  +  F  M R  +  N      V K  +      + +   +H  ++K+G++ D F
Sbjct: 189 GAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSDVF 248

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------------CSKIG 213
           +   + DMY + G    A  +F    E N    V+++N +I G             S+  
Sbjct: 249 LVSAMIDMYAKKGALVEAAALFRSVQEPN----VVMFNTMIAGFCRTETVIGKEVASEAL 304

Query: 214 YLRKAVELFGMMPKK----------NVASWV-----------------------SLIDGF 240
            L   V+  GM P +          N+A ++                       +LID +
Sbjct: 305 TLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLY 364

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
              G ++     F   P+  +V+WTAM++G  QN   EKAL++F + L AG++ + FT+ 
Sbjct: 365 FNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTIS 424

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S ++ACA +    AG ++  + + + F     +G + V MYA+ G+++AA+  F E +  
Sbjct: 425 SVMNACASLAVARAGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEMESH 484

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D+++W+A+I   A HG    A+ +F +M+ +   P+   FL +LTAC + G V   L ++
Sbjct: 485 DVVSWSAVISCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYY 544

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY------------------------- 453
           ++M  DY + P++KH T VV+LL R G+  D++ +                         
Sbjct: 545 ETMTKDYGLSPTIKHCTCVVDLLGRAGRLADAEAFISNSIFHADPVIWRSLLASCRIHRD 604

Query: 454 -QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
            +  Q    ++++L+P   +SYV+L N+Y   G     ++ R LM++R +KK+PG S+IE
Sbjct: 605 LERGQLVANRIMELEPTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIE 664

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHS 570
           +   VH F AG   H  +  I++KLE++++   E+     TE     I + ++  + CHS
Sbjct: 665 LKCGVHSFVAGDKSHPESSAIYTKLEEMLSRI-EKLATTDTE-----ISKREQNLMNCHS 718

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           EKLA+A G+I       I+++K L +C DCHS MK  SK   REI+LRD  RFH+F+DG+
Sbjct: 719 EKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHHFRDGS 778

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 779 CSCADYW 785



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 83/364 (22%), Positives = 142/364 (39%), Gaps = 83/364 (22%)

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
           R +V  N L   +  + +A LSL +L R       ++GV+ D F          + G  R
Sbjct: 72  RNAVSFNLLIDAYSREGLAPLSLETLARAR-----RAGVDVDRFSYAAALAACSRAGHLR 126

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
               V         S  V + N L++  SK G + +A  +F +  +++  SW SL+ G++
Sbjct: 127 AGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVFDVAEERDDVSWNSLVSGYV 186

Query: 242 RKGDLKKAGELFEQMPEKG----------------------------------------- 260
           R G  ++   +F  M   G                                         
Sbjct: 187 RAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGDGTMDIAEAVHGCVIKAGLDSD 246

Query: 261 VVSWTAMINGFSQNGEAEKALAMF----------FQMLDAG------------------- 291
           V   +AMI+ +++ G   +A A+F          F  + AG                   
Sbjct: 247 VFLVSAMIDMYAKKGALVEAAALFRSVQEPNVVMFNTMIAGFCRTETVIGKEVASEALTL 306

Query: 292 --------VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
                   ++  +FT  S L AC   G LE G ++H  +    F     IG+AL+D+Y  
Sbjct: 307 YSEVQSRGMQPTEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFN 366

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            G +E     F  + + D++TWTAM+ G   +  +E+A+  F + + +G +PD     ++
Sbjct: 367 SGCMEDGFRCFRSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSV 426

Query: 404 LTAC 407
           + AC
Sbjct: 427 MNAC 430



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 87/178 (48%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+  + R G    A  L ++MP +  VS+  +I+ +S+ G A  +L    +   AGV  
Sbjct: 48  TLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLARARRAGVDV 107

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + F+  +AL+AC++ G L AG  VH     +       +  +LV MY+KCG +  A  VF
Sbjct: 108 DRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGEMGEARRVF 167

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
              +E+D ++W +++ G    G  E+ ++ F  M   G   +     +++  C   G 
Sbjct: 168 DVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKCCSGRGD 225



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 66/298 (22%), Positives = 132/298 (44%), Gaps = 51/298 (17%)

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING---------------- 208
           F+R  L   Y +LG    A ++ DE P +N     + +N+LI+                 
Sbjct: 44  FLRNTLLAAYCRLGGPLPARRLLDEMPRRN----AVSFNLLIDAYSREGLAPLSLETLAR 99

Query: 209 -------------------CSKIGYLR--KAVELFGMMPKKNVASWVS--LIDGFMRKGD 245
                              CS+ G+LR  +AV    ++   +   +VS  L+  + + G+
Sbjct: 100 ARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCGE 159

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           + +A  +F+   E+  VSW ++++G+ + G  E+ + +F  M   G+  N F + S +  
Sbjct: 160 MGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIKC 219

Query: 306 CAKV--GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           C+    G ++    VH  +          + +A++DMYAK G +  A+ +F   +E +++
Sbjct: 220 CSGRGDGTMDIAEAVHGCVIKAGLDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPNVV 279

Query: 364 TWTAMIWGLA----IHGR--YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
            +  MI G      + G+    +A+  + ++   G +P    F ++L AC  +G ++ 
Sbjct: 280 MFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 81/396 (20%), Positives = 151/396 (38%), Gaps = 39/396 (9%)

Query: 30  TETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           TE    S++ + N    L   +QIH Q+I +       I + LI        ++     F
Sbjct: 318 TEFTFSSVLRACNLAGYLEFGKQIHGQVIKYTFQEDDFIGSALIDLYFNSGCMEDGFRCF 377

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                 ++  +  ++ G  +N   +  +S F   L   ++P+  T   V  + ASL++  
Sbjct: 378 RSSPKHDIVTWTAMVSGCVQNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVAR 437

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G  + C   KSG +    +      MY + G    A + F E     +S  V+ W+ +I
Sbjct: 438 AGEQIQCFATKSGFDRFTVMGNSCVHMYARSGDVDAATRRFQEM----ESHDVVSWSAVI 493

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           +  ++ G  R A+  F  M    V     +++ ++      G + +    +E M +   +
Sbjct: 494 SCHAQHGCARDALHFFDEMVDAKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGL 553

Query: 263 S-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           S      T +++   + G    A A     +     A+     S L++C     LE G  
Sbjct: 554 SPTIKHCTCVVDLLGRAGRLADAEAFISNSI---FHADPVIWRSLLASCRIHRDLERGQL 610

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL-----LTWTAMIWGL 372
           V N I   +     A    L +MY   G +  AS      K++ +     L+W  +  G+
Sbjct: 611 VANRIMELE-PTSSASYVILYNMYLDAGELSLASKTRDLMKQRGVKKEPGLSWIELKCGV 669

Query: 373 --------------AIHGRYEQAIQYFKKMMYSGTE 394
                         AI+ + E+ +   +K+  + TE
Sbjct: 670 HSFVAGDKSHPESSAIYTKLEEMLSRIEKLATTDTE 705


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 196/637 (30%), Positives = 319/637 (50%), Gaps = 77/637 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   L+   S +  +D A  +F     K++  +N +I G  +N +    +     M    
Sbjct: 158 VAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG 217

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           V+ + +T   +    A    +  G  +H  ++K G++ D FV   L +MY + G+ + A 
Sbjct: 218 VKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQ 277

Query: 185 KVFDETPEKNKSESVLLWNVLI------NGCSKIGYLRKAVELFGMMPK----------- 227
            VFD+   ++    ++ WN +I      N  S      K ++L G+ P            
Sbjct: 278 MVFDQMEVRD----LVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIF 333

Query: 228 -----------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                  K+V    +L++ + + G +  A  +F+Q+P K  +SW
Sbjct: 334 SQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISW 393

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
             ++ G++QNG A +A+  +  M +      N  T VS + A + VGAL+ G+++H  + 
Sbjct: 394 NTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLI 453

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            N   L   + T L+D+Y KCG +E A  +F E      + W A+I  L IHGR E+A+Q
Sbjct: 454 KNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQ 513

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
            FK M+    + D   F+++L+AC +SG V      FD M+ +Y I+PS+KH+  +V+LL
Sbjct: 514 LFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLL 573

Query: 444 SRVGQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYV 475
            R G   + Y+  +N                            +  +LL++  ++   YV
Sbjct: 574 GRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYV 633

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
           LLSNIYA   +W+ V +VR+L + R ++K PGWS + V      F  G   H    EI+ 
Sbjct: 634 LLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAEVFYTGNQTHPKYTEIYK 693

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVK 592
           +L+ + A  +  GY+P   +V  +I+E EKE+ L  HSE+LA+AFG+I T P + I+I K
Sbjct: 694 ELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAIAFGIISTPPRSPIRIFK 753

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
            L +CGDCH+  KY S+IS+REIV+RD+ RFH+FKDG
Sbjct: 754 NLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 203/463 (43%), Gaps = 63/463 (13%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           +L +S  +    +++HA +++     +  ++T+LI+    H  I  + S FD+   KN+ 
Sbjct: 27  ALFNSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIF 86

Query: 96  IFNVLIRGLAENSHFQ---SCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGL 151
            +N +I        +    +C++    M     +RP+  T+P + K+  SL     G+ +
Sbjct: 87  SWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKV 143

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HC + K G E D FV   L  +Y + G    A KVF + P K+       WN +I+G  +
Sbjct: 144 HCCVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGS----WNAMISGFCQ 199

Query: 212 IGYLRKAVELFGMMPKK-------NVASWV------------------------------ 234
            G    A+ +   M  +        VAS +                              
Sbjct: 200 NGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFV 259

Query: 235 --SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
             +LI+ + + G L+ A  +F+QM  + +VSW ++I  + QN +   AL  F  M   G+
Sbjct: 260 SNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGI 319

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAAS 351
           R +  TVVS  S  +++        +  ++   ++  K   IG ALV+MYAK G +  A 
Sbjct: 320 RPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAH 379

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYS 410
            VF +   KD ++W  ++ G   +G   +AI  +  M     T P+   +++I+ A  + 
Sbjct: 380 TVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHV 439

Query: 411 GQVKLALNFF-----DSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           G ++  +        +S+  D F+       T +++L  + G+
Sbjct: 440 GALQQGMKIHAKLIKNSLYLDVFVA------TCLIDLYGKCGR 476



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 174/397 (43%), Gaps = 49/397 (12%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + IT   I+ +   S+       IH  ++ H L +   ++  LI+  S    +  A  +F
Sbjct: 221 DTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    ++L  +N +I    +N+   + +  F  M    +RP+ LT   ++   + LS   
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQR 340

Query: 147 LGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           + R +   +++   ++ D  +   L +MY +LG    A  VFD+ P K+     + WN L
Sbjct: 341 ISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKD----TISWNTL 396

Query: 206 INGCSKIGYLRKAVELFGMMPK-----KNVASWVS------------------------- 235
           + G ++ G   +A++ + MM +      N  +WVS                         
Sbjct: 397 VTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAKLIKNS 456

Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                     LID + + G L+ A  LF ++P    V W A+I     +G  E+AL +F 
Sbjct: 457 LYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFK 516

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAK 343
            ML   V+A+  T VS LSAC+  G ++ G +  + +   ++G+K ++     +VD+  +
Sbjct: 517 DMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQ-KEYGIKPSLKHYGCMVDLLGR 575

Query: 344 CGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            G +E A  LV     + D   W A++    I+G  E
Sbjct: 576 AGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAE 612



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 106/430 (24%), Positives = 184/430 (42%), Gaps = 59/430 (13%)

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + LH L++  G   +  +   L ++YV  G    +   FD   +KN    +  WN +I+ 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKN----IFSWNSIISA 94

Query: 209 CSKIGYLRKAV----ELFGMMPKKNV-----------ASWVSLIDG-------------- 239
             + G   +A+    +LF M    ++            + VSL+DG              
Sbjct: 95  YVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFKMGFED 154

Query: 240 -----------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                      + R G L  A ++F  MP K V SW AMI+GF QNG A  AL +  +M 
Sbjct: 155 DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMK 214

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             GV+ +  TV S L  CA+   +  GV +H ++  +       +  AL++MY+K G ++
Sbjct: 215 GEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQ 274

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A +VF + + +DL++W ++I     +     A+++FK M   G  PD    +++ +   
Sbjct: 275 DAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFS 334

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
                +++ +    +    +++  V     +VN+ +++     GY N  +  T   QL  
Sbjct: 335 QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKL-----GYMNCAH--TVFDQLPR 387

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQ--RRSIKKDPGW-SYIEVNGHVHRFEAGGH 525
           K   S+  L   Y   G   +      +M+  R +I     W S I    HV   + G  
Sbjct: 388 KDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQG-- 445

Query: 526 KLAKEIHSKL 535
               +IH+KL
Sbjct: 446 ---MKIHAKL 452


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 196/598 (32%), Positives = 316/598 (52%), Gaps = 44/598 (7%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+ YA  +FD    +++  +N +I     N   +  I  +  M+   + P+  T+  V K
Sbjct: 126 SVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFK 185

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           + + L L+  G+  H   V  GV   + FV   L DMY + GK R A  V D+   K+  
Sbjct: 186 AFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKD-- 243

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLIDGFMRKGDLKK--AGELF 253
             V+L+  LI G S  G   +++++F  M KK + A+  +L    +  G+L+   +G L 
Sbjct: 244 --VVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLI 301

Query: 254 EQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             +  K      V+WT++I G  QNG  E AL  F QML + +  N FT+ S L AC+ +
Sbjct: 302 HGLIVKAGLESAVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSL 361

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
             LE G ++H  +      +   +G AL+D Y KCG+ E A  VF    E D+++  +MI
Sbjct: 362 AMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMI 421

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
           +  A +G   +A+Q F  M  +G EP+   +L +L+AC  +G ++   + F S R    I
Sbjct: 422 YSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNI 481

Query: 430 EPSVKHHTVVVNLLSRVGQDSQG---------------------------YQNSQNSFTK 462
           E +  H+  +V+LL R G+  +                             + ++    +
Sbjct: 482 ELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEMAKRVMNR 541

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           ++ L P+   ++VLLSN+YA+ G W  V  +++ M+   +KK+P  S+++V   +H F A
Sbjct: 542 VIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTFMA 601

Query: 523 G--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKE-EALGCHSEKLALAFGL 579
           G   H   ++I  KLE+++   +E GY+P T +VL ++ EEK+  +L  HSEKLA+AF L
Sbjct: 602 GDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAFAL 661

Query: 580 IQTT-PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
            ++    TTI+I+K L +CGDCH+ MK+ SKI  R+I+ RD  RFH+F++G CSC DY
Sbjct: 662 WRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDY 719



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 116/215 (53%), Gaps = 3/215 (1%)

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS--LIDGFMRKGDLKKAGELF 253
           SES+ L++ LI  C  I  +    ++     K+     +   LID +++ G +  A ++F
Sbjct: 75  SESLQLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSLGNKLIDAYLKCGSVVYARKVF 134

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           +++P + +V+W +MI  + +NG +++A+ ++ +M+  G+  ++FT  S   A + +G + 
Sbjct: 135 DEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVH 194

Query: 314 AGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
            G R H        G+    +G+ALVDMYAK G +  A LV  +   KD++ +TA+I G 
Sbjct: 195 EGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGY 254

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + HG   +++Q F+ M   G E +     ++L  C
Sbjct: 255 SHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCC 289



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 121/278 (43%), Gaps = 76/278 (27%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------G 223
           L D Y++ G    A KVFDE P ++    ++ WN +I    + G  ++A++++      G
Sbjct: 117 LIDAYLKCGSVVYARKVFDEVPHRH----IVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172

Query: 224 MMPKK----------------------------------NVASWVSLIDGFMRKGDLKKA 249
           ++P +                                  NV    +L+D + + G ++ A
Sbjct: 173 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA 232

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             + +Q+  K VV +TA+I G+S +GE  ++L +F  M   G+ AN++T+ S L  C  +
Sbjct: 233 RLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNL 292

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
             L +G  +H  I     GL+ A+                              TWT++I
Sbjct: 293 EDLTSGRLIHGLIV--KAGLESAV------------------------------TWTSVI 320

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            GL  +GR E A+  F++M+ S   P+     ++L AC
Sbjct: 321 VGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRAC 358



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 4/191 (2%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++SS  P N+ T + ++    S    +Q +QIHA ++   L     +   LI       S
Sbjct: 340 LRSSITP-NSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGS 398

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
            + A S+F+     ++   N +I   A+N      +  F  M    + PN +T+  V  +
Sbjct: 399 TEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSA 458

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
             +  LL    G H              + H A M   LG+  G  K  +    +     
Sbjct: 459 CNNAGLLE--EGCHIFSSARNSGNIELTKDHYACMVDLLGRA-GRLKEAEMLINQVNISD 515

Query: 199 VLLWNVLINGC 209
           V++W  L++ C
Sbjct: 516 VVIWRTLLSAC 526


>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
 gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 581

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 167/439 (38%), Positives = 262/439 (59%), Gaps = 43/439 (9%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + + GDL  A +LF++MP + V SW A+I G      A +A+ ++ +M   G+R 
Sbjct: 149 TLLDAYSKNGDLISAYKLFDEMPVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRR 208

Query: 295 NDFTVVSALSACAKVGALEAGVRV-HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           ++ TVV+AL AC+ +G ++ G  + H Y + N       +  A +DMY+KCG ++ A  V
Sbjct: 209 SEVTVVAALGACSHLGDVKEGENIFHGYSNDNVI-----VSNAAIDMYSKCGFVDKAYQV 263

Query: 354 FGE-TKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           F + T +K ++TW  MI G A+HG   +A++ F K+  +G +PD   +LA LTAC ++G 
Sbjct: 264 FEQFTGKKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGL 323

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------- 453
           V+  L+ F++M     +E ++KH+  VV+LLSR G+  + +                   
Sbjct: 324 VEYGLSVFNNMACK-GVERNMKHYGCVVDLLSRAGRLREAHDIICSMSMIPDPVLWQSLL 382

Query: 454 ---------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    + ++ +  ++ ++   +   +VLLSN+YAA+GRWKDV RVR  M+ + +KK
Sbjct: 383 GASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKK 442

Query: 505 DPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEE 561
            PG SYIE  G +H F      H+  +EI+ K+++I    RE GY+  T  VLH+I +EE
Sbjct: 443 IPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEE 502

Query: 562 KEEALGCHSEKLALAFGLIQTTPG---TTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           KE AL  HSEKLA+A+GL+        + ++++  L ICGDCH + K+ SKI +REI++R
Sbjct: 503 KENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVR 562

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D  RFH FKDG+CSCRD+W
Sbjct: 563 DRVRFHRFKDGSCSCRDFW 581



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 192/419 (45%), Gaps = 51/419 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIF 86
           +   ++ ++I    S  Q++Q+ +  +    F SS + ++L+   ++     + +A+ IF
Sbjct: 1   MARVYMETMIQKCVSFSQIKQLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVQIF 60

Query: 87  DHFTPKNL-HIFNVLIRGLAENSHFQSCISHFVFMLRLS------VRPNRLTYPFVSKSV 139
             + PK L + +N +IRG A +SH     S +  ML+ S       R + LT  F  K+ 
Sbjct: 61  -RYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDALTCSFTLKAC 119

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A     S    LHC I + G+  D+ +   L D Y + G    A+K+FDE P ++    V
Sbjct: 120 ARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEMPVRD----V 175

Query: 200 LLWNVLING-----------------------------------CSKIGYLRKAVELFGM 224
             WN LI G                                   CS +G +++   +F  
Sbjct: 176 ASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGENIFHG 235

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAM 283
               NV    + ID + + G + KA ++FEQ   +K VV+W  MI GF+ +GEA +AL +
Sbjct: 236 YSNDNVIVSNAAIDMYSKCGFVDKAYQVFEQFTGKKSVVTWNTMITGFAVHGEAHRALEI 295

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           F ++ D G++ +D + ++AL+AC   G +E G+ V N ++C            +VD+ ++
Sbjct: 296 FDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLSVFNNMACKGVERNMKHYGCVVDLLSR 355

Query: 344 CGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            G + EA  ++   +   D + W +++    I+   E A    +++   G   DG   L
Sbjct: 356 AGRLREAHDIICSMSMIPDPVLWQSLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVL 414



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 97/217 (44%), Gaps = 11/217 (5%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD------AGVRANDF 297
           GDL  A ++F  +P+     W A+I GF+ +     A + +  ML       A  R +  
Sbjct: 51  GDLSFAVQIFRYIPKPLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQQSSSSSAICRVDAL 110

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T    L ACA+     A  ++H  I+         + T L+D Y+K G++ +A  +F E 
Sbjct: 111 TCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLFDEM 170

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
             +D+ +W A+I GL    R  +A++ +K+M   G        +A L AC + G VK   
Sbjct: 171 PVRDVASWNALIAGLVSGNRASEAMELYKRMETEGIRRSEVTVVAALGACSHLGDVKEGE 230

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454
           N F     D  I  +       +++ S+ G   + YQ
Sbjct: 231 NIFHGYSNDNVIVSN-----AAIDMYSKCGFVDKAYQ 262


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 207/678 (30%), Positives = 340/678 (50%), Gaps = 86/678 (12%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           I S   +  +  IH +I    L +S+ +   L+   + H S+  A SIFD    KN+  +
Sbjct: 51  IRSCKDSNSVSIIHQKITRAGLGSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHKNIFSW 110

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N++I   A   H  + +  F    ++ V P  +T+     + +SL  L  GR +H  I  
Sbjct: 111 NIIISAYAHRGHPSTALHLFA---KMDVPPTAMTFATALSACSSLGDLQRGREIHARIKA 167

Query: 158 S-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           S G+     +   +  MY + G    A  VFD  P KN    V+ WN LI   ++ G+  
Sbjct: 168 SRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKN----VVSWNALIAAYAQSGHSH 223

Query: 217 -KAVELFGMMPKKNV----ASWV-----------------------------------SL 236
            +A++LF  M +  V    A++V                                   +L
Sbjct: 224 HQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQFDVRDVGVQNAL 283

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           ++ + + G L+ A ++F +M  +  VS   MI  F+Q G  ++++ +F +M   G+  +D
Sbjct: 284 LNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQDD 343

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-----IGTALVDMYAKCGNIEAAS 351
            T  S ++AC+  GALE G R+H  +     G K       + TALV MY KCG +E A 
Sbjct: 344 TTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQAK 403

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF     K+ ++W AM+   A  G+ ++A  + +     G E D   F+++L AC +SG
Sbjct: 404 AVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHSG 463

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DS------------------- 450
            +++A + F  M  D+ + P+ +++  +V+LL+R G+  D+                   
Sbjct: 464 MLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRTL 523

Query: 451 ------QG-YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                 QG  +N+ ++  +   L+P++ + Y LLS++Y+A G+  ++  +R+ M+ R ++
Sbjct: 524 LGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGLR 583

Query: 504 K-DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK- 559
           K  PG S IEV+G VH F AG   H    +I  +L+ +    ++ G++P T+ V+H++K 
Sbjct: 584 KLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLKT 643

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E+KEE L  HSEKLA+AFGLI T  G  + ++K L +C DCH  +K  SK+  R I +RD
Sbjct: 644 EDKEEILALHSEKLAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVRD 703

Query: 620 T-RFHYFKDGTCSCRDYW 636
             RFH F+ GTCSC DYW
Sbjct: 704 ANRFHRFQSGTCSCGDYW 721


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  308 bits (788), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 190/614 (30%), Positives = 312/614 (50%), Gaps = 60/614 (9%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A  +FD    ++L  +N ++ G   +    S +  F  MLRL  + +R        +
Sbjct: 175 IELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGA 234

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            +    L  G  +HC +++S +E D  V+  L DMY + GK   A +VF+    KN    
Sbjct: 235 CSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKN---- 290

Query: 199 VLLWNVLING--------------------CSKIGYLRKAVELFGMMPKKNVASWV---- 234
           ++ WN +I G                    CS+ G L +   + G   +K    ++    
Sbjct: 291 IVAWNAMIGGMQEDDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLET 350

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + + G+LK A  +F QM EK +VSW  M+  + QN + ++AL MF  +L+  ++ 
Sbjct: 351 ALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKP 410

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +  T+ S L A A++ +   G ++H+YI     G    I  A+V MYAKCG+++ A   F
Sbjct: 411 DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFF 470

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                KD+++W  MI   AIHG    +IQ+F +M   G +P+G+ F+++LTAC  SG + 
Sbjct: 471 DGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLID 530

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------YQN 455
               FF+SM+ +Y I+P ++H+  +++LL R G   +                       
Sbjct: 531 EGWGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAA 590

Query: 456 SQN---------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
           S+N         +   +L LK  +   YVLLSN+YA  GRW+DV R++ LM+ + + K  
Sbjct: 591 SRNHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTV 650

Query: 507 GWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPG-TEWVLHNIKEEKE 563
           G S +++NG    F  +   H     I+  L+ ++    E  Y+   T++   ++ +++ 
Sbjct: 651 GCSMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRG 710

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-F 622
            +   HS KLA+ FGLI T  G  + + K   IC DCH   K  S++++REIV+ D + F
Sbjct: 711 NSPEYHSVKLAICFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVF 770

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DG CSCRDYW
Sbjct: 771 HHFRDGCCSCRDYW 784



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 169/364 (46%), Gaps = 58/364 (15%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           AL +F+     +  I+NV+IRG   N  FQ  I  +  M    +R +  T+PFV K+   
Sbjct: 77  ALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGE 136

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  L +G+ +H  ++K G + D +V   L DMY+++G    A KVFDE P ++    ++ 
Sbjct: 137 LLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRD----LVS 192

Query: 202 WNVLING-----------------------------------CSKIGYLRKAVELFGMMP 226
           WN +++G                                   CS    LR  +E+   + 
Sbjct: 193 WNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVI 252

Query: 227 KK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           +     ++    SLID + + G +  A  +F ++  K +V+W AMI G  +         
Sbjct: 253 RSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE--------- 303

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
                 D  V  +  T+++ L +C++ GAL  G  +H +     F     + TALVDMY 
Sbjct: 304 ------DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYG 357

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG ++ A  VF +  EK++++W  M+     + +Y++A++ F+ ++    +PD     +
Sbjct: 358 KCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIAS 417

Query: 403 ILTA 406
           +L A
Sbjct: 418 VLPA 421



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 91/169 (53%)

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           GF+  G +  A ++FE+M       W  +I G++ NG  ++A+  +++M   G+R+++FT
Sbjct: 67  GFVESGLMGNALDMFEKMNHSDTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFT 126

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
               + AC ++ AL  G +VH  +    F L   +   L+DMY K G IE A  VF E  
Sbjct: 127 FPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMP 186

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +DL++W +M+ G  I G    ++  FK+M+  G + D    ++ L AC
Sbjct: 187 VRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGAC 235


>gi|2244842|emb|CAB10264.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268231|emb|CAB78527.1| hypothetical protein [Arabidopsis thaliana]
          Length = 587

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 206/608 (33%), Positives = 296/608 (48%), Gaps = 97/608 (15%)

Query: 89  FTP-KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
            TP +N+  +  LI GLA+N HF + +  F  M R              ++VASL L   
Sbjct: 17  LTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR--------------EAVASLRLPVT 62

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ +H L VK G   D FV     DMY +      A K+FDE PE+N    +  WN  I+
Sbjct: 63  GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERN----LETWNAFIS 118

Query: 208 GCSKIGYLRKAVELFGMMPKKN--------------VASWVSLIDGFMRKGDLKKAG--- 250
                G  R+A+E F    + +               + W+ L  G    G + ++G   
Sbjct: 119 NSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDT 178

Query: 251 --------ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
                    +F +M  K  VSW +++  + QN E EKA  ++ +     V  +DF + S 
Sbjct: 179 DVSIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSV 238

Query: 303 LSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           LSACA +  LE G  +H +   +C +  +   +G+ALVDMY KCG IE +   F E  EK
Sbjct: 239 LSACAGMAGLELGRSIHAHAVKACVERTI--FVGSALVDMYGKCGCIEDSEQAFDEMPEK 296

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           +L+T  ++I G A  G+ + A+  F++M   G                  G V+  +  F
Sbjct: 297 NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGC-----------------GAVENGMKIF 339

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------QNSQNSFTK 462
           DSMR  Y IEP  +H++ +V++L R G   + Y                  QN+     K
Sbjct: 340 DSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGK 399

Query: 463 ----------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     L +L PK   ++VLLSN +AA GRW +   VR  ++   IKK  G+S+I 
Sbjct: 400 PQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWIT 459

Query: 513 VNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCH 569
           V   VH F+A    H L KEI + L  +       GY P  +  L++++EE++ A +  H
Sbjct: 460 VKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHH 519

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SEKLALAFGL+       I+I K L ICGDCHS  K+ S   +REI++RD  RFH FKDG
Sbjct: 520 SEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDG 579

Query: 629 TCSCRDYW 636
            CSC+DYW
Sbjct: 580 ICSCKDYW 587



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 54/260 (20%), Positives = 106/260 (40%), Gaps = 43/260 (16%)

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS 232
           MY +L     A  V   TP +N    V+ W  LI+G ++ G+   A+  F  M ++ VAS
Sbjct: 1   MYSKLDHPESARLVLRLTPARN----VVSWTSLISGLAQNGHFSTALVEFFEMRREAVAS 56

Query: 233 W-------------------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
                                      S  D + +      A +LF+++PE+ + +W A 
Sbjct: 57  LRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAF 116

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I+    +G   +A+  F +        N  T  + L+AC+    L  G+++H  +     
Sbjct: 117 ISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLV----- 171

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
            L+    T +        +I ++ ++F E   K+ ++W +++     +   E+A   + +
Sbjct: 172 -LRSGFDTDV--------SIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLR 222

Query: 388 MMYSGTEPDGTVFLAILTAC 407
                 E    +  ++L+AC
Sbjct: 223 SRKDIVETSDFMISSVLSAC 242


>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
 gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
          Length = 596

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 180/467 (38%), Positives = 266/467 (56%), Gaps = 59/467 (12%)

Query: 219 VELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           ++L  ++ +  VA+ V    +L+D + + GDL  A  +F++M  + V +W A++ G +Q 
Sbjct: 140 LQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVFDEMSVRDVATWNALLAGLAQG 199

Query: 275 GEAEKALAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            E   AL +F      F+ L      N+ TVV+ALSACA++GAL+ G+  H++       
Sbjct: 200 TEPNLALVLFRRLAGSFRELPPREEPNEVTVVAALSACAQLGALKDGLAAHDFART---- 255

Query: 329 LKGAIGT-----ALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQA 381
             GA+G      AL+DMY+KCG++  A  VF   K +D  L+++ A I  L++HG  E A
Sbjct: 256 -IGAVGNVRVCNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSMHGHGEDA 314

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           ++ F +M  +  EPD   +LA+L  C ++G V      FDSMR    + P++KH+  +V+
Sbjct: 315 LKLFDEMP-ARIEPDEVTYLAVLGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVD 369

Query: 442 LLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHPSS 473
           LL R G+ ++ +                              ++ + TKL  L       
Sbjct: 370 LLGRAGRLAEAHDMIMHMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGD 429

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEI 531
           YVLLSN+YA++ RW DV RVR  M+   +KK PG+SY E++G +H+F  G   H   +EI
Sbjct: 430 YVLLSNVYASKSRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHLRWREI 489

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
           +  L++I +   E GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG TI++
Sbjct: 490 YRALDEIGSKICELGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRV 549

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +K L ICGDCH + K  SK   R I++RD  RFH F+DG CSCRDYW
Sbjct: 550 IKNLRICGDCHVVAKLISKAYGRVIIIRDRARFHQFEDGQCSCRDYW 596


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 184/535 (34%), Positives = 285/535 (53%), Gaps = 74/535 (13%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L +MYV+      A ++FD+ P++N    V+ W  +I+  SK    +KA+EL  +M + N
Sbjct: 102 LINMYVKFNLLNDAHQLFDQMPQRN----VISWTTMISAYSKCKIHQKALELLVLMLRDN 157

Query: 230 VASWV------------------------------------SLIDGFMRKGDLKKAGELF 253
           V   V                                    +LID F + G+ + A  +F
Sbjct: 158 VRPNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVF 217

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           ++M     + W ++I GF+QN  ++ AL +F +M  AG  A   T+ S L AC  +  LE
Sbjct: 218 DEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLE 277

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G++ H +I   D  L   +  ALVDMY KCG++E A  VF + KE+D++TW+ MI GLA
Sbjct: 278 LGMQAHVHIVKYDQDL--ILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLA 335

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            +G  ++A++ F++M  SGT+P+    + +L AC ++G ++    +F SM+  Y I+P  
Sbjct: 336 QNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVR 395

Query: 434 KHHTVVVNLLSRVGQ---------------DSQGYQN-------------SQNSFTKLLQ 465
           +H+  +++LL + G+               D+  ++              ++ +  K++ 
Sbjct: 396 EHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIA 455

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L P+   +Y LLSNIYA   +W  V  +RT M+ R IKK+PG S+IEVN  +H F  G  
Sbjct: 456 LDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDN 515

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQT 582
            H    E+  KL  ++      GY+P T +VL +++ E+ E++L  HSEKLALAFGL+  
Sbjct: 516 SHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTL 575

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR-DTRFHYFKDGTCSCRDYW 636
                I+I K L ICGDCH   K ASK+  R IV+R   R+H+F+DG CSC DYW
Sbjct: 576 PIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 166/363 (45%), Gaps = 48/363 (13%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A  +FD    +N+  +  +I   ++    Q  +   V MLR +VRPN  TY  V +S
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
              +S +   R LHC I+K G+E D FVR  L D++ +LG+   A  VFDE      +  
Sbjct: 172 CNGMSDV---RMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMV----TGD 224

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------------------------------GMMPKK 228
            ++WN +I G ++      A+ELF                              GM    
Sbjct: 225 AIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHV 284

Query: 229 NVASWV-------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
           ++  +        +L+D + + G L+ A  +F QM E+ V++W+ MI+G +QNG +++AL
Sbjct: 285 HIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
            +F +M  +G + N  T+V  L AC+  G LE G      +    +G+         ++D
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMK-KLYGIDPVREHYGCMID 403

Query: 340 MYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           +  K G ++ A  +  E + E D +TW  ++    +      A    KK++    E  GT
Sbjct: 404 LLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGT 463

Query: 399 VFL 401
             L
Sbjct: 464 YTL 466



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 119/261 (45%), Gaps = 15/261 (5%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++ S N    +R +H  II   L +   + + LI   +     + ALS+FD     +  
Sbjct: 167 SVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N +I G A+NS     +  F  M R      + T   V ++   L+LL LG   H  I
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           VK   + D  +   L DMY + G    A +VF++  E++    V+ W+ +I+G ++ GY 
Sbjct: 287 VK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERD----VITWSTMISGLAQNGYS 340

Query: 216 RKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTA 266
           ++A++LF  M     K N  + V ++      G L+     F  M +   +      +  
Sbjct: 341 QEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGC 400

Query: 267 MINGFSQNGEAEKALAMFFQM 287
           MI+   + G+ + A+ +  +M
Sbjct: 401 MIDLLGKAGKLDDAVKLLNEM 421


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 197/616 (31%), Positives = 316/616 (51%), Gaps = 85/616 (13%)

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LI+ L +  +    +     +L     P + TY  +  S    + L  G  LH  ++ 
Sbjct: 51  NPLIQSLCKQGNLNQALQ----VLSQEPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
            G + D F+   L +MY +L     A KVFD+T    +  ++ +WN L    +  GY R+
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKT----RKRTIYVWNALFRALTLAGYGRE 162

Query: 218 AVELFGMMPKKNVAS-------------------------------------------WV 234
            ++L+  M +  V S                                             
Sbjct: 163 VLDLYRRMNRIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGHVHIMT 222

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGV 292
           +L+D + R G +  A  +F+QMP K VVSW+AMI  +S+NG+  +AL +F +M+  +  +
Sbjct: 223 TLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDL 282

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             N  T+VS L ACA + ALE G  +H YI          + +ALV +YA+CGN+E    
Sbjct: 283 LPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHR 342

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF   +++D+++W ++I    IHG   +AIQ FK+M+  G  P    F+++L AC ++G 
Sbjct: 343 VFERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGL 402

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-------------------- 452
           V+     F+SM   + I PSV+H+  +V+LL R  +  +                     
Sbjct: 403 VEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLL 462

Query: 453 --------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                    + ++ + ++L +L+P +  +YVLL++IYA    W +V RV+ L++ R ++K
Sbjct: 463 GSCRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQK 522

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEE 561
            PG S IE+   ++ F +    +   +++H+ L  +    +E+GY+P T+ VL+++  EE
Sbjct: 523 VPGRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEE 582

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           KE  +  HSEKLALAFGLI +  G TI+I K L +C DCHS+ K+ SK + REI++RD  
Sbjct: 583 KERIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVN 642

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH F+DG CSC DYW
Sbjct: 643 RFHLFQDGVCSCGDYW 658


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 164/435 (37%), Positives = 247/435 (56%), Gaps = 33/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI+ +    D+  A  +F+++ E  VVS+ A+I G++++    +AL++F Q+    ++ 
Sbjct: 167 TLINMYAGCNDVDGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKP 226

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           ND TV+S LS+CA +GAL+ G  +H Y+  N       + TAL+DMYAKCG+++ A  VF
Sbjct: 227 NDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVF 286

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                +D   W+AMI   A+HG+ +  +  F++M  +  +PD   FL +L AC ++G V 
Sbjct: 287 ESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVD 346

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------------------- 453
               +F SM   Y I P +KH+  +V+LL R G   + Y                     
Sbjct: 347 EGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSS 406

Query: 454 -------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                  + ++    ++L+L   H   YV+LSN+ A  G+W+DV  +R LM  +   K P
Sbjct: 407 CSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIP 466

Query: 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEK 562
           G S IEV+  VH F +G   H ++  +H  L++++   +  GY+P T  V+H     EEK
Sbjct: 467 GCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEK 526

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           E  L  HSEKLA++FGL+ T PGTTI++VK L +CGDCHS  K  S +  REI+LRD  R
Sbjct: 527 EITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRDVQR 586

Query: 622 FHYFKDGTCSCRDYW 636
           FH+FKDG CSC DYW
Sbjct: 587 FHHFKDGKCSCGDYW 601



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 103/427 (24%), Positives = 187/427 (43%), Gaps = 52/427 (12%)

Query: 10  TTAIAPTTNIKSSHKPS--NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT 67
           T    P      S   S  N    + ++S +    S K+L+QI A  I  +L    +I T
Sbjct: 3   TAPFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILT 62

Query: 68  QLISSASLHK---SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +LI+S + +    S+DYA  +F+     ++ +FN + RG + ++     IS F+  L  +
Sbjct: 63  KLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYN 122

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + P+  T+P + K+         G+ LHCL +K G+  + +V   L +MY       GA 
Sbjct: 123 LLPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQ 182

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK---------------- 228
           +VFDE  E      V+ +N +I G ++     +A+ LF  +  +                
Sbjct: 183 RVFDEILEP----CVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSC 238

Query: 229 ------NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                 ++  W+                 +LID + + G L  A  +FE M  +   +W+
Sbjct: 239 ALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWS 298

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI  ++ +G+ +  ++MF +M  A V+ ++ T +  L AC+  G ++ G R + Y    
Sbjct: 299 AMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFR-YFYSMSE 357

Query: 326 DFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGLAIHGRYEQAI 382
            +G+   I     +VD+  + G +  A     E   K   + W  ++   + HG  E A 
Sbjct: 358 VYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAK 417

Query: 383 QYFKKMM 389
           Q   +++
Sbjct: 418 QVMNQIL 424



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/257 (22%), Positives = 126/257 (49%), Gaps = 8/257 (3%)

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A +LFE +P+  +V + +M  G+S++    KA+++F + L+  +  +D+T  S L AC  
Sbjct: 80  AHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKACVV 139

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
             A + G ++H             +   L++MYA C +++ A  VF E  E  ++++ A+
Sbjct: 140 AKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSYNAI 199

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G A   R  +A+  F+++     +P+    L++L++C   G + L     + ++ +  
Sbjct: 200 ITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKKN-G 258

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
           ++  VK +T ++++ ++ G       +   + +    +  +   ++  +   YA  G+ +
Sbjct: 259 LDKYVKVNTALIDMYAKCG-------SLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQ 311

Query: 489 DVARVRTLMQRRSIKKD 505
           DV  +   M R  ++ D
Sbjct: 312 DVMSMFEEMARAKVQPD 328



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 105/243 (43%), Gaps = 8/243 (3%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N++T   ++S      +    + IH  +  + L    ++ T LI   +   S+D A+
Sbjct: 225 KP-NDVTVLSVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAI 283

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           S+F+  + ++   ++ +I   A +   Q  +S F  M R  V+P+ +T+  +  + +   
Sbjct: 284 SVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTG 343

Query: 144 LLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           L+  G R  + +    G+         + D+  + G    A+K  DE P K    + +LW
Sbjct: 344 LVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIK---PTPILW 400

Query: 203 NVLINGCSKIGYLRKAVELFGM---MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
             L++ CS  G L  A ++      +   +   +V L +   R G  +    L + M  K
Sbjct: 401 RTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHK 460

Query: 260 GVV 262
           G V
Sbjct: 461 GAV 463


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/476 (36%), Positives = 269/476 (56%), Gaps = 43/476 (9%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMP 257
           +  L+  C+++  LR+   L     K  + + V    SL+  +   G  + A  +F+++P
Sbjct: 123 YPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIP 182

Query: 258 --EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
             E+ +VSW +++NGF+ NG   + L +F + L+A +  + FT+VS L+ACA++GAL  G
Sbjct: 183 VLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLG 242

Query: 316 VRVHNYISCNDFGLKGA--IGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGL 372
            RVH + S    GL G   +G AL+D+YAKCG +E A  VF E    + +++WT++I GL
Sbjct: 243 RRVHVFAS--KVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGL 300

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           A +G  + A++ F  M      P     + +L AC + G V     +F+ M+  Y I P 
Sbjct: 301 AGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPG 360

Query: 433 VKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLL 464
           ++H   +V+LL R G+  + +                            +  + ++ +L+
Sbjct: 361 IEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMHKKLELGEAAWARLV 420

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
           +L P H   YVLLSN+YAA GRW D   +R  M    ++K+PG S +E+   V+ F  G 
Sbjct: 421 ELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSLVELRNSVYEFVMGD 480

Query: 524 -GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQ 581
             H  + +I+  L +I    R QGY+P T  VL +I+EE KE AL  HSE+LA+AF L++
Sbjct: 481 RSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALNYHSERLAIAFALLK 540

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + PG+ I+IVK L +CGDCH ++K  SK+  REI++RD +RFH+FK G CSC+DYW
Sbjct: 541 SLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFKGGECSCKDYW 596



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 184/428 (42%), Gaps = 75/428 (17%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIH---SSNSTKQLRQIHAQ------IILHNL 59
           +  AIAP         PS +    H ++L+     S S    +QIHA+      + L + 
Sbjct: 1   MREAIAPA--------PSTHPALRHCVALLRLHLPSPSVAAAKQIHARALRAAGVPLSHP 52

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTP-KNLHIFNVLIRGLAENSHFQSCISHFV 118
             +  +   L S  +    + YA+++     P  +    N ++R  A ++H +  ++   
Sbjct: 53  LLAKHLLFHLASLRAGPPPLLYAVTVLSCLLPDPDPFSLNTVLRIAASSAHPRIALA--- 109

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
              R    P+  TYP + ++   L  L  G  LH    K+G+    FV+  L   Y   G
Sbjct: 110 LHRRRLAPPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACG 169

Query: 179 KTRGAFKVFDETP--EKNKSESVLLWNVLING---------------------------- 208
               A +VFDE P  E+N    ++ WN ++NG                            
Sbjct: 170 LFESAHRVFDEIPVLERN----LVSWNSVMNGFAANGRPNEVLTIFRETLEADLMPDGFT 225

Query: 209 -------CSKIGYLR--KAVELF----GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
                  C++IG L   + V +F    G++   +V +  +LID + + G ++ A ++FE+
Sbjct: 226 IVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGN--ALIDLYAKCGGVEDAWKVFEE 283

Query: 256 MP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           M   + VVSWT++I G + NG  + AL +F  M    +   D T+V  L AC+  G ++ 
Sbjct: 284 MGVARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDD 343

Query: 315 GVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWG 371
           G R  N +  + +G+   I     +VD+  + G +E A + +     E + + W  ++  
Sbjct: 344 GFRYFNEMQ-DKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGA 402

Query: 372 LAIHGRYE 379
            A+H + E
Sbjct: 403 CAMHKKLE 410



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 69/284 (24%), Positives = 121/284 (42%), Gaps = 17/284 (5%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVL 100
           + ++   +HA+   + L A   +   L+         + A  +FD      +NL  +N +
Sbjct: 135 ALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSV 194

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           + G A N      ++ F   L   + P+  T   V  + A +  L+LGR +H    K G+
Sbjct: 195 MNGFAANGRPNEVLTIFRETLEADLMPDGFTIVSVLTACAEIGALTLGRRVHVFASKVGL 254

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             ++ V   L D+Y + G    A+KVF+E      + +V+ W  LI G +  G+ + A+E
Sbjct: 255 VGNSHVGNALIDLYAKCGGVEDAWKVFEEM---GVARTVVSWTSLIVGLAGNGFGKDALE 311

Query: 221 LFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGF 271
           LFG+M ++ +     + V ++      G +      F +M +K     G+     M++  
Sbjct: 312 LFGLMERERLIPTDITMVGVLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLL 371

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
            + G  E+A      M    V  N     + L ACA    LE G
Sbjct: 372 GRAGRVEEAHNYITTM---PVEPNAVVWRTLLGACAMHKKLELG 412


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 192/637 (30%), Positives = 322/637 (50%), Gaps = 84/637 (13%)

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
           +S HK+I     +   F   + H+ N+ I     ++  +  + H        +  N   Y
Sbjct: 9   SSTHKAIFQKPRLLSTFPSNSHHVLNIHI----HDTRLREALLHMALR---GLDTNFQDY 61

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
             V         +  G+ +H  ++K+      ++R  L   YV+    R A  VFD  PE
Sbjct: 62  NTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPE 121

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELF--------------------------GMMP 226
           +N    V+ W  +I+  S+ GY  +A+ LF                          G + 
Sbjct: 122 RN----VVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVL 177

Query: 227 KKNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
            + + S +             SL+D + + G + +A  +F+ +PE+ VVS TA+I+G++Q
Sbjct: 178 GRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQ 237

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
            G  E+AL +F ++   G+++N  T  S L+A + + AL+ G +VHN++  ++      +
Sbjct: 238 LGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVVL 297

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSG 392
             +L+DMY+KCGN+  A  +F    E+ +++W AM+ G + HG   + ++ F  M+  + 
Sbjct: 298 QNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENK 357

Query: 393 TEPDGTVFLAILTACWYSGQVKLALN-FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
            +PD    LA+L+ C + G     ++ F+D       ++P  KH+  VV++L R G+   
Sbjct: 358 VKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEA 417

Query: 452 GYQNSQN--------------------------SFT--KLLQLKPKHPSSYVLLSNIYAA 483
            ++  +                            F   +LLQ++P++  +YV+LSN+YA+
Sbjct: 418 AFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPENAGNYVILSNLYAS 477

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAG 541
            GRW+DV  +R LM ++++ K+PG S+IE++  +H F A    H   +E+ +K++++ A 
Sbjct: 478 AGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASDCSHPRREEVSAKVQELSAR 537

Query: 542 AREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +E GY+P    VLH++ EE KE+ L  HSEKLAL FGLI T     I+++K L IC DC
Sbjct: 538 FKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIATPESVPIRVIKNLRICVDC 597

Query: 601 HSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           H+  KY SKI  RE+ LRD  RFH    G CSC DYW
Sbjct: 598 HNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 119/269 (44%), Gaps = 31/269 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++S  +P+     T + S I SS      RQIH+ II  N  A   + + L+   +    
Sbjct: 151 LRSGTEPNEFTFATVLTSCIGSSGFVLG-RQIHSHIIKLNYEAHVYVGSSLLDMYAKDGK 209

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  IF     +++     +I G A+    +  +  F  + R  ++ N +TY  V  +
Sbjct: 210 IHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTA 269

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           ++ L+ L  G+ +H  +++S V     ++  L DMY + G    A ++FD   E+    +
Sbjct: 270 LSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHER----T 325

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           V+ WN ++ G SK G  R+ +ELF +M  +N                           P+
Sbjct: 326 VISWNAMLVGYSKHGEGREVLELFNLMIDENKVK------------------------PD 361

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQM 287
              V+  A+++G S  G  +K + +F+ M
Sbjct: 362 S--VTVLAVLSGCSHGGLEDKGMDIFYDM 388


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 300/561 (53%), Gaps = 77/561 (13%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G   H  I++ G+  D      L +MY + G    A K+FDE P +    S++ WN ++ 
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVR----SLVSWNTMVG 121

Query: 208 GCSKIGYLRKAVELFGMMPKK--------------------------------------- 228
             ++ G   KA+ LF  M K+                                       
Sbjct: 122 SHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDS 181

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           NV    +L+D + + G +K A  +FE MPE+  V+W++M+ G+ QN   E+AL +F +  
Sbjct: 182 NVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQ 241

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNI 347
             G+  N FT+ SALSACA   AL  G +V   +SC    G    + ++L+DMYAKCG I
Sbjct: 242 AMGLEHNQFTISSALSACAARAALIEGKQVQA-VSCKTGIGSNIFVISSLIDMYAKCGII 300

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E A  VF   +EK+++ W A++ G + H R  +A+ YF+KM   G  P+   ++++L+AC
Sbjct: 301 EEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSAC 360

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------------- 447
            + G V+    +FD M   + + P+V H++ +V++L R G                    
Sbjct: 361 SHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASM 420

Query: 448 -----QDSQGYQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                   + Y+N   ++ +   L +++P +  ++VLLSNIYAA  RW++VAR R L++ 
Sbjct: 421 WGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKE 480

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
              KK+ G S+IE+   VH F  G   H    EI+ KLED++   ++ GY   TE  LH+
Sbjct: 481 SKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHD 540

Query: 558 IKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++E  K+E L  HSEKLAL FG++    G  I+I+K L ICGDCHS MK AS I++REI+
Sbjct: 541 VEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREII 600

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
           +RDT RFH+FK+G CSC ++W
Sbjct: 601 VRDTNRFHHFKNGYCSCGEFW 621



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 45/225 (20%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F+    ++   ++ ++ G  +N  ++  +  F     + +  N+ T      + A+ + 
Sbjct: 205 VFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAA 264

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G+ +  +  K+G+  + FV   L DMY + G    A+ VF    EKN    V+LWN 
Sbjct: 265 LIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKN----VVLWNA 320

Query: 205 LING-----------------------------------CSKIGYLRKAVELFGMMPK-- 227
           +++G                                   CS +G + K  + F +M +  
Sbjct: 321 ILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVH 380

Query: 228 ---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-WTAMI 268
               NV  +  ++D   R G L +A +  ++MP     S W +++
Sbjct: 381 NVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 39/184 (21%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A ++F     KN+ ++N ++ G + +      + +F  M ++ + PN +TY  V  +
Sbjct: 300 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 359

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            + L L+  GR            +D  +RVH                        N S +
Sbjct: 360 CSHLGLVEKGRKY----------FDLMIRVH------------------------NVSPN 385

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-WVSLIDG--FMRKGDLKK--AGELF 253
           VL ++ +++   + G L +A +    MP    AS W SL+      R  +L +  A  LF
Sbjct: 386 VLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLF 445

Query: 254 EQMP 257
           E  P
Sbjct: 446 EIEP 449


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 210/696 (30%), Positives = 349/696 (50%), Gaps = 83/696 (11%)

Query: 16  TTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASL 75
           T   +S  KP ++IT   ++S    + + K++ QIH+ II     AS  +   L+ S   
Sbjct: 132 TEMCRSGVKP-DHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCK 190

Query: 76  HKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP-F 134
              +D A  +F     K+   FNV+I G  +    +  +  F+ M  +  +P+  T+   
Sbjct: 191 TCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAM 250

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +  SV S  ++  G+ +H L +K+   +D FV   L D Y +      A  +FDE PE +
Sbjct: 251 LGMSVGSEDVI-FGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELD 309

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMM-----PKKN-------------------- 229
                + +N++I G +  G   K+ +LF  +      +KN                    
Sbjct: 310 G----VSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGR 365

Query: 230 -------VASWVS-------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                  V + VS       L+D + +    + A  +F  +  +  V WTA+I+ + Q G
Sbjct: 366 QTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKG 425

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI-- 333
             E+AL MF +M    V  +  T  S L A A + ++  G ++H+  S    GL  ++  
Sbjct: 426 FHEEALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHS--SVIRLGLLSSVFS 483

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
           G+ LVDMYA CG+++ A  VF E  +++++ W A+I   + +G  E     F  M+ SG 
Sbjct: 484 GSVLVDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGL 543

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG- 452
            PD   FL++LTAC + G V+ AL +F+SM   Y ++P  KH+  ++++L R G+ ++  
Sbjct: 544 YPDSVSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAE 603

Query: 453 ------------------------YQN---SQNSFTKLLQLKP-KHPSSYVLLSNIYAAE 484
                                   ++N   ++ +  +L ++   +  ++YV +SNIYA  
Sbjct: 604 NLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEA 663

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
           G+W++ A+V+  M+ R +KK   +S++E++  VH F A    H   ++I  K+  ++   
Sbjct: 664 GKWENAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELM 723

Query: 543 REQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
            ++GY P T   L N+ EE K E+L  HSE+LA+AF LI T  G+ I I+K L  C DCH
Sbjct: 724 DKEGYKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCH 783

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           + +K  SKI  REI +RD +RFH+F+DG+CSC DYW
Sbjct: 784 AAIKVISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 173/405 (42%), Gaps = 47/405 (11%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           +N   + RQ+  ++   N  + + + +  + S +L +    A  +F+    +N   + ++
Sbjct: 59  ANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFR----ARELFESMFSRNEVSWTIM 114

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           I G ++N+  +   + +  M R  V+P+ +T+  +       + L     +H  I++ G 
Sbjct: 115 IGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGF 174

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
                V   L D Y +      A ++F E P K+     + +NV+I G +K G+  +A++
Sbjct: 175 SASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDS----VSFNVMITGYTKYGFREEALK 230

Query: 221 LFGMMPKKNV--------------------------------ASWV-------SLIDGFM 241
           LF  M   +                                  S+V       +L+D + 
Sbjct: 231 LFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYS 290

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           +   +  A  LF++MPE   VS+  +I G++ NG+ EK+  +F ++        +F   +
Sbjct: 291 KHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFAT 350

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LS  A    L  G + H          +  +G ALVDMYAKC   E A+ +F     ++
Sbjct: 351 MLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRN 410

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            + WTA+I      G +E+A++ FK+M       D   F + L A
Sbjct: 411 SVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKA 455



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 109/203 (53%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +N  +    +   + KA +LF  MP +N +S   ++ G+++  +L +A ELFE M  +  
Sbjct: 49  FNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNE 108

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSWT MI G+SQN + ++A  ++ +M  +GV+ +  T  + LS       L+  +++H++
Sbjct: 109 VSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSH 168

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I    F     +  +LVD Y K   ++ AS +F E   KD +++  MI G   +G  E+A
Sbjct: 169 IIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEA 228

Query: 382 IQYFKKMMYSGTEPDGTVFLAIL 404
           ++ F +M     +P G  F A+L
Sbjct: 229 LKLFMQMRNMDFQPSGFTFAAML 251



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 138/319 (43%), Gaps = 30/319 (9%)

Query: 110 FQSCISHFVFMLRLSVRPNRLT--------YPF---------VSKSVASLSLLSLGRGLH 152
           F   IS F F L+  VR N++          P+         VS  V S +L        
Sbjct: 42  FDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFE 101

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
            +  ++ V +   +       Y Q  + + AF ++ E          + +  L++G    
Sbjct: 102 SMFSRNEVSWTIMI-----GGYSQNNQPKEAFNLYTEMCRSGVKPDHITFATLLSGFDDT 156

Query: 213 GYLRKAVEL------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
             L++ +++      FG     ++  + SL+D + +   L  A +LF +MP K  VS+  
Sbjct: 157 TTLKEVLQIHSHIIRFGF--SASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNV 214

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
           MI G+++ G  E+AL +F QM +   + + FT  + L        +  G ++H       
Sbjct: 215 MITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTS 274

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           +     +  AL+D Y+K   I+ A  +F E  E D +++  +I G A +G+YE++   FK
Sbjct: 275 YVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFK 334

Query: 387 KMMYSGTEPDGTVFLAILT 405
           ++  +  +     F  +L+
Sbjct: 335 RLQGTSFDRKNFPFATMLS 353


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 206/674 (30%), Positives = 335/674 (49%), Gaps = 90/674 (13%)

Query: 45  KQLRQIHAQIILHNLFA-SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           K+ R++H  +I   L      I   L++  +   SI  A  +F   T K+   +N +I G
Sbjct: 330 KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITG 389

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
           L +N  F   +  +  M R  + P   T      S ASL    LG+ +H   +K G++ +
Sbjct: 390 LDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLN 449

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK------------ 211
             V   L  +Y + G      K+F   PE ++    + WN +I   ++            
Sbjct: 450 VSVSNALMTLYAETGYLNECRKIFSSMPEHDQ----VSWNSIIGALARSERSLPEAVVCF 505

Query: 212 --------------------------IGYLRKAVELFGMMPKKNVASWVS----LIDGFM 241
                                      G L K  ++ G+  K N+A   +    LI  + 
Sbjct: 506 LNAQRAGQKLNRITFSSVLSAVSSLSFGELGK--QIHGLALKNNIADEATTENALIACYG 563

Query: 242 RKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
           + G++    ++F +M E+   V+W +MI+G+  N    KAL + + ML  G R + F   
Sbjct: 564 KCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYA 623

Query: 301 SALSACAKVGALEAGVRVH--NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           + LSA A V  LE G+ VH  +  +C +  +   +G+ALVDMY+KCG ++ A   F    
Sbjct: 624 TVLSAFASVATLERGMEVHACSVRACLESDV--VVGSALVDMYSKCGRLDYALRFFNTMP 681

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLAL 417
            ++  +W +MI G A HG+ E+A++ F+ M   G T PD   F+ +L+AC ++G ++   
Sbjct: 682 VRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGF 741

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ----------------------------- 448
             F+SM   Y + P ++H + + ++L R G+                             
Sbjct: 742 KHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCR 801

Query: 449 -DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
            + +  +  + +   L QL+P++  +YVLL N+YAA GRW+D+ + R  M+   +KK+ G
Sbjct: 802 ANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAG 861

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEE 564
           +S++ +   VH F AG   H  A  I+ KL+++    R+ GY+P T + L+++++E KEE
Sbjct: 862 YSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEE 921

Query: 565 ALGCHSEKLALAFGL-IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
            L  HSEKLA+AF L  Q +    I+I+K L +CGDCHS  KY SKI  R+I+LRD+ RF
Sbjct: 922 ILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRF 981

Query: 623 HYFKDGTCSCRDYW 636
           H+F+DG CSC D+W
Sbjct: 982 HHFQDGACSCSDFW 995



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 101/184 (54%), Gaps = 4/184 (2%)

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           K+V    +LI+ ++  GD   A ++F++MP +  VSW  +++G+S+NGE ++AL     M
Sbjct: 34  KDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDM 93

Query: 288 LDAGVRANDFTVVSALSACAKVGALEA--GVRVHNYISCNDFGLKGAIGTALVDMYAKC- 344
           +  G+ +N +  VS L AC ++G++    G ++H  +    + +   +   L+ MY KC 
Sbjct: 94  VKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCI 153

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G++  A   FG+ + K+ ++W ++I   +  G    A + F  M Y G+ P    F +++
Sbjct: 154 GSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLV 213

Query: 405 -TAC 407
            TAC
Sbjct: 214 TTAC 217



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 158/381 (41%), Gaps = 65/381 (17%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS----- 136
           A  +FD    +N   +  ++ G + N   +  +     M++  +  N+  Y FVS     
Sbjct: 55  ARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMVKEGIFSNQ--YAFVSVLRAC 112

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNK 195
           + + S+ +L  GR +H L+ K     DA V   L  MY + +G    A   F +   KN 
Sbjct: 113 QEIGSVGIL-FGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNS 171

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMM------------------------PKKNVA 231
               + WN +I+  S+ G  R A  +F  M                        P   + 
Sbjct: 172 ----VSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLL 227

Query: 232 SWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
             +                  L+  F + G L  A ++F QM  +  V+   ++ G  + 
Sbjct: 228 EQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQ 287

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALS-----ACAKVGALEAGVRVHNYISCN---D 326
              E+A  +F  M ++ +  +  + V  LS     + A+   L+ G  VH ++      D
Sbjct: 288 KWGEEATKLFMDM-NSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVD 346

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F +   IG  LV+MYAKCG+I  A  VF    +KD ++W +MI GL  +G + +A++ +K
Sbjct: 347 FMV--GIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYK 404

Query: 387 KMMYSGTEPDGTVFLAILTAC 407
            M      P     ++ L++C
Sbjct: 405 SMRRHDILPGSFTLISSLSSC 425



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 151/373 (40%), Gaps = 51/373 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSA-SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           RQIH  +   +    + ++  LIS       S+ YAL  F     KN   +N +I   ++
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL--LSLGRGLHCLIVKSGVEYDA 164
               +S    F  M     RP   T+  +  +  SL+   + L   + C I KSG+  D 
Sbjct: 184 AGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDL 243

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           FV   L   + + G    A KVF++   +N     +  N L+ G  +  +  +A +LF  
Sbjct: 244 FVGSGLVSAFAKSGSLSYARKVFNQMETRN----AVTLNGLMVGLVRQKWGEEATKLFMD 299

Query: 225 M------------------PKKNVASWVSLIDG--------------------------F 240
           M                  P+ ++A  V L  G                          +
Sbjct: 300 MNSMIDVSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMY 359

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + G +  A  +F  M +K  VSW +MI G  QNG   +A+  +  M    +    FT++
Sbjct: 360 AKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLI 419

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S+LS+CA +   + G ++H         L  ++  AL+ +YA+ G +     +F    E 
Sbjct: 420 SSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEH 479

Query: 361 DLLTWTAMIWGLA 373
           D ++W ++I  LA
Sbjct: 480 DQVSWNSIIGALA 492



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 173/428 (40%), Gaps = 55/428 (12%)

Query: 30  TETHIISLIHSSNS-----TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           TE    SL+ ++ S      + L QI   I    L     + + L+S+ +   S+ YA  
Sbjct: 205 TEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARK 264

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNR---LTYPFVSKSVA 140
           +F+    +N    N L+ GL      +     F+ M  +  V P     L   F   S+A
Sbjct: 265 VFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLA 324

Query: 141 SLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
               L  GR +H  ++ +G V++   +   L +MY + G    A +VF    +K+     
Sbjct: 325 EEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDS---- 380

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKK------------------------------- 228
           + WN +I G  + G   +AVE +  M +                                
Sbjct: 381 VSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGE 440

Query: 229 --------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA-EK 279
                   NV+   +L+  +   G L +  ++F  MPE   VSW ++I   +++  +  +
Sbjct: 441 SLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPE 500

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A+  F     AG + N  T  S LSA + +   E G ++H     N+   +     AL+ 
Sbjct: 501 AVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIA 560

Query: 340 MYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            Y KCG ++    +F    E +D +TW +MI G   +    +A+     M+ +G   D  
Sbjct: 561 CYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSF 620

Query: 399 VFLAILTA 406
           ++  +L+A
Sbjct: 621 MYATVLSA 628



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 124/288 (43%), Gaps = 54/288 (18%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
            R  H  + K+ ++ D ++  +L + Y++ G +  A KVFDE P +N     + W  +++
Sbjct: 20  ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRN----CVSWACIVS 75

Query: 208 GCSKIGYLRKAVELFGMMPKKNVAS----WVSL-----------------IDGFMRK--- 243
           G S+ G  ++A+     M K+ + S    +VS+                 I G M K   
Sbjct: 76  GYSRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSY 135

Query: 244 ------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                             G +  A   F  +  K  VSW ++I+ +SQ G+   A  +F 
Sbjct: 136 AVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFS 195

Query: 286 QMLDAGVRANDFTVVSAL-SACAKVGALEAGVRVHNYISC--NDFGLKGA--IGTALVDM 340
            M   G R  ++T  S + +AC+     E  VR+   I C     GL     +G+ LV  
Sbjct: 196 SMQYDGSRPTEYTFGSLVTTACSLT---EPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSA 252

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           +AK G++  A  VF + + ++ +T   ++ GL      E+A + F  M
Sbjct: 253 FAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDM 300



 Score = 42.4 bits (98), Expect = 0.79,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 105/249 (42%), Gaps = 15/249 (6%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++S   S  + ++  ++HA  +   L +   + + L+   S    +DYAL  F+    +N
Sbjct: 625 VLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRN 684

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFM-LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            + +N +I G A +   +  +  F  M L     P+ +T+  V  + +   LL  G    
Sbjct: 685 SYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHF 744

Query: 153 CLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS- 210
             +  S   Y    R+ H + M   LG+     K+ D   +     +VL+W  ++  C  
Sbjct: 745 ESMSDS---YGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCR 801

Query: 211 ----KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG---DLKKAGELFE--QMPEKGV 261
               K    +KA E+   +  +N  ++V L + +   G   DL KA +  +   + ++  
Sbjct: 802 ANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAG 861

Query: 262 VSWTAMING 270
            SW  M +G
Sbjct: 862 YSWVTMKDG 870


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  306 bits (785), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 196/561 (34%), Positives = 300/561 (53%), Gaps = 77/561 (13%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G   H  I++ G+  D      L +MY + G    A K+FDE P +    S++ WN ++ 
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVR----SLVSWNTMVG 94

Query: 208 GCSKIGYLRKAVELFGMMPKK--------------------------------------- 228
             ++ G   KA+ LF  M K+                                       
Sbjct: 95  SHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDS 154

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           NV    +L+D + + G +K A  +FE MPE+  V+W++M+ G+ QN   E+AL +F +  
Sbjct: 155 NVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQ 214

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNI 347
             G+  N FT+ SALSACA   AL  G +V   +SC    G    + ++L+DMYAKCG I
Sbjct: 215 AMGLEHNQFTISSALSACAARAALIEGKQVQA-VSCKTGIGSNIFVISSLIDMYAKCGII 273

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           E A  VF   +EK+++ W A++ G + H R  +A+ YF+KM   G  P+   ++++L+AC
Sbjct: 274 EEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSAC 333

Query: 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------------- 447
            + G V+    +FD M   + + P+V H++ +V++L R G                    
Sbjct: 334 SHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASM 393

Query: 448 -----QDSQGYQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                   + Y+N   ++ +   L +++P +  ++VLLSNIYAA  RW++VAR R L++ 
Sbjct: 394 WGSLLASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKE 453

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
              KK+ G S+IE+   VH F  G   H    EI+ KLED++   ++ GY   TE  LH+
Sbjct: 454 SKAKKERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHD 513

Query: 558 IKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++E  K+E L  HSEKLAL FG++    G  I+I+K L ICGDCHS MK AS I++REI+
Sbjct: 514 VEESRKQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREII 573

Query: 617 LRDT-RFHYFKDGTCSCRDYW 636
           +RDT RFH+FK+G CSC ++W
Sbjct: 574 VRDTNRFHHFKNGYCSCGEFW 594



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/264 (19%), Positives = 107/264 (40%), Gaps = 45/264 (17%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           + +Q+H   +   L ++  + T L+   +    +  A  +F+    ++   ++ ++ G  
Sbjct: 139 ECKQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYV 198

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           +N  ++  +  F     + +  N+ T      + A+ + L  G+ +  +  K+G+  + F
Sbjct: 199 QNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIF 258

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING----------------- 208
           V   L DMY + G    A+ VF    EKN    V+LWN +++G                 
Sbjct: 259 VISSLIDMYAKCGIIEEAYTVFSSVEEKN----VVLWNAILSGFSRHVRSLEAMIYFEKM 314

Query: 209 ------------------CSKIGYLRKAVELFGMMPK-----KNVASWVSLIDGFMRKGD 245
                             CS +G + K  + F +M +      NV  +  ++D   R G 
Sbjct: 315 QQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGL 374

Query: 246 LKKAGELFEQMPEKGVVS-WTAMI 268
           L +A +  ++MP     S W +++
Sbjct: 375 LHEAKDFIDRMPFDATASMWGSLL 398



 Score = 43.1 bits (100), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 76/184 (41%), Gaps = 39/184 (21%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A ++F     KN+ ++N ++ G + +      + +F  M ++ + PN +TY  V  +
Sbjct: 273 IEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSA 332

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            + L L+  GR            +D  +RVH                        N S +
Sbjct: 333 CSHLGLVEKGRKY----------FDLMIRVH------------------------NVSPN 358

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS-WVSLIDG--FMRKGDLKK--AGELF 253
           VL ++ +++   + G L +A +    MP    AS W SL+      R  +L +  A  LF
Sbjct: 359 VLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLF 418

Query: 254 EQMP 257
           E  P
Sbjct: 419 EIEP 422


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 203/686 (29%), Positives = 339/686 (49%), Gaps = 81/686 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           NN T   ++    +    +  R +H       L A   ++T L+   +   S  +A ++F
Sbjct: 128 NNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVF 187

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                +++  +N ++ G A +  +   I+  + M +    PN  T   +   +A    LS
Sbjct: 188 RRMPARDVVAWNAMLAGYALHGKYSDTIACLLLM-QDDHAPNASTLVALLPLLAQHGALS 246

Query: 147 LGRGLHCLIVKSGVEYD----AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
            GR +H   V++   +D      V   L DMY + G    A +VF+    +N+    + W
Sbjct: 247 QGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNE----VTW 302

Query: 203 NVLINGCSKIGYLRKAVELFGMM--------PKKNVASWV-------------------- 234
           + L+ G    G + +A  LF  M           +VAS +                    
Sbjct: 303 SALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLA 362

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       SL+  + + G + +A  LF+QM  K  VS++A+++G+ QNG+A++A  
Sbjct: 363 KSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFR 422

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           +F +M    V+ +  T+VS + AC+ + AL+ G   H  +       + +I  AL+DMYA
Sbjct: 423 VFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYA 482

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KCG I+ +  +F     +D+++W  MI G  IHG  ++A   F  M +   EPD   F+ 
Sbjct: 483 KCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFIC 542

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462
           +++AC +SG V     +F  M   Y I P ++H+  +V+LL+R G   + YQ  Q    K
Sbjct: 543 LISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLK 602

Query: 463 ----------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                       + QL P+   ++VLLSNI++A GR+ + A VR
Sbjct: 603 ADVRVWGALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVR 662

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
            + + +  KK PG S+IE+NG +H F  G   H  + EI+ +L++I+    + GY   T 
Sbjct: 663 IIQKEQGFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTS 722

Query: 553 WVLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
           +VL +++EE++E AL  HSEKLA+AFG++  +   TI + K L +CGDCH+++KY + + 
Sbjct: 723 FVLQDVEEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVR 782

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
           +R I++RD  RFH+FK+G CSC D+W
Sbjct: 783 KRAIIVRDANRFHHFKNGQCSCGDFW 808



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 47/386 (12%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           I  Q+  +  +   +  A  +FD      +H +N LIR  +      +   +     R  
Sbjct: 65  IICQIDHNRMICGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRL 124

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
            +PN  T+PFV K+ ++L  L   R +HC   ++G+  D FV   L D+Y +    R A 
Sbjct: 125 PQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAA 184

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIG---------------YLRKAVELFGMMP--- 226
            VF   P ++    V+ WN ++ G +  G               +   A  L  ++P   
Sbjct: 185 TVFRRMPARD----VVAWNAMLAGYALHGKYSDTIACLLLMQDDHAPNASTLVALLPLLA 240

Query: 227 ------------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
                                   K  V    +L+D + + G L  A  +FE M  +  V
Sbjct: 241 QHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEV 300

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNY 321
           +W+A++ GF   G   +A ++F  ML  G+   +  +V SAL ACA +  L  G ++H  
Sbjct: 301 TWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHAL 360

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           ++ +        G +L+ MYAK G I+ A+ +F +   KD ++++A++ G   +G+ ++A
Sbjct: 361 LAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEA 420

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
            + F+KM     +PD    ++++ AC
Sbjct: 421 FRVFRKMQACNVQPDVATMVSLIPAC 446


>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
 gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
          Length = 1495

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 198/573 (34%), Positives = 301/573 (52%), Gaps = 88/573 (15%)

Query: 130 LTYPFVSKSVASL-----SLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRG- 182
           L  P V K +  L     S ++  R +H   ++ GV   DA +  HL    V L      
Sbjct: 10  LLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPM 69

Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PKKNVASW 233
             A KVF +     K  +V +WN LI G ++IG    A  L+  M       P  +   +
Sbjct: 70  SYAHKVFSKI---EKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPF 126

Query: 234 V---------------------------------SLIDGFMRKGDLKKAGELFEQMPEKG 260
           +                                 SL+  +   GD+  A ++F++MPEK 
Sbjct: 127 LIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD 186

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V+W ++INGF++NG+ E+ALA++ +M   G++ + FT+VS LSACAK+GAL  G RVH 
Sbjct: 187 LVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHV 246

Query: 321 YISCNDFGLKGAIGTA--LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           Y+     GL   + ++  L+D+YA+CG +E A  +F E  +K+ ++WT++I GLA++G  
Sbjct: 247 YMI--KVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFG 304

Query: 379 EQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
           ++AI+ FK M  + G  P    F+ IL AC + G VK    +F  MR +Y IEP ++H  
Sbjct: 305 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 364

Query: 438 VVVNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPK 469
            +V+LL+R GQ  + Y+                             ++ +  ++LQL+P 
Sbjct: 365 CMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPN 424

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
           H   YVLLSN+YA+E RW DV ++R  M R  +KK PG S +EV   VH F  G   H  
Sbjct: 425 HSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQ 484

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGT 586
           +  I++KL+++    R +GY+P    V  ++ +EEKE A+  HSEK+A+AF LI T   +
Sbjct: 485 SDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERS 544

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
            I +VK L +C DCH  +K  SK+  REIV+RD
Sbjct: 545 PITVVKNLRVCADCHLAIKLVSKVYNREIVVRD 577



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/421 (26%), Positives = 198/421 (47%), Gaps = 58/421 (13%)

Query: 42  NSTKQLRQIHAQIILHNL-FASSRITTQLI---SSASLHKSIDYALSIFDHFT-PKNLHI 96
           +S  +LRQIHA  I H +  + + +   LI    S      + YA  +F     P N+ I
Sbjct: 28  SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           +N LIRG AE  +  S  S +  M R+S  V P+  TYPF+ K+V +++ + LG  +H +
Sbjct: 88  WNTLIRGYAEIGNSISAFSLYREM-RVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSV 146

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------ 208
           +++SG     +V+  L  +Y   G    A+KVFD+ PEK+    ++ WN +ING      
Sbjct: 147 VIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKD----LVAWNSVINGFAENGK 202

Query: 209 -----------------------------CSKIGYL----RKAVELFGMMPKKNVASWVS 235
                                        C+KIG L    R  V +  +   +N+ S   
Sbjct: 203 PEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNV 262

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRA 294
           L+D + R G +++A  LF++M +K  VSWT++I G + NG  ++A+ +F  M    G+  
Sbjct: 263 LLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLP 322

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-S 351
            + T V  L AC+  G ++ G      +   ++ ++  I     +VD+ A+ G ++ A  
Sbjct: 323 CEITFVGILYACSHCGMVKEGFEYFRRMR-EEYKIEPRIEHFGCMVDLLARAGQVKKAYE 381

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            +     + +++ W  ++    +HG  +  +  F ++     EP+ +    +L+  + S 
Sbjct: 382 YIKSMPMQPNVVIWRTLLGACTVHG--DSDLAEFARIQILQLEPNHSGDYVLLSNMYASE 439

Query: 412 Q 412
           Q
Sbjct: 440 Q 440


>gi|297735590|emb|CBI18084.3| unnamed protein product [Vitis vinifera]
          Length = 496

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 165/429 (38%), Positives = 247/429 (57%), Gaps = 44/429 (10%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF Q+ +  +  W  MI G   N   + A+  +  M   G   N+FT    L ACA++  
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 312 LEAGVRVHNYI-------SCNDFGL--KGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L+ GV++H  +          + G+     +GT+LVDMYAKCGN+E A  VF    EKD+
Sbjct: 128 LQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 187

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEPDGTVFLAILTACWYSGQVKLALNF 419
           ++W AMI G A++G  ++AI  F +M      G +PDG  F+ +L  C ++G V     +
Sbjct: 188 VSWGAMIQGYALNGLPKEAIDLFLQMQRENKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 247

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN--------------------- 458
           F+SM   + + PS++H+  +V+LL R G   + +Q  +N                     
Sbjct: 248 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHR 307

Query: 459 -------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                  +  +L++L+P +  +YVLLSNIY+A  +W + A+VR  M  + I+K PG S+I
Sbjct: 308 DTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWI 367

Query: 512 EVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGC 568
           EV+G VH F  G   H L+++I++KL+++    +  GY+P T++VL +I+EE KE  LGC
Sbjct: 368 EVDGIVHEFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGC 427

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKD 627
           HSEKLA+AFGLI  TP   I++VK L +CGDCH  +K  S I+ REI +RD  RFH F++
Sbjct: 428 HSEKLAIAFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFRE 487

Query: 628 GTCSCRDYW 636
           G+CSC DYW
Sbjct: 488 GSCSCNDYW 496



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/159 (32%), Positives = 77/159 (48%), Gaps = 13/159 (8%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           +Y   +F      N+ ++N +IRGL  N  F   I  +  M      PN  T+PFV K+ 
Sbjct: 63  NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 140 ASLSLLSLGRGLHCLIVKS---------GVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           A L  L LG  +H L+VK          G+  + FV   L DMY + G    A  VFD  
Sbjct: 123 ARLLDLQLGVKIHTLVVKEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGM 182

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           PEK+    ++ W  +I G +  G  ++A++LF  M ++N
Sbjct: 183 PEKD----IVSWGAMIQGYALNGLPKEAIDLFLQMQREN 217


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 201/661 (30%), Positives = 313/661 (47%), Gaps = 78/661 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IHA +I     +   +   LI+       I  A  +FD    ++   +N +I G  EN
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M  LSV P+ +T   V+ +   L    LGRG+H  +VKS    D  + 
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------------------- 206
             L  MY  LG+   A  VF     + +S+ V+ W  +I                     
Sbjct: 338 NSLIQMYSSLGRLEEAETVF----SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393

Query: 207 --------------NGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKK 248
                         + C+ IG+L   + L  +  K  + S V    SLID + +   +  
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F  +  K VVSWT++I G   N  + +AL +FF+ +   ++ N  T++S LSACA+
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACAR 512

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL  G  +H +      G  G +  A++DMY +CG    A   F   K KD+  W  +
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNIL 571

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           + G A  G+ + A++ F KM+     PD   F+++L AC  SG V   L +F+ M+  Y 
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYN 631

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SF 460
           + P++KH+  VV++L R GQ    Y   Q+                            + 
Sbjct: 632 LTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAA 691

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            ++ +   K    Y+LL N+YA  G W  V++VR+LM+ R +  DPG S++E+ G VH F
Sbjct: 692 KRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAF 751

Query: 521 EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
            +G   H  +KEI+  L+   +  +E G+          I+  + +    HSE+ A+AFG
Sbjct: 752 LSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIFCGHSERQAIAFG 811

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD--Y 635
           LI T PG  I + K L +C  CH+++K+ S I +REI +RD   +H+FKDG CSC D  Y
Sbjct: 812 LINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGY 871

Query: 636 W 636
           W
Sbjct: 872 W 872



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 185/365 (50%), Gaps = 44/365 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F   + +++  +NVL+ G A+   F   ++ +  ML   +RPN  T+P V K+ A 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG 210

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +S ++ G+ +H  +++ G E D  V   L  MYV+ G    A  +FD+ P++++    + 
Sbjct: 211 VSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR----IS 266

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK----------KNVASWVSLID---------GFMR 242
           WN +I+G  + G   + +ELF MM +            VAS   L+D         G++ 
Sbjct: 267 WNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVV 326

Query: 243 K--------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           K                    G L++A  +F +M  K VVSWTAMI     +    KA+ 
Sbjct: 327 KSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVE 386

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            +  M   G+  ++ T+VS LSACA +G L+ G+R+H             +  +L+DMY+
Sbjct: 387 TYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYS 446

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KC  ++ A  VF     K++++WT++I GL I+ R  +A+ +F++M  S  +P+    ++
Sbjct: 447 KCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLIS 505

Query: 403 ILTAC 407
           +L+AC
Sbjct: 506 VLSAC 510



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 152/333 (45%), Gaps = 48/333 (14%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---- 225
           L  M+V+ G    A+ VF +  E++    V  WNVL+ G +K G   +A+ L+  M    
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERD----VFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 226 PKKNVASWVS-----------------------------------LIDGFMRKGDLKKAG 250
            + NV ++ S                                   LI  +++ GD+  A 
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF++MP++  +SW AMI+G+ +NG   + L +F  M +  V  +  T+ +  SAC  + 
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
               G  VH Y+  ++FG   ++  +L+ MY+  G +E A  VF   + KD+++WTAMI 
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
            L  H    +A++ +K M   G  PD    +++L+AC   G + L +        +  I+
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRL-----HEIAIK 428

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
             +  H +V N L  +    +   N+   F  +
Sbjct: 429 TGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI 461



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 155/393 (39%), Gaps = 49/393 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           IT T + S     ++ +  R +H  ++         +   LI   S    ++ A ++F  
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR 359

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              K++  +  +I  L  +      +  +  M    + P+ +T   V  + A +  L LG
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
             LH + +K+G+     V   L DMY +      A +VF     KN              
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
                            K  SV L +VL + C++IG L +  E+     +  V       
Sbjct: 480 NRSFEALLFFRQMKESMKPNSVTLISVL-SACARIGALMRGKEIHAHALRTGVG-----F 533

Query: 238 DGFMRKGDLKKAGELFEQMP--------EKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           DGF+    L        ++P        +K V +W  ++ G++Q G+A+ A+ +F +ML+
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI 347
             +  ++ T +S L AC+K G +  G+   N +  N + L   +     +VD+  + G +
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK-NKYNLTPNLKHYACVVDILGRAGQL 652

Query: 348 EAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           + A   +       D   W A++    IH   E
Sbjct: 653 DDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 69/133 (51%)

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  E+A+     ML+  +   +   ++ L  C    A + G RV+  +S +   L   +G
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+ M+ + GN+  A  VFG+  E+D+ +W  ++ G A  G +++A+  + +M+++   
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 395 PDGTVFLAILTAC 407
           P+   F ++L  C
Sbjct: 196 PNVYTFPSVLKTC 208


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 198/619 (31%), Positives = 317/619 (51%), Gaps = 79/619 (12%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N   +  L+ GL++N      ++ F  M R  V P R      +++ A+L     G  L
Sbjct: 4   RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQL 63

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           HC+ V+ G + + FV  +LADMY + G    A +VFD+ P+K+     + W  +I+G +K
Sbjct: 64  HCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKD----AVAWTAMIDGYAK 119

Query: 212 IGYLRKAVELFGMMPKKNVAS-------------------WVS----------------- 235
            G L  AV  F  M ++ +                     W+S                 
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 179

Query: 236 ----LIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
               LID + +  D++ A  + +  P    VVS T+MI+G+ +    E+AL ++ ++   
Sbjct: 180 VRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQ 239

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           GV  N+FT  S +  CA    LE G ++H  +   D      +G+ LVDMY KCG I  +
Sbjct: 240 GVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLS 299

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F E + +  + W A+I   A HG   +AIQ F +M+YSG  P+   F+++LTAC ++
Sbjct: 300 MQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHA 359

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------- 453
           G V   L +F SM+  + IEP  +H++ +++   R G+  + Y                 
Sbjct: 360 GLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCS 419

Query: 454 -----------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                      +  + +   L++L+P +   +V LS IYA+ G+W+DV  VR LM+   I
Sbjct: 420 LLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRI 479

Query: 503 KKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK PG+S+++ N   H F  E   H   K+I+ KLE++    +E+GY+P T ++  N+++
Sbjct: 480 KKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLED 539

Query: 561 -EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK-LTICGDCHSLMKYASKISQREIVLR 618
             KE  L  HSE++A+AF LI + P T   IVKK L IC DCH+  K+  K+ +R+I++R
Sbjct: 540 IAKERILRYHSERIAVAFALI-SMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVR 598

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D +RFH+F +G CSC DYW
Sbjct: 599 DNSRFHHFVNGRCSCGDYW 617



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 58/152 (38%), Positives = 80/152 (52%), Gaps = 1/152 (0%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MP +  VSWT +++G SQN     ALA F  M  AGV    F + SA  A A +GA   G
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H       F  +  + + L DMY+KCG +  A  VF +  +KD + WTAMI G A +
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 376 GRYEQAIQYFKKMMYSG-TEPDGTVFLAILTA 406
           G  E A+  F+ M   G    D  VF ++L+A
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSA 152



 Score = 47.0 bits (110), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 4/170 (2%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q  Q+HAQ+I  +L   S + + L+        I  ++ +F+    +    +N +I   
Sbjct: 262 EQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVF 321

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYD 163
           A++ H +  I  F  M+   +RPN + +  +  + +   L+  G +  + +    G+E  
Sbjct: 322 AQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPK 381

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
                 + D Y + G+   A+K   E P K  +     W  L+  C   G
Sbjct: 382 EEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYG---WCSLLGACRMRG 428


>gi|297811673|ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 623

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 178/487 (36%), Positives = 267/487 (54%), Gaps = 56/487 (11%)

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           SV + N L++   K G++ +   +F  + +K+V SW  ++D  ++   LK+  E+F++MP
Sbjct: 145 SVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVKWEGLKRGREVFDEMP 204

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGV 316
           E+ VV+WT M+ G+   G   + L +  +M+   G   N  T+ S LSACA+ G L  G 
Sbjct: 205 ERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVIGR 264

Query: 317 RVHNYISCNDFGLKGA-------------IGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            VH Y       LK A             +GTALVDMYAKCGNI+++  VF   ++++++
Sbjct: 265 WVHVY------ALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVFRLMRKRNVV 318

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           TW A+  GLA+HG+    I  F +M+    +PD   F A+L+AC + G V      F S+
Sbjct: 319 TWNALFSGLAMHGKGRMVIDMFPEMVRE-VKPDDLTFTALLSACSHLGMVDEGWRCFHSL 377

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQN 455
           +F Y +EP V H+  +V++L R G+  +                              + 
Sbjct: 378 QF-YGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKLEI 436

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
           ++    +L+Q+ P H    +L+SN+Y AEGR      +R  ++ R I+K PG S I VN 
Sbjct: 437 AERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPGLSSIYVND 496

Query: 516 HVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK---EEKEEALGCHS 570
            VHRF +G   H   KE++ KL +++   R  GY+P    ++   +   EEKE+AL CHS
Sbjct: 497 SVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPDISGLVSPSEGDLEEKEQALCCHS 556

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGT 629
           EKLA+ FGL++T P T + + K L IC DCHS MK  SK+  REI++RD  RFH FK G+
Sbjct: 557 EKLAVCFGLLETKPRTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGS 616

Query: 630 CSCRDYW 636
           CSC DYW
Sbjct: 617 CSCSDYW 623


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 196/679 (28%), Positives = 345/679 (50%), Gaps = 87/679 (12%)

Query: 43  STKQL---RQIHAQIILHNLFASSRI-----TTQLISSASLH---KSIDYALSIFDHFTP 91
           +TK L   + IH Q+++ N  ++          QL S  +L+     +  A  +FD  + 
Sbjct: 24  NTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSL 83

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +++  +NVL+ G   +      +  F  M+    +PN   +  V  + A    +  G   
Sbjct: 84  RSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQC 143

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD-ETPEKNKSESVLLWNVLINGCS 210
           H  + K G+ +  FV+  L  MY +      A +V + E    +       +N ++N   
Sbjct: 144 HGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALV 203

Query: 211 KIGYLRKAVELFGMMPKKNVA----SWVS------------------------------- 235
           + G L +AVE+ G M  + V     ++VS                               
Sbjct: 204 ESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVF 263

Query: 236 ----LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
               L+D F + GD+  A ++F+ +  + VV WT+++  + QNGE E+ L +   M   G
Sbjct: 264 VGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREG 323

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEA 349
             +N+FT    L+A A + AL  G  +H  +     G+K    +G AL++MY+KCG I++
Sbjct: 324 TMSNEFTFAVLLNAFAGMAALRHGDLLHARVE--KLGIKNRVIVGNALINMYSKCGCIDS 381

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           +  VF + + +D++TW AMI G + HG  +QA+  F+ M+ +G  P+   F+ +L+AC +
Sbjct: 382 SYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAH 441

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQ---------- 457
              V     + + +   + +EP ++H+T VV +L R G  ++++ +  +           
Sbjct: 442 LALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWR 501

Query: 458 ------------NSFTK----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                       N  TK    +LQ+ P+   +Y LLSN+YA    W  V  +R +M+ R+
Sbjct: 502 VLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERN 561

Query: 502 IKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
           +KK+PG S+IE+   VH F + G  H    +I++K++ ++   ++ GY+P  E VLH+++
Sbjct: 562 VKKEPGVSWIEIRNAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVE 621

Query: 560 EEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           +E++E+ L  HSEKLA+A+GL++      I+++K L IC DCH+ +K  SK++ R I++R
Sbjct: 622 DEQKESYLNYHSEKLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVR 681

Query: 619 D-TRFHYFKDGTCSCRDYW 636
           D +RFH+F+DGTC+C D+W
Sbjct: 682 DASRFHHFRDGTCTCTDHW 700



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 174/431 (40%), Gaps = 52/431 (12%)

Query: 18  NIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK 77
           N+ SS    N    T ++S    S    +  Q H  +    L     + + L+   S   
Sbjct: 111 NMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCF 170

Query: 78  SIDYALSIFD--HFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
            +D AL + +  H    N +    +N ++  L E+      +     M+   V  + +TY
Sbjct: 171 HVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTY 230

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
             V      +  L LG  +H  ++K G+ +D FV   L DM+ + G    A KVFD    
Sbjct: 231 VSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQN 290

Query: 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGF-----MRK 243
           +N    V++W  L+    + G   + + L   M ++    N  ++  L++ F     +R 
Sbjct: 291 RN----VVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRH 346

Query: 244 GDL------------------------KKAG------ELFEQMPEKGVVSWTAMINGFSQ 273
           GDL                         K G      ++F  M  + +++W AMI G+SQ
Sbjct: 347 GDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQ 406

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           +G  ++AL +F  ML AG   N  T V  LSACA +  +  G    N +    F ++  +
Sbjct: 407 HGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLM-KHFKVEPGL 465

Query: 334 G--TALVDMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              T +V +  + G +E A      T+ K D++ W  ++    IH  Y    +  + ++ 
Sbjct: 466 EHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYNLGTKIAETILQ 525

Query: 391 SGTEPDGTVFL 401
                 GT  L
Sbjct: 526 MDPRDMGTYTL 536


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 161/442 (36%), Positives = 261/442 (59%), Gaps = 34/442 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V    +L++ + +   +++A   FE++    VVSW+AM+  ++QNG A  AL ++ +M 
Sbjct: 44  DVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMG 103

Query: 289 DA--GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
            A  G+  N  T ++ L AC+ +GAL  G ++H  ++   F     +  ALV+ Y +CG+
Sbjct: 104 SARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNALVNFYGRCGS 163

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +  A +VF   + +D+++W++MI   A  GR ++A++ + +M+  GT PD  +F+++L A
Sbjct: 164 LGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFA 223

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY----------- 453
           C  SG V+ + +FF S+  D  +EP+++H+  +V++L R G+  D++             
Sbjct: 224 CSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPL 283

Query: 454 ---------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                          +  + +   + +L P++ S Y+ L+NIY+A  R KD AR+R LM+
Sbjct: 284 LYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLME 343

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
            R IKK PG S+IEV   VH F AG   H    EI+++++ +    +E GY   T+ VL 
Sbjct: 344 ERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQ 403

Query: 557 NIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           +++E EKE  L  HSEKLA+AFGLI T PG  ++IVK L +C DCH+  K  SK++ REI
Sbjct: 404 DVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREI 463

Query: 616 VLRDT-RFHYFKDGTCSCRDYW 636
           ++RDT RFH+F DG CSC DYW
Sbjct: 464 LVRDTNRFHHFLDGMCSCNDYW 485



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 68/125 (54%), Gaps = 2/125 (1%)

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           GV  N  T V+ LS     G+LE G RVH+ ++     +   +GTALV+MY KC ++E A
Sbjct: 5   GVERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEA 64

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM--MYSGTEPDGTVFLAILTACW 408
              F +    ++++W+AM+   A +G    A++ +++M     G  P+   F+ +L AC 
Sbjct: 65  RAAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARKGMAPNRVTFITLLDACS 124

Query: 409 YSGQV 413
           + G +
Sbjct: 125 FLGAL 129


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 190/582 (32%), Positives = 302/582 (51%), Gaps = 81/582 (13%)

Query: 35  ISLIHSSNSTKQLRQIHAQII--LHNLFASSRITTQLISSASLHKSID--YALSIFDHFT 90
           +S + +  S K L+QIHA II  + +  A   I+T+L +  +    ID  YALS+     
Sbjct: 26  LSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLR 85

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVF--MLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
             NL ++N +IRGLA  S+  S     V+  ML   + P+  T PFV K+ A    +  G
Sbjct: 86  TPNLPLYNAIIRGLA-TSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREG 144

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
             +H   +K G+  D +V   L  MY      R A KVFD +P+++    ++ W  +I G
Sbjct: 145 EEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRD----LVSWTTMIQG 200

Query: 209 CSKIGYLRKAVELFGMMPKKNVAS------------------------------------ 232
             K+G+ R+ V LF  M  +N+ +                                    
Sbjct: 201 YVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNL 260

Query: 233 ----WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 +L+D +++ GD   A ++F++MP K VVSW +MI+G +Q G+ +++L MF +M 
Sbjct: 261 DVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQ 320

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             GV+ +D T+V+ L++CA +G LE G  VH Y+  N     G IG ALVDMYAKCG+I+
Sbjct: 321 RLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNALVDMYAKCGSID 380

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF     KD+ ++TAMI GLA+HG+  +A+  F +M   G EPD   F+ +LTAC 
Sbjct: 381 QACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACS 440

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------- 459
           + G V+    +F+ M   Y + P ++H+  +V+LL R G  ++  +  +N          
Sbjct: 441 HVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPDAFVL 500

Query: 460 -------------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                                K+ +++P+   +YVL+SNIY++  RW+D  ++R  M+ R
Sbjct: 501 GALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKTMKER 560

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMA 540
           +++K PG S IE++G +H F+ G   H   KEI+  L++IM+
Sbjct: 561 NLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMS 602


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/558 (32%), Positives = 287/558 (51%), Gaps = 68/558 (12%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S  I E  +  L   +N   Q++Q+HAQII  NL     I  +LIS+ SL +  + A+ +
Sbjct: 15  SRRIFEERLQDLPKCAN-LNQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRV 73

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+     N+H+ N LIR  A+NS        F  M R  +  +  TYPF+ K+ +  S L
Sbjct: 74  FNQVQEPNVHLCNSLIRAHAQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWL 133

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--TRGAFKVFDETPEKNKSESVLLWN 203
            + + +H  I K G+  D +V   L D Y + G    R A K+F++  E++     + WN
Sbjct: 134 PVVKMMHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERD----TVSWN 189

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
            ++ G  K G LR A  LF  MP++++ SW +++DG+ R  ++ KA ELFE+MPE+  VS
Sbjct: 190 SMLGGLVKAGELRDARRLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPERNTVS 249

Query: 264 WTAMINGFSQNGEAEKALAMF---------------------------------FQMLDA 290
           W+ M+ G+S+ G+ E A  MF                                  QM+ +
Sbjct: 250 WSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVAS 309

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G++ +   V+S L+AC + G L  G+R+H+ +  ++ G    +  AL+DMYAKCGN++ A
Sbjct: 310 GLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKA 369

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             VF +  +KDL++W  M+ GL +HG  ++AI+ F +M   G  PD   F+A+L +C ++
Sbjct: 370 FDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHA 429

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS----------- 459
           G +   +++F SM   Y + P V+H+  +V+LL RVG+  +  +  Q             
Sbjct: 430 GLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGA 489

Query: 460 -----------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                               L++L P  P +Y LLSNIYAA   W+ VA +R+ M+   +
Sbjct: 490 LLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGV 549

Query: 503 KKDPGWSYIEVNGHVHRF 520
           +K  G S +E+   +H F
Sbjct: 550 EKPSGASSVELEDGIHEF 567


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 201/661 (30%), Positives = 313/661 (47%), Gaps = 78/661 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IHA +I     +   +   LI+       I  A  +FD    ++   +N +I G  EN
Sbjct: 218 KEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDRISWNAMISGYFEN 277

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M  LSV P+ +T   V+ +   L    LGRG+H  +VKS    D  + 
Sbjct: 278 GGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMN 337

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--------------------- 206
             L  MY  LG+   A  VF     + +S+ V+ W  +I                     
Sbjct: 338 NSLIQMYSSLGRLEEAETVF----SRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMEL 393

Query: 207 --------------NGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKK 248
                         + C+ IG+L   + L  +  K  + S V    SLID + +   +  
Sbjct: 394 EGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDN 453

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F  +  K VVSWT++I G   N  + +AL +FF+ +   ++ N  T++S LSACA+
Sbjct: 454 ALEVFRNISGKNVVSWTSLILGLRINNRSFEAL-LFFRQMKESMKPNSVTLISVLSACAR 512

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL  G  +H +      G  G +  A++DMY +CG    A   F   K KD+  W  +
Sbjct: 513 IGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQFNSQK-KDVTAWNIL 571

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           + G A  G+ + A++ F KM+     PD   F+++L AC  SG V   L +F+ M+  Y 
Sbjct: 572 LTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYN 631

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SF 460
           + P++KH+  VV++L R GQ    Y   Q+                            + 
Sbjct: 632 LTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNACRIHRNVELGEIAA 691

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            ++ +   K    Y+LL N+YA  G W  V++VR+LM+ R +  DPG S++E+ G VH F
Sbjct: 692 KRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADPGCSWVEIKGKVHAF 751

Query: 521 EAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
            +G   H  +KEI+  L+   +  +E G+          I+  + +    HSE+ A+AFG
Sbjct: 752 LSGDNSHSQSKEINGVLDGFCSKMKENGFGNLKSSFTSEIESSRADIFCGHSERQAIAFG 811

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRD--Y 635
           LI T PG  I + K L +C  CH+++K+ S I +REI +RD   +H+FKDG CSC D  Y
Sbjct: 812 LINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEYHHFKDGVCSCGDEGY 871

Query: 636 W 636
           W
Sbjct: 872 W 872



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 185/365 (50%), Gaps = 44/365 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F   + +++  +NVL+ G A+   F   ++ +  ML   +RPN  T+P V K+ A 
Sbjct: 151 AWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNVYTFPSVLKTCAG 210

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +S ++ G+ +H  +++ G E D  V   L  MYV+ G    A  +FD+ P++++    + 
Sbjct: 211 VSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLFDKMPKRDR----IS 266

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPK----------KNVASWVSLID---------GFMR 242
           WN +I+G  + G   + +ELF MM +            VAS   L+D         G++ 
Sbjct: 267 WNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGRGVHGYVV 326

Query: 243 K--------------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           K                    G L++A  +F +M  K VVSWTAMI     +    KA+ 
Sbjct: 327 KSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHKLPFKAVE 386

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            +  M   G+  ++ T+VS LSACA +G L+ G+R+H             +  +L+DMY+
Sbjct: 387 TYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSNSLIDMYS 446

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           KC  ++ A  VF     K++++WT++I GL I+ R  +A+ +F++M  S  +P+    ++
Sbjct: 447 KCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKES-MKPNSVTLIS 505

Query: 403 ILTAC 407
           +L+AC
Sbjct: 506 VLSAC 510



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 152/333 (45%), Gaps = 48/333 (14%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---- 225
           L  M+V+ G    A+ VF +  E++    V  WNVL+ G +K G   +A+ L+  M    
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSERD----VFSWNVLVGGYAKAGCFDEALNLYHRMLWAE 193

Query: 226 PKKNVASWVS-----------------------------------LIDGFMRKGDLKKAG 250
            + NV ++ S                                   LI  +++ GD+  A 
Sbjct: 194 IRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNAR 253

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF++MP++  +SW AMI+G+ +NG   + L +F  M +  V  +  T+ +  SAC  + 
Sbjct: 254 MLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLD 313

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
               G  VH Y+  ++FG   ++  +L+ MY+  G +E A  VF   + KD+++WTAMI 
Sbjct: 314 NERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIA 373

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
            L  H    +A++ +K M   G  PD    +++L+AC   G + L +        +  I+
Sbjct: 374 SLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRL-----HEIAIK 428

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
             +  H +V N L  +    +   N+   F  +
Sbjct: 429 TGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNI 461



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 155/393 (39%), Gaps = 49/393 (12%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           IT T + S     ++ +  R +H  ++         +   LI   S    ++ A ++F  
Sbjct: 300 ITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSR 359

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              K++  +  +I  L  +      +  +  M    + P+ +T   V  + A +  L LG
Sbjct: 360 MESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLG 419

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN-------------- 194
             LH + +K+G+     V   L DMY +      A +VF     KN              
Sbjct: 420 IRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRIN 479

Query: 195 -----------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI 237
                            K  SV L +VL + C++IG L +  E+     +  V       
Sbjct: 480 NRSFEALLFFRQMKESMKPNSVTLISVL-SACARIGALMRGKEIHAHALRTGVG-----F 533

Query: 238 DGFMRKGDLKKAGELFEQMP--------EKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           DGF+    L        ++P        +K V +W  ++ G++Q G+A+ A+ +F +ML+
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLE 593

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI 347
             +  ++ T +S L AC+K G +  G+   N +  N + L   +     +VD+  + G +
Sbjct: 594 LEIHPDEITFISLLCACSKSGMVTEGLEYFNIMK-NKYNLTPNLKHYACVVDILGRAGQL 652

Query: 348 EAA-SLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           + A   +       D   W A++    IH   E
Sbjct: 653 DDAYDFIQDMPIRPDAAIWGALLNACRIHRNVE 685



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 69/133 (51%)

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           G  E+A+     ML+  +   +   ++ L  C    A + G RV+  +S +   L   +G
Sbjct: 76  GNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLG 135

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+ M+ + GN+  A  VFG+  E+D+ +W  ++ G A  G +++A+  + +M+++   
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 395 PDGTVFLAILTAC 407
           P+   F ++L  C
Sbjct: 196 PNVYTFPSVLKTC 208


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 193/616 (31%), Positives = 309/616 (50%), Gaps = 85/616 (13%)

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK 157
           N LI+ L +    +  I     +L     P++ TY  +       S LS    +H  I+ 
Sbjct: 50  NQLIQSLCKEGKLKQAIR----VLSQESSPSQQTYELLILCCGHRSSLSDALRVHRHILD 105

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY--- 214
           +G + D F+   L  MY  LG    A KVFD+T    +  ++ +WN L    +  G+   
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT----RKRTIYVWNALFRALTLAGHGEE 161

Query: 215 ------------------------------------LRKAVELFGMMPKKNVASWV---- 234
                                               L K  E+   + ++  +S V    
Sbjct: 162 VLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMT 221

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGV 292
           +L+D + R G +  A  +F  MP + VVSW+AMI  +++NG+A +AL  F +M+      
Sbjct: 222 TLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDS 281

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
             N  T+VS L ACA + ALE G  +H YI          + +ALV MY +CG +E    
Sbjct: 282 SPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQR 341

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF    ++D+++W ++I    +HG  ++AIQ F++M+ +G  P    F+++L AC + G 
Sbjct: 342 VFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGL 401

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT----------- 461
           V+     F++M  D+ I+P ++H+  +V+LL R  +  +  +  Q+  T           
Sbjct: 402 VEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLL 461

Query: 462 -----------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                            +L  L+PK+  +YVLL++IYA    W +V RV+ L++ R ++K
Sbjct: 462 GSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQK 521

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EE 561
            PG  ++EV   ++ F +    + L ++IH+ L  +    +E+GY+P T+ VL+ ++ EE
Sbjct: 522 LPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEE 581

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           KE  +  HSEKLALAFGLI T+ G  I+I K L +C DCH   K+ SK  ++EI++RD  
Sbjct: 582 KERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVN 641

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH FK+G CSC DYW
Sbjct: 642 RFHRFKNGVCSCGDYW 657



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/437 (24%), Positives = 187/437 (42%), Gaps = 56/437 (12%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           PS    E  I+   H S+ +  LR +H  I+ +       + T+LI   S   S+DYA  
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALR-VHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARK 133

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK----SVA 140
           +FD    + ++++N L R L    H +  +  +  M R+ V  +R TY +V K    S  
Sbjct: 134 VFDKTRKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASEC 193

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           +++ L  G+ +H  + + G     ++   L DMY + G    A  VF   P +N    V+
Sbjct: 194 TVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRN----VV 249

Query: 201 LWNVLI-----NG--------------------------------CSKIGYLRKAVELFG 223
            W+ +I     NG                                C+ +  L +   + G
Sbjct: 250 SWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHG 309

Query: 224 MMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
            + ++ + S + +I   +    R G L+    +F++M ++ VVSW ++I+ +  +G  +K
Sbjct: 310 YILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKK 369

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
           A+ +F +ML  G      T VS L AC+  G +E G R+   +   D G+K  I     +
Sbjct: 370 AIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETM-WRDHGIKPQIEHYACM 428

Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           VD+  +   + EAA +V     E     W +++    IHG  E A +  +++     EP 
Sbjct: 429 VDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLF--ALEPK 486

Query: 397 GTVFLAILTACWYSGQV 413
                 +L   +   Q+
Sbjct: 487 NAGNYVLLADIYAEAQM 503



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/146 (23%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           +S   +I    + G+ ++A+ +  Q      +  +  ++     C    +L   +RVH +
Sbjct: 47  ISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLIL----CCGHRSSLSDALRVHRH 102

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  N       + T L+ MY+  G+++ A  VF +T+++ +  W A+   L + G  E+ 
Sbjct: 103 ILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEV 162

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           +  + KM   G E D   +  +L AC
Sbjct: 163 LGLYWKMNRIGVESDRFTYTYVLKAC 188


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 198/618 (32%), Positives = 305/618 (49%), Gaps = 114/618 (18%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFDE 189
           Y F+ +S A  S L +G  LH  I+ +G+    + F+   L   Y   G    A KVFDE
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 190 TPEKNK-----------------SESVLLWNV----------------LINGCSKIG--- 213
            P  +K                 S+  LL  V                L  GC+++G   
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 214 --------------------------------YLRKAVELFGMMPKKNVASWVSLIDGFM 241
                                            + +A  +F  M  ++V SW  ++DG +
Sbjct: 136 VGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDGVI 195

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVV 300
           R   ++    +F++MPE+  V+WT MI G+  +G  +++ A+  +M+ D  +  N  T+ 
Sbjct: 196 RSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVTLC 255

Query: 301 SALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           S L+AC++ G L  G  VH Y +   +  L   +GTA+VDMYAKCG I  A   F +  +
Sbjct: 256 SILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQ 315

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           +++++W AM+ GLA+HG    A+  F + M+   +PD   F ++L+AC +SG V     +
Sbjct: 316 RNVVSWNAMLSGLAMHGLGRAALDIFPQ-MFKEAKPDDVTFTSVLSACSHSGLVDQGCFY 374

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------------------------- 452
           F ++   Y I P V+H+  +V+LL R G+  +                            
Sbjct: 375 FGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIHG 434

Query: 453 -YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
             Q  ++   +L+QL P++   ++LLSN+YA  G+      +R ++++R IKK PG S I
Sbjct: 435 KLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSSI 494

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMP--------GTEWVLHNI--K 559
            V G VH+F AG   H   +E+++ L++++   R  GY P        G + +  ++  +
Sbjct: 495 HVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVEQ 554

Query: 560 EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           EEKE+AL  HSEKLA+ FGLI T PG  + I K L IC DCHS +K  SKI  REIV+RD
Sbjct: 555 EEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIRD 614

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH FK+G+CSC DYW
Sbjct: 615 RNRFHCFKEGSCSCCDYW 632


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 178/548 (32%), Positives = 281/548 (51%), Gaps = 66/548 (12%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           +S +H   +  Q++Q+HAQI+  NL     +  +LIS+ SL + +  A + F+     N+
Sbjct: 24  LSDLHKCTNLNQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNV 83

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           H++N +IR  + NS      + F  M R     +  T+PF+ K       L +   +H  
Sbjct: 84  HLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQ 143

Query: 155 IVKSGVEYDAFVRVHLAD---------------MYVQLGKTRG----------------- 182
           I K G   D FV   L D               ++V +G  R                  
Sbjct: 144 IEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLY 203

Query: 183 --AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
             A KVFDE PEK+     + WN +++G  K+G +  A +LF  MP++NV SW +++ G+
Sbjct: 204 EEARKVFDEMPEKDG----ISWNTMLDGYVKVGKMDDAFKLFDEMPERNVVSWSTMVLGY 259

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            + GD++ A  LF++MP K +VSWT +++GF++ G A +A+++F QM  A ++ ++ TV+
Sbjct: 260 CKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVM 319

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L+ACA+ G L  G ++H  I  N+F     I  ALVDMYAKCG +  A  VF + K K
Sbjct: 320 SILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDVFNDIKNK 379

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D+++W AM+ GLA+HG   +A++ FK+M   G  P+    + +L AC ++G +   + +F
Sbjct: 380 DVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAGLIDDGIRYF 439

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------------------- 459
            +M  DY + P V+H+  +V+LL R G+  +  +  +N                      
Sbjct: 440 STMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPMAPNAIIWGTLLGACRMHNA 499

Query: 460 -------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                     L++L+P    ++ +LSNIYAA G W  VA  R  M+    KK  G S IE
Sbjct: 500 VELAREVLDHLVELEPTDSGNFSMLSNIYAAAGDWNCVANTRLRMRSIGTKKPSGASSIE 559

Query: 513 VNGHVHRF 520
           VN  VH F
Sbjct: 560 VNNEVHEF 567


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 196/579 (33%), Positives = 293/579 (50%), Gaps = 77/579 (13%)

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
           R+ + F++    S +L    R +H  +  S    DAF+   L  +Y + G    A KVFD
Sbjct: 52  RVYHTFITACAQSKNLED-ARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFD 110

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------- 227
           E   K+    ++ W  LI G ++     +A+ L   M K                     
Sbjct: 111 EMRRKD----MVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHA 166

Query: 228 ------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                             ++V    +L+D + R G +  A  +F+++  K  VSW A+I+
Sbjct: 167 DSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALIS 226

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           GF++ G+ E AL  F +ML  G  A  FT  S  S+ A++GALE G  VH ++  +   +
Sbjct: 227 GFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKM 286

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
               G  L+DMYAK G++  A  VF    +KDL+TW  M+   A +G  ++A+ +F++M 
Sbjct: 287 TAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMR 346

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-- 447
            SG   +   FL ILTAC + G VK    +F+ M+ +Y +EP + H   VV LL R G  
Sbjct: 347 KSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMK-EYDLEPEIDHFVTVVALLGRAGLL 405

Query: 448 -----------------------QDSQGYQNS---QNSFTKLLQLKPKHPSSYVLLSNIY 481
                                     + ++N+   Q +   + +L P      VLL NIY
Sbjct: 406 NFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIY 465

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A+ G+W   ARVR +M+   +KK+P  S++E+   VH F A    H  A+EI+     I 
Sbjct: 466 ASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVANDDTHPRAEEIYKMWGQIS 525

Query: 540 AGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              R++GY+P  ++VL  + +++ EA L  HSEKLALAF LI+   G TI+I+K + ICG
Sbjct: 526 KKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFALIEMPAGATIRIMKNIRICG 585

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCHS  KY SK+  REIV+RDT RFH+F +G+CSC DYW
Sbjct: 586 DCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 162/391 (41%), Gaps = 45/391 (11%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P+  +  T I +   S N  +  R++HA +        + +   LI       S+  A  
Sbjct: 49  PTPRVYHTFITACAQSKN-LEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARK 107

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    K++  +  LI G A+N   +  I     ML+   +PN  T+  + K+  + + 
Sbjct: 108 VFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHAD 167

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             +GR +H L VK     D +V   L DMY + G    A  VFD+   KN     + WN 
Sbjct: 168 SGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNG----VSWNA 223

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----------------------WV-------- 234
           LI+G ++ G    A+  F  M +    +                      WV        
Sbjct: 224 LISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSR 283

Query: 235 ---------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    +L+D + + G +  A ++F+++ +K +V+W  M+  F+Q G  ++A++ F 
Sbjct: 284 QKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFE 343

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M  +G+  N  T +  L+AC+  G ++ G R    +   D   +      +V +  + G
Sbjct: 344 EMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAG 403

Query: 346 NIE-AASLVFGETKEKDLLTWTAMIWGLAIH 375
            +  A   +F    E     W A++    +H
Sbjct: 404 LLNFALVFIFKMPIEPTAAVWGALLAACRMH 434



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 140/353 (39%), Gaps = 37/353 (10%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K   KP N  T   ++    +   +   RQIHA  +  +      + + L+   +    
Sbjct: 144 LKGRFKP-NGFTFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGM 202

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A ++FD    KN   +N LI G A     ++ +  F  MLR        TY  V  S
Sbjct: 203 MDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSS 262

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           +A L  L  G+ +H  ++KS  +  AF    L DMY + G    A KVFD   +K+    
Sbjct: 263 IARLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKD---- 318

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFE 254
           ++ WN ++   ++ G  ++AV  F  M K     N  +++ ++      G +K+    FE
Sbjct: 319 LVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE 378

Query: 255 QMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV- 309
            M     E  +  +  ++    + G    AL   F+M               +   A V 
Sbjct: 379 MMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKM--------------PIEPTAAVW 424

Query: 310 GALEAGVRVHNYISCNDFGL---------KGAIGTALVDMYAKCGNIEAASLV 353
           GAL A  R+H       F                  L ++YA  G  +AA+ V
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARV 477



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%)

Query: 277 AEKALAMFFQMLDAGVRANDFTVV-SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
           A  A+     +LDAG  A    V  + ++ACA+   LE   +VH +++ + F     +  
Sbjct: 31  AASAVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDN 90

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           +L+ +Y KCG++  A  VF E + KD+++WT++I G A +   E+AI     M+    +P
Sbjct: 91  SLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKP 150

Query: 396 DGTVFLAILTA 406
           +G  F ++L A
Sbjct: 151 NGFTFASLLKA 161


>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 600

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/568 (30%), Positives = 305/568 (53%), Gaps = 36/568 (6%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           ++P +       PS    +  +++ I + ++  +L  + A +I  N      +  Q IS+
Sbjct: 21  VSPPSISMPLQPPSRPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISA 80

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLT 131
           +    S+ Y +  F      N+ ++N +I+G     +    +  +V ML  S V P   T
Sbjct: 81  SFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYT 140

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  + K+   +  + LG+ +HC I K G E   FV+  L D Y +L     A KVFDE  
Sbjct: 141 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 200

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
           E++       W  +++  +++G +  A +LF  MP++N A+W ++IDG+ R G+++ A  
Sbjct: 201 ERD----AFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMIDGYTRLGNVESAEL 256

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF QMP K ++SWT MI  +SQN + + ALA++ +M   G+  ++ T+ +  SACA +GA
Sbjct: 257 LFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 316

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           LE G  +H+Y+      L   IG+ALVDMYAKCG+++ + L+F +  +K+L  W A+I G
Sbjct: 317 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 376

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           LA+HG  E+A++ F  M      P+G  F++IL+AC ++G V    + F SM  DY I P
Sbjct: 377 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 436

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQ---------NS-------------------QNSFTKL 463
            ++H+  +V++LS+ G  ++  +         NS                   +++  +L
Sbjct: 437 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 496

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI-KKDPGWSYIEVNGHVHRFEA 522
           + L+P +   Y LL ++YA E  W +VA +R++M+ + + KK PG S+IE+ G +H+F A
Sbjct: 497 MILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSA 556

Query: 523 GG--HKLAKEIHSKLEDIMAGAREQGYM 548
               H  + +I+  L ++    +  GY+
Sbjct: 557 SADSHPDSDKIYFILTELDGQLKLAGYI 584


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  305 bits (782), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 176/559 (31%), Positives = 294/559 (52%), Gaps = 75/559 (13%)

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           R +H  I  +G   +  V   L  MYV+ G    A ++FD   +++       W+V++ G
Sbjct: 70  RQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYS----WSVIVGG 125

Query: 209 CSKIGYLRKAVELFGMM-----PKKNVASWV----------------------------- 234
            +K+G       +F  +     P  + ++ V                             
Sbjct: 126 YAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYG 185

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                +L+D + R   ++ A ++F +M ++ + +WT MI   +++G   ++L  F +M +
Sbjct: 186 HFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRN 245

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G+  +   +V+ + ACAK+GA+     +H YI+   + L   +GTA++DMYAKCG++E+
Sbjct: 246 QGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVES 305

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  +F   + ++++TW+AMI     HG+ E+A++ F  M+ SG  P+   F+++L AC +
Sbjct: 306 ARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSH 365

Query: 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN-------------- 455
           +G ++    FF SM  +Y + P VKH+T +V+LL R G+  +  +               
Sbjct: 366 AGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWG 425

Query: 456 --------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501
                         ++     LL+L+ + P  YVLLSNIYA  G+W+D+A+ R LM +  
Sbjct: 426 ALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGG 485

Query: 502 IKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK 559
           ++K PG ++IEV   +++F  G   H  + EI+  L+ +       GY P T  VL+++ 
Sbjct: 486 LRKIPGRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVD 545

Query: 560 EE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLR 618
           EE K+  L  HSEKLA+AFGL+    G  I+I K L +CGDCH+  K+ S I Q+ I++R
Sbjct: 546 EEVKQGLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVR 605

Query: 619 DT-RFHYFKDGTCSCRDYW 636
           D  RFH+FK+G CSCRDYW
Sbjct: 606 DAKRFHHFKEGVCSCRDYW 624



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 194/400 (48%), Gaps = 39/400 (9%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           S  +  Q+RQ+HAQI  +  F +  +  +L+       +++ A  +FD  + ++ + ++V
Sbjct: 62  SCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSV 121

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           ++ G A+  +F SC   F  +LR     +  + P V ++   L  L  GR +HC+ +K G
Sbjct: 122 IVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCG 181

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS----------------ESVLLWN 203
           ++Y  FV   L DMY +      A ++F +  +++ +                ES++ ++
Sbjct: 182 LDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFD 241

Query: 204 VLIN---------------GCSKIGYLRKAVELF----GMMPKKNVASWVSLIDGFMRKG 244
            + N                C+K+G + KA  +     G     +V    ++ID + + G
Sbjct: 242 RMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCG 301

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
            ++ A  +F++M  + V++W+AMI  +  +G+ EKAL +F  ML +G+  N  T VS L 
Sbjct: 302 SVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLY 361

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKD 361
           AC+  G +E G R  + +  +++G+   +   T +VD+  + G + EA  ++ G   EKD
Sbjct: 362 ACSHAGLIEEGQRFFSSMW-DEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKD 420

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            + W A++    IH   + A +  + ++   ++  G   L
Sbjct: 421 EVLWGALLGACRIHRHLDLAERVARSLLKLQSQKPGHYVL 460



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 13/275 (4%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           S  P ++ +   +I         K  R IH   +   L     +   L+   +  K ++ 
Sbjct: 145 SGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVED 204

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IF     ++L  + V+I  LAE+      +  F  M    + P+++    V  + A 
Sbjct: 205 AHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAK 264

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  ++  + +H  I  +G   D  +   + DMY + G    A  +FD    +N    V+ 
Sbjct: 265 LGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRN----VIT 320

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQM- 256
           W+ +I      G   KA+ELF MM +     N  ++VSL+      G +++    F  M 
Sbjct: 321 WSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMW 380

Query: 257 PEKGVVS----WTAMINGFSQNGEAEKALAMFFQM 287
            E GV      +T M++   + G  ++AL M   M
Sbjct: 381 DEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGM 415


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 290/578 (50%), Gaps = 80/578 (13%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           D A  +   +  ++  + N LIR LA ++     +  +  +LR    P   T P + KS+
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216

Query: 140 ASLSLLSLGRGL----HCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           A    +   RGL    H   VK G+       +A +RVH                     
Sbjct: 217 ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVH--------------------- 255

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                                +G L  A+ L       + +++ +LI  + R G +  A 
Sbjct: 256 ------------------AGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDAR 297

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF++MP +  VSW+AM+NG+ Q G+  +AL +F +M   GVR +D  +V  L+ACA++G
Sbjct: 298 ALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLG 357

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            LE G  VH Y+  N+  +   +GTALVDMYAKCG ++ A  VF   KEK++L WT MI 
Sbjct: 358 VLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIK 417

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           GLA+HGR  +A++ F +M   G +PD   F+  L AC ++G V      FDSM   Y I+
Sbjct: 418 GLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIK 477

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------------------- 462
           P ++H+  +V+LL+R G  ++  +  +    K                            
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKH 537

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
            ++L+P    +YVLL NIYAA GR      +R LM+ + + K PG S +E+ G +H+F  
Sbjct: 538 WIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIV 597

Query: 523 G--GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFG 578
           G   H   +EI SK ++I +  R E+GY+P  + VL +I +EEKE AL  HSEK+A+AF 
Sbjct: 598 GDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFA 657

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           LI T+    I+IVK L +C DCH + K  SK+    +V
Sbjct: 658 LINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 30/295 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI++ +    +  A ++FD    +N   ++ ++ G  +    +  +  F  M    VRP+
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
                 V  + A L +L  G+ +H  +  + +    F+   L DMY + G+ + A +VF 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
              EKN    VL W  +I G +  G   +A+ELF  M +  V     +++  +      G
Sbjct: 403 VMKEKN----VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458

Query: 245 DLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
            + K  ELF+ M  K      +  +  M++  ++NG   +A  M  +M            
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM------------ 506

Query: 300 VSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTAL--VDMYAKCGNIEAAS 351
              +   A + GAL AG R H  +   ++ +K  I         Y   GNI AAS
Sbjct: 507 --PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAAS 559



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 17/226 (7%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q + +H  +  +N+  +  + T L+   +    +  A+ +F     KN+  +  +I+GL
Sbjct: 360 EQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGL 419

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYD 163
           A +      +  F  M RL V+P+ + +     +     L+  GR L   ++ K G++  
Sbjct: 420 AMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPK 479

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL-- 221
                 + D+  + G    A ++ ++ P K  +   L+W  L+ GC       K VEL  
Sbjct: 480 IEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA---LIWGALMAGCR----FHKNVELAE 532

Query: 222 ------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                   + P K+  ++V L + +   G    A E+   M EKGV
Sbjct: 533 YVVKHWIELEPDKS-GAYVLLGNIYAASGRHASAREIRHLMREKGV 577


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 202/617 (32%), Positives = 302/617 (48%), Gaps = 83/617 (13%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP--FVSKSVASLSLLSLGRGLHCL 154
           F   I G A+++   + +S F  MLR+ +RPN  T+P  F + + A     ++G  +H L
Sbjct: 79  FTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHAL 138

Query: 155 IVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI------- 206
            ++ G +  D FV     DMY + G    A ++F+E P +N    V+ WN ++       
Sbjct: 139 ALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRN----VIAWNAVMTNAVIDG 194

Query: 207 ----------------------------NGCSKIGYLRKAVELFGMMP----KKNVASWV 234
                                       N C+   +L    +  G +       +V+   
Sbjct: 195 RPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSN 254

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +++D + +     KA  +F+ M  +  VSW +MI  ++Q+G  E ALA++    + G   
Sbjct: 255 AMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMGARNTGEEP 314

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
            DF V S L+ CA +  L  G  +H     SC D  +   + +ALVDMY KCG +E A  
Sbjct: 315 TDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANI--FVASALVDMYGKCGGVEDAEQ 372

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSG 411
           VF +  E++L+TW AMI G A  G  + A+  F  M+ SG T P+    + ++TAC   G
Sbjct: 373 VFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGG 432

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------- 458
             K     FD+MR  + +EP  +H+  VV+LL R G + + Y+  Q              
Sbjct: 433 LTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGAL 492

Query: 459 ---------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                          +  KL +L P+   ++VLLSN+ A+ GRW +   VR  M+   IK
Sbjct: 493 LGACKMHGKTELGRIASEKLFELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIK 552

Query: 504 KDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE 561
           K+PG S+I     VH F A    H    EI + L  +    +  GYMP T++ L++++EE
Sbjct: 553 KEPGCSWITWKNVVHVFYAKDTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEE 612

Query: 562 KEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
           ++E  +  HSEKLALAFGLI   P   I+I K L IC DCH   K+ S I  REI++RD 
Sbjct: 613 EKETEVFQHSEKLALAFGLIHIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDN 672

Query: 620 TRFHYFKDGTCSCRDYW 636
            RFHYFK   CSC+DYW
Sbjct: 673 NRFHYFKQFECSCKDYW 689



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 15/165 (9%)

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL--SACAKVGALEAGVRV 318
           VVS+TA I+G +Q+     AL+ F  ML  G+R NDFT  SA   +ACA       G ++
Sbjct: 76  VVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQI 135

Query: 319 H------NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
           H       Y+  + F     +  A +DMY K G +  A  +F E   ++++ W A++   
Sbjct: 136 HALALRFGYLPGDPF-----VSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNA 190

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            I GR  +  + +  +  +G  P+     A   AC  +G + L+L
Sbjct: 191 VIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNAC--AGAMFLSL 233



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 118/277 (42%), Gaps = 17/277 (6%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q H  ++         ++  ++      +    A ++FD    +N   +  +I   A++ 
Sbjct: 236 QFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHG 295

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             +  ++ ++        P       V  + A L  L+ GR LH + V+S ++ + FV  
Sbjct: 296 AEEDALAVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRSCIDANIFVAS 355

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK- 227
            L DMY + G    A +VF + PE+N    ++ WN +I G + IG  + A+ +F  M + 
Sbjct: 356 ALVDMYGKCGGVEDAEQVFLDMPERN----LVTWNAMIGGYAHIGDAQNALAVFDAMIRS 411

Query: 228 ----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAE 278
                N  + V++I    R G  K   ELF+ M E+  V      +  +++   + G  E
Sbjct: 412 GGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEE 471

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +A  +  +M    +R +     + L AC   G  E G
Sbjct: 472 RAYEIIQRM---PMRPSISVWGALLGACKMHGKTELG 505


>gi|15242278|ref|NP_197038.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180838|sp|Q9LXE8.1|PP386_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g15340, mitochondrial; Flags: Precursor
 gi|7671503|emb|CAB89344.1| putative protein [Arabidopsis thaliana]
 gi|332004768|gb|AED92151.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/481 (36%), Positives = 265/481 (55%), Gaps = 44/481 (9%)

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257
           SV + N L++   K G + +   +F  + +K+V SW  ++D  ++   L++  E+F +MP
Sbjct: 145 SVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEMP 204

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGV 316
           E+  V+WT M+ G+   G   + L +  +M+   G   N  T+ S LSACA+ G L  G 
Sbjct: 205 ERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVGR 264

Query: 317 RVHNYISCNDFGLKGA-------IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            VH Y    +  +          +GTALVDMYAKCGNI+++  VF   ++++++TW A+ 
Sbjct: 265 WVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNALF 324

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
            GLA+HG+    I  F +M+    +PD   F A+L+AC +SG V      F S+RF Y +
Sbjct: 325 SGLAMHGKGRMVIDMFPQMIRE-VKPDDLTFTAVLSACSHSGIVDEGWRCFHSLRF-YGL 382

Query: 430 EPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQNSFT 461
           EP V H+  +V+LL R G   +                              + ++    
Sbjct: 383 EPKVDHYACMVDLLGRAGLIEEAEILMREMPVPPNEVVLGSLLGSCSVHGKVEIAERIKR 442

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
           +L+Q+ P +    +L+SN+Y AEGR      +R  +++R I+K PG S I VN  VHRF 
Sbjct: 443 ELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFS 502

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK---EEKEEALGCHSEKLALA 576
           +G   H   KEI+ KL +++   R  GY+P    ++ + +   EEKE+AL CHSEKLA+ 
Sbjct: 503 SGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVC 562

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           FGL++T P T + + K L IC DCHS MK  SK+  REI++RD  RFH FK G+CSC DY
Sbjct: 563 FGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSDY 622

Query: 636 W 636
           W
Sbjct: 623 W 623


>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 535

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 177/529 (33%), Positives = 289/529 (54%), Gaps = 36/529 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH---KSIDYAL 83
           ++ T   I+S    + S  +++Q HA ++   LF  +   ++L++ A+ +   K++ YA 
Sbjct: 5   SSTTPVPILSFTERAKSLLEIQQAHAFMLKTGLFHDTFSASKLVAFAATNPEPKTVSYAH 64

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           SI +     N    N +IR  A +S  +  ++ F  ML   V P++ ++ FV K+ A+  
Sbjct: 65  SILNRIESPNGFTHNSVIRAYANSSTPEIALTVFREMLLGPVFPDKYSFTFVLKACAAFC 124

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               GR +H L +KS +  D FV   L ++Y + G    A KV D  P ++     + WN
Sbjct: 125 GFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFEIARKVLDRMPVRD----AVSWN 180

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
            L++     G + +A  LF  M ++NV SW  +I G+   G +K+A E+F+ MP K VVS
Sbjct: 181 SLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGLVKEAREVFDSMPVKDVVS 240

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           W AM+  ++  G   + L +F  MLD +  R + FT+V+ LSACA +G+L  G  VH YI
Sbjct: 241 WNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLSACASLGSLSQGEWVHVYI 300

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
             +   ++G + TALVDMY+KCG I+ A  VF +T ++D+ TW ++I GL++HG  + A+
Sbjct: 301 DKHGIEIEGFVATALVDMYSKCGKIDKALEVFRDTSKRDVSTWNSIITGLSVHGLGKDAL 360

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
           + F +M+Y G +P+G  F+ +L+AC + G +  A   F+ M   Y IEP+++H+  +V+L
Sbjct: 361 EIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDL 420

Query: 443 LSRVGQDSQG----------------------------YQNSQNSFTKLLQLKPKHPSSY 474
           L R+G+  +                              + ++    +LL+  P+  S Y
Sbjct: 421 LGRMGKFEEAEELVNEVPADEASILLESLLGACKRFGKLEQAERIANRLLESNPRESSGY 480

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           V +SN+YA+ GRW +   VR  M+   +KK+PG S IEV+G VH F AG
Sbjct: 481 VQMSNLYASHGRWDEAMEVRGKMRAERVKKNPGCSMIEVDGVVHEFLAG 529



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 5/210 (2%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           S+ +P +  T  +++S   S  S  Q   +H  I  H +     + T L+   S    ID
Sbjct: 268 SAERP-DGFTLVNVLSACASLGSLSQGEWVHVYIDKHGIEIEGFVATALVDMYSKCGKID 326

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            AL +F   + +++  +N +I GL+ +   +  +  F  M+    +PN +T+  V  +  
Sbjct: 327 KALEVFRDTSKRDVSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACN 386

Query: 141 SLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
            + LL   R L  ++    G+E        + D+  ++GK   A ++ +E P     E+ 
Sbjct: 387 HVGLLDQARKLFEMMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVP---ADEAS 443

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           +L   L+  C + G L +A  +   + + N
Sbjct: 444 ILLESLLGACKRFGKLEQAERIANRLLESN 473


>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g06145-like [Cucumis sativus]
          Length = 697

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/568 (30%), Positives = 305/568 (53%), Gaps = 36/568 (6%)

Query: 13  IAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS 72
           ++P +       PS    +  +++ I + ++  +L  + A +I  N      +  Q IS+
Sbjct: 118 VSPPSISMPLQPPSCPSFKQTLLNRIKNCSTINELHGLCASMIKTNAIQDCFLVHQFISA 177

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLT 131
           +    S+ Y +  F      N+ ++N +I+G     +    +  +V ML  S V P   T
Sbjct: 178 SFALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYCGYPFRALQCYVHMLEESNVLPTSYT 237

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           +  + K+   +  + LG+ +HC I K G E   FV+  L D Y +L     A KVFDE  
Sbjct: 238 FSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDFYSKLEILSEARKVFDEMC 297

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
           E++       W  +++  +++G +  A +LF  MP++N A+W ++IDG+ R G+++ A  
Sbjct: 298 ERD----AFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMIDGYARLGNVESAEL 353

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           LF QMP K ++SWT MI  +SQN + + ALA++ +M   G+  ++ T+ +  SACA +GA
Sbjct: 354 LFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEVTMSTVASACAHIGA 413

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           LE G  +H+Y+      L   IG+ALVDMYAKCG+++ + L+F +  +K+L  W A+I G
Sbjct: 414 LELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIFFKLTDKNLYCWNAVIEG 473

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           LA+HG  E+A++ F  M      P+G  F++IL+AC ++G V    + F SM  DY I P
Sbjct: 474 LAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVDEGRSRFLSMTRDYDIRP 533

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQ---------NS-------------------QNSFTKL 463
            ++H+  +V++LS+ G  ++  +         NS                   +++  +L
Sbjct: 534 DIRHYGCMVDMLSKSGYLNEALELIKSMEFEPNSIIWGALLNGCKLHGNCEIAEDAVEQL 593

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI-KKDPGWSYIEVNGHVHRFEA 522
           + L+P +   Y LL ++YA E  W +VA +R++M+ + + KK PG S+IE+ G +H+F A
Sbjct: 594 MILEPMNSGHYNLLVSMYAEEKDWMEVAHIRSMMKEKGVEKKYPGSSWIELEGTIHQFSA 653

Query: 523 GG--HKLAKEIHSKLEDIMAGAREQGYM 548
               H  + +I+  L ++    +  GY+
Sbjct: 654 SADSHPDSDKIYFVLTELDGQLKLAGYI 681


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 261/471 (55%), Gaps = 39/471 (8%)

Query: 205  LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
            LI  C+++  LR+   L     K    + V    SL+  +   G  + A ++F++MP +G
Sbjct: 810  LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG 869

Query: 261  --VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
              +VSW +M+N F+ NG   + L +F++ML      + FT+VS L+ACA+ GAL  G RV
Sbjct: 870  RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 929

Query: 319  HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGR 377
            H Y+          +  AL+D+YAKCG++  A  +F E    + +++WT++I GLA +G 
Sbjct: 930  HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 989

Query: 378  YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
             ++A++ F  M      P     + +L AC + G V     +FD M+ DY I P ++H  
Sbjct: 990  GKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLG 1049

Query: 438  VVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPK 469
             +V+LL R G+  + Y                            +  + ++ +L++L P 
Sbjct: 1050 CMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPG 1109

Query: 470  HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
            H   YVLLSN+YAA G W DV  +R  M +  ++K+PG S +E+   V+ F  G   H  
Sbjct: 1110 HSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPE 1169

Query: 528  AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
            +++I+  L +I    R +GY+P T  VL +I+EE KE AL  HSE+LA+AF L+++ PG 
Sbjct: 1170 SEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGI 1229

Query: 587  TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             I+I+K L +CGDCH      SK+  REI++RD +RFH+F+ G CSC+DYW
Sbjct: 1230 PIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/263 (23%), Positives = 111/263 (42%), Gaps = 16/263 (6%)

Query: 92   KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            +NL  +N ++   A N      ++ F  ML +   P+  T   V  + A    L+LGR +
Sbjct: 870  RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 929

Query: 152  HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
            H  + K G+  ++ V   L D+Y + G    A ++F+E        +V+ W  LI G + 
Sbjct: 930  HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM---GLGRTVVSWTSLIVGLAA 986

Query: 212  IGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS---- 263
             G+ ++A+ELF +M ++ +     + V ++      G +      F++M E   +S    
Sbjct: 987  NGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIE 1046

Query: 264  -WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
                M++   + G  E+A      M    +  N     + L +CA    LE G      +
Sbjct: 1047 HLGCMVDLLGRAGRVEEAYDYIITM---PLEPNAVVWRTLLGSCAMHKKLELGKVAWERL 1103

Query: 323  SCNDFGLKGAIGTALVDMYAKCG 345
               D G  G     L ++YA  G
Sbjct: 1104 VELDPGHSGDY-VLLSNLYAAVG 1125


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 167/471 (35%), Positives = 261/471 (55%), Gaps = 39/471 (8%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
           LI  C+++  LR+   L     K    + V    SL+  +   G  + A ++F++MP +G
Sbjct: 122 LIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRG 181

Query: 261 --VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
             +VSW +M+N F+ NG   + L +F++ML      + FT+VS L+ACA+ GAL  G RV
Sbjct: 182 RNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVLTACAEFGALALGRRV 241

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGR 377
           H Y+          +  AL+D+YAKCG++  A  +F E    + +++WT++I GLA +G 
Sbjct: 242 HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 301

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            ++A++ F  M      P     + +L AC + G V     +FD M+ DY I P ++H  
Sbjct: 302 GKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLG 361

Query: 438 VVVNLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPK 469
            +V+LL R G+  + Y                            +  + ++ +L++L P 
Sbjct: 362 CMVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPG 421

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
           H   YVLLSN+YAA G W DV  +R  M +  ++K+PG S +E+   V+ F  G   H  
Sbjct: 422 HSGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPE 481

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
           +++I+  L +I    R +GY+P T  VL +I+EE KE AL  HSE+LA+AF L+++ PG 
Sbjct: 482 SEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGI 541

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            I+I+K L +CGDCH      SK+  REI++RD +RFH+F+ G CSC+DYW
Sbjct: 542 PIRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 126/308 (40%), Gaps = 21/308 (6%)

Query: 23  HKPSNNITETHIIS-LIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKS 78
           H+    + +TH    LI +      LR+   +HA+   +       +   L+        
Sbjct: 107 HRRRLALPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGL 166

Query: 79  IDYALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
            + A  +FD      +NL  +N ++   A N      ++ F  ML +   P+  T   V 
Sbjct: 167 FESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVDFAPDGFTIVSVL 226

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            + A    L+LGR +H  + K G+  ++ V   L D+Y + G    A ++F+E       
Sbjct: 227 TACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEM---GLG 283

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGEL 252
            +V+ W  LI G +  G+ ++A+ELF +M ++ +     + V ++      G +      
Sbjct: 284 RTVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRY 343

Query: 253 FEQMPEKGVVS-----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
           F++M E   +S        M++   + G  E+A      M    +  N     + L +CA
Sbjct: 344 FDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITM---PLEPNAVVWRTLLGSCA 400

Query: 308 KVGALEAG 315
               LE G
Sbjct: 401 MHKKLELG 408


>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/423 (38%), Positives = 246/423 (58%), Gaps = 32/423 (7%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           +  A +LF++MPE+  V+W A+I G++ N +  KA+  F  ML  G + ++ TVV  LSA
Sbjct: 140 ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSA 199

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+ +GA   G  +H +I  N   L   +GTAL+DMYAKCG +     VF E +EK++ TW
Sbjct: 200 CSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTW 259

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +I G A++G+ + A+Q F +M+    +PD   FL +L AC + G V      F SM+ 
Sbjct: 260 NVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQ 319

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS-------------------------- 459
            + ++P ++H+  +V+LL R G   +  +  Q+                           
Sbjct: 320 QFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGE 379

Query: 460 --FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
               +L++L+P +  +YVLLSNIY+ E RW +V ++R +M  R I+K PG S IE+N  V
Sbjct: 380 YIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGIRKVPGCSSIEINNVV 439

Query: 518 HRFEAGGHKLAK--EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLA 574
           + F A   +  +   I+ +L++++   +E GY+ GT+  L++I KEEKE ++  HSEKLA
Sbjct: 440 YEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLA 499

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           LAFGL+ +    T++IVK L IC DCH   K  S + +R IV+RD  RFH+F +G CSCR
Sbjct: 500 LAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCR 559

Query: 634 DYW 636
           DYW
Sbjct: 560 DYW 562



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 49/322 (15%)

Query: 98  NVLIRG-LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           N +IR  L  N H  S +  F  M + S+ P+  T+P V K+ A L    +G+ +H +++
Sbjct: 58  NSMIRTYLDLNKHLNS-LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVI 116

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           + G   D +    L  +Y        A ++FDE PE+N     + WN LI G +      
Sbjct: 117 QMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERN----AVTWNALITGYTHNRKFV 172

Query: 217 KAVELF------GMMPKK----------------NVASWV-----------------SLI 237
           KA++ F      G  P +                N   W+                 +LI
Sbjct: 173 KAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALI 232

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G + +  ++FE++ EK V +W  +I+G++ NG+ + AL  F +ML    + ++ 
Sbjct: 233 DMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEV 292

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVF 354
           T +  L AC   G +  G R         FGL+  I     +VD+  + G +E A  L+ 
Sbjct: 293 TFLGVLCACCHQGLVTEG-RWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 355 GETKEKDLLTWTAMIWGLAIHG 376
             + E D + W A++    +HG
Sbjct: 352 SMSIEPDPIIWRALLCACRVHG 373



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 16/277 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH  +I          +T L+       SI  A  +FD    +N   +N LI G   N
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHN 168

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             F   I  F  ML    +P+  T   V  + + L   + G+ +H  I  + +  + FV 
Sbjct: 169 RKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVG 228

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L DMY + G      KVF+E  EKN    V  WNVLI+G +  G    A++ F  M  
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIREKN----VYTWNVLISGYAMNGQGDAALQAFSRMLM 284

Query: 228 KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAE 278
           +N      +++ ++     +G + +    F  M ++      +  +  M++   + G  E
Sbjct: 285 ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLE 344

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +AL +   M    +  +     + L AC   G  + G
Sbjct: 345 EALELIQSM---SIEPDPIIWRALLCACRVHGNTKLG 378



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVS---WTAMINGFSQNGEAEKALAMFFQMLDA 290
           + LID  + +   +    +F +   +G ++     +MI  +    +   +L +F  M   
Sbjct: 26  MKLIDDSVSRNGFESIARIFSKY--RGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKF 83

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            +  +  T  + L A A++     G  +H  +    F       TALV +Y  C +I  A
Sbjct: 84  SILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDA 143

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
           S +F E  E++ +TW A+I G   + ++ +AI  F+ M+  G +P     + +L+AC + 
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHL 203

Query: 411 G 411
           G
Sbjct: 204 G 204



 Score = 39.7 bits (91), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 34/279 (12%)

Query: 1   MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+  NR    AI     + +     +  T   ++S      +  Q + IH  I  + L
Sbjct: 162 ITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRL 221

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
             +  + T LI   +   ++     +F+    KN++ +NVLI G A N    + +  F  
Sbjct: 222 RLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSR 281

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGR----------GLHCLIVKSGVEYDAFVRVH 169
           ML  + +P+ +T+  V  +     L++ GR          GL   I   G   D   R  
Sbjct: 282 MLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAG 341

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC-----SKIG--YLRKAVELF 222
           L +  ++L ++       +  P        ++W  L+  C     +K+G   +++ +EL 
Sbjct: 342 LLEEALELIQSMS----IEPDP--------IIWRALLCACRVHGNTKLGEYIIKRLIEL- 388

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                 N  ++V L + + R+    + G+L   M  +G+
Sbjct: 389 ---EPNNGENYVLLSNIYSRERRWAEVGKLRGMMNLRGI 424


>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 558

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 179/469 (38%), Positives = 265/469 (56%), Gaps = 40/469 (8%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR----KGDLKKAGELFEQMPEKG 260
           ++  C++   L+  ++L  ++ K    S V + +G +      G L  A ++FE+MPE+ 
Sbjct: 93  VLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFEEMPERD 149

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVH 319
           +VSW++MI  F++NG   +ALA+F +M   G V+ ++  V+S +SA + +G LE G  + 
Sbjct: 150 LVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIR 209

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            +IS N      ++GTALVDM+++CG IE +  VF E  E+++LTWTA+I GLA+HGR  
Sbjct: 210 GFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSA 269

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
           +A++ F +M   G +PD   F  +L AC + G V    + F+S+R +Y +EP  +H+  +
Sbjct: 270 EALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCM 329

Query: 440 VNLLSRVGQDSQ------GYQNSQNSFT----------------------KLLQLKPKHP 471
           V+LL R G  ++      G     NS                        K+ +L   H 
Sbjct: 330 VDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHD 389

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             YVLLSN+Y   GRW + A VR  M+ + I K PG S I VN  +H F AG   H   +
Sbjct: 390 GDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFE 449

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTI 588
            I   L  ++   +  GY P    VL +I+EE KE  LG HSEKLA+AF L+      TI
Sbjct: 450 SIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTI 509

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +++K L IC DCH  MKYAS + +REI++RD  RFH+F  G+CSCRDYW
Sbjct: 510 RVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 172/376 (45%), Gaps = 52/376 (13%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L  +AS   S+ YA SIFD     +   FN +IR  A++S   S +S F  M    V P+
Sbjct: 28  LSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFS-LSLFSKMAMAGVSPD 86

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
             T+PFV K+ A L     G  LH L+ K G + D +V+  L   Y   G    A KVF+
Sbjct: 87  HFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVFE 143

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PKK------------- 228
           E PE++    ++ W+ +I   +K G+  +A+ LF  M       P +             
Sbjct: 144 EMPERD----LVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISIL 199

Query: 229 ---NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
               +  W+                 +L+D F R G ++++  +F++M E+ V++WTA+I
Sbjct: 200 GDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALI 259

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           NG + +G + +AL MF++M + G + +  T    L AC+  G +  G  V   I  N++G
Sbjct: 260 NGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIR-NEYG 318

Query: 329 LKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           ++        +VD+  + G + EA   V G     + + W  ++     H   E A +  
Sbjct: 319 MEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVK 378

Query: 386 KKMMYSGTEPDGTVFL 401
           +K+    +  DG   L
Sbjct: 379 EKINELDSYHDGDYVL 394



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 12/221 (5%)

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M  AGV  + FT    L ACA+   L+ G+ +H+ +    F     +   L+  Y  CG
Sbjct: 77  KMAMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAIL 404
            ++ A  VF E  E+DL++W++MI   A +G   +A+  F++M   GT +PD  + L+++
Sbjct: 134 FLDFALKVFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464
           +A    G ++L   +         +E +V   T +V++ SR G      + S   F    
Sbjct: 194 SAISILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCG----CIEESMRVFD--- 245

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           ++  ++  ++  L N  A  GR  +  R+   M+    + D
Sbjct: 246 EMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPD 286


>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
          Length = 648

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 315/649 (48%), Gaps = 110/649 (16%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQII------LHNLFASSRITTQLISSASLHKSIDYAL- 83
           E HI+SL+        LR  HA +       L   FA S++    +S+ +   +   A  
Sbjct: 67  EAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASS 126

Query: 84  ---SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSV 139
              ++FD         +N LIR L       + ++ +  MLR  S RPN  T  F  K+ 
Sbjct: 127 YARNLFDQIPDPTAFCYNSLIRALPAAGSAPA-LAVYRRMLRAGSPRPNSFTLAFALKAC 185

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A++     GR LH   ++ G+   A         YVQ G                     
Sbjct: 186 AAVPAPGEGRQLHAQALRQGLATSA---------YVQTG--------------------- 215

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            L N L   C ++   R                  ++ DG    GD             K
Sbjct: 216 -LLN-LYAKCEQVALAR------------------TVFDGM--AGD-------------K 240

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            +V+W+AM++G+S+ G   +AL +F +M   GV  ++ T+VS +SACAK GAL+ G  VH
Sbjct: 241 NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVH 300

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            YI      +   + TAL+DMYAKCG IE A  VF    EKD   W+AMI G AIHG  E
Sbjct: 301 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 360

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
            A+  F +M+     P+   F+ +L+AC +SG V+    ++  M+ +  I+PS++++  +
Sbjct: 361 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQ-NLGIKPSMENYGCM 419

Query: 440 VNLLSRVGQDSQGYQ---------NS-------------------QNSFTKLLQLKPKHP 471
           V+LL R G     Y          NS                   +++  +LL+L+P +P
Sbjct: 420 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNP 479

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAK 529
            +YVLLSN+YA+  +W  V+ +R  M+ +++    G S IE+NGH+H F      H   +
Sbjct: 480 ENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIR 539

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTI 588
           EI   L ++    R  G+ P T  VLH++ EE++EA  C HSE+LA+A+GL++T     I
Sbjct: 540 EIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVI 599

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++VK L  C DCH + K  SK   REIV+RD  RFH F  G+CSC+D+W
Sbjct: 600 RVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 648



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 96/240 (40%), Gaps = 6/240 (2%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T   +IS    + +    + +HA I    +     ++T LI   +    I+ A  +F
Sbjct: 276 DEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVF 335

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K+   ++ +I G A +   +  +  F  ML L VRPN +T+  V  + A   L+ 
Sbjct: 336 DAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVE 395

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR    ++   G++        + D+  + G    A+      P    S + ++W  L+
Sbjct: 396 DGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMP---VSPNSVIWRTLL 452

Query: 207 NGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
             C   ++I     A +    +   N  ++V L + +       +   L  +M  K V +
Sbjct: 453 VACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTA 512


>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
 gi|223948835|gb|ACN28501.1| unknown [Zea mays]
          Length = 599

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 211/649 (32%), Positives = 315/649 (48%), Gaps = 110/649 (16%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQII------LHNLFASSRITTQLISSASLHKSIDYAL- 83
           E HI+SL+        LR  HA +       L   FA S++    +S+ +   +   A  
Sbjct: 18  EAHIVSLVRRCPGLLALRSAHAHLTRLRLPRLTAAFALSKLLASCVSAPAPAAAQAAASS 77

Query: 84  ---SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSV 139
              ++FD         +N LIR L       + ++ +  MLR  S RPN  T  F  K+ 
Sbjct: 78  YARNLFDQIPDPTAFCYNSLIRALPAAGSAPA-LAVYRRMLRAGSPRPNSFTLAFALKAC 136

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A++     GR LH   ++ G+   A         YVQ G                     
Sbjct: 137 AAVPAPGEGRQLHAQALRQGLATSA---------YVQTG--------------------- 166

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            L N L   C ++   R                  ++ DG    GD             K
Sbjct: 167 -LLN-LYAKCEQVALAR------------------TVFDGM--AGD-------------K 191

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
            +V+W+AM++G+S+ G   +AL +F +M   GV  ++ T+VS +SACAK GAL+ G  VH
Sbjct: 192 NLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALDLGKWVH 251

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            YI      +   + TAL+DMYAKCG IE A  VF    EKD   W+AMI G AIHG  E
Sbjct: 252 AYIDRKGITVDLELSTALIDMYAKCGLIERARGVFDAMVEKDTKAWSAMIVGFAIHGLVE 311

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
            A+  F +M+     P+   F+ +L+AC +SG V+    ++  M+ +  I+PS++++  +
Sbjct: 312 DALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVEDGRRYWSIMQ-NLGIKPSMENYGCM 370

Query: 440 VNLLSRVGQDSQGYQ---------NS-------------------QNSFTKLLQLKPKHP 471
           V+LL R G     Y          NS                   +++  +LL+L+P +P
Sbjct: 371 VDLLCRSGLLDDAYSFVIGMPVSPNSVIWRTLLVACKSSNRIDIAESATKRLLELEPHNP 430

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAK 529
            +YVLLSN+YA+  +W  V+ +R  M+ +++    G S IE+NGH+H F      H   +
Sbjct: 431 ENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTAIAGRSSIEINGHLHEFVVSDDSHPEIR 490

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTI 588
           EI   L ++    R  G+ P T  VLH++ EE++EA  C HSE+LA+A+GL++T     I
Sbjct: 491 EIRLVLREMADRVRRAGHKPWTAAVLHDVGEEEKEAALCQHSERLAIAYGLLKTRAPHVI 550

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           ++VK L  C DCH + K  SK   REIV+RD  RFH F  G+CSC+D+W
Sbjct: 551 RVVKNLRFCLDCHEVAKIISKAYNREIVVRDRVRFHKFMGGSCSCKDFW 599



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 6/240 (2%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T   +IS    + +    + +HA I    +     ++T LI   +    I+ A  +F
Sbjct: 227 DEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVF 286

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K+   ++ +I G A +   +  +  F  ML L VRPN +T+  V  + A   L+ 
Sbjct: 287 DAMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVLSACAHSGLVE 346

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR    ++   G++        + D+  + G    A+      P    S   ++W  L+
Sbjct: 347 DGRRYWSIMQNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIGMPVSPNS---VIWRTLL 403

Query: 207 NGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
             C   ++I     A +    +   N  ++V L + +       +   L  +M  K V +
Sbjct: 404 VACKSSNRIDIAESATKRLLELEPHNPENYVLLSNLYASNSQWDRVSYLRRKMKGKNVTA 463


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/436 (36%), Positives = 262/436 (60%), Gaps = 32/436 (7%)

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292
           W +L D + + G +  A  +F++MP + VVSWTAM+  +       +   +F +ML +G+
Sbjct: 200 WSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGI 259

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352
           + N+FT    L ACA+  + + G +VH  ++ +  G      +ALV MY+K G++  A  
Sbjct: 260 QPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVR 319

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF    + DL++WTAMI G A +G+ ++A++YF  ++ SG  PD   F+ +L+AC ++G 
Sbjct: 320 VFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGL 379

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNSQ----NSF------ 460
           V   L+ F S++ +Y IE +  H+  V++LLSR G  + ++   N+     N F      
Sbjct: 380 VDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLL 439

Query: 461 ----------------TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                             L +++P++P++YV L+NIYA+ G + +V   R +M+ + I K
Sbjct: 440 GGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITK 499

Query: 505 DPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE- 561
            P  S+IEV   +H F  G   H  A+++++ L+ +    RE+GY+  T +VLH++++E 
Sbjct: 500 MPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQ 559

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT- 620
           K++ +G HSE+LA+AFG+I T  G  IK+ K L ICGDCH+ +K  SKI QREI++RD+ 
Sbjct: 560 KQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSN 619

Query: 621 RFHYFKDGTCSCRDYW 636
           RFH+FK+G+CSCRDYW
Sbjct: 620 RFHHFKNGSCSCRDYW 635



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 177/400 (44%), Gaps = 58/400 (14%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---ID 80
           +P + +    I+ L+ S  +T     +   + L +   S+ + +     A+L +S   + 
Sbjct: 56  RPPSTLLSNRILHLLSSHPAT-----LPDALALLSSLPSTDVCSYNTLVAALGRSPRGLA 110

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP---NRLTYPFVSK 137
            A ++FD    ++   ++ ++   A +   ++ ++ +  MLR        N  T      
Sbjct: 111 SARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALA 170

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           +  +      GR LHC +V+ G++ DA V   LADMY + G+   A  VFD  P ++   
Sbjct: 171 AATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRD--- 227

Query: 198 SVLLWNVLI--------------------------NGCSKIGYLRKAVE---------LF 222
            V+ W  ++                          N  +  G LR   E         + 
Sbjct: 228 -VVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVH 286

Query: 223 GMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           G M K           +L+  + + GD+  A  +F  MP+  +VSWTAMI+G++QNG+ +
Sbjct: 287 GRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPD 346

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TA 336
           +AL  F  +L +G R +  T V  LSACA  G ++ G+ + + I  +++G++        
Sbjct: 347 EALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIK-DEYGIEHTADHYAC 405

Query: 337 LVDMYAKCGNIE-AASLVFGETKEKDLLTWTAMIWGLAIH 375
           ++D+ ++ G  E A  ++   + + +   W +++ G  IH
Sbjct: 406 VIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIH 445



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/219 (30%), Positives = 113/219 (51%), Gaps = 7/219 (3%)

Query: 195 KSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG-DLKKAGEL 252
           +  S LL N +++  S     L  A+ L   +P  +V S+ +L+    R    L  A  L
Sbjct: 56  RPPSTLLSNRILHLLSSHPATLPDALALLSSLPSTDVCSYNTLVAALGRSPRGLASARAL 115

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML----DAGVRANDFTVVSALSACAK 308
           F++MP +   SW+A+++  +++G+   ALA++ +ML     AGV  N+FT  SAL+A   
Sbjct: 116 FDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGV-DNEFTASSALAAATA 174

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
                AG  +H ++          + +AL DMYAKCG ++ A  VF     +D+++WTAM
Sbjct: 175 ARCARAGRELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAM 234

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +       R  +  + F +M+ SG +P+   +  +L AC
Sbjct: 235 VERYFDARRDGEGFRLFVRMLRSGIQPNEFTYAGVLRAC 273


>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 562

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 161/423 (38%), Positives = 246/423 (58%), Gaps = 32/423 (7%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           +  A +LF++MPE+  V+W A+I G++ N +  KA+  F  ML  G + ++ TVV  LSA
Sbjct: 140 ISDASQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSA 199

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+ +GA   G  +H +I  N   L   +GTAL+DMYAKCG +     VF E +EK++ TW
Sbjct: 200 CSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTW 259

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +I G A++G+ + A+Q F +M+    +PD   FL +L AC + G V      F SM+ 
Sbjct: 260 NVLISGYAMNGQGDAALQAFSRMLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQ 319

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS-------------------------- 459
            + ++P ++H+  +V+LL R G   +  +  Q+                           
Sbjct: 320 QFGLQPRIEHYGCMVDLLGRAGLLEEALELIQSMSIEPDPIIWRALLCACRVHGNTKLGE 379

Query: 460 --FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
               +L++L+P +  +YVLLSNIY+ E RW +V ++R +M  R I+K PG S IE+N  V
Sbjct: 380 YIIKRLIELEPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGIRKVPGCSSIEINNVV 439

Query: 518 HRFEAGGHKLAK--EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLA 574
           + F A   +  +   I+ +L++++   +E GY+ GT+  L++I KEEKE ++  HSEKLA
Sbjct: 440 YEFVASNDRKPEFEAIYKQLDNLIKKLKENGYVTGTDMALYDIEKEEKEHSVMYHSEKLA 499

Query: 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCR 633
           LAFGL+ +    T++IVK L IC DCH   K  S + +R IV+RD  RFH+F +G CSCR
Sbjct: 500 LAFGLLNSPLDCTLRIVKNLRICLDCHEFFKVLSLVYKRYIVVRDRNRFHHFYEGFCSCR 559

Query: 634 DYW 636
           DYW
Sbjct: 560 DYW 562



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 49/322 (15%)

Query: 98  NVLIRG-LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           N +IR  L  N H  S +  F  M + S+ P+  T+P V K+ A L    +G+ +H +++
Sbjct: 58  NSMIRTYLDLNKHLNS-LYIFALMHKFSILPDSSTFPAVLKATAQLCDTGVGKMIHGIVI 116

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           + G   D +    L  +Y        A ++FDE PE+N     + WN LI G +      
Sbjct: 117 QMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERN----AVTWNALITGYTHNRKFV 172

Query: 217 KAVELF------GMMPKK----------------NVASWV-----------------SLI 237
           KA++ F      G  P +                N   W+                 +LI
Sbjct: 173 KAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVGTALI 232

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D + + G + +  ++FE++ EK V +W  +I+G++ NG+ + AL  F +ML    + ++ 
Sbjct: 233 DMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKPDEV 292

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVF 354
           T +  L AC   G +  G R         FGL+  I     +VD+  + G +E A  L+ 
Sbjct: 293 TFLGVLCACCHQGLVTEG-RWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALELIQ 351

Query: 355 GETKEKDLLTWTAMIWGLAIHG 376
             + E D + W A++    +HG
Sbjct: 352 SMSIEPDPIIWRALLCACRVHG 373



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/277 (24%), Positives = 113/277 (40%), Gaps = 16/277 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH  +I          +T L+       SI  A  +FD    +N   +N LI G   N
Sbjct: 109 KMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALITGYTHN 168

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             F   I  F  ML    +P+  T   V  + + L   + G+ +H  I  + +  + FV 
Sbjct: 169 RKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVFVG 228

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L DMY + G      KVF+E  EKN    V  WNVLI+G +  G    A++ F  M  
Sbjct: 229 TALIDMYAKCGAVYEVEKVFEEIREKN----VYTWNVLISGYAMNGQGDAALQAFSRMLM 284

Query: 228 KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAE 278
           +N      +++ ++     +G + +    F  M ++      +  +  M++   + G  E
Sbjct: 285 ENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLE 344

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           +AL +   M    +  +     + L AC   G  + G
Sbjct: 345 EALELIQSM---SIEPDPIIWRALLCACRVHGNTKLG 378



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 83/181 (45%), Gaps = 5/181 (2%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVS---WTAMINGFSQNGEAEKALAMFFQMLDA 290
           + LID  + +   +    +F +   +G ++     +MI  +    +   +L +F  M   
Sbjct: 26  MKLIDDSVSRNGFESIARIFSKY--RGSINSQQCNSMIRTYLDLNKHLNSLYIFALMHKF 83

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            +  +  T  + L A A++     G  +H  +    F       TALV +Y  C +I  A
Sbjct: 84  SILPDSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVYTSTALVHLYCTCLSISDA 143

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
           S +F E  E++ +TW A+I G   + ++ +AI  F+ M+  G +P     + +L+AC + 
Sbjct: 144 SQLFDEMPERNAVTWNALITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHL 203

Query: 411 G 411
           G
Sbjct: 204 G 204



 Score = 40.0 bits (92), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 112/279 (40%), Gaps = 34/279 (12%)

Query: 1   MKGHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNL 59
           + G+  NR    AI     + +     +  T   ++S      +  Q + IH  I  + L
Sbjct: 162 ITGYTHNRKFVKAIDAFRGMLADGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRL 221

Query: 60  FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF 119
             +  + T LI   +   ++     +F+    KN++ +NVLI G A N    + +  F  
Sbjct: 222 RLNVFVGTALIDMYAKCGAVYEVEKVFEEIREKNVYTWNVLISGYAMNGQGDAALQAFSR 281

Query: 120 MLRLSVRPNRLTYPFVSKSVASLSLLSLGR----------GLHCLIVKSGVEYDAFVRVH 169
           ML  + +P+ +T+  V  +     L++ GR          GL   I   G   D   R  
Sbjct: 282 MLMENFKPDEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAG 341

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC-----SKIG--YLRKAVELF 222
           L +  ++L ++       +  P        ++W  L+  C     +K+G   +++ +EL 
Sbjct: 342 LLEEALELIQSMS----IEPDP--------IIWRALLCACRVHGNTKLGEYIIKRLIEL- 388

Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                 N  ++V L + + R+    + G+L   M  +G+
Sbjct: 389 ---EPNNGENYVLLSNIYSRERRWAEVGKLRGMMSLRGI 424


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 194/587 (33%), Positives = 301/587 (51%), Gaps = 48/587 (8%)

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLL 145
           D FT     I NVL   L E S  QS      +  R  ++ N L    F++      +L 
Sbjct: 306 DEFT-----ILNVLPVCL-ERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S  R    +  K+   ++A     L   Y Q    R A  ++ +  +            L
Sbjct: 360 SSERVFDLMDTKTVSSWNA-----LLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSL 414

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +  CS++  L    E+ G   +  +A      +SL+  ++  G    A  LF+ M  + +
Sbjct: 415 LLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSL 474

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW  MI G+SQNG  ++A+ +F QML  G++  +  ++    AC+++ AL  G  +H +
Sbjct: 475 VSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCF 534

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
                      + ++++DMYAK G I  +  +F   +EKD+ +W  +I G  IHGR ++A
Sbjct: 535 ALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEA 594

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           ++ F+KM+  G +PD   F  IL AC ++G V+  L +F+ M   + IEP ++H+T VV+
Sbjct: 595 LELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVD 654

Query: 442 LLSRVGQ---------------DSQGYQNSQNSF-------------TKLLQLKPKHPSS 473
           +L R G+               DS+ + +  +S               KLL+L+P+ P +
Sbjct: 655 MLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPEN 714

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA--KEI 531
           YVL+SN++A  G+W DV RVR  M+   ++KD G S+IEV G VH F  G   L   +E+
Sbjct: 715 YVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEV 774

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKI 590
                 +       GY P T  VLH+++EE K   L  HSEKLA++FGL+ T  G  +++
Sbjct: 775 RETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRV 834

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            K L ICGDCH+  K+ SK+  R+IV+RD  RFH+F+DG CSC DYW
Sbjct: 835 YKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 881



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 132/535 (24%), Positives = 229/535 (42%), Gaps = 70/535 (13%)

Query: 21  SSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSID 80
           + HKP +N T   +I            + IH      +L +   +   LI+       ++
Sbjct: 95  TEHKP-DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVE 153

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKS 138
            A+ +F+H   +NL  +N +I G +EN   Q   + F  ML    S  P+  T   V   
Sbjct: 154 EAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPV 213

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A    +  G  +H L VK G+  +  V   L DMY +      A  +FD    KN  ++
Sbjct: 214 CAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFD----KNDKKN 269

Query: 199 VLLWNVLING-------------------------------------CSKIGYLRKAVEL 221
           ++ WN +I G                                     C +   L+   EL
Sbjct: 270 IVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL 329

Query: 222 FG------MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
            G      +   + VA+  + I  + R G L  +  +F+ M  K V SW A++ G++QN 
Sbjct: 330 HGYSWRHGLQSNELVAN--AFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNS 387

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
           +  KAL ++ QM D+G+  + FT+ S L AC+++ +L  G  +H +   N   +   IG 
Sbjct: 388 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 447

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           +L+ +Y  CG   AA ++F   + + L++W  MI G + +G  ++AI  F++M+  G +P
Sbjct: 448 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 507

Query: 396 DGTVFLAILTACWYSGQVKLA--LNFF---DSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
                + +  AC     ++L   L+ F     +  D F+  S      ++++ ++ G   
Sbjct: 508 YEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSS------IIDMYAKGGCIG 561

Query: 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                SQ  F +   L+ K  +S+ ++   Y   GR K+   +   M R  +K D
Sbjct: 562 L----SQRIFDR---LREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPD 609



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 185/405 (45%), Gaps = 49/405 (12%)

Query: 48  RQIHAQIILHNLFASSRI-TTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           R++H  +     F +  +  T++I+  S+  S   +  +FD    KNL  +N ++     
Sbjct: 18  RRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTR 77

Query: 107 NSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           N  F+  +S F  ++ ++  +P+  T P V K+ A L  L LG+ +H +  K  +  D F
Sbjct: 78  NELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVF 137

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L  MY + G    A KVF+  PE+N    ++ WN +I G S+ G+L+++   F  M
Sbjct: 138 VGNALIAMYGKCGLVEEAVKVFEHMPERN----LVSWNSIICGFSENGFLQESFNAFREM 193

Query: 226 P------KKNVASWV-----------------------------------SLIDGFMRKG 244
                    +VA+ V                                   SLID + +  
Sbjct: 194 LVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCR 253

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF--FQMLDAGVRANDFTVVSA 302
            L +A  LF++  +K +VSW +MI G+++  +  +   +    Q  DA ++A++FT+++ 
Sbjct: 254 FLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNV 313

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L  C +   L++   +H Y   +       +  A +  Y +CG + ++  VF     K +
Sbjct: 314 LPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTV 373

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +W A++ G A +    +A+  + +M  SG +PD     ++L AC
Sbjct: 374 SSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLAC 418



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 133/300 (44%), Gaps = 21/300 (7%)

Query: 34  IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I SL+ + +  K L    +IH   + + L     I   L+S          A  +FD   
Sbjct: 411 IGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGME 470

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            ++L  +NV+I G ++N      I+ F  ML   ++P  +    V  + + LS L LG+ 
Sbjct: 471 HRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKE 530

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LHC  +K+ +  D FV   + DMY + G    + ++FD   EK+    V  WNV+I G  
Sbjct: 531 LHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKD----VASWNVIIAGYG 586

Query: 211 KIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQM-----PEKGV 261
             G  ++A+ELF  M     K +  ++  ++      G ++   E F QM      E  +
Sbjct: 587 IHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKL 646

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
             +T +++   + G  + AL +  +M  D   R       S LS+C   G L  G +V N
Sbjct: 647 EHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR----IWSSLLSSCRIHGNLGLGEKVAN 702



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 14/122 (11%)

Query: 303 LSACAKVGALEAGVRVHNYIS-----CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           L AC +   +E G R+H  +S     CNDF     + T ++ MY+ CG+   + +VF + 
Sbjct: 5   LQACGQRKDIEVGRRLHEMVSASTQFCNDF----VLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKL 415
           + K+L  W A++     +  +E A+  F +++ S TE  PD      ++ AC  +G + L
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELI-SVTEHKPDNFTLPCVIKAC--AGLLDL 117

Query: 416 AL 417
            L
Sbjct: 118 GL 119


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 185/591 (31%), Positives = 304/591 (51%), Gaps = 70/591 (11%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A  +FD    +N   +  +I G A+N   +  +     + R  + P+  +      +
Sbjct: 368 VDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLA 427

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            + +  L  GR +H L VK+G +++++V   L  MY   GK                   
Sbjct: 428 CSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMY---GK------------------- 465

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
                     C  + Y+R   ++F  M  K+  SW S I   ++   L+ A  +F+ M  
Sbjct: 466 ----------CRNMEYVR---QVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLS 512

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           + VVSWT +I+ ++Q    ++A+  F  ML    + N   +   LS C  +G+ + G ++
Sbjct: 513 RDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI 572

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H     +    +  +  AL+ MY KCG  ++   VF   +E+D+ TW   I G A HG  
Sbjct: 573 HTVAIKHGMDSELIVANALMSMYFKCGCADSHK-VFDSMEERDIFTWNTFITGCAQHGLG 631

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +AI+ ++ M   G  P+   F+ +L AC ++G V     FF SM  DY + P ++H+  
Sbjct: 632 REAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYAC 691

Query: 439 VVNLLSRVGQDSQG--------------------------YQNSQ---NSFTKLLQLKPK 469
           +V+LL R G D QG                          ++N++    +  KL   +P 
Sbjct: 692 MVDLLGRTG-DVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPS 750

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKL 527
           +  +YV+LSNIY++ G W +VA +R +M++R + K+PG S++++   VH F  G   H+ 
Sbjct: 751 NAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEK 810

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGT 586
            +EI   L+D+    R  GY+P TE+VLH+I EE KE +L  HSEKLA+A+GL+ T  G 
Sbjct: 811 IEEIDYTLQDLYTLLRGTGYVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGM 870

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            I+I+K L ICGDCH+ +K+ S +++R+I +RD  RFH+F++G+CSC D+W
Sbjct: 871 PIQIMKNLRICGDCHTFIKFVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 170/394 (43%), Gaps = 59/394 (14%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A ++F     +NL  + V+I G             F  M      P++  +  V  +V  
Sbjct: 176 AWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTG 235

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG-AFKVFDETPEKNK----- 195
           L  L +   L  L++K+G E D  +   + ++Y +       A K FD   E+N+     
Sbjct: 236 LQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWST 295

Query: 196 ----------------------SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
                                  +S+     L+ G ++ G + +A  LF  +P   V SW
Sbjct: 296 MIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFEQIPDPIVVSW 355

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            ++I G+M+ G + +A ELF++MP +  +SW  MI G++QNG +E+AL +   +   G+ 
Sbjct: 356 NAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGML 415

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            +  ++ S+  AC+ +GALE G +VH+            +  AL+ MY KC N+E    V
Sbjct: 416 PSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQV 475

Query: 354 FGETKEK-------------------------------DLLTWTAMIWGLAIHGRYEQAI 382
           F   + K                               D+++WT +I   A   R ++A+
Sbjct: 476 FNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAV 535

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           ++FK M++   +P+  +   +L+ C   G  KL 
Sbjct: 536 EFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLG 569



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 134/289 (46%), Gaps = 50/289 (17%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           Y +LG+   A +VFD  PE+N     + WN +++   + G +  A  LF  MP ++V SW
Sbjct: 105 YARLGRVLDARRVFDGMPERN----TVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSW 160

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV- 292
            S++ G+     +  A  LF+QMP++ +V+WT MI+G+ +  +  K   +F  M   G  
Sbjct: 161 NSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGAS 220

Query: 293 --RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK------- 343
             ++N  +V+SA++    +G LE    +   +    F     IGT+++++Y +       
Sbjct: 221 PDQSNFASVLSAVTGLQDLGVLEV---LRPLVLKTGFESDVVIGTSILNVYTRDASALDI 277

Query: 344 -------------------------CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
                                     G I+AA  V+G    K + + TA++ GLA  GR 
Sbjct: 278 AIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRI 337

Query: 379 EQAIQYFKKMMYSGTEPDGTV--FLAILTACWYSGQVKLALNFFDSMRF 425
            +A   F+++      PD  V  + A++T    +G V  A   FD M F
Sbjct: 338 TEARILFEQI------PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 99/231 (42%), Gaps = 43/231 (18%)

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
           +LG+ R A +VFD  P ++    ++ WN +I+     G L  A  LF  +   NV +   
Sbjct: 45  RLGRLREAREVFDAMPHRD----IIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATI 100

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+ G+ R G +  A  +F+ MPE+  V+W AM++ + QNG+   A  +F  M    V + 
Sbjct: 101 LLSGYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTS- 159

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
                                                   ++V  Y     +  A  +F 
Sbjct: 160 --------------------------------------WNSMVTGYCHSRQMVDAWNLFK 181

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           +  +++L+TWT MI G     ++ +    F+ M + G  PD + F ++L+A
Sbjct: 182 QMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSA 232



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/265 (20%), Positives = 116/265 (43%), Gaps = 22/265 (8%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +IS+     + + +RQ+  ++ + +  + +     L+ +  L      A  IFD+   ++
Sbjct: 459 LISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLED----ARHIFDNMLSRD 514

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +  +I   A+       +  F  ML    +PN      +      L    LG+ +H 
Sbjct: 515 VVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHT 574

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           + +K G++ +  V   L  MY + G    + KVFD   E++    +  WN  I GC++ G
Sbjct: 575 VAIKHGMDSELIVANALMSMYFKCG-CADSHKVFDSMEERD----IFTWNTFITGCAQHG 629

Query: 214 YLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVS--- 263
             R+A++++      G++P  N  ++V L++     G + +  + F+ M  + G+     
Sbjct: 630 LGREAIKMYEHMESVGVLP--NEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLE 687

Query: 264 -WTAMINGFSQNGEAEKALAMFFQM 287
            +  M++   + G+ + A    + M
Sbjct: 688 HYACMVDLLGRTGDVQGAEKFIYDM 712


>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Cucumis sativus]
          Length = 542

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 186/521 (35%), Positives = 271/521 (52%), Gaps = 68/521 (13%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTP 91
           +ISL+    S  +L++IHA +    +     I ++L+  S+ S  + +DY+  +  +   
Sbjct: 16  LISLLDGCKSMFELKRIHALLFTLGISQDETIKSKLLLFSALSPARDLDYSYKLILNVPN 75

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
                +N LIR  +   +    I+ F+ ML+  V P+ LTYPF+ K+ + L    LG  +
Sbjct: 76  PTTFNWNTLIRAFSNTKNPNPSITVFIKMLQNGVSPDYLTYPFLVKATSKLLNQELGMAV 135

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H  IVKSG E D F++  L  MY        A KVFDE                      
Sbjct: 136 HVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVFDE---------------------- 173

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                        MP+KN+ +W +++DG+ + GDL  A E+F  MPEK VVSW+++I+G+
Sbjct: 174 -------------MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGY 220

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
            +     +A+A+F +M   G  AN+ T+VSAL ACA +GALE G  +H YI  N+  L  
Sbjct: 221 VKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLTI 280

Query: 332 AIGTALVDMYAKCGNIEAASLVF--GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
            + T+LVDMYAKCG I  A  VF     +E D+L W A+I GLA HG  ++A+  F +M 
Sbjct: 281 VLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMK 340

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
             G  PD   +L +L+ C + G V+ A  FFD +R    I P V+H+  +V+ LSR GQ 
Sbjct: 341 MVGIVPDEITYLCLLSCCAHGGLVEEAWYFFDCLRKHGMI-PKVEHYACMVDALSRAGQV 399

Query: 450 SQGYQ-------NSQNSFT---------------------KLLQLKPKHPSSYVLLSNIY 481
           S+ YQ          +S                       +L++L P H   YV LSNIY
Sbjct: 400 SEAYQFLCQMPVQPTSSMLGALLSGCMKHGKLDIAKVVGRRLVELDPNHDGRYVGLSNIY 459

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           AA+ RW D   +R  M+R+ +KK PG+S+IEV G +HRF A
Sbjct: 460 AADKRWDDAKNIREAMERKGVKKSPGFSFIEVYGVLHRFMA 500


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 198/590 (33%), Positives = 282/590 (47%), Gaps = 92/590 (15%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFK 185
           PN L    + +S  S     LGR  H  I+K+      +F+  HL +MY +L +   A  
Sbjct: 6   PNSLAS--LVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS------------- 232
           +   TP +    SV+ W  LI G  + G    A+  F  M + ++               
Sbjct: 64  LLSLTPNR----SVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASG 119

Query: 233 --------------------------WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
                                       S  D + + G  ++A ++F++MPE+ + +W A
Sbjct: 120 SLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNA 179

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SC 324
            ++     G  + AL  F +    G+   DF V S LSACA +  LE G  VH     +C
Sbjct: 180 YLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKAC 239

Query: 325 ---NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
              N F     +G+ALVDMY KCG+IE A   F E  E++L+TW AMI G A  G+ + A
Sbjct: 240 VVGNIF-----VGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMA 294

Query: 382 IQYFKKMMYSG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
           +  F +M        P+   F+ +L+AC  +G V + +  F+SMR  Y IEP  +H+  V
Sbjct: 295 VTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACV 354

Query: 440 VNLLSRVGQDSQGYQ------------------NSQNSFTK----------LLQLKPKHP 471
           V+LL R G   Q YQ                   +   F K          L +L P   
Sbjct: 355 VDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDS 414

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAK 529
            ++VLLSN++AA GRW++   VR  M+   IKK  G S+I     VH F+A    H+   
Sbjct: 415 GNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNS 474

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC--HSEKLALAFGLIQTTPGTT 587
           EI + L  +       GY+P T + L +++EE E+A+    HSEK+ALAFGLI    G  
Sbjct: 475 EIQAMLAKLRGEMEAAGYIPDTSFALFDLEEE-EKAMEVWYHSEKIALAFGLISIPAGVP 533

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRDYW 636
           I+I K L ICGDCHS +K+ S I  REI++RD   FH F+D  CSCRDYW
Sbjct: 534 IRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583


>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08305-like [Glycine max]
          Length = 548

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 179/522 (34%), Positives = 280/522 (53%), Gaps = 68/522 (13%)

Query: 33  HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS--IDYALSIFDHFT 90
           +++SL+    S  +L+Q+HA +I   L       ++++  ++L  S  I+Y+  +F   +
Sbjct: 16  NLLSLLDKCKSILELKQLHAVVISCGLSQDDPFISKILCFSALSNSGDINYSYRVFSQLS 75

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
              +  +N +IRG + + +    +S F+ MLRL V P+ LTYPF+ K+ A L     G  
Sbjct: 76  SPTIFSWNTIIRGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVS 135

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I+K+G E D F++  L  MY   G +  A KVFD                      
Sbjct: 136 VHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVFDS--------------------- 174

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                         + +KNV SW S++DG+ + G++  A + FE M EK V SW+++I+G
Sbjct: 175 --------------IQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDG 220

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           + + GE  +A+A+F +M  AG +AN+ T+VS   ACA +GALE G  ++ YI  N   L 
Sbjct: 221 YVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGLPLT 280

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGET--KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
             + T+LVDMYAKCG IE A L+F      + D+L W A+I GLA HG  E++++ FK+M
Sbjct: 281 LVLQTSLVDMYAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEM 340

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  PD   +L +L AC + G VK A  FF+S+     + P+ +H+  +V++L+R GQ
Sbjct: 341 QIVGICPDEVTYLCLLAACAHGGLVKEAWFFFESLS-KCGMTPTSEHYACMVDVLARAGQ 399

Query: 449 DSQGYQ----------------------NSQNSFT------KLLQLKPKHPSSYVLLSNI 480
            +  YQ                      N +N         KL++L+P H   Y+ LSN+
Sbjct: 400 LTTAYQFICQMPTEPTASMLGALLSGCINHRNLALAEIVGRKLIELEPNHDGRYIGLSNM 459

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           YA + RW D   +R  M+RR +KK PG+S++E++G +HRF A
Sbjct: 460 YAVDKRWDDARSMREAMERRGVKKSPGFSFVEISGVLHRFIA 501


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 201/612 (32%), Positives = 324/612 (52%), Gaps = 75/612 (12%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N  +R L++   ++  ++ +  MLR S  PN  T+PF+ KS A LSL      LH  ++
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVI 81

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE------------------------ 192
           ++G + D + R  L + Y +      A KVFDE P                         
Sbjct: 82  RTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPTICYNAMISGYSFNSKPLHAVCL 141

Query: 193 ----KNKSESVLLWNV---------LINGCSKIGYLRKAVELFGMMPK----KNVASWVS 235
               + + E  L  +V         L++GCS   +L   V L G   +     ++A   S
Sbjct: 142 FRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANS 201

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  +++ G+++ A ++F++M  + +++W AMI+G++QNG A   L ++ +M  +GV A+
Sbjct: 202 LVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSAD 261

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T++  +SACA +GA   G  V   I    FG    +  ALV+MYA+CGN+  A  VF 
Sbjct: 262 AVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFD 321

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
            + EK +++WTA+I G  IHG  E A++ F +M+ S   PD TVF+++L+AC ++G    
Sbjct: 322 RSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDR 381

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------- 452
            L +F  M   Y ++P  +H++ VV+LL R G+  +                        
Sbjct: 382 GLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGAC 441

Query: 453 --YQNSQNS---FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
             ++N++ +   F  +++L+P +   YVLLSNIY      + V+RVR +M+ R ++KDPG
Sbjct: 442 KIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPG 501

Query: 508 WSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA 565
           +SY+E  G ++ F +G   H   K+I+  L+++ +  +E    P  E       EE    
Sbjct: 502 YSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKE--VHPPNEKC-QGRSEELLIG 558

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHY 624
            G HSEKLA+AF L+ T  GT I ++K L +C DCH  +K  SKI  R+ ++RD TRFH+
Sbjct: 559 TGVHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRFHH 618

Query: 625 FKDGTCSCRDYW 636
           F+DG CSC+DYW
Sbjct: 619 FRDGICSCKDYW 630



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 117/274 (42%), Gaps = 20/274 (7%)

Query: 28  NITETHIISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           N+    ++SL+   +    L     +H   +         +   L++       ++ A  
Sbjct: 158 NVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELARK 217

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    ++L  +N +I G A+N H +  +  +  M    V  + +T   V  + A+L  
Sbjct: 218 VFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLGVMSACANLGA 277

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
             +GR +   I + G   + F+R  L +MY + G    A +VFD + EK    SV+ W  
Sbjct: 278 QGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEK----SVVSWTA 333

Query: 205 LINGCSKIGYLRKAVELFGMM------PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           +I G    G+   A+ELF  M      P K V  +VS++      G   +  E F++M  
Sbjct: 334 IIGGYGIHGHGEVALELFDEMVESAVRPDKTV--FVSVLSACSHAGLTDRGLEYFKEMER 391

Query: 259 K-----GVVSWTAMINGFSQNGEAEKALAMFFQM 287
           K     G   ++ +++   + G  E+A+ +   M
Sbjct: 392 KYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSM 425



 Score = 39.3 bits (90), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 13/188 (6%)

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           +W   +   S+  +  +AL ++  ML +    N FT    L +CA +    A  ++H ++
Sbjct: 21  AWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHV 80

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
                       ++L++ YAKC     A  VF E      + + AMI G + + +   A+
Sbjct: 81  IRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNPT-ICYNAMISGYSFNSKPLHAV 139

Query: 383 QYFKKMMYSGTEPDG---------TVFLAILTACWYSGQVKLALNFFD-SMRFDYFIEPS 432
             F+KM     E DG            L++++ C  +  + + +      +RF +  + +
Sbjct: 140 CLFRKMRRE--EEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLA 197

Query: 433 VKHHTVVV 440
           V +  V +
Sbjct: 198 VANSLVTM 205


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 171/491 (34%), Positives = 263/491 (53%), Gaps = 37/491 (7%)

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLID 238
           AF +F E            ++ L+  C+    LR+ + L     K     N+    +LI+
Sbjct: 114 AFSLFGELLCSGLLPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLIN 173

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            +    D+  A  +F++M +  +VS+ A+I G++++ +  +AL++F ++  + +   D T
Sbjct: 174 MYAECNDMNAARGVFDEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVT 233

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           ++S + +CA +GAL+ G  +H Y+    F     + TAL+DM+AKCG++  A  +F   +
Sbjct: 234 MLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMR 293

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D   W+AMI   A HG   +AI  F++M   G  PD   FL +L AC ++G V+    
Sbjct: 294 VRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRG 353

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY------------------------- 453
           +F SM   Y I P +KH+  +V+LL R G   + Y                         
Sbjct: 354 YFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTH 413

Query: 454 ---QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
              + ++    ++ +L   H   YV+LSN+YA  GRW+DV  +R LM+ R + K PG S 
Sbjct: 414 GNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSS 473

Query: 511 IEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEAL 566
           +EVN  VH F +G   H ++ E+   L+++M   +  GY+P T  V H   EE  KE  L
Sbjct: 474 VEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVL 533

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYF 625
             HSEKLA+AFGL+ T PGTTI++ K L ICGDCH+  K  S I  R+IV+RD  RFH F
Sbjct: 534 RYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHRF 593

Query: 626 KDGTCSCRDYW 636
           +DG CSC D+W
Sbjct: 594 EDGKCSCGDFW 604



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 107/202 (52%), Gaps = 1/202 (0%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           +  A  LF+Q+ +K ++ +  M  G++++     A ++F ++L +G+  +D+T  S L A
Sbjct: 80  MDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDDYTFSSLLKA 139

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           CA   AL  G+ +H +           I   L++MYA+C ++ AA  VF E ++  ++++
Sbjct: 140 CASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSY 199

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            A+I G A   +  +A+  F+++  S  EP     L+++ +C   G + L     + ++ 
Sbjct: 200 NAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALDLGKWIHEYVKK 259

Query: 426 DYFIEPSVKHHTVVVNLLSRVG 447
             F +  VK +T ++++ ++ G
Sbjct: 260 KGF-DKYVKVNTALIDMFAKCG 280


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 194/585 (33%), Positives = 295/585 (50%), Gaps = 78/585 (13%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           L+  P RL +  ++ + A    L   R +H  +  S      F+   L  +Y + G    
Sbjct: 60  LAATP-RLYHSLIT-ACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD 117

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKK------------- 228
           A +VFD  P ++       W  LI G ++     +A+ L  GM+  +             
Sbjct: 118 ARRVFDGMPARDMCS----WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLK 173

Query: 229 -------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                                    +V    +L+D + R G +  A  +F+Q+  K  VS
Sbjct: 174 AAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS 233

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W A+I GF++ G+ E  L MF +M   G  A  FT  S  SA A +GALE G  VH ++ 
Sbjct: 234 WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMI 293

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            +   L   +G  ++DMYAK G++  A  VF    +KD++TW +M+   A +G   +A+ 
Sbjct: 294 KSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVT 353

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
           +F++M   G   +   FL+ILTAC + G VK    +FD M+ +Y +EP + H+  VV+LL
Sbjct: 354 HFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLL 412

Query: 444 SRVG-------------------------QDSQGYQNS---QNSFTKLLQLKPKHPSSYV 475
            R G                            + ++N+   Q +   + +L P      V
Sbjct: 413 GRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPV 472

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
           LL NIYA+ G+W   ARVR +M+   +KK+P  S++E+   VH F A    H  ++EI+ 
Sbjct: 473 LLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYK 532

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVK 592
           K E+I    R+ GY+P T++VL ++ E++ +A L  HSEK+ALAF LI    G TI+I+K
Sbjct: 533 KWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMK 592

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            + ICGDCHS  +Y SK+ +REIV+RDT RFH+F  G+CSC DYW
Sbjct: 593 NIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 159/384 (41%), Gaps = 48/384 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +I+      S    R IHA +       S  +   LI       ++  A  +FD    ++
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +  LI G A+N      +     MLR   +PN  T+  + K+  + +   +G  +H 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           L VK     D +V   L DMY + G+   A  VFD+   KN     + WN LI G ++ G
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG----VSWNALIAGFARKG 245

Query: 214 YLRKAVELFGMMPKKNVAS----------------------WV----------------- 234
                + +F  M +    +                      WV                 
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 305

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +++D + + G +  A ++F+++ +K VV+W +M+  F+Q G   +A+  F +M   GV  
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 365

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAAS 351
           N  T +S L+AC+  G ++ G +  + +   ++ L+  I     +VD+  + G + +A  
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMM--KEYNLEPEIDHYVTVVDLLGRAGLLNDALV 423

Query: 352 LVFGETKEKDLLTWTAMIWGLAIH 375
            +F    +     W A++    +H
Sbjct: 424 FIFKMPMKPTAAVWGALLGSCRMH 447



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 13/277 (4%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++   KP N  T   ++    +S S+    QIHA  + ++      + + L+   +    
Sbjct: 157 LRGRFKP-NGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGR 215

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A+++FD    KN   +N LI G A     ++ +  F  M R        TY  V  +
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           +A +  L  G+ +H  ++KSG    AFV   + DMY + G    A KVFD   +K+    
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKD---- 331

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ WN ++   ++ G  R+AV  F  M K     N  +++S++      G +K+  + F+
Sbjct: 332 VVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD 391

Query: 255 QMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQM 287
            M E      +  +  +++   + G    AL   F+M
Sbjct: 392 MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428



 Score = 42.0 bits (97), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 104/254 (40%), Gaps = 15/254 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           + + T + + S I    + +Q + +HA +I      S+ +   ++   +   S+  A  +
Sbjct: 264 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 323

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    K++  +N ++   A+    +  ++HF  M +  V  N++T+  +  + +   L+
Sbjct: 324 FDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 383

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+    ++ +  +E +    V + D+  + G    A     + P K    +  +W  L
Sbjct: 384 KEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMK---PTAAVWGAL 440

Query: 206 INGC-----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +  C     +KIG    A  +F + P  +    V L + +   G    A  + + M   G
Sbjct: 441 LGSCRMHKNAKIGQF-AADHVFELDP-DDTGPPVLLYNIYASTGQWDAAARVRKMMKATG 498

Query: 261 V-----VSWTAMIN 269
           V      SW  + N
Sbjct: 499 VKKEPACSWVEIEN 512


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 175/462 (37%), Positives = 258/462 (55%), Gaps = 37/462 (8%)

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
           C  +G  RK ++    M  K+V SW S++  + R  D+  A E+F   P K +V+WTAM+
Sbjct: 195 CGDVGAARKVLD---EMVVKDVISWTSIVAAYSRSRDMGSAEEVFALCPVKDMVAWTAMV 251

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G++QN    KAL  F QM  AG+  ++ ++  A+SACA++GA+   V +      +  G
Sbjct: 252 TGYAQNAMPVKALEAFEQMAGAGMPIDEVSLTGAISACAQLGAVRRAVWIQEIADRSGLG 311

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +G+ LVDMYAKCG I+ A  VF   +EK++ T+++MI GLA HGR   AI  F  M
Sbjct: 312 RNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNVYTYSSMIVGLASHGRANDAIALFNDM 371

Query: 389 MY-SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           +  +  EP+   F+ +LTAC ++G VK    +F  M+  Y I PS  H+T +V+LL R G
Sbjct: 372 VRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYTCMVDLLGRAG 431

Query: 448 QDSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSN 479
              +                              + ++ +   L +L+P+   +YVLLSN
Sbjct: 432 LVIEALDLVKSMTVEPHGGVWGALLGACRIHGNTKVAKVAAQHLFKLEPEGIGNYVLLSN 491

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAGG--HKLAKEIHSKLE 536
             A+ G W +V++VR LM+ R +KKDP  S  E  +G VH+F AG   H    EI   L 
Sbjct: 492 TLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEGRDGLVHQFFAGDNTHPWMHEIKKTLL 551

Query: 537 DIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
           ++ A  +  GY+P    V++N+  EEKE  L  HSEKLAL+FGL+     ++I+IVK L 
Sbjct: 552 ELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGHSEKLALSFGLLTLESRSSIRIVKNLR 611

Query: 596 ICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           IC DCH  ++  SK+   EI++RD  RFH+F+DG CSC  +W
Sbjct: 612 ICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDGECSCGGFW 653


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 193/578 (33%), Positives = 290/578 (50%), Gaps = 80/578 (13%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           D A  +   +  ++  + N LIR LA ++     +  +  +LR    P   T P + KS+
Sbjct: 157 DQAALVTSGWLRRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLKSL 216

Query: 140 ASLSLLSLGRGL----HCLIVKSGVE-----YDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           A    +   RGL    H   VK G+       +A +RVH                     
Sbjct: 217 ALSPAVPGARGLALAVHAHAVKLGLAGFLLVSNALIRVH--------------------- 255

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250
                                +G L  A+ L       + +++ +LI  + R G +  A 
Sbjct: 256 ------------------AGILGRLSDALVLLRTAASVDASTFNTLITAYARAGRVTDAR 297

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            LF++MP +  VSW+AM+NG+ Q G+  +AL +F +M   GVR +D  +V  L+ACA++G
Sbjct: 298 ALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVLVGVLAACAQLG 357

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            LE G  VH Y+  N+  +   +GTALVDMYAKCG ++ A  VF   KEK++L WT MI 
Sbjct: 358 VLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIK 417

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           GLA+HGR  +A++ F +M   G +PD   F+  L AC ++G V      FDSM   Y I+
Sbjct: 418 GLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIK 477

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------------------- 462
           P ++H+  +V+LL+R G  ++  +  +    K                            
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKH 537

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
            ++L+P    +YVLL NIYAA GR      +R LM+ + + K PG S +E+ G +H+F  
Sbjct: 538 WIELEPDKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEIKGVIHQFIV 597

Query: 523 G--GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFG 578
           G   H   +EI SK ++I +  R E+GY+P  + VL +I +EEKE AL  HSEK+A+AF 
Sbjct: 598 GDLSHPFIEEILSKWDEIDSRIRLEEGYVPDKKEVLLDIEEEEKENALSRHSEKMAIAFA 657

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           LI T+    I+IVK L +C DCH + K  SK+    +V
Sbjct: 658 LINTSDDMPIRIVKNLRVCHDCHHVTKLISKVFDLTVV 695



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 124/295 (42%), Gaps = 30/295 (10%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI++ +    +  A ++FD    +N   ++ ++ G  +    +  +  F  M    VRP+
Sbjct: 283 LITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPD 342

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
                 V  + A L +L  G+ +H  +  + +    F+   L DMY + G+ + A +VF 
Sbjct: 343 DTVLVGVLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFK 402

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
              EKN    VL W  +I G +  G   +A+ELF  M +  V     +++  +      G
Sbjct: 403 VMKEKN----VLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTG 458

Query: 245 DLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
            + K  ELF+ M  K      +  +  M++  ++NG   +A  M  +M            
Sbjct: 459 LVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKM------------ 506

Query: 300 VSALSACAKV-GALEAGVRVHNYISCNDFGLKGAIGTAL--VDMYAKCGNIEAAS 351
              +   A + GAL AG R H  +   ++ +K  I         Y   GNI AAS
Sbjct: 507 --PMKPDALIWGALMAGCRFHKNVELAEYVVKHWIELEPDKSGAYVLLGNIYAAS 559



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 51/226 (22%), Positives = 97/226 (42%), Gaps = 17/226 (7%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           +Q + +H  +  +N+  +  + T L+   +    +  A+ +F     KN+  +  +I+GL
Sbjct: 360 EQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGL 419

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL-HCLIVKSGVEYD 163
           A +      +  F  M RL V+P+ + +     +     L+  GR L   ++ K G++  
Sbjct: 420 AMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRELFDSMVRKYGIKPK 479

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL-- 221
                 + D+  + G    A ++ ++ P K  +   L+W  L+ GC       K VEL  
Sbjct: 480 IEHYGCMVDLLARNGLLNEAREMVEKMPMKPDA---LIWGALMAGCR----FHKNVELAE 532

Query: 222 ------FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                   + P K+  ++V L + +   G    A E+   M EKGV
Sbjct: 533 YVVKHWIELEPDKS-GAYVLLGNIYAASGRHASAREIRHLMREKGV 577


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  304 bits (779), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 175/491 (35%), Positives = 264/491 (53%), Gaps = 38/491 (7%)

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLID 238
           A +VF    E+  +     +  L+  C+      +  +  G+  K   A       +LI+
Sbjct: 122 AARVFVRMMEEGVAPDTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLIN 181

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            +   GD++ A  +F++M  + VVS+ AMI    ++    +AL +F +M   G++    T
Sbjct: 182 MYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSVT 241

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           ++S LSACA +GALE G  +H+YI          + TAL+DMYAKCG++E A  VF + +
Sbjct: 242 LISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDME 301

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D   W+ M+   A HG   +AI  F++M   G +PD   FL +L AC +SG V   L 
Sbjct: 302 SRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQ 361

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------------------------ 454
           +FDSMR +Y I   +KH+  V +LL+R GQ  + Y+                        
Sbjct: 362 YFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGH 420

Query: 455 ----NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                 +  F ++L+L   H   YV+ SN+ A  GRW+++  VR LM  + + K PG S 
Sbjct: 421 GDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSS 480

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH--NIKEEKEEAL 566
           IE++  VH F AG   H  ++E    +++++   +  GY+P T  V H    +EEK  +L
Sbjct: 481 IEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSL 540

Query: 567 GCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYF 625
             HSEKLA++FGL+ T PGTT++IVK L +C DCHS+ K  S +  R I+LRD  RFH+F
Sbjct: 541 RYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHF 600

Query: 626 KDGTCSCRDYW 636
           +DG CSC DYW
Sbjct: 601 EDGVCSCGDYW 611



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/437 (23%), Positives = 181/437 (41%), Gaps = 64/437 (14%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII-------LHNLFA 61
           LT   +P    KS + P ++     +++ +    S + L Q+HA  +        H  F 
Sbjct: 6   LTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFV 65

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISH---- 116
           +  +T      A     + YA  +FD    P ++  +N L+RG A       C       
Sbjct: 66  TRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARV 125

Query: 117 FVFMLRLSVRPNRLTYPFVS--KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
           FV M+   V P+  TY FVS  K+ AS      GR  H + VK+G     +V   L +MY
Sbjct: 126 FVRMMEEGVAPD--TYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMY 183

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------ 228
            + G  R A  +FD    +   E V+ +N +I    +     +A+ LF  M  K      
Sbjct: 184 AECGDVRAARVMFD----RMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTS 239

Query: 229 ----------------NVASWV-----------------SLIDGFMRKGDLKKAGELFEQ 255
                            +  W+                 +LID + + G L+ A  +F+ 
Sbjct: 240 VTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQD 299

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           M  +   +W+ M+  ++ +G   +A++MF +M   G++ +D T +  L AC+  G +  G
Sbjct: 300 MESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEG 359

Query: 316 VRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGL 372
           ++  +  S  ++G+   I     + D+ A+ G +E A     E   K   + W  ++   
Sbjct: 360 LQYFD--SMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSAC 417

Query: 373 AIHGRYEQAIQYFKKMM 389
           A HG  +   + F++++
Sbjct: 418 AGHGDVDMGKRVFERIL 434


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 194/626 (30%), Positives = 318/626 (50%), Gaps = 77/626 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +   ++ +LI    +       +  F+ ML     P+  +   +  +   
Sbjct: 199 AQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTE 258

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG---AFKVFDETPEKNKSES 198
           L  + LG+ LH + ++ G+  D+ V   L DMY +L   R    A KVF   P  N    
Sbjct: 259 LGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHN---- 314

Query: 199 VLLWNVLINGCSKIGYLRKAV-----ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
           V+ W  LI+G  + G     V     E+     + N  ++ +L+       D     ++ 
Sbjct: 315 VMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIH 374

Query: 254 EQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQM---------------------- 287
             + +  +    V   A+++ ++++G  E+A   F Q+                      
Sbjct: 375 AHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCS 434

Query: 288 -----LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
                +D GV  + FT  S LSA A VG L  G ++H       F     I  +LV MYA
Sbjct: 435 SKIEGMDDGV--STFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYA 492

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           +CG +E A   F E K+ ++++WT++I GLA HG  +QA+  F  M+ +G +P+   ++A
Sbjct: 493 RCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIA 552

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQNS---- 456
           +L+AC + G VK     F SM+ D+ + P ++H+  +V+LL+R G  ++++ + N     
Sbjct: 553 VLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCK 612

Query: 457 ----------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                                 + +   ++ L+P+ P+ YVLLSN+YA  G W +VAR+R
Sbjct: 613 ADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLWDEVARIR 672

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTE 552
           +LM+ +++ K+ G S+++V   +H F AG   H LA +I++KL  ++   ++ GY+P T 
Sbjct: 673 SLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTS 732

Query: 553 WVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            VLH++ EE KE+ L  HSEK+A+AFGLI T+    ++I K L +C DCHS +KY SK +
Sbjct: 733 IVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSAIKYISKST 792

Query: 612 QREIVLRDT-RFHYFKDGTCSCRDYW 636
            REI+LRD+ RFH  KDG CSC +YW
Sbjct: 793 GREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/384 (26%), Positives = 179/384 (46%), Gaps = 37/384 (9%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASLHKSIDYALSIFDH 88
           + +IS      S +  +Q+H+  +   L + S ++  L+   +   + +S+++A  +F  
Sbjct: 250 SSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKT 309

Query: 89  FTPKNLHIFNVLIRGLAENS-HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147
               N+  +  LI G  ++     + ++ F  ML  S+RPN +TY  + K+ A+LS    
Sbjct: 310 MPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDS 369

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------------- 194
           GR +H  ++K+ + +   V   L  MY + G    A K FD+  E N             
Sbjct: 370 GRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERN 429

Query: 195 ------------KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLID 238
                          S   +  L++  + +G L K  +L  +  K    S      SL+ 
Sbjct: 430 NASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNSLVS 489

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + R G L+ A   F++M +  V+SWT++I+G +++G A++AL+MF  M+ AGV+ ND T
Sbjct: 490 MYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVT 549

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGE 356
            ++ LSAC+ VG ++ G + H      D GL   +     +VD+ A+ G +E A     E
Sbjct: 550 YIAVLSACSHVGLVKEG-KEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINE 608

Query: 357 TKEK-DLLTWTAMIWGLAIHGRYE 379
              K D L W  ++     +G  E
Sbjct: 609 MPCKADALVWKTLLSACRTYGNTE 632



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 166/376 (44%), Gaps = 58/376 (15%)

Query: 138 SVASLSLLSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           S A    L LGR LH  +++S + + DA V   L  MY + G    A +VFD+       
Sbjct: 49  SAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMC---GV 105

Query: 197 ESVLLWNVLINGCSKIGYLRKAV----------------------------ELF------ 222
             ++ W  + +  ++ G  R+++                            ELF      
Sbjct: 106 RDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLAGGV 165

Query: 223 --GMMPKK-----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
             G + K      +V+   +LID F R GDL  A  +F+ + E+  V WT +I  + Q G
Sbjct: 166 VLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAG 225

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
            A K + +F  MLD G   + +++ S +SAC ++G++  G ++H+            +  
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSC 285

Query: 336 ALVDMYAKCG---NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ-YFKKMMYS 391
            LVDMYAK     ++E A  VF      ++++WTA+I G    G  E  +   F++M+  
Sbjct: 286 GLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNE 345

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMR--FDYFIEPSVKHHTVVVNLLSRVGQD 449
              P+   +  +L AC         L+  DS R    + ++ S+ H  VV N L  +  +
Sbjct: 346 SIRPNHITYSNLLKAC-------ANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAE 398

Query: 450 SQGYQNSQNSFTKLLQ 465
           S   + ++ +F +L +
Sbjct: 399 SGCMEEARKAFDQLYE 414



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 91/408 (22%), Positives = 176/408 (43%), Gaps = 40/408 (9%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +  S +P N+IT ++++    + +     RQIHA ++  ++   + +   L+S  +    
Sbjct: 343 LNESIRP-NHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGC 401

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ++ A   FD     N+   +  +     N+   SC S    M       +  T+  +  +
Sbjct: 402 MEEARKAFDQLYETNILSMSPDVETERNNA---SCSSKIEGM---DDGVSTFTFASLLSA 455

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            AS+ LL+ G+ LH L +K+G   D  +   L  MY + G    A + FDE  + N    
Sbjct: 456 AASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHN---- 511

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ W  +I+G +K GY ++A+ +F  M     K N  ++++++      G +K+  E F 
Sbjct: 512 VISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFR 571

Query: 255 QM-PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            M  + G++     +  +++  +++G  E+A     +M     +A+     + LSAC   
Sbjct: 572 SMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEM---PCKADALVWKTLLSACRTY 628

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G  E G    N++  N      A    L ++YA  G  +  + +    ++K+L   T + 
Sbjct: 629 GNTEIGEIAANHV-INLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLS 687

Query: 370 W---GLAIH-------------GRYEQAIQYFKKMMYSGTEPDGTVFL 401
           W   G  IH               Y + +   +++   G  PD ++ L
Sbjct: 688 WMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVL 735



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 60/116 (51%), Gaps = 2/116 (1%)

Query: 303 LSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGE-TKEK 360
           L++ A+ G L  G  +H  +  ++       +  +L+ MY+KCG +EAA  VF +    +
Sbjct: 47  LTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVR 106

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           DL++WTAM   LA +G   ++++   +M+  G  P+     A   AC+     +LA
Sbjct: 107 DLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLA 162


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 191/642 (29%), Positives = 316/642 (49%), Gaps = 78/642 (12%)

Query: 36  SLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPK 92
           S++ + +  K L+    IH   + H +     + T L++  +    +  A ++FD    +
Sbjct: 348 SILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR 407

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           N+  +N L          Q  ++ F  M+   V+P+ +T   +  + + L  L  G+ +H
Sbjct: 408 NVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIH 467

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
              V+ G+  D FV   L  +Y                                   +K 
Sbjct: 468 GFAVRHGMVEDVFVCNALLSLY-----------------------------------AKC 492

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMI 268
             +R+A  +F ++P + VASW  ++  +    + +K   +F QM    V    ++W+ +I
Sbjct: 493 VCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVI 552

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI--SCND 326
            G  +N   E+A+ +F +M   G + ++ T+ S L AC+    L  G  +H Y+     D
Sbjct: 553 GGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWKD 612

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           + L  A   ALVDMYAKCG +  +  VF     KD+ +W  MI+   +HG  ++A+  F+
Sbjct: 613 WDL--ARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFE 670

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           KM+ S  +PD   F  +L+AC +S  V+  +  F+SM  D+ +EP  +H+T VV++ SR 
Sbjct: 671 KMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRA 730

Query: 447 GQDSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLS 478
           G   + Y   Q                             S  KL ++ P   ++YV L 
Sbjct: 731 GCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLF 790

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLE 536
           NI      W + +++R LM+ R I K PG S+  V   VH F AG   +  + +I++ L+
Sbjct: 791 NILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDKSNMESDKIYNFLD 850

Query: 537 DIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
           ++ A  +  GY P T++VLH+I +EEK E+L  HSEKLA+AFG++     +TI++ K L 
Sbjct: 851 ELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLR 910

Query: 596 ICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           ICGDCH+ +KY S +    IV+RD+ RFH+FK+G CSC+D+W
Sbjct: 911 ICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 193/465 (41%), Gaps = 78/465 (16%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N +T + I+         K  ++IH  ++ H +     +++  ++  +    +  A ++
Sbjct: 139 ANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    +++  +N L          Q  ++ F  M+   V+P+ +T   +  + + L  L
Sbjct: 199 FDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDL 258

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +H   +K G+  + FV   L ++Y      R A  VFD  P +N    V+ WN L
Sbjct: 259 KSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRN----VITWNSL 314

Query: 206 INGCSKIGYLRKAVELF------GMMPKKNVASWV-------------SLIDGFMRKGDL 246
            +     G+ +K + +F      G+ P     S +               I GF  K  +
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGM 374

Query: 247 --------------------KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
                               ++A  +F+ MP + VV+W ++ + +   G  +K L +F +
Sbjct: 375 VEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFRE 434

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M+  GV+ +  T++S L AC+ +  L++G  +H +   +       +  AL+ +YAKC  
Sbjct: 435 MVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVC 494

Query: 347 IEAASLVFG-----------------------------------ETKEKDLLTWTAMIWG 371
           +  A +VF                                    +  + D +TW+ +I G
Sbjct: 495 VREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGG 554

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
              + R E+A++ F+KM   G +PD T   +IL AC  S  +++ 
Sbjct: 555 CVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG 599



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 172/407 (42%), Gaps = 43/407 (10%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           +S    +++Q H       + +   I    I +    K ++ A  +FD    +++  +N 
Sbjct: 52  ASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNS 111

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           L          Q  ++ F  M    V+ N LT   +    + L  L  G+ +H  +V+ G
Sbjct: 112 LSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHG 171

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           +  D FV     + Y +    R A  VFD  P ++    V+ WN L +     G+ +K +
Sbjct: 172 MVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRD----VVTWNSLSSCYVNCGFPQKGL 227

Query: 220 ELF------GMMPKKNVASWV-------------SLIDGFMRKGDL-------------- 246
            +F      G+ P     S +               I GF  K  +              
Sbjct: 228 NVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLY 287

Query: 247 ------KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
                 ++A  +F+ MP + V++W ++ + +   G  +K L +F +M   GV+ +   + 
Sbjct: 288 ESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMS 347

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L AC+++  L++G  +H +   +       + TALV++YA C  +  A  VF     +
Sbjct: 348 SILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR 407

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +++TW ++       G  ++ +  F++M+ +G +PD    L+IL AC
Sbjct: 408 NVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHAC 454


>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
          Length = 558

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 179/469 (38%), Positives = 264/469 (56%), Gaps = 40/469 (8%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMR----KGDLKKAGELFEQMPEKG 260
           ++  C++   L+  ++L  ++ K    S V + +G +      G L  A + FE+MPE+ 
Sbjct: 93  VLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFEEMPERD 149

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVH 319
           +VSW++MI  F++NG   +ALA+F +M   G V+ ++  V+S +SA + +G LE G  + 
Sbjct: 150 LVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISILGDLELGKWIR 209

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            +IS N      ++GTALVDM+++CG IE +  VF E  E+++LTWTA+I GLA+HGR  
Sbjct: 210 GFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALINGLAVHGRSA 269

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
           +A++ F +M   G +PD   F  +L AC + G V    + F+S+R +Y +EP  +H+  +
Sbjct: 270 EALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIRNEYGMEPLPEHYGCM 329

Query: 440 VNLLSRVGQDSQ------GYQNSQNSFT----------------------KLLQLKPKHP 471
           V+LL R G  ++      G     NS                        K+ +L   H 
Sbjct: 330 VDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVKEKINELDSYHD 389

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAK 529
             YVLLSN+Y   GRW + A VR  M+ + I K PG S I VN  +H F AG   H   +
Sbjct: 390 GDYVLLSNVYGGVGRWAEKAGVRNSMREKRISKKPGCSLINVNHLIHEFVAGDNNHPQFE 449

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTI 588
            I   L  ++   +  GY P    VL +I+EE KE  LG HSEKLA+AF L+      TI
Sbjct: 450 SIREFLVSMIDSLKVVGYTPDISNVLFDIEEEEKESTLGYHSEKLAVAFALLCFKDSRTI 509

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           +++K L IC DCH  MKYAS + +REI++RD  RFH+F  G+CSCRDYW
Sbjct: 510 RVMKNLRICHDCHCFMKYASDVFEREIIIRDRNRFHHFSKGSCSCRDYW 558



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 171/376 (45%), Gaps = 52/376 (13%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           L  +AS   S+ YA SIFD     +   FN +IR  A++S   S +S F  M    V P+
Sbjct: 28  LSCAASAPASLSYARSIFDLIAFPDTFAFNTIIRAHADSSPSFS-LSLFSKMTMAGVSPD 86

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
             T+PFV K+ A L     G  LH L+ K G + D +V+  L   Y   G    A K F+
Sbjct: 87  HFTFPFVLKACARLQT---GLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAFE 143

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-------PKK------------- 228
           E PE++    ++ W+ +I   +K G+  +A+ LF  M       P +             
Sbjct: 144 EMPERD----LVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVVSAISIL 199

Query: 229 ---NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
               +  W+                 +L+D F R G ++++  +F++M E+ V++WTA+I
Sbjct: 200 GDLELGKWIRGFISRNGLEFTVSLGTALVDMFSRCGCIEESMRVFDEMGERNVLTWTALI 259

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           NG + +G + +AL MF++M + G + +  T    L AC+  G +  G  V   I  N++G
Sbjct: 260 NGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHVFESIR-NEYG 318

Query: 329 LKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           ++        +VD+  + G + EA   V G     + + W  ++     H   E A +  
Sbjct: 319 MEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIRPNSIIWRTLLGACVNHNYIELAEKVK 378

Query: 386 KKMMYSGTEPDGTVFL 401
           +K+    +  DG   L
Sbjct: 379 EKINELDSYHDGDYVL 394



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 12/221 (5%)

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M  AGV  + FT    L ACA+   L+ G+ +H+ +    F     +   L+  Y  CG
Sbjct: 77  KMTMAGVSPDHFTFPFVLKACAR---LQTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCG 133

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAIL 404
            ++ A   F E  E+DL++W++MI   A +G   +A+  F++M   GT +PD  + L+++
Sbjct: 134 FLDFALKAFEEMPERDLVSWSSMIACFAKNGFGYEALALFQRMQLVGTVKPDEVIVLSVV 193

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464
           +A    G ++L   +         +E +V   T +V++ SR G      + S   F    
Sbjct: 194 SAISILGDLELG-KWIRGFISRNGLEFTVSLGTALVDMFSRCG----CIEESMRVFD--- 245

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
           ++  ++  ++  L N  A  GR  +  R+   M+    + D
Sbjct: 246 EMGERNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPD 286


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  304 bits (779), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 172/467 (36%), Positives = 264/467 (56%), Gaps = 36/467 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  CS I  L +  ++   + +   +S      SL++ + +  ++  A ++F+++ E+ 
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V W+AM++G+++ G   +AL MF +M   G+  ++ ++V  LSACA VGAL+ G  VH 
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHA 217

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI      +   + TAL++MYAKCG IE A  +F E + KD   W++MI GLAIHG  E 
Sbjct: 218 YIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAED 277

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+  F +M  +  +P+   F+ IL+AC + G V     ++ SM  +  IEPS++H+  +V
Sbjct: 278 ALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSM-LELGIEPSMEHYGCMV 336

Query: 441 NLLSRVGQDSQGY---------------------------QNSQNSFTKLLQLKPKHPSS 473
           +LL R G   + Y                           Q ++    KLL+L+P    +
Sbjct: 337 DLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAEN 396

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEI 531
           Y++L+N+YA+  + + V+ VR +M+   IK  PG + IEV+G VH F  G   H  A+EI
Sbjct: 397 YIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEI 456

Query: 532 HSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
              L D+       GY P    VLH +  EEKE  L  HSE+LA+A+GL++T    TI+I
Sbjct: 457 KKTLRDVALKILISGYKPFVSVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRI 516

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           VK L +CGDCH + K  SKI  REI++RD  RFH F +GTCSC+DYW
Sbjct: 517 VKNLRVCGDCHEVTKIISKIYDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 172/351 (49%), Gaps = 53/351 (15%)

Query: 47  LRQIHAQIILH--NLFASSRITTQLISSASLHK--SIDYALSIFDHFTPKNLHIFNVLIR 102
           LRQIHA+I+ H   + + S + ++++S A+L    + DYA  IF       +  +N +IR
Sbjct: 4   LRQIHARILTHVPPISSVSFLISKILSFAALSPFGNFDYARKIFSQIPNPGIFAYNSVIR 63

Query: 103 G-LAENSHFQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
           G L      +  I  F  M+ +    PN  T  FV K+ + +  L  G+ +H  I++SG 
Sbjct: 64  GCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGF 123

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
               +V+  L + Y +  +   A KVFDE  E+N    ++ W+ +++G +++G + +A+ 
Sbjct: 124 SSSPYVQSSLVNFYSKCEEITIARKVFDEITERN----LVCWSAMVSGYARLGMINEALI 179

Query: 221 LF------GMMPKK----------------NVASWV-----------------SLIDGFM 241
           +F      G+ P +                ++  WV                 +LI+ + 
Sbjct: 180 MFREMQVVGIEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMYA 239

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           + G ++KA E+F++M  K   +W++MI G + +G AE AL +F +M +A  + N  T + 
Sbjct: 240 KCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIG 299

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA 350
            LSACA  G +  G R   + S  + G++ ++     +VD+  + G I+ A
Sbjct: 300 ILSACAHGGLVSDGKRY--WSSMLELGIEPSMEHYGCMVDLLCRGGLIDEA 348



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 107/206 (51%), Gaps = 3/206 (1%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMING-FSQNGEAEKALAMFFQMLDAGV-RANDFTVVS 301
           G+   A ++F Q+P  G+ ++ ++I G       +++ + +F  M+  G    N FT+  
Sbjct: 38  GNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNPNTFTMAF 97

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L AC+ + ALE G ++H  I  + F     + ++LV+ Y+KC  I  A  VF E  E++
Sbjct: 98  VLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERN 157

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           L+ W+AM+ G A  G   +A+  F++M   G EPD    + +L+AC   G + +   +  
Sbjct: 158 LVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALDIG-KWVH 216

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVG 447
           +      I   ++ +T ++N+ ++ G
Sbjct: 217 AYIKKRMIHVDLELNTALINMYAKCG 242



 Score = 40.0 bits (92), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 101/237 (42%), Gaps = 17/237 (7%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +HA I    +     + T LI+  +    I+ A  IFD    K+   ++ +I GLA +
Sbjct: 213 KWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIH 272

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  ++ F  M     +PN +T+  +  + A   L+S G+     +++ G+E      
Sbjct: 273 GLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDGKRYWSSMLELGIEPSMEHY 332

Query: 168 VHLADMYVQLGKTRGA--FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV----EL 221
             + D+  + G    A  F +   TP+       ++W  L+   +K   L+KA     +L
Sbjct: 333 GCMVDLLCRGGLIDEAYDFALIIPTPDP------VIWRTLLVAYTKNRMLQKAEMVAGKL 386

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM----INGFSQN 274
             + P K   +++ L + +     L+K   + + M E G+ +        ++GF  N
Sbjct: 387 LELEPWK-AENYIILANLYASVSQLEKVSHVRKMMKENGIKALPGCTSIEVDGFVHN 442


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 200/662 (30%), Positives = 314/662 (47%), Gaps = 86/662 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R++HA ++  +      +   LI+       +  A  +FD    ++   +N +I G  EN
Sbjct: 155 REVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLFDKMPTRDRISWNAMISGYFEN 214

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M  LS+ P+ +T   V  +   L    LG  LH  +V++  + +  V 
Sbjct: 215 DECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDERLGTQLHSYVVRTAYDGNISVY 274

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC------SKIGYLRKAVEL 221
             L  MY+ +G  + A  VF       +   V+ W  +I+GC       K     K +E+
Sbjct: 275 NSLIQMYLSVGHWKEAESVFSGM----ECRDVVSWTTIISGCVDNLLPDKALETYKTMEI 330

Query: 222 FGMMPKK-NVASWVS--------------------------------LIDGFMRKGDLKK 248
            G MP +  +AS +S                                LID + +   ++K
Sbjct: 331 TGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVVVANSLIDMYSKCKRIEK 390

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F Q+P+K V+SWT++ING   N    +AL +FF+ +    + N  T++SALSACA+
Sbjct: 391 ALEIFHQIPDKDVISWTSVINGLRINNRCFEAL-IFFRKMILKSKPNSVTLISALSACAR 449

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           VGAL  G  +H +      G  G +  A++D+Y +CG +  A   F    EKD+  W  +
Sbjct: 450 VGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMRTALNQF-NLNEKDVGAWNIL 508

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           + G A  G+    ++ FK+M+ S   PD   F+++L AC  SG V   L +F  M+ +Y 
Sbjct: 509 LTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACSRSGMVTEGLEYFQRMKVNYH 568

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP-------------------- 468
           I P++KH+  VV+LL R G+      N  + F + + +KP                    
Sbjct: 569 ITPNLKHYACVVDLLGRAGK-----LNEAHEFIERMPIKPDPAIWGALLNACRIHRHVLL 623

Query: 469 -------------KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
                        +    Y+LL N+YA  G+W +VA+VR  M+   +  DPG S++EV G
Sbjct: 624 GELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEEGLIVDPGCSWVEVKG 683

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKL 573
            VH F +G   H   +EI+  LE      +  G+       +  I+  K +    HSE+ 
Sbjct: 684 KVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGIQTSKADIFCGHSERQ 743

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSC 632
           A+A+ LI + PG  I + K L +C  CHS +K+ SKI +REI +RDT +FH+FKDG CSC
Sbjct: 744 AIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVRDTEQFHHFKDGLCSC 803

Query: 633 RD 634
            D
Sbjct: 804 GD 805



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 218/488 (44%), Gaps = 63/488 (12%)

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML 121
           S R+   L+S       +  A ++F     ++L  +NVL+ G  +   F   +  +  +L
Sbjct: 68  SVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRIL 127

Query: 122 RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
              +RP+  T+P V +S A    L  GR +H  +V+   + D  V   L  MYV+ G   
Sbjct: 128 WAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVV 187

Query: 182 GAFKVFDETPEKNKSESVLLWNVLING--------------------------------- 208
            A  +FD+ P +++    + WN +I+G                                 
Sbjct: 188 SARMLFDKMPTRDR----ISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVI 243

Query: 209 --CSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
             C  +G  R   +L   + +     N++ + SLI  ++  G  K+A  +F  M  + VV
Sbjct: 244 SACELLGDERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVV 303

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SWT +I+G   N   +KAL  +  M   G   ++ T+ S LSACA +G L+ G+++H   
Sbjct: 304 SWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELA 363

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
                 L   +  +L+DMY+KC  IE A  +F +  +KD+++WT++I GL I+ R  +A+
Sbjct: 364 ERTGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEAL 423

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL-----ALNFFDSMRFDYFIEPSVKHHT 437
            +F+KM+   ++P+    ++ L+AC   G +       A      M FD F+        
Sbjct: 424 IFFRKMILK-SKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLP------N 476

Query: 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
            +++L  R G+     + + N F     L  K   ++ +L   YA +G+   V  +   M
Sbjct: 477 AILDLYVRCGR----MRTALNQF----NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRM 528

Query: 498 QRRSIKKD 505
               I  D
Sbjct: 529 VESEINPD 536


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/579 (32%), Positives = 306/579 (52%), Gaps = 79/579 (13%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  V     S + +  G+ +H  ++K+  E   ++R  L  +Y +      A +V DE P
Sbjct: 13  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK------------------ 227
           E+N    V+ W  +I+G S+ GY  +A+ LF      G  P                   
Sbjct: 73  ERN----VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQ 128

Query: 228 --KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
             + + S V             SL+D + + G + +A  +F+ +PE+ VVS TA+I+G++
Sbjct: 129 LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 188

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q G  E+AL +F ++   G+R+N  T  S L+A + + AL+ G +VH+++          
Sbjct: 189 QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVV 248

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +  +L+DMY+KCG++  +  +F    E+ +++W AM+ G + HG   +A++ FK M    
Sbjct: 249 LQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEEN 308

Query: 393 -TEPDGTVFLAILTACWYSGQVKLALNFFDSM--RFDYFIEPSVKHHTVVVNLLSRVGQD 449
             +PD   FLA+L+ C + G     L  F  M  + D F EP ++H+  VV+L  R G+ 
Sbjct: 309 KVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGF-EPEIEHYGCVVDLFGRAGRV 367

Query: 450 SQGYQ----------------------NSQNSFT------KLLQLKPKHPSSYVLLSNIY 481
            + ++                        QN         +LL+++ ++  +YV+LSN+Y
Sbjct: 368 EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 427

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIM 539
           A+ GRW DV  VR LM+ +++ K+PG S+IE++  +H F A    H   +E+ +K+ ++ 
Sbjct: 428 ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 487

Query: 540 AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
              +E GY+P    VL+++ +E KE+ L  HSEKLALAFGLI T  GT ++I+K L IC 
Sbjct: 488 IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 547

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCH+  K+ S++  RE+ LRD  RFH+   GTCSC DYW
Sbjct: 548 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 160/364 (43%), Gaps = 37/364 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   +++   SS+  +  RQIH+ +I  +  +   + + L+   +    I  A  +F
Sbjct: 110 NEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 169

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++     +I G A+    +  +  F  + R  +R N +TY  V  +++ L+ L 
Sbjct: 170 DGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALD 229

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  ++++ + +   ++  L DMY + G    + ++FD  PE+    +V+ WN ++
Sbjct: 230 HGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER----TVISWNAML 285

Query: 207 NGCSKIGYLRKAVELFGMMPKKN-----VASWVSLIDGFMRKGDLKKAGELFEQMP---- 257
            G SK G  R+AVELF +M ++N       ++++++ G    G   +  E+F +M     
Sbjct: 286 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD 345

Query: 258 --EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
             E  +  +  +++ F + G  E+A     +M         F   +A+      G+L   
Sbjct: 346 GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM--------PFEPTAAI-----WGSLLGA 392

Query: 316 VRVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
            RVH  +   +F  +  +            L ++YA  G  +    V    KEK ++   
Sbjct: 393 CRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEP 452

Query: 367 AMIW 370
              W
Sbjct: 453 GRSW 456



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 29/253 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           SN +T   +++ +    +    RQ+H+ ++   L     +   LI   S   S+ Y+  I
Sbjct: 210 SNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRI 269

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSL 144
           FD    + +  +N ++ G +++   +  +  F  M   + V+P+ +T+      +A LS 
Sbjct: 270 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTF------LAVLSG 323

Query: 145 LSLG----RGLHCLI----VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            S G    RGL         K G E +      + D++ + G+   AF+   + P +   
Sbjct: 324 CSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE--- 380

Query: 197 ESVLLWNVLINGCS-----KIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
            +  +W  L+  C       IG    R+ +E+      +N  ++V L + +   G     
Sbjct: 381 PTAAIWGSLLGACRVHQNVHIGEFVARRLLEI----ESENAGNYVILSNLYASAGRWDDV 436

Query: 250 GELFEQMPEKGVV 262
             + E M EK V+
Sbjct: 437 RTVRELMKEKAVI 449


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/577 (32%), Positives = 298/577 (51%), Gaps = 73/577 (12%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TY  + K  A    L  G+ +H  +VK G   D  +   L +MY + G    A  VFD+ 
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-ASWVSLIDG---------- 239
            EKN    V+ WN +I   ++ G  ++A+ LF  M  + V A+ V+LI+           
Sbjct: 86  QEKNAD--VISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSE 143

Query: 240 ----------------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
                                       F +  ++  A  +F+ +P K +V+W  M+  +
Sbjct: 144 EEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVY 203

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           SQN + +KA+ +F  M   GV+ +  T ++ + ACA + A   G  VH+ I+ +   +  
Sbjct: 204 SQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDV 263

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
           A+GTA++  Y KCG ++ A  +F    +K+ +TW+A++   A +G   +AI+ + +M+  
Sbjct: 264 ALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQG 323

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--- 448
           G E +G  FL +L AC ++G+    +++F SM  D+ + P  +H+  +++LL R GQ   
Sbjct: 324 GLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQL 383

Query: 449 -----DSQGYQNSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAA 483
                +S  Y+   +++  LL                    +L P+    Y+LLSN+Y++
Sbjct: 384 SEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSS 443

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
            GR  +  R R  M+ R I K PG S IEV   VH F A    H     IH+++E + A 
Sbjct: 444 TGRMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKAR 503

Query: 542 AREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
            +E GY+     VL ++ +EEKE+ L  HSE+LA+AFGLI T PGT + IVK L +C DC
Sbjct: 504 VKEAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDC 563

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           H+ +K  SK+  R+IV+RD  RFH+F++G CSC DYW
Sbjct: 564 HAAVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 130/294 (44%), Gaps = 41/294 (13%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N +T  + I    S  S ++ R +HA  +   L + + + T L++     K++D A ++
Sbjct: 125 ANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAV 184

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    KNL  +N ++   ++N   +  I  F FM    V+P+ +T+  +  + A+L+  
Sbjct: 185 FDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAH 244

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------- 194
           + GR +H  I  SG+  D  +   +   Y + G+   A  +FD   +KN           
Sbjct: 245 TEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAY 304

Query: 195 -----KSESVLLWNVLING---------------CSKIG-------YLRKAVELFGMMPK 227
                ++E++ L++ ++ G               CS  G       Y    +  FG++P 
Sbjct: 305 AQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPV 364

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKA 280
                +++LID   R G L+ + +L   MP E    +W A++     +G+ ++ 
Sbjct: 365 --FEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRG 416


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 163/430 (37%), Positives = 243/430 (56%), Gaps = 39/430 (9%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-------AGVRANDFT 298
           +  A  +FE +P      W  MI GF+ +G    +L ++ +M++       +GV  N  +
Sbjct: 527 IDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVS 586

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
           ++S L AC  +GAL  G   H+Y+    F     + TA++DMY+KCG+++ A  +F ET 
Sbjct: 587 ILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETA 646

Query: 359 EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            KDL+ W+AMI    IHG   +AI  F +M+ +G  P    F  +L+AC +SG ++    
Sbjct: 647 GKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKM 706

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---------------- 462
           +F  M  ++ I   + ++  +V+LL R GQ S+     +N   +                
Sbjct: 707 YFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIH 766

Query: 463 ------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                       L  L P H   +VLLSNIYAA+ RW +V +VR +M RR   K  G+S 
Sbjct: 767 NNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSL 826

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           +E +  VH+F  G   H   +++++KLE++ A  +  GY+P T++VLH+I+EE KE AL 
Sbjct: 827 VEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALS 886

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
            HSE+LA+AFGLI T+PGTT++I K L ICGDCH+ +K  SKI  R I++RD  RFH F+
Sbjct: 887 YHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFE 946

Query: 627 DGTCSCRDYW 636
           DG CSC DYW
Sbjct: 947 DGVCSCGDYW 956



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 197/429 (45%), Gaps = 77/429 (17%)

Query: 34  IISLIHSSNSTKQLRQIHAQI----ILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           ++ L  + N+ + + Q+H+Q+    ILH+ F ++++ +     ASL      A  +FD  
Sbjct: 7   LVDLFQACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQA----ARKVFDET 62

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
              N+H++N  +R       ++  +  F  M+  +   P+  T P   K+ A L +L LG
Sbjct: 63  PHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELG 122

Query: 149 RGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDE---------------TPE 192
           + +H    K+  +  D FV   L ++Y + G+   A KVF+E                 +
Sbjct: 123 KVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQ 182

Query: 193 KNKSESVL-----------------LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS 235
            N  E  L                 L N L+N  +K G  + A  LF  MP+K+V SW +
Sbjct: 183 NNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWST 242

Query: 236 LIDGFMRKGDLKKAGELFEQMPEK-----------------------------------G 260
           +I  +       +A  LF +M EK                                    
Sbjct: 243 MIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKD 302

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSW A+++G++QNG A K++ +F  ML  G++ +   VV  L+A +++G  +  + +H 
Sbjct: 303 VVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHG 362

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           Y+  + F     +G +L+++Y+KCG++  A  +F     +D++ W++MI    IHGR  +
Sbjct: 363 YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 422

Query: 381 AIQYFKKMM 389
           A++ F +M+
Sbjct: 423 ALEIFDQMI 431



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 124/300 (41%), Gaps = 65/300 (21%)

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           TYPF +  ++  ++ + G           ++YD+ +    A MYV   +   A  VF++ 
Sbjct: 489 TYPFQAADMSKSNIFAYG-----------LQYDSRILTKFAIMYVSFNRIDAASIVFEDI 537

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------------------- 230
           P    +    LWNV+I G +  G    ++EL+  M +K +                    
Sbjct: 538 P----NPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLA 593

Query: 231 ---------ASW-----------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                      W                  +++D + + G L  A  LF++   K +V W
Sbjct: 594 CGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCW 653

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           +AMI  +  +G   KA+ +F QM+ AGVR +  T    LSAC+  G LE G +++  +  
Sbjct: 654 SAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEG-KMYFQLMT 712

Query: 325 NDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
            +F +   +     +VD+  + G + EA  L+     E D   W +++    IH   + A
Sbjct: 713 EEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLA 772



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/470 (21%), Positives = 183/470 (38%), Gaps = 54/470 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSI 85
           + +  T +++    +N  ++   + +Q+++ + F     +   L++  +       A ++
Sbjct: 169 DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANL 228

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     K++  ++ +I   A N      ++ F  M+     PN +T     ++ A    L
Sbjct: 229 FSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNL 288

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+ +H    K  V  D    V L   Y Q G    +  VF            +    +
Sbjct: 289 EEGKKIH----KIAVWKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKI 344

Query: 206 INGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   S++G  ++A+ L G + +     NV    SLI+ + + G L  A +LF+ M  + V
Sbjct: 345 LAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDV 404

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS---------ALSACA----- 307
           V W++MI  +  +G   +AL +F QM+           +S         A+++C      
Sbjct: 405 VIWSSMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHI 464

Query: 308 --KVGAL---------------------EAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
             KV A                      +A     + I          I T    MY   
Sbjct: 465 PWKVKAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSF 524

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT------ 398
             I+AAS+VF +        W  MI G A  GR+  +++ + KMM  G +PD +      
Sbjct: 525 NRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNR 584

Query: 399 -VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
              L++L AC   G ++    +F S       E  +   T ++++ S+ G
Sbjct: 585 VSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCG 633



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 114/252 (45%), Gaps = 20/252 (7%)

Query: 52  AQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
           + I  + L   SRI T+          ID A  +F+        ++NV+IRG A +  F 
Sbjct: 500 SNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFL 559

Query: 112 SCISHFVFMLRLSVRP-------NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           S +  +  M+   ++P       NR++   V  +  +L  L  G   H  ++++G E+D 
Sbjct: 560 SSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDI 619

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            V   + DMY + G    A  +FDET  K+    ++ W+ +I      G+ RKA++LF  
Sbjct: 620 LVATAIMDMYSKCGSLDLARCLFDETAGKD----LVCWSAMIASYGIHGHGRKAIDLFDQ 675

Query: 225 MPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNG 275
           M K  V     ++  ++      G L++    F+ M E+ V++     +  M++   + G
Sbjct: 676 MVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAG 735

Query: 276 EAEKALAMFFQM 287
           +  +A+ +   M
Sbjct: 736 QLSEAVDLIENM 747



 Score = 40.0 bits (92), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 40/193 (20%), Positives = 80/193 (41%), Gaps = 10/193 (5%)

Query: 24  KPSNN---ITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHK 77
           KP N+        I+S++ +  +   LR+    H+ +I         + T ++   S   
Sbjct: 574 KPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCG 633

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           S+D A  +FD    K+L  ++ +I     + H +  I  F  M++  VRP+ +T+  V  
Sbjct: 634 SLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 693

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVR-VHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           + +   LL  G+    L+ +  V          + D+  + G+   A  + +  P +  +
Sbjct: 694 ACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDA 753

Query: 197 ESVLLWNVLINGC 209
               +W  L+  C
Sbjct: 754 S---IWGSLLGAC 763


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/636 (29%), Positives = 310/636 (48%), Gaps = 79/636 (12%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           S    +++++H       + +   +   LI +    K ++ A  +FD    +++  +  L
Sbjct: 91  SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 150

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
                +    +  +  F  M    V+PN +T   +  + A L  L  G+ +H   V+ G+
Sbjct: 151 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 210

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             + FV   L  +Y +    R A  VFD                                
Sbjct: 211 VVNLFVCSALVSLYAKCLSVREARMVFD-------------------------------- 238

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGE 276
              +MP ++V SW  ++  + +  + +K   LF +M   GV     +W A+I G  +NG 
Sbjct: 239 ---LMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGR 295

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI----SCNDFGLKGA 332
           +E+A+ MF +M   G + N+ T+ S L AC+    L  G  +H Y+       D      
Sbjct: 296 SEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDL----T 351

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
             TAL+ MYAKCG++  +  VF   + KD++ W  MI   A+HG  ++A+  F KM+ S 
Sbjct: 352 STTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR 411

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +P+   F  +L+ C +S  V+  +  F+SM  D+ +EP   H++ VV++ SR G+ ++ 
Sbjct: 412 VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEA 471

Query: 453 YQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y+  Q                             S  KL +++P +P +YV L NI    
Sbjct: 472 YKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 531

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGA 542
             W + ++VR LM+ R I K PG S+++V   VH F  G      + +I++ L++++   
Sbjct: 532 KMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKM 591

Query: 543 REQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           +  GY P T++VL +I +EEK E+L  HSEKLA+AFG++     +TI++ K L ICGDCH
Sbjct: 592 KMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCH 651

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + +KY SK+    IV+RD+ RFH+FK+G CSC+D W
Sbjct: 652 NAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 687



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--- 234
           G +  A K++    E+     + ++      C+  G   +  E+     +  V S V   
Sbjct: 57  GLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVG 116

Query: 235 -SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +LI  + +   ++ A  +F+ +  + VVSWT++ + + + G   K + +F +M  +GV+
Sbjct: 117 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 176

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  TV S L ACA++  L++G  +H +   +   +   + +ALV +YAKC ++  A +V
Sbjct: 177 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 236

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F     +D+++W  ++     +  YE+    F KM   G   D   + A++  C  +G+ 
Sbjct: 237 FDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRS 296

Query: 414 KLALNFFDSMR 424
           + A+  F  M+
Sbjct: 297 EEAVEMFRKMQ 307



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LI   +  GD  +A +LF+ +P+    + + +I+  + +G + +A+ ++  + + G++ +
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 77

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
               ++A  ACA  G       VH+  +         +G AL+  Y KC  +E A  VF 
Sbjct: 78  MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 137

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +   +D+++WT++       G   + +  F++M +SG +P+     +IL AC
Sbjct: 138 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 189



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 75/393 (19%), Positives = 145/393 (36%), Gaps = 77/393 (19%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           ++SL     S ++ R +   +   ++ + + + T    +    K     L +       +
Sbjct: 220 LVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRAD 279

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
              +N +I G  EN   +  +  F  M ++  +PN +T   +  + +    L +G+ +HC
Sbjct: 280 EATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHC 339

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
            + +     D      L  MY + G    +  VFD                         
Sbjct: 340 YVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFD------------------------- 374

Query: 214 YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                     MM +K+V +W ++I      G+ K+A  LF++M                 
Sbjct: 375 ----------MMRRKDVVAWNTMIIANAMHGNGKEALFLFDKM----------------- 407

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
                         L + V+ N  T    LS C+    +E GV++ N +  +      A 
Sbjct: 408 --------------LLSRVQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDAN 453

Query: 334 G-TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
             + +VD+Y++ G + EA   + G   E     W A++    ++   E A    KK+   
Sbjct: 454 HYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFE- 512

Query: 392 GTEPDG-----TVFLAILTACWYS--GQVKLAL 417
             EP+      ++F  ++TA  +S   QV++ +
Sbjct: 513 -IEPNNPGNYVSLFNILVTAKMWSEASQVRILM 544



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K   KP N IT + I+     S + +  ++IH  +  H        TT L+   +    +
Sbjct: 308 KMGFKP-NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDL 366

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + + ++FD    K++  +N +I   A + + +  +  F  ML   V+PN +T+  V    
Sbjct: 367 NLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGC 426

Query: 140 ASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           +   L+  G  +   + +   VE DA     + D+Y + G+   A+K     P +  + +
Sbjct: 427 SHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASA 486

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGE 251
              W  L+  C     + K VEL  +  KK       N  ++VSL +  +      +A +
Sbjct: 487 ---WGALLAACR----VYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQ 539

Query: 252 LFEQMPEKGV 261
           +   M E+G+
Sbjct: 540 VRILMKERGI 549



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%)

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G  L+ +    G+   A  +F    + D  T + +I  L  HG   +AI+ +  +   G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 393 TEPDGTVFLAILTACWYSGQ 412
            +PD  VFLA   AC  SG 
Sbjct: 74  IKPDMPVFLAAAKACAVSGD 93


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/579 (32%), Positives = 306/579 (52%), Gaps = 79/579 (13%)

Query: 132  YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
            Y  V     S + +  G+ +H  ++K+  E   ++R  L  +Y +      A +V DE P
Sbjct: 480  YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539

Query: 192  EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK------------------ 227
            E+N    V+ W  +I+G S+ GY  +A+ LF      G  P                   
Sbjct: 540  ERN----VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQ 595

Query: 228  --KNVASWV-------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
              + + S V             SL+D + + G + +A  +F+ +PE+ VVS TA+I+G++
Sbjct: 596  LGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYA 655

Query: 273  QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
            Q G  E+AL +F ++   G+R+N  T  S L+A + + AL+ G +VH+++          
Sbjct: 656  QLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVV 715

Query: 333  IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
            +  +L+DMY+KCG++  +  +F    E+ +++W AM+ G + HG   +A++ FK M    
Sbjct: 716  LQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEEN 775

Query: 393  -TEPDGTVFLAILTACWYSGQVKLALNFFDSM--RFDYFIEPSVKHHTVVVNLLSRVGQD 449
              +PD   FLA+L+ C + G     L  F  M  + D F EP ++H+  VV+L  R G+ 
Sbjct: 776  KVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGF-EPEIEHYGCVVDLFGRAGRV 834

Query: 450  SQGYQ----------------------NSQNSFT------KLLQLKPKHPSSYVLLSNIY 481
             + ++                        QN         +LL+++ ++  +YV+LSN+Y
Sbjct: 835  EEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLY 894

Query: 482  AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIM 539
            A+ GRW DV  VR LM+ +++ K+PG S+IE++  +H F A    H   +E+ +K+ ++ 
Sbjct: 895  ASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELS 954

Query: 540  AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
               +E GY+P    VL+++ +E KE+ L  HSEKLALAFGLI T  GT ++I+K L IC 
Sbjct: 955  IKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICV 1014

Query: 599  DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+  K+ S++  RE+ LRD  RFH+   GTCSC DYW
Sbjct: 1015 DCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/364 (22%), Positives = 160/364 (43%), Gaps = 37/364 (10%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   +++   SS+  +  RQIH+ +I  +  +   + + L+   +    I  A  +F
Sbjct: 577 NEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 636

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++     +I G A+    +  +  F  + R  +R N +TY  V  +++ L+ L 
Sbjct: 637 DGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALD 696

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H  ++++ + +   ++  L DMY + G    + ++FD  PE+    +V+ WN ++
Sbjct: 697 HGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER----TVISWNAML 752

Query: 207 NGCSKIGYLRKAVELFGMMPKKN-----VASWVSLIDGFMRKGDLKKAGELFEQMP---- 257
            G SK G  R+AVELF +M ++N       ++++++ G    G   +  E+F +M     
Sbjct: 753 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD 812

Query: 258 --EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
             E  +  +  +++ F + G  E+A     +M         F   +A+      G+L   
Sbjct: 813 GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKM--------PFEPTAAI-----WGSLLGA 859

Query: 316 VRVHNYISCNDFGLKGAIG---------TALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
            RVH  +   +F  +  +            L ++YA  G  +    V    KEK ++   
Sbjct: 860 CRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEP 919

Query: 367 AMIW 370
              W
Sbjct: 920 GRSW 923



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337
           E  L M  Q L+   +  D    S L+ C    A+  G RVH ++    +     + T L
Sbjct: 463 EALLEMGIQGLEVEFQGYD----SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRL 518

Query: 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
           + +Y KC  +  A  V  E  E+++++WTAMI G +  G   +A+  F +M+ SGT P+ 
Sbjct: 519 IVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE 578

Query: 398 TVFLAILTACWYSGQVKLA 416
             F  +LT+C  S   +L 
Sbjct: 579 FTFATVLTSCTSSSGFQLG 597



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 105/253 (41%), Gaps = 29/253 (11%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           SN +T   +++ +    +    RQ+H+ ++   L     +   LI   S   S+ Y+  I
Sbjct: 677 SNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRI 736

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSL 144
           FD    + +  +N ++ G +++   +  +  F  M   + V+P+ +T+      +A LS 
Sbjct: 737 FDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTF------LAVLSG 790

Query: 145 LSLG----RGLHCLI----VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
            S G    RGL         K G E +      + D++ + G+   AF+   + P +   
Sbjct: 791 CSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFE--- 847

Query: 197 ESVLLWNVLINGCS-----KIGYL--RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKA 249
            +  +W  L+  C       IG    R+ +E+      +N  ++V L + +   G     
Sbjct: 848 PTAAIWGSLLGACRVHQNVHIGEFVARRLLEI----ESENAGNYVILSNLYASAGRWDDV 903

Query: 250 GELFEQMPEKGVV 262
             + E M EK V+
Sbjct: 904 RTVRELMKEKAVI 916


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 166/435 (38%), Positives = 246/435 (56%), Gaps = 34/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI+ +   GD++ A  +F++M  + VVS+ AMI    ++    +AL +F +M   G++ 
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKP 237

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
              T++S LSACA +GALE G  +H+YI          + TAL+DMYAKCG++E A  VF
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF 297

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            + + +D   W+ M+   A HG   +AI  F++M   G +PD   FL +L AC +SG V 
Sbjct: 298 QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVS 357

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-------------------- 454
             L +FDSMR +Y I   +KH+  V +LL+R GQ  + Y+                    
Sbjct: 358 EGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSA 416

Query: 455 --------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                     +  F ++L+L   H   YV+ SN+ A  GRW+++  VR LM  + + K P
Sbjct: 417 CAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVP 476

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH--NIKEEK 562
           G S IE++  VH F AG   H  ++E    +++++   +  GY+P T  V H    +EEK
Sbjct: 477 GCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEK 536

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TR 621
             +L  HSEKLA++FGL+ T PGTT++IVK L +C DCHS+ K  S +  R I+LRD  R
Sbjct: 537 ATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNR 596

Query: 622 FHYFKDGTCSCRDYW 636
           FH+F+DG CSC DYW
Sbjct: 597 FHHFEDGVCSCGDYW 611



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 180/437 (41%), Gaps = 64/437 (14%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII-------LHNLFA 61
           LT   +P    KS + P ++     +++ +    S + L Q+HA  +        H  F 
Sbjct: 6   LTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFV 65

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISH---- 116
           +  +T      A     + YA  +FD    P ++  +N L+RG A               
Sbjct: 66  TRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARV 125

Query: 117 FVFMLRLSVRPNRLTYPFVS--KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
           FV M+   V P+  TY FVS  K+ AS      GR  H + VK+G     +V   L +MY
Sbjct: 126 FVRMMEEGVAPD--TYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMY 183

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------ 228
            + G  R A  +FD    +   E V+ +N +I    +     +A+ LF  M  K      
Sbjct: 184 AECGDVRAARVMFD----RMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTS 239

Query: 229 ----------------NVASWV-----------------SLIDGFMRKGDLKKAGELFEQ 255
                            +  W+                 +LID + + G L+ A  +F+ 
Sbjct: 240 VTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQD 299

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           M  +   +W+ M+  ++ +G   +A++MF +M   G++ +D T +  L AC+  G +  G
Sbjct: 300 MESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEG 359

Query: 316 VRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGL 372
           ++  +  S  ++G+   I     + D+ A+ G +E A     E   K   + W  ++   
Sbjct: 360 LQYFD--SMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSAC 417

Query: 373 AIHGRYEQAIQYFKKMM 389
           A HG  +   + F++++
Sbjct: 418 AGHGDVDMGKRVFERIL 434


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 176/520 (33%), Positives = 283/520 (54%), Gaps = 53/520 (10%)

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL---------WNVLINGCSKI 212
           Y+ F  +H  +++     TRG  +  + +P       +++         +  L+   SK 
Sbjct: 84  YNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMIVSRIEPDTHTYPFLLKAISKS 143

Query: 213 GYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
             +R+   +  +  +    S V    SL+  +   GD + A  +FE M ++ +V+  ++I
Sbjct: 144 LNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVI 203

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           NGF+ NG   +AL +F +M   GV  + FTVVS LSA A++GALE G RVH Y+      
Sbjct: 204 NGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLR 263

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +  +L+D+YAKC  I           E++ ++WT++I GLA++G  E+A++ F++M
Sbjct: 264 ENSHVTNSLLDLYAKCDAIWEX--------ERNAVSWTSLIVGLAVNGFGEEALELFREM 315

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  P    F+ +L AC + G +    ++F  M+ ++ I P ++H+  +V+LLSR G 
Sbjct: 316 EGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGL 375

Query: 449 DSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNI 480
             Q Y+  QN                            + + LL+L+PKH   YVLLSN+
Sbjct: 376 VKQAYEYIQNMPVQPNAVTWRTLLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNL 435

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDI 538
           Y +E RW DV  +R  M +  +KK  G+S +E+   V+ F  G   H  ++++++ LE I
Sbjct: 436 YTSECRWADVQLIRRSMLKDGVKKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKI 495

Query: 539 MAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
               + +GY+P T  VL +I+EE KE+AL  HSEK A+AF  + T PGTTI+++K L +C
Sbjct: 496 TELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVC 555

Query: 598 GDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            DCH  +K  +K+  REIV+RD  RFH+F+ G+CSC+DYW
Sbjct: 556 ADCHMAIKLMAKVYDREIVIRDRGRFHHFRGGSCSCKDYW 595



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 11/188 (5%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           NV +WV           L  A  +F  +    V +W  M  G++++     AL  + QM+
Sbjct: 74  NVFTWV-----------LSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMI 122

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            + +  +  T    L A +K   +  G  +H+    N F     +  +L+ +YA CG+ E
Sbjct: 123 VSRIEPDTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTE 182

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
           +A  VF   +++DL+   ++I G A++GR  +A+  F++M   G EPDG   +++L+A  
Sbjct: 183 SAHNVFELMRDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASA 242

Query: 409 YSGQVKLA 416
             G ++L 
Sbjct: 243 ELGALELG 250



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 58/277 (20%), Positives = 112/277 (40%), Gaps = 33/277 (11%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T   ++  I  S + ++   IH+  I +   +   +   L+   +     + A ++F+  
Sbjct: 132 TYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELM 191

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             ++L     +I G A N      ++ F  M    V P+  T   +  + A L  L LGR
Sbjct: 192 RDRDLVAXISVINGFALNGRPSEALTLFREMSAEGVEPDGFTVVSLLSASAELGALELGR 251

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQL-----------------------GKTRGAFKV 186
            +H  ++K G+  ++ V   L D+Y +                        G    A ++
Sbjct: 252 RVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEXERNAVSWTSLIVGLAVNGFGEEALEL 311

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIG-------YLRKAVELFGMMPKKNVASWVSLIDG 239
           F E   +    S + +  ++  CS  G       Y R+  E FG+MP+  +  +  ++D 
Sbjct: 312 FREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDYFRRMKEEFGIMPR--IEHYGCMVDL 369

Query: 240 FMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNG 275
             R G +K+A E  + MP +   V+W  ++   + +G
Sbjct: 370 LSRAGLVKQAYEYIQNMPVQPNAVTWRTLLGACTIHG 406


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/636 (29%), Positives = 310/636 (48%), Gaps = 79/636 (12%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           S    +++++H       + +   +   LI +    K ++ A  +FD    +++  +  L
Sbjct: 177 SGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSL 236

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160
                +    +  +  F  M    V+PN +T   +  + A L  L  G+ +H   V+ G+
Sbjct: 237 SSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVRHGM 296

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             + FV   L  +Y +    R A  VFD                                
Sbjct: 297 VVNLFVCSALVSLYAKCLSVREARMVFD-------------------------------- 324

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGE 276
              +MP ++V SW  ++  + +  + +K   LF +M   GV     +W A+I G  +NG 
Sbjct: 325 ---LMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGR 381

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI----SCNDFGLKGA 332
           +E+A+ MF +M   G + N+ T+ S L AC+    L  G  +H Y+       D      
Sbjct: 382 SEEAVEMFRKMQKMGFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDL----T 437

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
             TAL+ MYAKCG++  +  VF   + KD++ W  MI   A+HG  ++A+  F KM+ S 
Sbjct: 438 STTALLYMYAKCGDLNLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSR 497

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            +P+   F  +L+ C +S  V+  +  F+SM  D+ +EP   H++ VV++ SR G+ ++ 
Sbjct: 498 VQPNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEA 557

Query: 453 YQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y+  Q                             S  KL +++P +P +YV L NI    
Sbjct: 558 YKFIQGMPMEPTASAWGALLAACRVYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTA 617

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK--LAKEIHSKLEDIMAGA 542
             W + ++VR LM+ R I K PG S+++V   VH F  G      + +I++ L++++   
Sbjct: 618 KMWSEASQVRILMKERGITKTPGCSWLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKM 677

Query: 543 REQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           +  GY P T++VL +I +EEK E+L  HSEKLA+AFG++     +TI++ K L ICGDCH
Sbjct: 678 KMAGYKPDTDYVLQDIDQEEKAESLCNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCH 737

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + +KY SK+    IV+RD+ RFH+FK+G CSC+D W
Sbjct: 738 NAIKYMSKVVGVIIVVRDSLRFHHFKNGNCSCKDLW 773



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 121/251 (48%), Gaps = 4/251 (1%)

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--- 234
           G +  A K++    E+     + ++      C+  G   +  E+     +  V S V   
Sbjct: 143 GLSNEAIKIYSSLQERGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVG 202

Query: 235 -SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
            +LI  + +   ++ A  +F+ +  + VVSWT++ + + + G   K + +F +M  +GV+
Sbjct: 203 NALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVK 262

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            N  TV S L ACA++  L++G  +H +   +   +   + +ALV +YAKC ++  A +V
Sbjct: 263 PNPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMV 322

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F     +D+++W  ++     +  YE+    F KM   G   D   + A++  C  +G+ 
Sbjct: 323 FDLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRS 382

Query: 414 KLALNFFDSMR 424
           + A+  F  M+
Sbjct: 383 EEAVEMFRKMQ 393



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 86/172 (50%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LI   +  GD  +A +LF+ +P+    + + +I+  + +G + +A+ ++  + + G++ +
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKPD 163

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
               ++A  ACA  G       VH+  +         +G AL+  Y KC  +E A  VF 
Sbjct: 164 MPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFD 223

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +   +D+++WT++       G   + +  F++M +SG +P+     +IL AC
Sbjct: 224 DLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 275



 Score = 46.6 bits (109), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 37/80 (46%)

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +G  L+ +    G+   A  +F    + D  T + +I  L  HG   +AI+ +  +   G
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 393 TEPDGTVFLAILTACWYSGQ 412
            +PD  VFLA   AC  SG 
Sbjct: 160 IKPDMPVFLAAAKACAVSGD 179



 Score = 46.2 bits (108), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 107/250 (42%), Gaps = 16/250 (6%)

Query: 20  KSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI 79
           K   KP N IT + I+     S + +  ++IH  +  H        TT L+   +    +
Sbjct: 394 KMGFKP-NEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDL 452

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + + ++FD    K++  +N +I   A + + +  +  F  ML   V+PN +T+  V    
Sbjct: 453 NLSRNVFDMMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGC 512

Query: 140 ASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           +   L+  G  +   + +   VE DA     + D+Y + G+   A+K     P +  + +
Sbjct: 513 SHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASA 572

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGE 251
              W  L+  C     + K VEL  +  KK       N  ++VSL +  +      +A +
Sbjct: 573 ---WGALLAACR----VYKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQ 625

Query: 252 LFEQMPEKGV 261
           +   M E+G+
Sbjct: 626 VRILMKERGI 635


>gi|357450099|ref|XP_003595326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484374|gb|AES65577.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 740

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 206/670 (30%), Positives = 329/670 (49%), Gaps = 95/670 (14%)

Query: 8   RLTTAIAPTTNIKSSHKPSNNI-TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           R  T  +  +N     KP N+I     + +L    N+   L+QIH QII   L   +   
Sbjct: 125 RNITKSSSNSNFLDFMKPKNHIFNHPTLQTLQQKCNNFNTLKQIHTQIITTGLSFQTYCL 184

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML----- 121
           + LI  +S   ++ YA  IF++ +   + ++N LI  L   ++ Q+ I H  F L     
Sbjct: 185 SHLIKISSKF-NLPYAFKIFNYISNPTIFLYNTLISSLINQTN-QNQI-HLAFSLYNKIL 241

Query: 122 -RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
              +++PN  T+P + K+              C   +S   Y   +  H+          
Sbjct: 242 TNKNLQPNSFTFPSLFKA--------------CCSNQSWFHYGPLLHTHVLK-------- 279

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
                 F + P  N  ++ LL     N  +K G +  +  +F  + + ++A+W  +++ +
Sbjct: 280 ------FLQPPFDNFVQASLL-----NFYAKYGKMCVSRYIFDRINEPDLATWNVILNAY 328

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
            R          F+                FS      ++L +F  M   G+R N+ T+V
Sbjct: 329 ARSSSYHSYSNSFDDA-------------DFSL-----ESLYLFRDMQVIGIRPNEVTIV 370

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE- 359
           + +SAC+ +GA+  G  VH ++  N   +   +GTA VDMY+KCG +  A  VF +  E 
Sbjct: 371 ALISACSNLGAVSQGFWVHCFVLRNKIKMNRFVGTAFVDMYSKCGCLNLACQVFDKMPEN 430

Query: 360 -KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
            +D   +TAMI G A+HG   QA++ ++KM + G  PD   F+  + AC + G V+  L 
Sbjct: 431 DRDSFCYTAMIGGFAVHGYGNQALELYRKMKFKGLVPDSATFVVTMFACSHVGLVEEGLE 490

Query: 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------DSQGYQNS------------- 456
            F SM+  + +EP ++H+  +++LL R G+         D     N+             
Sbjct: 491 IFKSMKEVHGVEPKLEHYGCLIDLLGRAGRLKEAEEWLADMPMKPNAVLWRSLLGAARIH 550

Query: 457 ------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
                 + + TKL++L+P+   +YVLLSN+YA+ GR  DV RVR LM+   + K PG+S 
Sbjct: 551 GNLGVGEVALTKLIELEPETSGNYVLLSNMYASVGRVNDVKRVRKLMKHHGVNKLPGFSL 610

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALG 567
           +E+ G +H F  G   H  +KEI+ K+ +I +   E G+   T   L +++EE KE  L 
Sbjct: 611 VEIKGAMHEFLTGDRSHPFSKEIYLKIAEINSRLEEYGHKARTSEALFDLEEEDKEGVLS 670

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSE+LA+AF LI +     I+I+K L +CGDCH+  K  S    REI++RD  RFH+FK
Sbjct: 671 YHSERLAIAFALIASPSSLAIRIIKNLRVCGDCHAFTKLISVAYHREIIVRDRNRFHHFK 730

Query: 627 DGTCSCRDYW 636
           DG+CSC DYW
Sbjct: 731 DGSCSCLDYW 740


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 189/670 (28%), Positives = 326/670 (48%), Gaps = 82/670 (12%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           ++ + +HA  +L  +     ++  L+S  +    +  A  +FD    ++   +N L+ G 
Sbjct: 131 REGKAVHALSVLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGY 190

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS--LLSLGRGLHCLIVKSGVEY 162
                    +  F  M R  +  N      V K  A     ++ +   +H  +VK+G + 
Sbjct: 191 VRAGAQDDMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDS 250

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK------IGYLR 216
           D F+   +  MY + G    A  +F    + N    V+++N +I G  +         LR
Sbjct: 251 DVFLASAMVGMYAKKGALSEAVALFKSVLDPN----VVVFNAMIAGLCRDEAAVGTDVLR 306

Query: 217 KAVELF------GMMPKKNVASWV---------------------------------SLI 237
           +A+ L+      GM P +   S V                                 +LI
Sbjct: 307 EALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALI 366

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D ++  G ++     F  +P++ VV+WTAMI+G  QN   E+AL +F ++L AG++ + F
Sbjct: 367 DLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPF 426

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+ S ++ACA +     G ++  + + + FG   A+G + + MYA+ G++ AA   F E 
Sbjct: 427 TISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQEM 486

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
           +  D+++W+A+I   A HG    A+++F +M+ +   P+   FL +LTAC + G V   L
Sbjct: 487 ESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGGLVDEGL 546

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY---------------------- 453
            ++++M+ +Y + P++KH T VV+LL R G+  D++ +                      
Sbjct: 547 KYYETMKEEYALSPTIKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVIWRSLLASCRI 606

Query: 454 ----QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
               +  Q    ++++L+P   +SYV L NIY   G     +++R +M+ R +KK+PG S
Sbjct: 607 HRDMERGQLVADRIMELQPSSSASYVNLYNIYLDAGELSLASKIRDVMKERGVKKEPGLS 666

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALG 567
           +IE+   VH F AG   H  +  I+SKL ++++   +      +     +    ++  + 
Sbjct: 667 WIELRSGVHSFVAGDKSHPESNAIYSKLAEMLSKIDKLTATDASSTKSDDTIRNEQSWMN 726

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFK 626
            HSEKLA+A GLI       I+++K L +C DCH  MK  SK  +REIVLRD  RFH+F+
Sbjct: 727 WHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKLISKSEKREIVLRDAIRFHHFR 786

Query: 627 DGTCSCRDYW 636
           DG+CSC DYW
Sbjct: 787 DGSCSCADYW 796



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 184/418 (44%), Gaps = 54/418 (12%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           + S ++ +    +HA I+  +   S  +   L+  A+  +   +A  + D     N   F
Sbjct: 24  LRSCSAPRHAAAVHAHIVRAHPSPSLFLRNTLL--AAYCRLGGHARRLLDEMPRTNAVSF 81

Query: 98  NVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           N+LI   +     ++ +  F    R + VR +R TY     + +    L  G+ +H L V
Sbjct: 82  NLLIDAYSRAGQPEASLETFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSV 141

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
             G+    FV   L  MY + G    A +VFD   E++     + WN L++G  + G   
Sbjct: 142 LEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDD----VSWNALVSGYVRAGAQD 197

Query: 217 KAVELFGMM------------------------PKKNVASWV-----------------S 235
             + +F MM                        P  ++A+ V                 +
Sbjct: 198 DMLRVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASA 257

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA------EKALAMFFQMLD 289
           ++  + +KG L +A  LF+ + +  VV + AMI G  ++  A       +AL+++ ++  
Sbjct: 258 MVGMYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQS 317

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
            G+   +FT  S + AC   G +E G ++H  +  + F     IG+AL+D+Y   G +E 
Sbjct: 318 RGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALIDLYLNSGCMED 377

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
               F    ++D++TWTAMI G   +  +E+A+  F +++ +G +PD     +++ AC
Sbjct: 378 GFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNAC 435



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 120/262 (45%), Gaps = 19/262 (7%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAVELFGMM 225
           L D Y + G+   + + F       +S  V      +   +  CS+ G LR+   +  + 
Sbjct: 84  LIDAYSRAGQPEASLETF---ARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALS 140

Query: 226 PKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKAL 281
             + +A  V    SL+  + R GD+ +A ++F+   E+  VSW A+++G+ + G  +  L
Sbjct: 141 VLEGIAGGVFVSNSLVSMYARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDML 200

Query: 282 AMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVD 339
            +F  M  +G+  N F + S +  CA      ++    VH  +    F     + +A+V 
Sbjct: 201 RVFAMMRRSGIGLNSFALGSVIKCCAGSDDPVMDIAAAVHGCVVKAGFDSDVFLASAMVG 260

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL----AIHGR--YEQAIQYFKKMMYSGT 393
           MYAK G +  A  +F    + +++ + AMI GL    A  G     +A+  + ++   G 
Sbjct: 261 MYAKKGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGM 320

Query: 394 EPDGTVFLAILTACWYSGQVKL 415
           EP    F +++ AC  +G ++ 
Sbjct: 321 EPTEFTFSSVIRACNLAGDIEF 342



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/261 (19%), Positives = 108/261 (41%), Gaps = 8/261 (3%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           L  A++  + ++S        T + +I   + +   +  +QIH Q++ H       I + 
Sbjct: 305 LREALSLYSEVQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSA 364

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI        ++     F     +++  +  +I G  +N  F+  ++ F  +L   ++P+
Sbjct: 365 LIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMISGCVQNELFERALTLFHELLGAGLKPD 424

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
             T   V  + ASL++   G  + C   KSG      +      MY + G    A + F 
Sbjct: 425 PFTISSVMNACASLAVARTGEQIQCFATKSGFGRFTAMGNSCIHMYARSGDVHAAVRRFQ 484

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKG 244
           E     +S  ++ W+ +I+  ++ G  R A+  F  M    V     +++ ++      G
Sbjct: 485 EM----ESHDIVSWSAVISSHAQHGCARDALRFFNEMVDAKVVPNEITFLGVLTACSHGG 540

Query: 245 DLKKAGELFEQMPEKGVVSWT 265
            + +  + +E M E+  +S T
Sbjct: 541 LVDEGLKYYETMKEEYALSPT 561


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 217/672 (32%), Positives = 338/672 (50%), Gaps = 94/672 (13%)

Query: 48   RQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            R++HA +I   L  +   I   L++  +   +I  A S+F+    K+   +N LI GL +
Sbjct: 879  REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 938

Query: 107  NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
            N   +     F+ M R    P+  T      S ASL  + LG  +HC  +K G++ D  V
Sbjct: 939  NECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDVSV 998

Query: 167  RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-GYLRKAVELFGMM 225
               L  +Y + G      KVF   PE ++    + WN +I   S     + +AV+ F  M
Sbjct: 999  SNALLALYAETGCFTECLKVFSLMPEYDQ----VSWNSVIGALSDSEASVSQAVKYFLEM 1054

Query: 226  PKK----------NVASWVS-----------------------------LIDGFMRKGDL 246
             +           N+ S VS                             L+  + + G++
Sbjct: 1055 MRGGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEM 1114

Query: 247  KKAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
             +  ++F +M E +  VSW +MI+G+  N    KA+ + + M+  G R + FT  + LSA
Sbjct: 1115 NECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSA 1174

Query: 306  CAKVGALEAGVRVHNYISCNDFGLKGA------IGTALVDMYAKCGNIEAASLVFGETKE 359
            CA V  LE G+ VH   +C   G++        +G+ALVDMY+KCG I+ AS  F     
Sbjct: 1175 CASVATLERGMEVH---AC---GIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPL 1228

Query: 360  KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALN 418
            +++ +W +MI G A HG  E+A++ F +MM  G  PD     L +L+AC + G V+    
Sbjct: 1229 RNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFE 1288

Query: 419  FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ-DSQG-YQNS-------------------- 456
             F SM   Y + P V+H + +V+LL R G+ D  G + NS                    
Sbjct: 1289 HFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRA 1348

Query: 457  --------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                    + +   LL+L+P++  +YVLL+N+YA+  +W+DVA+ R  M+  ++KK+ G 
Sbjct: 1349 NGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGC 1408

Query: 509  SYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEAL 566
            S++ +   VH F AG   H     I+ KL ++    R+ GY+P T++ L +++ E +E L
Sbjct: 1409 SWVTMKDGVHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEEL 1468

Query: 567  GC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHY 624
               HSEK+A+AF L + +    I+I+K L +CGDCHS   Y SKI  R+IVLRD+ RFH+
Sbjct: 1469 LSYHSEKIAVAFVLTRQS-ALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHH 1527

Query: 625  FKDGTCSCRDYW 636
            F+DG CSC DYW
Sbjct: 1528 FEDGKCSCGDYW 1539



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 117/447 (26%), Positives = 188/447 (42%), Gaps = 64/447 (14%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S++ T   +I+    S  +++ R++H Q I +    +  ++  LI+       +  A  +
Sbjct: 542 SSSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKL 601

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--ASLS 143
           FD  + +NL  +  LI G  +N       + F  M+R    PN   +    ++   +  S
Sbjct: 602 FDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPS 661

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ-LGKTRGAFKVFDETPEKNKSESVLLW 202
              LG  +H LI K+    D  V   L  MY   L     A  VFD    +N     + W
Sbjct: 662 GCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNS----ISW 717

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA-----------SWVS---------------- 235
           N +I+  S+ G    A +LF  M K+ +            S ++                
Sbjct: 718 NSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQM 777

Query: 236 ------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                             L+ GF R G    A  +FEQM  + VVS   ++ G  +  + 
Sbjct: 778 LARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQG 837

Query: 278 EKALAMFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVR----VHNYI---SCNDFGL 329
           E A  +F +M D  G+ ++ + V+  LSA ++   LE G R    VH ++     ND   
Sbjct: 838 EAAAKVFHEMKDLVGINSDSYVVL--LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDN-- 893

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
           K AIG  LV+MYAK G I  A  VF    EKD ++W ++I GL  +   E A + F +M 
Sbjct: 894 KVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMR 953

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLA 416
            +G+ P     ++ L++C   G + L 
Sbjct: 954 RTGSMPSNFTLISTLSSCASLGWIMLG 980



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 172/416 (41%), Gaps = 69/416 (16%)

Query: 49   QIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            QIH  +I    + S  +   ++ S   S   S + A S+FD    +N   +N +I   + 
Sbjct: 668  QIHG-LISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSR 726

Query: 107  NSHFQSCISHFVFM----LRLSVRPNRLTY-PFVSKSVASLSL-LSLGRGLHCLIVKSGV 160
                 S    F  M    L  S +PN  T+   ++ + +S+   L +   +   + KSG 
Sbjct: 727  RGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGF 786

Query: 161  EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
              D +V   L   + + G T  A  +F++   +N    V+  N L+ G  K      A +
Sbjct: 787  LQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRN----VVSMNGLMVGLVKQKQGEAAAK 842

Query: 221  LFGMMPKK---NVASWVSLIDGF------------------------------------- 240
            +F  M      N  S+V L+  F                                     
Sbjct: 843  VFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLV 902

Query: 241  ---MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
                + G +  A  +FE M EK  VSW ++I+G  QN  +E A   F +M   G   ++F
Sbjct: 903  NMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNF 962

Query: 298  TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT------ALVDMYAKCGNIEAAS 351
            T++S LS+CA +G +  G ++H    C+  GLK  + T      AL+ +YA+ G      
Sbjct: 963  TLISTLSSCASLGWIMLGEQIH----CD--GLKLGLDTDVSVSNALLALYAETGCFTECL 1016

Query: 352  LVFGETKEKDLLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
             VF    E D ++W ++I  L+       QA++YF +MM  G       F+ IL+A
Sbjct: 1017 KVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSA 1072



 Score = 42.7 bits (99), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 56/263 (21%), Positives = 103/263 (39%), Gaps = 29/263 (11%)

Query: 27   NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
            ++ T   ++S   S  + ++  ++HA  I   + +   + + L+   S    IDYA   F
Sbjct: 1164 DSFTFATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFF 1223

Query: 87   DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
            +    +N++ +N +I G A + H +  +  F  M+     P+      V+  +  LS  S
Sbjct: 1224 ELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDH-----VAPLLGVLSACS 1278

Query: 147  LGRGLHCLIVKSGVE--------YDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSE 197
                 H   V+ G E        Y    RV H + M   LG+     +V D         
Sbjct: 1279 -----HVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKP 1333

Query: 198  SVLLWNVLINGCSKIG-----YLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
            +VL+W  ++  C +         R+A E+   +  +N  ++V L + +      +   + 
Sbjct: 1334 NVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKA 1393

Query: 253  FEQMPEKGV-----VSWTAMING 270
               M E  V      SW  M +G
Sbjct: 1394 RXAMKEAAVKKEAGCSWVTMKDG 1416


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 182/576 (31%), Positives = 297/576 (51%), Gaps = 76/576 (13%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  + +S      +  G+ LH  I + G+ ++  +   L ++Y        A  +FD   
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----------------- 228
           ++N    + LWNV+I G +  G    A+ L+      G++P K                 
Sbjct: 64  KRN----LFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAME 119

Query: 229 ----------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                           +V    +LID + + G ++ A ++F+++ E+ VV W +M+  +S
Sbjct: 120 EGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYS 179

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           QNG+ +++LA+   M   G++  + T V +++A A  G L  G  +H Y   + F     
Sbjct: 180 QNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDK 239

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           + TAL+DMYAK G++  A  +F   +EK +++W AMI G A+HG   +A+  FK+M    
Sbjct: 240 VKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMK-GK 298

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
             PD   F+ +L AC + G +      F SM  D+ I P+V+H+T +++LL   G+  + 
Sbjct: 299 VLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358

Query: 453 Y----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y                            +  + +  KL++L+P    +YV+LSN+YA  
Sbjct: 359 YKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQA 418

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGA 542
           G+W  VAR+R LM  + +KK    S+IEV   VH F  E   H  ++ I+++L+      
Sbjct: 419 GKWDGVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLM 478

Query: 543 REQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
           +E GY P    V H++++ EK + + CHSE+LA+AFGLI T+ GT + I+K L IC DCH
Sbjct: 479 KEAGYAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCH 538

Query: 602 SLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             +K+ SKI++REI +RD  R+H+FKDG CSC D+W
Sbjct: 539 VAIKFISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 195/400 (48%), Gaps = 50/400 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+HA+I    +  +  + T+L++   +  S+  A  +FD  + +NL ++NV+IRG A N
Sbjct: 21  KQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAWN 80

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             ++  IS +  M    + P++ T+PFV K+ ++LS +  G+ +H  +++SG+E D FV 
Sbjct: 81  GPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVG 140

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY + G    A +VFD+  E++    V+ WN ++   S+ G   +++ L      
Sbjct: 141 AALIDMYAKCGCVESARQVFDKIDERD----VVCWNSMLATYSQNGQPDESLALCRVMAF 196

Query: 223 --------------------GMMPKKNVA---SW-----------VSLIDGFMRKGDLKK 248
                               G++P+       SW            +L+D + + G +  
Sbjct: 197 NGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNV 256

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  LFE + EK VVSW AMI G++ +G A +AL +F +M    V  +  T V  L+AC+ 
Sbjct: 257 ARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSH 315

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETK-EKDLLTW 365
            G L  G ++H     +DF +   +   T ++D+   CG +E A  +  E + E D   W
Sbjct: 316 GGLLNEG-KMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVW 374

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            A++    IHG  E      +K++    EPD      IL+
Sbjct: 375 GALLHSCKIHGNVEMGELALEKLVE--LEPDDGGNYVILS 412



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 72/349 (20%), Positives = 137/349 (39%), Gaps = 40/349 (11%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI 101
           ++ ++ ++IH  +I   L +   +   LI   +    ++ A  +FD    +++  +N ++
Sbjct: 116 SAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSML 175

Query: 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVE 161
              ++N      ++    M    ++P   T+     + A   LL  G+ LH    + G E
Sbjct: 176 ATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFE 235

Query: 162 YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221
            +  V+  L DMY + G    A  +F+   EK     V+ WN +I G +  G+  +A++L
Sbjct: 236 SNDKVKTALMDMYAKSGSVNVARSLFELLEEKR----VVSWNAMITGYAMHGHANEALDL 291

Query: 222 FGMMPKKNVASWVSLI--------DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
           F  M  K +   ++ +         G + +G +     + +      V  +T MI+    
Sbjct: 292 FKEMKGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGH 351

Query: 274 NGEAEKALAMFFQML---DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            G  E+A  +  +M    DAGV                 GAL    ++H  +   +  L+
Sbjct: 352 CGRLEEAYKLIMEMRVEPDAGVW----------------GALLHSCKIHGNVEMGELALE 395

Query: 331 ---------GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
                    G     L +MYA+ G  +  + +      K L    A  W
Sbjct: 396 KLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSW 444


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  303 bits (777), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/618 (29%), Positives = 319/618 (51%), Gaps = 74/618 (11%)

Query: 54  IILHNLFASSRITT--QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
           ++L N+  +  I T   +++  +    ++ A   FD    +++  +N +    A+    +
Sbjct: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPK 240

Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
             ++ F  ML   + P+  T+     S +S+   +L   +  +I +  +  ++FV+  L 
Sbjct: 241 EALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALL 300

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
           DM+ + G    A  +FDE                                  +  ++N  
Sbjct: 301 DMHAKFGNLEIARNIFDE----------------------------------LGSQRNAV 326

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA- 290
           +W  +I  + R G L  A ELF+ MP++ VVSW +MI G++QNGE+  ++ +F +M+   
Sbjct: 327 TWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCM 386

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            ++ ++ T+ S LSAC  +GAL+    V + +   +  L  +   +L+ MY+KCG++  A
Sbjct: 387 DIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADA 446

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F     +D++++  +I G A +G  ++AI+    M   G EPD   ++ +LTAC ++
Sbjct: 447 HRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHA 506

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------ 458
           G +    N F S++      P+V H+  +V+LL R G+  +     Q+            
Sbjct: 507 GLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGS 561

Query: 459 ----------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                           + +KL +L+P++  +YVLLSNIYA+ GRW+DV RVR +M++  +
Sbjct: 562 LLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGL 621

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK  G S++E  G VH+F  G   H+ +K+I+  L ++    +  G++      L +++E
Sbjct: 622 KKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEE 681

Query: 561 EKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E++E  LG HSEKLA+ F L+ +  GTTI++VK L IC DCH+ +K  SK+  REIV+RD
Sbjct: 682 EEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRD 741

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH F +G CSC DYW
Sbjct: 742 NNRFHCFSEGMCSCHDYW 759



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 247/506 (48%), Gaps = 51/506 (10%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPK 92
           +++L    ++ +QLRQ H  ++ ++L + +  ++  LI+   LH    Y  SIF      
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +  +++ +++  +        +S F     L++RP    Y ++ K +A  S    G   H
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-LAGKS----GNMFH 118

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G   D F+R  + DMY + G+   A  +F++  E+  ++    WN +I+GC K 
Sbjct: 119 AYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLAD----WNSMISGCWKS 174

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G   +AV LF MMP +N+ +W S++ G+ + GDL+ A   F++MPE+ VVSW AM + ++
Sbjct: 175 GNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYA 234

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q    ++AL +F QML+ G+  +D T V  +S+C+ +G       +   I      L   
Sbjct: 235 QKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSF 294

Query: 333 IGTALVDMYAKCGNIEAASLVFGE--------------------------------TKEK 360
           + TAL+DM+AK GN+E A  +F E                                  ++
Sbjct: 295 VKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKR 354

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNF 419
           D+++W +MI G A +G    +I+ FK+M+     +PD     ++L+AC + G +KL+   
Sbjct: 355 DVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWV 414

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
            D +R +  I+  +     ++ + S+ G  +  ++  Q   T+ +        S+  L +
Sbjct: 415 LDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDV-------VSFNTLIS 466

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKD 505
            +AA G  K+  ++   M+   I+ D
Sbjct: 467 GFAANGHGKEAIKLVLTMEEEGIEPD 492


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 184/618 (29%), Positives = 319/618 (51%), Gaps = 74/618 (11%)

Query: 54  IILHNLFASSRITT--QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111
           ++L N+  +  I T   +++  +    ++ A   FD    +++  +N +    A+    +
Sbjct: 181 VVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPK 240

Query: 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
             ++ F  ML   + P+  T+     S +S+   +L   +  +I +  +  ++FV+  L 
Sbjct: 241 EALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALL 300

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA 231
           DM+ + G    A  +FDE                                  +  ++N  
Sbjct: 301 DMHAKFGNLEIARNIFDE----------------------------------LGSQRNAV 326

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA- 290
           +W  +I  + R G L  A ELF+ MP++ VVSW +MI G++QNGE+  ++ +F +M+   
Sbjct: 327 TWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCM 386

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
            ++ ++ T+ S LSAC  +GAL+    V + +   +  L  +   +L+ MY+KCG++  A
Sbjct: 387 DIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADA 446

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
             +F     +D++++  +I G A +G  ++AI+    M   G EPD   ++ +LTAC ++
Sbjct: 447 HRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSHA 506

Query: 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------------ 458
           G +    N F S++      P+V H+  +V+LL R G+  +     Q+            
Sbjct: 507 GLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQSMPMKPHAGVYGS 561

Query: 459 ----------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                           + +KL +L+P++  +YVLLSNIYA+ GRW+DV RVR +M++  +
Sbjct: 562 LLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDVKRVREMMKKGGL 621

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK  G S++E  G VH+F  G   H+ +K+I+  L ++    +  G++      L +++E
Sbjct: 622 KKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFVADKSCALRDVEE 681

Query: 561 EKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E++E  LG HSEKLA+ F L+ +  GTTI++VK L IC DCH+ +K  SK+  REIV+RD
Sbjct: 682 EEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMISKLEGREIVVRD 741

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH F +G CSC DYW
Sbjct: 742 NNRFHCFSEGMCSCHDYW 759



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 247/506 (48%), Gaps = 51/506 (10%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSIFDHFTPK 92
           +++L    ++ +QLRQ H  ++ ++L + +  ++  LI+   LH    Y  SIF      
Sbjct: 4   LVALASKISNIRQLRQFHGHLVHNSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTSSPSP 63

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +  +++ +++  +        +S F     L++RP    Y ++ K +A  S    G   H
Sbjct: 64  DASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIK-LAGKS----GNLFH 118

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
             ++K G   D F+R  + DMY + G+   A  +F++  E+  ++    WN +I+GC K 
Sbjct: 119 AYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLAD----WNSMISGCWKS 174

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G   +AV LF MMP +N+ +W S++ G+ + GDL+ A   F++MPE+ VVSW AM + ++
Sbjct: 175 GNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYA 234

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q    ++AL +F QML+ G+  +D T V  +S+C+ +G       +   I      L   
Sbjct: 235 QKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSF 294

Query: 333 IGTALVDMYAKCGNIEAASLVFGE--------------------------------TKEK 360
           + TAL+DM+AK GN+E A  +F E                                  ++
Sbjct: 295 VKTALLDMHAKFGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKR 354

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNF 419
           D+++W +MI G A +G    +I+ FK+M+     +PD     ++L+AC + G +KL+   
Sbjct: 355 DVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWV 414

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
            D +R +  I+  +     ++ + S+ G  +  ++  Q   T+ +        S+  L +
Sbjct: 415 LDIVR-EKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDV-------VSFNTLIS 466

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKD 505
            +AA G  K+  ++   M+   I+ D
Sbjct: 467 GFAANGHGKEAIKLVLTMEEEGIEPD 492


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 196/672 (29%), Positives = 330/672 (49%), Gaps = 86/672 (12%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           K+ + +HA  +L  L     ++  L+S  +    +  A  +FD    ++   +N L+ G 
Sbjct: 131 KEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGY 190

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK--SVASLSLLSLGRGLHCLIVKSGVEY 162
                 +  +  F  M R ++  N      V K  S    S+  +   +H  +VK+G++ 
Sbjct: 191 LRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDT 250

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG------YLR 216
           D F+   + DMY + G    A  +F    + N    V+++N +I G  +         +R
Sbjct: 251 DLFLASAMVDMYAKRGALSEAVALFKSVLDPN----VVVFNAMIAGLCRDEAAVHKEVVR 306

Query: 217 KAVELF------GMMPKKNVASWV---------------------------------SLI 237
           +A+ L+      GM P +   S V                                 +LI
Sbjct: 307 EALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALI 366

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           D +     ++     F  +P++ VV+WTAMI+G  QN   E+ALA+F ++L  G++ + F
Sbjct: 367 DLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPF 426

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           T+ S ++ACA +  +  G ++  + + + F    A+G + + MYA+ GN+EAA   F E 
Sbjct: 427 TISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEM 486

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
           +  D+++W+A+I   A HG   QA+Q+F +M+ +   P+   FL +LTAC + G V   L
Sbjct: 487 ESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKVVPNEITFLGVLTACSHGGLVDEGL 546

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQGY---------------------- 453
            +++ M+ +Y + P+VKH T VV+LL R G+  D++ +                      
Sbjct: 547 RYYEIMKMEYGLCPTVKHCTCVVDLLGRAGRLADAEAFIRDSIFHDEPVVWQSLLGSCRI 606

Query: 454 ----QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWS 509
               +  Q    ++++L+P     YV L N+Y   G     +++R LM+ R +KK+PG S
Sbjct: 607 HRDMERGQLVADRIMELQPASSGCYVNLYNMYLDAGELSLGSKIRDLMKERGVKKEPGLS 666

Query: 510 YIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT--EWVLHNIKEEKEEA 565
           +IE+   +H F AG   H     I++KL ++++   +      +  EWV    +E+    
Sbjct: 667 WIELRSGIHSFVAGDKSHPECNAIYTKLAEMLSKIDKLTTTDTSCIEWVETTGREQN--W 724

Query: 566 LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHY 624
           + CHSEKLA+A G+I       I+++K L +C DCHS MK  SK   REI+LRD  RFH+
Sbjct: 725 MNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSECREIILRDVIRFHH 784

Query: 625 FKDGTCSCRDYW 636
           F+DG+CSC DYW
Sbjct: 785 FRDGSCSCGDYW 796



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 167/374 (44%), Gaps = 52/374 (13%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA 140
           A  + D    +N   FN+LI   +     +  +  F+   R + V+ +R TY     + +
Sbjct: 66  ARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACS 125

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
               L  G+ +H L V  G+    FV   L  MY + G    A +VFD T E++     +
Sbjct: 126 RAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDD----V 181

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPK------------------------KNVASWV-- 234
            WN L++G  ++G   + + +F +M +                        + +A  V  
Sbjct: 182 SWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHG 241

Query: 235 ---------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA-- 277
                          +++D + ++G L +A  LF+ + +  VV + AMI G  ++  A  
Sbjct: 242 CVVKAGLDTDLFLASAMVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVH 301

Query: 278 ----EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
                +AL+++ ++   G+   +FT  S + AC   G +E G ++H  +  + F     I
Sbjct: 302 KEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFI 361

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
           G+AL+D+Y     +E     F    ++D++TWTAMI G   +  +E+A+  F +++  G 
Sbjct: 362 GSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGL 421

Query: 394 EPDGTVFLAILTAC 407
           +PD     +++ AC
Sbjct: 422 KPDPFTISSVMNAC 435



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/146 (32%), Positives = 82/146 (56%), Gaps = 1/146 (0%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSA 302
           GD  +A  L ++MP +  VS+  +I+ +S+ G+ E++L  F     A  V+A+ FT  +A
Sbjct: 61  GDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAA 120

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L+AC++ G L+ G  VH             +  +LV MYA+CG++  A  VF  T+E+D 
Sbjct: 121 LAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDD 180

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKM 388
           ++W +++ G    G +E+ ++ F  M
Sbjct: 181 VSWNSLVSGYLRVGAHEEMLRVFALM 206



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/326 (22%), Positives = 139/326 (42%), Gaps = 54/326 (16%)

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG--KTRGAFKVFDETPEKNKSES 198
           S + L     +H  I ++      F+R  L   Y +LG   T  A ++ DE P +N    
Sbjct: 22  SCASLPQAAAVHGHIARAHPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRN---- 77

Query: 199 VLLWNVLINGCSKIGYLRKAVELF--------------------------GMMPKKNVAS 232
            + +N+LI+  S+ G   +++E F                          G + +  V  
Sbjct: 78  AVSFNLLIDAYSRAGQTEESLETFLHAHRAAEVKADRFTYAAALAACSRAGRLKEGKVVH 137

Query: 233 WVSLIDG--------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
            +++++G              + R GD+ +A  +F+   E+  VSW ++++G+ + G  E
Sbjct: 138 ALAVLEGLAEGVFVSNSLVSMYARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHE 197

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV--RVHNYISCNDFGLKGAIGTA 336
           + L +F  M    +  N F + S +  C+       G+   VH  +          + +A
Sbjct: 198 EMLRVFALMRRCAMGLNSFALGSVIKCCSGGDGSVRGIAEAVHGCVVKAGLDTDLFLASA 257

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL-----AIHGR-YEQAIQYFKKMMY 390
           +VDMYAK G +  A  +F    + +++ + AMI GL     A+H     +A+  + ++  
Sbjct: 258 MVDMYAKRGALSEAVALFKSVLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQS 317

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLA 416
            G EP    F +++ AC  +G ++  
Sbjct: 318 RGMEPTEFTFSSVIRACNLAGDIEFG 343



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 4/219 (1%)

Query: 12  AIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS 71
           A++  + ++S        T + +I   + +   +  +QIH Q++ H       I + LI 
Sbjct: 308 ALSLYSELQSRGMEPTEFTFSSVIRACNLAGDIEFGKQIHGQVLKHCFQGDDFIGSALID 367

Query: 72  SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131
                  ++     F     +++  +  +I G  +N  F+  ++ F  +L + ++P+  T
Sbjct: 368 LYFNSACMEDGFRCFRSVPKQDVVTWTAMISGCVQNELFERALALFHELLGVGLKPDPFT 427

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
              V  + ASL+++  G  + C   KSG +    +      MY + G    A + F E  
Sbjct: 428 ISSVMNACASLAVVRTGEQMQCFATKSGFDRFTAMGNSCIHMYARSGNVEAAIQRFQEM- 486

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV 230
              +S  V+ W+ +I+  ++ G  R+A++ F  M    V
Sbjct: 487 ---ESHDVVSWSAIISSHAQHGCARQALQFFNEMVGAKV 522


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 200/668 (29%), Positives = 321/668 (48%), Gaps = 109/668 (16%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           + L+  A  H  +D+AL IF     +++  +N++I  L+++   +  +   V M    VR
Sbjct: 230 SMLVGYAKSH-GVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVR 288

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+  TY     + A LS L  G+ LH  ++++    D +V   + ++Y + G  + A +V
Sbjct: 289 PDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRV 348

Query: 187 FDETPEKNK----------------SESVLLWN---------------VLINGC------ 209
           F    ++N                 SESV L+N                LI+GC      
Sbjct: 349 FSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDI 408

Query: 210 -----------------------------SKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
                                        +K G L+ A  +F  M ++++ SW  +I  +
Sbjct: 409 CLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAY 468

Query: 241 MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTV 299
            + G++ KA E F+ M  + V++W AM+  + Q+G  E  L M+  ML +  V  +  T 
Sbjct: 469 SQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTY 528

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
           V+    CA +GA + G ++  +       L  ++  A++ MY+KCG I  A   F     
Sbjct: 529 VTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSR 588

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
           KDL++W AMI G + HG  +QAI+ F  ++  G +PD   ++A+L+ C +SG V+    +
Sbjct: 589 KDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFY 648

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL------- 464
           FD M+ D+ I P ++H + +V+LL R G         D    + +   +  LL       
Sbjct: 649 FDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHG 708

Query: 465 -----QLKPKH------PSS--YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
                +L  KH      P S  Y+LL+ +YA  G+  D A+VR LM+ + IKK PG+S++
Sbjct: 709 NNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWM 768

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCH 569
           EVN  VH F+A    H     I  KL+++M      GY          ++ E   +   H
Sbjct: 769 EVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGY----------VRTESPRSEIHH 818

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDG 628
           SEKLA+AFG++       I I+K L IC DCH+++K  S ++ RE V+RD  RFH+FK G
Sbjct: 819 SEKLAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGG 878

Query: 629 TCSCRDYW 636
           +CSC DYW
Sbjct: 879 SCSCMDYW 886



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 155/331 (46%), Gaps = 36/331 (10%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVS 136
           S+  A+ +F     +++  +N ++ G  ++  F + +  FV M +     PN  T+  V 
Sbjct: 107 SLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVM 166

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           KS  +L    +   L  L+ K   + D  V+  L DM V+ G    A K F     + K+
Sbjct: 167 KSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQF----SRIKN 222

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
            +++  N                               S++ G+ +   +  A E+F+ M
Sbjct: 223 PTIICRN-------------------------------SMLVGYAKSHGVDHALEIFKSM 251

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           PE+ VVSW  +I+  S++G   +AL M   M   GVR +  T  S+L+ACA++ +LE G 
Sbjct: 252 PERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGK 311

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           ++H  +  N   +   + +A+V++YAKCG  + A  VF   ++++ ++WT +I G   +G
Sbjct: 312 QLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYG 371

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            + ++++ F +M       D      +++ C
Sbjct: 372 CFSESVELFNQMRAELMAVDQFALATLISGC 402



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 160/366 (43%), Gaps = 43/366 (11%)

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF-DETPEKNK 195
           +S  + S L+  R LH  ++  G+    F++  L   Y+  G    A  +  DE  E N 
Sbjct: 33  RSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN- 91

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
              V+  N+++NG +K+G L  AVELFG MP ++VASW +++ G+ + G    A ++F  
Sbjct: 92  ---VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           M                Q G++                 N FT    + +C  +G  E  
Sbjct: 149 M---------------RQTGDS---------------LPNAFTFGCVMKSCGALGWHEVA 178

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           +++   +S  D      + TALVDM  +CG ++ AS  F   K   ++   +M+ G A  
Sbjct: 179 LQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKS 238

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
              + A++ FK M     E D   +  +++A   SG+V+ AL+    M     + P    
Sbjct: 239 HGVDHALEIFKSM----PERDVVSWNMVISALSKSGRVREALDMVVDMH-GKGVRPDSTT 293

Query: 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
           +T  +   +R+     G Q        L  + P   S+ V    +YA  G +K+  RV +
Sbjct: 294 YTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMV---ELYAKCGCFKEAKRVFS 350

Query: 496 LMQRRS 501
            ++ R+
Sbjct: 351 SLRDRN 356



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 16/245 (6%)

Query: 55  ILHNLFASSRIT--TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112
           ++ N  A   I   T +I++ S   +I  A   FD  + +N+  +N ++    ++   + 
Sbjct: 448 LIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEED 507

Query: 113 CISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171
            +  +  ML    V P+ +TY  + +  A +    LG  +    VK G+  D  V   + 
Sbjct: 508 GLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVI 567

Query: 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PK 227
            MY + G+   A K FD    K+    ++ WN +I G S+ G  ++A+E+F  +     K
Sbjct: 568 TMYSKCGRISEARKAFDFLSRKD----LVSWNAMITGYSQHGMGKQAIEIFDDILNKGAK 623

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALA 282
            +  S+V+++ G    G +++    F+ M        G+  ++ M++   + G   +A  
Sbjct: 624 PDYISYVAVLSGCSHSGLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKN 683

Query: 283 MFFQM 287
           +  +M
Sbjct: 684 LIDEM 688



 Score = 40.0 bits (92), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 9/129 (6%)

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNI-EAASLVFG 355
           +  AL +C    AL     +H+ +   + GL   +     L+  Y  CG + +A +L+  
Sbjct: 28  LADALRSCGARSALTGARTLHSRLI--NVGLASVVFLQNTLLHAYLSCGALSDARNLLRD 85

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
           E  E +++T   M+ G A  G    A++ F +M       D   +  I++  + SGQ   
Sbjct: 86  EITEPNVITHNIMMNGYAKLGSLSDAVELFGRM----PTRDVASWNTIMSGYYQSGQFLN 141

Query: 416 ALNFFDSMR 424
           AL+ F SMR
Sbjct: 142 ALDIFVSMR 150


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 194/637 (30%), Positives = 330/637 (51%), Gaps = 79/637 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            Q+H  I+   L + + +   L++  S   ++  A  IF     ++   +N LI GLA+ 
Sbjct: 233 EQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQR 292

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  M    ++P+ +T   +  + AS+     G+ LH  ++K G+  D  + 
Sbjct: 293 GFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIE 352

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L D+YV+      A + F  T    ++E+V+LWNV++    ++G L ++  +F     
Sbjct: 353 GSLLDLYVKCFDIETAHEYFLTT----ETENVVLWNVMLVAYGQLGNLSESYWIFLQMQI 408

Query: 223 -GMMPKK---------------------------------NVASWVSLIDGFMRKGDLKK 248
            G+MP +                                 NV     LID + + G+L  
Sbjct: 409 EGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDT 468

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  + +++ E+ VVSWTAMI G++Q+    +AL +F +M + G+R+++    SA+SACA 
Sbjct: 469 ARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAG 528

Query: 309 VGALEAGVRVH--NYIS--CNDFGLKGAIGT-ALVDMYAKCGNIEAASLVFGETKEKDLL 363
           + AL  G ++H  +YIS    D  +  A+ +  L+ +Y+KCG+IE A   F E  EK+++
Sbjct: 529 IQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVV 588

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
           +W AMI G + HG   +A+  F++M   G  P+   F+         G++ +     D+M
Sbjct: 589 SWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFV---------GEMPIEP---DAM 636

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
            +   +     H  + +                + +   LL+L+P+  ++YVLLSN+YA 
Sbjct: 637 IWRTLLSACTVHKNIEIG---------------EFAARHLLELEPEDSATYVLLSNMYAV 681

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
            G+W    R R +M+ R +KK+PG S+IEV   +H F  G   H LA++I+  ++D+   
Sbjct: 682 SGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNER 741

Query: 542 AREQGYMPGTEWVLHNIKEEKEEALG-CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDC 600
           A E GY+     +L+++++E+++     HSEKLA+AFGL+  T    I+++K L +C DC
Sbjct: 742 AGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDC 801

Query: 601 HSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           H+ +K+ SKIS R IV+RD  RFH+F+ G CSC+DYW
Sbjct: 802 HNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 838



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/399 (26%), Positives = 184/399 (46%), Gaps = 43/399 (10%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
            QIHA+II H   +S  +   LI   S +  +D A  +F+    K+   +  +I GL++N
Sbjct: 132 EQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQN 191

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I  F  M + +V P    +  V  +   + L  LG  LH  IVK G+  + FV 
Sbjct: 192 GREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVC 251

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-- 225
             L  +Y + G    A ++F +   +++    + +N LI+G ++ G+  +A++LF  M  
Sbjct: 252 NALVTLYSRWGNLIAAEQIFSKMHRRDR----ISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 226 ------------------------PKKNVASWV-------------SLIDGFMRKGDLKK 248
                                     K + S+V             SL+D +++  D++ 
Sbjct: 308 DCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIET 367

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E F     + VV W  M+  + Q G   ++  +F QM   G+  N +T  S L  C  
Sbjct: 368 AHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTS 427

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           +GAL+ G ++H  +  + F     + + L+DMYAK G ++ A  +    +E+D+++WTAM
Sbjct: 428 LGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAM 487

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I G   H  + +A++ F++M   G   D   F + ++AC
Sbjct: 488 IAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISAC 526



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 150/323 (46%), Gaps = 44/323 (13%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +R N  TY ++ +   +   L   + LH  I KSG + +  +   L D+Y+  G+   A 
Sbjct: 6   IRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAI 65

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVS--------- 235
           K+FD+ P  N S     WN +I+G        + + LF +M  +NV    S         
Sbjct: 66  KLFDDIPSSNVS----FWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRAC 121

Query: 236 -------------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                          LID + + G +  A  +FE++  K  VSW
Sbjct: 122 SGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSW 181

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            AMI+G SQNG  ++A+ +F QM  + V    +   S LSAC K+   + G ++H +I  
Sbjct: 182 VAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVK 241

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
                +  +  ALV +Y++ GN+ AA  +F +   +D +++ ++I GLA  G  ++A+Q 
Sbjct: 242 WGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQL 301

Query: 385 FKKMMYSGTEPDGTVFLAILTAC 407
           F+KM     +PD     ++L+AC
Sbjct: 302 FEKMQLDCMKPDCVTVASLLSAC 324



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 185/413 (44%), Gaps = 36/413 (8%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           +S S    +++HA+I          + ++LI     H  +D A+ +FD     N+  +N 
Sbjct: 22  NSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNK 81

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA-SLSLLSLGRGLHCLIVKS 158
           +I GL         +  F  M+  +V P+  T+  V ++ +   +   +   +H  I+  
Sbjct: 82  VISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKAPFQVTEQIHAKIIHH 141

Query: 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN----------------KSESVLL- 201
           G      V   L D+Y + G    A  VF+    K+                + E++LL 
Sbjct: 142 GFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLF 201

Query: 202 --------------WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRK 243
                         ++ +++ C+KI   +   +L G + K  ++S      +L+  + R 
Sbjct: 202 CQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRW 261

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G+L  A ++F +M  +  +S+ ++I+G +Q G +++AL +F +M    ++ +  TV S L
Sbjct: 262 GNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLL 321

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SACA VGA   G ++H+Y+          I  +L+D+Y KC +IE A   F  T+ ++++
Sbjct: 322 SACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVV 381

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
            W  M+      G   ++   F +M   G  P+   + +IL  C   G + L 
Sbjct: 382 LWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLG 434



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 143/324 (44%), Gaps = 49/324 (15%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP + +T   ++S   S  +  + +Q+H+ +I   + +   I   L+        I+ A 
Sbjct: 311 KP-DCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAH 369

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
             F     +N+ ++NV++    +  +       F+ M    + PN+ TYP + ++  SL 
Sbjct: 370 EYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLG 429

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L LG  +H  ++KSG +++ +V   L DMY + G+   A  +     ++ + E V+ W 
Sbjct: 430 ALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGIL----QRLREEDVVSWT 485

Query: 204 VLINGCSKIGYLRKAVELFGMMPKKNV----------------------------ASWVS 235
            +I G ++     +A++LF  M  + +                             S++S
Sbjct: 486 AMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYIS 545

Query: 236 ----------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
                           LI  + + G ++ A   F +MPEK VVSW AMI G+SQ+G   +
Sbjct: 546 GYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSE 605

Query: 280 ALAMFFQMLDAGVRANDFTVVSAL 303
           A+++F +M   G+  N  T V  +
Sbjct: 606 AVSLFEEMKQLGLMPNHVTFVGEM 629



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/121 (26%), Positives = 56/121 (46%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M + G+RAN  T +     C   G+L    ++H  I  + F  +  +G+ L+D+Y   G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           ++ A  +F +    ++  W  +I GL       Q +  F  M+     PD + F ++L A
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 407 C 407
           C
Sbjct: 121 C 121


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 166/435 (38%), Positives = 246/435 (56%), Gaps = 34/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI+ +   GD++ A  +F++M  + VVS+ AMI    ++    +AL +F +M   G++ 
Sbjct: 178 TLINMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKP 237

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
              T++S LSACA +GALE G  +H+YI          + TAL+DMYAKCG++E A  VF
Sbjct: 238 TSVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVF 297

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            + + +D   W+ M+   A HG   +AI  F++M   G +PD   FL +L AC +SG V 
Sbjct: 298 QDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVS 357

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-------------------- 454
             L +FDSMR +Y I   +KH+  V +LL+R GQ  + Y+                    
Sbjct: 358 EGLQYFDSMR-EYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSA 416

Query: 455 --------NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                     +  F ++L+L   H   YV+ SN+ A  GRW+++  VR LM  + + K P
Sbjct: 417 CAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVP 476

Query: 507 GWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH--NIKEEK 562
           G S IE++  VH F AG   H  ++E    +++++   +  GY+P T  V H    +EEK
Sbjct: 477 GCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEK 536

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TR 621
             +L  HSEKLA++FGL+ T PGTT++IVK L +C DCHS+ K  S +  R I+LRD  R
Sbjct: 537 ATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNR 596

Query: 622 FHYFKDGTCSCRDYW 636
           FH+F+DG CSC DYW
Sbjct: 597 FHHFEDGVCSCGDYW 611



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 180/437 (41%), Gaps = 64/437 (14%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII-------LHNLFA 61
           LT   +P    KS + P ++     +++ +    S + L Q+HA  +        H  F 
Sbjct: 6   LTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFV 65

Query: 62  SSRITTQLISSASLHKSIDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISH---- 116
           +  +T      A     + YA  +FD    P ++  +N L+RG A               
Sbjct: 66  TRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARV 125

Query: 117 FVFMLRLSVRPNRLTYPFVS--KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY 174
           FV M+   V P+  TY FVS  K+ AS      GR  H + VK+G     +V   L +MY
Sbjct: 126 FVRMMEEGVAPD--TYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMY 183

Query: 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------ 228
            + G  R A  +FD    +   E V+ +N +I    +     +A+ LF  M  K      
Sbjct: 184 AECGDVRAARVMFD----RMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTS 239

Query: 229 ----------------NVASWV-----------------SLIDGFMRKGDLKKAGELFEQ 255
                            +  W+                 +LID + + G L+ A  +F+ 
Sbjct: 240 VTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQD 299

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           M  +   +W+ M+  ++ +G   +A++MF +M   G++ +D T +  L AC+  G +  G
Sbjct: 300 MESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEG 359

Query: 316 VRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGL 372
           ++  +  S  ++G+   I     + D+ A+ G +E A     E   K   + W  ++   
Sbjct: 360 LQYFD--SMREYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSAC 417

Query: 373 AIHGRYEQAIQYFKKMM 389
           A HG  +   + F++++
Sbjct: 418 AGHGDVDMGKRVFERIL 434


>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 568

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 162/442 (36%), Positives = 258/442 (58%), Gaps = 34/442 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           N+    +LI+ +   G L  + +LF++MP + ++SW+++I+ F++ G  ++AL +F QM 
Sbjct: 127 NIYVQNALINSYGTSGSLHASLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQ 186

Query: 289 --DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
             ++ +  +   ++S +SA + +GALE G+ VH +IS     L  ++G+AL+DMY++CG+
Sbjct: 187 LKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGD 246

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I+ +  VF E   ++++TWTA+I GLA+HGR  +A++ F  M+ SG +PD   F+ +L A
Sbjct: 247 IDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVA 306

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NS- 456
           C + G V+     F SM  +Y IEP+++H+  +V+LL R G   + +          NS 
Sbjct: 307 CSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRPNSV 366

Query: 457 ------------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                             + +  ++ +L P H   YVLLSN Y   G W     VR  M+
Sbjct: 367 IWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRNSMR 426

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
              I K+PG S + ++   H F +G   H   +EI   L  ++   +  GY P T+ VLH
Sbjct: 427 ESKIVKEPGLSLVHIDQVAHEFVSGDNSHPQWEEITRFLGSVIDTVKLGGYTPSTKNVLH 486

Query: 557 NIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           +I+EE KE +LG HSEKLA+AF L+      TI+++K L IC DCHS MK+ S    R+I
Sbjct: 487 DIQEEEKEHSLGYHSEKLAVAFVLLYHRDRKTIRVIKNLRICYDCHSFMKHVSGFFDRDI 546

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
           V+RD +RFH+F+ G+CSCRD+W
Sbjct: 547 VIRDRSRFHHFRKGSCSCRDFW 568



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 22/298 (7%)

Query: 22  SHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           SH    N+   H    +   +S      IH  ++     ++  +   LI+S     S+  
Sbjct: 87  SHMHRTNVPFDHFTFPLILKSSKLNPHCIHTLVLKLGFHSNIYVQNALINSYGTSGSLHA 146

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LRLS-VRPNRLTYPFVSKSV 139
           +L +FD    ++L  ++ LI   A+       ++ F  M L+ S + P+ +    V  +V
Sbjct: 147 SLKLFDEMPRRDLISWSSLISCFAKRGLPDEALTLFQQMQLKESDILPDGVVMLSVISAV 206

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           +SL  L LG  +H  I + GV     +   L DMY + G    + KVFDE P +N    V
Sbjct: 207 SSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGDIDRSVKVFDEMPHRN----V 262

Query: 200 LLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
           + W  LING +  G  R+A+E F      G+ P +   +++ ++      G +++   +F
Sbjct: 263 VTWTALINGLAVHGRGREALEAFYDMVESGLKPDR--IAFMGVLVACSHGGLVEEGRRVF 320

Query: 254 EQM-----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             M      E  +  +  M++   + G   +A      M    VR N     + L AC
Sbjct: 321 SSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGM---RVRPNSVIWRTLLGAC 375



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 51/248 (20%), Positives = 99/248 (39%), Gaps = 7/248 (2%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +K S    + +    +IS + S  + +    +HA I    +  +  + + LI   S    
Sbjct: 187 LKESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALIDMYSRCGD 246

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           ID ++ +FD    +N+  +  LI GLA +   +  +  F  M+   ++P+R+ +  V  +
Sbjct: 247 IDRSVKVFDEMPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLVA 306

Query: 139 VASLSLLSLGRGL-HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
            +   L+  GR +   +  + G+E       H   M   LG+     + FD         
Sbjct: 307 CSHGGLVEEGRRVFSSMWSEYGIEP---ALEHYGCMVDLLGRAGMVLEAFDFVEGMRVRP 363

Query: 198 SVLLWNVLINGCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
           + ++W  L+  C     L    KA E    +   +   +V L + +   G+  K   +  
Sbjct: 364 NSVIWRTLLGACVNHNLLVLAEKAKERIKELDPHHDGDYVLLSNAYGGVGNWVKKEGVRN 423

Query: 255 QMPEKGVV 262
            M E  +V
Sbjct: 424 SMRESKIV 431


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 191/602 (31%), Positives = 303/602 (50%), Gaps = 66/602 (10%)

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T +IS  +    +D A  +      +N+  +  LI G +        +  F  ML   + 
Sbjct: 175 TTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGIA 234

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+ +T   +  +   L  L+ G  LH L+    +     + V L DMY + G T  A +V
Sbjct: 235 PDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRAREV 294

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246
           FD                       +G  R      G  P      W ++IDG+ + G +
Sbjct: 295 FD----------------------ALGRGR------GPQP------WNAMIDGYCKVGHV 320

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
             A  LF+QM +  V+++ ++I G+   G   +AL +F +M   G+ A++FT+V  L+A 
Sbjct: 321 DIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFTMVGLLTAS 380

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           A +GAL  G  +H  I          +GTAL+DMY KCG +E A + F +   +D+ TW+
Sbjct: 381 ASLGALPQGRALHACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQMSVRDVHTWS 440

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           AMI GLA +G  + A+++F  M   G   +   ++A+LTAC +S  +     +FD MR  
Sbjct: 441 AMIGGLAFNGMGKAALEHFFWMKCDGFHANSVTYIAVLTACSHSCLLDEGRLYFDEMRLL 500

Query: 427 YFIEPSVKHHTVVVNLLSRVGQDSQG-------------------------YQN---SQN 458
           + I P ++H+  +++LL R G   +                          ++N   +QN
Sbjct: 501 HNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQTMPMQPNAVIWASILSACRVHKNVDLAQN 560

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +   LL+L+P   + YV + NIY    +W+D +++R LM++R +KK  G+S I V G VH
Sbjct: 561 AAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDASKIRRLMEKRGVKKTAGYSSIAVAGQVH 620

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLAL 575
           +F  G   H    EI   +E+I    +  GY P T  +  ++ +EEKE+AL  HSEKLA+
Sbjct: 621 KFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYSPITSQITVDVDEEEKEQALLAHSEKLAI 680

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AFGL+   P   + I+K L +C DCHS +K  S++  REI++RD +RFH+F+ G CSC D
Sbjct: 681 AFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLISRLWNREIIVRDRSRFHHFRGGVCSCND 740

Query: 635 YW 636
           +W
Sbjct: 741 FW 742



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 111/400 (27%), Positives = 176/400 (44%), Gaps = 60/400 (15%)

Query: 40  SSNSTKQLRQIHAQI-----ILHNLFAS---SRITTQLISSASLHKSIDYALSIFDHFTP 91
           +  S +Q  ++HA +     +LH   A+   + +T+ +  S  LH  + YALS+FD   P
Sbjct: 8   TPGSVRQATELHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLH--LRYALSLFDRM-P 64

Query: 92  KNLHIFNVLIRG-LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA-SLSLLSLGR 149
            +  +F+  +R     +S     I  +  M  + V P+  T+ F+ K  A   + + LGR
Sbjct: 65  CSTFLFDTALRACFRASSGPDRPIILYRRMHGVDVPPDAFTFHFLFKCCARGGAHVLLGR 124

Query: 150 GLH--CL--IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            LH  C   ++ S V   A   +H   MY +LG    A + FDE   K+    V+ W  +
Sbjct: 125 MLHAACFRTLLPSAVPLIASPIIH---MYAELGLPGDARRAFDEASVKD----VVAWTTV 177

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
           I+G +K+G L  A  L    P +NV +W  LI G+ R                       
Sbjct: 178 ISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRA---------------------- 215

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
                    G A +A+  F  ML  G+  ++ TV+  LSAC ++  L  G  +H  +   
Sbjct: 216 ---------GRAAEAVDCFNSMLSDGIAPDEVTVIGMLSACGQLKDLNFGCSLHMLVGDK 266

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTAMIWGLAIHGRYEQAIQY 384
              +   +  AL+DMYAKCG+   A  VF    + +    W AMI G    G  + A   
Sbjct: 267 RMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMIDGYCKVGHVDIARSL 326

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           F +M     + D   F +++T   + G+++ AL  F  MR
Sbjct: 327 FDQM----EDHDVITFNSLITGYIHGGRLREALLLFTKMR 362


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 206/650 (31%), Positives = 320/650 (49%), Gaps = 86/650 (13%)

Query: 64  RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM-LR 122
           ++ + L+   S    +  A  +FD    KN+  +N +I G +++  F+        M + 
Sbjct: 335 KVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWNSMIGGYSKDRDFRGAFELLRKMQME 393

Query: 123 LSVRPNRLTY----PFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQL 177
             V+ N +T     P   + +  L L    + +H   ++ G ++ D  V       Y + 
Sbjct: 394 DKVKVNEVTLLNVLPVCEEEIQFLKL----KEIHGYALRHGFIQSDELVANAFVAGYAKC 449

Query: 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-NV 230
           G    A  VF     K  S     WN LI G  + G+ RKA++L+      G+ P    +
Sbjct: 450 GSLHYAEGVFCGMESKMVSS----WNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTI 505

Query: 231 ASW--------------------------------VSLIDGFMRKGDLKKAGELFEQMPE 258
           AS                                 +SL+  +++ G +  A   F+ M E
Sbjct: 506 ASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEE 565

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K +V W  MINGFSQN     AL MF QML + +  ++ +++ AL AC++V AL  G  +
Sbjct: 566 KNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKEL 625

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H +   +       +  +L+DMYAKCG +E +  +F     K  +TW  +I G  IHG  
Sbjct: 626 HCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHG 685

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            +AI+ FK M  +G  PD   F+A+LTAC ++G V   L +   M+  + I+P ++H+  
Sbjct: 686 RKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYAC 745

Query: 439 VVNLLSRVGQ---------------DSQGYQNSQNSF-------------TKLLQLKPKH 470
           VV++L R G+               DS+ + +  +S               KLL+L P  
Sbjct: 746 VVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDK 805

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAK- 529
             +YVL+SN YA  G+W +V ++R  M+   ++KD G S+IE+ G V RF  G   L + 
Sbjct: 806 AENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQS 865

Query: 530 -EIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTT 587
            +I     ++     + GY P T  VLH ++E EK + L  HSEKLA++FGL+ T  GTT
Sbjct: 866 MKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTT 925

Query: 588 IKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +++ K L IC DCH+ +K  SKI +REI++RD  RFH+FK+G CSC DYW
Sbjct: 926 LRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 118/449 (26%), Positives = 205/449 (45%), Gaps = 80/449 (17%)

Query: 28  NITETHIISLIHSSNS-TKQLRQIHAQII-----------LHNLFASSR-------ITTQ 68
           N  ++++  ++ SSNS  KQL  +  Q+            +HN  ++S        + T+
Sbjct: 75  NFLQSNLNDVVSSSNSKPKQLIGLLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITR 134

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRP 127
           L++  S+  S   +  +F+    KNL ++N L+ G   NS F+  +  FV M+ L+   P
Sbjct: 135 LVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVP 194

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +  T P V K+   +  + LG  +H   +K+ V  D FV   L  MY + G    A KVF
Sbjct: 195 DNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVF 254

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--------GMMPKKNVASWVSLIDG 239
           D+ P++N    ++ WN ++  C + G   ++  LF        G+MP  +VA+ V++I  
Sbjct: 255 DKMPQRN----LVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMP--DVATMVTVIPL 308

Query: 240 FMRKGDLK-----------------------------KAGELFE-----QMPEKGVVSWT 265
             R+G+++                             K G L E        EK V+SW 
Sbjct: 309 CARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNEKNVISWN 368

Query: 266 AMINGFSQNGEAEKALAMFFQM-LDAGVRANDFTVVSALSACA------KVGALEAGVRV 318
           +MI G+S++ +   A  +  +M ++  V+ N+ T+++ L  C       K+  +      
Sbjct: 369 SMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALR 428

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H +I  ++      +  A V  YAKCG++  A  VF   + K + +W A+I G   +G  
Sbjct: 429 HGFIQSDEL-----VANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFP 483

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +A+  +  M  SG EPD     ++L+AC
Sbjct: 484 RKALDLYLLMRGSGLEPDLFTIASLLSAC 512



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 94/386 (24%), Positives = 173/386 (44%), Gaps = 48/386 (12%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSR-ITTQLISSASLHKSIDYALSI 85
           N +T  +++ +        +L++IH   + H    S   +    ++  +   S+ YA  +
Sbjct: 399 NEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGV 458

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F     K +  +N LI G  +N   +  +  ++ M    + P+  T   +  + A L  L
Sbjct: 459 FCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSL 518

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           S G+ +H  ++++G E D F+ + L  +YVQ GK   A   FD   EKN    ++ WN +
Sbjct: 519 SCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKN----LVCWNTM 574

Query: 206 ING-----------------------------------CSKIGYLRKAVELFGMMPKKNV 230
           ING                                   CS++  LR   EL     K ++
Sbjct: 575 INGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHL 634

Query: 231 A--SWV--SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
              S+V  SLID + + G ++++  +F+++  KG V+W  +I G+  +G   KA+ +F  
Sbjct: 635 TEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKS 694

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKC 344
           M +AG R +  T ++ L+AC   G +  G+     +  + FG+K  +     +VDM  + 
Sbjct: 695 MQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQ-SLFGIKPKLEHYACVVDMLGRA 753

Query: 345 GNIEAASLVFGETKEK-DLLTWTAMI 369
           G +  A  +  E  +K D   W++++
Sbjct: 754 GRLNEALELVNELPDKPDSRIWSSLL 779



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 143/325 (44%), Gaps = 22/325 (6%)

Query: 34  IISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           I SL+ +    K L   ++IH  ++ +       I   L+S       I  A   FD+  
Sbjct: 505 IASLLSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNME 564

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            KNL  +N +I G ++N      +  F  ML   + P+ ++      + + +S L LG+ 
Sbjct: 565 EKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKE 624

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LHC  VKS +   +FV   L DMY + G    +  +FD    K +    + WNVLI G  
Sbjct: 625 LHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE----VTWNVLITGYG 680

Query: 211 KIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGV 261
             G+ RKA+ELF  M     + +  ++++L+      G + +  E   QM      +  +
Sbjct: 681 IHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKL 740

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
             +  +++   + G   +AL +  ++ D   + +     S LS+C     L+ G +V N 
Sbjct: 741 EHYACVVDMLGRAGRLNEALELVNELPD---KPDSRIWSSLLSSCRNYRDLDIGEKVANK 797

Query: 322 ISCNDFGLKGAIGTALV-DMYAKCG 345
           +   + G   A    L+ + YA+ G
Sbjct: 798 LL--ELGPDKAENYVLISNFYARLG 820



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 85/171 (49%), Gaps = 3/171 (1%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRANDFTVVSALSACAKVG 310
           +F     K +  W A+++G+ +N     A+ +F +M+       ++FT+   + AC  V 
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            +  G  VH +           +G AL+ MY K G +E+A  VF +  +++L++W ++++
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 371 GLAIHGRYEQAIQYFKKMMY--SGTEPDGTVFLAILTACWYSGQVKLALNF 419
               +G +E++   FK ++    G  PD    + ++  C   G+V+L + F
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVF 321


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 210/667 (31%), Positives = 318/667 (47%), Gaps = 84/667 (12%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASL---HKSIDY---ALSIFDHFTPKNLHIFNVLIR 102
           ++   +++H L     IT ++  + SL   +    Y   A ++FD    KN+  +N +I 
Sbjct: 314 EVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIW 373

Query: 103 GLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASL-SLLSLGRGLHCLIVKSGV 160
           G ++   F+        M R   VR N +T   V  + +    LLSL + +H    + G 
Sbjct: 374 GYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSL-KEIHGYAFRHGF 432

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
             D  V       Y +      A +VF     K  S     WN LI   ++ G+  K+++
Sbjct: 433 LKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSS----WNALIGAHAQNGFPGKSLD 488

Query: 221 LF------GMMPKKNVASWVSL-------------IDGFMRKGDLKKA------------ 249
           LF      GM P +     + L             I GFM +  L+              
Sbjct: 489 LFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISLMSLYI 548

Query: 250 -------GEL-FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
                  G+L F++M  K +V W  MI GFSQN    +AL  F QML  G++  +  V  
Sbjct: 549 QCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIAVTG 608

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            L AC++V AL  G  VH++           +  AL+DMYAKCG +E +  +F    EKD
Sbjct: 609 VLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKD 668

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
              W  +I G  IHG   +AI+ F+ M   G  PD   FL +L AC ++G V   L +  
Sbjct: 669 EAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLG 728

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------------------------- 453
            M+  Y ++P ++H+  VV++L R GQ ++                              
Sbjct: 729 QMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDL 788

Query: 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
           +  +    KLL+L+P    +YVLLSN+YA  G+W +V +VR  M+   + KD G S+IE+
Sbjct: 789 EIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEI 848

Query: 514 NGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHS 570
            G V+RF    G    +K+I      +     + GY P T  VLH ++EE K + L  HS
Sbjct: 849 GGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHS 908

Query: 571 EKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGT 629
           EKLA++FGL+ T  GTT+++ K L IC DCH+ +K  SK+ +R+I++RD  RFH+FK+G 
Sbjct: 909 EKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGL 968

Query: 630 CSCRDYW 636
           C+C D+W
Sbjct: 969 CTCGDFW 975



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 201/426 (47%), Gaps = 44/426 (10%)

Query: 26  SNNITETHIISLIHSSNSTKQL---RQIHAQI-ILHNLFASSRITTQLISSASLHKSIDY 81
           S++I++  I  L+ +    K +   R++HA +   H L     ++T++I+  S   S   
Sbjct: 87  SSDISKEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSD 146

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA 140
           +  +FD    K+L ++N L+ G + N+ F+  IS F+ +L  + + P+  T P V+K+ A
Sbjct: 147 SRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACA 206

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN------ 194
            ++ + LG  +H L +K+G   DAFV   L  MY + G    A KVF+    +N      
Sbjct: 207 GVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNS 266

Query: 195 -----------------------KSESVLLWNV-----LINGCSKIGYLRKAVELFGMMP 226
                                    E  L+ +V     +I  C+ +G +R  + + G+  
Sbjct: 267 VMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAF 326

Query: 227 KKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
           K  +   V    SL+D + + G L +A  LF+    K VVSW  +I G+S+ G+      
Sbjct: 327 KLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFE 386

Query: 283 MFFQM-LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341
           +  +M  +  VR N+ TV++ L AC+    L +   +H Y   + F     +  A V  Y
Sbjct: 387 LLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAY 446

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           AKC +++ A  VF   + K + +W A+I   A +G   +++  F  MM SG +PD     
Sbjct: 447 AKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIG 506

Query: 402 AILTAC 407
           ++L AC
Sbjct: 507 SLLLAC 512



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 177/405 (43%), Gaps = 47/405 (11%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T  +++      +    L++IH     H       +    +++ +   S+D A  +F
Sbjct: 400 NEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVF 459

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                K +  +N LI   A+N      +  F+ M+   + P+R T   +  + A L  L 
Sbjct: 460 CGMEGKTVSSWNALIGAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLR 519

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H  ++++G+E D F+ + L  +Y+Q         +FD    K +++S++ WNV+I
Sbjct: 520 CGKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFD----KMENKSLVCWNVMI 575

Query: 207 NG-----------------------------------CSKIGYLR--KAVELFGMMPKKN 229
            G                                   CS++  LR  K V  F +    +
Sbjct: 576 TGFSQNELPCEALDTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLS 635

Query: 230 VASWVS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
             ++V+  LID + + G ++++  +F+++ EK    W  +I G+  +G   KA+ +F  M
Sbjct: 636 EDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELM 695

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCG 345
            + G R + FT +  L AC   G +  G++    +  N +G+K  +     +VDM  + G
Sbjct: 696 QNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQ-NLYGVKPKLEHYACVVDMLGRAG 754

Query: 346 NI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
            + EA  LV     E D   W++++     +G  E   +  KK++
Sbjct: 755 QLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIGEEVSKKLL 799



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 107/201 (53%), Gaps = 7/201 (3%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVG 310
           +F+   EK +  + A+++G+S+N     A+++F ++L A   A D FT+     ACA V 
Sbjct: 150 VFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVA 209

Query: 311 ALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            +E G  VH  ++    G   A +G AL+ MY KCG +E+A  VF   + ++L++W +++
Sbjct: 210 DVELGEAVH-ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVM 268

Query: 370 WGLAIHGRYEQAIQYFKKMMYS---GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           +  + +G + +    FK+++ S   G  PD    + ++ AC   G+V++ +     + F 
Sbjct: 269 YACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGM-VVHGLAFK 327

Query: 427 YFIEPSVKHHTVVVNLLSRVG 447
             I   V  +  +V++ S+ G
Sbjct: 328 LGITEEVTVNNSLVDMYSKCG 348



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 135/314 (42%), Gaps = 51/314 (16%)

Query: 147 LGRGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           +GR +H L+  S  +  D  +   +  MY   G    +  VFD   EK+    + L+N L
Sbjct: 110 VGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD----LFLYNAL 165

Query: 206 INGCSKIGYLRKAVELF-------GMMPKKNVASWVS----------------------- 235
           ++G S+    R A+ LF        + P       V+                       
Sbjct: 166 LSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAG 225

Query: 236 ----------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                     LI  + + G ++ A ++FE M  + +VSW +++   S+NG   +   +F 
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 286 QML---DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
           ++L   + G+  +  T+V+ + ACA VG +  G+ VH          +  +  +LVDMY+
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYS 345

Query: 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFL 401
           KCG +  A  +F     K++++W  +IWG +  G +    +  ++M        +    L
Sbjct: 346 KCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVL 405

Query: 402 AILTACWYSGQVKL 415
            +L AC  SG+ +L
Sbjct: 406 NVLPAC--SGEHQL 417



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 56/247 (22%), Positives = 109/247 (44%), Gaps = 18/247 (7%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP   I  T ++      ++ +  +++H+  +  +L   + +T  LI   +    ++ + 
Sbjct: 600 KP-QEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQ 658

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           +IFD    K+  ++NV+I G   + H    I  F  M     RP+  T+  V  +     
Sbjct: 659 NIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAG 718

Query: 144 LLS-----LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           L++     LG+  +   VK  +E+ A V     DM  + G+   A K+ +E P++  S  
Sbjct: 719 LVTEGLKYLGQMQNLYGVKPKLEHYACV----VDMLGRAGQLTEALKLVNEMPDEPDSG- 773

Query: 199 VLLWNVLINGCSKIGYLRKAVE----LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFE 254
             +W+ L++ C   G L    E    L  + P K   ++V L + +   G   +  ++ +
Sbjct: 774 --IWSSLLSSCRNYGDLEIGEEVSKKLLELEPNK-AENYVLLSNLYAGLGKWDEVRKVRQ 830

Query: 255 QMPEKGV 261
           +M E G+
Sbjct: 831 RMKENGL 837



 Score = 47.0 bits (110), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 12/121 (9%)

Query: 303 LSACAKVGALEAGVRVHNYISC-----NDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           L AC     +  G +VH  +S      ND      + T ++ MY+ CG+   +  VF   
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDV----VLSTRIIAMYSACGSPSDSRGVFDAA 154

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDGTVFLAILTACWYSGQVKL 415
           KEKDL  + A++ G + +  +  AI  F +++ S T+  PD      +  AC     V+L
Sbjct: 155 KEKDLFLYNALLSGYSRNALFRDAISLFLELL-SATDLAPDNFTLPCVAKACAGVADVEL 213

Query: 416 A 416
            
Sbjct: 214 G 214


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 205/669 (30%), Positives = 326/669 (48%), Gaps = 86/669 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IHA I +  L     +T  LI        ID+A  +F+     +   +N LI G    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS--LSLLSLGRGLHCLIVKSGVEYDAF 165
                 +   V MLR  +  N        K+  S   S +  G+ LH   VK G++ D  
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG-----YLRKAVE 220
           V   L D Y ++G    A K+F   P+ N    V+++N +I G  ++      +  +A+ 
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPN----VVMYNAMIAGFLQMETMADEFANEAMY 236

Query: 221 LF------GMMPKKNVASWV---------------------------------SLIDGFM 241
           LF      GM P +   S +                                 +L++ + 
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
             G ++   + F   P+  VVSWT++I G  QNG+ E  L +F ++L +G + ++FT+  
Sbjct: 297 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 356

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LSACA + A+++G ++H Y      G    I  + + MYAKCG+I++A++ F ETK  D
Sbjct: 357 MLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPD 416

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           +++W+ MI   A HG  ++A+  F+ M  SG  P+   FL +L AC + G V+  L +F+
Sbjct: 417 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 476

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ--------GYQNSQNSFTKLL--------- 464
            M+ D+ I P+VKH   +V+LL R G+ ++        G++     +  LL         
Sbjct: 477 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKAT 536

Query: 465 -----------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
                      +L+P+  +SYVLL NIY   G       +R LM+ R +KK+PG S+IEV
Sbjct: 537 DTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 596

Query: 514 NGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE---ALGC 568
              VH F AG   H  ++ I+ +LE+++   ++  Y+   E ++ +  E K +    +  
Sbjct: 597 GNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI--DEKLVSDASEPKHKDNSMVSY 654

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKD 627
           HSEKLA+ FG+I       ++++K L  C  CH  MK  S++  REI+LRD  RFH F+D
Sbjct: 655 HSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRD 714

Query: 628 GTCSCRDYW 636
           G+CSC DYW
Sbjct: 715 GSCSCGDYW 723



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 167/369 (45%), Gaps = 50/369 (13%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           +N+  +N LI G  +   +   ++ F       +R ++ T+            L LGR +
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 63

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H LI  SG+     +   L DMY + G+   A  VF+   E +     + WN LI G  +
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDS----VSWNSLIAGYVR 119

Query: 212 IGYLRKAVELFGMMPKK-----------------------------------------NV 230
           IG   + + L   M +                                          +V
Sbjct: 120 IGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDV 179

Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ-----NGEAEKALAMFF 285
               +L+D + + GDL+ A ++F+ MP+  VV + AMI GF Q     +  A +A+ +FF
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M   G++ ++FT  S L AC+ + A E G ++H  I   +      IG ALV++Y+  G
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSG 299

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           +IE     F  T + D+++WT++I G   +G++E  +  F ++++SG +PD      +L+
Sbjct: 300 SIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLS 359

Query: 406 ACWYSGQVK 414
           AC     VK
Sbjct: 360 ACANLAAVK 368



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 81/152 (53%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MP++ VVSW ++I+G++Q G   + + +F +   + +R + FT  +ALS C +   L  G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
             +H  I+ +  G    +  +L+DMY KCG I+ A LVF    E D ++W ++I G    
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           G  ++ ++   KM+  G   +     + L AC
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKAC 152



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/382 (20%), Positives = 156/382 (40%), Gaps = 52/382 (13%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           S+S +  + +H   +   L     + T L+ + +    ++ A  IF      N+ ++N +
Sbjct: 157 SSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAM 216

Query: 101 IRGLAE-----NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           I G  +     +      +  F  M    ++P+  T+  + K+ +++     G+ +H  I
Sbjct: 217 IAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQI 276

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------- 208
            K  ++ D F+   L ++Y   G      K F  TP+ +    V+ W  LI G       
Sbjct: 277 FKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLD----VVSWTSLIVGHVQNGQF 332

Query: 209 ----------------------------CSKIGYLRKAVELFGMMPKKNVASWV----SL 236
                                       C+ +  ++   ++     K  + ++     S 
Sbjct: 333 EGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQ 392

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I  + + GD+  A   F++     +VSW+ MI+  +Q+G A++A+ +F  M  +G+  N 
Sbjct: 393 ICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNH 452

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNI-EAASLV 353
            T +  L AC+  G +E G+R    +   D G+   +     +VD+  + G + EA S +
Sbjct: 453 ITFLGVLVACSHGGLVEEGLRYFEIMK-KDHGITPNVKHSACIVDLLGRAGRLAEAESFI 511

Query: 354 FGETKEKDLLTWTAMIWGLAIH 375
                E D + W +++    +H
Sbjct: 512 MDSGFEGDPVMWRSLLSACRVH 533



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KPS   T + I+    +  + +  +QIHAQI  +NL +   I   L+   SL  SI+  L
Sbjct: 247 KPSE-FTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGL 305

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             F H TPK ++  +  LI G  +N  F+  ++ F  +L    +P+  T   +  + A+L
Sbjct: 306 KCF-HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANL 364

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           + +  G  +H   +K+G+     ++     MY + G    A   F ET    K+  ++ W
Sbjct: 365 AAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET----KNPDIVSW 420

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPE 258
           +V+I+  ++ G  ++AV+LF +M    +A    +++ ++      G +++    FE M +
Sbjct: 421 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 480

Query: 259 K-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
                  V     +++   + G   +A +    ++D+G   +     S LSAC    A +
Sbjct: 481 DHGITPNVKHSACIVDLLGRAGRLAEAESF---IMDSGFEGDPVMWRSLLSACRVHKATD 537

Query: 314 AGVRV 318
            G RV
Sbjct: 538 TGKRV 542


>gi|413952609|gb|AFW85258.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952610|gb|AFW85259.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
 gi|413952611|gb|AFW85260.1| hypothetical protein ZEAMMB73_606432 [Zea mays]
          Length = 630

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 257/456 (56%), Gaps = 45/456 (9%)

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           LF +    +V    +L+D + + GD+  A ++F++MP + V +W A++ G +Q  E   A
Sbjct: 180 LFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLA 239

Query: 281 LAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           L +F      F+ L      N  TVV+ALSACA++G L+ G+ VH +           +G
Sbjct: 240 LLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVG 299

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
            AL+DMY+KCG++  A  VF   K +D  L+++ A I  L+IHG  E A++ F +M  + 
Sbjct: 300 NALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP-AR 358

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            EPD   +LA++  C ++G V      FDSMR    + P++KH+  +V+LL R G+ ++ 
Sbjct: 359 IEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGRLAEA 414

Query: 453 YQN----------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y                              ++ + TKL  L       YVLLSN+YA++
Sbjct: 415 YDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASK 474

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
            RW DV RVR  M+   +KK PG+SY E++G +H+F  G   H   +EI+  L++I +  
Sbjct: 475 SRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRI 534

Query: 543 REQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
              GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG TI+++K L  CGDCH
Sbjct: 535 CALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCH 594

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            + K  SK   R I++RD  RFH F+DG CSCRDYW
Sbjct: 595 VVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 630



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 142/358 (39%), Gaps = 61/358 (17%)

Query: 97  FNVLIRGLAENSH-----FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           FN  +RGLA + H                     R + L+  F  K+ A  S       L
Sbjct: 117 FNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQL 176

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--- 208
           H  + + GV  D  +   L D Y + G    A KVFDE P ++    V  WN L+ G   
Sbjct: 177 HATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRD----VATWNALLAGLAQ 232

Query: 209 --------------------------------------CSKIGYLRK--AVELFG--MMP 226
                                                 C+++G L+   AV  F   +  
Sbjct: 233 GTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGA 292

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFE--QMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
             NV    +LID + + G L +A E+F   ++ ++ +VS+ A I   S +G  E AL +F
Sbjct: 293 VDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLF 352

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M  A +  ++ T ++ +  C   G ++ G RV + +      +K   GT +VD+  + 
Sbjct: 353 DEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMRVPP-NMK-HYGT-IVDLLGRA 408

Query: 345 GNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           G + EA  ++       D++ W  ++    +HG  + A     K+   G+  DG   L
Sbjct: 409 GRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVL 466



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 126/321 (39%), Gaps = 47/321 (14%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA +    + A  R+ T L+ S +    +  A  +FD    +++  +N L+ GLA+ +
Sbjct: 175 QLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGT 234

Query: 109 HFQSCISHFVFM------LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
                +  F  +      L     PN +T      + A L  L  G  +H      G   
Sbjct: 235 EPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVD 294

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           +  V   L DMY + G    A +VF     K +  +++ +N  I   S  G+   A++LF
Sbjct: 295 NVCVGNALIDMYSKCGSLSRALEVFHSI--KLEDRTLVSYNATIQALSIHGHGEDALKLF 352

Query: 223 GMMPKK-----------------------------------NVASWVSLIDGFMRKGDLK 247
             MP +                                   N+  + +++D   R G L 
Sbjct: 353 DEMPARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDLLGRAGRLA 412

Query: 248 KAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSA 305
           +A ++   MP    +V W  ++     +G  + A     ++ D G   + D+ ++S + A
Sbjct: 413 EAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYA 472

Query: 306 CAKVGALEAGVRVHNYISCND 326
            +K   ++ G RV + +  ND
Sbjct: 473 -SKSRWVDVG-RVRDTMRSND 491


>gi|293334801|ref|NP_001169361.1| uncharacterized protein LOC100383228 [Zea mays]
 gi|224028917|gb|ACN33534.1| unknown [Zea mays]
          Length = 596

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 176/456 (38%), Positives = 257/456 (56%), Gaps = 45/456 (9%)

Query: 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
           LF +    +V    +L+D + + GD+  A ++F++MP + V +W A++ G +Q  E   A
Sbjct: 146 LFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGTEPNLA 205

Query: 281 LAMF------FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
           L +F      F+ L      N  TVV+ALSACA++G L+ G+ VH +           +G
Sbjct: 206 LLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVDNVCVG 265

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
            AL+DMY+KCG++  A  VF   K +D  L+++ A I  L+IHG  E A++ F +M  + 
Sbjct: 266 NALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLFDEMP-AR 324

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
            EPD   +LA++  C ++G V      FDSMR    + P++KH+  +V+LL R G+ ++ 
Sbjct: 325 IEPDEITYLAVMGGCNHAGLVDDGRRVFDSMR----VPPNMKHYGTIVDLLGRAGRLAEA 380

Query: 453 YQN----------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484
           Y                              ++ + TKL  L       YVLLSN+YA++
Sbjct: 381 YDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYASK 440

Query: 485 GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGA 542
            RW DV RVR  M+   +KK PG+SY E++G +H+F  G   H   +EI+  L++I +  
Sbjct: 441 SRWVDVGRVRDTMRSNDVKKVPGFSYTEIDGVMHKFINGDKEHMRWREIYRALDEIGSRI 500

Query: 543 REQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCH 601
              GY P T  VLH+I +EEK+ AL  HSEKLA+AFGLI T PG TI+++K L  CGDCH
Sbjct: 501 CALGYEPETSNVLHDIGEEEKQYALSYHSEKLAIAFGLISTPPGETIRVIKNLRTCGDCH 560

Query: 602 SLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            + K  SK   R I++RD  RFH F+DG CSCRDYW
Sbjct: 561 VVAKLISKAYNRVIIIRDRARFHRFEDGHCSCRDYW 596



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 142/358 (39%), Gaps = 61/358 (17%)

Query: 97  FNVLIRGLAENSH-----FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           FN  +RGLA + H                     R + L+  F  K+ A  S       L
Sbjct: 83  FNAALRGLAASPHPARSLLLLAGRLLPAPAPPRPRLDALSLSFALKATARCSDAFATLQL 142

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--- 208
           H  + + GV  D  +   L D Y + G    A KVFDE P ++    V  WN L+ G   
Sbjct: 143 HATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRD----VATWNALLAGLAQ 198

Query: 209 --------------------------------------CSKIGYLRK--AVELFG--MMP 226
                                                 C+++G L+   AV  F   +  
Sbjct: 199 GTEPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGA 258

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFE--QMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
             NV    +LID + + G L +A E+F   ++ ++ +VS+ A I   S +G  E AL +F
Sbjct: 259 VDNVCVGNALIDMYSKCGSLSRALEVFHSIKLEDRTLVSYNATIQALSIHGHGEDALKLF 318

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M  A +  ++ T ++ +  C   G ++ G RV + +      +K   GT +VD+  + 
Sbjct: 319 DEM-PARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMRVPP-NMK-HYGT-IVDLLGRA 374

Query: 345 GNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
           G + EA  ++       D++ W  ++    +HG  + A     K+   G+  DG   L
Sbjct: 375 GRLAEAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVL 432



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 69/321 (21%), Positives = 126/321 (39%), Gaps = 47/321 (14%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA +    + A  R+ T L+ S +    +  A  +FD    +++  +N L+ GLA+ +
Sbjct: 141 QLHATLFRLGVAADVRLMTTLLDSYAKCGDVASARKVFDEMPVRDVATWNALLAGLAQGT 200

Query: 109 HFQSCISHFVFM------LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
                +  F  +      L     PN +T      + A L  L  G  +H      G   
Sbjct: 201 EPNLALLLFRRLAGSFRELPPREEPNAVTVVAALSACAQLGTLKDGLAVHEFARTIGAVD 260

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           +  V   L DMY + G    A +VF     K +  +++ +N  I   S  G+   A++LF
Sbjct: 261 NVCVGNALIDMYSKCGSLSRALEVFHSI--KLEDRTLVSYNATIQALSIHGHGEDALKLF 318

Query: 223 GMMPKK-----------------------------------NVASWVSLIDGFMRKGDLK 247
             MP +                                   N+  + +++D   R G L 
Sbjct: 319 DEMPARIEPDEITYLAVMGGCNHAGLVDDGRRVFDSMRVPPNMKHYGTIVDLLGRAGRLA 378

Query: 248 KAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSA 305
           +A ++   MP    +V W  ++     +G  + A     ++ D G   + D+ ++S + A
Sbjct: 379 EAYDMIMSMPFPADIVLWQTLLGAAKMHGNVDLAELAATKLADLGSNVDGDYVLLSNVYA 438

Query: 306 CAKVGALEAGVRVHNYISCND 326
            +K   ++ G RV + +  ND
Sbjct: 439 -SKSRWVDVG-RVRDTMRSND 457


>gi|413937223|gb|AFW71774.1| hypothetical protein ZEAMMB73_242527 [Zea mays]
          Length = 625

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 172/472 (36%), Positives = 266/472 (56%), Gaps = 39/472 (8%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA--SWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           N L+     +G L  A  +F      ++   SW +++ G+ + GDL+ A E+F +MPE+G
Sbjct: 155 NCLLKLYCALGMLSDARRVFDTSGATSLDAFSWNTMVSGYGKCGDLEAAREVFVRMPERG 214

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW+AMI+   + GE  +AL MF QM+  G R +   + S L ACA +GALE G  VH 
Sbjct: 215 LVSWSAMIDACIRAGEFSEALRMFDQMMGNGFRPDAVVLSSVLKACAHLGALERGRWVHR 274

Query: 321 YISCNDFGLKG---AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           ++     G       + TALVDMY KCG ++ A  VF   + +D++ W AMI GLA++G 
Sbjct: 275 FLKAEGLGRSPDNVMLETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGH 334

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            ++A++ F++M+  G  P+ + F+ +L AC ++G+V      F SM  D+ IEP  +H+ 
Sbjct: 335 GKRALELFRRMLDMGFVPNESTFVVVLCACTHTGRVDEGKEIFRSM-CDHGIEPRREHYG 393

Query: 438 VVVNLLSRVG--QDSQG-----------------------YQN---SQNSFTKLLQLKPK 469
            + +LL R G  ++++                        + N    +    KL++L+P 
Sbjct: 394 CLADLLGRAGLLEEAEAVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPD 453

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKL 527
               YV+L N+YA  G W+D   +R +M+ R  KK+ G S+IE NG VH F +G   H  
Sbjct: 454 DGGRYVVLFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQ 513

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA--LGCHSEKLALAFGLIQTTPG 585
            ++I++ LED+    +  GY+  T  VL ++ +E+++   L  HSE+LALAFG++ T   
Sbjct: 514 TRQIYALLEDMEQRLQLIGYVKDTSQVLMDMDDEEDKGNTLSYHSERLALAFGILNTPRH 573

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             I+IVK L +C DCH   K  SK+ QREI++RD  RFH F+ G CSC D+W
Sbjct: 574 MPIRIVKNLRVCRDCHVYAKLVSKLYQREIIMRDRHRFHLFRGGVCSCNDFW 625



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 89/219 (40%), Gaps = 16/219 (7%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T L+        +D A  +FD    +++ ++N +I GLA N H +  +  F  ML + 
Sbjct: 290 LETALVDMYCKCGCMDEAWWVFDGVQSQDVVLWNAMIGGLAMNGHGKRALELFRRMLDMG 349

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
             PN  T+  V  +      +  G+ +   +   G+E        LAD+  + G    A 
Sbjct: 350 FVPNESTFVVVLCACTHTGRVDEGKEIFRSMCDHGIEPRREHYGCLADLLGRAGLLEEAE 409

Query: 185 KVFDETP-EKNKSESVLLWNVLINGC---SKIGYLRKAVELFGMMPKKNVASWVSLIDGF 240
            V  + P E + S+    W  L++ C   + +G   +  +    +   +   +V L + +
Sbjct: 410 AVLLDMPMEPHASQ----WGALMSSCLMHNNVGVGERVGKKLIELEPDDGGRYVVLFNLY 465

Query: 241 MRKGDLKKAGELFEQMPEKGV--------VSWTAMINGF 271
              G  + A  L + M E+G         + W  +++ F
Sbjct: 466 AVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEF 504


>gi|326509061|dbj|BAJ86923.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 866

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 182/592 (30%), Positives = 301/592 (50%), Gaps = 57/592 (9%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            L  +N ++ G A +   +  ++    ML   + P+  T   + KSVA+   L  G  +H
Sbjct: 284 TLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVH 343

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  ++ G+  DA+    L DMY + G+   A +VFD    +N    +  WN L+ G +  
Sbjct: 344 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRN----LATWNSLVAGHANA 399

Query: 213 GYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
           G+  +A+EL   M +     NV +W  LI G+   G   +A  L  Q+   GV    VSW
Sbjct: 400 GHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSW 459

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G    G+ + +   F +M   G++ +  T++  L ACA +  L  G  +H +   
Sbjct: 460 TSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALR 519

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +  +  + TAL+DMYAK G++ +A  VFG  + K+L+   AM+ GLA+HG+  +A   
Sbjct: 520 RAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAAL 579

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  SG +PDG  F A+LTAC   G V  A  + D M   Y + P+ +HH  +V+LL+
Sbjct: 580 FHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLA 639

Query: 445 RVGQDSQGYQNSQNSFTK---------------------------------LLQLKPKHP 471
           R     +GY +   +F +                                 L +L+P + 
Sbjct: 640 R-----RGYLDEAMTFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNS 694

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG----HKL 527
           ++Y+ + ++Y     + +   ++  M+ R +   PGWS+ +    +H FE  G    H  
Sbjct: 695 ANYLAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPE 754

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPG- 585
             EI+ ++  +++  R  GY+P T  + +++  EEKE  L CH+EKLA+ +GLI++    
Sbjct: 755 TPEIYDEMSRLVSQMRMVGYVPDTGCIAYDVPEEEKELLLLCHTEKLAVVYGLIRSDKSR 814

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             +++VK   +C DCH ++K+ S +  R+I+LRD +RFH+F DG CSC DYW
Sbjct: 815 APVRVVKNTRMCRDCHEVIKHVSALCGRQIILRDASRFHHFVDGKCSCDDYW 866



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 168/389 (43%), Gaps = 34/389 (8%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K+  ++N  +  LAE   +   I+ F  M    V  +         +         GR +
Sbjct: 141 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 200

Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           H   ++ G V+    V   LA MY +      A  V   T        V+ WN +I  C 
Sbjct: 201 HAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRT----AGAGVVAWNAVIACCV 256

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           ++G +  A+EL   M +    S                      +  E  + +W  +++G
Sbjct: 257 RLGLVDDALELAERMARDAETS----------------------EAAEPTLATWNTVLSG 294

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            +++G   +ALA+  +ML+ G+  +  TV S L + A  G+L  G  VH +   +     
Sbjct: 295 CARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPD 354

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              GTALVDMYAKCG ++ A  VF   + ++L TW +++ G A  G +++A++  + M  
Sbjct: 355 AYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKR 414

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
              +P+ T +  ++T    +G    A+     ++    + P+V   T +++     G   
Sbjct: 415 HRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIK-SAGVAPNVVSWTSLISGSCNGGD-- 471

Query: 451 QGYQNSQNSFTKLLQ--LKPKHPSSYVLL 477
             YQ+S   F+++ Q  ++P   +  VLL
Sbjct: 472 --YQDSFTFFSEMQQDGIQPSLVTMLVLL 498



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 18/268 (6%)

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K  V W   +   ++ G+ + A+A F +M   GV A+ +    AL AC + G    G  V
Sbjct: 141 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 200

Query: 319 HNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           H +      GL  A   +   L  MYA+  ++ AA+ V   T    ++ W A+I      
Sbjct: 201 HAHAL--RVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRL 258

Query: 376 GRYEQAIQYFKKMMYS-----GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G  + A++  ++M          EP    +  +L+ C   G+ + AL     M  +  I 
Sbjct: 259 GLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRM-LEQGIL 317

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
           P     TV   L S     S G+    + F     L P   +   L+ ++YA  GR    
Sbjct: 318 PDAA--TVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALV-DMYAKCGRLDIA 374

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
            RV   ++ R++     W+ + V GH +
Sbjct: 375 QRVFDGLEHRNLAT---WNSL-VAGHAN 398


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 214/649 (32%), Positives = 327/649 (50%), Gaps = 82/649 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNL------FASSRITTQLISSASLHKSIDYALSIFD 87
           +++ + SS S + LR +HA +I   L      F  SR+  +L +    H  + YALS+F 
Sbjct: 40  LLAAVDSSPSLRHLRHLHALLIRLPLPPRSLPFILSRLLRRLAALPPPHAPLPYALSVFA 99

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY-PF----VSKSVASL 142
             +P +  +   L+R         S    F  +LR + R   L + PF    ++KS A+ 
Sbjct: 100 ALSPPDPFLAAALLRFALLTQPPLSPFHLFSRILR-TARGGELPFLPFAFSPLAKSAAAA 158

Query: 143 SLLSLGRGLHCL-IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
             L   +  H +  +  G +   FV   L   Y+  G    A KVFDE            
Sbjct: 159 RSLPAAQAAHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFDE------------ 206

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                                  M  K+V  W S++  + R  D+  A E+F Q P K +
Sbjct: 207 -----------------------MVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDM 243

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           V+WTAM+ G++QN    KAL +F +M   G+  ++ ++  A+SACA++GA++    V   
Sbjct: 244 VAWTAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEI 303

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
              N FG+   +G+ LVDMYAKCG I+ A  VF   +EK++ T+++M+ GLA HGR  +A
Sbjct: 304 AEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREA 363

Query: 382 IQYFKKMMY-SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           I  FK M+  +   P+   F+ +LTAC ++G V     +F  M+  Y I PS  H+T +V
Sbjct: 364 IALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMV 423

Query: 441 NLLSRVGQDSQGY----------------------------QNSQNSFTKLLQLKPKHPS 472
           +LL R G   +                              + ++ +   L +L+P+   
Sbjct: 424 DLLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIG 483

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAG--GHKLAK 529
           +YVLLSN  AA G+W +V++VR +M+ R +KK P  S+ E  +G VH+F AG   H   +
Sbjct: 484 NYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTR 543

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           EI   L +++A  +  GY+P    +++++  EEKE  L  HSEKLAL FGL+      TI
Sbjct: 544 EIKKALLELVAKLKHAGYVPILSSIVYDVSNEEKERLLMGHSEKLALLFGLLTLGSRCTI 603

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +IVK L IC DCH  ++  S+    EI++RD  RFH+FKDG CSC  +W
Sbjct: 604 RIVKNLRICDDCHLFIRLVSRFEPVEIIVRDNMRFHHFKDGECSCGGFW 652


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 187/537 (34%), Positives = 281/537 (52%), Gaps = 81/537 (15%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPK 227
           Y + G    A KVF    +K  S     WN LI G ++ G  RKA+ L       G  P 
Sbjct: 395 YAKCGALNSAEKVFHGIGDKTVSS----WNALIGGHAQNGDPRKALHLLFQMTYSGQQPD 450

Query: 228 --------------------KNVASWV-------------SLIDGFMRKGDLKKAGELFE 254
                               K +  +V             SL+  ++  G    A  LF+
Sbjct: 451 WFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFD 510

Query: 255 QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314
           +M +K +VSW AMI+G+SQNG   ++LA+F + L  G+++++  +VS   AC+++ AL  
Sbjct: 511 RMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRL 570

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G   H Y+          +G +++DMYAK G I+ +  VF   K+K++ +W A+I    I
Sbjct: 571 GKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGI 630

Query: 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVK 434
           HG  ++AI+ +++M   G  PD   ++ IL AC ++G V+  L +F  M+    IEP ++
Sbjct: 631 HGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLE 690

Query: 435 HHTVVVNLLSRVGQDSQGYQ------------------NSQNSF----------TKLLQL 466
           H+  ++++L+R G+     +                   S  +F           KLL+L
Sbjct: 691 HYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLEL 750

Query: 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHK 526
           +P    +YVLLSN+YA  G+W  V RVR +M+   ++KD G S+IEV G V+ F  G   
Sbjct: 751 EPDKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSL 810

Query: 527 LAKE-----IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLI 580
             K      I  +LE+ ++   E GY P T  VLH + +EEK + L  HSEKLA++FGL+
Sbjct: 811 QPKSAEIRVIWRRLEERIS---EIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLL 867

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +TT GTT++I K L IC DCH+  K  SK  +REIV+RD  RFH+F+DG CSC DYW
Sbjct: 868 KTTKGTTLRIYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 177/399 (44%), Gaps = 45/399 (11%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IH  +I   L     +   L+       ++D A+ +FD     NL  +N +I   +EN  
Sbjct: 168 IHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGF 227

Query: 110 FQSCISHFVFML-RLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
            +      + ML    + P+ +T   +    A    + +G G+H L VK G+  +  V  
Sbjct: 228 SRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNN 287

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-- 226
            +  MY + G    A   F     KN +++V+ WN +I+  S  G + +A  L   M   
Sbjct: 288 AMVYMYSKCGYLNEAQMSF----VKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQ 343

Query: 227 ----KKNVASWVSLIDGFMRK----------------------------------GDLKK 248
               K N  + ++++   + K                                  G L  
Sbjct: 344 GEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNS 403

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F  + +K V SW A+I G +QNG+  KAL + FQM  +G + + FT+ S L ACA 
Sbjct: 404 AEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAH 463

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + +L+ G  +H Y+  N       +GT+L+  Y  CG   +A ++F   K+K+L++W AM
Sbjct: 464 LKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAM 523

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           I G + +G   +++  F+K +  G +      +++  AC
Sbjct: 524 ISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGAC 562



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 189/424 (44%), Gaps = 57/424 (13%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-L 123
           + T+LI   ++  S   +  +FD+   KNL  +N L+ G   N  +   +  F+ ++   
Sbjct: 81  LNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDT 140

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
             +P+  T+P V K+   +  + LG  +H +++K G+  D FV   L  MY + G    A
Sbjct: 141 DFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEA 200

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-------GMMPKKNVASWVSL 236
            KVFD  PE N    ++ WN +I   S+ G+ R + +L        G++P  +V + V++
Sbjct: 201 MKVFDFMPETN----LVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLP--DVVTVVTI 254

Query: 237 ---------------IDGFMRK--------------------GDLKKAGELFEQMPEKGV 261
                          I G   K                    G L +A   F +   K V
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVH 319
           VSW  MI+ FS  G+  +A  +  +M   G  ++AN+ T+++ L AC     L +   +H
Sbjct: 315 VSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELH 374

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
            Y   + F     +  A +  YAKCG + +A  VF    +K + +W A+I G A +G   
Sbjct: 375 GYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPR 433

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF-----DSMRFDYFIEPSVK 434
           +A+    +M YSG +PD     ++L AC +   ++           + +  D+F+  S+ 
Sbjct: 434 KALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLL 493

Query: 435 HHTV 438
            H +
Sbjct: 494 SHYI 497



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/311 (24%), Positives = 134/311 (43%), Gaps = 48/311 (15%)

Query: 148 GRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           GR LH  +  S     D  +   L  MY   G    +  VFD    KN    ++ WN L+
Sbjct: 62  GRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN----LIQWNALV 117

Query: 207 NGCSKIGYLRKAVELF------------------------------------GMMPKKNV 230
           +G ++ G     V++F                                    GM+ K  +
Sbjct: 118 SGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGL 177

Query: 231 ASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
              V    +L+  + + G + +A ++F+ MPE  +VSW +MI  FS+NG +  +  +  +
Sbjct: 178 VLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLME 237

Query: 287 ML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           ML + G+  +  TVV+ L  CA  G ++ G+ +H          +  +  A+V MY+KCG
Sbjct: 238 MLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCG 297

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE--PDGTVFLAI 403
            +  A + F +   K++++W  MI   ++ G   +A    ++M   G E   +    L +
Sbjct: 298 YLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNV 357

Query: 404 LTACWYSGQVK 414
           L AC    Q++
Sbjct: 358 LPACLDKLQLR 368



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 64/257 (24%), Positives = 118/257 (45%), Gaps = 15/257 (5%)

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVG 310
           +F+ M  K ++ W A+++G+++NG     + +F  ++ D   + ++FT  S + AC  + 
Sbjct: 101 VFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGIL 160

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            +  G  +H  +      L   +G ALV MY KCG ++ A  VF    E +L++W +MI 
Sbjct: 161 DVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMIC 220

Query: 371 GLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
             + +G    +     +M+   G  PD    + IL  C   G+V + +     +     +
Sbjct: 221 AFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIH-GLAVKLGL 279

Query: 430 EPSVKHHTVVVNLLSRVGQDSQGYQN-SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
              V  +  +V + S+      GY N +Q SF K      K+  S+  + + ++ EG   
Sbjct: 280 SEEVMVNNAMVYMYSKC-----GYLNEAQMSFVK---NNNKNVVSWNTMISAFSLEG--- 328

Query: 489 DVARVRTLMQRRSIKKD 505
           DV     L+Q   I+ +
Sbjct: 329 DVNEAFNLLQEMQIQGE 345



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 10/111 (9%)

Query: 303 LSACAKVGALEAGVRVHNYISC-----NDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           L AC     +E G R+H ++S      ND+     + T L+ MYA CG+   + LVF   
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDY----VLNTRLIKMYAMCGSPLDSRLVFDNM 105

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-SGTEPDGTVFLAILTAC 407
           + K+L+ W A++ G   +G Y   ++ F  ++  +  +PD   F +++ AC
Sbjct: 106 ETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC 156


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 188/592 (31%), Positives = 294/592 (49%), Gaps = 82/592 (13%)

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
            +L   + P    Y  +  + A    L+  R +H  + +S +  D F+   L  MY + G
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----------- 227
               A  VFD  P ++    V+ W  LI G ++        E  G++P            
Sbjct: 112 AVSDARHVFDGIPTRD----VVSWTYLITGYAQNDM---PAEALGLLPDMLRARFRPSGF 164

Query: 228 -------------------------------KNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                                          ++V    +L+D + R   +  A  +F+ +
Sbjct: 165 TFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWL 224

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
             K  VSW A+I GF++ G+ E  L  F +M   G  A  FT  S  SA A++GALE G 
Sbjct: 225 DSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGR 284

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
            VH ++  +   L   +   ++ MYAK G++  A  VF    ++DL+TW  M+   A +G
Sbjct: 285 WVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYG 344

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             ++A+ +F+++   G + +   FL++LTAC + G VK    +FD M+ DY +EP + H+
Sbjct: 345 LGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMMK-DYNVEPEIDHY 403

Query: 437 TVVVNLLSRVGQDSQG-------------------------YQNS---QNSFTKLLQLKP 468
              V+LL R G   +                          ++N+   Q +   + +L P
Sbjct: 404 VSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDP 463

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HK 526
           +     VLL NIYA+ G+W D ARVR +M+   +KK+P  S++E+   VH F A    H 
Sbjct: 464 EDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHP 523

Query: 527 LAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPG 585
            ++EI+   E++    ++ GY+P T++VL +IKE E+E  L  HSEK+ALAF LI    G
Sbjct: 524 KSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAG 583

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            TI+I+K + ICGDCHS  +Y S++ +REIV+RDT RFH+F +G+CSC DYW
Sbjct: 584 ATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 91/409 (22%), Positives = 168/409 (41%), Gaps = 59/409 (14%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           LT  +APT  +  S           II+    S +    R IH+ +    L     +   
Sbjct: 54  LTGELAPTPRVYHS-----------IITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNS 102

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI       ++  A  +FD    +++  +  LI G A+N      +     MLR   RP+
Sbjct: 103 LIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPS 162

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
             T+    K+  +     +G  +H L VK  ++ D +V   L DMY +  +   A +VFD
Sbjct: 163 GFTFTSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFD 222

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS---------------- 232
               KN+    + WN LI G ++ G     +  F  M +    +                
Sbjct: 223 WLDSKNE----VSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIG 278

Query: 233 ------WV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                 WV                 +++  + + G +  A ++F+++ ++ +V+W  M+ 
Sbjct: 279 ALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLT 338

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
            F+Q G  ++A+A F ++   G++ N  T +S L+AC+  G ++ G +  + +   D+ +
Sbjct: 339 AFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFDMM--KDYNV 396

Query: 330 KGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIH 375
           +  I    + VD+  + G + EA   VF    E     W A++    +H
Sbjct: 397 EPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMH 445



 Score = 42.7 bits (99), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 52/269 (19%), Positives = 109/269 (40%), Gaps = 20/269 (7%)

Query: 16  TTNIKSSHKPSNNITETH-----IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI 70
           TT +K +    N    TH     + S +    + +Q R +HA +I      ++ +   ++
Sbjct: 247 TTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTIL 306

Query: 71  SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130
              +   S+  A  +FD    ++L  +N ++   A+    +  ++HF  + +  ++ N++
Sbjct: 307 GMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQI 366

Query: 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190
           T+  V  + +   L+  G+    ++    VE +    V   D+  + G  + A     + 
Sbjct: 367 TFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKM 426

Query: 191 PEKNKSESVLLWNVLINGC-----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245
           P +    +  +W  L+  C     +KIG    A  +F + P ++    V L + +   G 
Sbjct: 427 PME---PTAAVWGALLGACRMHKNAKIGQY-AADHVFELDP-EDTGPPVLLYNIYASTGQ 481

Query: 246 LKKAGELFEQMPEKGV-----VSWTAMIN 269
              A  + + M   GV      SW  + N
Sbjct: 482 WDDAARVRKMMKATGVKKEPACSWVEIEN 510


>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
 gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/500 (34%), Positives = 278/500 (55%), Gaps = 37/500 (7%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           YV +     A   ++E  ++        +  L+  C+++  +R+  ++ G + K  + + 
Sbjct: 107 YVNVMSFEEALCFYNEMMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEAD 166

Query: 234 V----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML- 288
           V    SLI+ + R G+++ +  +FE++  K   SW++M++  +  G   + L +F  M  
Sbjct: 167 VFVQNSLINMYGRCGEMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCS 226

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
           +  ++A +  +VSAL ACA  GAL  G+ +H ++  N   L   + T+LVDMY KCG ++
Sbjct: 227 ETNLKAEESGMVSALLACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLD 286

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  +F + ++++ LT++AMI GLA+HG  E A++ F KM+  G EPD  V++++L AC 
Sbjct: 287 KALHIFQKMEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACS 346

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--------------------- 447
           +SG VK     F  M  +  +EP+ +H+  +V+LL R G                     
Sbjct: 347 HSGLVKEGRRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIW 406

Query: 448 -------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                  +  Q  +  Q +  +LL+L   +P  Y+L+SN+Y+    W DVAR RT +  +
Sbjct: 407 RTFLSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIK 466

Query: 501 SIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +K+ PG+S +E+ G  HRF  +   H   KEI+  L  +    + +GY P    +L N+
Sbjct: 467 GLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNV 526

Query: 559 -KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            +EEK+E L  HS+K+A+AFGL+ T PG+ IKI + L +C DCH+  K  S I +REIV+
Sbjct: 527 DEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVV 586

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH FK GTCSC+DYW
Sbjct: 587 RDRNRFHLFKGGTCSCKDYW 606


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 187/646 (28%), Positives = 331/646 (51%), Gaps = 80/646 (12%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T  ++I +   + + ++ +++H  I          I  +L+   +   S+  A  +FD  
Sbjct: 87  TYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEM 146

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
             ++L  +NV++ G AE                                   + LL   R
Sbjct: 147 PNRDLCSWNVMVNGYAE-----------------------------------VGLLEEAR 171

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA---FKVFDETPEKNKSESVLLWNVLI 206
            L         E D++    +   YV+  +   A   + +    P  N   ++   ++ +
Sbjct: 172 KL----FDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVP--NSRPNIFTVSIAV 225

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
              + +  +R+  E+ G + +  + S    W SL+D + + G + +A  +F+++ EK VV
Sbjct: 226 AAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVV 285

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322
           SWT+MI+ + ++    +  ++F +++ +  R N++T    L+ACA +   E G +VH Y+
Sbjct: 286 SWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYM 345

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
           +   F       ++LVDMY KCGNIE+A  V     + DL++WT++I G A +G+ ++A+
Sbjct: 346 TRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEAL 405

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442
           +YF  ++ SGT+PD   F+ +L+AC ++G V+  L FF S+   + +  +  H+T +V+L
Sbjct: 406 KYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDL 465

Query: 443 LSRVGQDSQ-------------------------GYQN---SQNSFTKLLQLKPKHPSSY 474
           L+R G+  Q                          Y N   ++ +  +L +++P++P +Y
Sbjct: 466 LARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTY 525

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIH 532
           V ++NIYAA G+W++  ++R  MQ   + K PG S+ E+    H F A    H +  +I 
Sbjct: 526 VTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIV 585

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
             L ++    +E+GY+P T  VLH++++E KEE L  HSEKLA+AF ++ T  GT IK+ 
Sbjct: 586 EFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVF 645

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L  C DCH  +K+ S I++R+I +RD TRFH F++G CSC DYW
Sbjct: 646 KNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 98/217 (45%), Gaps = 22/217 (10%)

Query: 216 RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG--VVSWTAMINGFSQ 273
           RK   L G + K+N++S+ + +  F  K       + F    E G  VV      N F  
Sbjct: 7   RKLTTLHGFILKRNLSSFHASLKRFSDK-------KFFNPNHEDGGVVVERLCRANRF-- 57

Query: 274 NGEA------EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
            GEA      +K L    Q+L    +    T  + +  C++  ALE G +VH +I  + F
Sbjct: 58  -GEAIDVLCGQKLLREAVQLLGRAKKPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGF 116

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                I   L+ MYAKCG++  A  VF E   +DL +W  M+ G A  G  E+A + F +
Sbjct: 117 VPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDE 176

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           M    TE D   + A++T      Q + AL  +  M+
Sbjct: 177 M----TEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQ 209


>gi|297738270|emb|CBI27471.3| unnamed protein product [Vitis vinifera]
          Length = 574

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 175/468 (37%), Positives = 261/468 (55%), Gaps = 53/468 (11%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
           L+  CS +  L +  ++   + K    S +    SL++ + + GD+K A  LF+Q+ ++ 
Sbjct: 124 LLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD 183

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
                             +AL +F +M  AG++ ++  +VS L ACA +G L+ G  +H 
Sbjct: 184 T-----------------EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHA 226

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI  ++  +   +G  L+DMYAKCG++E A  VF + +EK +  WTAMI G AIHGR  +
Sbjct: 227 YIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGRE 286

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+++F KM  +G EP+   F  ILTAC ++G V  A   F+SM   +  +PS++H+  +V
Sbjct: 287 ALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMV 346

Query: 441 NLLSRVGQDSQGYQNSQNSFTK----------------------------LLQLKPKHPS 472
           +LL R G   +  +  +N   K                            L+Q+ P H  
Sbjct: 347 DLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDPGHGG 406

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            Y+ L++I+AA G W   ARVR  M+ + + K PG S I VNG  H F AG   H   KE
Sbjct: 407 RYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHPQIKE 466

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTTIK 589
           I   LE I+   RE+GY P    +L +++++++E A+  HSEKLA+ FGLI T PG TI+
Sbjct: 467 IDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAVTFGLISTKPGMTIR 526

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +C DCH+++K  SK+  REI++RD TRFH FKDG C+C DYW
Sbjct: 527 IVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGDYW 574



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 194/404 (48%), Gaps = 42/404 (10%)

Query: 15  PTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLIS--S 72
           PT+ + S     +N  +T  + L+   ++ ++LRQIH Q++   L       ++L++  +
Sbjct: 8   PTSQLSSE----SNAAQT--LHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCA 61

Query: 73  ASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY 132
           +    S+ YA ++FD     N  ++N +IRG + +   +  +  +  ML  SV  N  T+
Sbjct: 62  SPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTF 121

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
           PF+ K+ +S+S L   + +H  I+K G   + +    L ++Y + G  + A  +FD+  +
Sbjct: 122 PFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQ 181

Query: 193 KN----------KSESVLLWNV----LINGCSKIGYLRKAVELFGMMPKKNVAS----WV 234
           ++          ++  + L NV     +  C+ +G L +   +   + K  +        
Sbjct: 182 RDTEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGC 241

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID + + GDL++A E+F +M EKGV  WTAMI+G++ +G   +AL  F +M  AGV  
Sbjct: 242 VLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEP 301

Query: 295 NDFTVVSALSACAKVGAL-------EAGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGN 346
           N  T    L+AC+  G +       E+  R+H +  S   +G        +VD+  + G 
Sbjct: 302 NQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYG-------CMVDLLGRAGL 354

Query: 347 I-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
           + EA  L+     + +   W A++    IHG  E   Q  K ++
Sbjct: 355 LKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILI 398



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 26/209 (12%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           L+  CS +  LR   ++ G M K  +      AS +         G L  A  +F+++  
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
                W  MI G+S + E E+AL ++  ML   V  N +T    L AC+ + ALE   ++
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H +I    FG +     +L+++Y+K G+I++A L+F +  ++D                 
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRD----------------- 183

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +A+  F +M  +G + D    ++ L AC
Sbjct: 184 TEALNLFHRMQTAGIKLDNVALVSTLQAC 212


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 205/669 (30%), Positives = 326/669 (48%), Gaps = 86/669 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IHA I +  L     +T  LI        ID+A  +F+     +   +N LI G    
Sbjct: 140 RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 199

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS--LSLLSLGRGLHCLIVKSGVEYDAF 165
                 +   V MLR  +  N        K+  S   S +  G+ LH   VK G++ D  
Sbjct: 200 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 259

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG-----YLRKAVE 220
           V   L D Y ++G    A K+F   P+ N    V+++N +I G  ++      +  +A+ 
Sbjct: 260 VGTALLDTYAKIGDLEDATKIFKLMPDPN----VVMYNAMIAGFLQMETMADEFANEAMY 315

Query: 221 LF------GMMPKKNVASWV---------------------------------SLIDGFM 241
           LF      GM P +   S +                                 +L++ + 
Sbjct: 316 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 375

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
             G ++   + F   P+  VVSWT++I G  QNG+ E  L +F ++L +G + ++FT+  
Sbjct: 376 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 435

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LSACA + A+++G ++H Y      G    I  + + MYAKCG+I++A++ F ETK  D
Sbjct: 436 MLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPD 495

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           +++W+ MI   A HG  ++A+  F+ M  SG  P+   FL +L AC + G V+  L +F+
Sbjct: 496 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 555

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ--------GYQNSQNSFTKLL--------- 464
            M+ D+ I P+VKH   +V+LL R G+ ++        G++     +  LL         
Sbjct: 556 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKAT 615

Query: 465 -----------QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
                      +L+P+  +SYVLL NIY   G       +R LM+ R +KK+PG S+IEV
Sbjct: 616 DTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEV 675

Query: 514 NGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE---ALGC 568
              VH F AG   H  ++ I+ +LE+++   ++  Y+   E ++ +  E K +    +  
Sbjct: 676 GNVVHSFVAGDRSHPNSQVIYVQLEEMLEEIKKLDYI--DEKLVSDASEPKHKDNSMVSY 733

Query: 569 HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKD 627
           HSEKLA+ FG+I       ++++K L  C  CH  MK  S++  REI+LRD  RFH F+D
Sbjct: 734 HSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRD 793

Query: 628 GTCSCRDYW 636
           G+CSC DYW
Sbjct: 794 GSCSCGDYW 802



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 172/381 (45%), Gaps = 50/381 (13%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           D A  +FD    +N+  +N LI G  +   +   ++ F       +R ++ T+       
Sbjct: 71  DVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVC 130

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
                L LGR +H LI  SG+     +   L DMY + G+   A  VF+   E +     
Sbjct: 131 GRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDS---- 186

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKK------------------------------- 228
           + WN LI G  +IG   + + L   M +                                
Sbjct: 187 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 246

Query: 229 ----------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ----- 273
                     +V    +L+D + + GDL+ A ++F+ MP+  VV + AMI GF Q     
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 306

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333
           +  A +A+ +FF+M   G++ ++FT  S L AC+ + A E G ++H  I   +      I
Sbjct: 307 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFI 366

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
           G ALV++Y+  G+IE     F  T + D+++WT++I G   +G++E  +  F ++++SG 
Sbjct: 367 GNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGR 426

Query: 394 EPDGTVFLAILTACWYSGQVK 414
           +PD      +L+AC     VK
Sbjct: 427 KPDEFTISIMLSACANLAAVK 447



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 139/306 (45%), Gaps = 50/306 (16%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+  H  ++K+  +   F+  +L  MY + G+T  A K+FD  P++N    V+ WN LI+
Sbjct: 38  GKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKLFDRMPKRN----VVSWNSLIS 93

Query: 208 GCSKIGYLRKAVELF-----------------------------------GMMPKKNVAS 232
           G +++G+  + + LF                                    ++    +  
Sbjct: 94  GYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGG 153

Query: 233 WV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
            V    SLID + + G +  A  +FE   E   VSW ++I G+ + G  ++ L +  +ML
Sbjct: 154 PVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKML 213

Query: 289 DAGVRANDFTVVSALSACAK--VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
             G+  N + + SAL AC      ++E G  +H         L   +GTAL+D YAK G+
Sbjct: 214 RHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGD 273

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGL----AIHGRY-EQAIQYFKKMMYSGTEPDGTVFL 401
           +E A+ +F    + +++ + AMI G      +   +  +A+  F +M   G +P    F 
Sbjct: 274 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFS 333

Query: 402 AILTAC 407
           +IL AC
Sbjct: 334 SILKAC 339



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 77/382 (20%), Positives = 156/382 (40%), Gaps = 52/382 (13%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           S+S +  + +H   +   L     + T L+ + +    ++ A  IF      N+ ++N +
Sbjct: 236 SSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAM 295

Query: 101 IRGLAE-----NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           I G  +     +      +  F  M    ++P+  T+  + K+ +++     G+ +H  I
Sbjct: 296 IAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQI 355

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING------- 208
            K  ++ D F+   L ++Y   G      K F  TP+ +    V+ W  LI G       
Sbjct: 356 FKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLD----VVSWTSLIVGHVQNGQF 411

Query: 209 ----------------------------CSKIGYLRKAVELFGMMPKKNVASWV----SL 236
                                       C+ +  ++   ++     K  + ++     S 
Sbjct: 412 EGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQ 471

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND 296
           I  + + GD+  A   F++     +VSW+ MI+  +Q+G A++A+ +F  M  +G+  N 
Sbjct: 472 ICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNH 531

Query: 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNI-EAASLV 353
            T +  L AC+  G +E G+R    +   D G+   +     +VD+  + G + EA S +
Sbjct: 532 ITFLGVLVACSHGGLVEEGLRYFEIMK-KDHGITPNVKHSACIVDLLGRAGRLAEAESFI 590

Query: 354 FGETKEKDLLTWTAMIWGLAIH 375
                E D + W +++    +H
Sbjct: 591 MDSGFEGDPVMWRSLLSACRVH 612



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 141/305 (46%), Gaps = 19/305 (6%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KPS   T + I+    +  + +  +QIHAQI  +NL +   I   L+   SL  SI+  L
Sbjct: 326 KPSE-FTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGL 384

Query: 84  SIFDHFTPK-NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
             F H TPK ++  +  LI G  +N  F+  ++ F  +L    +P+  T   +  + A+L
Sbjct: 385 KCF-HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANL 443

Query: 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
           + +  G  +H   +K+G+     ++     MY + G    A   F ET    K+  ++ W
Sbjct: 444 AAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKET----KNPDIVSW 499

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPE 258
           +V+I+  ++ G  ++AV+LF +M    +A    +++ ++      G +++    FE M +
Sbjct: 500 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 559

Query: 259 K-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
                  V     +++   + G   +A +    ++D+G   +     S LSAC    A +
Sbjct: 560 DHGITPNVKHSACIVDLLGRAGRLAEAESF---IMDSGFEGDPVMWRSLLSACRVHKATD 616

Query: 314 AGVRV 318
            G RV
Sbjct: 617 TGKRV 621


>gi|326532850|dbj|BAJ89270.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 580

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/442 (38%), Positives = 251/442 (56%), Gaps = 45/442 (10%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF------FQML 288
           +L+D + +  +L  A ++F++M  + V SW A++ G +Q  E   ALA+F      FQ L
Sbjct: 144 TLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGTEPSLALALFHRLVRSFQEL 203

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
                 N  T+++ALSACA++G+L+ G+ VH +      G    +  AL+DMY+KCG++ 
Sbjct: 204 PPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGGNVRVCNALIDMYSKCGSLA 263

Query: 349 AASLVFGETKEKD--LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            A  VF   K +D  L+++   I  +++HG    A++ F +M  +  EPD   ++A+L  
Sbjct: 264 RALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDEMP-TCIEPDEVTYIAVLCG 322

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN----------- 455
           C ++G V   L  F  MR    + P+VKH+  VV+LL R G+ ++ Y             
Sbjct: 323 CNHAGLVDEGLRVFHGMR----VPPNVKHYGTVVDLLGRAGRLAEAYDTIKSMPFPADIV 378

Query: 456 -----------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                            ++ + TKL +L       YVLLSN+YA++ RW DV RVR  M+
Sbjct: 379 LWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVYASKARWADVGRVRDTMR 438

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
              ++K PG+SY E++G +H+F  G   H   +EI+  L +IM+   E GY P T  VLH
Sbjct: 439 SNDVRKVPGFSYTEISGVMHKFINGDKEHPRLQEIYRALGEIMSRIGELGYEPETSNVLH 498

Query: 557 NI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           +I +EEK+ AL  HSEKLA+AFGLI T PG T++++K + ICGDCH + K  SK   R I
Sbjct: 499 DIGEEEKQYALSYHSEKLAIAFGLIATPPGETLRVIKNIRICGDCHVVAKLISKAYGRAI 558

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
           ++RD  RFH F+DG CSC DYW
Sbjct: 559 IIRDRARFHRFEDGQCSCSDYW 580



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 133/320 (41%), Gaps = 45/320 (14%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           Q+HA ++     A  R+ T L+ S +    +  A  +FD  T +++  +N L+ GLA+ +
Sbjct: 125 QLHALVLRLGCTADVRLITTLLDSYAKCDELASARKVFDEMTVRDVASWNALLAGLAQGT 184

Query: 109 HFQSCISHFVFMLR----LSVR--PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
                ++ F  ++R    L  R  PN +T      + A +  L  G  +H    K GV  
Sbjct: 185 EPSLALALFHRLVRSFQELPPREAPNVVTIIAALSACAQIGSLQDGLCVHEFARKIGVGG 244

Query: 163 DAFVRVHLADMYVQLGKTR---------------------------------GAFKVFDE 189
           +  V   L DMY + G                                     A K+FDE
Sbjct: 245 NVRVCNALIDMYSKCGSLARALEVFHSIKREDRTLVSYNTAIQAISMHGHGGDALKLFDE 304

Query: 190 TPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKKNVASWVSLIDGFMRKGDLKK 248
            P   + + V    VL  GC+  G + + + +F GM    NV  + +++D   R G L +
Sbjct: 305 MPTCIEPDEVTYIAVLC-GCNHAGLVDEGLRVFHGMRVPPNVKHYGTVVDLLGRAGRLAE 363

Query: 249 AGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSAC 306
           A +  + MP    +V W  ++     +G+ E A     ++ + G   + D+ ++S + A 
Sbjct: 364 AYDTIKSMPFPADIVLWQTLLGASKTHGDVELAEVAATKLTELGSNVDGDYVLLSNVYA- 422

Query: 307 AKVGALEAGVRVHNYISCND 326
           +K    + G RV + +  ND
Sbjct: 423 SKARWADVG-RVRDTMRSND 441


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 249/436 (57%), Gaps = 36/436 (8%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + +      A  LF++MP + VV+WT+++ G +++G  + AL ++  M+ +GV  
Sbjct: 82  ALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEP 141

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASL 352
           +++ V +ALS+CA    LE G  VH   +    GL+   ++G +LV MYAK G++  A  
Sbjct: 142 DEYVVAAALSSCAGSTTLELGQSVH--ATAVRLGLEPFLSVGNSLVSMYAKTGSLREARK 199

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF  T+ +  +TWTA+I G A +GR E+++Q + +M++SG  PD   F+ +L AC ++G 
Sbjct: 200 VFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGL 259

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL--------- 463
           V      F SM+ D+ I P   H+  +V++L R G+  +  +    S  KL         
Sbjct: 260 VDAGRAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALL 319

Query: 464 -------------------LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                               +L P     Y++LSN+Y+ E RW DVAR+RTLM+ R I K
Sbjct: 320 GACRTHRNAELAERAAEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAK 379

Query: 505 DPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN-IKEE 561
           +PG S++  +G  H F  E  GH    EI+ K+E++M   R +G++  T+W L +   E 
Sbjct: 380 EPGCSWVVASGVTHLFYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEG 439

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR 621
           +E+ L  HSE+LA+AFGL+    G  +++ K L +CGDCH  +K  +K+  REI+LRD+ 
Sbjct: 440 REKGLAHHSERLAVAFGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSN 499

Query: 622 -FHYFKDGTCSCRDYW 636
            FH+ +DG CSC DYW
Sbjct: 500 CFHHMRDGVCSCGDYW 515



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 111/254 (43%), Gaps = 47/254 (18%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------G 223
           L D Y +L +   A  +FDE P ++    V+ W  L+ G ++ G    A+ ++      G
Sbjct: 83  LVDAYAKLSRGGAARALFDEMPRRD----VVTWTSLLTGLARSGSHDAALRVYRDMVASG 138

Query: 224 MMPKKNVASWV---------------------------------SLIDGFMRKGDLKKAG 250
           + P + V +                                   SL+  + + G L++A 
Sbjct: 139 VEPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREAR 198

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           ++F+    +  V+WTA+I G++QNG  E++L ++ +M+ +G R +  T +  L AC+  G
Sbjct: 199 KVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAG 258

Query: 311 ALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTWTA 367
            ++AG R H      D G+         +VD+  + G + EA  L+   T + D   W A
Sbjct: 259 LVDAG-RAHFKSMQADHGITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKA 317

Query: 368 MIWGLAIHGRYEQA 381
           ++     H   E A
Sbjct: 318 LLGACRTHRNAELA 331



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 54/235 (22%), Positives = 102/235 (43%), Gaps = 18/235 (7%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A ++FD    +++  +  L+ GLA +    + +  +  M+   V P+         S A 
Sbjct: 96  ARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVASGVEPDEYVVAAALSSCAG 155

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            + L LG+ +H   V+ G+E    V   L  MY + G  R A KVFD T    +    + 
Sbjct: 156 STTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDAT----RLRCPVT 211

Query: 202 WNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQM- 256
           W  LI G ++ G   ++++++  M     + +  +++ L+      G +      F+ M 
Sbjct: 212 WTALIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQ 271

Query: 257 PEKGVVS----WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA-LSAC 306
            + G+      +  M++   + G  ++A+    ++LD      D TV  A L AC
Sbjct: 272 ADHGITPGPDHYACMVDVLGRAGRLDEAM----ELLDQSTMKLDATVWKALLGAC 322


>gi|242089043|ref|XP_002440354.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
 gi|241945639|gb|EES18784.1| hypothetical protein SORBIDRAFT_09g030130 [Sorghum bicolor]
          Length = 866

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 183/585 (31%), Positives = 303/585 (51%), Gaps = 45/585 (7%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +L  +N ++ G A N   +        ML   ++P+  +   + KSVASL LL+ G   H
Sbjct: 286 SLATWNAVLSGCARNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAH 345

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
              +++ +E D +      DMY + G    A KVFD    +N    +  WN L+ G +  
Sbjct: 346 GFFLRNQLEPDVYTGTAFVDMYAKCGHLEYAQKVFDTLELRN----ITTWNSLVAGYANA 401

Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSW 264
           G    A++L   M +     +V +W  LI+G+   G   +A  L  Q+   G    VVSW
Sbjct: 402 GQFDHALDLVEEMKRNRLDPDVTTWNGLINGYSVNGKSSQAVLLLRQIKAIGLTPNVVSW 461

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G   NG+ E +   F +M    V+ +  T+   L ACA +  L+ G  +H +   
Sbjct: 462 TSLISGSCNNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALR 521

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +     +GTAL+DMY+K GN+ +A  +F   +E +L++  AM+ GLA HG+  +AI  
Sbjct: 522 RAYDRDMVVGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIAL 581

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  SG +PD   F A+LTAC     V     +FD+M   Y + P+V+++  +V+LL+
Sbjct: 582 FHDMCNSGLKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLLA 641

Query: 445 RVG--QDSQGYQN--------------------------SQNSFTKLLQLKPKHPSSYVL 476
           R G   ++  + N                          ++ +  KL +L+P + ++Y+ 
Sbjct: 642 RCGYLDEAMDFINKSPFKSVSSLWGALLTGCTLHGNLALAEAAARKLFKLEPYNSANYLQ 701

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           + ++Y  E  + +   ++  M+ R++   PGWS+I++   +H FE  G  H    EI+ +
Sbjct: 702 MVSLYEHEQMFDEAESLKYAMKARALDTRPGWSWIQIEQSIHVFEVEGKPHPDTAEIYEE 761

Query: 535 LEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPG-TTIKIVK 592
           L  ++   R+ GY+P T  +++N+ +EEKE+ L  H+EKLA+ +GLI +      I+++K
Sbjct: 762 LIRLVFQIRKSGYVPDTSCIVYNVPEEEKEKLLLSHTEKLAITYGLIHSDASRVPIRVIK 821

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
              +C DCH L K+ S +  R+I+LRD  RFHYF DG CSC + W
Sbjct: 822 NTRMCNDCHELAKHISALCARQIILRDADRFHYFTDGKCSCNNCW 866



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 144/326 (44%), Gaps = 36/326 (11%)

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N  +  LAE   +   I+ F  M    V P+         +         G+ +H   
Sbjct: 150 LWNKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHA 209

Query: 156 VKSG-VEYDAFVRVHLADMYVQ---LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
            K+G V     V   LA MY +   +G  R   +  D  P        + WNV++  C++
Sbjct: 210 AKAGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPP--------VAWNVVVACCAR 261

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
           +G +  A++L   M                R G L+          E  + +W A+++G 
Sbjct: 262 LGLVDDALDLAERMA---------------RSGRLEL---------EPSLATWNAVLSGC 297

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           ++NG   +A  +   MLD G++ +  ++ S L + A +G L  G+  H +   N      
Sbjct: 298 ARNGRDREAFGVVRIMLDQGLQPDSSSMSSLLKSVASLGLLAHGMEAHGFFLRNQLEPDV 357

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
             GTA VDMYAKCG++E A  VF   + +++ TW +++ G A  G+++ A+   ++M  +
Sbjct: 358 YTGTAFVDMYAKCGHLEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRN 417

Query: 392 GTEPDGTVFLAILTACWYSGQVKLAL 417
             +PD T +  ++     +G+   A+
Sbjct: 418 RLDPDVTTWNGLINGYSVNGKSSQAV 443



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 148/324 (45%), Gaps = 22/324 (6%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT------- 131
           ++YA  +FD    +N+  +N L+ G A    F   +     M R  + P+  T       
Sbjct: 373 LEYAQKVFDTLELRNITTWNSLVAGYANAGQFDHALDLVEEMKRNRLDPDVTTWNGLING 432

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y    KS  ++ LL   + +       G+  +      L       G    +F  F+E  
Sbjct: 433 YSVNGKSSQAVLLLRQIKAI-------GLTPNVVSWTSLISGSCNNGDYEDSFYFFNEMQ 485

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLK 247
           + +   SV+  +VL+  C+ +  L+K  EL     +    +++    +LID + + G+L 
Sbjct: 486 KDHVQPSVVTMSVLLRACAGLALLKKGKELHCFALRRAYDRDMVVGTALIDMYSKSGNLA 545

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +FE++ E  +VS  AM+ G + +G+  +A+A+F  M ++G++ +  T  + L+AC 
Sbjct: 546 SAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIALFHDMCNSGLKPDSITFTALLTACR 605

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLLT- 364
            +  +  G    + +  + +G+   +     +VD+ A+CG ++ A     ++  K + + 
Sbjct: 606 SMDLVTEGWEYFDTME-SRYGVTPTVENYACMVDLLARCGYLDEAMDFINKSPFKSVSSL 664

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKM 388
           W A++ G  +HG    A    +K+
Sbjct: 665 WGALLTGCTLHGNLALAEAAARKL 688



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 106/245 (43%), Gaps = 9/245 (3%)

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           V W   +   ++  E   A+A F +M   GV  + +    AL AC + GA   G  VH +
Sbjct: 149 VLWNKRVAMLAEAEEWGDAIAAFGEMRARGVAPDGYACARALHACGRAGAPREGQAVHAH 208

Query: 322 IS-CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            +          +   L  MYA+  ++ AA  V  ET++   + W  ++   A  G  + 
Sbjct: 209 AAKAGHVAAHPLVPGFLAGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGLVDD 267

Query: 381 AIQYFKKMMYSGT---EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
           A+   ++M  SG    EP    + A+L+ C  +G+ + A      M  D  ++P     +
Sbjct: 268 ALDLAERMARSGRLELEPSLATWNAVLSGCARNGRDREAFGVVRIM-LDQGLQPDSSSMS 326

Query: 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
            ++  ++ +G  + G +   + F    QL+P   +    + ++YA  G  +   +V   +
Sbjct: 327 SLLKSVASLGLLAHGME--AHGFFLRNQLEPDVYTGTAFV-DMYAKCGHLEYAQKVFDTL 383

Query: 498 QRRSI 502
           + R+I
Sbjct: 384 ELRNI 388



 Score = 45.1 bits (105), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 9/178 (5%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           + T LI   S   ++  A  IF+     NL   N ++ GLA +      I+ F  M    
Sbjct: 530 VGTALIDMYSKSGNLASAQRIFERIQENNLVSSNAMLTGLAAHGQGHEAIALFHDMCNSG 589

Query: 125 VRPNRLTYPFVSKSVASLSLLSLG-RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
           ++P+ +T+  +  +  S+ L++ G      +  + GV         + D+  + G    A
Sbjct: 590 LKPDSITFTALLTACRSMDLVTEGWEYFDTMESRYGVTPTVENYACMVDLLARCGYLDEA 649

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYL----RKAVELFGMMPKKNVASWVSLI 237
               +++P K+ S    LW  L+ GC+  G L      A +LF + P  N A+++ ++
Sbjct: 650 MDFINKSPFKSVSS---LWGALLTGCTLHGNLALAEAAARKLFKLEP-YNSANYLQMV 703


>gi|326516644|dbj|BAJ92477.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518576|dbj|BAJ88317.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 867

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 182/592 (30%), Positives = 301/592 (50%), Gaps = 57/592 (9%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
            L  +N ++ G A +   +  ++    ML   + P+  T   + KSVA+   L  G  +H
Sbjct: 285 TLATWNTVLSGCARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVH 344

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  ++ G+  DA+    L DMY + G+   A +VFD    +N    +  WN L+ G +  
Sbjct: 345 CFFLRHGLSPDAYTGTALVDMYAKCGRLDIAQRVFDGLEHRN----LATWNSLVAGHANA 400

Query: 213 GYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSW 264
           G+  +A+EL   M +     NV +W  LI G+   G   +A  L  Q+   GV    VSW
Sbjct: 401 GHFDRALELVEAMKRHRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIKSAGVAPNVVSW 460

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           T++I+G    G+ + +   F +M   G++ +  T++  L ACA +  L  G  +H +   
Sbjct: 461 TSLISGSCNGGDYQDSFTFFSEMQQDGIQPSLVTMLVLLRACAGLALLTKGKELHCFALR 520

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
             +  +  + TAL+DMYAK G++ +A  VFG  + K+L+   AM+ GLA+HG+  +A   
Sbjct: 521 RAYDGEVVVSTALIDMYAKAGSLTSAKRVFGRVQGKNLVCCNAMLTGLAVHGQAHEAAAL 580

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F  M  SG +PDG  F A+LTAC   G V  A  + D M   Y + P+ +HH  +V+LL+
Sbjct: 581 FHDMWRSGLKPDGITFTALLTACRSMGLVTEAWEYLDDMEAKYGVAPTAEHHACMVDLLA 640

Query: 445 RVGQDSQGYQNSQNSFTK---------------------------------LLQLKPKHP 471
           R     +GY +   +F +                                 L +L+P + 
Sbjct: 641 R-----RGYLDEAMAFIERSPAEPGASSWGALLTGCAIHGNLDLAESAARHLFKLEPHNS 695

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG----HKL 527
           ++Y+ + ++Y     + +   ++  M+ R +   PGWS+ +    +H FE  G    H  
Sbjct: 696 ANYLAMMSLYEQHQMFDEAESLKYAMKARGVDARPGWSWTQAGRSIHVFEVDGGSSPHPE 755

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPG- 585
             EI+ ++  +++  R  GY+P T  + +++  EEKE  L CH+EKLA+ +GLI++    
Sbjct: 756 TPEIYDEMSRLVSQMRMVGYVPDTGCIAYDVPEEEKELLLLCHTEKLAVVYGLIRSDKSR 815

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             +++VK   +C DCH ++K+ S +  R+I+LRD +RFH+F DG CSC DYW
Sbjct: 816 APVRVVKNTRMCRDCHEVIKHVSALCGRQIILRDASRFHHFVDGKCSCDDYW 867



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 168/389 (43%), Gaps = 34/389 (8%)

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           K+  ++N  +  LAE   +   I+ F  M    V  +         +         GR +
Sbjct: 142 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 201

Query: 152 HCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           H   ++ G V+    V   LA MY +      A  V   T        V+ WN +I  C 
Sbjct: 202 HAHALRVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRT----AGAGVVAWNAVIACCV 257

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           ++G +  A+EL   M +    S                      +  E  + +W  +++G
Sbjct: 258 RLGLVDDALELAERMARDAETS----------------------EAAEPTLATWNTVLSG 295

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            +++G   +ALA+  +ML+ G+  +  TV S L + A  G+L  G  VH +   +     
Sbjct: 296 CARHGRDREALAVVRRMLEQGILPDAATVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPD 355

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
              GTALVDMYAKCG ++ A  VF   + ++L TW +++ G A  G +++A++  + M  
Sbjct: 356 AYTGTALVDMYAKCGRLDIAQRVFDGLEHRNLATWNSLVAGHANAGHFDRALELVEAMKR 415

Query: 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
              +P+ T +  ++T    +G    A+     ++    + P+V   T +++     G   
Sbjct: 416 HRIDPNVTTWNGLITGYAMNGLSSQAMLLLRQIK-SAGVAPNVVSWTSLISGSCNGGD-- 472

Query: 451 QGYQNSQNSFTKLLQ--LKPKHPSSYVLL 477
             YQ+S   F+++ Q  ++P   +  VLL
Sbjct: 473 --YQDSFTFFSEMQQDGIQPSLVTMLVLL 499



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 18/268 (6%)

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           K  V W   +   ++ G+ + A+A F +M   GV A+ +    AL AC + G    G  V
Sbjct: 142 KDAVLWNKQVAMLAEAGDWDGAIAAFREMRARGVAADGYACARALHACGRAGRRLEGRAV 201

Query: 319 HNYISCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
           H +      GL  A   +   L  MYA+  ++ AA+ V   T    ++ W A+I      
Sbjct: 202 HAHAL--RVGLVDAHPLVPGFLAGMYAEGADVAAATTVLLRTAGAGVVAWNAVIACCVRL 259

Query: 376 GRYEQAIQYFKKMMYS-----GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
           G  + A++  ++M          EP    +  +L+ C   G+ + AL     M  +  I 
Sbjct: 260 GLVDDALELAERMARDAETSEAAEPTLATWNTVLSGCARHGRDREALAVVRRM-LEQGIL 318

Query: 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
           P     TV   L S     S G+    + F     L P   +   L+ ++YA  GR    
Sbjct: 319 PDAA--TVSSLLKSVANSGSLGHGTEVHCFFLRHGLSPDAYTGTALV-DMYAKCGRLDIA 375

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
            RV   ++ R++     W+ + V GH +
Sbjct: 376 QRVFDGLEHRNLAT---WNSL-VAGHAN 399


>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
 gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
          Length = 673

 Score =  301 bits (772), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 189/639 (29%), Positives = 312/639 (48%), Gaps = 90/639 (14%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD+   +N+ ++  L+ G  +NS  +  +  F  ML     P+  T      + +S
Sbjct: 34  ARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPSNFTLSIALNACSS 93

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  ++LG+  H  I+K  + +D+ +   L  +Y + G    + K F ET EK+    V+ 
Sbjct: 94  LESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETGEKD----VIS 149

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV-------------ASWV-------------- 234
           W  +I+ C   G     + LF  M  +NV              S +              
Sbjct: 150 WTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLCSTIQSSDLGMQVHSLST 209

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-----------F 271
                       SL+  +++ G + +A  LF +M  K +++W AMI G           F
Sbjct: 210 KLGHESNLRITNSLVYLYLKCGCIDEAKNLFNRMEYKNLITWNAMIAGHAQAMDLAKDNF 269

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           S      +AL M+ ++  +G + + FT+ S L+ C+++ ALE G ++H     + F    
Sbjct: 270 SAQQTGTEALGMYLKLNRSGRKPDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDV 329

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391
            +GTALVDMY KCG+IE A   F +   + L++WT+MI   A HG+ + A+Q F+ M  +
Sbjct: 330 VVGTALVDMYDKCGSIERARKAFLDMSTRTLISWTSMITSFARHGQSQHALQLFEDMRLA 389

Query: 392 GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451
           G  P+   F+ +L AC ++G V  AL +F+ M+ +Y I+P + H+  +V++  R+G+  +
Sbjct: 390 GFRPNQITFVGVLAACSHAGMVDEALEYFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDE 449

Query: 452 GYQ-------------------------NSQNSF---TKLLQLKPKHPSSYVLLSNIYAA 483
            +                          N +  F    +LL+LKP+   +YV+L N+Y +
Sbjct: 450 AFDVIKRMDVEPNEFIWLLLIAGCRNHGNEELGFYAAEQLLKLKPRSTETYVVLLNMYIS 509

Query: 484 EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAG 541
             RW+DV+ VR LM+   + K   WS I + G VH F+     H    E+H+ L D++  
Sbjct: 510 AERWEDVSMVRRLMKEEKVGKLKDWSRISIKGEVHSFKTNNRLHNHNAELHTLLNDLVDR 569

Query: 542 AREQGY--MPGTEWVLHNIKEEKEEALGC---HSEKLALAFGLIQTTPGTTIKIVKKLTI 596
           A+  GY  +   E +    +E +E+A      HSEKLA+ FGL+ T  G  I+++K +T+
Sbjct: 570 AKSLGYEQLENMEVIDDEEEEAEEKAFSSAVYHSEKLAVTFGLLNTPIGAPIRVIKSVTM 629

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           C DCH  MK  S  + R I+++D  R H F +G CSC D
Sbjct: 630 CKDCHDFMKVVSSQTTRHIIIKDGKRLHKFVNGQCSCAD 668



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 101/172 (58%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L++ + + G +  A ++F+ +P + VV WT ++ G+ QN + E A+ +F  ML++G   +
Sbjct: 21  LVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPS 80

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
           +FT+  AL+AC+ + ++  G + H +I         +IG AL  +Y+K G+++++   F 
Sbjct: 81  NFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFR 140

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ET EKD+++WT +I     +GR    ++ F +M++   EP+     ++L+ C
Sbjct: 141 ETGEKDVISWTTIISACGDNGRAGMGLRLFIEMLFENVEPNDFTLTSVLSLC 192



 Score = 48.9 bits (115), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 5/107 (4%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LV++YAKCG +  A  VF     ++++ WT ++ G   + + E A++ F  M+ SG+ P 
Sbjct: 21  LVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMTGYVQNSQPEVAVEVFGDMLESGSFPS 80

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
                  L AC     + L   F       + I+  + H + + N L
Sbjct: 81  NFTLSIALNACSSLESITLGKQF-----HAFIIKYRISHDSSIGNAL 122


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  301 bits (771), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 203/702 (28%), Positives = 337/702 (48%), Gaps = 77/702 (10%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           NR   A      +  S    + +T   +++  +     K+L Q HAQI+      + R+ 
Sbjct: 119 NRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVC 178

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             L+ S      +D A  +F      +   FNV+I G A N   +  I  FV M  L  +
Sbjct: 179 NTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFK 238

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P+  T+  V  +   L   + G+ +H  +VK+    + FV     D Y +        K+
Sbjct: 239 PSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKL 298

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-----PKKN------------ 229
           F+E PE +     + +NV+I   + +G ++++++LF  +      +KN            
Sbjct: 299 FNEMPELDG----VSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAAS 354

Query: 230 --------------VASWV--------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
                         V S          SL+D + + G  ++A  +F ++  +  V WTAM
Sbjct: 355 SLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAM 414

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I+   Q G  E  L +F++M  A V A+  T    L A A + ++  G ++H+ +  + F
Sbjct: 415 ISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCVIRSGF 474

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
            +    G AL+DMYA C +I+ A   F E  E++++TW A++   A +G  +  ++ F++
Sbjct: 475 -MNVYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEE 533

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M+ SG +PD   FL ILTAC +   V+  L +F+ M   Y + P  +H+T +V+ L R G
Sbjct: 534 MIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSG 593

Query: 448 QDSQG----------------------------YQNSQNSFTKLLQLKP-KHPSSYVLLS 478
           +  +                             Y  ++ +  +L  +K  +  + YV +S
Sbjct: 594 RFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMS 653

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAK--EIHSKLE 536
           NI+A  G+W  V +V+  M+ R ++K P +S++E+   VH F A   K  +  EI  K+E
Sbjct: 654 NIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQLEILRKIE 713

Query: 537 DIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595
            +     ++GY P       N+ KE K ++L  HSE+LA+AF LI T  G+ I ++K L 
Sbjct: 714 MLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPILVMKNLR 773

Query: 596 ICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            C DCH+ +K  SKI  REI +RD+ RFH+F+DG+CSC DYW
Sbjct: 774 ACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 105/205 (51%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +N +I   S+ G L +A +L   MP +N  S   +I G+++ G+L  A  +F+   E+ V
Sbjct: 46  FNFMIKDLSERGQLCQARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTV 105

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           V+WT MI  +S++     A  +F +M  +G + +  T ++ L+ C  +   +   + H  
Sbjct: 106 VAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQ 165

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I      L   +   L+D Y K G +++A  +F E    D +++  MI G A +G  E+A
Sbjct: 166 IVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEA 225

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTA 406
           I+ F +M   G +P    F A+++A
Sbjct: 226 IELFVEMQNLGFKPSDFTFAAVISA 250



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 157/367 (42%), Gaps = 36/367 (9%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           QL+ +H         ASSR T Q    A + K+       FD  T +    FN +I+ L+
Sbjct: 13  QLKTLHG--------ASSRQTLQTCIDARIVKTG------FDPITSR----FNFMIKDLS 54

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPF---VSKSVASLSLLSLGRGLHCLIVKSGVEY 162
           E    Q C +  +    L   PNR ++     +S  V S +L    R     I     E 
Sbjct: 55  ERG--QLCQARQL----LDQMPNRNSFSIDIIISGYVKSGNLTVARR-----IFDDTDER 103

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
                  +   Y +  +   AFK+F E          + +  L+ GC+ +   ++  +  
Sbjct: 104 TVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAH 163

Query: 223 GMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
             + K     N     +L+D + + G L  A  LF +M     VS+  MI G++ NG  E
Sbjct: 164 AQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNE 223

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +A+ +F +M + G + +DFT  + +SA   +     G ++H ++    F     +G A +
Sbjct: 224 EAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFL 283

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           D Y+K   +     +F E  E D +++  +I   A  G+ +++I  F+++ ++  +    
Sbjct: 284 DFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNF 343

Query: 399 VFLAILT 405
            F  +L+
Sbjct: 344 PFPTMLS 350


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 203/666 (30%), Positives = 340/666 (51%), Gaps = 82/666 (12%)

Query: 48   RQIHAQIILHNLFA-SSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            R++H  I+   L      ++  L++  +   +ID A  +F     ++   +N +I  L +
Sbjct: 394  REVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQ 453

Query: 107  NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
            N   +  + ++  M +  + P+         S ASL LL+ G+ +HC  VK G++ D  V
Sbjct: 454  NGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSV 513

Query: 167  RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN-GCSKIGYLRKAVELF--- 222
               L  MY   G    ++++F+   E +    ++ WN ++    S      ++VE+F   
Sbjct: 514  SNALVKMYGDCGARSESWEIFNSMAEHD----IVSWNSIMGVMVSSHAPTAESVEVFSNM 569

Query: 223  ---GMMPKK----NVASWVS-----------------------------LIDGFMRKGDL 246
               G+ P K    N+ S +S                             L+  + + GD+
Sbjct: 570  MRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDM 629

Query: 247  KKAGELFEQMP-EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
                +LF  M   +  VSW +MI+G+  NG  ++ +   + M+ +    +  T    L+A
Sbjct: 630  DSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNA 689

Query: 306  CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            CA V ALE G+ +H +   +       + +AL+DMY+KCG I+ AS VF    +K+  +W
Sbjct: 690  CASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSW 749

Query: 366  TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +MI G A HG  E+A++ F++M  +G  PD   F+++L+AC ++G V   L++F+ M  
Sbjct: 750  NSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFEMME- 808

Query: 426  DYFIEPSVKHHTVVVNLLSRVGQ-------------------------------DSQGYQ 454
            D+ I P ++H++ V++LL R G+                               D     
Sbjct: 809  DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRID 868

Query: 455  NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
              + +   LL+L+P++P +YVL SN YAA GRW+D A+ R  M   ++KK+ G S++ + 
Sbjct: 869  LGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLG 928

Query: 515  GHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSE 571
              VH F AG   H   KEI+ KL  ++   +  GY+P TE+ L++++EE +E L   HSE
Sbjct: 929  DGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSE 988

Query: 572  KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
            KLA+AF L +++    I+I+K L +CGDCH+  +Y S+I  R+I+LRD+ RFH+F+DG C
Sbjct: 989  KLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKC 1048

Query: 631  SCRDYW 636
            SC DYW
Sbjct: 1049 SCGDYW 1054



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 171/414 (41%), Gaps = 65/414 (15%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALS---IFDHFTPKNLHIFNVLIRGLA 105
           Q+H  ++   ++AS+      + S   + S+   L    +FD    ++L  +N L+   A
Sbjct: 183 QVHG-LVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYA 241

Query: 106 ENSHFQSCISHFVFMLR----LSVRPNRLTYPFVSKSVASLSLLSLGRGL----HCLIVK 157
           +  +  S  + F+ ML     + +RPN  T+      + + SL S   G+       ++K
Sbjct: 242 KKGYVVSTFTLFMAMLHDDSAIELRPNEHTF---GSLITATSLSSCSSGVLDQVFARVLK 298

Query: 158 SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
           SG   D +V   L   + + G    A  +F    E+N     +  N LI G  K     +
Sbjct: 299 SGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERN----AVTLNGLIVGLVKQHCSEE 354

Query: 218 AVELF-----------------------------GMMPKKNVASWV-------------- 234
           AV +F                             G+M  + V   +              
Sbjct: 355 AVGIFMGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSN 414

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            L++ + + G + KA  +F  +  +  VSW  +I+   QNG  E A+  +  M    +  
Sbjct: 415 GLVNMYAKCGAIDKASRVFRLLCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISP 474

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           ++F  +S LS+CA +  L AG +VH         L  ++  ALV MY  CG    +  +F
Sbjct: 475 SNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIF 534

Query: 355 GETKEKDLLTWTAMIWGLAI--HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
               E D+++W + I G+ +  H    ++++ F  MM SG  P+   F+ +L+A
Sbjct: 535 NSMAEHDIVSWNS-IMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSA 587



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 117/251 (46%), Gaps = 9/251 (3%)

Query: 17  TNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH 76
           +N+  S    N +T  +++S +   +  +  +Q+HA ++ H     + +   L+S  +  
Sbjct: 567 SNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKS 626

Query: 77  KSIDYALSIFDHFTPKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
             +D    +F   + +   + +N +I G   N H Q  +     M+  +   +  T+  V
Sbjct: 627 GDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIV 686

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
             + AS++ L  G  +H   ++S +E D  V   L DMY + G+   A KVF+   +KN+
Sbjct: 687 LNACASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNE 746

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
                 WN +I+G ++ G   KA+E+F  M +        ++VS++      G + +  +
Sbjct: 747 ----FSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLD 802

Query: 252 LFEQMPEKGVV 262
            FE M + G++
Sbjct: 803 YFEMMEDHGIL 813



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 162/410 (39%), Gaps = 67/410 (16%)

Query: 55  ILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114
           + H+LF S+ +       + L      A  +FD    +N   +  L+ G   +       
Sbjct: 87  LTHDLFLSNHLVNLYAKGSRLAA----ARQVFDGMLERNAVSWTCLVSGYVLSGITDEAF 142

Query: 115 SHFVFMLRLSVRPNRLTYPFVSKSV------ASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
             F  ML      +R T PF   SV      A   LL+    +H L+ K+    +  V  
Sbjct: 143 RVFKAMLWEGSEFSRPT-PFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCN 201

Query: 169 HLADMY--VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
            L  MY    +G    A +VFD TP ++    ++ WN L++  +K GY+     LF  M 
Sbjct: 202 ALISMYGNCSVGLPLQAQQVFDTTPVRD----LITWNALMSVYAKKGYVVSTFTLFMAML 257

Query: 227 KKNVASWV--------------------------------------------SLIDGFMR 242
             + A  +                                            +L+  F R
Sbjct: 258 HDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFAR 317

Query: 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302
            G L +A ++F  + E+  V+   +I G  +   +E+A+ +F    D+ V   D T V  
Sbjct: 318 HGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTD-TFVVL 376

Query: 303 LSACAKVGALEAGV----RVHNYI-SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           LSA A+    E G+     VH +I       LK A+   LV+MYAKCG I+ AS VF   
Sbjct: 377 LSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLL 436

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             +D ++W  +I  L  +G  E A+  +  M      P     ++ L++C
Sbjct: 437 CARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSC 486



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/290 (22%), Positives = 124/290 (42%), Gaps = 63/290 (21%)

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING-- 208
           LH  +VK G+ +D F+  HL ++Y +  +   A +VFD   E+N     + W  L++G  
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERN----AVSWTCLVSGYV 133

Query: 209 ------------------------------------CSKIG--YLRKAVELFGMMPKKNV 230
                                               C   G   L  AV++ G++ K   
Sbjct: 134 LSGITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIY 193

Query: 231 ASWVSLIDGFMRK------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           AS  ++ +  +        G   +A ++F+  P + +++W A+++ +++ G       +F
Sbjct: 194 ASNTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLF 253

Query: 285 FQML--DAGV--RANDFT-----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
             ML  D+ +  R N+ T       ++LS+C+     +   RV    S +D      +G+
Sbjct: 254 MAMLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDL----YVGS 309

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
           ALV  +A+ G ++ A  +F   KE++ +T   +I GL      E+A+  F
Sbjct: 310 ALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF 359



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 3/84 (3%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-- 394
           LV++YAK   + AA  VF    E++ ++WT ++ G  + G  ++A + FK M++ G+E  
Sbjct: 97  LVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAMLWEGSEFS 156

Query: 395 -PDGTVFLAILTACWYSGQVKLAL 417
            P    F ++L AC  +G   LA 
Sbjct: 157 RPTPFTFGSVLRACQDAGPDLLAF 180


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 197/615 (32%), Positives = 300/615 (48%), Gaps = 87/615 (14%)

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           LI+ L    + +  +     +L     P + T+  +  S    + LS G  +H  +V SG
Sbjct: 49  LIQSLCRGGNLKQAVQ----LLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSG 104

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           ++ D ++   L +MY  LG    A KVFDET EK    ++ +WN +    +        +
Sbjct: 105 LDQDPYLATKLINMYCDLGSVDHACKVFDETREK----TIFVWNAIFRALAMASRGEDLL 160

Query: 220 ELFGMMP---------------KKNVASWVS----------------------------L 236
            L+G M                K  V S +S                            L
Sbjct: 161 VLYGQMNWIGIPSNRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYEGHVHVMTTL 220

Query: 237 IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF-FQMLDA-GVRA 294
           +D + R G +  A  +F  MP+K +VSW+AMI  +++N    KAL +F   ML+A     
Sbjct: 221 LDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVP 280

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           N  T+VS L ACA + ALE G  VH Y+          +   L+ MY +CG I     VF
Sbjct: 281 NPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVF 340

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
              K++D+++W ++I    +HG  ++AIQ F+ M+  G  P    F+ +L AC ++G V+
Sbjct: 341 DYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVE 400

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------------ 462
            A   F+SM   Y I P ++H+  +V++L R  +  +  +  QN   K            
Sbjct: 401 EAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGS 460

Query: 463 ----------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                           L +L+PK+  +YVLLS+IYA    W DV RVR  ++ R ++K P
Sbjct: 461 CRIHCNVELAERASAMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIP 520

Query: 507 GWSYIEVNGHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE 564
             S+IEV   ++   +    +   +E+ + L  ++   + QGY+P T  V +++ EE++E
Sbjct: 521 SCSWIEVKRKIYSLVSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKE 580

Query: 565 --ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
              LG HS KLA+AFGLI T+ G  I+I   L +C DCH+ MK+ SK + REI+LRD  R
Sbjct: 581 RIVLG-HSGKLAVAFGLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNR 639

Query: 622 FHYFKDGTCSCRDYW 636
           FH FKDG CSC DYW
Sbjct: 640 FHCFKDGVCSCGDYW 654


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  301 bits (771), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 165/450 (36%), Positives = 253/450 (56%), Gaps = 35/450 (7%)

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
           VE  G+  +  V +  SL++ + R   L  A  +FE++P K  ++W A++  ++Q+G  +
Sbjct: 2   VEKVGLEAETVVGT--SLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGK 59

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +AL +F +M   GV+    T +S L ACA   AL  G  +H  +  N    +  + TALV
Sbjct: 60  EALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALV 119

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           +MYAKCG +  A  VF + +  D++ WTA++ G A HG  E++    ++M   G +P+  
Sbjct: 120 NMYAKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNV 179

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DS 450
            FL+++ AC +SG +  A + F +M  D+   P  +H   V++LL R G+        D+
Sbjct: 180 TFLSLVFACSHSGYLDEARDCFIAMA-DHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDT 238

Query: 451 QGYQNSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDV 490
             ++    ++  +L                    +++P  PS+Y+L+SN+YAA  RW DV
Sbjct: 239 MPFEPGLTAWLTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDV 298

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYM 548
            +VR LM+RR +KK+PG S IEV   +H F A    H     I+ +L  +    +E GY+
Sbjct: 299 KKVRRLMERRGVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYV 358

Query: 549 PGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYA 607
           P T  VLHN+ EE ++A L  HSE+LA+ +GLI T PGT++ +V  L +C DCH+  KY 
Sbjct: 359 PDTSLVLHNVDEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYI 418

Query: 608 SKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           S IS REIV+RD  RFH F  G CSC+DYW
Sbjct: 419 STISNREIVVRDANRFHTFATGGCSCKDYW 448



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/257 (24%), Positives = 122/257 (47%), Gaps = 17/257 (6%)

Query: 59  LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFV 118
           L A + + T L++      S+  A  +F+    K+   +N ++   A++ + +  +  F 
Sbjct: 7   LEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQ 66

Query: 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178
            M +  V+    T+  V ++ AS S L+LGR +H  +V +G++ +  V   L +MY + G
Sbjct: 67  RMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCG 126

Query: 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWV 234
           K   A +VFD+     +   V+ W  ++ G ++ G++ ++ +L   M     K N  +++
Sbjct: 127 KLVEAREVFDQM----EGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFL 182

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQM-LD 289
           SL+      G L +A + F  M + G       +  +I+   + G  E+A  +   M  +
Sbjct: 183 SLVFACSHSGYLDEARDCFIAMADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFE 242

Query: 290 AGVRANDFTVVSALSAC 306
            G+ A     ++ LSAC
Sbjct: 243 PGLTA----WLTMLSAC 255


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 193/584 (33%), Positives = 294/584 (50%), Gaps = 78/584 (13%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
           L+  P RL +  ++ + A    L   R +H  +  S      F+   L  +Y + G    
Sbjct: 60  LAATP-RLYHSLIT-ACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVAD 117

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMPKK------------- 228
           A +VFD  P ++       W  LI G ++     +A+ L  GM+  +             
Sbjct: 118 ARRVFDGMPARDMCS----WTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLK 173

Query: 229 -------------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS 263
                                    +V    +L+D + R G +  A  +F+Q+  K  VS
Sbjct: 174 AAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS 233

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W A+I GF++ G+ E  L MF +M   G  A  FT  S  SA A +GALE G  VH ++ 
Sbjct: 234 WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMI 293

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQ 383
            +   L   +G  ++DMYAK G++  A  VF    +KD++TW +M+   A +G   +A+ 
Sbjct: 294 KSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVT 353

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443
           +F++M   G   +   FL+ILTAC + G VK    +FD M+ +Y +EP + H+  VV+LL
Sbjct: 354 HFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMK-EYNLEPEIDHYVTVVDLL 412

Query: 444 SRVG-------------------------QDSQGYQNS---QNSFTKLLQLKPKHPSSYV 475
            R G                            + ++N+   Q +   + +L P      V
Sbjct: 413 GRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPV 472

Query: 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHS 533
           LL NIYA+ G+W   ARVR +M+   +KK+P  S++E+   VH F A    H  ++EI+ 
Sbjct: 473 LLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSEEIYK 532

Query: 534 KLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVK 592
           K E+I    R+ GY+P T++VL ++ E++ +A L  HSEK+ALAF LI    G TI+I+K
Sbjct: 533 KWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATIRIMK 592

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
            + ICGDCHS  +Y SK+ +REIV+RDT RFH+F  G+CSC DY
Sbjct: 593 NIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 159/384 (41%), Gaps = 48/384 (12%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           +I+      S    R IHA +       S  +   LI       ++  A  +FD    ++
Sbjct: 70  LITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARD 129

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +  LI G A+N      +     MLR   +PN  T+  + K+  + +   +G  +H 
Sbjct: 130 MCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           L VK     D +V   L DMY + G+   A  VFD+   KN     + WN LI G ++ G
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG----VSWNALIAGFARKG 245

Query: 214 YLRKAVELFGMMPKKNVAS----------------------WV----------------- 234
                + +F  M +    +                      WV                 
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 305

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +++D + + G +  A ++F+++ +K VV+W +M+  F+Q G   +A+  F +M   GV  
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 365

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAAS 351
           N  T +S L+AC+  G ++ G +  + +   ++ L+  I     +VD+  + G + +A  
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMM--KEYNLEPEIDHYVTVVDLLGRAGLLNDALV 423

Query: 352 LVFGETKEKDLLTWTAMIWGLAIH 375
            +F    +     W A++    +H
Sbjct: 424 FIFKMPMKPTAAVWGALLGSCRMH 447



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 13/277 (4%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++   KP N  T   ++    +S S+    QIHA  + ++      + + L+   +    
Sbjct: 157 LRGRFKP-NGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGR 215

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A+++FD    KN   +N LI G A     ++ +  F  M R        TY  V  +
Sbjct: 216 MDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSA 275

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           +A +  L  G+ +H  ++KSG    AFV   + DMY + G    A KVFD   +K+    
Sbjct: 276 IAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKD---- 331

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFE 254
           V+ WN ++   ++ G  R+AV  F  M K     N  +++S++      G +K+  + F+
Sbjct: 332 VVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD 391

Query: 255 QMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQM 287
            M E      +  +  +++   + G    AL   F+M
Sbjct: 392 MMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 428



 Score = 42.0 bits (97), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 49/254 (19%), Positives = 104/254 (40%), Gaps = 15/254 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           + + T + + S I    + +Q + +HA +I      S+ +   ++   +   S+  A  +
Sbjct: 264 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 323

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    K++  +N ++   A+    +  ++HF  M +  V  N++T+  +  + +   L+
Sbjct: 324 FDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 383

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+    ++ +  +E +    V + D+  + G    A     + P K    +  +W  L
Sbjct: 384 KEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMK---PTAAVWGAL 440

Query: 206 INGC-----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +  C     +KIG    A  +F + P  +    V L + +   G    A  + + M   G
Sbjct: 441 LGSCRMHKNAKIGQF-AADHVFELDP-DDTGPPVLLYNIYASTGQWDAAARVRKMMKATG 498

Query: 261 V-----VSWTAMIN 269
           V      SW  + N
Sbjct: 499 VKKEPACSWVEIEN 512


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 156/435 (35%), Positives = 257/435 (59%), Gaps = 33/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI  + +    + A ++F++MP++ +V+W +MI+G+ QNG A +A+ +F +M ++ V  
Sbjct: 148 ALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEP 207

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           +  T VS LSAC+++G+L+ G  +H+ I  +   +   + T+LV+M+++CG++  A  VF
Sbjct: 208 DSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVF 267

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               E +++ WTAMI G  +HG   +A++ F +M   G  P+   F+A+L+AC ++G + 
Sbjct: 268 YSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLID 327

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-----NSQNSFT-------- 461
              + F SM+ +Y + P V+HH  +V++  R G  ++ YQ     NS             
Sbjct: 328 EGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLG 387

Query: 462 ----------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                            L+  +P++P  YVLLSN+YA  GR   V  VR +M +R +KK 
Sbjct: 388 ACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQ 447

Query: 506 PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEK 562
            G+S I+V+   + F  G   H    EI+  L++++   ++ GY P  E  +H ++ EE+
Sbjct: 448 VGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCKDAGYAPVPESAMHELEGEER 507

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           E AL  HSEKLA+AFGL++T  G T++IVK L IC DCHS +K+ S +  REI++RD  R
Sbjct: 508 EYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLR 567

Query: 622 FHYFKDGTCSCRDYW 636
           FH+F++G+CSC DYW
Sbjct: 568 FHHFREGSCSCSDYW 582



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 1/205 (0%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           G +     LF  + +     + ++I   S+ G +  A+  + +ML + +  + +T  S +
Sbjct: 56  GSIAYTRRLFRSVSDPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVI 115

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA +  L  G  VH+++  + +     +  AL+  YAK      A  VF E  ++ ++
Sbjct: 116 KACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIV 175

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            W +MI G   +G   +A++ F KM  S  EPD   F+++L+AC   G +       D +
Sbjct: 176 AWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCI 235

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQ 448
                I  +V   T +VN+ SR G 
Sbjct: 236 -VGSGITMNVVLATSLVNMFSRCGD 259


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 207/665 (31%), Positives = 331/665 (49%), Gaps = 81/665 (12%)

Query: 48   RQIHAQIILHNLF-ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            +++HA +    L  A   I   L++      +ID A S+F     K+   +N +I GL  
Sbjct: 475  QEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDH 534

Query: 107  NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
            N  F+  +S F  M R  + P+  +      S +SL  L+LGR +H    K G++ D  V
Sbjct: 535  NERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSV 594

Query: 167  RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-----IGYLRKAVEL 221
               L  +Y +        KVF + PE ++    + WN  I   +K     +  L+  +E+
Sbjct: 595  SNALLTLYAETDSINECQKVFFQMPEYDQ----VSWNSFIGALAKYEASVLQALKYFLEM 650

Query: 222  F--GMMPKK----NVASWVS-----------------------------LIDGFMRKGDL 246
               G  P +    N+ + VS                             L+  + +   +
Sbjct: 651  MQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQM 710

Query: 247  KKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
            +    +F +M E+   VSW +MI+G+  +G   KA+ + + M+  G + + FT  + LSA
Sbjct: 711  EDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSA 770

Query: 306  CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            CA V  LE G+ VH             +G+ALVDMYAKCG I+ AS  F     +++ +W
Sbjct: 771  CASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSW 830

Query: 366  TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +MI G A HG  ++A++ F +M   G  PD   F+ +L+AC + G V      F SM  
Sbjct: 831  NSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGE 890

Query: 426  DYFIEPSVKHHTVVVNLLSRVGQ------------------------------DSQGYQN 455
             Y + P ++H + +V+LL R G                               + +  + 
Sbjct: 891  VYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTEL 950

Query: 456  SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
             Q +   L++L+P++  +YVLLSN++AA G W+DV   R  M++ ++KKD G S++ +  
Sbjct: 951  GQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKD 1010

Query: 516  HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEK 572
             VH F AG   H   ++I+ KL+++M   R+ GY+P T++ L++++ E +E L   HSEK
Sbjct: 1011 GVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEK 1070

Query: 573  LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCS 631
            LA+AF L + +    I+I+K L +CGDCH+  KY SKI  R+I+LRD+ RFH+F  G CS
Sbjct: 1071 LAIAFVLTRKSE-LPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCS 1129

Query: 632  CRDYW 636
            C DYW
Sbjct: 1130 CGDYW 1134



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 106/429 (24%), Positives = 185/429 (43%), Gaps = 58/429 (13%)

Query: 25  PSNNITETHIISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDY 81
           PSN      +IS + S +S   L   RQIH +     L     ++  L++  +   SI+ 
Sbjct: 555 PSN----FSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINE 610

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLA--ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
              +F      +   +N  I  LA  E S  Q+ + +F+ M++   RPNR+T+  +  +V
Sbjct: 611 CQKVFFQMPEYDQVSWNSFIGALAKYEASVLQA-LKYFLEMMQAGWRPNRVTFINILAAV 669

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           +S S+L LG  +H LI+K  V  D  +   L   Y +  +      +F    E+    S 
Sbjct: 670 SSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVS- 728

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKK------------------------------- 228
             WN +I+G    G L KA++L   M ++                               
Sbjct: 729 --WNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERGMEVHAC 786

Query: 229 --------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                   +V    +L+D + + G +  A   FE MP + + SW +MI+G++++G  +KA
Sbjct: 787 AVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKA 846

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALV 338
           L +F +M   G   +  T V  LSAC+ VG ++ G + H       +GL   I   + +V
Sbjct: 847 LKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYK-HFKSMGEVYGLSPRIEHFSCMV 905

Query: 339 DMYAKCGNIEA-ASLVFGETKEKDLLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPD 396
           D+  + G+++     +     + ++L W  ++      +GR  +  Q   KM+    EP 
Sbjct: 906 DLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIE-LEPQ 964

Query: 397 GTVFLAILT 405
             V   +L+
Sbjct: 965 NAVNYVLLS 973



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 162/390 (41%), Gaps = 62/390 (15%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    KNL  ++ LI G  +N       S F  ++   + PN        ++   
Sbjct: 194 ARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQ 253

Query: 142 L--SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL-GKTRGAFKVFDETPEKNKSES 198
              + + LG  +H  I K     D  +   L  MY    G    A +VFDE   +N    
Sbjct: 254 CGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNS--- 310

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-----------ASWVS------------ 235
            + WN +I+   + G    A +LF +M  + V            S V+            
Sbjct: 311 -VTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVL 369

Query: 236 ----------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ 273
                                 L++GF R G +  A  +F+QM ++  V+   ++ G ++
Sbjct: 370 LEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLAR 429

Query: 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR----VHNYISCNDFGL 329
             + E+A  +F +M D  V  N  ++V  LS   +   L+ G R    VH Y+  +  GL
Sbjct: 430 QHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRS--GL 486

Query: 330 KGA---IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
             A   IG ALV+MY KC  I+ A  VF     KD ++W +MI GL  + R+E+A+  F 
Sbjct: 487 VDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFH 546

Query: 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
            M  +G  P     ++ L++C   G + L 
Sbjct: 547 TMKRNGMVPSNFSVISTLSSCSSLGWLTLG 576



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 102/179 (56%), Gaps = 7/179 (3%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI+ ++R G+L  A +LF++MP+K +VSW+ +I+G++QN   ++A ++F  ++ +G+  
Sbjct: 180 TLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLP 239

Query: 295 NDFTVVSALSACAKVGA--LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-GNIEAAS 351
           N F V SAL AC + G+  ++ G+++H +I          +   L+ MY+ C G+I+ A 
Sbjct: 240 NHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAH 299

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE----PDGTVFLAILTA 406
            VF E K ++ +TW ++I      G    A + F  M   G E    P+     +++TA
Sbjct: 300 RVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTA 358



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 69/288 (23%), Positives = 137/288 (47%), Gaps = 56/288 (19%)

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH  + K+G   D F    L ++YV++G    A K+FDE P+KN    ++ W+ LI+G +
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKN----LVSWSCLISGYT 217

Query: 211 KIGYLRKAVELF------GMMP------------KKNVASWVSL---IDGFMRK------ 243
           +     +A  LF      G++P            ++  ++ + L   I  F+ K      
Sbjct: 218 QNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSD 277

Query: 244 ---------------GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                          G +  A  +F+++  +  V+W ++I+ + + G+A  A  +F  M 
Sbjct: 278 MILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQ 337

Query: 289 DAGV----RANDFTVVSALSACAKVGALEAGV----RVHNYISCNDFGLKGAIGTALVDM 340
             GV    R N++T+ S ++A   +   + G+    ++   I  + F     +G+ALV+ 
Sbjct: 338 MEGVELNLRPNEYTLCSLVTAACSLA--DCGLVLLEQMLTRIEKSGFLRDLYVGSALVNG 395

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           +A+ G ++ A ++F +  +++ +T   ++ GLA   + E+A + FK+M
Sbjct: 396 FARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEM 443



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 78/169 (46%), Gaps = 9/169 (5%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+++Y + GN+ +A  +F E  +K+L++W+ +I G   +   ++A   FK ++ SG  P+
Sbjct: 181 LINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPN 240

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQDSQGYQ 454
                + L AC   G   + L     M+   FI   P V    +   L+S     S    
Sbjct: 241 HFAVGSALRACQQCGSTGIKLG----MQIHAFICKLPCVSDMILSNVLMSMYSDCSGSID 296

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
           ++   F    ++K ++  ++  + ++Y   G      ++ ++MQ   ++
Sbjct: 297 DAHRVFD---EIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVE 342


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 193/678 (28%), Positives = 337/678 (49%), Gaps = 75/678 (11%)

Query: 34  IISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFD 87
           +++L+  S + K LR    IHAQ+++ N  +     TQ+ S  +L+        A  +FD
Sbjct: 26  VVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFD 85

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLS 146
               +N+  ++ L+ G          +  F  ++ L S  PN   +  V    A    + 
Sbjct: 86  RMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVK 145

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE-------------- 192
            G+  H  ++KSG+    +V+  L  MY +      A ++ D  P               
Sbjct: 146 EGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALV 205

Query: 193 ------------KNKSESVLLWNVL-----INGCSKIGYLRKAVELFGMMPKKNVASWV- 234
                       K   +  ++W+ +     +  C++I  L+  +++   + K  +   V 
Sbjct: 206 ESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVF 265

Query: 235 ---SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
              +LID + + G++  A + F+ + ++ VV+WTA++  + QNG  E+ L +F +M    
Sbjct: 266 VSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELED 325

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
            R N+FT    L+ACA + AL  G  +H  I  + F     +G AL++MY+K GNI+++ 
Sbjct: 326 TRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSY 385

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
            VF     +D++TW AMI G + HG  +QA+  F+ MM +G  P+   F+ +L+AC +  
Sbjct: 386 NVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLA 445

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------------- 452
            V+    +FD +   + +EP ++H+T +V LL R G   +                    
Sbjct: 446 LVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRT 505

Query: 453 ----------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                     Y   +     ++Q+ P    +Y LLSN++A   +W  V ++R LM+ R+I
Sbjct: 506 LLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNI 565

Query: 503 KKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+PG S++++  + H F  E   H  + +I  K++ ++A  +  GY P    VLH++++
Sbjct: 566 KKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVED 625

Query: 561 EKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           E++E  L  HSEKLALA+GL++  P   I+I+K L +C DCH  +K  SK + R I++RD
Sbjct: 626 EQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRD 685

Query: 620 -TRFHYFKDGTCSCRDYW 636
             RFH+F++G C+C D+W
Sbjct: 686 ANRFHHFREGLCTCNDHW 703


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  301 bits (770), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 171/507 (33%), Positives = 280/507 (55%), Gaps = 35/507 (6%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFDHFTPKNL 94
           L  S  +   L+QIHA +I+    +++    +LI  SS ++  ++ YA  +F H T  + 
Sbjct: 19  LWRSCTTIGTLKQIHASMIVKGFNSNTSALRELIYASSIAISGTMAYAHQLFPHITEPDT 78

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            ++N +IRG A++    + IS +  M    VRP++ T+PFV K+   L  + +G G+H  
Sbjct: 79  FMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGR 138

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           + + G E + FVR  L   +   G    A  +FD + +++    V+ W+ L  G ++ G 
Sbjct: 139 VFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRD----VVAWSALTAGYARRGE 194

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           L  A +LF  MP K++ SW  +I G+ ++G+++ A +LF+++P++ VV+W AMI G+   
Sbjct: 195 LGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGYVLC 254

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAI 333
           G  ++AL MF +M   G   ++ T++S LSAC  +G L+AG R+H  IS   F  L   +
Sbjct: 255 GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLL 314

Query: 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393
           G AL+DMYAKCG+I  A  VF   +EKD+ TW +++ GLA HG  E++I  F +M     
Sbjct: 315 GNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKI 374

Query: 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453
            PD   F+ +L AC ++G+V+    +FD MR +Y IEP+++H+  +V+LL R G  ++ +
Sbjct: 375 RPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAF 434

Query: 454 ----------------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485
                                       +  + +  +LL+++      YVLLSNIYA+ G
Sbjct: 435 DFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMRHDESGDYVLLSNIYASRG 494

Query: 486 RWKDVARVRTLMQRRSIKKDPGWSYIE 512
            W  V +VR LM    ++K+ G S IE
Sbjct: 495 EWDGVEKVRKLMDDSGVRKEAGCSLIE 521


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 183/583 (31%), Positives = 299/583 (51%), Gaps = 88/583 (15%)

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           + PN+ TYP + K+  +L    LG  +H  ++K+G +++ +V   L DMY + GK   A 
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-------ASWVS-- 235
           K+F    E +    V+ W  +I G ++     +A+ LF  M  + +       AS +S  
Sbjct: 494 KIFRRLKEND----VVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISAC 549

Query: 236 ------------------------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                         L+  + R G +++A   F+Q+  K  VSW 
Sbjct: 550 AGIQALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWN 609

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           ++++GF+Q+G  E+AL +F QM  AG+  N FT  SA+SA A +  +  G ++H  I   
Sbjct: 610 SLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKT 669

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            +  +  +  AL+ +YAKCG I             D ++W +MI G + HG   +A++ F
Sbjct: 670 GYDSETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLF 716

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           + M      P+   F+ +L+AC + G V   +++F SM   + + P  +H+  VV+LL R
Sbjct: 717 EDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGR 776

Query: 446 VGQDSQG-------------------------YQN---SQNSFTKLLQLKPKHPSSYVLL 477
            G  S+                          ++N    + + + LL+L+PK  ++YVL+
Sbjct: 777 SGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLV 836

Query: 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKL 535
           SN+YA  G+W    R R +M+ R +KK+PG S++EV+  VH F AG   H  A  I+  L
Sbjct: 837 SNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYL 896

Query: 536 EDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
             +   A E GY+P    +L + +  +K+     HSE+LA+AFGL+  T  T + + K L
Sbjct: 897 RGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNL 956

Query: 595 TICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +C DCH+ +K+ SKI+ R I++RD+ RFH+FK G+CSC+DYW
Sbjct: 957 RVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 189/389 (48%), Gaps = 20/389 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +Q+H  ++     + + +   L++  S   ++  A  IF   + ++   +N LI GLA+ 
Sbjct: 271 KQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQ 330

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            +    ++ F  M     +P+ +T   +  + AS+  L  G+  H   +K+G+  D  V 
Sbjct: 331 GYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVE 390

Query: 168 VHLADMYV----------------QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
             L D+YV                QL     +F++F +   +    +   +  ++  C+ 
Sbjct: 391 GSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTT 450

Query: 212 IGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
           +G      ++   + K     NV     LID + + G L  A ++F ++ E  VVSWTAM
Sbjct: 451 LGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAM 510

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G++Q+ +  +AL +F +M D G+++++    SA+SACA + AL+ G ++H     + +
Sbjct: 511 IAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGY 570

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
               +IG ALV +YA+CG +  A   F +   KD ++W +++ G A  G +E+A+  F +
Sbjct: 571 SDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQ 630

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           M  +G E +   F + ++A      V++ 
Sbjct: 631 MNKAGLEINSFTFGSAVSAAANIANVRIG 659



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 171/390 (43%), Gaps = 44/390 (11%)

Query: 43  STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIR 102
           S + + QIHA+ I     +S+ I   LI     +  +  A  +F++   ++   +  +I 
Sbjct: 179 SFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMIS 238

Query: 103 GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162
           GL++N + +  +  F                 V  +   +     G+ LH L++K G   
Sbjct: 239 GLSQNGYEEEAMLLFC--------------QIVLSACTKVEFFEFGKQLHGLVLKQGFSS 284

Query: 163 DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF 222
           + +V   L  +Y + G    A ++F    ++++    + +N LI+G ++ GY+ +A+ LF
Sbjct: 285 ETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDR----VSYNSLISGLAQQGYINRALALF 340

Query: 223 GMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING-------- 270
             M     K +  +  SL+      G L   G+ F     K  ++   ++ G        
Sbjct: 341 KKMNLDCQKPDCVTVASLLSACASVGALPN-GKQFHSYAIKAGMTSDIVVEGSLLDLYVK 399

Query: 271 -------------FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
                        + Q     K+  +F QM   G+  N FT  S L  C  +GA + G +
Sbjct: 400 CSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQ 459

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H  +    F     + + L+DMYAK G ++ A  +F   KE D+++WTAMI G   H +
Sbjct: 460 IHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDK 519

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           + +A+  FK+M   G + D   F + ++AC
Sbjct: 520 FTEALNLFKEMQDQGIKSDNIGFASAISAC 549



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 158/377 (41%), Gaps = 32/377 (8%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   I+    +  +T    QIH Q++      +  +++ LI   + H  +D+AL IF
Sbjct: 437 NQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIF 496

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                 ++  +  +I G  ++  F   ++ F  M    ++ + + +     + A +  L 
Sbjct: 497 RRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALD 556

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR +H     SG   D  +   L  +Y + GK R A+  FD+   K+     + WN L+
Sbjct: 557 QGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDN----VSWNSLV 612

Query: 207 NGCSKIGYLRKAVELFGMMPKKNV-------ASWVSL------------IDGFMRKGDLK 247
           +G ++ GY  +A+ +F  M K  +        S VS             I G +RK    
Sbjct: 613 SGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYD 672

Query: 248 KAGE-------LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300
              E       L+ +      +SW +MI G+SQ+G   +AL +F  M    V  N  T V
Sbjct: 673 SETEVSNALITLYAKCGTIDDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFV 732

Query: 301 SALSACAKVGALEAGVRVHNYIS-CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK- 358
             LSAC+ VG ++ G+     +S  ++   K      +VD+  + G +  A     E   
Sbjct: 733 GVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPI 792

Query: 359 EKDLLTWTAMIWGLAIH 375
           + D + W  ++    +H
Sbjct: 793 QPDAMVWRTLLSACNVH 809



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 122/278 (43%), Gaps = 58/278 (20%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN 229
           L D Y+  G    A  VFDE P +    S+  WN + N       + +   LF  M  KN
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIR----SLSCWNRIFNTFIAERLMGRVPGLFRRMLTKN 158

Query: 230 V---------------ASWVS-------------------------LIDGFMRKGDLKKA 249
           V                + VS                         LID + + G L  A
Sbjct: 159 VEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSA 218

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
            ++FE +  +  VSW AMI+G SQNG  E+A+ +F Q++              LSAC KV
Sbjct: 219 KKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV--------------LSACTKV 264

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
              E G ++H  +    F  +  +  ALV +Y++ GN+ +A  +F    ++D +++ ++I
Sbjct: 265 EFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLI 324

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            GLA  G   +A+  FKKM     +PD     ++L+AC
Sbjct: 325 SGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSAC 362



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 95/219 (43%), Gaps = 22/219 (10%)

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYL--------RKAVELF-----GMMPKKNVASWV 234
           DE PEK         N +    S IGYL        R   + F     G +  ++    +
Sbjct: 50  DEIPEKE--------NEMDGNASGIGYLHLMEQHGVRANSQTFLWLLEGCLNSRSFYDGL 101

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LID ++  GDL  A  +F++MP + +  W  + N F       +   +F +ML   V  
Sbjct: 102 KLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEF 161

Query: 295 NDFTVVSALSACA-KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           ++      L  C+    +     ++H     + F     I   L+D+Y K G + +A  V
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKV 221

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           F   K +D ++W AMI GL+ +G  E+A+  F +++ S 
Sbjct: 222 FENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVLSA 260



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/290 (21%), Positives = 122/290 (42%), Gaps = 28/290 (9%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           ++ T A+     ++     S+NI     IS      +  Q RQIHAQ  L        I 
Sbjct: 518 DKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSDDLSIG 577

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             L+S  +    +  A + FD    K+   +N L+ G A++ +F+  ++ F  M +  + 
Sbjct: 578 NALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLE 637

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG---- 182
            N  T+     + A+++ + +G+ +H +I K+G + +  V   L  +Y + G        
Sbjct: 638 INSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDDISWN 697

Query: 183 --------------AFKVFDETPEKNKSESVLLWNVLINGCSKIG-------YLRKAVEL 221
                         A K+F++  + +   + + +  +++ CS +G       Y R   E 
Sbjct: 698 SMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEA 757

Query: 222 FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMING 270
             ++PK     +  ++D   R G L +A    E+MP +   + W  +++ 
Sbjct: 758 HNLVPKPE--HYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSA 805


>gi|302793743|ref|XP_002978636.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
 gi|300153445|gb|EFJ20083.1| hypothetical protein SELMODRAFT_109283 [Selaginella moellendorffii]
          Length = 438

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 245/437 (56%), Gaps = 32/437 (7%)

Query: 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           S V+++  F + G+L  A  +F +     +  W AMI  + Q+G++ +A+ +F ++L   
Sbjct: 2   SLVTVLSAFAKVGNLHLAARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARR 61

Query: 292 VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351
           +  N  T++  L ACA + AL  G RVH     +    + A+ TA+VDMY+KCG ++ A 
Sbjct: 62  IEPNSVTLMEVLDACASLAALRDGKRVHAIARDHGVDSEVAVATAIVDMYSKCGCLDEAV 121

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
             F   +  D ++WTAM+   A HG  ++A+  F++M   G +P+   F+ +L+AC + G
Sbjct: 122 EAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGHKPNYVTFVHLLSACSHKG 181

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDSQGYQN-------------- 455
            V+    +FD M   Y I P  +H+  +V+LL R G   +++ + N              
Sbjct: 182 LVEEGRKYFDLMTARYGIAPDAQHYACMVDLLGRAGYLDEAEDFLNRMPGAPHAAVLKSL 241

Query: 456 ------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
                        +    ++L+        YV+L++IY A G+W++ AR+R+LM  R ++
Sbjct: 242 LSACRSYKDVDRGERIAKRMLESFWDESMPYVVLASIYRAAGKWEEAARIRSLMVERGVR 301

Query: 504 KDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KE 560
           KDPG S IEV G V  F AG   H     I +KL+++ +  +E GY+P T  VLH++ +E
Sbjct: 302 KDPGRSAIEVEGRVFEFVAGDMSHVQMNPIRAKLQELSSAMKEAGYVPDTSLVLHDVAEE 361

Query: 561 EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD- 619
           EKE+ L  HSEKLA+AFGL+ T  G+ I+++K L +C DCH   K  S I QR IV RD 
Sbjct: 362 EKEQVLLWHSEKLAVAFGLLNTPAGSPIRVIKNLRVCKDCHDAAKLISAIEQRRIVFRDL 421

Query: 620 TRFHYFKDGTCSCRDYW 636
           +RFH+F++G CSC DYW
Sbjct: 422 SRFHHFENGVCSCGDYW 438



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 83/210 (39%), Gaps = 39/210 (18%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  IF       +  +N +I    ++   +  I  F  +L   + PN +T   V  + AS
Sbjct: 19  AARIFARTDRSYIFPWNAMIAAYVQHGDSRQAIRLFDELLARRIEPNSVTLMEVLDACAS 78

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L+ L  G+ +H +    GV+ +  V   + DMY                           
Sbjct: 79  LAALRDGKRVHAIARDHGVDSEVAVATAIVDMY--------------------------- 111

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG- 260
                   SK G L +AVE F  + + +  SW +++  F + G + +A   F++M E+G 
Sbjct: 112 --------SKCGCLDEAVEAFARIERHDTVSWTAMLAAFAQHGHIDRALATFQRMQEQGH 163

Query: 261 ---VVSWTAMINGFSQNGEAEKALAMFFQM 287
               V++  +++  S  G  E+    F  M
Sbjct: 164 KPNYVTFVHLLSACSHKGLVEEGRKYFDLM 193


>gi|147846621|emb|CAN83751.1| hypothetical protein VITISV_040023 [Vitis vinifera]
          Length = 496

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 186/539 (34%), Positives = 283/539 (52%), Gaps = 75/539 (13%)

Query: 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV---RVHL---------------- 170
           +TYPFV K+    S+   G  +H   VKSG E D+++    +HL                
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVH-THVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNL 59

Query: 171 ------------ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218
                        D YV+ G+   A  VFD    ++    V+ WN +ING + +G + +A
Sbjct: 60  CSDRDLVSWNAMIDGYVKRGEMGHARMVFDRMVCRD----VISWNTMINGYAIVGKIDEA 115

Query: 219 VELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
             LF  MP++N+ S  S++ GF++ G+++ A  LF +MP + VVSW +M+  ++Q G+  
Sbjct: 116 KRLFDEMPERNLVSXNSMLXGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPN 175

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +ALA+F QM   GV+ ++ TVVS LSACA +GAL+ G+ +H YI+ N   +   +GTALV
Sbjct: 176 EALALFDQMXAVGVKPSEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALV 235

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMYAKCG I  A+ VF   + KD+L W  +I G+AI G  ++A Q FK+M  +G EP+  
Sbjct: 236 DMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDI 295

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458
            F+A+L+AC ++G V       D M   Y IEP V+H+  V++LL+R G   +  +    
Sbjct: 296 TFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAME---- 351

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
               L+   P  P+   L + +     R      +  ++ +R I   P  S         
Sbjct: 352 ----LIGTMPMEPNPCALGALLGGC--RIHGNFELGEMVGKRLINLQPCQS--------- 396

Query: 519 RFEAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFG 578
                          +L+  +  + + G       +L   +E+KE AL  HSEKLA+A+G
Sbjct: 397 --------------GRLKSAIGXSADTG-----NXLLDMEEEDKEHALAVHSEKLAIAYG 437

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           L+       I+IVK L +C DCH + K  SK+   EI++RD  RFH+F+DG CSC D+W
Sbjct: 438 LLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGGEIIVRDRNRFHHFEDGECSCLDFW 496



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/272 (23%), Positives = 123/272 (45%), Gaps = 20/272 (7%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           +++ A  +F     +++  +N ++   A+       ++ F  M  + V+P+  T   +  
Sbjct: 142 NVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMXAVGVKPSEATVVSLLS 201

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           + A L  L  G  LH  I  + +E ++ V   L DMY + GK   A +VF+      +S+
Sbjct: 202 ACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM----ESK 257

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
            VL WN +I G + +G++++A +LF  M +  V     ++V+++      G + +  +L 
Sbjct: 258 DVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLL 317

Query: 254 EQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           + M      E  V  +  +I+  ++ G  E+A+ +   M    +  N   + + L  C  
Sbjct: 318 DCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTM---PMEPNPCALGALLGGCRI 374

Query: 309 VGALE----AGVRVHNYISCNDFGLKGAIGTA 336
            G  E     G R+ N   C    LK AIG +
Sbjct: 375 HGNFELGEMVGKRLINLQPCQSGRLKSAIGXS 406


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 205/680 (30%), Positives = 340/680 (50%), Gaps = 80/680 (11%)

Query: 32  THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HF 89
            H+++    + S K   QIH QII++N  +   +   LI+  +    ++ AL +F   H 
Sbjct: 146 NHLLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHH 205

Query: 90  TPKNLHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
             K +  +  LI  L+  N H Q+ +S F  M      PN+ T+  +  + A+  ++  G
Sbjct: 206 HFKTIVTWTSLITHLSHFNMHLQA-LSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHG 264

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + LH LI K G + + FV   L DMY +      A +VFD+ PE+N    ++ WN +I G
Sbjct: 265 QQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERN----LVSWNSMIVG 320

Query: 209 ------------------------------------CSKIGYLRKAVELFGMMPKKNVAS 232
                                               C+ +G L    ++ G++ K  +  
Sbjct: 321 FFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVP 380

Query: 233 WV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 SL+D + +     +  +LF+ + ++ VV+W  ++ GF QN + E+A   F+ M 
Sbjct: 381 LTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMR 440

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G+  ++ +  + L + A + AL  G  +H+ I    +     I  +L+ MYAKCG++ 
Sbjct: 441 REGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLV 500

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF   ++ ++++WTAMI    +HG   Q I+ F+ M+  G EP    F+ +L+AC 
Sbjct: 501 DAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACS 560

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---------------- 452
           ++G+V+  L  F+SM+  + + P  +H+  +V+LL R G   +                 
Sbjct: 561 HTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVW 620

Query: 453 ---------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                    Y N    + +  +L +++P +P +YVLL+N+    GR ++   VR LM   
Sbjct: 621 GALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVN 680

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            ++K+PG S+I+V      F A    H  + EI+  LE +    +++GY+  TE+V +++
Sbjct: 681 GVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHL 740

Query: 559 KE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +E E+E+ L  HSEKLALAFGL+     + I+I K L  CG CH++MK ASKI  REI++
Sbjct: 741 EENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIV 800

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH F DG CSC DYW
Sbjct: 801 RDINRFHRFADGFCSCGDYW 820


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 191/639 (29%), Positives = 320/639 (50%), Gaps = 68/639 (10%)

Query: 65  ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS 124
           +   L+ +   H  +  A  +F     ++   +N ++ G ++       +  F  M R  
Sbjct: 177 VCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKG 236

Query: 125 VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           +   R T+  V      +  L LGR +H L+ ++    + FV   L D Y +        
Sbjct: 237 LAATRFTFSTVLTVATGVGDLCLGRQVHGLVARA-TSSNVFVNNSLLDFYSKCDCLDEMK 295

Query: 185 KVFDETPEK-NKSESVLLWNVLINGCSKI-----------GYLRKAV------ELFGMMP 226
           K+F E  E+ N S +V++     N C+ I            + R+A+       + G +P
Sbjct: 296 KLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVP 355

Query: 227 KKNVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
              +   +                 +LID + + G L  A   F    +K  VSWTAMI 
Sbjct: 356 HIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMIT 415

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G  QNG+ E+AL +F  M  AG+  +  T  S + A + +  +  G ++H+Y+  +    
Sbjct: 416 GCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMS 475

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
               G+AL+DMY KCG ++ A   F E  E++ ++W A+I   A +G+ + AI+ F+ M+
Sbjct: 476 SVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGML 535

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ- 448
             G +PD   FL++L+AC ++G  +  + +F+ M ++Y I P  +H++ V++ L RVG+ 
Sbjct: 536 CYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRF 595

Query: 449 --------------------------DSQGYQN-SQNSFTKLLQLKPKHPSSYVLLSNIY 481
                                      + G Q+ ++ +  KL  +     + YV+LSNI+
Sbjct: 596 DKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIF 655

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIM 539
           A  G+W+D A V+ +M+ R ++K+ G+S++EV   V+ F +    + +  EI  +LE + 
Sbjct: 656 AKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLY 715

Query: 540 AGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
               +QGY P T   L  + ++ K E+L  HSE+LA+AF LI T PGT I+++K L+ C 
Sbjct: 716 KEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLSACV 775

Query: 599 DCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           DCHS +K  SKI  R+I++RD +RFH+FKDG CSC DYW
Sbjct: 776 DCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 113/436 (25%), Positives = 187/436 (42%), Gaps = 58/436 (13%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHK 77
           +K+   P+       + SLI SS    Q R +  Q+   +N F+ +R+ +    S  L  
Sbjct: 26  VKTGFDPATYRLNLLLHSLI-SSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSA 84

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLT---- 131
           +    LS   H   ++   + V+I   A    +     +S F  MLR  V P+R+T    
Sbjct: 85  AHHLFLSSPPHL--RDAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATV 142

Query: 132 --YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH-LADMYVQLGKTRGAFKVFD 188
              P  S   A+  +++    LH   +K G+ +   V  + L D Y + G    A +VF 
Sbjct: 143 LNLPPASGGTAAAIIIA---SLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQ 199

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV-------------- 234
           E P ++     + +N ++ GCSK G   +A++LF  M +K +A+                
Sbjct: 200 EMPHRDS----VTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVG 255

Query: 235 ------------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
                                   SL+D + +   L +  +LF +M E+  VS+  MI G
Sbjct: 256 DLCLGRQVHGLVARATSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAG 315

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           ++ N  A   L +F +M             S LS    V  +  G ++H  +       +
Sbjct: 316 YAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSE 375

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +G AL+DMY+KCG ++AA   F    +K  ++WTAMI G   +G+ E+A+Q F  M  
Sbjct: 376 DLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRR 435

Query: 391 SGTEPDGTVFLAILTA 406
           +G  PD   F + + A
Sbjct: 436 AGLSPDRATFSSTIKA 451



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 13/249 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIHAQ++L  L +   +   LI   S    +D A + F +   K    +  +I G  +N
Sbjct: 361 KQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQN 420

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M R  + P+R T+    K+ ++L+++ LGR LH  +++SG     F  
Sbjct: 421 GQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSG 480

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMP 226
             L DMY + G    A + FDE PE+N     + WN +I+  +  G  + A+++F GM+ 
Sbjct: 481 SALLDMYTKCGCLDEALQTFDEMPERNS----ISWNAVISAYAHYGQAKNAIKMFEGMLC 536

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSW----TAMINGFSQNGEAE 278
              K +  +++S++      G  ++  + FE M  E G+  W    + +I+   + G  +
Sbjct: 537 YGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFD 596

Query: 279 KALAMFFQM 287
           K   M  +M
Sbjct: 597 KVQEMLGEM 605



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 100/226 (44%), Gaps = 15/226 (6%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVA-SWVSLIDGFMRKGDLKKAGELFEQMPE--K 259
           N+L++     G L +A  LF  MP +N A S   ++ G+ R G L  A  LF   P   +
Sbjct: 38  NLLLHSLISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLR 97

Query: 260 GVVSWTAMINGFSQ--NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
             V+WT MI  F+      A  A+++F  ML  GV  +  TV + L+     G   A + 
Sbjct: 98  DAVTWTVMIGAFASAPGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAII 157

Query: 318 VHNYISCNDFGLK-------GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
           +    S + F LK         +   L+D Y K G + AA  VF E   +D +T+ AM+ 
Sbjct: 158 I---ASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMM 214

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           G +  G + +A+  F  M   G       F  +LT     G + L 
Sbjct: 215 GCSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLG 260


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  301 bits (770), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/526 (34%), Positives = 269/526 (51%), Gaps = 71/526 (13%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
            +L+QI A  + + +      T QLI S     SI YA  +FD      + ++N LI+  
Sbjct: 2   NRLKQIQAYTLRNGI----EHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAY 57

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
           + +     C S +  M      PN  ++ F+  + ASLS    GR LH   VKSG   D 
Sbjct: 58  SSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDV 117

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
           F    L DMY                                   +K+G L  A + F  
Sbjct: 118 FALTALVDMY-----------------------------------AKLGLLSLARKQFDE 142

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           M  ++V +W S+I G+ R GDL+ A ELF  MP + V SWTAMI+G++QNG+  KAL+MF
Sbjct: 143 MTVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMF 202

Query: 285 FQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
             M +   +R N+ T+ S L ACA +GALE G R+  Y   N +     +  AL++MYA+
Sbjct: 203 LMMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYAR 262

Query: 344 CGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
           CG I+ A  VF E    ++L +W +MI GLA+HGR ++AI+ F KM+  G  PD   F+ 
Sbjct: 263 CGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVG 322

Query: 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------- 453
           +L AC + G V    +FF+SM  D+ I P ++H+  +V+LL R G+  + +         
Sbjct: 323 VLLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPME 382

Query: 454 -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                              + ++ +   L +L+P +P +YV+LSNIYA  GRW  VAR+R
Sbjct: 383 PDSVVWGTLLGACSFHGHVELAEKAAGALFELEPSNPGNYVILSNIYATAGRWDGVARLR 442

Query: 495 TLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDI 538
            LM+   I K  G+S+IE  GH+H+F  E   H  + EI++ L+++
Sbjct: 443 KLMKGGKITKAAGYSFIEEGGHIHKFIVEDRSHSRSDEIYALLDEV 488


>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
          Length = 495

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 179/497 (36%), Positives = 260/497 (52%), Gaps = 58/497 (11%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           +L+QI A  + + +      T QLI S     SI YA  +FD      + ++N LI+  +
Sbjct: 3   RLKQIQAYTLRNGI----EHTKQLIVSLLQIPSIPYAHKLFDFIPKPTVFLYNKLIQAYS 58

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
            +     C S +  M      PN  ++ F+  + ASLS    GR LH   VKSG   D F
Sbjct: 59  SHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTHFVKSGFGCDVF 118

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
               L DMY                                   +K+G L  A + F  M
Sbjct: 119 ALTALVDMY-----------------------------------AKLGLLSLARKQFDEM 143

Query: 226 PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
             ++V +W S+I G+ R GDL+ A ELF  MP + V SWTAMI+G++QNG+  KAL+MF 
Sbjct: 144 TVRDVPTWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFL 203

Query: 286 QMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            M +   +R N+ T+ S L ACA +GALE G R+  Y   N +     +  AL++MYA+C
Sbjct: 204 MMEEETEMRPNEVTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARC 263

Query: 345 GNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           G I+ A  VF E    ++L +W +MI GLA+HGR ++AI+ F KM+  G  PD   F+ +
Sbjct: 264 GRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGV 323

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463
           L AC + G V    +FF+SM  D+ I P ++H+  +V+LL                   L
Sbjct: 324 LLACTHGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGP---------------GAL 368

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--E 521
            +L+P +P +YV+LSNIYA  GRW  VAR+R LM+   I K  G+S+IE  GH+H+F  E
Sbjct: 369 FELEPSNPGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFIEEGGHIHKFIVE 428

Query: 522 AGGHKLAKEIHSKLEDI 538
              H  + EI++ L+++
Sbjct: 429 DRSHSRSDEIYALLDEV 445


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/434 (38%), Positives = 248/434 (57%), Gaps = 33/434 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+D + R G +  A  +F+Q+  K  VSW A+I GF++ G+ E  L MF +M   G  A
Sbjct: 81  ALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEA 140

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
             FT  S  SA A +GALE G  VH ++  +   L   +G  ++DMYAK G++  A  VF
Sbjct: 141 THFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVF 200

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
               +KDL+TW +M+   A +G   +A+ +F++M   G   +   FL+ILTAC + G VK
Sbjct: 201 DHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVK 260

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG-------------------------QD 449
               +FD M+ ++ +EP + H+  VV+LL R G                           
Sbjct: 261 EGKQYFDMMK-EHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGS 319

Query: 450 SQGYQNS---QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
            + ++N+   Q +   + +L P      VLL NIYA+ G+W   ARVR +M+   +KK+P
Sbjct: 320 CRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEP 379

Query: 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEE 564
             S++E+   VH F A    H  ++EI+ K E+I    R+ GY+P T++VL ++ E++ +
Sbjct: 380 ACSWVEIENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQ 439

Query: 565 A-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RF 622
           A L  HSEK+ALAF LI    G TI+I+K + ICGDCHS  +Y SK+ +REIV+RDT RF
Sbjct: 440 AKLQYHSEKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRF 499

Query: 623 HYFKDGTCSCRDYW 636
           H+F  G+CSC DYW
Sbjct: 500 HHFSSGSCSCGDYW 513



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 13/272 (4%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
           KP N  T   ++    +S S+    QIHA  + ++      + + L+   +    +D A+
Sbjct: 38  KP-NGFTFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAI 96

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           ++FD    KN   +N LI G A     ++ +  F  M R        TY  V  ++A + 
Sbjct: 97  AVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIG 156

Query: 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
            L  G+ +H  ++KSG    AFV   + DMY + G    A KVFD   +K+    ++ WN
Sbjct: 157 ALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKD----LVTWN 212

Query: 204 VLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
            ++   ++ G  R+AV  F  M K     N  +++S++      G +K+  + F+ M E 
Sbjct: 213 SMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEH 272

Query: 260 G----VVSWTAMINGFSQNGEAEKALAMFFQM 287
                +  +  +++   + G    AL   F+M
Sbjct: 273 NLEPEIDHYVTVVDLLGRAGLLNDALVFIFKM 304



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/326 (22%), Positives = 139/326 (42%), Gaps = 44/326 (13%)

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           + +++  +  LI G A+N      +   + MLR   +PN  T+  + K+  + +   +G 
Sbjct: 2   STRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIGE 61

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H L VK     D +V   L DMY + G+   A  VFD+   KN     + WN LI G 
Sbjct: 62  QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNG----VSWNALIAGF 117

Query: 210 SKIGYLRKAVELFGMMPKKNVAS----------------------WV------------- 234
           ++ G     + +F  M +    +                      WV             
Sbjct: 118 ARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSA 177

Query: 235 ----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
               +++D + + G +  A ++F+ + +K +V+W +M+  F+Q G   +A+  F +M   
Sbjct: 178 FVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKC 237

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EA 349
           GV  N  T +S L+AC+  G ++ G +  + +  ++   +      +VD+  + G + +A
Sbjct: 238 GVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDA 297

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIH 375
              +F    +     W A++    +H
Sbjct: 298 LVFIFKMPMKPTAAVWGALLGSCRMH 323



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 79/151 (52%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           M  + + SWT++I G++QN   ++AL +   ML    + N FT  S L A     +   G
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASSGIG 60

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H      D+     +G+AL+DMYA+CG ++ A  VF + + K+ ++W A+I G A  
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           G  E  +  F +M  +G E     + ++ +A
Sbjct: 121 GDGETTLLMFAEMQRNGFEATHFTYSSVFSA 151



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 51/254 (20%), Positives = 105/254 (41%), Gaps = 15/254 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           + + T + + S I    + +Q + +HA +I      S+ +   ++   +   S+  A  +
Sbjct: 140 ATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKV 199

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FDH   K+L  +N ++   A+    +  ++HF  M +  V  N++T+  +  + +   L+
Sbjct: 200 FDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLV 259

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
             G+    ++ +  +E +    V + D+  + G    A     + P K    +  +W  L
Sbjct: 260 KEGKQYFDMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMK---PTAAVWGAL 316

Query: 206 INGC-----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +  C     +KIG    A  +F + P  +    V L + +   G    A  + + M   G
Sbjct: 317 LGSCRMHKNAKIGQF-AADHVFELDP-DDTGPPVLLYNIYASTGQWDAAARVRKMMKATG 374

Query: 261 V-----VSWTAMIN 269
           V      SW  + N
Sbjct: 375 VKKEPACSWVEIEN 388


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 181/563 (32%), Positives = 295/563 (52%), Gaps = 75/563 (13%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L +G+  H L +  G+  D      L ++Y + G+   A +VFD    +    S++ WN 
Sbjct: 72  LLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVR----SIISWNT 127

Query: 205 LINGCSKIGYLRKAVELFGMMPKK------------------------------------ 228
           +I G +      +A++LF  M ++                                    
Sbjct: 128 MIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLA 187

Query: 229 -NVASWV--SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
            + +S+V  + +D + +   +K A  +FE MPEK  V+W+++  GF QNG  E+ L +F 
Sbjct: 188 LDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQ 247

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
                G++  +FTV S LS CA +  +  G +VH  I  + F     + T+LVD+YAKCG
Sbjct: 248 STQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCG 307

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            IE +  VF + +EK+++ W AMI   + H    +A+  F+KM   G  P+   +L+IL+
Sbjct: 308 QIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILS 367

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN---------- 455
           AC ++G V+   ++F+ +  D   EP+V H++ +V++L R G+  + ++           
Sbjct: 368 ACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTA 427

Query: 456 ------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                             ++ +  +L +L+P++  ++VLLSN+YAA G W++V   R  +
Sbjct: 428 SMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYL 487

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           +    KK+ G S+IE  G +H F AG   H    ++++KLE+I    R+  +   T+  L
Sbjct: 488 RDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDL 547

Query: 556 HNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H++  ++KEE L  HSEKLA AFGLI   P   I I K L ICGDCHS MK  S I++R+
Sbjct: 548 HDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQ 607

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           +++RD  RFH+FKDG+CSC D+W
Sbjct: 608 VIVRDINRFHHFKDGSCSCGDFW 630



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/251 (23%), Positives = 118/251 (47%), Gaps = 13/251 (5%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           + +Q+H   I   L +SS + T  +   +    I  A  +F++   K    ++ L  G  
Sbjct: 175 ECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFV 234

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           +N   +  +  F    R  ++    T   +  + ASL+L+  G  +H +IVK G   + F
Sbjct: 235 QNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLF 294

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L D+Y + G+   +++VF +  EKN    V+LWN +I   S+  +  +A+ LF  M
Sbjct: 295 VATSLVDVYAKCGQIEKSYEVFADMEEKN----VVLWNAMIASFSRHAHSWEAMILFEKM 350

Query: 226 PK----KNVASWVSLIDGFMRKGDLKKAGELF-----EQMPEKGVVSWTAMINGFSQNGE 276
            +     N  +++S++      G +++    F     ++  E  V+ ++ M++   ++G+
Sbjct: 351 QQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGK 410

Query: 277 AEKALAMFFQM 287
            ++A  +  +M
Sbjct: 411 TDEAWKLLDKM 421


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 201/683 (29%), Positives = 331/683 (48%), Gaps = 83/683 (12%)

Query: 35  ISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT- 90
           I+ + S    + LR   +IH  ++   L    +++  L++      S+ +A  +F     
Sbjct: 149 ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 208

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            +N+  ++++    A + +    + HF FML L ++  +     +  + +S +L+  GR 
Sbjct: 209 TRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRL 268

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I  SG E +  V   +  MY + G    A KVFD   E  +   V+ WN++++   
Sbjct: 269 IHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRD--VVSWNIMLSAYV 326

Query: 211 KIGYLRKAVELFGMMP------------------------------------KKNVASWV 234
                + A++L+  M                                     +KNV    
Sbjct: 327 HNDRGKDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGN 386

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD----- 289
           +L+  + + G   +A  +F++M ++ ++SWT +I+ + +     +A  +F QML+     
Sbjct: 387 ALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNG 446

Query: 290 --AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
               V+ +    V+ L+ACA V ALE G  V    +        A+GTA+V++Y KCG I
Sbjct: 447 SSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEI 506

Query: 348 EAASLVF-GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           E    +F G     D+  W AMI   A  G+  +A++ F +M   G  PD   F++IL A
Sbjct: 507 EEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLA 566

Query: 407 CWYSGQVKLALNFFDSMRFDYF-IEPSVKHHTVVVNLLSRVGQ----------------- 448
           C ++G      ++F SM  +Y  +  +++H   V +LL R G+                 
Sbjct: 567 CSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDA 626

Query: 449 -----------DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                      + +  + ++    KLL+L+P+  + YV LSNIYA   +W  VA+VR  M
Sbjct: 627 VAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFM 686

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
             + +KK+ G S IE+  ++H F  G   H   +EI  +L  + +  +E GY+P T+ VL
Sbjct: 687 AEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVL 746

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H + E EKE  L  HSE+LA+A GLI T  GT +++ K L +C DCH+  K  SKI+ R+
Sbjct: 747 HFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRK 806

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           IV+RD TRFH FKDG CSC+DYW
Sbjct: 807 IVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 188/431 (43%), Gaps = 55/431 (12%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALS 84
           + N T   ++     + +  + R+IH+  + HNL   + I    I S   H  S   A +
Sbjct: 41  AENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCDSPGDAKA 100

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
            FD    +NL+ +  L+   A +   +  +     M +  VRP+ +T+     S      
Sbjct: 101 AFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPES 160

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G  +H ++V S +E D  V   L +MY + G    A +VF    +  ++ +V+ W++
Sbjct: 161 LRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVF---AKMERTRNVISWSI 217

Query: 205 LINGCSKIGYLRKAVELFGMM----PKKNVASWVSLI----------DG----------- 239
           +    +  G + +A+  F  M     K   ++ V+++          DG           
Sbjct: 218 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSG 277

Query: 240 --------------FMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAM 283
                         + R G +++A ++F+ M E  + VVSW  M++ +  N   + A+ +
Sbjct: 278 FESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQL 337

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           + +M    +RA+  T VS LSAC+    +  G  +H  I  ++      +G ALV MYAK
Sbjct: 338 YQRM---QLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAK 394

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-------YSGTEPD 396
           CG+   A  VF + +++ +++WT +I          +A   F++M+           +PD
Sbjct: 395 CGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPD 454

Query: 397 GTVFLAILTAC 407
              F+ IL AC
Sbjct: 455 ALAFVTILNAC 465



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIE 348
            VRA + T    L  CA+  AL  G ++H+    ++  L G   +G  +V MYA C +  
Sbjct: 38  AVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNL-LPGNLILGNHIVSMYAHCDSPG 96

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A   F   ++++L +WT ++   AI G+ ++ ++  ++M   G  PD   F+  L +C 
Sbjct: 97  DAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCG 156

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
               ++  +     M  D  +E   K    ++N+  + G
Sbjct: 157 DPESLRDGIRIH-QMVVDSRLEIDPKVSNALLNMYKKCG 194



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 61/304 (20%), Positives = 118/304 (38%), Gaps = 52/304 (17%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           ++ +T   ++S   S+      R +H QI+   L  +  +   L+S  +   S   A ++
Sbjct: 345 ADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAV 404

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-------VRPNRLTYPFVSKS 138
           FD    +++  +  +I               F  ML L        V+P+ L +  +  +
Sbjct: 405 FDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNA 464

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A +S L  G+ +       G+  D  V   + ++Y + G+     ++FD    +     
Sbjct: 465 CADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSR---PD 521

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLI----------------- 237
           V LWN +I   ++ G   +A++LF  M  + V     S+VS++                 
Sbjct: 522 VQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFT 581

Query: 238 --------------------DGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGE 276
                               D   R G LK+A E  E++P K   V+WT+++     + +
Sbjct: 582 SMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRD 641

Query: 277 AEKA 280
            ++A
Sbjct: 642 LKRA 645


>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
          Length = 1434

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 167/418 (39%), Positives = 245/418 (58%), Gaps = 35/418 (8%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +L+  +   G  + A +LFE M E+ +V+W ++ING++ NG   +AL +F +M   GV  
Sbjct: 35  TLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEP 94

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIEAASL 352
           + FT+VS LSACA++GAL  G R H Y+     GL G +  G AL+D+YAKCG+I  A  
Sbjct: 95  DGFTMVSLLSACAELGALALGRRAHVYMV--KVGLDGNLHAGNALLDLYAKCGSIRQAHK 152

Query: 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412
           VF E +EK +++WT++I GLA++G  ++A++ FK++   G  P    F+ +L AC + G 
Sbjct: 153 VFDEMEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGM 212

Query: 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN-------------- 458
           V    ++F  M+ +Y I P ++H+  +V+LL R G   Q ++  QN              
Sbjct: 213 VDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLL 272

Query: 459 --------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504
                         +  +LLQL+PKH   YVLLSN+YA+E RW DV +VR  M R  +KK
Sbjct: 273 GACTIHGHLALGEVARAQLLQLEPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKK 332

Query: 505 DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEE 561
            PG S +E+   +H F  G   H   +EI+ KL +I    + +GY+P    VL +I +EE
Sbjct: 333 TPGHSLVELRNRLHEFVMGDRSHPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEE 392

Query: 562 KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
           KE AL  HSEK+A+AF LI T  G  I++VK L +C DCH  +K  SK+  REIV+RD
Sbjct: 393 KETALSYHSEKIAIAFMLINTAAGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRD 450



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/284 (23%), Positives = 130/284 (45%), Gaps = 47/284 (16%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           + +++A L  +  G  +H + +++G E   FV+  L  MY   G    A K+F+   E+N
Sbjct: 1   MQRAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERN 60

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELF------GMMP---------------------- 226
               ++ WN +ING +  G   +A+ LF      G+ P                      
Sbjct: 61  ----LVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGR 116

Query: 227 -----------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275
                        N+ +  +L+D + + G +++A ++F++M EK VVSWT++I G + NG
Sbjct: 117 RAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNG 176

Query: 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG- 334
             ++AL +F ++   G+  ++ T V  L AC+  G ++ G      +   ++G+   I  
Sbjct: 177 FGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMK-EEYGIVPKIEH 235

Query: 335 -TALVDMYAKCGNIEAA-SLVFGETKEKDLLTWTAMIWGLAIHG 376
              +VD+  + G ++ A   +     + + + W  ++    IHG
Sbjct: 236 YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 279



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 113/270 (41%), Gaps = 50/270 (18%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           + A  +F+    +NL  +N +I G A N      ++ F  M    V P+  T   +  + 
Sbjct: 47  ESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSAC 106

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A L  L+LGR  H  +VK G++ +      L D+Y + G  R A KVFDE  EK    SV
Sbjct: 107 AELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK----SV 162

Query: 200 LLWNVLINGCSKIGYLRKAVELF------GMMPKK------------------------- 228
           + W  LI G +  G+ ++A+ELF      G+MP +                         
Sbjct: 163 VSWTSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKR 222

Query: 229 ---------NVASWVSLIDGFMRKGDLKKAGELFEQMP-EKGVVSWTAMINGFSQNGE-- 276
                     +  +  ++D   R G +K+A E  + MP +   V W  ++   + +G   
Sbjct: 223 MKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLA 282

Query: 277 -AEKALAMFFQMLDAGVRANDFTVVSALSA 305
             E A A   Q+      + D+ ++S L A
Sbjct: 283 LGEVARAQLLQLEPK--HSGDYVLLSNLYA 310



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 64/112 (57%)

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           A AK+  +  G +VH+    N F     +   LV MYA CG+ E+A  +F    E++L+T
Sbjct: 4   AIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVT 63

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
           W ++I G A++GR  +A+  F++M   G EPDG   +++L+AC   G + L 
Sbjct: 64  WNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALG 115


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 188/586 (32%), Positives = 301/586 (51%), Gaps = 82/586 (13%)

Query: 127 PNRLTYPFVSKSVASLSL--LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           P   ++ F +   A++ L  + LG+ +H  ++K+   ++ FV   L D Y +      A 
Sbjct: 206 PEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDAR 265

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-----------------K 227
           K+FDE PE++     + +NV+I+G +  G  + A +LF  +                   
Sbjct: 266 KLFDEMPEQDG----VSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 321

Query: 228 KNVASWV----------------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
            N   W                       SL+D + + G  ++A  +F  +  +  V WT
Sbjct: 322 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 381

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           AMI+ + Q G  E+ L +F +M  A V A+  T  S L A A + +L  G ++H++I  +
Sbjct: 382 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS 441

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
            F      G+AL+D+YAKCG+I+ A   F E  ++++++W AMI   A +G  E  ++ F
Sbjct: 442 GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSF 501

Query: 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445
           K+M+ SG +PD   FL +L+AC +SG V+  L  F+SM   Y ++P  +H+  VV++L R
Sbjct: 502 KEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCR 561

Query: 446 VGQDSQG-------------------------YQNSQ------NSFTKLLQLKPKHPSSY 474
            G+ ++                          ++N +      +    + +L+   P  Y
Sbjct: 562 SGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAP--Y 619

Query: 475 VLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIH 532
           V +SNIYAA G+W++V++V   M+ R +KK P +S++E+    H F A    H   +EI 
Sbjct: 620 VNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIR 679

Query: 533 SKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIV 591
            K++ +     E GY P T   LHN  E+ K E+L  HSE+LA+AF LI T  G+ I ++
Sbjct: 680 KKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVM 739

Query: 592 KKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K L  C DCH+ +K  SKI  REI +RD TRFH+F+DG CSC D+W
Sbjct: 740 KNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 164/367 (44%), Gaps = 16/367 (4%)

Query: 46  QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA 105
           Q RQ+  ++   N  +++ + +  + S +L +    A  +FD    +    + +LI G +
Sbjct: 65  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGE----ARKLFDGMVERTAVTWTILIGGYS 120

Query: 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF 165
           + + F+     FV M R    P+ +T+  +        + +    +   I+K G +    
Sbjct: 121 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 180

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY----LRKAVEL 221
           V   L D Y +  +   A ++F E PE    +S     VL   C+ IG     L + +  
Sbjct: 181 VGNTLVDSYCKSNRLDLACQLFKEMPE---IDSFTFAAVL---CANIGLDDIVLGQQIHS 234

Query: 222 FGMMPKK--NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK 279
           F +      NV    +L+D + +   +  A +LF++MPE+  VS+  +I+G++ +G+ + 
Sbjct: 235 FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY 294

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           A  +F ++         F   + LS  +     E G ++H          +  +G +LVD
Sbjct: 295 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVD 354

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYAKCG  E A ++F     +  + WTAMI      G YE+ +Q F KM  +    D   
Sbjct: 355 MYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQAT 414

Query: 400 FLAILTA 406
           F ++L A
Sbjct: 415 FASLLRA 421



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 169/377 (44%), Gaps = 49/377 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIH+ +I  N   +  ++  L+   S H S+  A  +FD    ++   +NV+I G A +
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD 289

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSK-SVASLSL-LSLGRGLHCLIVKSGVEYDAF 165
              +     F  +   +   +R  +PF +  S+AS +L   +GR +H   + +  + +  
Sbjct: 290 GKHKYAFDLFRELQFTAF--DRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEIL 347

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L DMY + GK   A  +F     +    S + W  +I+   + G+  + ++LF  M
Sbjct: 348 VGNSLVDMYAKCGKFEEAEMIFTNLTHR----SAVPWTAMISAYVQKGFYEEGLQLFNKM 403

Query: 226 PK---------------------------------------KNVASWVSLIDGFMRKGDL 246
            +                                        NV S  +L+D + + G +
Sbjct: 404 RQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSI 463

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           K A + F++MP++ +VSW AMI+ ++QNGEAE  L  F +M+ +G++ +  + +  LSAC
Sbjct: 464 KDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSAC 523

Query: 307 AKVGALEAGVRVHNYIS-CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLT 364
           +  G +E G+   N ++       +     ++VDM  + G    A  +  E   + D + 
Sbjct: 524 SHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIM 583

Query: 365 WTAMIWGLAIHGRYEQA 381
           W++++    IH   E A
Sbjct: 584 WSSVLNACRIHKNQELA 600



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 110/250 (44%), Gaps = 33/250 (13%)

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           K G L +A +LF  MP KN  S   +I G+++ G+L +A +LF+ M E+  V+WT +I G
Sbjct: 59  KNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGG 118

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
           +SQ  + ++A  +F QM   G   +  T V+ LS C          +V   I    +  +
Sbjct: 119 YSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSR 178

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM---------------------- 368
             +G  LVD Y K   ++ A  +F E  E D  T+ A+                      
Sbjct: 179 LIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIK 238

Query: 369 ---IWG-------LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418
              +W        L  + +++  I   +K+     E DG  +  I++   + G+ K A +
Sbjct: 239 TNFVWNVFVSNALLDFYSKHDSVIDA-RKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFD 297

Query: 419 FFDSMRFDYF 428
            F  ++F  F
Sbjct: 298 LFRELQFTAF 307



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/319 (22%), Positives = 141/319 (44%), Gaps = 43/319 (13%)

Query: 126 RPNRLTYPFVSKSVASLS----LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181
           RPN L       S+ASL      L++   +   IVK+G + D          +++ G+  
Sbjct: 5   RPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELS 64

Query: 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
            A ++F++ P KN   +    N++I+G  K G L +A +LF  M ++   +W  LI G+ 
Sbjct: 65  QARQLFEKMPHKNTVST----NMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYS 120

Query: 242 RKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA--- 294
           +    K+A ELF QM   G     V++  +++G + +    +   +  Q++  G  +   
Sbjct: 121 QLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLI 180

Query: 295 ----------------------------NDFTVVSALSACAKVGALEAGVRVHNYISCND 326
                                       + FT  + L A   +  +  G ++H+++   +
Sbjct: 181 VGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTN 240

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           F     +  AL+D Y+K  ++  A  +F E  E+D +++  +I G A  G+++ A   F+
Sbjct: 241 FVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFR 300

Query: 387 KMMYSGTEPDGTVFLAILT 405
           ++ ++  +     F  +L+
Sbjct: 301 ELQFTAFDRKQFPFATMLS 319



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/286 (22%), Positives = 124/286 (43%), Gaps = 52/286 (18%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQIHAQ I+    +   +   L+   +     + A  IF + T ++   +  +I    + 
Sbjct: 331 RQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQK 390

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             ++  +  F  M + SV  ++ T+  + ++ AS++ LSLG+ LH  I+KSG   + F  
Sbjct: 391 GFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSG 450

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI-----NG-------------- 208
             L D+Y + G  + A + F E P++N    ++ WN +I     NG              
Sbjct: 451 SALLDVYAKCGSIKDAVQTFQEMPDRN----IVSWNAMISAYAQNGEAEATLKSFKEMVL 506

Query: 209 ----------------CSKIGYLRKAV-------ELFGMMPKKNVASWVSLIDGFMRKGD 245
                           CS  G + + +       +++ + P++    + S++D   R G 
Sbjct: 507 SGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRRE--HYASVVDMLCRSGR 564

Query: 246 LKKAGELFEQMP-EKGVVSWTAMING--FSQNGE-AEKALAMFFQM 287
             +A +L  +MP +   + W++++N     +N E A +A    F M
Sbjct: 565 FNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNM 610


>gi|242061934|ref|XP_002452256.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
 gi|241932087|gb|EES05232.1| hypothetical protein SORBIDRAFT_04g022510 [Sorghum bicolor]
          Length = 590

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 174/472 (36%), Positives = 263/472 (55%), Gaps = 39/472 (8%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKK--NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           N L+     +G L  A  +F        +V SW +++ G+ + GDL+ A E+F +MPE+G
Sbjct: 120 NCLLKLYCALGMLPDARRVFDTSGATALDVVSWNTMVSGYGKCGDLEAAREVFVRMPERG 179

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW+AMI+   + GE  +AL +F QM   G + +   +VS L  CA +GALE G  VH 
Sbjct: 180 LVSWSAMIDACVRTGEFSEALRVFDQMTGNGFKPDAVVLVSVLKTCAHLGALERGRWVHR 239

Query: 321 YISCNDFGLKGA---IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           ++     G +     + TALVDMY KCG +  A  VF   +  D++ W AMI GLA++G 
Sbjct: 240 FLKAERLGGRPGNVMLETALVDMYCKCGCMNEAWWVFDGVQSHDVVLWNAMIGGLAMNGH 299

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            ++A++ F++M+  G  P+ + F+  L AC ++G+V    + F SMR D+ IEP  +H+ 
Sbjct: 300 GKRALELFRRMLDKGFVPNESTFVVALCACIHTGRVDEGEDVFRSMR-DHGIEPRREHYG 358

Query: 438 VVVNLLSRVG--QDSQG-----------------------YQN---SQNSFTKLLQLKPK 469
            + +LL R G  ++++G                       + N    +    KL++L+P 
Sbjct: 359 CLADLLGRAGLLEEAEGVLLDMPMEPHASQWGALMSSCLMHNNVGVGERVGKKLIELEPD 418

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKL 527
               YV L N+YA  G W+D   +R +M+ R  KK+ G S+IE NG VH F +G   H  
Sbjct: 419 DGGRYVALFNLYAVNGLWEDAKALRKMMEERGAKKETGLSFIEWNGLVHEFRSGDTRHPQ 478

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTTPG 585
            + I++ LED+    +  GY+  T  VL ++  +E+K   L  HSE+LALAFG++     
Sbjct: 479 TRLIYALLEDMEQRLQLIGYVKDTSQVLLDMDNEEDKGNTLSYHSERLALAFGILNIPHD 538

Query: 586 TTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             I+IVK L +C DCH   K  SK+ QREI++RD  RFH F+DG CSC D+W
Sbjct: 539 MPIRIVKNLRVCRDCHVHAKLVSKLYQREIIVRDRHRFHLFRDGVCSCNDFW 590


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 200/661 (30%), Positives = 338/661 (51%), Gaps = 76/661 (11%)

Query: 48  RQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           ++IHA ++  +  +S   +   LI+  +    +  A  I       ++  +N LI+G  +
Sbjct: 304 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 363

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           N  ++  +  F  M+    + + ++   +  +   LS L  G  LH  ++K G + +  V
Sbjct: 364 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQV 423

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L DMY +   T    + F    +K+    ++ W  +I G ++     +A+ELF  + 
Sbjct: 424 GNTLIDMYSKCNLTCYMGRAFLRMHDKD----LISWTTVIAGYAQNDCHVEALELFRDVA 479

Query: 227 KKNV------------ASWV--------------------------SLIDGFMRKGDLKK 248
           KK +            AS V                           L+D + +  ++  
Sbjct: 480 KKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGY 539

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A  +FE +  K VVSWT+MI+  + NG   +A+ +F +M++ G+ A+   ++  LSA A 
Sbjct: 540 ATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAAS 599

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
           + AL  G  +H Y+    F L+G+I  A+VDMYA CG++++A  VF   + K LL +T+M
Sbjct: 600 LSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSM 659

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I    +HG  + A++ F KM +    PD   FLA+L AC ++G +     F   M  +Y 
Sbjct: 660 INAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYE 719

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGYQ-----------------------NSQNSF----- 460
           +EP  +H+  +V++L R     + ++                       +S+        
Sbjct: 720 LEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAA 779

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
            +LL+L+PK+P + VL+SN++A +GRW DV +VR  M+   ++K PG S+IE++G VH+F
Sbjct: 780 QRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKF 839

Query: 521 EA--GGHKLAKEIHSKLEDIMAG-AREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALA 576
            A    H  +KEI+ KL ++     RE GY+  T++VLHN+ E EK + L  HSE++A+A
Sbjct: 840 TARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIA 899

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           +GL++T     ++I K L +C DCH+  K  SK+ +R+IV+RD  RFH+F+ G CSC D 
Sbjct: 900 YGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDS 959

Query: 636 W 636
           W
Sbjct: 960 W 960



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 181/416 (43%), Gaps = 44/416 (10%)

Query: 32  THIISLIHSSNSTKQLRQIHAQII-LHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
            +++ L     +  Q RQ+H++I      F    +  +L+       S+D A  +FD   
Sbjct: 84  AYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMP 143

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            +    +N +I     N    S ++ +  M    V     ++P + K+ A L  +  G  
Sbjct: 144 DRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSE 203

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           LH L+VK G     F+   L  MY +      A ++FD   EK  +   +LWN +++  S
Sbjct: 204 LHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDA---VLWNSILSSYS 260

Query: 211 KIGYLRKAVELFGMM----PKKN---VASWVSLIDGF----------------------- 240
             G   + +ELF  M    P  N   + S ++  DGF                       
Sbjct: 261 TSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL 320

Query: 241 ----------MRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290
                      R G + +A  +  QM    VV+W ++I G+ QN   ++AL  F  M+ A
Sbjct: 321 YVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAA 380

Query: 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350
           G ++++ ++ S ++A  ++  L AG+ +H Y+  + +     +G  L+DMY+KC      
Sbjct: 381 GHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYM 440

Query: 351 SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
              F    +KDL++WT +I G A +  + +A++ F+ +     E D  +  +IL A
Sbjct: 441 GRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRA 496



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 147/326 (45%), Gaps = 41/326 (12%)

Query: 122 RLSVRPNRL---TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMYVQL 177
           RL V  N      + +V +       +S GR LH  I K+   ++  F+   L  MY + 
Sbjct: 70  RLDVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKC 129

Query: 178 GKTRGAFKVFDETPEKNK-----------------SESVLLWNVLING------------ 208
           G    A KVFDE P++                   S   L WN+ + G            
Sbjct: 130 GSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALL 189

Query: 209 --CSKIGYLRKAVELFGMMPKKNVASW----VSLIDGFMRKGDLKKAGELFEQMPEKG-V 261
             C+K+  +R   EL  ++ K    S      +L+  + +  DL  A  LF+   EKG  
Sbjct: 190 KACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDA 249

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-N 320
           V W ++++ +S +G++ + L +F +M   G   N +T+VSAL+AC      + G  +H +
Sbjct: 250 VLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHAS 309

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            +  +    +  +  AL+ MY +CG +  A  +  +    D++TW ++I G   +  Y++
Sbjct: 310 VLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKE 369

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTA 406
           A+++F  M+ +G + D     +I+ A
Sbjct: 370 ALEFFSDMIAAGHKSDEVSMTSIIAA 395



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L+  + + G L  A ++F++MP++   +W  MI  +  NGE   ALA+++ M   GV   
Sbjct: 122 LVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLG 181

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             +  + L ACAK+  + +G  +H+ +    +   G I  ALV MYAK  ++ AA  +F 
Sbjct: 182 LSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 241

Query: 356 ETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
             +EK D + W +++   +  G+  + ++ F++M  +G  P+    ++ LTAC
Sbjct: 242 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTAC 294



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 285 FQMLDAGVRANDFTVVS---ALSACAKVGALEAGVRVHNYI--SCNDFGLKGAIGTALVD 339
           FQ LD  V  N+  V +    L  C K  A+  G ++H+ I  +   F L    G  LV 
Sbjct: 68  FQRLD--VSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGK-LVF 124

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY KCG+++ A  VF E  ++    W  MI     +G    A+  +  M   G     + 
Sbjct: 125 MYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSS 184

Query: 400 FLAILTAC 407
           F A+L AC
Sbjct: 185 FPALLKAC 192


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 201/683 (29%), Positives = 332/683 (48%), Gaps = 83/683 (12%)

Query: 35  ISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT- 90
           I+ + S    + LR   +IH  ++   L    +++  L++      S+ +A  +F     
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMER 121

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150
            +N+  ++++    A + +    + HF FML L ++  +     +  + +S +L+  GR 
Sbjct: 122 TRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRM 181

Query: 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS 210
           +H  I  SG E +  V   +  MY + G    A KVFD   E  +   V+ WN++++   
Sbjct: 182 IHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRD--VVSWNIMLSTYV 239

Query: 211 KIGYLRKAVELFGMMP------------------------------------KKNVASWV 234
                + A++L+  M                                     +KNV    
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGN 299

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD----- 289
           +L+  + + G   +A  +F++M ++ ++SWT +I+ + +     +A  +F QML+     
Sbjct: 300 ALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNG 359

Query: 290 --AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347
               V+ +    V+ L+ACA V ALE G  V    +        A+GTA+V++Y KCG I
Sbjct: 360 SSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEI 419

Query: 348 EAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           E A  +F     + D+  W AMI   A  G+  +A++ F +M   G  PD   F++IL A
Sbjct: 420 EEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLA 479

Query: 407 CWYSGQVKLALNFFDSMRFDYF-IEPSVKHHTVVVNLLSRVGQ----------------- 448
           C ++G      ++F SM  +Y  +  +++H   V +LL R G+                 
Sbjct: 480 CSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDA 539

Query: 449 -----------DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                      + +  + ++    KLL+L+P+  + YV LSNIYA   +W  VA+VR  M
Sbjct: 540 VAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFM 599

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
             + +KK+ G S IE+  ++H F  G   H   +EI  +L  + +  +E GY+P T+ VL
Sbjct: 600 AEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVL 659

Query: 556 HNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H + E EKE  L  HSE+LA+A GLI T  GT +++ K L +C DCH+  K  SKI+ R+
Sbjct: 660 HFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRK 719

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           IV+RD TRFH FKDG CSC+DYW
Sbjct: 720 IVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 90/374 (24%), Positives = 164/374 (43%), Gaps = 54/374 (14%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A + FD    +NL+ +  L+   A +   +  +     M +  VRP+ +T+     S   
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
              L  G  +H ++V S +E D  V   L +MY + G    A +VF    +  ++ +V+ 
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVF---AKMERTRNVIS 127

Query: 202 WNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLI----------DGFM------ 241
           W+++    +  G + +A+  F  M     K   ++ V+++          DG M      
Sbjct: 128 WSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSCIA 187

Query: 242 -------------------RKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKA 280
                              R G +++A ++F+ M E  + VVSW  M++ +  N   + A
Sbjct: 188 LSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDA 247

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           + ++ +M    +R +  T VS LSAC+    +  G  +H  I  ++      +G ALV M
Sbjct: 248 IQLYQRM---QLRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSM 304

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-------YSGT 393
           YAKCG+   A  VF + +++ +++WT +I          +A   F++M+           
Sbjct: 305 YAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRV 364

Query: 394 EPDGTVFLAILTAC 407
           +PD   F+ IL AC
Sbjct: 365 KPDALAFVTILNAC 378



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 126/261 (48%), Gaps = 10/261 (3%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           GD K A   F+ + ++ + SWT ++  F+ +G++++ L    +M   GVR +  T ++AL
Sbjct: 9   GDAKAA---FDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITAL 65

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDL 362
            +C    +L  G+R+H  +  +   +   +  AL++MY KCG++  A  VF +  + +++
Sbjct: 66  GSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNV 125

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++W+ M    A+HG   +A+++F+ M+  G +   +  + IL+AC     V+        
Sbjct: 126 ISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHSC 185

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482
           +    F E  +     V+ +  R G      + ++  F  + +      S  ++LS  Y 
Sbjct: 186 IALSGF-ESELLVANAVMTMYGRCG----AVEEARKVFDAMDEALRDVVSWNIMLST-YV 239

Query: 483 AEGRWKDVARVRTLMQRRSIK 503
              R KD  ++   MQ R  K
Sbjct: 240 HNDRGKDAIQLYQRMQLRPDK 260



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 62/303 (20%), Positives = 118/303 (38%), Gaps = 52/303 (17%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T   ++S   S+      R +H QI+   L  +  +   L+S  +   S   A ++F
Sbjct: 259 DKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVF 318

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-------VRPNRLTYPFVSKSV 139
           D    +++  +  +I               F  ML L        V+P+ L +  +  + 
Sbjct: 319 DKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNAC 378

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           A +S L  G+ +       G+  D  V   + ++Y + G+   A ++FD    +     V
Sbjct: 379 ADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSR---PDV 435

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLI------------------ 237
            LWN +I   ++ G   +A++LF  M  + V     S+VS++                  
Sbjct: 436 QLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFTS 495

Query: 238 -------------------DGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQNGEA 277
                              D   R G LK+A E  E++P K   V+WT+++     + + 
Sbjct: 496 MTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRDL 555

Query: 278 EKA 280
           ++A
Sbjct: 556 KRA 558



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 1/108 (0%)

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MYA C +   A   F   ++++L +WT ++   AI G+ ++ ++  ++M   G  PD   
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           F+  L +C     ++  +     M  D  +E   K    ++N+  + G
Sbjct: 61  FITALGSCGDPESLRDGIRIH-QMVVDSRLEIDPKVSNALLNMYKKCG 107


>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
          Length = 635

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 208/643 (32%), Positives = 310/643 (48%), Gaps = 101/643 (15%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISS------ASLHKSIDYALSIF--- 86
           +L+    +   + Q HA++ +  L A++R   QL+++      A+   S  Y L +F   
Sbjct: 31  ALLPPRPALYHVLQAHARLAVLGL-ATARALPQLLAALPRLTLAAADVSHSYPLLLFRCS 89

Query: 87  --------DHFT-----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP 133
                   +H       P  L +F  L R    N H       F F+L  S+  +  T P
Sbjct: 90  NCTSAFASNHLLRVLPHPLPLRLFPRLPR---RNPH------SFTFLLA-SLSNHLDTEP 139

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
             + S+AS  +   G  +H L VK+G   D +VR      Y   G      KVFDE P  
Sbjct: 140 AAAGSIASRFM---GTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIV 196

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
                                             ++V +W +++ G++R G +  A E+F
Sbjct: 197 ----------------------------------RDVVTWNAVLAGYVRAGMVGVAREVF 222

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           + MP +  VSW+ +I G+ + GE E AL +F  M+  GV+AN+  +V+ALSA A++G LE
Sbjct: 223 DGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTALSAAAQLGLLE 282

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            G  VH  +      +   +G AL+DMY+KCG++ AA  VF     +D+  W +MI GLA
Sbjct: 283 QGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLA 342

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            HG    A+Q F+K +  G  P    F+ +L AC  +G V     +F  M   Y IE  +
Sbjct: 343 THGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEM 402

Query: 434 KHHTVVVNLLSRVG--QDS----QGYQNSQNSF----------------------TKLLQ 465
           +H+  +V+LLSR G  Q++    +G +   +                         KL++
Sbjct: 403 EHYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIE 462

Query: 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-- 523
           L P H   YVLL++IYA   +W +V +VR LM  R   K  GWS +E +G VH+F  G  
Sbjct: 463 LDPAHDGYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDM 522

Query: 524 GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQT 582
            HK +  I++ L  I     E GY+P    VLH+I  EEK  A+  HSE+LA+A+G I  
Sbjct: 523 NHKDSARIYNMLCTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVV 582

Query: 583 TPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTRFHYF 625
             G+ I+IVK L++CGDCH   K  +K+  REIV+RD    Y 
Sbjct: 583 EAGSPIRIVKNLSVCGDCHEFSKMVTKVFGREIVVRDANDPYI 625


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 207/665 (31%), Positives = 330/665 (49%), Gaps = 81/665 (12%)

Query: 48   RQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
            +++HA +I + L      I   L++  +   +ID A SIF     K+   +N +I GL  
Sbjct: 374  QEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDH 433

Query: 107  NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
            N  F+  ++ F  M R  + P++ +      S ASL  + LG+ +H   +K G++ D  V
Sbjct: 434  NERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSV 493

Query: 167  RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING--CSKIGYLRKAVELFGM 224
               L  +Y +        KVF   PE ++    + WN  I     S+   L+       M
Sbjct: 494  SNALLTLYAETDCMEEYQKVFFLMPEYDQ----VSWNSFIGALATSEASVLQAIKYFLEM 549

Query: 225  MP---KKNVASWV-----------------------------------SLIDGFMRKGDL 246
            M    K N  +++                                   +L+  + +   +
Sbjct: 550  MQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQM 609

Query: 247  KKAGELFEQMPEK-GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
            +    +F +M E+   VSW AMI+G+  NG   KA+ + + M+  G R +DFT+ + LSA
Sbjct: 610  EDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSA 669

Query: 306  CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
            CA V  LE G+ VH          +  +G+ALVDMYAKCG I+ AS  F     +++ +W
Sbjct: 670  CASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSW 729

Query: 366  TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
             +MI G A HG   +A++ F +M   G  PD   F+ +L+AC + G V      F SM  
Sbjct: 730  NSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGE 789

Query: 426  DYFIEPSVKHHTVVVNLLSRVGQ------------------------------DSQGYQN 455
             Y + P ++H + +V+LL R G                               +S+  + 
Sbjct: 790  VYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTEL 849

Query: 456  SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
             + +   L++L+P +  +YVLLSN++AA G+W+DV   R  M+   +KK+ G S++ +  
Sbjct: 850  GRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKD 909

Query: 516  HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGC-HSEK 572
             VH F AG   H   ++I+ KL++IM   R+ GY+P T++ L++++ E +E L   HSEK
Sbjct: 910  GVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEK 969

Query: 573  LALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCS 631
            LA+AF L + +    I+I+K L +CGDCH+  KY S I  R+I+LRD+ RFH+F  G CS
Sbjct: 970  LAIAFVLTRQSE-LPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICS 1028

Query: 632  CRDYW 636
            C+DYW
Sbjct: 1029 CQDYW 1033



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/430 (24%), Positives = 179/430 (41%), Gaps = 60/430 (13%)

Query: 41  SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL 100
           S + +   Q+H QI    L +       L++      ++  A  +FD    KNL  ++ L
Sbjct: 52  SCTVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCL 111

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL--SLLSLGRGLHCLIVKS 158
           + G A+N         F  ++   + PN        ++   L  ++L LG  +H LI KS
Sbjct: 112 VSGYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKS 171

Query: 159 GVEYDAFVRVHLADMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
               D  +   L  MY     +   A +VF+E   K  +     WN +I+   + G    
Sbjct: 172 PYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSAS----WNSIISVYCRRGDAIS 227

Query: 218 AVELFGMMPK---------------------------------------------KNVAS 232
           A +LF  M +                                             K++  
Sbjct: 228 AFKLFSSMQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYV 287

Query: 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD-AG 291
             +L+ GF R G +  A  +FEQM ++  V+   ++ G ++  + E+A  +F +M D   
Sbjct: 288 GSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVE 347

Query: 292 VRANDFTVVSALSACAKVGALEAGVR----VHNYISCNDF-GLKGAIGTALVDMYAKCGN 346
           + A+ + V+  LSA  +   L+ G R    VH Y+  N    +   IG ALV++YAKC  
Sbjct: 348 INASSYAVL--LSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNA 405

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I+ A  +F     KD ++W ++I GL  + R+E+A+  F  M  +G  P     ++ L++
Sbjct: 406 IDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSS 465

Query: 407 CWYSGQVKLA 416
           C   G + L 
Sbjct: 466 CASLGWIMLG 475



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 175/417 (41%), Gaps = 63/417 (15%)

Query: 42  NSTKQLRQIHAQIILHNLFASSRITTQLISSASLH--KSIDYALSIFDHFTPKNLHIFNV 99
           N  K   +IH  +I  + +AS  + + ++ S   H   SID A  +F+    K    +N 
Sbjct: 156 NMLKLGMEIHG-LISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNS 214

Query: 100 LIRGLAENSHFQSCISHFVFMLR----LSVRPNRLTYPFVSKSVASLSLLSLGRGLH--- 152
           +I          S    F  M R    L+ RPN   Y F S    + SL+  G  L    
Sbjct: 215 IISVYCRRGDAISAFKLFSSMQREATELNCRPNE--YTFCSLVTVACSLVDCGLTLLEQM 272

Query: 153 -CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
              I KS    D +V   L   + + G    A  +F++  ++N     +  N L+ G ++
Sbjct: 273 LARIEKSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRN----AVTMNGLMVGLAR 328

Query: 212 IGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKK-------------------- 248
                +A ++F  M    + N +S+  L+  F    +LK+                    
Sbjct: 329 QHQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDV 388

Query: 249 --------------------AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                               A  +F+ MP K  VSW ++I+G   N   E+A+A F  M 
Sbjct: 389 WILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMR 448

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNY-ISCNDFGLKGAIGTALVDMYAKCGNI 347
             G+  + F+V+S LS+CA +G +  G ++H   I C    L  ++  AL+ +YA+   +
Sbjct: 449 RNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCG-LDLDVSVSNALLTLYAETDCM 507

Query: 348 EAASLVFGETKEKDLLTWTAMIWGLAI-HGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           E    VF    E D ++W + I  LA       QAI+YF +MM +G +P+   F+ I
Sbjct: 508 EEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINI 564



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/169 (23%), Positives = 81/169 (47%), Gaps = 9/169 (5%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LV+++ + GN+ +A  +F E  +K+L++W+ ++ G A +G  ++A   F+ ++ +G  P+
Sbjct: 80  LVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGIISAGLLPN 139

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN--LLSRVGQDSQGYQ 454
                + L AC   G   L L     M     I  S     +V++  L+S     S    
Sbjct: 140 HYAIGSALRACQELGPNMLKL----GMEIHGLISKSPYASDMVLSNVLMSMYSHCSASID 195

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503
           +++  F    ++K K  +S+  + ++Y   G      ++ + MQR + +
Sbjct: 196 DARRVFE---EIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATE 241



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 51/255 (20%), Positives = 101/255 (39%), Gaps = 14/255 (5%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           ++ T   ++S   S  + ++  ++HA  I   L A   + + L+   +    IDYA   F
Sbjct: 659 DDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFF 718

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           +    +N++ +N +I G A + H    +  F  M +    P+ +T+  V  + + + L+ 
Sbjct: 719 ELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVD 778

Query: 147 LGRGLHCLIVKSGVEYDAFVRV-HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            G          G  Y+   R+ H + M   LG+     K+ +       + + L+W  +
Sbjct: 779 EGFE---HFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTI 835

Query: 206 INGCSKIGYL-----RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +  C +         R+A ++   +   N  ++V L +     G  +   E    M    
Sbjct: 836 LGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAE 895

Query: 261 V-----VSWTAMING 270
           V      SW  M +G
Sbjct: 896 VKKEAGCSWVTMKDG 910


>gi|302824741|ref|XP_002994011.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
 gi|300138173|gb|EFJ04951.1| hypothetical protein SELMODRAFT_137997 [Selaginella moellendorffii]
          Length = 434

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 164/434 (37%), Positives = 242/434 (55%), Gaps = 33/434 (7%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           +I  + R G +  A   F+  P +   SW AMI G++QNG  + AL +F  M + G R +
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
             T V+A+ ACA + AL AG  +H+  +         I TA+V+MYAKCGN++ A++VF 
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
             + K+L++W+ MI     +G  ++A+  F  M   G  PD   F +IL+AC ++G  + 
Sbjct: 121 SIRNKNLISWSTMITAFVQNGHTDRALDAFLAMNVDGLFPDAVTFKSILSACSHAGLFEH 180

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DS---------- 450
               FD +  D+ I P++ H   +V+LL R G+               D           
Sbjct: 181 GFFHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTWNTLLAAC 240

Query: 451 ---QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
              +  +  + +   LL+L  + P  YVLLSNI+AA G   + A+VR LM+ R ++K PG
Sbjct: 241 RVHKSVERGKRAAEVLLELTSEIPGYYVLLSNIHAAAGDHAEKAKVRDLMEARGVRKKPG 300

Query: 508 WSYIEVNGHVHRFEAG---GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKE 563
           WS IE+N   H F AG    H   ++I  +L+ +    +E GY+P T  VL  + E EKE
Sbjct: 301 WSTIEINDRFHEFTAGEKFQHPKKQQILEELKRLSVLMKEDGYVPDTTEVLRLVNEDEKE 360

Query: 564 EALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRF 622
             L  HSEKLA+A GLI T PGTT+++VK L +C DCHS  K+ SKI+ R+I++RD  RF
Sbjct: 361 SLLFFHSEKLAIACGLISTPPGTTLRVVKNLRVCSDCHSATKFISKITGRKIIVRDLNRF 420

Query: 623 HYFKDGTCSCRDYW 636
           H+ ++G CSC DYW
Sbjct: 421 HHTENGVCSCGDYW 434



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 69/332 (20%), Positives = 122/332 (36%), Gaps = 70/332 (21%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           +I++ + H  + +A + FD    +N   +N +I G A+N H ++ +  F  M     R +
Sbjct: 1   MIAAYARHGRMIHAKTTFDAAPRRNSSSWNAMIAGYAQNGHCKAALHLFRAMNNEGQRCD 60

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            +T+     + A LS L  GR LH +   +G+     +   + +MY + G    A  VF 
Sbjct: 61  MVTFVAAIDACAGLSALVAGRSLHSIAAAAGLVAHVEISTAIVNMYAKCGNLDDATIVFS 120

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
               KN                                   + SW ++I  F++ G   +
Sbjct: 121 SIRNKN-----------------------------------LISWSTMITAFVQNGHTDR 145

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A + F  M   G+                                 +  T  S LSAC+ 
Sbjct: 146 ALDAFLAMNVDGLFP-------------------------------DAVTFKSILSACSH 174

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGN-IEAASLVFGETKEKDLLTW 365
            G  E G   H  +  +DFG+   +     +VD+  + G  +EA  LV       D +TW
Sbjct: 175 AGLFEHGF-FHFDLLVHDFGITPTMDHFKCMVDLLGRSGRLLEAEELVQTMPFVPDDVTW 233

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
             ++    +H   E+  +  + ++   +E  G
Sbjct: 234 NTLLAACRVHKSVERGKRAAEVLLELTSEIPG 265


>gi|297805646|ref|XP_002870707.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316543|gb|EFH46966.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 170/469 (36%), Positives = 262/469 (55%), Gaps = 37/469 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFM----RKGDLKKAGELFEQMPEKG 260
           +I+ C   G   + V + G++ K  V   V +++  M    + GDL  + +LFE +  K 
Sbjct: 49  MISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKN 108

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +VSW  MI    QNG AE+ LA F      G++ +  T ++ L  C  +G +     +H 
Sbjct: 109 LVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHG 168

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
            I    F     I TAL+D+YAK G +E +S VF E    D + WTAM+   A HG    
Sbjct: 169 LIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRD 228

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           AI++F+ M++ G  PD   F  +L AC +SG V+    +F++M   Y IEP + H++ +V
Sbjct: 229 AIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMV 288

Query: 441 NLLSRVG--QDSQG-----------------------YQNSQ---NSFTKLLQLKPKHPS 472
           +L+ R G  QD+ G                       Y+++Q    +  +L +L+P+   
Sbjct: 289 DLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGR 348

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           +Y++LSNIY+A G WKD +R+R LM+++ + +  G+SYIE    +H+F  G   H  +++
Sbjct: 349 NYIMLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEK 408

Query: 531 IHSKLEDIMAGAR-EQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTI 588
           I  KL++I    + E G+   TE+VLH++ E+ KEE +  HSEK+A+AFGL+  +P   I
Sbjct: 409 IQKKLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPI 468

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            I K L ICGDCH   K  S I +R I++RD+ RFH+F +G+CSCRDYW
Sbjct: 469 IIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 517



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/252 (25%), Positives = 123/252 (48%), Gaps = 10/252 (3%)

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQML--DAGVRANDFTVVSALSACAKVGALE 313
           MPE+ +V+W ++I+G++  G   K   +  +M+  + G R N+ T +S +SAC   G  E
Sbjct: 1   MPERDLVAWNSLISGYAGRGYLGKCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKE 60

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
            GV +H  +  +    +  +  AL+++Y K G++ ++  +F +   K+L++W  MI    
Sbjct: 61  EGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHL 120

Query: 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433
            +G  E+ + YF    + G +PD   FLA+L  C   G V+L+      + F  F   + 
Sbjct: 121 QNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGF-NANT 179

Query: 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
              T +++L +++G+        ++S T  L++      ++  +   YA  G  +D  + 
Sbjct: 180 CITTALLDLYAKLGR-------LEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKH 232

Query: 494 RTLMQRRSIKKD 505
             LM    +  D
Sbjct: 233 FELMVHYGLSPD 244



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/271 (18%), Positives = 122/271 (45%), Gaps = 15/271 (5%)

Query: 27  NNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           N +T   +IS  +H  N  + +  IH  ++   +    ++   L++       +  +  +
Sbjct: 42  NEVTFLSMISACVHGGNKEEGV-CIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKL 100

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           F+  + KNL  +N +I    +N   +  +++F     + ++P++ T+  V +    + ++
Sbjct: 101 FEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYFNMSRWVGLKPDQATFLAVLRVCEDIGVV 160

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
            L +G+H LI+  G   +  +   L D+Y +LG+   +  VF E      S   + W  +
Sbjct: 161 RLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT----SPDSMAWTAM 216

Query: 206 INGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           +   +  GY R A++ F +M    ++    ++  L++     G +++    FE M ++  
Sbjct: 217 LAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYR 276

Query: 262 VS-----WTAMINGFSQNGEAEKALAMFFQM 287
           +      ++ M++   ++G  + A  +  +M
Sbjct: 277 IEPRLDHYSCMVDLMGRSGLLQDAYGLIKEM 307


>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
           [Vitis vinifera]
          Length = 594

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 181/547 (33%), Positives = 284/547 (51%), Gaps = 65/547 (11%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL 94
           IS +H  +S  Q++QIHAQ++  NL   S +  +LI++ SL + +  A+++F+     ++
Sbjct: 21  ISDLHRCSSLNQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDV 80

Query: 95  HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154
            ++N LIR    NS      S F  M    V  +  TYPF+ K+ +    + +   +H  
Sbjct: 81  LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140

Query: 155 IVKSGVEYDAFVRVHLADMYVQLG--KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           + K G   D FV   L D Y + G      A KVF+   E++     + WN +I G  K+
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERD----TVSWNSMIGGLVKV 196

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G L +A  LF  MP+++  SW +++DG+++ G++  A ELFE+MP + VVSW+ M+ G+S
Sbjct: 197 GELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYS 256

Query: 273 QNGE--------------------------AEKALA-----MFFQMLDAGVRANDFTVVS 301
           + G+                          AEK LA     ++ QM +AG++ +D TV+S
Sbjct: 257 KAGDMDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVIS 316

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            LSACA  G L  G RVH  I    F     +  AL+DMYAKCG++E A  +F     KD
Sbjct: 317 ILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKD 376

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421
           +++W A+I GLA+HG  E+A+Q F +M   G  PD   F+ +L AC ++G V   L++F 
Sbjct: 377 VVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFH 436

Query: 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ--------------------------- 454
           +M  DY + P V+H+  +V+LL R G+  + ++                           
Sbjct: 437 AMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSAT 496

Query: 455 -NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
             ++  F +L++ +     +  +LSNIYAA G W + A +R  M+  SI+K  G S IEV
Sbjct: 497 GLAEEVFDRLVKSELSDSGNLSMLSNIYAAAGDWDNFANIRLRMKSTSIQKPSGGSSIEV 556

Query: 514 NGHVHRF 520
           +  VH F
Sbjct: 557 DDEVHEF 563


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 289/560 (51%), Gaps = 76/560 (13%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H  ++ +      F+   L  MYV+ G    A  V D  PE+    SV+ W  +I+
Sbjct: 29  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER----SVVSWTTMIS 84

Query: 208 GCSKIGYLRKAVELF------GMMPKKNVASWV--------------------------- 234
           G S+     +A++LF      G +P +   + V                           
Sbjct: 85  GYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFES 144

Query: 235 ------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 SL+D + +  ++++A  +F+ +PE+ VVS TA+I+G++Q G  E+AL +F Q+ 
Sbjct: 145 HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLY 204

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G++ N  T  + ++A + + +L+ G +VH  I   +     A+  +L+DMY+KCG + 
Sbjct: 205 SEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLL 264

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            +  VF    E+ +++W AM+ G   HG   + I  FK  ++   +PD    LA+L+ C 
Sbjct: 265 YSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCS 323

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------- 459
           + G V   L+ FD++  +        H+  +++LL R G+  +     +N          
Sbjct: 324 HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 383

Query: 460 -------------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                                KLL+++P++  +YV+LSNIYAA G WKDV +VR LM  +
Sbjct: 384 GSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEK 443

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           ++ K+PG S+I ++  +H F +    H   K+I++K+++I    +  G++P    VLH++
Sbjct: 444 TVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDV 503

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            +E KE  L  HSEKLA+ FGL+ T PG TI+++K L IC DCH+  K+ SK+ +REI L
Sbjct: 504 DDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISL 563

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH    G C+C DYW
Sbjct: 564 RDKNRFHLLTHGNCTCGDYW 583



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 168/371 (45%), Gaps = 48/371 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+HA++I      +  + T+L++      ++D A ++ D    +++  +  +I G ++ 
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 89

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F+ MLR    PN  T   V  S +    +  G+ +H L+VK+  E   FV 
Sbjct: 90  ERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVG 149

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY +    + A +VFD  PE++    V+    +I+G ++ G   +A++LF     
Sbjct: 150 SSLLDMYAKSENIQEARRVFDTLPERD----VVSCTAIISGYAQKGLDEEALDLFRQLYS 205

Query: 223 ------------------------------GMMPKKNVASWV----SLIDGFMRKGDLKK 248
                                          ++ +K +  +V    SLID + + G L  
Sbjct: 206 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY 265

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           +  +F+ M E+ VVSW AM+ G+ ++G   + +++ F+ L   V+ +  T+++ LS C+ 
Sbjct: 266 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL-FKDLHKEVKPDSVTLLAVLSGCSH 324

Query: 309 VGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAA-SLVFGETKEKDLLTW 365
            G ++ G+ + + +      L   G  G  ++D+  + G +E A +L+     E     W
Sbjct: 325 GGLVDEGLDIFDTVVKEQSALLHTGHYG-CIIDLLGRSGRLEKALNLIENMPFESTPSIW 383

Query: 366 TAMIWGLAIHG 376
            +++    +H 
Sbjct: 384 GSLLGACRVHA 394



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 126/269 (46%), Gaps = 12/269 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   +++      S  Q +Q+H+ ++  N  +   + + L+   +  ++I  A  +F
Sbjct: 110 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVF 169

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++     +I G A+    +  +  F  +    ++ N +T+  +  +++ L+ L 
Sbjct: 170 DTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLD 229

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H LI++  + +   ++  L DMY + GK   + +VFD   E+    SV+ WN ++
Sbjct: 230 YGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER----SVVSWNAML 285

Query: 207 NGCSKIGYLRKAVELFGMMPKK---NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV- 262
            G  + G   + + LF  + K+   +  + ++++ G    G + +  ++F+ + ++    
Sbjct: 286 MGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL 345

Query: 263 ----SWTAMINGFSQNGEAEKALAMFFQM 287
                +  +I+   ++G  EKAL +   M
Sbjct: 346 LHTGHYGCIIDLLGRSGRLEKALNLIENM 374



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%)

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           +A++AC +  AL  G +VH  +    +     +GT LV MY +CG ++ A  V     E+
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +++WT MI G +   R+ +A+  F KM+ +G  P+      +LT+C
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSC 121


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 189/584 (32%), Positives = 292/584 (50%), Gaps = 82/584 (14%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
           P    Y  +  + A    L+  R +H  + +S +  DAF+   L  MY + G    A  V
Sbjct: 58  PTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHV 117

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------------------- 227
           FD+ P    S  V+ W  LI G ++  Y+    E  G++P                    
Sbjct: 118 FDKMP----SRDVVSWTYLIAGYAQ-NYM--PAEAIGLLPDMLRARFRPNGFTFTSLLKA 170

Query: 228 -----------------------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSW 264
                                  ++V    +L+D + R   +  A  +F+++  K  VSW
Sbjct: 171 TGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSW 230

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
            A+I GF++  + E  L  F +M   G  A  FT  S  SA A++GALE G  VH ++  
Sbjct: 231 NALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIK 290

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           +   L   +G  ++ MYAK G++  A  VF    ++DL+TW  M+  LA +G  ++A+ +
Sbjct: 291 SGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAH 350

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F+++   G + +   FL++LTAC + G VK   ++FD M+ DY ++P + H+   V+LL 
Sbjct: 351 FEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMK-DYNVQPEIDHYVSFVDLLG 409

Query: 445 RVGQDSQG-------------------------YQNS---QNSFTKLLQLKPKHPSSYVL 476
           R G   +                          ++N+   Q +   + +L P      VL
Sbjct: 410 RAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVL 469

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSK 534
           L NIYA+ G+W D ARVR +M+   +KK+P  S++++   VH F A    H  + +I+  
Sbjct: 470 LYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRM 529

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKK 593
            E+I    ++ GY+P T  VL +I E E+E  L  HSEK+ALAF LI    G +I+I+K 
Sbjct: 530 WEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKN 589

Query: 594 LTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + ICGDCHS  KY SK+ +REIV+RDT RFH+F +G+CSC DYW
Sbjct: 590 IRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 162/393 (41%), Gaps = 50/393 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R IHA +    L   + +   LI       ++  A  +FD    +++  +  LI G A+N
Sbjct: 80  RAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQN 139

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 I     MLR   RPN  T+  + K+  +    S+G  +H L VK   + D +V 
Sbjct: 140 YMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVG 199

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L DMY +  +   A  VFD    KN+    + WN LI G ++       +  F  M +
Sbjct: 200 SALLDMYARCEQMDMAIMVFDRLVSKNE----VSWNALIAGFARKADGETTLMKFAEMQR 255

Query: 228 KNVA----SWVSLIDGFMRKGDLKK----------------------------------- 248
                   ++ S+   F R G L++                                   
Sbjct: 256 NGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVD 315

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A ++F++M ++ +V+W  M+   +Q G  ++A+A F ++   G++ N  T +S L+AC+ 
Sbjct: 316 ARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSH 375

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLTW 365
            G ++ G   H +    D+ ++  I    + VD+  + G + EA   VF    E     W
Sbjct: 376 GGLVKEG--KHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVW 433

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
            A++    +H   +   QY    ++   +PD T
Sbjct: 434 GALLGACRMHKNAKMG-QYAADHVFE-LDPDDT 464



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 124/277 (44%), Gaps = 13/277 (4%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           +++  +P N  T T ++    +        Q+HA  + +N      + + L+   +  + 
Sbjct: 153 LRARFRP-NGFTFTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQ 211

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A+ +FD    KN   +N LI G A  +  ++ +  F  M R        TY  +  +
Sbjct: 212 MDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSA 271

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A +  L  GR +H  ++KSG +  AFV   +  MY + G    A KVFD   +++    
Sbjct: 272 FARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRD---- 327

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFE 254
           ++ WN ++   ++ G  ++AV  F  + K     N  +++S++      G +K+    F+
Sbjct: 328 LVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD 387

Query: 255 QMPEKGVVS----WTAMINGFSQNGEAEKALAMFFQM 287
            M +  V      + + ++   + G  ++AL   F+M
Sbjct: 388 MMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKM 424



 Score = 38.9 bits (89), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 52/273 (19%), Positives = 109/273 (39%), Gaps = 20/273 (7%)

Query: 12  AIAPTTNIKSSHKPSNNITETH-----IISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           A   TT +K +    N    TH     + S      + +Q R +HA +I      ++ + 
Sbjct: 241 ADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG 300

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
             ++   +   S+  A  +FD    ++L  +N ++  LA+    +  ++HF  + +  ++
Sbjct: 301 NTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQ 360

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186
            N++T+  V  + +   L+  G+    ++    V+ +    V   D+  + G  + A   
Sbjct: 361 LNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIF 420

Query: 187 FDETPEKNKSESVLLWNVLINGC-----SKIGYLRKAVELFGMMPKKNVASWVSLIDGFM 241
             + P +    +  +W  L+  C     +K+G    A  +F + P  +    V L + + 
Sbjct: 421 VFKMPME---PTAAVWGALLGACRMHKNAKMGQY-AADHVFELDP-DDTGPPVLLYNIYA 475

Query: 242 RKGDLKKAGELFEQMPEKGV-----VSWTAMIN 269
             G    A  + + M   GV      SW  + N
Sbjct: 476 STGKWNDAARVRKMMKATGVKKEPACSWVQIEN 508


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  299 bits (765), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 194/660 (29%), Positives = 313/660 (47%), Gaps = 86/660 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + +HA +++  +  +  + T L+      +SI+ A+ +       ++ ++  +I G  ++
Sbjct: 236 KLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQS 295

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
             F+  I+ F  M    V PN  TY  +  + +S+  L LG+ +H  +V +G+E D  V 
Sbjct: 296 LKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDVSVG 355

Query: 168 VHLADMYVQLGK-TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM- 225
             L DMY++       A + F      N    V+ W  LI G S+ G   +++++FG M 
Sbjct: 356 NSLVDMYMKCSNMIEDAVRAFRGIASPN----VISWTSLIAGFSEHGLEEESIKVFGAMQ 411

Query: 226 --------------------------------------PKKNVASWVSLIDGFMRKGDLK 247
                                                    +V    +L+D +   G + 
Sbjct: 412 GVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVD 471

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +   M  + V+++T++    +Q G  E AL +   M    VR + F++ S LSA A
Sbjct: 472 DAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAA 531

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            +  +E G ++H Y   +  G   ++   LVD+Y KCG I  A   F E  E D ++W  
Sbjct: 532 GIPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNG 591

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           +I+GLA +G    A+  F+ M  +G EPD    L +L AC + G V + L++F SMR  +
Sbjct: 592 LIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKH 651

Query: 428 FIEPSVKHHTVVVNLLSRVGQ---------------DSQGYQN-------------SQNS 459
            I P + H+  +V+LL R G+               D+  Y+               ++ 
Sbjct: 652 GIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHM 711

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
             + L+L P  P+ YVLL+N+Y   GR +   + R +M+ R ++K+PG S++E    VH 
Sbjct: 712 ARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHL 771

Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAF 577
           F AG   H    +IH K+E ++A  R QG           I  ++  AL  HSEKLA+AF
Sbjct: 772 FTAGDTSHPQIGKIHEKIESLIAQFRNQG-----------IWYQENRALAHHSEKLAVAF 820

Query: 578 GLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           GLI T P   I+I+K + IC DCH  +   +++  REI++RD  RFH FK G CSCR YW
Sbjct: 821 GLISTPPKAPIRIIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 182/407 (44%), Gaps = 43/407 (10%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           +S S +    IH+ II         ++  L+S       +  A  +FD    +++  + +
Sbjct: 27  NSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTM 86

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           L+    +  + +  +  F  ML     PN  T     +S ++L   + G     L+ KSG
Sbjct: 87  LMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSG 146

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
            + +  +   L D Y + G T+ A++VF    E   +  ++ W ++++   + G   +A+
Sbjct: 147 FDSNPVLGSALIDFYSKCGCTQEAYRVF----EYMNNGDIVSWTMMVSSFVEAGSWSQAL 202

Query: 220 ELFGMMPKKNVAS-----------------------------W---------VSLIDGFM 241
           +L+  M +  VA                              W          +L+D + 
Sbjct: 203 QLYHRMIQTGVAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYC 262

Query: 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301
           +   ++ A ++ +   E  V  WTA+I+GF+Q+ +  +A+  F +M  +GV  N+FT   
Sbjct: 263 KCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSG 322

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN-IEAASLVFGETKEK 360
            L+AC+ + AL+ G ++H+ +         ++G +LVDMY KC N IE A   F      
Sbjct: 323 ILNACSSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASP 382

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++++WT++I G + HG  E++I+ F  M   G  P+      IL AC
Sbjct: 383 NVISWTSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 150/322 (46%), Gaps = 46/322 (14%)

Query: 127 PNRLTYPFVSKSVASLSLLSLGRGL--HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF 184
           P+++ Y  +   V+  +  S+  G+  H  I+K G + D F+  +L  +Y +      A 
Sbjct: 11  PSKIEYSLLKDIVSFCNSRSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEAR 70

Query: 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------PKK---------- 228
           ++FDE P ++    V  W +L++   KIG   +A+ELF  M      P +          
Sbjct: 71  QLFDEMPCRD----VASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSC 126

Query: 229 -----------------------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT 265
                                  N     +LID + + G  ++A  +FE M    +VSWT
Sbjct: 127 SALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWT 186

Query: 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
            M++ F + G   +AL ++ +M+  GV  N+FT V  L+A + +G L  G  VH ++   
Sbjct: 187 MMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG-LNYGKLVHAHLMMW 245

Query: 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              L   + TALVDMY KC +IE A  V   T E D+  WTA+I G     ++ +AI  F
Sbjct: 246 RIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAF 305

Query: 386 KKMMYSGTEPDGTVFLAILTAC 407
            +M  SG  P+   +  IL AC
Sbjct: 306 HEMETSGVVPNNFTYSGILNAC 327



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 94/166 (56%)

Query: 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305
           + +A +LF++MP + V SWT +++ + + G  E+AL +F  ML +G   N+FT+ +AL +
Sbjct: 66  VAEARQLFDEMPCRDVASWTMLMSAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRS 125

Query: 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           C+ +     G R    ++ + F     +G+AL+D Y+KCG  + A  VF      D+++W
Sbjct: 126 CSALREFNHGTRFQALVTKSGFDSNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSW 185

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
           T M+      G + QA+Q + +M+ +G  P+   F+ +L A  + G
Sbjct: 186 TMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVKLLAASSFLG 231



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 56/273 (20%), Positives = 105/273 (38%), Gaps = 44/273 (16%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N+ T + I+    +  S  Q R++H  II +N      +   L+ + +    +D A  + 
Sbjct: 418 NSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDDAWHVT 477

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                +++  +  L   + +  + +  ++    M +  VR +  +      + A + ++ 
Sbjct: 478 SMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAGIPIME 537

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ LHC  VKSG+     V   L D+Y + G    A + F E  E +     + WN LI
Sbjct: 538 TGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPD----AVSWNGLI 593

Query: 207 NGCSKIGYLRKAVELF------GMMP---------------------------------- 226
            G +  G++  A+  F      G+ P                                  
Sbjct: 594 FGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHGI 653

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
           +  +  +V L+D   R G L++A  + E MP K
Sbjct: 654 RPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFK 686


>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1329

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 287/549 (52%), Gaps = 37/549 (6%)

Query: 37   LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
            +I   ++ K L    A +I  +   +  +  Q I++ S    +D A+S        N+ +
Sbjct: 786  IIKQCSTPKLLESALAAMIKTSQTQNCYLMNQFITACSSFNRLDLAVSFMTQMQKPNVFV 845

Query: 97   FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
            +N LI+G    SH    +  +V MLR SV P+  TY  + ++ A  S    G  L   I 
Sbjct: 846  YNALIKGFVTCSHPIRSLEFYVRMLRDSVSPSSYTYSSLVQASAFAS--GFGESLQAHIW 903

Query: 157  KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
            K G  +   ++  L   Y   G+ R A KVFDE PE++     + W  +++   ++  + 
Sbjct: 904  KFGFGFHVQIQTTLIGFYSASGRIREARKVFDEMPERDD----VTWTTMVSAYRQVLDMD 959

Query: 217  KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
             A  L   MP+KN A+W  LIDG+ R G+L+ A  LF QMP K ++SWT MING+S+N  
Sbjct: 960  SANSLANQMPEKNEATWNCLIDGYTRLGNLELAESLFNQMPVKDIISWTTMINGYSRNKR 1019

Query: 277  AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
              +A+A+F++M++ G+  ++ T+ + +SACA +G LE G  VH Y   N F L   IG+A
Sbjct: 1020 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSA 1079

Query: 337  LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
            LVDMY+KCG++E A LVF    +K+L  W ++I GLA HG  ++A++ F KM     +P+
Sbjct: 1080 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1139

Query: 397  GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--------- 447
               F+++ TAC ++G V+     + SM  DY I  +V+H+  +V+L S+ G         
Sbjct: 1140 TVTFVSVFTACTHAGLVEEGRRIYRSMIDDYSIVSNVEHYGCMVHLFSKAGLIYEALELI 1199

Query: 448  -------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                               +  +  + ++ +F KL+ L+P +   Y LL ++YA + RW+
Sbjct: 1200 GSMEFEPNAVIWGALLDGCRIHKNLEIAEIAFNKLMILEPMNSGYYFLLVSMYAEQNRWR 1259

Query: 489  DVARVRTLMQRRSIKK-DPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
            DVA +R  M+   I+K  PG S I ++   H F A    H  + E+   L++I       
Sbjct: 1260 DVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYEQMGLA 1319

Query: 546  GYMPGTEWV 554
            GY+  TE V
Sbjct: 1320 GYVQETENV 1328


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 172/463 (37%), Positives = 258/463 (55%), Gaps = 37/463 (7%)

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
            C  +G  RK   +F  M  K+V SW S++  + R  D+  A E+F   P K +V+WTAM
Sbjct: 205 ACGDVGAARK---VFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVAWTAM 261

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           + G++QN    KAL  F QM  AG+  ++ ++  A+SACA++GA++    V      N  
Sbjct: 262 VTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIAERNGL 321

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
           G    +G+ LVDMYAKCG I+ A  VF    +K++ T+++MI GLA HGR    I  F  
Sbjct: 322 GRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFND 381

Query: 388 MMY-SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446
           M+  +  EP+   F+ +LTAC ++G VK    +F  M+  Y I PS  H+  +V+LL+R 
Sbjct: 382 MVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVDLLARS 441

Query: 447 GQDSQGY----------------------------QNSQNSFTKLLQLKPKHPSSYVLLS 478
           G  ++                              + ++ +   L +L+P+   +YVLLS
Sbjct: 442 GLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEPEGIGNYVLLS 501

Query: 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE-VNGHVHRFEAGG--HKLAKEIHSKL 535
           N  A+ G W +V+++R LM+ R +KKDP  S+ E  +G VH+F AG   H    EI  +L
Sbjct: 502 NTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQFFAGDNTHPSMHEIKKRL 561

Query: 536 EDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKL 594
            ++       GY+P    V++N+ +EEKE  L  HSEKLAL+FGL+     ++I+IVK L
Sbjct: 562 LELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALSFGLLTLESRSSIRIVKNL 621

Query: 595 TICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            IC DCH  ++  SK+   EI++RD  RFH+F+DG CSC  +W
Sbjct: 622 RICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGFW 664


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 202/647 (31%), Positives = 320/647 (49%), Gaps = 84/647 (12%)

Query: 69  LISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128
           LI++ + H  I  A  +FD     ++  +N LI   A+    +  +  F  +  L    +
Sbjct: 81  LINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFAEVRELRFGLD 140

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADM--YVQLGKTRGAFKV 186
             T   V   +A    + L R LHC +V  G  YD +  V+ A +  Y + G    A +V
Sbjct: 141 GFTLSGVI--IACGDDVGLVRQLHCFVVVCG--YDCYASVNNAVLACYSRKGFLNEARRV 196

Query: 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-------NVASWVS---- 235
           F E  E    + V  WN +I  C +     +AVELF  M ++        +AS ++    
Sbjct: 197 FREMGEGGGRDEVS-WNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTMASVLTAFTC 255

Query: 236 ---LIDGFMRKGDLKKAG--------------------------ELFEQMPEKGVVSWTA 266
              L+ G    G + K+G                          ++FE++    +V W  
Sbjct: 256 VKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNT 315

Query: 267 MINGFSQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN 325
           MI+GFSQ  + +E  +  F +M   G   +D + V   SAC+ + +   G +VH     +
Sbjct: 316 MISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKS 375

Query: 326 DFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
           D    + ++  ALV MY+KCGN+  A  VF    E ++++  +MI G A HG   ++++ 
Sbjct: 376 DIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRL 435

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F+ M+     P+   F+A+L+AC ++G+V+    +F+ M+  + IEP  +H++ +++LL 
Sbjct: 436 FELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLG 495

Query: 445 RVGQDSQG----------------------------YQNSQNSFTKLLQLKPKHPSSYVL 476
           R G+  +                              + +  +  + LQL+P + + YV+
Sbjct: 496 RAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPYNAAPYVM 555

Query: 477 LSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSK 534
           LSN+YA+  RW++ A V+ LM+ R +KK PG S+IE++  VH F  E   H + KEIH  
Sbjct: 556 LSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDTSHPMIKEIHVY 615

Query: 535 LEDIMAGAREQGYMPGTEWVLHNIKE----EKEEALGCHSEKLALAFGLIQTTPGTTIKI 590
           + +I+   ++ GY+P   W L   +E    EKE  L  HSEKLA+AFGLI T     I +
Sbjct: 616 MGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGLISTEEWVPILV 675

Query: 591 VKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           VK L ICGDCH+ +K  S I+ REI +RDT RFH FK+G CSC DYW
Sbjct: 676 VKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 144/294 (48%), Gaps = 15/294 (5%)

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTR 181
           L+  PN  +Y  +  + A  SL+ L R +   I +   V Y+  +       Y   G+ R
Sbjct: 69  LTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAA-----YADRGECR 123

Query: 182 GAFKVFDETPE-KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV--SLID 238
            A ++F E  E +   +   L  V+I     +G +R+ +  F ++   +  + V  +++ 
Sbjct: 124 PALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVRQ-LHCFVVVCGYDCYASVNNAVLA 182

Query: 239 GFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
            + RKG L +A  +F +M E G    VSW AMI    Q+ E  +A+ +F +M+  G++ +
Sbjct: 183 CYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVD 242

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-GNIEAASLVF 354
            FT+ S L+A   V  L  G++ H  +  + F     +G+ L+D+Y+KC G +     VF
Sbjct: 243 MFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVF 302

Query: 355 GETKEKDLLTWTAMIWGLAIHGRY-EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            E    DL+ W  MI G + +    E  I  F++M ++G  PD   F+ + +AC
Sbjct: 303 EEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSAC 356



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 101/201 (50%), Gaps = 7/201 (3%)

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
           SK G L  A   F +    NV S+ +LI+ + +   +  A ++F+++P+  +VS+  +I 
Sbjct: 55  SKCGSLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIA 114

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVHNYISCNDFG 328
            ++  GE   AL +F ++ +     + FT+   + AC   VG +    ++H ++    + 
Sbjct: 115 AYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACGDDVGLVR---QLHCFVVVCGYD 171

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385
              ++  A++  Y++ G +  A  VF E  E   +D ++W AMI     H    +A++ F
Sbjct: 172 CYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELF 231

Query: 386 KKMMYSGTEPDGTVFLAILTA 406
           ++M+  G + D     ++LTA
Sbjct: 232 REMVRRGLKVDMFTMASVLTA 252



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 147/335 (43%), Gaps = 22/335 (6%)

Query: 49  QIHAQIILHNLFASSRITTQLISSAS-LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           Q H  +I      +S + + LI   S     +     +F+     +L ++N +I G ++ 
Sbjct: 264 QFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQY 323

Query: 108 SHF-QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF- 165
               +  I  F  M      P+  ++  V+ + ++LS  S+G+ +H L +KS + Y+   
Sbjct: 324 EDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVS 383

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           V   L  MY + G    A +VFD  PE N    ++  N +I G ++ G   +++ LF +M
Sbjct: 384 VNNALVAMYSKCGNVHDARRVFDTMPEHN----MVSLNSMIAGYAQHGVEVESLRLFELM 439

Query: 226 PKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGE 276
            +K++A    ++++++   +  G +++  + F  M E+  +      ++ MI+   + G+
Sbjct: 440 LQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGK 499

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGT 335
            ++A  +   M             + L AC K G +E  V+  N ++    +    A   
Sbjct: 500 LKEAERIIETM---PFNPGSIEWATLLGACRKHGNVELAVKAANEFLQLEPY--NAAPYV 554

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            L +MYA     E A+ V    +E+ +       W
Sbjct: 555 MLSNMYASAARWEEAATVKRLMRERGVKKKPGCSW 589


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 188/632 (29%), Positives = 317/632 (50%), Gaps = 81/632 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N+  +  L+ G  +N +    +  F  M    V+PN  T+    K+   
Sbjct: 26  ACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPNDFTFSTNLKACGL 85

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L+ L +GR +H + VK+G +    V   + DMY + G+   A  +F+  P +N    ++ 
Sbjct: 86  LNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRN----LIS 141

Query: 202 WNVLINGCSKIGYLRKAVELF--------------------------------------- 222
           WN +I G +  G+  KA+ LF                                       
Sbjct: 142 WNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLI 201

Query: 223 --GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
             G +   N A   +LID +++ G L  A  +F  + EK V+SWTA+I G++Q G   ++
Sbjct: 202 TGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAES 261

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340
           + +F Q+ ++ ++ + F + S +   A    ++ G ++H +      G+  ++  +++DM
Sbjct: 262 MELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDM 321

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400
           Y KCG I  A  +F E   +++++WT MI G   HG  ++AI+ F +M    TEPD   +
Sbjct: 322 YLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTY 381

Query: 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--------DSQG 452
           LA+L  C +SG V+    +F  +   + I+  V+H+  +V+LL R G+        DS  
Sbjct: 382 LAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMP 441

Query: 453 YQNSQNSFTKLL--------------------QLKPKHPSSYVLLSNIYAAEGRWKDVAR 492
            + +   +  LL                    +L  ++P +YV++SNIYA  G WK+  R
Sbjct: 442 LEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYVMMSNIYADAGYWKECER 501

Query: 493 VRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQ-GYMP 549
           +R L++ + +KK+ G S++E++  VH F  G   H L ++IH  L+++    +E+ GY+ 
Sbjct: 502 IRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHEILKEMERRMKEELGYVY 561

Query: 550 GTEWVLHNIKEE-KEEALGCHSEKLALAFGLI---QTTPGTTIKIVKKLTICGDCHSLMK 605
           G ++ LH+++EE K + L  HSEKLA+   L+          I++ K L +CGDCH  +K
Sbjct: 562 GVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGRKVIRVFKNLRVCGDCHEFIK 621

Query: 606 YASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
             SKI +   V+RD  RFH F+DG CSCRDYW
Sbjct: 622 GLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 140/274 (51%), Gaps = 12/274 (4%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
            LI  + + G L  A ++F++M ++ VVSWTA++ G  QNG   ++L +F +M  +GV+ 
Sbjct: 12  DLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKP 71

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           NDFT  + L AC  +  L+ G ++H+      F +   +G +++DMY+KCG I  A+ +F
Sbjct: 72  NDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMF 131

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
                ++L++W AMI G  + G  E+A+  F+KM   G   D   F + L AC   G +K
Sbjct: 132 EVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIK 191

Query: 415 LALN---FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471
                  F  +  F Y +  +V     +++L  + G+       ++  F+    ++ KH 
Sbjct: 192 EGNQIHAFLITGGFLYSVNTAVA--GALIDLYVKCGK----LFMARRVFS---HIEEKHV 242

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
            S+  L   YA EG   +   +   ++  SI+ D
Sbjct: 243 ISWTALILGYAQEGNLAESMELFRQLRESSIQVD 276



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%)

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
           FG    +   L+ MY KCG +  A  VF    ++++++WTA++ G   +G   +++  F 
Sbjct: 3   FGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFS 62

Query: 387 KMMYSGTEPDGTVFLAILTAC 407
           KM  SG +P+   F   L AC
Sbjct: 63  KMGLSGVKPNDFTFSTNLKAC 83


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 173/522 (33%), Positives = 270/522 (51%), Gaps = 64/522 (12%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           E   ++ + +     +L++IHA I+  +L  S+ + T+++        +DYA  IF    
Sbjct: 7   ENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLE 66

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGR 149
             N+  +N +IR    N      I+ F  ML   S  P++ T+PFV KS A L    LG+
Sbjct: 67  NPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRLGQ 126

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H  + K G +  A     L DMY + G   G                           
Sbjct: 127 QVHAHVCKFGPKTHAITENALIDMYTKCGDMSG--------------------------- 159

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                   A +++  M +++  SW SLI G +R G +K A E+F++MP + +VSWT MIN
Sbjct: 160 --------AYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTMIN 211

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+++ G    AL +F +M   G+  ++ +V+S L ACA++GALE G  +H Y   + F  
Sbjct: 212 GYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHKYSEKSGFLK 271

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +  ALV+MYAKCG I+ A  +F +  EKD+++W+ MI GLA HG+   AI+ F+ M 
Sbjct: 272 NAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGKGYAAIRVFEDMQ 331

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ- 448
            +G  P+G  F+ +L+AC ++G     L +FD MR DY +EP ++H+  +V+LL R GQ 
Sbjct: 332 KAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLLGRSGQV 391

Query: 449 --------------DSQGYQNSQNS-------------FTKLLQLKPKHPSSYVLLSNIY 481
                         DS+ + +  +S               +LL+L+P+   +YVLL+NIY
Sbjct: 392 EQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEPEESGNYVLLANIY 451

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           A   +W+ V+ VR L++ + IKK PG S IEVN  V  F +G
Sbjct: 452 AKLDKWEGVSNVRKLIRSKRIKKTPGCSLIEVNNLVQEFVSG 493


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 177/513 (34%), Positives = 275/513 (53%), Gaps = 37/513 (7%)

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           E D  +   +A  Y +       F +F E  E +       +  L+  C+    L +  +
Sbjct: 93  EPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFPSLLKACAVAKALEEGRQ 152

Query: 221 LFGMMPK----KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           L  +  K     NV    +LI+ +    D+  A  +F+++ E  VV + AMI G+++   
Sbjct: 153 LHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVVCYNAMITGYARRNR 212

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
             +AL++F +M    ++ N+ T++S LS+CA +G+L+ G  +H Y   + F     + TA
Sbjct: 213 PNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTA 272

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           L+DM+AKCG+++ A  +F   + KD   W+AMI   A HG+ E ++  F++M     +PD
Sbjct: 273 LIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPD 332

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ-- 454
              FL +L AC ++G V+    +F  M  ++ I PS+KH+  +V+LL R G     Y+  
Sbjct: 333 EITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFI 392

Query: 455 -------------------NSQNSFT-------KLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                              +S N+         ++L+L   H   YV+LSN+YA   +W+
Sbjct: 393 DKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWE 452

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG-GHKLAK-EIHSKLEDIMAGAREQG 546
            V  +R +M+ R   K PG S IEVN  VH F +G G K A  ++H  L++++   +  G
Sbjct: 453 AVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAG 512

Query: 547 YMPGTEWVLHNI--KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           Y+P T  V+H     +EKE  L  HSEKLA+AFGL+ T PGTTI++VK L +C DCHS  
Sbjct: 513 YVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAA 572

Query: 605 KYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           K  S I  R++VLRD  RFH+F+DG CSCRD+W
Sbjct: 573 KLISLIFGRKVVLRDVQRFHHFEDGKCSCRDFW 605



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 73/350 (20%), Positives = 144/350 (41%), Gaps = 73/350 (20%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +N T   ++     + + ++ RQ+H   +   +  +  +   LI+  +  + +D A  +F
Sbjct: 130 DNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVF 189

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D      +  +N +I G A  +     +S F  M   +++PN +T   V  S A L  L 
Sbjct: 190 DRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLD 249

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           LG+ +H    K G  +  +V+V+ A                                 LI
Sbjct: 250 LGKWIHEYAKKHG--FCKYVKVNTA---------------------------------LI 274

Query: 207 NGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTA 266
           +  +K G L  AV +F  M  K+  +W ++I  +   G  + +  +FE+M          
Sbjct: 275 DMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMR--------- 325

Query: 267 MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326
                S+N                 V+ ++ T +  L+AC+  G +E G    +++  ++
Sbjct: 326 -----SEN-----------------VQPDEITFLGLLNACSHTGLVEEGREYFSWM-VHE 362

Query: 327 FGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           FG+  +I    ++VD+  + G++E A     E  +K  ++ T M+W + +
Sbjct: 363 FGIVPSIKHYGSMVDLLGRAGHLEDAY----EFIDKLPISPTPMLWRILL 408



 Score = 45.8 bits (107), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 91/210 (43%), Gaps = 14/210 (6%)

Query: 7   NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRIT 66
           NR   A++    ++  +   N IT   ++S      S    + IH     H      ++ 
Sbjct: 211 NRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVN 270

Query: 67  TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR 126
           T LI   +   S+D A+SIF++   K+   ++ +I   A +   ++ +  F  M   +V+
Sbjct: 271 TALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQ 330

Query: 127 PNRLTYPFVSKSVASLSLLSLGRG-----LHCL-IVKSGVEYDAFVRVHLADMYVQLGKT 180
           P+ +T+  +  + +   L+  GR      +H   IV S   Y + V     D+  + G  
Sbjct: 331 PDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYGSMV-----DLLGRAGHL 385

Query: 181 RGAFKVFDETPEKNKSESVLLWNVLINGCS 210
             A++  D+ P    S + +LW +L+  CS
Sbjct: 386 EDAYEFIDKLP---ISPTPMLWRILLAACS 412


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 180/625 (28%), Positives = 312/625 (49%), Gaps = 73/625 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           ++IH   I         +   LI      K ++ A  +FD    K++  +  +       
Sbjct: 97  KKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVSWTSMTYCYVNC 156

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  I  F  M    +R N LT   +  + A    + LGR +H  I+++ +E + +V 
Sbjct: 157 GMCRQGILLFREMGLNGIRANSLTVSSILPACADY--IKLGREVHGFILRNEMEGNVYVS 214

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L +MY                                   S +G L++A  +F  M  
Sbjct: 215 SALVNMYA----------------------------------SSLG-LKQARLVFDSMYH 239

Query: 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEKALAM 283
           +++ SW  ++  +    + ++   LF QM ++G+     SW A I+G  QNG+ E AL +
Sbjct: 240 RDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGI 299

Query: 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
             +M D+G++ N  T+VSAL  C  + +L  G  +H Y+  + F     I TALV +YAK
Sbjct: 300 LCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAK 359

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           CG++E +  VF     KD++ W  MI   ++HG+  +++  F KM+ SG EP+   F+ +
Sbjct: 360 CGDLELSRHVFNTMPRKDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGV 419

Query: 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----- 458
           L+ C +S      L  F+SM  ++ I P   H++ +V++LSR G+  + Y   +      
Sbjct: 420 LSGCSHSQLADEGLLVFNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEP 479

Query: 459 -----------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                                  + ++L +++P +  +YVLLSNI     +W + + +R 
Sbjct: 480 TAAAWGALLGACRVYKNVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRK 539

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
           +M+ + + K PG S+++V   V+ F  G   ++    I+  L++I    R  GY P T++
Sbjct: 540 MMRDKGLAKTPGRSWVQVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDF 599

Query: 554 VLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           VL N+ +E++EE L  HSE+LA+AFG++ ++  TT+++ K L ICGDCH+ +K  +KI  
Sbjct: 600 VLQNVDQEQREETLCSHSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVG 659

Query: 613 REIVLRDT-RFHYFKDGTCSCRDYW 636
            +I++RD+ RFH+F+DG C+C D+W
Sbjct: 660 MQIIVRDSLRFHHFRDGYCTCNDFW 684



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 94/174 (54%)

Query: 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
           + LI   +  GDLK+A  LF+++PE  + +WT +I+G +Q+G  +KA+ ++  +L   VR
Sbjct: 15  IKLIKTCLNSGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVR 74

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            + F ++S   ACA  G L    ++H+      F     +G AL+DM+ KC  +  A  V
Sbjct: 75  PDKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCV 134

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           F +   KD+++WT+M +     G   Q I  F++M  +G   +     +IL AC
Sbjct: 135 FDDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPAC 188



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 40/78 (51%)

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G+++ A  +F +  E DL TWT +I G   HG  ++AI  +  ++     PD  V L++ 
Sbjct: 25  GDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRPDKFVLLSVA 84

Query: 405 TACWYSGQVKLALNFFDS 422
            AC  SG + +A    D 
Sbjct: 85  KACAASGDLVVAKKIHDD 102


>gi|77548549|gb|ABA91346.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 624

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 246/443 (55%), Gaps = 41/443 (9%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ---------NGEAEKALAMFF 285
           +L+D F R G +    ++F+++    + +W A+++ +++         +  A+  L MF 
Sbjct: 182 ALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFV 241

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +ML   ++ N+ T+V+ + AC ++GA+  GV  H Y       +   + TALV+MYA CG
Sbjct: 242 RMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 301

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            ++ A  VF    ++D   + AM+ GLA+HG    A+  F +M   G   DG   L+++ 
Sbjct: 302 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMC 361

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQ----GYQNSQNS 459
           AC ++G V   L++FD M  ++ IEPS++H+  +V++LSR G+  D++    G     N+
Sbjct: 362 ACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNA 421

Query: 460 ----------------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                                   +L++L+P    ++VL+SN YA   RW D  + R  M
Sbjct: 422 AIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEM 481

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           +   I K PG S++++NG +H F  G   H  +KEI++ +EDI     E G+   T   L
Sbjct: 482 KSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSAL 541

Query: 556 HNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
            +++EE K +AL  HSE+LA+AF LI + PG  I+I+K L +C DCH   K  S++  RE
Sbjct: 542 FDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 601

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           IV+RD TRFH+F+DG CSC D+W
Sbjct: 602 IVMRDRTRFHHFRDGVCSCGDFW 624



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 25/249 (10%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAE---------NSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
           +FD     +L  +N L+   A          +S   + +  FV ML L+++PN +T   V
Sbjct: 199 VFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAV 258

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
             +   L  +S G   H   VK  +  +  V   L +MY   G+   A +VF    +++ 
Sbjct: 259 IGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDT 318

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
                 +N +++G +  G+ R A+ LF  M  + V     + +S++      G + +  +
Sbjct: 319 R----CYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLD 374

Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            F++M      E  +  +  M++  S+ G    A  +   M    +  N     S + AC
Sbjct: 375 YFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGM---PIVPNAAIYRSLIRAC 431

Query: 307 AKVGALEAG 315
              G LE G
Sbjct: 432 GIHGKLELG 440



 Score = 45.8 bits (107), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA-IHGR--------YEQAIQ 383
           +G AL+D++A+CG I +   VF      DL  W A++   A +  R         +  ++
Sbjct: 179 LGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILE 238

Query: 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
            F +M+    +P+    +A++ AC   G V
Sbjct: 239 MFVRMLSLAIKPNEITLVAVIGACGELGAV 268


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 195/631 (30%), Positives = 323/631 (51%), Gaps = 85/631 (13%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +F+    + + ++ ++I    +       +  F+ ML     P+  T   +  + A 
Sbjct: 202 ARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAE 261

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG---AFKVFDETPEKNKSES 198
                LG+ LH L+++ G+  D  V   L DMY +L   +    A KVF   P  N    
Sbjct: 262 QGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHN---- 317

Query: 199 VLLWNVLINGCSKIG-YLRKAVELFGMMPKKNVA----SWVSLIDG-------------- 239
           V+ W  LI+G  + G     AVEL   M  +++     ++ SL+                
Sbjct: 318 VMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIH 377

Query: 240 ---------------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                                +   G +++A + F+Q+ E+ ++S ++ I    + G + 
Sbjct: 378 ARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIG---ETGRSN 434

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
            + +   + +D GV  + FT  S LSA A VG    G ++H       F     I  +LV
Sbjct: 435 ASWSSQIESMDVGV--STFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNSLV 492

Query: 339 DMYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG 397
            MY++CG ++ A   F E ++  ++++WT++I  LA HG  E+A+  F  M+ SG +P+ 
Sbjct: 493 SMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPND 552

Query: 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--QDS----- 450
             ++A+L+AC + G VK    +F SM+ D+ + P ++H+  +V+LL+R G  Q++     
Sbjct: 553 VTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFIN 612

Query: 451 ------------------QGYQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489
                             + Y+N    + +   ++ L+P+ P+ YVLLSN+YA  G W +
Sbjct: 613 EMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGLWDE 672

Query: 490 VARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGY 547
           VAR+R+LM+ R++ K+ G S++ V   +H F AG   H  A+EI++KL  ++   ++ GY
Sbjct: 673 VARIRSLMRHRNLSKETGLSWMHVGNTIHEFRAGDTSHPRAQEIYAKLAVLIREIKDIGY 732

Query: 548 MPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
           +P T  VLH++ ++ KE+ L  HSEK+A+AFGLI T P   I+I K L +C DCHS +KY
Sbjct: 733 VPDTSIVLHDMSDKLKEQCLLQHSEKIAVAFGLITTLPTKPIRIFKNLRVCADCHSAIKY 792

Query: 607 ASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            SK + REI+LRD+ RFH  KDG CSC +YW
Sbjct: 793 ISKSTGREIILRDSNRFHRMKDGKCSCGEYW 823



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 165/364 (45%), Gaps = 52/364 (14%)

Query: 147 LGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETP-------------- 191
           LGR LH  ++ + V + DA V   L  MY + G  R A +VFD                 
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 192 -EKNKSES---VLLWNVLINGCSKIGYLRKAV-------ELF--------GMMPKK---- 228
             +N +E    VLL  +L +G     +   A        ELF        G   K     
Sbjct: 121 LTRNGAEQEALVLLGEMLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWG 180

Query: 229 -NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
            +V+   +LID F R GDL  A ++F  + E+ VV WT MI  + Q G A KA+ +F  M
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM 240

Query: 288 LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC--- 344
           L+ G   + +T+ S +SACA+ G+   G ++H+ +          +   LVDMY K    
Sbjct: 241 LEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQME 300

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWG-LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
            ++E A  VF      ++++WTA+I G +   G+   A++   +M+    EP+   + ++
Sbjct: 301 QSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSL 360

Query: 404 LTACWYSGQVKLALNFFDSMR--FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461
           L AC         L+  DS R      ++ S+ +  VV N L  +  +S   + ++ +F 
Sbjct: 361 LKAC-------ANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFD 413

Query: 462 KLLQ 465
           +L +
Sbjct: 414 QLYE 417



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 65/299 (21%), Positives = 134/299 (44%), Gaps = 22/299 (7%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N++T + ++    + +     RQIHA+++  ++   + +   L+S  +    ++ A   F
Sbjct: 353 NHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAF 412

Query: 87  DHFTPKNLHIFNVLIRGLAE-NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           D    +NL   +  I      N+ + S I        + V  +  T+  +  + A++ L 
Sbjct: 413 DQLYERNLLSTSSDIGETGRSNASWSSQIE------SMDVGVSTFTFASLLSAAATVGLP 466

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           + G+ LH L +K+G E D  +   L  MY + G    A + FDE  + +   +V+ W  +
Sbjct: 467 TKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDH---NVISWTSI 523

Query: 206 INGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-- 259
           I+  +K G+  +A+ LF  M     K N  ++++++      G +K+  E F  M +   
Sbjct: 524 ISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHR 583

Query: 260 ---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
               +  +  M++  +++G  ++AL    +M     +A+     + L AC     +E G
Sbjct: 584 LIPRMEHYACMVDLLARSGLVQEALEFINEM---PCKADALVWKTLLGACRTYENIEIG 639


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 175/560 (31%), Positives = 289/560 (51%), Gaps = 76/560 (13%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           GR +H  ++ +      F+   L  MYV+ G    A  V D  PE+    SV+ W  +I+
Sbjct: 61  GRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER----SVVSWTTMIS 116

Query: 208 GCSKIGYLRKAVELF------GMMPKKNVASWV--------------------------- 234
           G S+     +A++LF      G +P +   + V                           
Sbjct: 117 GYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFES 176

Query: 235 ------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 SL+D + +  ++++A  +F+ +PE+ VVS TA+I+G++Q G  E+AL +F Q+ 
Sbjct: 177 HMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLY 236

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G++ N  T  + ++A + + +L+ G +VH  I   +     A+  +L+DMY+KCG + 
Sbjct: 237 SEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLL 296

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            +  VF    E+ +++W AM+ G   HG   + I  FK  ++   +PD    LA+L+ C 
Sbjct: 297 YSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKD-LHKEVKPDSVTLLAVLSGCS 355

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS--------- 459
           + G V   L+ FD++  +        H+  +++LL R G+  +     +N          
Sbjct: 356 HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIW 415

Query: 460 -------------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                                KLL+++P++  +YV+LSNIYAA G WKDV +VR LM  +
Sbjct: 416 GSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEK 475

Query: 501 SIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           ++ K+PG S+I ++  +H F +    H   K+I++K+++I    +  G++P    VLH++
Sbjct: 476 TVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDV 535

Query: 559 -KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
             E+KE  L  HSEKLA+ FGL+ T PG TI+++K L IC DCH+  K+ SK+ +REI L
Sbjct: 536 DDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISL 595

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH    G C+C DYW
Sbjct: 596 RDKNRFHLLTHGNCTCGDYW 615



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 168/371 (45%), Gaps = 48/371 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+HA++I      +  + T+L++      ++D A ++ D    +++  +  +I G ++ 
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 121

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F+ MLR    PN  T   V  S +    +  G+ +H L+VK+  E   FV 
Sbjct: 122 ERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVG 181

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY +    + A +VFD  PE++    V+    +I+G ++ G   +A++LF     
Sbjct: 182 SSLLDMYAKSENIQEARRVFDTLPERD----VVSCTAIISGYAQKGLDEEALDLFRQLYS 237

Query: 223 ------------------------------GMMPKKNVASWV----SLIDGFMRKGDLKK 248
                                          ++ +K +  +V    SLID + + G L  
Sbjct: 238 EGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLY 297

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           +  +F+ M E+ VVSW AM+ G+ ++G   + +++ F+ L   V+ +  T+++ LS C+ 
Sbjct: 298 SRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL-FKDLHKEVKPDSVTLLAVLSGCSH 356

Query: 309 VGALEAGVRVHNYISCNDFGL--KGAIGTALVDMYAKCGNIEAA-SLVFGETKEKDLLTW 365
            G ++ G+ + + +      L   G  G  ++D+  + G +E A +L+     E     W
Sbjct: 357 GGLVDEGLDIFDTVVKEQSALLHTGHYG-CIIDLLGRSGRLEKALNLIENMPFESTPSIW 415

Query: 366 TAMIWGLAIHG 376
            +++    +H 
Sbjct: 416 GSLLGACRVHA 426



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/269 (19%), Positives = 126/269 (46%), Gaps = 12/269 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N  T   +++      S  Q +Q+H+ ++  N  +   + + L+   +  ++I  A  +F
Sbjct: 142 NEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVF 201

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    +++     +I G A+    +  +  F  +    ++ N +T+  +  +++ L+ L 
Sbjct: 202 DTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLD 261

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            G+ +H LI++  + +   ++  L DMY + GK   + +VFD   E+    SV+ WN ++
Sbjct: 262 YGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLER----SVVSWNAML 317

Query: 207 NGCSKIGYLRKAVELFGMMPKK---NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV- 262
            G  + G   + + LF  + K+   +  + ++++ G    G + +  ++F+ + ++    
Sbjct: 318 MGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSAL 377

Query: 263 ----SWTAMINGFSQNGEAEKALAMFFQM 287
                +  +I+   ++G  EKAL +   M
Sbjct: 378 LHTGHYGCIIDLLGRSGRLEKALNLIENM 406



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%)

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           +A++AC +  AL  G +VH  +    +     +GT LV MY +CG ++ A  V     E+
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +++WT MI G +   R+ +A+  F KM+ +G  P+      +LT+C
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSC 153


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 186/618 (30%), Positives = 301/618 (48%), Gaps = 111/618 (17%)

Query: 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY----------- 174
           RP+++ +     + A+   L  GR +H  +V SG+  +  +   L +MY           
Sbjct: 7   RPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEK 66

Query: 175 --------------------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
                                Q G    A  VF+  P K+     + WN +IN       
Sbjct: 67  VFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDD----VSWNAVINASVGNSK 122

Query: 215 LRKAVELFGMMP----KKNVASWVSLIDG------------------------------- 239
            + A+ELF  M     + N  + +SL++                                
Sbjct: 123 FQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGN 182

Query: 240 -----FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ--NGEAEKALAMFFQMLDAGV 292
                + R G L    + F+ + EKG+V+W+ M+  ++Q  +G   +A   F +M   G+
Sbjct: 183 SVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGI 242

Query: 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG-AIGTALVDMYAKCGNIEAAS 351
           +  + T VSAL ACA +  LE G  +H   + + F      +G  +++MY KCG+   A 
Sbjct: 243 KPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAK 302

Query: 352 LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
           LVF +  EK L++W ++I   A +G   +A+   ++M+  G +PD    ++IL    ++G
Sbjct: 303 LVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAG 362

Query: 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------------------------ 447
            ++  +  F S   D+ +EPS      +V+LL+R G                        
Sbjct: 363 LLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMT 422

Query: 448 --QDSQGYQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502
                + Y + Q       ++ +L+P+H  S+V+L+N+YA+ GRW D +R+R +M+R S+
Sbjct: 423 LLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSV 482

Query: 503 KKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE 560
           KK+PG S+IE++G VH F +G   H   +EI  +LE +    RE GY+P T  V+H+++E
Sbjct: 483 KKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDVEE 542

Query: 561 -EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619
            +KEE L  HSE+LA+ FGL+ T PG TI++VK L +C DCH+  K  S +  REIV+RD
Sbjct: 543 GDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRD 602

Query: 620 -TRFHYFKDGTCSCRDYW 636
            +RFH+FK G CSC D+W
Sbjct: 603 SSRFHHFKHGQCSCGDFW 620



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 159/373 (42%), Gaps = 53/373 (14%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           AL +F+    K+   +N +I     NS FQ  +  F  M    +R N  T   + ++   
Sbjct: 95  ALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGG 154

Query: 142 LSLLSLGRGLHCLIVKSGVEYDA-FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           L  L L R +H      G   ++  V   + +MY + G      K FD   EK     ++
Sbjct: 155 LEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKG----LV 210

Query: 201 LWNVLINGC--SKIGYLRKAVELFGMMPKKNV----ASWVSLID---------------- 238
            W++++     SK G  R+A + F  M  + +     ++VS +D                
Sbjct: 211 AWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHR 270

Query: 239 -----GFM---------------RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                GF+               + G    A  +F+QMPEK ++SW ++I  ++ NG A 
Sbjct: 271 RAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHAL 330

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT--A 336
           +AL+   +ML  G   +  T VS L   +  G LE GV  H   S  D GL+ + G    
Sbjct: 331 EALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVE-HFRSSIQDHGLEPSSGQLKC 389

Query: 337 LVDMYAKCGNIEAAS--LVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
           LVD+ A+ G ++AA   ++     + D + W  ++     +G  ++ I+  +++     +
Sbjct: 390 LVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQ 449

Query: 395 PDGT-VFLAILTA 406
             G+ V LA L A
Sbjct: 450 HSGSFVVLANLYA 462



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/284 (21%), Positives = 117/284 (41%), Gaps = 27/284 (9%)

Query: 86  FDHFTPKNLHIFNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
           FD    K L  +++++   A+  +   +     F  M    ++P  +T+     + A+++
Sbjct: 201 FDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMA 260

Query: 144 LLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
            L  GR +H     SG VE    +   + +MY + G    A  VFD+ PEK     ++ W
Sbjct: 261 TLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEK----CLISW 316

Query: 203 NVLINGCSKIGYLRKAVE------LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
           N LI   +  G+  +A+       L G  P    +  VS++ G    G L++  E F   
Sbjct: 317 NSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTS--VSILYGLSHAGLLERGVEHFRSS 374

Query: 257 -------PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
                  P  G +    +++  ++ G  + A  +   +     +A+    ++ L+AC   
Sbjct: 375 IQDHGLEPSSGQLK--CLVDLLARKGFLDAAEELI--LASPACQADTIAWMTLLAACKSY 430

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
           G  + G+R    +   +    G+    L ++YA  G    AS +
Sbjct: 431 GDPQRGIRCAERVFELEPQHSGSF-VVLANLYASVGRWSDASRI 473


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 194/656 (29%), Positives = 322/656 (49%), Gaps = 108/656 (16%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D+AL +F+    +++  +N+++  L+++   +  +S  V M    VR +  TY     +
Sbjct: 244 VDHALELFESMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTA 303

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK--- 195
            A LS L  G+ LH  +++S    D +V   + ++Y + G  + A +VF    ++N    
Sbjct: 304 CAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSW 363

Query: 196 -------------SESVLLWN---------------VLINGCS----------------- 210
                        SES+ L+N                +I+GCS                 
Sbjct: 364 TVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNRMDMCLARQLHSLSLK 423

Query: 211 ------------------KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
                             K G L+ A  +F  M ++++ SW  ++  + + G++ KA E 
Sbjct: 424 SGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQVGNIGKAREF 483

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGA 311
           F+ M  + V++W AM+  + Q+G  E  L M+  ML +  V  +  T V+    CA +GA
Sbjct: 484 FDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTLFRGCADMGA 543

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
            + G ++  +       L  ++  A++ MY+KCG I  A  +F     KDL++W AMI G
Sbjct: 544 NKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITG 603

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            + HG  +QAI+ F  M+  G +PD   ++A+L++C +SG V+    +FD ++ D+ + P
Sbjct: 604 YSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSP 663

Query: 432 SVKHHTVVVNLLSRVGQ--------DSQGYQNSQNSFTKLL------------QLKPKH- 470
            ++H + +V+LL+R G         D    + +   +  LL            +L  KH 
Sbjct: 664 GLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNELAELAAKHL 723

Query: 471 -----PSS--YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
                P S  Y+LL+ IYA  G+  D A+VR LM+ + IKK+PG+S++EV   VH F+A 
Sbjct: 724 FDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVKNKVHVFKAE 783

Query: 524 --GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQ 581
              H     I  KL+++M    + GY          ++ E   +   HSEKLA+AFG++ 
Sbjct: 784 DVSHPQVIAIREKLDELMEKIAQLGY----------VRTESLRSEIHHSEKLAVAFGIMN 833

Query: 582 TTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
                 I I+K L ICGDCH+++K  S ++ RE V+RD  RFH+FK G+CSC DYW
Sbjct: 834 LPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSCSCGDYW 889



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 152/331 (45%), Gaps = 36/331 (10%)

Query: 78  SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVS 136
           S+  A  +F     +++  +N L+ G  ++  F   +  FV M R     PN  T+    
Sbjct: 110 SLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFTFGCAM 169

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           KS  +L    +   L  L+ K G + D  V   + DM+V+ G    A K F +       
Sbjct: 170 KSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQ------- 222

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                                       + +  V    S++ G+ +   +  A ELFE M
Sbjct: 223 ----------------------------IERPTVFCRNSMLAGYAKSYGVDHALELFESM 254

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           PE+ VVSW  M++  SQ+G A +AL++   M + GVR +  T  S+L+ACAK+ +L  G 
Sbjct: 255 PERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGK 314

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           ++H  +  +   +   + +A+V++YAKCG  + A  VF   ++++ ++WT +I G   +G
Sbjct: 315 QLHAQVIRSLPCIDPYVASAMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYG 374

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            + ++++ F +M       D      I++ C
Sbjct: 375 CFSESLELFNQMRAELMTVDQFALATIISGC 405



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 118/292 (40%), Gaps = 74/292 (25%)

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLG---KTRGAFKVFDETPEKNKSESVLLWNVLING 208
           H  +V  G+    F++  L   Y+  G     RG  +   +  E N    V+  N+++NG
Sbjct: 51  HGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLR--GDITEPN----VITHNIMMNG 104

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
            +K+G L  A ELFG MP+++V SW +L+ G+ + G    A E F  M   G        
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSG-------- 156

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
                                     N FT   A+ +C  +G  E  +++   ++   FG
Sbjct: 157 ----------------------DSLPNAFTFGCAMKSCGALGWHEVALQLLGLLT--KFG 192

Query: 329 LKG--AIGTALVDMYAKCGNIEAASLVFGETK---------------------------- 358
            +G   + T +VDM+ +CG ++ AS  F + +                            
Sbjct: 193 FQGDPDVATGIVDMFVRCGAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFE 252

Query: 359 ---EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
              E+D+++W  M+  L+  GR  +A+     M   G   D T + + LTAC
Sbjct: 253 SMPERDVVSWNMMVSALSQSGRAREALSVAVDMHNRGVRLDSTTYTSSLTAC 304



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 12/170 (7%)

Query: 49  QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           QI    +   L   + +   +I+  S    I  A  IFD  + K+L  +N +I G +++ 
Sbjct: 549 QITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDLVSWNAMITGYSQHG 608

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI-----VKSGVEYD 163
             +  I  F  ML+   +P+ ++Y  V  S +   L+  G+    ++     V  G+E+ 
Sbjct: 609 MGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDMLKRDHNVSPGLEHF 668

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213
           +     + D+  + G    A  + DE P K  +E   +W  L++ C   G
Sbjct: 669 SC----MVDLLARAGNLIEAKNLIDEMPMKPTAE---VWGALLSACKTHG 711



 Score = 42.7 bits (99), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 74/183 (40%), Gaps = 36/183 (19%)

Query: 299 VVSALSACA----------------KVGALEA----GVRVHNYISCNDFG-----LKGAI 333
           +  AL +C                  VG   A       +H Y+SC         L+G I
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 334 GTA-------LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                     +++ YAK G++  A  +FG    +D+ +W  ++ G    GR+  A++ F 
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 387 KMMYSGTE-PDGTVFLAILTACWYSGQVKLALNFFDSM-RFDYFIEPSVKHHTVVVNLLS 444
            M  SG   P+   F   + +C   G  ++AL     + +F +  +P V   T +V++  
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVA--TGIVDMFV 208

Query: 445 RVG 447
           R G
Sbjct: 209 RCG 211


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 193/571 (33%), Positives = 288/571 (50%), Gaps = 90/571 (15%)

Query: 151 LHCLIVKSGVE-YDAFVRVHLADMYVQLGKTRGA-----FKVFDETPEKNKSESVLLWNV 204
           LH   VKSG++ + AFV   L  +    G  + A      +VFD  P       V+ +N 
Sbjct: 50  LHAAAVKSGLQAHPAFV-TRLLTLCTDQGAAKPAQLSYARQVFDRIPGPG---DVVWYNT 105

Query: 205 LING---CSKIGYLR----KAVELFGMMPKKNVA----SWVSL----------------- 236
           L+ G   CS  G  R    +A  +F  M ++ VA    ++VSL                 
Sbjct: 106 LLRGYARCSAAGGARPPAEEAARVFVRMLEEGVAPDTYTFVSLLKACAAARAGEEGRQAH 165

Query: 237 ------------------IDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE 278
                             I+ +   GD + A  +F ++  + VVS+ AMI    ++    
Sbjct: 166 GVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPG 225

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +AL +F +M   G++    T++S LSACA +GALE G  +H Y+          + TAL+
Sbjct: 226 EALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALI 285

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           DMY KCG++E A  VF   + +D   W+ MI   A H    +AI  F++M   G +PD  
Sbjct: 286 DMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDV 345

Query: 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN--- 455
            FL +L AC +SG V   L +FDSMR ++ + P +KH+  V +LL+R GQ  + Y+    
Sbjct: 346 TFLGVLYACSHSGLVSEGLQYFDSMR-EFGLVPGIKHYGCVADLLARSGQLDRAYEFIDE 404

Query: 456 -------------------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV 490
                                     +  F ++L+L   H   YV+ SN+ A  GRW+++
Sbjct: 405 LPIKPTAILWRTLLSACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEM 464

Query: 491 ARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSK--LEDIMAGAREQGYM 548
            RVR LM  + + K PG S IEV+  VH F AG  +  K + ++  ++ ++   +  GY+
Sbjct: 465 NRVRKLMNEKGVVKVPGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYV 524

Query: 549 PGTEWVLH--NIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKY 606
           P T  V H    +EEK  +L  HSEKLA++FGL+ T+PGTT+++VK L +C DCHS+ K 
Sbjct: 525 PNTSHVFHVEMGEEEKAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVCPDCHSMAKL 584

Query: 607 ASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            S +  R I+LRD  RFH+F+DG CSC DYW
Sbjct: 585 VSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/307 (20%), Positives = 130/307 (42%), Gaps = 21/307 (6%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           +  T   ++    ++ + ++ RQ H   +         +   LI+  +       A ++F
Sbjct: 141 DTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMF 200

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                + +  +N +I     +S     +  F  M    ++   +T   V  + A L  L 
Sbjct: 201 GRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALE 260

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLA--DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           LGR +H  + K  V+ D+ V+V+ A  DMY + G    A  VF     +++      W+V
Sbjct: 261 LGRWIHEYVRK--VQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQA----WSV 314

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           +I   +   Y R+A+ LF  M K+ +     +++ ++      G + +  + F+ M E G
Sbjct: 315 MIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMREFG 374

Query: 261 VVS----WTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAG 315
           +V     +  + +  +++G+ ++A    ++ +D   ++       + LSAC   G  + G
Sbjct: 375 LVPGIKHYGCVADLLARSGQLDRA----YEFIDELPIKPTAILWRTLLSACGSRGDADLG 430

Query: 316 VRVHNYI 322
            +V   I
Sbjct: 431 KQVFERI 437


>gi|357127483|ref|XP_003565409.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Brachypodium distachyon]
          Length = 552

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 184/547 (33%), Positives = 282/547 (51%), Gaps = 69/547 (12%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAE 106
           +HA ++   +  ++ + + L+   +       A ++ D +  +      ++N LI G   
Sbjct: 41  VHAHVVKFGMELNAHVASSLVLMYAARGDGAVARTLLDAWPARGGDTPVVWNALISGHRR 100

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
           +  F+     FV M+R  V P  +TY  V  +      + LG  +H  +V SGV  D  V
Sbjct: 101 SRQFRLSCCSFVDMVRTGVVPTPVTYITVLSACGKDKYIWLGMQVHKCVVASGVLPDLKV 160

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L DMY +                                CS+   +  A ELF  M 
Sbjct: 161 GNALIDMYAE--------------------------------CSE---MDAAWELFEGME 185

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            +N  SW S+I GF+R G + +A  LF+ MPE+  VSWTAMI+G+ Q G+  +AL MF +
Sbjct: 186 VRNTVSWTSVISGFLRLGQVDQARTLFDCMPERDTVSWTAMIDGYVQAGQFREALEMFRE 245

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M  + VRA++FT+VS ++ACA++GALE G     Y+S +   +   +G ALVDMY+KCG+
Sbjct: 246 MQFSKVRADEFTMVSVVTACAQLGALETGEWARIYMSRHGIKMDTFVGNALVDMYSKCGS 305

Query: 347 IEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
           I+ A  VF E   +D  TWTA+I GLA++G  E+AI  F +M+     PD   F+ +LTA
Sbjct: 306 IQQALGVFKEMYIRDKFTWTAVILGLAVNGHGEEAINMFYRMLRVFEAPDEVTFIGVLTA 365

Query: 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---- 462
           C ++G V    +FF SM   Y I P+V H   +++LL R G+  +  +   N   +    
Sbjct: 366 CTHAGLVDKGRDFFLSMTGSYGIAPNVMHFGCLIDLLGRAGKLKEALETIGNMPMRPNSA 425

Query: 463 ------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                                   LL+L  ++   Y+LLSN+YA   RW+DV R+R ++ 
Sbjct: 426 IWGTLLAACRVHGNSEIGQLAAEHLLELDTENGMVYILLSNLYAKSNRWEDVRRLRQVIM 485

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPG-TEWVL 555
            + IKK+PG S IE+NG +H F AG   H ++KEI+SKL+ ++   ++ GY+P  TE  +
Sbjct: 486 EKGIKKEPGCSLIEMNGTIHEFIAGDRSHPMSKEIYSKLDKVLTDLKDAGYVPDLTEIFV 545

Query: 556 HNIKEEK 562
              +EEK
Sbjct: 546 QVTREEK 552


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  297 bits (761), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 170/501 (33%), Positives = 272/501 (54%), Gaps = 38/501 (7%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV--- 230
           YV+ G    A  V+ +            +  +I  C+++  L   + + G + K  +   
Sbjct: 110 YVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFV 169

Query: 231 -ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
            A    L+  +++ G+L  A  LF  M E+ +V+W A+I    Q G + KAL  F +M  
Sbjct: 170 AAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGM 229

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           AG++ +  T+VSALSAC  +G LE G  ++ +           +  A +DM AKCG+++ 
Sbjct: 230 AGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDK 289

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409
           A  +F E  ++++++W+ +I G A++G  E+A+  F +M   G +P+   FLA+L+AC +
Sbjct: 290 AMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSH 349

Query: 410 SGQVKLALNFFDSM--RFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-------------- 453
           +G+V     +F+ M    D  I+P  +H+  +V+LL R G   + Y              
Sbjct: 350 TGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGI 409

Query: 454 -----------QN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
                      QN    Q+    L +L P+  S +VLLSN+YAA GRW  V +VR  M++
Sbjct: 410 WGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKK 469

Query: 500 RSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHN 557
           +  +K   +S +E NG +H    G   H  +  I +KLED++   +  GY+P T+ V H+
Sbjct: 470 KGARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHD 529

Query: 558 IK-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIV 616
           ++ EEKE  L  HSEKLA+AF LI  +P   I+++K L ICGDCH+  K  S+I+ REI+
Sbjct: 530 VEDEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREII 589

Query: 617 LRD-TRFHYFKDGTCSCRDYW 636
           +RD  RFH+FK+G CSC+D+W
Sbjct: 590 MRDKNRFHHFKNGICSCKDFW 610



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 134/262 (51%), Gaps = 8/262 (3%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           GD+  A +LF++M +     W  ++ G+ +NG  +KA++++ +M   GVR + FT    +
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
            ACA++  L AG+ +H ++  +      A+ T L+ MY K G +  A  +FG   E+DL+
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            W A+I      G   +A+Q F++M  +G +PD    ++ L+AC + G ++     ++  
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483
           R +  I+ ++  H   +++ ++ G        + N F ++ Q   ++  S+  +   YA 
Sbjct: 263 R-EEGIDSNIIVHNARLDMCAKCGD----MDKAMNLFDEMPQ---RNVISWSTVIGGYAV 314

Query: 484 EGRWKDVARVRTLMQRRSIKKD 505
            G  +    + + M+ + ++ +
Sbjct: 315 NGESEKALALFSRMKNQGVQPN 336



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/325 (20%), Positives = 132/325 (40%), Gaps = 25/325 (7%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           +H  ++ H L   + + T+L+        +  A  +F     ++L  +N LI    +   
Sbjct: 157 MHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVAWNALIAVCVQTGF 216

Query: 110 FQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169
               +  F  M    ++P+ +T      +   L  L  G  ++    + G++ +  V   
Sbjct: 217 SSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNA 276

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK- 228
             DM  + G    A  +FDE P++N    V+ W+ +I G +  G   KA+ LF  M  + 
Sbjct: 277 RLDMCAKCGDMDKAMNLFDEMPQRN----VISWSTVIGGYAVNGESEKALALFSRMKNQG 332

Query: 229 ---NVASWVSLIDGFMRKGDLKKAGELFE---QMPEKGVVS----WTAMINGFSQNGEAE 278
              N  ++++++      G + +  + F    Q  +K +      +  M++   ++G  E
Sbjct: 333 VQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLE 392

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT--- 335
           +A   F +++   + A+     + L ACA    ++ G  V + +    F L   I +   
Sbjct: 393 EAYN-FIKIMP--IEADPGIWGALLGACAIHQNIKLGQHVADLL----FELAPEIASYHV 445

Query: 336 ALVDMYAKCGNIEAASLVFGETKEK 360
            L +MYA  G       V    K+K
Sbjct: 446 LLSNMYAAAGRWHCVEKVRQRMKKK 470


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 205/659 (31%), Positives = 321/659 (48%), Gaps = 80/659 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R++HA ++         +   L++  +    +  A  +FD     +   +N +I G  EN
Sbjct: 215 REVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVFDSMAVMDCISWNAMIAGHFEN 274

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
               + +  F+ ML+  V+PN +T   V+ +   LS ++  + +H L VK G   D    
Sbjct: 275 GECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDVAFC 334

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY  LG    A  VF     +  +   + W  +I+G  K G+  KA+E++ +M  
Sbjct: 335 NSLIQMYASLGMMGQARTVF----SRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEV 390

Query: 228 KNVA-----------------------------------SWV----SLIDGFMRKGDLKK 248
            NV+                                   S+V    +L++ + +   + K
Sbjct: 391 NNVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDK 450

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           A E+F+ MPEK VVSW++MI GF  N    +AL  F  ML A V+ N  T ++AL+ACA 
Sbjct: 451 AIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHML-ADVKPNSVTFIAALAACAA 509

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAM 368
            GAL +G  +H ++       +G +  AL+D+Y KCG    A   F     KD+++W  M
Sbjct: 510 TGALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIM 569

Query: 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428
           I G   HG  E A+ +F +M+  G  PD   F+A+L AC   G V      F SM   Y 
Sbjct: 570 IAGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYS 629

Query: 429 IEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QNSQNSF 460
           I P++KH+  +V+LLSRVGQ ++ Y                            +  + + 
Sbjct: 630 IVPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAA 689

Query: 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF 520
             +L+L+P     +VLL ++YA  G W  +ARVR  M+ + +  D G S++EV G VH F
Sbjct: 690 KYVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAF 749

Query: 521 --EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLALA 576
             +   H   +EI++ LE I    +  G  P      H+ +++  K++    HSE+LA+A
Sbjct: 750 LTDDESHPQIREINTVLEGIYERMKASGCAPVES---HSPEDKVLKDDIFCGHSERLAVA 806

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDTR-FHYFKDGTCSCRD 634
           FGLI TTPGT+I + K    C  CH ++K  S I +R+I++RD++  H+FKDG+CSC D
Sbjct: 807 FGLINTTPGTSISVTKNQYTCQSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 114/263 (43%), Gaps = 43/263 (16%)

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMP 226
           M V+ G+T  A++VF + PE++    V  WNV++ G  K G L +A++L+      G+ P
Sbjct: 138 MLVRFGETWHAWRVFAKMPERD----VFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRP 193

Query: 227 K-----------KNVASW------------------VSLIDGFM----RKGDLKKAGELF 253
                         V  W                  V +++  M    + GD+  A ++F
Sbjct: 194 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVF 253

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313
           + M     +SW AMI G  +NGE    L +F  ML   V+ N  T+ S   A   +  + 
Sbjct: 254 DSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDIT 313

Query: 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA 373
               +H       F    A   +L+ MYA  G +  A  VF     +D ++WTAMI G  
Sbjct: 314 FAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYE 373

Query: 374 IHGRYEQAIQYFKKMMYSGTEPD 396
            +G  ++A++ +  M  +   PD
Sbjct: 374 KNGFPDKALEVYALMEVNNVSPD 396



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 88/172 (51%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +++   +R G+   A  +F +MPE+ V SW  M+ G+ + G  E+AL ++ +M+ AGVR 
Sbjct: 134 AMLSMLVRFGETWHAWRVFAKMPERDVFSWNVMVGGYGKAGLLEEALDLYHRMMWAGVRP 193

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
           + +T    L +C  V     G  VH ++    F  +  +  AL+ MYAKCG++ AA  VF
Sbjct: 194 DVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVVAARKVF 253

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
                 D ++W AMI G   +G     ++ F  M+    +P+     ++  A
Sbjct: 254 DSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVA 305


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 311/624 (49%), Gaps = 73/624 (11%)

Query: 49   QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
            Q+   II +    S  +   LIS  S   S++ A  +FDH    ++  +N +I   A + 
Sbjct: 497  QVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHG 556

Query: 109  HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168
              +  +  F +M  L    N  T   +    +S+  L  GRG+H L+VK G++ +  +  
Sbjct: 557  LCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICN 616

Query: 169  HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
             L  +Y + G++  A  VF                                     M ++
Sbjct: 617  TLLTLYSEAGRSEDAELVFQA-----------------------------------MTER 641

Query: 229  NVASWVSLIDGFMRKGD----LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
            ++ SW S++  +++ G     LK   EL  QM +   V+W A+I G ++N E  +A+  +
Sbjct: 642  DLISWNSMMACYVQDGKCLDGLKILAELL-QMGKPDRVTWNALIGGHAENEEPNEAVKAY 700

Query: 285  FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
              + + G+ AN  T+VS L+A A +  LE G ++H  +    F     +  A +DMY KC
Sbjct: 701  KLIREKGIPANYITMVS-LAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKC 759

Query: 345  GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            G +     +  +   +  L+W  +I   A HG +++A + F +M+  G +PD   F+++L
Sbjct: 760  GEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLL 819

Query: 405  TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS--QGY--------- 453
            +AC + G V   L ++DSM  ++ + P ++H   +++LL R G+ S  +G+         
Sbjct: 820  SACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPN 879

Query: 454  -----------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                             + ++ +   LL+L P   S+YVL SN+ A  G+W+DV  +R  
Sbjct: 880  DLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKE 939

Query: 497  MQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWV 554
            M   +IKK P  S++++   VH F  G   H  A  I +KL ++M   +E GY+P T + 
Sbjct: 940  MGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFA 999

Query: 555  LHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR 613
            LH++ EE KE  L  HSE+LALAFGLI T   +T++I K L +CGDCHS+ K+ S I  R
Sbjct: 1000 LHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGR 1059

Query: 614  EIVLRDT-RFHYFKDGTCSCRDYW 636
            +IVLRD  RFH+F  G CSC DYW
Sbjct: 1060 KIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 149/344 (43%), Gaps = 84/344 (24%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G  +H  ++ +G   D  +   L   YV++G    A  VFD  PE+    SV+ W  +++
Sbjct: 49  GHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPER----SVVSWTAMVS 104

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
           G S+ G   KA  LF  M    V +  +L+D   + G ++ A  LF  M E+ VVSW AM
Sbjct: 105 GYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSKCGKMEDASYLFGTMMERDVVSWNAM 164

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G++  G A+ +  MF  ML  G+  + +T+ S L A A+ G L    ++H  I+   +
Sbjct: 165 IGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGY 224

Query: 328 G------------------LKGA-----------------------------IGTALVDM 340
           G                  L+ A                             +G AL+DM
Sbjct: 225 GSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDM 284

Query: 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR----------------------- 377
           YAK G IE A   F E +EK++++WT++I G A HG                        
Sbjct: 285 YAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMRHRNEASWST 344

Query: 378 ----------YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
                     YE+A+  F +M   G EP+G +  +++TAC  SG
Sbjct: 345 MLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 388



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 155/338 (45%), Gaps = 15/338 (4%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +F     +++  +N +I G A           F  MLR  + P+  T   V ++ A    
Sbjct: 149 LFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGG 208

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL--- 201
           L +   +H +I + G      V   L + Y + G  R A  +     +K+   S  L   
Sbjct: 209 LIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITG 268

Query: 202 ---------WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG--DLKKAG 250
                     N LI+  +K G +  A   F  M +KNV SW SLI G+ + G   +  A 
Sbjct: 269 YAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHAR 328

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
            +F++M  +   SW+ M++G+ + G  E+A+ +F QM   GV  N F V S ++AC++ G
Sbjct: 329 YVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSG 388

Query: 311 AL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
            + + G +VH ++          +GTALV  Y   G +  A  +F E  + ++++WT+++
Sbjct: 389 YMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLM 448

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            G +  G   + +  +++M   G   +   F  + ++C
Sbjct: 449 VGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 486



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 88/391 (22%), Positives = 163/391 (41%), Gaps = 56/391 (14%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITT------------QLISSA 73
           S +I    +I+    + S +  + +   ++  +LF+S+ + T             LI   
Sbjct: 226 SYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMY 285

Query: 74  SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVF-MLRLSVRPNRLTY 132
           +    I+ A   FD    KN+  +  LI G A++ +     + +VF  +R     N  ++
Sbjct: 286 AKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMR---HRNEASW 342

Query: 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192
             +      + L     GL C +   GVE + F+   L                      
Sbjct: 343 STMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASL---------------------- 380

Query: 193 KNKSESVLLWNVLINGCSKIGYL-RKAVELFGMMPKKNVASWV----SLIDGFMRKGDLK 247
                        I  CS+ GY+  +  ++ G + K  +   V    +L+  +   G + 
Sbjct: 381 -------------ITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVY 427

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A +LFE+MP+  VVSWT+++ G+S +G   + L ++ +M   GV  N  T  +  S+C 
Sbjct: 428 NAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCG 487

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            +     G +V  +I    F    ++  +L+ M++   ++E A  VF    E D+++W A
Sbjct: 488 LLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNA 547

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           MI   A HG   ++++ F  M +   E + T
Sbjct: 548 MISAYAHHGLCRESLRCFHWMRHLHNETNST 578



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 50/94 (53%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L  C    A + G  +H ++  N FG    + T L+  Y K G++ AA  VF    E+ +
Sbjct: 37  LQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSV 96

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++WTAM+ G + +GR+E+A   F  M + G + +
Sbjct: 97  VSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN 130


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 249/447 (55%), Gaps = 39/447 (8%)

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           + N     +L++ + + G L +A  +F  +  K +VSWTA+++ +S+     +AL +F +
Sbjct: 43  ESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFRE 102

Query: 287 M----LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMY 341
           M    LD G + +       L ACA + A   G   H  I  C      G +G  +++MY
Sbjct: 103 MTLHGLD-GTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMY 161

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            KCGN+ AA  VF    E+D + WT +I G A HG  E+++  F +M   G++PDG   L
Sbjct: 162 GKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLL 221

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------- 452
            +L+ C ++G V+   +FF  +  ++ +EP  KH+  +++LL R G              
Sbjct: 222 CVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPF 281

Query: 453 -------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                               +  + +  K+L+L+P  P++YV LSNIYAA G W  V RV
Sbjct: 282 QATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRV 340

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R+ M+   ++KDPG S IEVN  VH F AG   H  A EI+  LE +       GY+P T
Sbjct: 341 RSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDT 400

Query: 552 EWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           + VL N+ EE++E L C HSEKLA+AFGL+ T  G++++I+K L +CGDCH+  K+ S+I
Sbjct: 401 KLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRI 460

Query: 611 SQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + REI +RD+ RFH+F+DG CSC DYW
Sbjct: 461 AGREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 65/125 (52%), Gaps = 4/125 (3%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           M   GV  +    V+ L+AC    A L  G  +H+ +          + TALV+MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM---YSGTEPDGTVFLA 402
            ++ A+ VF   + KDL++WTA++   +    Y +A+Q F++M      GT+PD + F  
Sbjct: 61  CLDEATRVFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 403 ILTAC 407
           +L AC
Sbjct: 121 LLQAC 125



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 114/251 (45%), Gaps = 17/251 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IH+ ++   L +++ + T L++       +D A  +F     K+L  +  L+   +    
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSREDL 92

Query: 110 FQSCISHFVFMLRLSV---RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAF 165
           ++  +  F  M    +   +P+R  + F+ ++ A+LS  + GR  H  I + G +  D  
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGV 152

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           + + + +MY + G  R A +VFD   E++     + W  +I+G +  G+  +++ +F  M
Sbjct: 153 LGLGIINMYGKCGNLRAAHEVFDGMSERD----TVAWTTIISGYAHHGHSEESLLMFWRM 208

Query: 226 ----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGE 276
                K +  S + ++      G +++  + F  +      E G   +  MI+   ++G+
Sbjct: 209 QQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGD 268

Query: 277 AEKALAMFFQM 287
            E A  M  +M
Sbjct: 269 LEAAEVMIRRM 279


>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 582

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 171/469 (36%), Positives = 257/469 (54%), Gaps = 35/469 (7%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N LI+  S  G L  A ++F   P+ ++ +W  L+ G+ +  D     E F QMP +  V
Sbjct: 114 NGLIHAYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSV 173

Query: 263 SWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNY 321
           SW  +I     NGE E+A+A+F +ML +   + +  T+VS +SA A +GAL  G+  H Y
Sbjct: 174 SWNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAY 233

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQ 380
           +   +  +   + +AL++MY+KCG IE A  VF  +   + + TW AM+ G    G  E+
Sbjct: 234 VCRKEIEVDEKLSSALINMYSKCGFIEGAVYVFENSCALRSVDTWNAMLAGFTASGCSER 293

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A++ F +M  SG  P+   F  +L AC + G V+  + +F+ M     IEP + H+  +V
Sbjct: 294 ALELFTRMESSGFVPNKITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMV 353

Query: 441 NLLSRVG----------------------------QDSQGYQNSQNSFTKLLQLKPKHPS 472
           +L  R G                            +    ++  + +  +L++  P   +
Sbjct: 354 DLFCRAGLFEKAEEMIQMMPMEPDAAVWKALVGACRTYSNFELGKKAGHRLIEAAPNDHA 413

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
            YVLLSNIYA +G WK V +VR LM    ++K PG S IE++G +H F +G   H   ++
Sbjct: 414 GYVLLSNIYALDGNWKGVYKVRKLMLNCGVQKVPGSSSIELDGVIHEFISGDKSHSRKRD 473

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNIKEE--KEEALGCHSEKLALAFGLIQTTPGTTI 588
           ++  L +I    +  GY P T  VL +I +E  KE +L  HSE+LALAFGLI T PGT I
Sbjct: 474 VYEMLSEICQQLKVAGYAPDTSQVLLDIDDEDVKESSLALHSERLALAFGLISTAPGTPI 533

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +IVK L +CGDCH+ +K  SKI  R I++RD  RFH F++G+CSC DYW
Sbjct: 534 RIVKNLRVCGDCHNAIKLLSKIYGRCIMVRDANRFHRFREGSCSCGDYW 582



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/206 (22%), Positives = 87/206 (42%), Gaps = 7/206 (3%)

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           AL +F  +L +G   +      AL+ CA+  A  A  ++H + +         +   L+ 
Sbjct: 59  ALRLFDHLLRSGADPDPIAYALALARCARERAYPAAAQLHGHAAKRGAASHRRVRNGLIH 118

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
            Y+ CG +  A  VF    E D++ W  ++ G A  GR   A++ F   M      D   
Sbjct: 119 AYSVCGMLFDARKVFDHGPEVDMIAWNCLLRGYA-QGRDTGALREFFAQM---PARDSVS 174

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459
           +  ++  C  +G+ + A+  F  M      +P       V++ ++ +G  +QG       
Sbjct: 175 WNTVIAWCVANGEHEEAVAVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYV 234

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEG 485
             K +++  K  S+ +   N+Y+  G
Sbjct: 235 CRKEIEVDEKLSSALI---NMYSKCG 257


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 165/447 (36%), Positives = 249/447 (55%), Gaps = 39/447 (8%)

Query: 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
           + N     +L++ + + G L +A  +F  +  K +VSWTA+++ +S+     +AL +F +
Sbjct: 43  ESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFRE 102

Query: 287 M----LDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI-SCNDFGLKGAIGTALVDMY 341
           M    LD G + +       L ACA + A   G   H  I  C      G +G  +++MY
Sbjct: 103 MTLHGLD-GTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMY 161

Query: 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401
            KCGN+ AA  VF    E+D + WT +I G A HG  E+++  F +M   G++PDG   L
Sbjct: 162 GKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGVSLL 221

Query: 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG--------- 452
            +L+ C ++G V+   +FF  +  ++ +EP  KH+  +++LL R G              
Sbjct: 222 CVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRRMPF 281

Query: 453 -------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493
                               +  + +  K+L+L+P  P++YV LSNIYAA G W  V RV
Sbjct: 282 QATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQVDRV 340

Query: 494 RTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGT 551
           R+ M+   ++KDPG S IEVN  VH F AG   H  A EI+  LE +       GY+P T
Sbjct: 341 RSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYVPDT 400

Query: 552 EWVLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKI 610
           + VL N+ EE++E L C HSEKLA+AFGL+ T  G++++I+K L +CGDCH+  K+ S+I
Sbjct: 401 KLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFVSRI 460

Query: 611 SQREIVLRDT-RFHYFKDGTCSCRDYW 636
           + REI +RD+ RFH+F+DG CSC DYW
Sbjct: 461 AGREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 64/125 (51%), Gaps = 4/125 (3%)

Query: 287 MLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           M   GV  +    V+ L+AC    A L  G  +H+ +          + TALV+MY K G
Sbjct: 1   MQQEGVLPDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAG 60

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM---YSGTEPDGTVFLA 402
            ++ A+ VF     KDL++WTA++   +    Y +A+Q F++M      GT+PD + F  
Sbjct: 61  CLDEATRVFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGLDGTKPDRSYFAF 120

Query: 403 ILTAC 407
           +L AC
Sbjct: 121 LLQAC 125



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/251 (21%), Positives = 114/251 (45%), Gaps = 17/251 (6%)

Query: 50  IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109
           IH+ ++   L +++ + T L++       +D A  +F     K+L  +  L+   +    
Sbjct: 33  IHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSREDL 92

Query: 110 FQSCISHFVFMLRLSV---RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAF 165
           ++  +  F  M    +   +P+R  + F+ ++ A+LS  + GR  H  I + G +  D  
Sbjct: 93  YREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGV 152

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225
           + + + +MY + G  R A +VFD   E++     + W  +I+G +  G+  +++ +F  M
Sbjct: 153 LGLGIINMYGKCGNLRAAHEVFDGMSERD----TVAWTTIISGYAHHGHSEESLLMFWRM 208

Query: 226 ----PKKNVASWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGE 276
                K +  S + ++      G +++  + F  +      E G   +  MI+   ++G+
Sbjct: 209 QQDGSKPDGVSLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGD 268

Query: 277 AEKALAMFFQM 287
            E A  M  +M
Sbjct: 269 LEAAEVMIRRM 279


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 186/591 (31%), Positives = 296/591 (50%), Gaps = 77/591 (13%)

Query: 31  ETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT 90
           E   I+ + +     QL++IHA ++  +L  S+ + T+++ S      + YA  +F    
Sbjct: 10  ENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLL 69

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS---VRPNRLTYPFVSKSVASLSLLSL 147
             N+  +N +IR  A N H  S IS FV ML  S   V P++ T+PFV KS   +    L
Sbjct: 70  HPNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRL 129

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G  +H L+ K G ++       L DMY                                 
Sbjct: 130 GMQVHGLVYKFGADFHCITENALIDMY--------------------------------- 156

Query: 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM 267
             +K G L  A ++F  M  ++V SW SLI G+++ G +  A ELF+ MP + +VSWT M
Sbjct: 157 --TKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTM 214

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I G+ + G    AL +F +M   G+  ++ ++++ L ACA++GALE G  +H Y   N F
Sbjct: 215 ITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGF 274

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
             K  I  AL++MYAKCG I+ A  +F +  EKD+++W+ MI GLA HG+  +AIQ F++
Sbjct: 275 LRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEE 334

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
           M      P+   FL +L AC ++G     L +FD M   Y IEP ++H+  +++LL R G
Sbjct: 335 MCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLGRSG 394

Query: 448 ---------------QDSQGYQNSQNS-------------FTKLLQLKPKHPSSYVLLSN 479
                           DS+ + +  +S               +L++L+P+   +YVLL+N
Sbjct: 395 CLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELEPEESGNYVLLAN 454

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLED 537
           +YA  G+W+DV+ +R L++ + IKK PG S IEVN  V  F +       ++E+   LE 
Sbjct: 455 MYAEHGKWEDVSNIRKLIRNKRIKKTPGSSSIEVNNVVQEFVSSDDSKPFSQEVFWILEG 514

Query: 538 IMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           +            T  ++  ++E+K E +   SE   L  G++Q   G ++
Sbjct: 515 LALNQTR------TNDLMEPVEEDKHEGI---SEAATLEVGVLQPLLGPSL 556


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 180/556 (32%), Positives = 287/556 (51%), Gaps = 76/556 (13%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI------SSASLHKSI 79
           S++ T+   I L+ +  S + L+QI  QI+      S     + +      S  +LH   
Sbjct: 27  SSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLH--- 83

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
            YA  IF++     L I+N++I+   +N  F+  +  F  +    + P+  TYPFV K++
Sbjct: 84  -YAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAI 142

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
             L  +  G  ++  +VKSG+E+D +V   L DMY ++G+ +   +VF+E P+++    V
Sbjct: 143 GCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRD----V 198

Query: 200 LLWNVLINGCSKIGYLRKAVE----LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
           + WNVLI+G  K      AV+    +F  MP K V  W S++ G++  G L +A ELFE+
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRQIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 258

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
            P + VV WTAMING+ Q    + A+A+F +M    V  + FT+V+ L+           
Sbjct: 259 SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLT----------- 307

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
                            +GTAL++MYAKCG IE +  +F   KEKD  +WT++I GLA++
Sbjct: 308 --------------DAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMN 353

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           G+  +A++ F +M+ +G +PD   F+ +L+AC + G V+     F SM   Y IEP ++H
Sbjct: 354 GKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEH 413

Query: 436 HTVVVNLLSRVGQDSQGYQ------NSQNSFT-------------------------KLL 464
           +  +++LL R GQ  +  +      N  N                            +L+
Sbjct: 414 YGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLV 473

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG- 523
            ++    S + LL+NIYA+  RW+DV +VR  M+   +KK PG S +EVNG VH F  G 
Sbjct: 474 GIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSVEVNGIVHEFLVGD 533

Query: 524 -GHKLAKEIHSKLEDI 538
             H   +EI+S L+ I
Sbjct: 534 ASHPEMREIYSMLDSI 549


>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/435 (36%), Positives = 240/435 (55%), Gaps = 33/435 (7%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294
           +LI+ +   GD+  +  +F+++ E  VV++ A+I   ++N  A +ALA+F ++ + G++ 
Sbjct: 152 TLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKP 211

Query: 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354
            D T++  LS+CA +G+L+ G  +H Y+    F     + T L+DMYAKCG+++ A  VF
Sbjct: 212 TDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVF 271

Query: 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414
            +  ++D   W+A+I   A HG   QAI    +M     +PD   FL IL AC ++G V+
Sbjct: 272 RDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVE 331

Query: 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------------------- 453
               +F  M  +Y I PS+KH+  +V+LL R G+  + Y                     
Sbjct: 332 EGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSA 391

Query: 454 -------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506
                  +  +    ++ +L   H   YV+ SN+ A  G+W DV  +R  M  +   K P
Sbjct: 392 CSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARYGKWDDVNHLRKTMIDKGAVKIP 451

Query: 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI--KEEK 562
           G S IEVN  VH F AG   H  +  +H  L++++   +  GY+P T  V +     EEK
Sbjct: 452 GCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKELKSAGYVPDTSLVFYADMEDEEK 511

Query: 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-R 621
           E  L  HSEKLA+ FGL+ T PGTTI++VK L +CGDCH+  K+ S I  R+I+LRD  R
Sbjct: 512 EIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHNAAKFISLIFGRQIILRDVQR 571

Query: 622 FHYFKDGTCSCRDYW 636
           FH+FKDG CSC DYW
Sbjct: 572 FHHFKDGKCSCGDYW 586



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 183/414 (44%), Gaps = 69/414 (16%)

Query: 24  KPSNNITE----THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI---SSASLH 76
           KP+   T      H+ISLI    + K+L+QI A  I  N   ++ + T+ I   +S    
Sbjct: 15  KPNTETTSLLPLPHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTK 74

Query: 77  KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136
            S+++A  +FD  T  N+ +FN + RG A  +     I+HF   LRL             
Sbjct: 75  ASMEHAHQLFDQITQPNIVLFNTMARGYARLNDPLRMITHFRRCLRL------------- 121

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
             V+ +  L+ G+ LHC  VK GV  + +V   L +MY   G    + +VFD+  E    
Sbjct: 122 --VSKVKALAEGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEP--- 176

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK----------------NVASWV 234
             V+ +N +I   ++     +A+ LF      G+ P                  ++  W+
Sbjct: 177 -CVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWM 235

Query: 235 -----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                            +LID + + G L  A  +F  MP++   +W+A+I  ++ +G+ 
Sbjct: 236 HEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDG 295

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--T 335
            +A++M  +M    V+ ++ T +  L AC+  G +E G    + ++ N++G+  +I    
Sbjct: 296 FQAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMT-NEYGIVPSIKHYG 354

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDL-LTWTAMIWGLAIHGRYEQAIQYFKKM 388
            +VD+  + G ++ A     E   K   + W  ++   + HG  E   +  +++
Sbjct: 355 CMVDLLGRAGRLDEAYKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERI 408


>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 611

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 196/580 (33%), Positives = 307/580 (52%), Gaps = 47/580 (8%)

Query: 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLSLLSLGRGLHCLIVKS 158
           +R L  +S   S +  F F+L+  +  N L  T  F + + A+ +LL     L   ++  
Sbjct: 35  LRLLERSSTPASLLQSFAFLLKSGLHSNPLVVTRLFAASASAAPALLE---PLVSSLLGP 91

Query: 159 GVEYDAF-----VRVHLADMYVQLGKTRGAFKVF----DETPEKNKSESVLLWNVLINGC 209
            +  DAF     +R H+   +    +   AF          P K     +L     + G 
Sbjct: 92  SLPLDAFLVNTLIRTHVTSPFPSARRRAAAFFPLMLRAAVAPNKFTFPFLLKSCAALPGS 151

Query: 210 SKIGYLRKAVEL-FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
             +G    A  L FG      V++ +  +      G L  A  +FE+MP +  V+W+AMI
Sbjct: 152 PDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDARNVFERMPRESAVTWSAMI 211

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            G+ + G +  A+ +F  M  +GVR ++ TV+  L+A A +GALE    V  ++     G
Sbjct: 212 GGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIGVLAAAADLGALELTRWVGRFVEREGIG 271

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +  AL+D  AKCG+++ A  VF   +E+ +++WT++I  LA+ GR ++A+  F++M
Sbjct: 272 KSVTLCNALIDTLAKCGDVDGAVAVFEGMEERTVVSWTSVIDALAMEGRGKEAVGVFEEM 331

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G  PD   F+ +LTAC ++G V     +FDSM+ +Y IEP ++H+  +V++  R G 
Sbjct: 332 KAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGM 391

Query: 449 DSQGYQNSQ---------------------------NSFTK-LLQLKPKHPSSYVLLSNI 480
             QG +  +                            S T+ LL   P H ++YV+LSN+
Sbjct: 392 VEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRLELGESITRNLLNEFPAHEANYVMLSNV 451

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YA   RWK+ + +R  M +R IKK PG S +E++G VH F AG   H   KEI+  +E++
Sbjct: 452 YALTQRWKEKSEIRREMSKRGIKKVPGCSLVELDGEVHEFIAGDESHPQYKEIYRMVEEM 511

Query: 539 MAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
               R  G++  T  VL ++ EE KE AL  HSEKLA+AF L++T PGT +++VK L +C
Sbjct: 512 SRELRRIGHIAATSEVLLDLDEEDKEGALQWHSEKLAIAFVLLRTPPGTQVRVVKNLRVC 571

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+ +K  S++  REIV+RD +RFH FKDG+CSC+D+W
Sbjct: 572 SDCHAAIKCISQVYNREIVVRDRSRFHRFKDGSCSCKDFW 611


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 174/470 (37%), Positives = 266/470 (56%), Gaps = 43/470 (9%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKG 260
           L+N C+++  L    E+   + K    S +    +LI  +   G+L  A  LF++   + 
Sbjct: 41  LLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRD 100

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV-H 319
           +VS+  MI G+++  + E AL +F +M ++    ++ T+V+ LSACA++GA + G R+ H
Sbjct: 101 LVSYNTMIKGYAEVNQPESALCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYH 156

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGR 377
            YI    F     +  A++DMYAKCG+I++A  +F    +  K    + +MI GLA HG 
Sbjct: 157 QYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGL 216

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437
            E AI  F++++ +G +PD   F+ +L AC +SG ++     F+SM   Y I+P ++H+ 
Sbjct: 217 GETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYG 276

Query: 438 VVVNLLSRVGQDSQGYQNSQ------NSFT----------------------KLLQLKPK 469
            +V+LL R G   + Y   Q      NS                        KLL+++ +
Sbjct: 277 CMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQ 336

Query: 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKL 527
           H + YVLLSNI A   +W++  +VR +M+   I+K PGWSYIE+ G +HRF A    H  
Sbjct: 337 HGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQ 396

Query: 528 AKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGT 586
            KEI   L+D+    +  GY+P T  V+ +I +EEKE  +  HSEKLALAFGL+  +P  
Sbjct: 397 GKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTD 456

Query: 587 TIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
           TI+IVK L IC DCH   K  S+I  REI +RDT RFH+F++G+CSC D+
Sbjct: 457 TIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDF 506



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYI 322
           W  MI G+S++    +A+ ++  M+  G+   N+FT    L++CA++ +LE G  VH++I
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
             + F     +  AL+ +Y+  GN+  A  +F E+  +DL+++  MI G A   + E A+
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESAL 121

Query: 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             F +M  S    D    +A+L+AC   G   L 
Sbjct: 122 CLFGEMQNS----DEVTLVAVLSACARLGAFDLG 151



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 136/303 (44%), Gaps = 23/303 (7%)

Query: 25  PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALS 84
           P NN T   +++     +S +   ++H+ II H   +   +   LI   S+  +++ A +
Sbjct: 32  PPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLART 91

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD    ++L  +N +I+G AE +  +S +  F  M       + +T   V  + A L  
Sbjct: 92  LFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEM----QNSDEVTLVAVLSACARLGA 147

Query: 145 LSLGRGLHCLIVKSGV-EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
             LG+ L+   +++GV   +  +   + DMY + G    A ++F    +  K+  V  +N
Sbjct: 148 FDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFV--FN 205

Query: 204 VLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM- 256
            +I G ++ G    A+ +F      G+ P +   ++V ++      G +++  +LFE M 
Sbjct: 206 SMIAGLAQHGLGETAITVFRELISTGLKPDE--VTFVGVLCACGHSGLIEEGKKLFESMF 263

Query: 257 ----PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
                +  +  +  M++   + G  E+A  +  +M      AN     + LSAC   G +
Sbjct: 264 NAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKM---PFEANSVIWRALLSACRTHGNV 320

Query: 313 EAG 315
           + G
Sbjct: 321 KIG 323


>gi|15228028|ref|NP_181820.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206274|sp|Q9SJG6.1|PP200_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g42920, chloroplastic; Flags: Precursor
 gi|4512663|gb|AAD21717.1| hypothetical protein [Arabidopsis thaliana]
 gi|20197867|gb|AAM15291.1| hypothetical protein [Arabidopsis thaliana]
 gi|110738441|dbj|BAF01146.1| hypothetical protein [Arabidopsis thaliana]
 gi|330255093|gb|AEC10187.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 189/545 (34%), Positives = 289/545 (53%), Gaps = 69/545 (12%)

Query: 26  SNNITETHIISLIHSSNST-KQLRQIHAQIILHNLFASSRITTQLISSASLHKS-IDYAL 83
           S +++    + LI +  ST ++L+QIHA +I   L + +   +++++      S ++YA 
Sbjct: 19  SGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSDMNYAY 78

Query: 84  SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVSKSVAS 141
            +F     KN  ++N +IRG + +S  +  IS F+ ML    SV+P RLTYP V K+   
Sbjct: 79  LVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGR 138

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L     GR LH +++K G+E D+F+R  +  MYV  G    A+++F              
Sbjct: 139 LGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF-------------- 184

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
                     IG+              +V +W S+I GF + G + +A  LF++MP++  
Sbjct: 185 -------LGMIGF--------------DVVAWNSMIMGFAKCGLIDQAQNLFDEMPQRNG 223

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW +MI+GF +NG  + AL MF +M +  V+ + FT+VS L+ACA +GA E G  +H Y
Sbjct: 224 VSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQGRWIHEY 283

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
           I  N F L   + TAL+DMY KCG IE    VF    +K L  W +MI GLA +G  E+A
Sbjct: 284 IVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLANNGFEERA 343

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441
           +  F ++  SG EPD   F+ +LTAC +SG+V  A  FF  M+  Y IEPS+KH+T++VN
Sbjct: 344 MDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIKHYTLMVN 403

Query: 442 LLSRVG---------------QDSQGYQNSQNSFTK-------------LLQLKPKHPSS 473
           +L   G               +D+  + +  ++  K             L +L P     
Sbjct: 404 VLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKLDPDETCG 463

Query: 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA--GGHKLAKEI 531
           YVLLSN YA+ G +++    R LM+ R ++K+ G S IEV+  VH F +  G H  + EI
Sbjct: 464 YVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGTHPKSAEI 523

Query: 532 HSKLE 536
           +S L+
Sbjct: 524 YSLLD 528


>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
          Length = 546

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 170/527 (32%), Positives = 288/527 (54%), Gaps = 49/527 (9%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
           T + I +L+ +  +T  L Q+HA+II   L     + +Q ++  +   +  Y  S+F+  
Sbjct: 24  TTSSISTLLKACTTTSTLEQVHARIIRKGLHQDHFLISQFLTLCNSLSNFSYTTSVFNGV 83

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
           +  +  ++N  I+G +EN      +S F+ M R    P++ TYP + K+ + +  +  G 
Sbjct: 84  SSPSTVLWNTYIKGYSENYSVSLTVSLFIRMKRSDAVPDKFTYPSLIKACSKVCGVKEGV 143

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
             H   V+ GV  D FV   L D+Y + G+   A KVFDE  E+N    V+ W  +I G 
Sbjct: 144 AFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVFDEMGERN----VVSWTAMIAGY 199

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
           +    L +A +LF  MP+KN  SW ++I G+++ GDL+ A ++F++MP + VVS+T MI+
Sbjct: 200 ASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARKMFDEMPHRNVVSFTTMID 259

Query: 270 GFSQNGEAEKAL---------------AMFFQML-DAGVRANDFTVVSALSACAKVGALE 313
           G++++G+   A                A+ F++  +  V+ ++F +VS +SAC+++G+LE
Sbjct: 260 GYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPDEFIMVSLMSACSQMGSLE 319

Query: 314 AGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
               V +Y+  +   +  A +  AL+DM AKCG+++ A+ +F E  ++DL+++ +M+ GL
Sbjct: 320 LAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLISYCSMMQGL 379

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432
           +IHG   QA+  F +M+  G  PD   F  ILTAC  +G V     +F+SM+ DY I PS
Sbjct: 380 SIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPS 439

Query: 433 VKHHTVVVNLLSRVGQDSQGYQNSQNS----------------------------FTKLL 464
             H+  +V+LL R G+  + Y+  ++                               +L 
Sbjct: 440 PDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELGEVVADQLF 499

Query: 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
           +L+P++  +YVLLSNIYAA  +W DV+ +R  M+ R I+K PG S+I
Sbjct: 500 ELEPQNAGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 546


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 183/577 (31%), Positives = 297/577 (51%), Gaps = 69/577 (11%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           +H  ++   + QIHAQ++  NL     +  +LI++ SL + +  A+++F+H    N+H++
Sbjct: 28  LHKCSNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLY 87

Query: 98  NVLIRGLAEN-SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           N +IR  A N SH     + F  M +  + P+  TYPF+ K+    S L L R +H  + 
Sbjct: 88  NSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVE 147

Query: 157 KSGVEYDAFVRVHLADMYVQLGKT--RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           K G   D FV   L D Y + G     GA  +F    E++    V+ WN +I G  + G 
Sbjct: 148 KFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERD----VVTWNSMIGGLVRCGE 203

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           L  A +LF  MP++++ SW +++DG+ + G++ +A ELFE+MP++ +VSW+ M+ G+S+ 
Sbjct: 204 LEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIVSWSTMVCGYSKG 263

Query: 275 GE--------------------------AEK-----ALAMFFQMLDAGVRANDFTVVSAL 303
           G+                          AEK     A  ++ +M +AG+R +D  ++S L
Sbjct: 264 GDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISIL 323

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDL 362
           +ACA+ G L  G R+H  +    F     +  A +DMYAKCG ++AA  VF G   +KD+
Sbjct: 324 AACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDV 383

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++W +MI G A+HG  E+A++ F +M+  G EPD   F+ +L AC ++G V     +F S
Sbjct: 384 VSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYS 443

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY-----------------------QNSQNS 459
           M   Y I P V+H+  +++LL R G   + +                        ++   
Sbjct: 444 MEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLLRSMPMEPNAIILGTLLNACRMHNDVD 503

Query: 460 FTK-----LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
           F +     L +++P  P +Y LLSNIYA  G W +VA VR  M     +K  G S IEV 
Sbjct: 504 FARAVCEQLFKVEPTDPGNYSLLSNIYAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVE 563

Query: 515 GHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMP 549
             VH F      H  + +I+  ++ ++   R+ GY+P
Sbjct: 564 EEVHEFTVFDQSHPKSDDIYKMIDRLVQDLRQVGYVP 600


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 178/538 (33%), Positives = 285/538 (52%), Gaps = 75/538 (13%)

Query: 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------G 223
           L + +VQ G    A KVFDE  E+N    V  WN +++G  +  +    + LF      G
Sbjct: 29  LINGHVQHGDLDSAIKVFDEMLERN----VATWNAMVSGLIQFEFNENGLFLFREMHELG 84

Query: 224 MMPK--------------------KNVASWV-------------SLIDGFMRKGDLKKAG 250
            +P                     K V ++V             SL   +M+ G L +  
Sbjct: 85  FLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGE 144

Query: 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310
           ++ + M  + VV+W  +I G +QNG  E  L ++  M  +G+R +  T+VS +S+ A++ 
Sbjct: 145 KVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELA 204

Query: 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
            L  G ++H            A+ ++L+ MY+KCG +E +     + +  D + W++MI 
Sbjct: 205 TLFQGQQIHAEAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDCEHPDSVLWSSMIA 264

Query: 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430
               HGR E+A+  F++M   G   +   FL++L AC ++G  +  + FF  M   Y ++
Sbjct: 265 AYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEKGMGFFKLMVEKYGLK 324

Query: 431 PSVKHHTVVVNLLSRVGQDSQG-------------------------YQNSQ---NSFTK 462
           P ++H+T VV+LL R G   +                          ++N+     +  +
Sbjct: 325 PRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEE 384

Query: 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522
           +L+L P+  ++YVLLSNI+A+  RWKDV++VRT M+ R++KK+PG S++EV   V +F  
Sbjct: 385 ILRLNPQDSATYVLLSNIHASAKRWKDVSKVRTTMRDRNVKKEPGVSWLEVKNRVFQFSM 444

Query: 523 G--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALAFGL 579
           G   H +++EI   L+++M   + +GY+P T  V H+   EEKE +L  HSEKLA+AFGL
Sbjct: 445 GDKSHPMSEEIDLYLKELMEEMKLRGYVPDTATVFHDTDSEEKENSLVNHSEKLAIAFGL 504

Query: 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +   PG+ I+++K L IC DCH  +K  S I+ REI++RDT RFH+FK G CSC DYW
Sbjct: 505 MNIPPGSPIRVMKNLRICSDCHVAIKLISDINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/196 (30%), Positives = 108/196 (55%)

Query: 211 KIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMING 270
           K+G +++A+  F  MP +N+ S   LI+G ++ GDL  A ++F++M E+ V +W AM++G
Sbjct: 4   KMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSG 63

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
             Q    E  L +F +M + G   ++FT+ S L  CA + A  AG +VH Y+    +   
Sbjct: 64  LIQFEFNENGLFLFREMHELGFLPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFN 123

Query: 331 GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390
             +G++L  MY K G++     V    + ++++ W  +I G A +G +E  +  +  M  
Sbjct: 124 LVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKM 183

Query: 391 SGTEPDGTVFLAILTA 406
           SG  PD    ++++++
Sbjct: 184 SGLRPDKITLVSVISS 199



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 76/365 (20%), Positives = 140/365 (38%), Gaps = 86/365 (23%)

Query: 48  RQIHAQIILH----NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
           +Q+HA ++ +    NL   S +    + S SL +       +      +N+  +N LI G
Sbjct: 109 KQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGE----GEKVIKAMRIRNVVAWNTLIAG 164

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            A+N HF+  +  +  M    +RP+++T   V  S A L+ L  G+ +H   +K+G    
Sbjct: 165 NAQNGHFEGVLDLYNMMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIKAGANSA 224

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
             V   L  MY + G    + K   +       +SVL                       
Sbjct: 225 VAVLSSLISMYSKCGCLEDSMKALLDCEH---PDSVL----------------------- 258

Query: 224 MMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV----VSWTAMINGFSQNGEAEK 279
                    W S+I  +   G  ++A  LFEQM ++G+    V++ +++   S NG  EK
Sbjct: 259 ---------WSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKEK 309

Query: 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TAL 337
            +  F  M++                                     +GLK  +   T +
Sbjct: 310 GMGFFKLMVE------------------------------------KYGLKPRLEHYTCV 333

Query: 338 VDMYAKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           VD+  + G + EA +++     E D++ W  ++    IH   + A +  ++++    +  
Sbjct: 334 VDLLGRSGCLDEAEAMIRSMPLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDS 393

Query: 397 GTVFL 401
            T  L
Sbjct: 394 ATYVL 398


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 184/577 (31%), Positives = 296/577 (51%), Gaps = 69/577 (11%)

Query: 38  IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIF 97
           +H   +   + QIHAQ++  NL     +  +LI++ SL + +  A+++F+H    N+H++
Sbjct: 28  LHKCTNLDSVNQIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLY 87

Query: 98  NVLIRGLAENSHFQSC-ISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           N +IR  A NS  +S   + F  M +  + P+  TYPF+ K+ +  S L L R +H  + 
Sbjct: 88  NSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVE 147

Query: 157 KSGVEYDAFVRVHLADMYVQLGKT--RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           K G   D FV   L D Y + G     GA  +F    E++    V+ WN +I G  + G 
Sbjct: 148 KIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERD----VVTWNSMIGGLVRCGE 203

Query: 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
           L+ A +LF  MP +++ SW +++DG+ + G++  A ELFE+MP + +VSW+ M+ G+S+ 
Sbjct: 204 LQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIVSWSTMVCGYSKG 263

Query: 275 GE--------------------------AEKALA-----MFFQMLDAGVRANDFTVVSAL 303
           G+                          AEK LA     ++ +M +AG+R +D  ++S L
Sbjct: 264 GDMDMARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSIL 323

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF-GETKEKDL 362
           +ACA+ G L  G R+H  +    F     +  A +DMYAKCG ++AA  VF G   +KD+
Sbjct: 324 AACAESGMLGLGKRIHASMRRWRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDV 383

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDS 422
           ++W +MI G A+HG  E+A++ F  M+  G EPD   F+ +L AC ++G V     +F S
Sbjct: 384 VSWNSMIQGFAMHGHGEKALELFSWMVQEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYS 443

Query: 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------Q 454
           M   Y I P V+H+  +++LL R G   + +                             
Sbjct: 444 MEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFMLLRSMPMEPNAIILGTLLNACRMHNDVD 503

Query: 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514
            ++    +L +L+P  P +Y LLSNIYA  G W +VA VR  M+    +K  G S IEV 
Sbjct: 504 LARAVCEQLFKLEPSDPGNYSLLSNIYAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVE 563

Query: 515 GHVHRFEA--GGHKLAKEIHSKLEDIMAGAREQGYMP 549
             VH F      H  + +I+  ++ ++   R+ GY+P
Sbjct: 564 EEVHEFTVFDQSHPKSDDIYQMIDRLVQDLRQVGYVP 600


>gi|326515584|dbj|BAK07038.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 594

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 189/584 (32%), Positives = 299/584 (51%), Gaps = 98/584 (16%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           + LG+ +H   +K G +    +   L  +Y + G      + F  TP+KN    V+ W  
Sbjct: 11  IDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKN----VITWTT 66

Query: 205 LINGCSKI-GYLRKAVELF------GMMPKK-NVASWVSLIDG----------------- 239
           +I+ C++   YL   + LF      G+MP +  + S +SL                    
Sbjct: 67  MISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLCGARLDMSLGKQVQAFCYKV 126

Query: 240 ---------------FMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK----- 279
                          ++RKG+  +A  LFE+M    +++W AMI+G++Q  ++ K     
Sbjct: 127 GCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHA 186

Query: 280 ------ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH-NYISCNDFGLKGA 332
                 AL +F  ++ + ++ + FT  S LS C+ + ALE G ++H N I          
Sbjct: 187 RSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLS-DVV 245

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           + +ALV+MY KCG+IE A+  F E   +  +TWT+MI G + HGR + AIQ F+ M+ SG
Sbjct: 246 VNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYSQHGRSQDAIQLFEDMVLSG 305

Query: 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452
             P+   F+++L+AC Y+G V+ A  +FD MR +Y IEP V H+  +V++  R+G+    
Sbjct: 306 ARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDA 365

Query: 453 YQ-------------------------NSQNSF---TKLLQLKPKHPSSYVLLSNIYAAE 484
           +                          N + +F    +LL+LKPK   +YVLL N+Y + 
Sbjct: 366 FSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLELKPKVIETYVLLLNMYIST 425

Query: 485 GRWKDVARVRTLMQRRSIK--KDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGA 542
           GRW+DVARVR L +   +   +D  W  I    +  R +   H  A E++  LE+++  A
Sbjct: 426 GRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDMTHPQATELYQLLENLLEKA 485

Query: 543 REQGYMP--GTEWVLHNIKEEKEE----ALGC----HSEKLALAFGLIQTTPGTTIKIVK 592
           +  GY P      +L + KE  ++    A G     HSE+LA+A GL++T PG T+++ K
Sbjct: 486 KAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERLAVALGLLETPPGATVRVTK 545

Query: 593 KLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
            +T+C DCHS +KY S ++ REIV+RD+ R H FKDG CSC D+
Sbjct: 546 NITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSCGDF 589



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 111/255 (43%), Gaps = 29/255 (11%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAE------------NSHFQSCISHFVFMLRLSVRP 127
           D A+ +F+     ++  +N +I G A+            +  FQ+ +  F  ++R  ++P
Sbjct: 149 DEAMRLFEEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQA-LKLFRDLVRSELKP 207

Query: 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
           +  T+  +    +++  L  G  +H   +K+G   D  V   L +MY + G    A K F
Sbjct: 208 DLFTFSSILSVCSAMMALEQGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAF 267

Query: 188 DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSLIDGFMRK 243
            E P +      + W  +I+G S+ G  + A++LF  M     + N  ++VSL+      
Sbjct: 268 VEMPTRTP----VTWTSMISGYSQHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYA 323

Query: 244 GDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
           G +++A   F+ M      E  V  +  M++ F + G  + A +   +    G   N+  
Sbjct: 324 GLVEEAERYFDMMRNEYHIEPLVDHYGCMVDMFVRLGRLDDAFSFIKR---TGFEPNEAI 380

Query: 299 VVSALSACAKVGALE 313
             S ++ C   G +E
Sbjct: 381 WSSLVAGCRSHGNME 395



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 52/106 (49%), Gaps = 1/106 (0%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           LSAC+    ++ G +VH Y          ++G +L  +Y K G++E+    F  T +K++
Sbjct: 2   LSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDLESGLRAFKGTPDKNV 61

Query: 363 LTWTAMIWGLAIHGRY-EQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +TWT MI   A    Y +  +  F  M+  G  P+     ++++ C
Sbjct: 62  ITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSLC 107


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 197/620 (31%), Positives = 293/620 (47%), Gaps = 109/620 (17%)

Query: 121 LRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179
            RL++  N  L  PF+       SL S G+ LHCL+V SG   D F+  HL  MY +LG 
Sbjct: 36  FRLNIFTNTSLFTPFIQSCTTRQSLPS-GKQLHCLLVVSGFSSDKFICNHLMSMYSKLGD 94

Query: 180 TRGAF-------------------------------KVFDETPEKNKSESVLLWNVLING 208
              A                                KVFDE P++     +  WN +I G
Sbjct: 95  FPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRK----LTTWNAMIAG 150

Query: 209 CSKIGYLRKAVELF------GMMPKKNVASWV---------------------------- 234
             +  +  + + LF      G  P +     V                            
Sbjct: 151 LIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELD 210

Query: 235 -----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
                SL   +MR G L+    +   MP + +V+W  +I G +QNG  E  L ++  M  
Sbjct: 211 LVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKI 270

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           +G R N  T V+ LS+C+ +     G ++H            A+ ++L+ MY+KCG +  
Sbjct: 271 SGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLISMYSKCGCLGD 330

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACW 408
           A+  F E +++D + W++MI     HG+ ++AI+ F  M   +  E +   FL +L AC 
Sbjct: 331 AAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 390

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG---------------- 452
           +SG     L  FD M   Y  +P +KH+T VV+LL R G   Q                 
Sbjct: 391 HSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIW 450

Query: 453 ------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                        + +Q  F ++LQ+ P   + YVLL+N++A+  RW+DV+ VR  M+ +
Sbjct: 451 KTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDK 510

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
           ++KK+ G S+ E  G VH+F+ G      +KEI+S L+++    + +GY P T  VLH++
Sbjct: 511 NVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDM 570

Query: 559 -KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            +EEKE  L  HSEKLA+AF L+    G  I+I+K L +C DCH   KY S I  REI L
Sbjct: 571 DEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITL 630

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD +RFH+F +G CSC DYW
Sbjct: 631 RDGSRFHHFINGKCSCGDYW 650



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 160/367 (43%), Gaps = 50/367 (13%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    + L  +N +I GL +    +  +S F  M  L   P+  T   V    A 
Sbjct: 129 ARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLGFSPDEYTLGSVFSGSAG 188

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L  +S+G+ +H   +K G+E D  V   LA MY++ GK +    V    P +N    ++ 
Sbjct: 189 LRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRN----LVA 244

Query: 202 WNVLI-----NGCSK-IGYLRKAVELFGMMPKK----NVASWVS---------------- 235
           WN LI     NGC + + YL K +++ G  P K     V S  S                
Sbjct: 245 WNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAI 304

Query: 236 -------------LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                        LI  + + G L  A + F +  ++  V W++MI+ +  +G+ ++A+ 
Sbjct: 305 KIGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIE 364

Query: 283 MFFQMLD-AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVD 339
           +F  M +   +  N+   ++ L AC+  G  + G+ + + +    +G K  +   T +VD
Sbjct: 365 LFNTMAEQTNMEINEVAFLNLLYACSHSGLKDKGLELFDMM-VEKYGFKPGLKHYTCVVD 423

Query: 340 MYAKCGNIEAASLVFGETKEK-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           +  + G ++ A  +      K D++ W  ++    IH   E A + FK+++    +P+ +
Sbjct: 424 LLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQ--IDPNDS 481

Query: 399 VFLAILT 405
               +L 
Sbjct: 482 ACYVLLA 488



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/269 (23%), Positives = 119/269 (44%), Gaps = 17/269 (6%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIH   I + L     + + L      +  +     +      +NL  +N LI G A+N
Sbjct: 196 QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 255

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              ++ +  +  M     RPN++T+  V  S + L++   G+ +H   +K G      V 
Sbjct: 256 GCPETVLYLYKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVV 315

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227
             L  MY + G    A K F E  ++++    ++W+ +I+     G   +A+ELF  M +
Sbjct: 316 SSLISMYSKCGCLGDAAKAFSEREDEDE----VMWSSMISAYGFHGQGDEAIELFNTMAE 371

Query: 228 K-----NVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEA 277
           +     N  ++++L+      G   K  ELF+ M EK     G+  +T +++   + G  
Sbjct: 372 QTNMEINEVAFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCL 431

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSAC 306
           ++A A+   M    ++ +     + LSAC
Sbjct: 432 DQAEAIIRSM---PIKTDIVIWKTLLSAC 457


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 209/666 (31%), Positives = 316/666 (47%), Gaps = 103/666 (15%)

Query: 9   LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQ 68
           LT   AP    K    P     +  ++S +    S + L Q+HA  +   L A   + T+
Sbjct: 6   LTATPAPLLPAKPKSPPPQ---QHPVLSHLPHCTSLRTLAQLHAAAVKAGLAAHPALVTR 62

Query: 69  LISSASLHKS----IDYALSIFDHFT-PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL 123
           L++  +   +    + YA  +FD    P +   +N L+RG A +S+  S  S     +R+
Sbjct: 63  LLTLCTGPDAGPAHLAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSS--SEAAAAVRV 120

Query: 124 SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGA 183
            VR                            +++ GV  D +        +V L K   A
Sbjct: 121 FVR----------------------------MLEEGVAPDTYT-------FVSLLKACAA 145

Query: 184 FKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243
            +  +E  + +     L       G +   Y+R                  +LI+ +   
Sbjct: 146 ARAGEEGRQAHALAVKL-------GAADHDYVRP-----------------TLINMYAEC 181

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           GD + A  +F       VVS+ AMI    ++    +AL +F +M   G++    TV+S L
Sbjct: 182 GDARAARVMFGGTDGGCVVSYNAMIAAAVRSSRPGEALVLFREMQGKGLKPTSVTVISVL 241

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           SACA +GALE G  VH+Y+     G    + TAL+DMYAKCG++E A  VF   + KD  
Sbjct: 242 SACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQ 301

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423
            W+ MI   A HG   +AI  F++M   G +PD   FL +L AC +SG V   L +FD M
Sbjct: 302 AWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQYFDDM 361

Query: 424 RFDYFIEPSVKHHTVVVNLLSRVGQDSQGY----------------------------QN 455
           + D+ I P +KH+  V +LL+R GQ  + Y                            + 
Sbjct: 362 K-DHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDFEL 420

Query: 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNG 515
            +  F ++L+L   H   YV+ SN+ A  G W+++  VR LM  + + K PG S IE++ 
Sbjct: 421 GKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLMSEKGVVKVPGCSSIEIDN 480

Query: 516 HVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH--NIKEEKEEALGCHSE 571
            VH F AG   H  ++E    +++++   +  GY+P T  V H    +EEK  +L  HSE
Sbjct: 481 TVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVFHVEMGEEEKAISLKYHSE 540

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTC 630
           KLA+AFGL+ T PG T+++VK L +C DCHS+ K  S +  R I+LRD  RFH+F++G C
Sbjct: 541 KLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEEGIC 600

Query: 631 SCRDYW 636
           SC DYW
Sbjct: 601 SCGDYW 606


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 176/541 (32%), Positives = 282/541 (52%), Gaps = 67/541 (12%)

Query: 163  DAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NKSESVLLWNVLINGCS----------- 210
            + FV   L D Y +        ++FDE PE+ N S +V++     N C+           
Sbjct: 468  NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527

Query: 211  KIGYLRKAVE------LFGMMPKKNVASWV-----------------SLIDGFMRKGDLK 247
            K+G+ R+ +       + G +P  ++   +                 +LID + + G L 
Sbjct: 528  KLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLD 587

Query: 248  KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
             A   F    EK  +SWTA+I G+ QNG+ E+AL +F  M  AG+R +  T  S + A +
Sbjct: 588  AAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS 647

Query: 308  KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
             +  +  G ++H+Y+  + +      G+ LVDMYAKCG ++ A   F E  E++ ++W A
Sbjct: 648  SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNA 707

Query: 368  MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
            +I   A +G  + AI+ F+ M++ G  PD   FL++L AC ++G     + +F  M+  Y
Sbjct: 708  VISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQY 767

Query: 428  FIEPSVKHHTVVVNLLSRVGQDSQ---------------------------GYQN-SQNS 459
             I P  +H+  V++ L RVG  SQ                           G Q  ++ +
Sbjct: 768  SISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVA 827

Query: 460  FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
              KL  ++P   + YV+LSNIYA  G+W+D A V+ +M+ R ++K+ G+S++E+   ++ 
Sbjct: 828  ADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIYS 887

Query: 520  FEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALA 576
            F +      +  EI  +L+ +     +QGY P     LH +  E K E+L  HSE+LA+A
Sbjct: 888  FASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAIA 947

Query: 577  FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDY 635
            F L+ T  GT I+I+K LT C DCH+++K  SKI  R+I++RD+ RFH+FKDG CSC DY
Sbjct: 948  FALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGDY 1007

Query: 636  W 636
            W
Sbjct: 1008 W 1008



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 153/335 (45%), Gaps = 23/335 (6%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           +QIHAQ++L  L +   +   LI   S    +D A S F + + K+   +  LI G  +N
Sbjct: 555 KQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQN 614

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
              +  +  F  M R  +RP+R T+  + K+ +SL+++ LGR LH  +++SG +   F  
Sbjct: 615 GQHEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSG 674

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF-GMMP 226
             L DMY + G    A + FDE PE+N     + WN +I+  +  G  + A+++F GM+ 
Sbjct: 675 SVLVDMYAKCGCLDEALRTFDEMPERNS----ISWNAVISAYAHYGEAKNAIKMFEGMLH 730

Query: 227 ---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGEAE 278
                +  +++S++      G   +  + F  M  +  +S     +  +I+   + G   
Sbjct: 731 CGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFS 790

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           +   M  +M     +A+     S L +C   G  E      + +    FG++    T  V
Sbjct: 791 QVQKMLVEM---PFKADPIIWTSILHSCRIHGNQELARVAADKL----FGMEPTDATPYV 843

Query: 339 ---DMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
              ++YA+ G  E A+ V    +++ +   +   W
Sbjct: 844 ILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSW 878



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 90/186 (48%), Gaps = 17/186 (9%)

Query: 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
           G+L +A  +F  MP KN+ S   ++  +   GDL  A  LF   P +   +WT M+   +
Sbjct: 271 GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 330

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALS--ACAKVG----ALEAGVRVHNYISCND 326
             G    AL++F  ML  GV  +  TV + L+   C        A++ G+  H ++ CN 
Sbjct: 331 AAGRTSDALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHVFV-CN- 388

Query: 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386
                     L+D Y K G + AA  VF E  +KD +T+ AM+ G +  G + QA+Q F 
Sbjct: 389 ---------TLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFA 439

Query: 387 KMMYSG 392
            M  +G
Sbjct: 440 AMRRAG 445



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 33/69 (47%)

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++  Y+  G++ AA  +F  +  ++  TWT M+   A  GR   A+  F+ M+  G  PD
Sbjct: 294 ILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLGEGVIPD 353

Query: 397 GTVFLAILT 405
                 +L 
Sbjct: 354 RVTVTTVLN 362


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 177/563 (31%), Positives = 289/563 (51%), Gaps = 76/563 (13%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  GR +H  +VK+      ++   L  +YV+ G    A  V D  PE+N    V+ W  
Sbjct: 57  LGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERN----VVSWTA 112

Query: 205 LINGCSKIGYLRKAVELF-----------------------------------GMMPKKN 229
           +I+G S+ G   +A+ELF                                    ++ K N
Sbjct: 113 MISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTN 172

Query: 230 VASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
             S +    SL+D + + G++++A ++F+ +PE+  VS TA+I+G++Q G  ++AL +F 
Sbjct: 173 FESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFR 232

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           Q+  +G++ N  T  + L++ + + +L  G +VH  I   +      +  +L+DMY+KCG
Sbjct: 233 QLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCG 292

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            +  +  VF    ++  ++W AM+ G   HG  ++ +Q F+ M     +PD    LA+L+
Sbjct: 293 KLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLS 351

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS------ 459
            C + G V   L+ FD +  +      + H+  V++LL R GQ  +     ++       
Sbjct: 352 GCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTP 411

Query: 460 ----------------------FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
                                   KLL ++P +  +YV+LSNIYAA G WKDV RVR LM
Sbjct: 412 AIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLM 471

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
              ++ K+P  S+I ++  +H F +    H   K+I++K++++    +  G++P    VL
Sbjct: 472 LENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVL 531

Query: 556 HNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H++ +E KE  L  HSEKLA+ FGL+ T PG TI+++K L IC DCH+  K+ SK+  RE
Sbjct: 532 HDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGRE 591

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           I LRD  RFH  KDG C+C DYW
Sbjct: 592 ISLRDKNRFHLLKDGACTCGDYW 614



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 163/370 (44%), Gaps = 48/370 (12%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+HA ++         + T+LI       ++D A ++ D    +N+  +  +I G +++
Sbjct: 61  RQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQS 120

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F+ MLR   + N  T   V  S      +     +H L+VK+  E   FV 
Sbjct: 121 GRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVG 180

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L DMY + G  + A KVFD  PE++          +I+G +++G   +A++LF     
Sbjct: 181 SSLLDMYGKSGNIQEARKVFDMLPERDTVSC----TAIISGYAQLGLDDEALDLFRQLYS 236

Query: 223 ------------------------------GMMPKKNVASWV----SLIDGFMRKGDLKK 248
                                         G++ +K +  ++    SLID + + G L  
Sbjct: 237 SGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLY 296

Query: 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308
           +  +F+ MP++  +SW AM+ G+ ++G  ++ + +F  M +  V+ +  T+++ LS C+ 
Sbjct: 297 SRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSH 355

Query: 309 VGALEAGVRVHNYI--SCNDFGLKGAIGTALVDMYAKCGNIEAA-SLVFGETKEKDLLTW 365
            G ++ G+ + + I    N     G  G  ++D+  + G ++ A  L+     E     W
Sbjct: 356 GGLVDEGLDIFDLIVKEQNAVIHIGHYG-CVIDLLGRSGQLQKALDLIEHMPFEPTPAIW 414

Query: 366 TAMIWGLAIH 375
            +++    +H
Sbjct: 415 GSLLGACRVH 424



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 149/341 (43%), Gaps = 37/341 (10%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           +N  T   +++      S +Q+ Q+H+ ++  N  +   + + L+       +I  A  +
Sbjct: 140 ANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKV 199

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145
           FD    ++      +I G A+       +  F  +    ++ N +T+  +  S++ L+ L
Sbjct: 200 FDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLTSLSGLASL 259

Query: 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205
           + G+ +H LI++  + +   ++  L DMY + GK   + +VFD  P++    S + WN +
Sbjct: 260 NYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQR----SAISWNAM 315

Query: 206 INGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELF-----EQMP 257
           + G  + G  ++ V+LF  M    K +  + ++++ G    G + +  ++F     EQ  
Sbjct: 316 LMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQNA 375

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
              +  +  +I+   ++G+ +KAL +   M         F    A+      G+L    R
Sbjct: 376 VIHIGHYGCVIDLLGRSGQLQKALDLIEHM--------PFEPTPAIW-----GSLLGACR 422

Query: 318 VHNYISCNDFGLKGAIGTALVDM-------YAKCGNIEAAS 351
           VH  +S  +      +   L+DM       Y    NI AA+
Sbjct: 423 VHINVSVGE-----VVAQKLLDMEPGNAGNYVILSNIYAAA 458



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 67/118 (56%), Gaps = 2/118 (1%)

Query: 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349
           A  R +D+   +A++AC +  AL  G +VH ++    +     + T L+ +Y +CG ++ 
Sbjct: 37  ADARFHDYD--AAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDD 94

Query: 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           A  V     E+++++WTAMI G +  GR+ +A++ F +M+ +G + +      +LT+C
Sbjct: 95  ARNVLDGMPERNVVSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSC 152


>gi|242047514|ref|XP_002461503.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
 gi|241924880|gb|EER98024.1| hypothetical protein SORBIDRAFT_02g003670 [Sorghum bicolor]
          Length = 786

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 196/572 (34%), Positives = 287/572 (50%), Gaps = 80/572 (13%)

Query: 80  DYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139
           ++ L +  H  P  L +F  L R    N H       F F+L  S+  +    P V+ S+
Sbjct: 96  NHLLRVLPH--PLPLRLFPRLPR---RNPH------SFTFLLA-SLSNHLDADPAVAVSI 143

Query: 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199
           AS  +   G  +H L VK+G   D +VR  L   Y   G      KVFDE P        
Sbjct: 144 ASRLM---GAHVHALAVKAGAAGDLYVRNALIHFYGVCGDVAAMRKVFDELP-------- 192

Query: 200 LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259
                L+                     ++V +W +++ G++R G +  A E+F+ MP +
Sbjct: 193 -----LV---------------------RDVVTWNAVLAGYVRAGMVGVAREVFDGMPMR 226

Query: 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319
             VSW+ ++ G+ + GE E AL +F  M+  GV+AN+  +V+ALSA A++G LE G  VH
Sbjct: 227 DEVSWSTVVGGYVKEGELEVALGVFKNMVVQGVKANEAAIVTALSAAAQLGLLEQGKFVH 286

Query: 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
             I      +   +G ALVDMY+KCG++ AA  VF     +D+  W +MI GLA HG   
Sbjct: 287 EVIKRAGVAMSMNLGAALVDMYSKCGSVAAAKEVFDAMPWRDVFAWNSMICGLATHGLGH 346

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
            A+Q F+K +  G  P    F+ +L AC  +G V     +F  M   Y IE  ++H+  +
Sbjct: 347 DAVQLFEKFVSEGFCPTNITFVGVLNACSRTGLVDEGRWYFKLMAEKYGIESEMEHYGCM 406

Query: 440 VNLLSRVG--QDS----QGYQNSQNSF----------------------TKLLQLKPKHP 471
           V+LLSR G  Q++    +G     +                         KL++L P H 
Sbjct: 407 VDLLSRAGLVQEAIELIEGMHIPPDPVLWGTVLSACKRHGLVDLGITVGNKLIELDPAHD 466

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAK 529
             YVLL++IYA   +W +V +VR LM  R   K  GWS +E +G VH+F  G   HK + 
Sbjct: 467 GYYVLLASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMDHKDSV 526

Query: 530 EIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTI 588
           +I++ L  I     E GY+P    VLH+I  EEK  A+  HSE+LA+A+G I    G+ I
Sbjct: 527 QIYNMLCMIDRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPI 586

Query: 589 KIVKKLTICGDCHSLMKYASKISQREIVLRDT 620
           +IVK L++CGDCH   K  +K+  REI++RD 
Sbjct: 587 RIVKNLSVCGDCHEFSKMVTKVFGREIIVRDA 618


>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
 gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
          Length = 509

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 178/540 (32%), Positives = 287/540 (53%), Gaps = 74/540 (13%)

Query: 43  STKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
           S K L++IHAQ+I   L     A+SR+     S A     I+YA  +F      NL ++N
Sbjct: 8   SMKDLQKIHAQLIKTGLAKDTIAASRVLAFCTSPAG---DINYAYLVFTQIRNPNLFVWN 64

Query: 99  VLIRGLAENSHFQSCISHFVFMLRLS--VRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
            +IRG +++S   + IS F+ M+  S   +P RLTYP V K+ A L L   G  LH  ++
Sbjct: 65  TIIRGFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRVI 124

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K G+E D F++  + +MYV                                     G+L 
Sbjct: 125 KLGLENDQFIQNTILNMYVN-----------------------------------CGFLG 149

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           +A  +F      +V +W ++I G  + G++ K+  LF++M  +  VSW +MI+G+ + G 
Sbjct: 150 EAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGR 209

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
             +A+ +F +M + G++ ++FT+VS L+ACA +GAL  G  +H+YI  N+F L   + TA
Sbjct: 210 FFEAMELFSRMQEEGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITA 269

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           ++DMY+KCG+I+ A  VF    +K L  W ++I GLA+ GR  +A++ F K+  S  +PD
Sbjct: 270 IIDMYSKCGSIDKALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPD 329

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG--------- 447
              F+ +LTAC ++G V  A ++F  M   Y IEPS+KH++ +V++L R G         
Sbjct: 330 HVSFIGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELI 389

Query: 448 ----------------QDSQGYQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
                              + Y N   ++ +  ++ +L P   SS++LLSN+YAA   ++
Sbjct: 390 KSMPVNPDAIIWGSLLSSCREYGNIEMAKQAAKRVNELDPNESSSFILLSNVYAAHNHFE 449

Query: 489 DVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQG 546
           +    R  ++ + + K+PG S IEVNG VH F AGG  H  +K+I+  L+D+    +E G
Sbjct: 450 EAIEQRLSLKEKQMDKEPGCSLIEVNGEVHEFVAGGRLHPRSKDIYHALDDLGLTLKEMG 509



 Score = 46.6 bits (109), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 92/202 (45%), Gaps = 17/202 (8%)

Query: 24  KPSNNITETHIISLIHSSNSTKQLRQ---IHAQIILHNLFASSRITTQLISSASLHKSID 80
           KPS    E  ++SL+++      LRQ   IH  I+ +N   +S + T +I   S   SID
Sbjct: 226 KPS----EFTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSID 281

Query: 81  YALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140
            AL +F     K L  +N LI GLA +      +  F  +   +++P+ +++  V  +  
Sbjct: 282 KALQVFKSAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSFIGVLTACN 341

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV- 199
              ++   +  + L++    + +  ++ H + M   LG+      + +E  E  KS  V 
Sbjct: 342 HAGMVDRAKD-YFLLMSETYKIEPSIK-HYSCMVDVLGRA----GLLEEAEELIKSMPVN 395

Query: 200 ---LLWNVLINGCSKIGYLRKA 218
              ++W  L++ C + G +  A
Sbjct: 396 PDAIIWGSLLSSCREYGNIEMA 417


>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 284/513 (55%), Gaps = 42/513 (8%)

Query: 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220
           ++   +R ++ +M  ++     A   ++E  E+        +  L+  C+++  +R+  +
Sbjct: 100 DFKTMIRGYVNEMSFEV-----ALCFYNEMMERGIEPDNFTYPCLLKACTRLKAIREGKQ 154

Query: 221 LFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
           + G + K  + + V    SLI+ + R G+++ +  +FE++  K   SW++M +     G 
Sbjct: 155 IHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVFEKLEFKSAASWSSMFSACVGMGM 214

Query: 277 AEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335
             + L +F +M  +  ++A +  +VSALSACA  GAL  G+ +H ++  N   L   + T
Sbjct: 215 WSECLMLFREMCRETNLKAEESGMVSALSACANTGALNLGMSIHGFLLRNISELNIIVKT 274

Query: 336 ALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395
           +LVDMY KCG I+ A  +F + ++++ LT++AMI G A+HG  E A++ F +M+  G EP
Sbjct: 275 SLVDMYVKCGCIDNALHIFQKMEKRNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEP 334

Query: 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455
           D  V++++L AC +SG VK     F  M  +  +EP+ +H+  +V+LL R G   +  + 
Sbjct: 335 DHVVYVSLLNACSHSGLVKEGRRVFGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALET 394

Query: 456 SQN-----------SF-----------------TKLLQLKPKHPSSYVLLSNIYAAEGRW 487
            Q+           SF                  +LL+L   +P  Y+L+SN+Y+    W
Sbjct: 395 IQSIPIEQNDVVWRSFLSQCRVHQNIELGQIAAQELLKLCSHNPGDYLLISNMYSQAHMW 454

Query: 488 KDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQ 545
            DVAR RT +  + +K+ PG+S ++V G  HRF  +   H   KEI+  L  +    + +
Sbjct: 455 DDVARSRTEIAIKGLKQTPGFSTVKVKGKTHRFVSQDRSHPQCKEIYKMLHQMEWQLKFE 514

Query: 546 GYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLM 604
           GY P    +L N+ +EEK+E L  HS+K+A+AF L+ T PG+ IKI + L +C DCH+  
Sbjct: 515 GYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFALLYTPPGSIIKIARNLRMCSDCHTYT 574

Query: 605 KYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           K  S I +REIV+RD  RFH FK GTCSC+DYW
Sbjct: 575 KKISMIYEREIVVRDRNRFHLFKGGTCSCKDYW 607


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 208/668 (31%), Positives = 313/668 (46%), Gaps = 95/668 (14%)

Query: 44  TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRG 103
            + +R  H  +I HN          LI+       +  A  +FD    +N    N+L+ G
Sbjct: 35  AQMIRAAHFDVIQHN---------HLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSG 85

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            A        ++    +       N         + A +    +GR  H   VKSG++  
Sbjct: 86  YASAGRHSDALA---LLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEH 142

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
            +V   +  MY Q      A KVF    E      +  +N +ING   +G    ++ +  
Sbjct: 143 PYVCNAVLHMYCQCAHVEDAVKVF----ENVSGFDIFAFNSMINGFLDLGEFDGSIRIVR 198

Query: 224 MMP---------------------------------------KKNVASWVSLIDGFMRKG 244
            M                                        ++NV    +L+D + +  
Sbjct: 199 SMVGEVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCD 258

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
             + A   FE +PEK VVSWTA++  ++QN   E AL +F  +   GVR N+FT   AL+
Sbjct: 259 CARDAHSAFEVLPEKNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALN 318

Query: 305 ACAKVGALEAGVRVHNYISCNDF--GLKGAIGT--ALVDMYAKCGNIEAASLVFGETKEK 360
           +CA + AL+ G    N +S +    G  GA+    AL++MY+K G+I  A  VF     +
Sbjct: 319 SCAGLAALKNG----NALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWR 374

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420
           D+++W ++I G A HG   +A+  F  M+ +   P    F+ +L AC   G V   L + 
Sbjct: 375 DVVSWNSVIIGYAHHGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYL 434

Query: 421 DSMRFDYFIEPSVKHHTVVVNLLSRVGQ-------------------------DSQGYQN 455
           + M  +  I+P  +H+T +V LL R G+                           Q Y+N
Sbjct: 435 NIMMKEMGIKPGREHYTCMVGLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKN 494

Query: 456 ---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
                    ++LQLKP    +YVLLSN+YA   RW  V +VR LM+ R ++K+PG S+I+
Sbjct: 495 YGLGHRVAEQILQLKPNDVGTYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQ 554

Query: 513 VNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCH 569
           V   VH F  E   HK   +I  KL++++   +  GY+P    VLH+++ E+KEE L  H
Sbjct: 555 VGSEVHVFTSEDKNHKWINQITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYH 614

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEK+ALAFGLI +  G TI+I+K L IC DCH  +K  S +++R+IV+RDT RFH   DG
Sbjct: 615 SEKMALAFGLIHSPEGETIRIMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDG 674

Query: 629 TCSCRDYW 636
            CSC DYW
Sbjct: 675 VCSCDDYW 682



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 112/258 (43%), Gaps = 16/258 (6%)

Query: 35  ISLIHSSNSTKQLR---QIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           ++++    STK+L    Q+HAQ +   L  +  + + L+           A S F+    
Sbjct: 213 VAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPE 272

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
           KN+  +  ++    +N  F+  +  F+ +    VRPN  TY     S A L+ L  G  L
Sbjct: 273 KNVVSWTAVMTAYTQNERFEDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNAL 332

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
               +K+G      V   L +MY + G    A++VF   P ++    V+ WN +I G + 
Sbjct: 333 SASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRD----VVSWNSVIIGYAH 388

Query: 212 IGYLRKAVELF-GMMPKKNVASWVSLIDGFMRKGDLKKAGE----LFEQMPEKGVVS--- 263
            G  R+A+ +F  M+  + V S+V+ +   +    L    E    L   M E G+     
Sbjct: 389 HGLAREAMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGRE 448

Query: 264 -WTAMINGFSQNGEAEKA 280
            +T M+    + G  ++A
Sbjct: 449 HYTCMVGLLCRAGRLDEA 466


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/541 (33%), Positives = 278/541 (51%), Gaps = 75/541 (13%)

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCS-----KIGYLRKAV 219
           FV   L  MY + G    A ++FD  PE+N    V+ W  ++   +     K   LR  V
Sbjct: 116 FVSNSLVSMYAKFGLLDDALRLFDRMPERN----VVTWTTVVAALANADGRKEEALRFLV 171

Query: 220 ELF--GMMPKKNVASWV------------------------------SLIDGFMRKGDLK 247
            ++  G+ P     S V                              SLID +M+ GDL 
Sbjct: 172 AMWRDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLD 231

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
               +F++M  + +V W ++I GF+Q+G+   A+ +F +M DAG  AN  T+ S L AC 
Sbjct: 232 GGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACT 291

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367
            +  LEAG +VH ++   +  L   +  AL+DMY KCG++E A  +F    ++D+++W+ 
Sbjct: 292 GMVMLEAGRQVHAHVLKYERDL--ILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWST 349

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427
           MI GLA +G+  +A++ F  M   G  P+    + +L AC ++G V+    +F SM+  +
Sbjct: 350 MISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLF 409

Query: 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------S 459
            I+P  +HH  +V+LL R G+  +  +  ++                            +
Sbjct: 410 GIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYA 469

Query: 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHR 519
             ++L+L+P    + VLLSN YA   +W D  +    M+ R +KK+PG S+IE+  HVH 
Sbjct: 470 AREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKHVHV 529

Query: 520 FEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIK-EEKEEALGCHSEKLALA 576
           F AG   H  +  I  +L  ++      GY+P TE+VL ++  E+KE+ L  HSEK+A+A
Sbjct: 530 FIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKMAIA 589

Query: 577 FGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDY 635
           FG +    G  I+I+K L ICGDCH+  K  SK   R I++RD  RFH+F+DG CSC DY
Sbjct: 590 FGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSCGDY 649

Query: 636 W 636
           W
Sbjct: 650 W 650



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 6/196 (3%)

Query: 36  SLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLH 95
           S++ +  +   L  +HA  +   L +   + + LI +      +D    +FD    ++L 
Sbjct: 187 SVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFDEMVTRDLV 246

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N +I G A++      I  F+ M       N+ T   V ++   + +L  GR +H  +
Sbjct: 247 VWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGRQVHAHV 306

Query: 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215
           +K   E D  +   L DMY + G    A  +F   P+++    V+ W+ +I+G ++ G  
Sbjct: 307 LK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRD----VISWSTMISGLAQNGKS 360

Query: 216 RKAVELFGMMPKKNVA 231
            +A+ +F +M  + VA
Sbjct: 361 AEALRVFDLMKSEGVA 376



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 9/128 (7%)

Query: 293 RANDFTVVSALSACAKVGALEAG------VRVHNYISCNDFGLKGAI--GTALVDMYAKC 344
           RA+  ++   +  C + G    G      V  H  +S    G  G I    +LV MYAK 
Sbjct: 69  RADPVSLTRLVKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKF 128

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403
           G ++ A  +F    E++++TWT ++  LA   GR E+A+++   M   G  P+   F ++
Sbjct: 129 GLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSV 188

Query: 404 LTACWYSG 411
           L AC   G
Sbjct: 189 LGACGTPG 196


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 200/668 (29%), Positives = 336/668 (50%), Gaps = 87/668 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH  I+++ L +   +T  LI   S    +DYA  +FDH    +   +N LI G  +N
Sbjct: 180 KMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQN 239

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL--SLLSLGRGLHCLIVKSGVEYDAF 165
             ++  ++    M +  +  N  T     K+ +S        G  LH   +K G+  D  
Sbjct: 240 GKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVV 299

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC-------SKIGYLRKA 218
           V   L DMY + G    A ++FD+  +KN    V+++N ++ G         K  Y  KA
Sbjct: 300 VGTALLDMYAKTGSLDDAIQIFDQMVDKN----VVMYNAMMAGLLQQETIEDKCAY--KA 353

Query: 219 VELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-------------- 260
           + LF  M     K ++ ++ SL+   +   D K A ++   M + G              
Sbjct: 354 LNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDL 413

Query: 261 ---------------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
                                +V  TAMI G+ QNGE E AL++F+++L    + ++F  
Sbjct: 414 YSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIX 473

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            + +S+CA +G L +G ++  + +            + + MYAK G++ AA+L F + + 
Sbjct: 474 STIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMEN 533

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
            D+++W+ MI   A HG   +A+++F+ M   G EP+   FL +L AC + G V+  L +
Sbjct: 534 PDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRY 593

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQ------GYQN---------------- 455
           FD+M  DY ++  VKH   VV+LL R G+  D++      G+++                
Sbjct: 594 FDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHK 653

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               +Q    K+++L+P   +SYVLL NIY   G     ++VRTLM+ R IKK+PG S+I
Sbjct: 654 DTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWI 713

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCH 569
           ++   V+ F +G   HK + +I++KL++++A  +        + + + I+ E    +  H
Sbjct: 714 QIGDKVYSFVSGDRSHKNSGQIYAKLDEMLATTKRLD--SAKDILGYKIEHEHLTNVNYH 771

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEKLA+AFG++  +    ++++K L IC DCH  MK  S + +RE+++RD+ RFH+FKDG
Sbjct: 772 SEKLAVAFGVLYLSESAPVRVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHHFKDG 831

Query: 629 TCSCRDYW 636
           +CSC DYW
Sbjct: 832 SCSCGDYW 839



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 183/429 (42%), Gaps = 53/429 (12%)

Query: 35  ISLIHSSNSTKQL---RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           + L+ S+  T +L   + +H+ +I  +      +   L++          A  +FD  + 
Sbjct: 63  VKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSK 122

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGL 151
            N+  +N LI G  + S+    +  F    RL ++ ++ T      + +    LS G+ +
Sbjct: 123 SNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKMI 182

Query: 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
           H LI+  G+     +   L DMY + G+   A  +FD + + +       WN LI G  +
Sbjct: 183 HGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVS----WNSLIAGYVQ 238

Query: 212 IG-------YLRK-------------------------AVELFGMMPKK---------NV 230
            G        L+K                           ++FG M            +V
Sbjct: 239 NGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDV 298

Query: 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE-----KALAMFF 285
               +L+D + + G L  A ++F+QM +K VV + AM+ G  Q    E     KAL +FF
Sbjct: 299 VVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFF 358

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M   G++ + FT  S L AC  V   +   +VH  +  N       IG+ L+D+Y+  G
Sbjct: 359 EMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLG 418

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           ++  A L F       ++  TAMI G   +G +E A+  F +++    +PD  +   I++
Sbjct: 419 SMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTIMS 478

Query: 406 ACWYSGQVK 414
           +C   G ++
Sbjct: 479 SCANMGMLR 487



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 148/318 (46%), Gaps = 50/318 (15%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L+ G+ +H  ++K+      F++ +L +MY + G TR A K+FD+  + N    ++ +N 
Sbjct: 75  LNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSN----IVTYNS 130

Query: 205 LING-----------------------------------CSKIGYLRKAVELFGMMPKKN 229
           LI+G                                   CS+ G L     + G++    
Sbjct: 131 LISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYG 190

Query: 230 VASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
           + S V    SLID + + G +  A  LF+   +   VSW ++I G+ QNG+ E+ L +  
Sbjct: 191 LGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQ 250

Query: 286 QMLDAGVRANDFTVVSALSACAK--VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           +M   G+  N +T+ SAL AC+    G    G  +H++       L   +GTAL+DMYAK
Sbjct: 251 KMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAK 310

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE-----QAIQYFKKMMYSGTEPDGT 398
            G+++ A  +F +  +K+++ + AM+ GL      E     +A+  F +M   G +P   
Sbjct: 311 TGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMF 370

Query: 399 VFLAILTACWYSGQVKLA 416
            + ++L AC      K A
Sbjct: 371 TYSSLLKACIIVEDFKFA 388



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 74/181 (40%), Gaps = 1/181 (0%)

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I  F+  G    + +  F    +         V  + +  K G L  G  VH+++    F
Sbjct: 31  IESFATLGSVSLSSSQVFPAYSSTFLLESVDYVKLVQSATKTGKLNHGKLVHSHMIKTSF 90

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                +   L++MY KCG+  +A  +F +  + +++T+ ++I G       ++ +  F K
Sbjct: 91  RPCLFLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDK 150

Query: 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
               G + D       LTAC  SG +  A      +   Y +   V     ++++ S+ G
Sbjct: 151 ARRLGLKLDKYTCAGALTACSQSGNLS-AGKMIHGLILVYGLGSQVVLTNSLIDMYSKCG 209

Query: 448 Q 448
           Q
Sbjct: 210 Q 210


>gi|115458888|ref|NP_001053044.1| Os04g0469400 [Oryza sativa Japonica Group]
 gi|113564615|dbj|BAF14958.1| Os04g0469400, partial [Oryza sativa Japonica Group]
          Length = 401

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 157/401 (39%), Positives = 238/401 (59%), Gaps = 33/401 (8%)

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           N F++NG   +A+A+F +ML+AG++ +   +V  L A A + +L  G  +H ++    F 
Sbjct: 1   NCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFP 60

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
           ++GA+ ++LVDMY+ CG++  A  VF E K KD++ WTAMI    +HG  +QAI  FK+M
Sbjct: 61  VEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRM 120

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
           + +G  PD   FLA+L AC +S  V     + D M   Y ++P  +H+  VV+LL R GQ
Sbjct: 121 LETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQ 180

Query: 449 DSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNI 480
             + Y+  ++                            +  KLL+L+P +P +YVL+SN+
Sbjct: 181 TEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNV 240

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           +A  G+W +V  +RT M  + ++KDP  S+IE+   VH F A    H+ ++ IH KL +I
Sbjct: 241 FAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEI 300

Query: 539 MAGAREQG-YMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTI 596
               R +G Y+  T +VLH++ +EEK + L  HSE+LA++FGLI T  GT ++I K L +
Sbjct: 301 TEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRV 360

Query: 597 CGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CGDCH   K  SK+ +REIV+RD  RFH+F  GTCSC D+W
Sbjct: 361 CGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 401



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 4/128 (3%)

Query: 104 LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
            AEN      ++ F  ML   ++P+ +    +  ++A LS L+ G+ +H  +++     +
Sbjct: 3   FAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVE 62

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
             V   L DMY   G    A KVFDE     K + V+LW  +IN     G+ ++A+ +F 
Sbjct: 63  GAVVSSLVDMYSGCGSMNYALKVFDEA----KCKDVVLWTAMINATGMHGHGKQAIYIFK 118

Query: 224 MMPKKNVA 231
            M +  V+
Sbjct: 119 RMLETGVS 126



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 20/249 (8%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I+  I   +S  + ++IH  +I         + + L+   S   S++YAL +FD    K+
Sbjct: 34  ILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKD 93

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR-GLH 152
           + ++  +I     + H +  I  F  ML   V P+ +++  +  + +   L+  G+  L 
Sbjct: 94  VVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLD 153

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
            ++ K  ++        + D+  + G+T  A+K     P + KS   ++W  L+  C   
Sbjct: 154 MMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKS---VVWCALLGACR-- 208

Query: 213 GYLRKAVELFGMMPKK-------NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV---- 261
             + K  EL  +   K       N  ++V + + F   G      E+  +M E+G+    
Sbjct: 209 --IHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDP 266

Query: 262 -VSWTAMIN 269
             SW  + N
Sbjct: 267 ACSWIEIGN 275


>gi|357496515|ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 637

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 174/479 (36%), Positives = 265/479 (55%), Gaps = 48/479 (10%)

Query: 203 NVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV 262
           N L+N   K G + +A ++F  +  ++V SW   ++G ++   ++    LF++MPE+  V
Sbjct: 162 NALMNVYVKFGLVGEARKMFEGIEVRSVVSWSCFLEGLVKWESVESGRVLFDEMPERNEV 221

Query: 263 SWTAMINGFSQNGEAEKALAMFFQML-DAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           +WT MI G+  NG  ++A  +  +M+   G R +  T+ S LSAC++ G +  G  VH Y
Sbjct: 222 AWTVMIVGYVGNGFTKEAFLLLKEMVFGCGFRLSFVTLCSVLSACSQSGDVCVGRWVHCY 281

Query: 322 ISCN---DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
                  DFG+   +GT+LVDMYAKCG I AA  VF    +++++ W AM+ GLA+HG  
Sbjct: 282 AVKEMGLDFGV--MVGTSLVDMYAKCGRINAALSVFRSMLKRNVVAWNAMLGGLAMHGMG 339

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
           + A+  F  M+    +PDG  F+A+L+AC +SG V+   ++F  +   Y I+P ++H+  
Sbjct: 340 KIAVDMFPSMVEE-VKPDGVTFMALLSACSHSGLVEKGWDYFHDLEPVYRIKPEIEHYAC 398

Query: 439 VVNLLSRVGQDSQG----------------------------YQNSQNSFTKLLQLKPKH 470
           +V LL R G+  +                              Q  +     LL++ P +
Sbjct: 399 MVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLIGSCYAHGRLQLGEKIMRDLLEMDPLN 458

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLA 528
              +++LSN+YA  G+ +    +R ++++R IKK PG S I V+G +H+F AG   H   
Sbjct: 459 TEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKKVPGMSSIYVDGKLHQFIAGDKSHTRT 518

Query: 529 KEIHSKLEDIMAGAREQGYMPGTEW-VLHNIK---------EEKEEALGCHSEKLALAFG 578
            EI+ KL++++   R  GY+P T   VL             EE E+ L  HSEKLAL FG
Sbjct: 519 SEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNRDDCSESLEEVEQVLFTHSEKLALCFG 578

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           L+ T  G+ + I K L IC DCHS +K ASK+ +REIV+RD  RFH FK G+CSC DYW
Sbjct: 579 LMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYKREIVVRDRYRFHSFKHGSCSCSDYW 637


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 192/657 (29%), Positives = 317/657 (48%), Gaps = 75/657 (11%)

Query: 51  HAQIILHNLFASSR--ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108
           H +II  NL       +   L+ +    KSID A++ F     KN + + +++    EN 
Sbjct: 3   HERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNEYSYAIMMGAYQEND 62

Query: 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL--SLLSLGRGLHCLIVKSGVEYDAFV 166
             +  +  F   +   ++ N+ TY  V KS A L    L  G+ +H   +  G   D  V
Sbjct: 63  LHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLVV 122

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF---- 222
           +  L  MY + G  + A  VF++   KN    ++ +  +I   +      +A EL+    
Sbjct: 123 QNSLIHMYAKCGSFKFAAGVFEKMEPKN----LISYTSMIQAYTHTAKHVEAYELYKKML 178

Query: 223 --GMMP-----------------------------KKNVASWVSLIDGFMRKGDLKKAGE 251
             G+MP                             ++      +L+  + R G +  A  
Sbjct: 179 SEGIMPDIYAYAAALAVCPTIREGEAIHVKLGNHERRTPVCSNALVGMYGRFGRIASAKW 238

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F+ +  K + S+  MI  F++  +  KA++++ +M    +  N +T  S L AC+K+GA
Sbjct: 239 VFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGA 298

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           L  G  +H  +   D     A  TALV+MYAKCG+   A  VF +   K++ TWT+++  
Sbjct: 299 LTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSA 358

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
            +  G+ +  ++ +++M   G  PD   F AI  AC +SG     L +F +MR D++I P
Sbjct: 359 YSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVP 418

Query: 432 SVKHHTVVVNLLSRVGQDSQGYQNSQN----------------------------SFTKL 463
              H+T +++LL RVG+  +  +  +                             ++ ++
Sbjct: 419 LQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRI 478

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
            +L P     Y+L+ N+YA  G+W DVA V+ ++++R + K PG S IE    +H F  G
Sbjct: 479 TELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCG 538

Query: 524 --GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLI 580
              H L +EI ++L+++       GY P T+ VL ++ EE K E L  HSE++AL  GL+
Sbjct: 539 DTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLL 598

Query: 581 QTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            +  G T+ IVK L IC DCHS  K  SK+  R++++RD+ RFH F+ G+CSC DYW
Sbjct: 599 TSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  295 bits (755), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 184/602 (30%), Positives = 302/602 (50%), Gaps = 106/602 (17%)

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---------------------- 174
           +S   L  L  G+ +H LI+ SG   D F+  HL + Y                      
Sbjct: 70  QSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVM 129

Query: 175 ---------VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF--- 222
                    +QLG    A K+FDE  E+N    +  WN +I G ++  + ++A+ LF   
Sbjct: 130 SFNILINGYLQLGDLESAQKLFDEMSERN----IATWNAMIAGLTQFEFNKQALSLFKEM 185

Query: 223 ---GMMPK--------KNVASWVSLIDG-------------------------FMRKGDL 246
              G +P         +  A   SL+ G                         +++ G L
Sbjct: 186 YGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSL 245

Query: 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
               +L + MP + VV+W  +I G +QNG  E+ L  +  M  AG R +  T VS LSAC
Sbjct: 246 SDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSAC 305

Query: 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
           +++  L  G ++H  +         A+ ++L+ MY++ G +E +   F + +  D++ W+
Sbjct: 306 SELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWS 365

Query: 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           +MI     HGR E+A++ F +M     E +   FL++L AC +SG  +    +FD M   
Sbjct: 366 SMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKK 425

Query: 427 YFIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNSQN 458
           Y ++P ++H+T VV+LL R G  ++++G                           + ++ 
Sbjct: 426 YKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAER 485

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
              ++++L P   +SYVLLSNI+A+   W +V+++R  M+ RS++K+PG S++E+   VH
Sbjct: 486 ISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVH 545

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLAL 575
           +F  G   H    EI   L+++M+  ++ GY+P    VLH++  EEKE  L  HSEK A+
Sbjct: 546 QFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNLAHHSEKFAI 605

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634
           AF L+ T+    I+++K L +C DCH+ +K  S+I  REI++RD +RFH+FKDG CSC +
Sbjct: 606 AFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHFKDGECSCGN 665

Query: 635 YW 636
           YW
Sbjct: 666 YW 667



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/239 (31%), Positives = 130/239 (54%)

Query: 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK 228
           HL    ++LG   G  +V         S+   + N L+N  SK+G  + ++ LF  MP++
Sbjct: 67  HLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRR 126

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           NV S+  LI+G+++ GDL+ A +LF++M E+ + +W AMI G +Q    ++AL++F +M 
Sbjct: 127 NVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMY 186

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G   ++FT+ S L  CA + +L AG  VH  +    F L   +G++L  MY K G++ 
Sbjct: 187 GLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLS 246

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
               +      + ++ W  +I G A +G  E+ +  +  M  +G  PD   F+++L+AC
Sbjct: 247 DGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSAC 305



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/314 (22%), Positives = 131/314 (41%), Gaps = 29/314 (9%)

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N LI G A+N   +  ++ +  M     RP+++T+  V  + + L+ L  G+ +H  ++
Sbjct: 263 WNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLGQGQQIHAEVI 322

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K+G      V   L  MY + G    + K F +     ++  V+LW+ +I      G   
Sbjct: 323 KAGASSVLAVVSSLISMYSRSGCLEDSIKAFVD----RENFDVVLWSSMIAAYGFHGRGE 378

Query: 217 KAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAM 267
           +A+ELF  M     + N  +++SL+      G  +K  E F+ M +K      +  +T +
Sbjct: 379 EALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCV 438

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           ++   + G  E+A  M   M    V+ +     + L+AC      E   R+   I   D 
Sbjct: 439 VDLLGRAGRLEEAEGMIRSM---PVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLD- 494

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW------------GLAIH 375
            L  A    L +++A   N    S +    +++ +     + W            G   H
Sbjct: 495 PLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSH 554

Query: 376 GRYEQAIQYFKKMM 389
            +Y +   Y K++M
Sbjct: 555 PQYFEIDLYLKELM 568


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 171/493 (34%), Positives = 262/493 (53%), Gaps = 43/493 (8%)

Query: 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM-----PK 227
           MY + G+   A+++F+E   ++    V+ WN +I+G +  G   +A+++F  +     PK
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRD----VVSWNAMISGFAHAGLFGRAMDVFRELVALQCPK 56

Query: 228 KNVASWVSLID--GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
            +  +  S++   G  R  D+     +F++M   G++SW AM+  ++ N    +A+ +F 
Sbjct: 57  PDAGTMASILPSMGKARVEDIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFM 116

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +M   G+  +  T+ + L +C +V AL  G R+H  I          +  AL+DMYA CG
Sbjct: 117 RMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCG 176

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            ++ A  VF     +D+++WT++I     HG   +AI  F+KM   G EPD   F+AIL 
Sbjct: 177 CLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILA 236

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NS 456
           AC ++G + +  ++F SM  ++ I P ++H+  +V+LL R G   + Y          N 
Sbjct: 237 ACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNE 296

Query: 457 QN-------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
           +                    +   LL+L PK    YVLLSNIYA  GRW DV+ VR++M
Sbjct: 297 RVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVM 356

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           + + IKK PG S  E+   VH F  G   H  +K I+ KL +++   RE GY P  E  L
Sbjct: 357 ESKGIKKLPGVSNAELGDSVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATL 416

Query: 556 HNIKEEKEEA-LGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
           H+++EE +E  L  HSEKLA+AF LI T PGT I+I   L  C DCH   K  S I+ RE
Sbjct: 417 HDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGRE 476

Query: 615 IVLRD-TRFHYFK 626
           I+L+D  R HY K
Sbjct: 477 IILKDVNRIHYMK 489



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 108/262 (41%), Gaps = 27/262 (10%)

Query: 80  DYAL--SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137
           D AL   +FD      L  +N ++     N      +  F+ M +  + P+ +T   V  
Sbjct: 76  DIALLKGVFDEMRFTGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLP 135

Query: 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197
           S   +S LSLG+ +H +I +  +     +   L DMY   G  + A  VFD    ++   
Sbjct: 136 SCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRD--- 192

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELF 253
            V+ W  +I+   + G+ R+A++LF  M  + +     ++V+++      G L      F
Sbjct: 193 -VVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYF 251

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKV-G 310
                       +M + F    + E    M   +  AG    A DF +V  +    +V G
Sbjct: 252 -----------YSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWG 300

Query: 311 ALEAGVRVHNYISCNDFGLKGA 332
           AL    R+H+ +   D GL  A
Sbjct: 301 ALLGACRIHSNM---DIGLLAA 319


>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
 gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
 gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
 gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
          Length = 534

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 167/523 (31%), Positives = 276/523 (52%), Gaps = 64/523 (12%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
            E + I  +    S  + ++I+A II+H L  SS + T+++      + +DYA  +F+  
Sbjct: 9   VENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLFNQV 68

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
           +  N+ ++N +IR    NS +   I  +  +LR S   P+R T+PF+ KS ASL    LG
Sbjct: 69  SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLG 128

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + +H  + K G  +       L DMY++      A KVFDE                   
Sbjct: 129 KQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDE------------------- 169

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                           M +++V SW SL+ G+ R G +KKA  LF  M +K +VSWTAMI
Sbjct: 170 ----------------MYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIVSWTAMI 213

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           +G++  G   +A+  F +M  AG+  ++ +++S L +CA++G+LE G  +H Y     F 
Sbjct: 214 SGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIHLYAERRGFL 273

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
            +  +  AL++MY+KCG I  A  +FG+ + KD+++W+ MI G A HG    AI+ F +M
Sbjct: 274 KQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAHGAIETFNEM 333

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
             +  +P+G  FL +L+AC + G  +  L +FD MR DY IEP ++H+  ++++L+R G+
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCLIDVLARAGK 393

Query: 449 DSQGYQNSQN----------------------------SFTKLLQLKPKHPSSYVLLSNI 480
             +  + ++                             +   L++L+P+   +YVLL+NI
Sbjct: 394 LERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDMGNYVLLANI 453

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           YA  G+W+DV+R+R +++  ++KK PG S IEVN  V  F +G
Sbjct: 454 YADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSG 496


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 183/566 (32%), Positives = 300/566 (53%), Gaps = 75/566 (13%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHF 89
           ++SL+  S ++ Q+ QIHAQ+I  NL    FA+SR+   ++S      +++YA  +F   
Sbjct: 14  LLSLLQKSKTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTL---NVNYAELVFAQI 70

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149
              N  I N +++   E+S  +  +  +  M R  +  +  TYPFV K+  ++  L  G 
Sbjct: 71  HQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGG 130

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKT---RGAF---------------------- 184
            +    VK G   D FV   L  MY + G+T   R  F                      
Sbjct: 131 LVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCG 190

Query: 185 ------KVFDETPEKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLI 237
                  +FDE PE++    V+ W+++I+G  K +G + +A   F  MP +++ SW S+I
Sbjct: 191 EMENAQNMFDEMPERD----VVSWSIMIDGYGKKMGEVNRARVFFDSMPTRDLVSWNSMI 246

Query: 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297
           DG+ + G+++ A E+F++M +K V+SW+ MI+G++Q+ ++++AL +F QML  G++ +  
Sbjct: 247 DGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRV 306

Query: 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET 357
           +VV A+SAC+++GAL+ G  +H Y+  N   L   + TALVDMY KCG+ + A  +F   
Sbjct: 307 SVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSM 366

Query: 358 KEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLAL 417
            E+++++W  MI GL ++G  ++A++ F +M       D  +FL +L AC ++  V   L
Sbjct: 367 PERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGL 426

Query: 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT---------------- 461
           + F+ M+  Y +EP ++H+  +V+LL R GQ  Q  QN   S                  
Sbjct: 427 HIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQ-IQNIIQSMPMKPNAALWGSLLLACR 485

Query: 462 -------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGW 508
                        +L +LK      YVL+SNIYA  G W+ + R+R LM+ R +KKD G 
Sbjct: 486 IHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGR 545

Query: 509 SYIEVNGHVHRFEAG--GHKLAKEIH 532
           S IEV+G+V  F +G   H L +EI 
Sbjct: 546 SVIEVDGNVEEFVSGEKSHILREEIE 571


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 196/686 (28%), Positives = 336/686 (48%), Gaps = 76/686 (11%)

Query: 23   HKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYA 82
            H  +N+ T + ++S+  S ++ K  R IH  ++   L ++  I   L++  S     + A
Sbjct: 1043 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 1102

Query: 83   LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL 142
              +F   T ++L  +N ++    ++      +     +L++    N +T+     + ++ 
Sbjct: 1103 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 1162

Query: 143  SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLW 202
              L   + +H LI+ +G      V   L  MY +LG    A KV    P+ ++    + W
Sbjct: 1163 ECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDR----VTW 1218

Query: 203  NVLINGCSKIGYLRKAVELFGMMPKKNV-ASWV--------------------------- 234
            N LI G ++     +AV+ + ++ +K + A+++                           
Sbjct: 1219 NALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIV 1278

Query: 235  ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                        SLI  + + GDL  +  +F+ +  K  ++W AM+   + +G  E+AL 
Sbjct: 1279 LTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALK 1338

Query: 283  MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342
            +F +M + GV  + F+    L+A A +  LE G ++H  +    F     +  A +DMY 
Sbjct: 1339 IFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYG 1398

Query: 343  KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402
            KCG +     +  +   +  L+W  +I   A HG +++A + F +M+  G +PD   F++
Sbjct: 1399 KCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVS 1458

Query: 403  ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS--QGY------- 453
            +L+AC + G V   L ++DSM  ++ + P ++H   +++LL R G+ S  +G+       
Sbjct: 1459 LLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVP 1518

Query: 454  -------------------QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494
                               + ++ +   LL+L P   S+YVL SN+ A  G+W+DV  +R
Sbjct: 1519 PNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLR 1578

Query: 495  TLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE 552
              M   +IKK P  S++++   VH F  G   H  A  I +KL ++M   +E GY+P T 
Sbjct: 1579 KEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTS 1638

Query: 553  WVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKIS 611
            + LH++ EE KE  L  HSE+LALAFGLI T   +T++I K L +CGDCHS+ K+ S I 
Sbjct: 1639 FALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIV 1698

Query: 612  QREIVLRDT-RFHYFKDGTCSCRDYW 636
             R+IVLRD  RFH+F  G CSC DYW
Sbjct: 1699 GRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 140/547 (25%), Positives = 250/547 (45%), Gaps = 72/547 (13%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN 93
           I+ L     + KQ   IH  +I +   +   + T+LI        +  A ++FD    ++
Sbjct: 36  ILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERS 95

Query: 94  LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153
           +  +  ++ G ++N  F+     F  M    V+ N+ TY    ++  SL  L +G  +  
Sbjct: 96  VVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQG 155

Query: 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING----- 208
            I K     + FV+  L D + + GK   A  +F    E++    V+ WN +I G     
Sbjct: 156 CIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERD----VVSWNAMIGGYAVQG 211

Query: 209 --------------------CSKIG-YLRKAVELFGMMPKKNVASWVS------------ 235
                               C  +G  LR + E  G++    +   ++            
Sbjct: 212 FADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTG 271

Query: 236 -LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVR 293
            LI+ + + G L+ A +L + M +K + S TA+I G++  G  +  AL +F +M    + 
Sbjct: 272 LLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIG 331

Query: 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353
            +D  + S L+ CA + +   G ++H +          A+G AL+DMYAK G IE A   
Sbjct: 332 MDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRA 391

Query: 354 FGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
           F E +EK++++WT++I G A HG    A+  +KKM   G +P+   FL++L AC ++G  
Sbjct: 392 FDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLT 451

Query: 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------------ 455
                 F++M   Y I+P  +H++ +V+L +R G   + Y                    
Sbjct: 452 AEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILG 511

Query: 456 ----------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505
                      + + + L  ++P++  +YV+L++IY+A G W D  ++R LM+ RS KK+
Sbjct: 512 ASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKN 571

Query: 506 PGWSYIE 512
            G+S+ +
Sbjct: 572 AGYSFFQ 578



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 136/311 (43%), Gaps = 46/311 (14%)

Query: 128  NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVF 187
            N + +P   K  + ++    G+ LH   +   V    F    L +MY + G    A  VF
Sbjct: 745  NAVNFPL--KGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVF 802

Query: 188  DETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----GMMPKKNVASWVSLI------ 237
            DE   +N++     W+ +++G  ++G   +AV LF    G+  + N     SLI      
Sbjct: 803  DEMRHRNEAS----WSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRS 858

Query: 238  -----DGFMRKGDLKKAG-------------------------ELFEQMPEKGVVSWTAM 267
                 +GF   G + K G                         +LFE+MP+  VVSWT++
Sbjct: 859  GYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSL 918

Query: 268  INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
            + G+S +G   + L ++ +M   GV  N  T  +  S+C  +     G +V  +I    F
Sbjct: 919  MVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGF 978

Query: 328  GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                ++  +L+ M++   ++E A  VF    E D+++W AMI   A HG   ++++ F  
Sbjct: 979  EDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW 1038

Query: 388  MMYSGTEPDGT 398
            M +   E + T
Sbjct: 1039 MRHLHNETNST 1049



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 170/409 (41%), Gaps = 46/409 (11%)

Query: 41   SNSTKQL--RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN 98
            S  T Q+  + +HA  I+ ++      T  LI+  S   +I++A  +FD    +N   ++
Sbjct: 755  SEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWS 814

Query: 99   VLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVK 157
             ++ G      ++  +  F  M  L V PN  +    ++    S  +   G  +H  +VK
Sbjct: 815  TMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVK 874

Query: 158  SGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217
            +G+  D +V   L   Y  +G    A K+F+E P+ N    V+ W  L+ G S  G   +
Sbjct: 875  TGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHN----VVSWTSLMVGYSDSGNPGE 930

Query: 218  AVELFGMMPKKNVAS---------------------------------------WVSLID 238
             + ++  M ++ V+                                          SLI 
Sbjct: 931  VLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLIS 990

Query: 239  GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
             F     +++A  +F+ M E  ++SW AMI+ ++ +G   ++L  F  M       N  T
Sbjct: 991  MFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTT 1050

Query: 299  VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358
            + S LS C+ V  L+ G  +H  +          I   L+ +Y++ G  E A LVF    
Sbjct: 1051 LSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMT 1110

Query: 359  EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            E+DL++W +M+      G+    ++   +++  G   +   F + L AC
Sbjct: 1111 ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAAC 1159



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 169/423 (39%), Gaps = 43/423 (10%)

Query: 24   KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83
            +P+  +  + I +   S     +  Q+H  ++   +     + T L+        +  A 
Sbjct: 842  EPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQ 901

Query: 84   SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLS 143
             +F+     N+  +  L+ G +++ +    ++ +  M +  V  N+ T+  V+ S   L 
Sbjct: 902  KLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLE 961

Query: 144  LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN 203
               LG  +   I++ G E    V   L  M+        A  VFD   E +    ++ WN
Sbjct: 962  DQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECD----IISWN 1017

Query: 204  VLINGCSKIGYLRKAVELF-----------------------------------GMMPK- 227
             +I+  +  G  R+++  F                                   G++ K 
Sbjct: 1018 AMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKL 1077

Query: 228  ---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                NV    +L+  +   G  + A  +F+ M E+ ++SW +M+  + Q+G+    L + 
Sbjct: 1078 GLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKIL 1137

Query: 285  FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
             ++L  G   N  T  SAL+AC+    L     VH  I    F     +G ALV MY K 
Sbjct: 1138 AELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKL 1197

Query: 345  GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
            G +  A  V     + D +TW A+I G A +    +A++ +K +   G   +    +++L
Sbjct: 1198 GMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVL 1257

Query: 405  TAC 407
             AC
Sbjct: 1258 GAC 1260



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/322 (23%), Positives = 138/322 (42%), Gaps = 18/322 (5%)

Query: 3    GHVFNR-LTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNST-KQLRQIHAQIILHNLF 60
            GH  N     A+     I+    P+N IT   ++    + +   K    IHA I+L    
Sbjct: 1224 GHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFE 1283

Query: 61   ASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFM 120
            +   +   LI+  +    ++ +  IFD    K+   +N ++   A +   +  +  F  M
Sbjct: 1284 SDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEM 1343

Query: 121  LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180
              + V  ++ ++     + A+L++L  G+ LH L++K G E D  V     DMY + G+ 
Sbjct: 1344 RNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEM 1403

Query: 181  RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM----PKKNVASWVSL 236
                K+  +   +++    L WN+LI+  ++ G  +KA E F  M    PK +  ++VSL
Sbjct: 1404 HDVLKMLPQPINRSR----LSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSL 1459

Query: 237  IDGFMRKGDLKKAGELFEQMPEK-----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
            +      G + +    ++ M  +     G+     +I+   ++G    A     +M    
Sbjct: 1460 LSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEM---P 1516

Query: 292  VRANDFTVVSALSACAKVGALE 313
            V  ND    S L+AC   G LE
Sbjct: 1517 VPPNDLAWRSLLAACRIHGNLE 1538



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           Q  D G+R  +  V   L   +++ +  AG  +H +       L       L++MY+K G
Sbjct: 735 QHTDYGIRCLN-AVNFPLKGFSEITSQMAGKALHAFCIVGSVNLGIFQTNTLINMYSKFG 793

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
           NIE A  VF E + ++  +W+ M+ G    G YE+A+  F +M   G EP+G +  +++T
Sbjct: 794 NIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLIT 853

Query: 406 ACWYSG 411
           AC  SG
Sbjct: 854 ACSRSG 859


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 169/468 (36%), Positives = 263/468 (56%), Gaps = 37/468 (7%)

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMPEKG 260
           ++  CS +  L +  ++   + K    S      +L++ + +  D+  A ++F+++ ++ 
Sbjct: 98  VLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN 157

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           +V+W+ MI+G+++ G   +AL +F  M  AGV  ++ T+VS +SACA  GAL+ G  VH 
Sbjct: 158 LVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHA 217

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI+         + TALV+MYAKCG IE A  VF     KD   W++MI GLAI+G  E 
Sbjct: 218 YINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAED 277

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A++ F +M  +  +P+   F+ +L+AC +SG V     ++ SM  ++ I PS++ +  +V
Sbjct: 278 ALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWSSM-LEFGIVPSMELYGCMV 336

Query: 441 NLLSRVG----------------------------QDSQGYQNSQNSFTKLLQLKPKHPS 472
           +LL R                              + S+    S+    +LL+L+P +  
Sbjct: 337 DLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAE 396

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKE 530
           +Y+LLSN+YA+  +W+ +++VR  M+   IK  PG S IEV+G VH F  G   H  A E
Sbjct: 397 NYILLSNLYASMSQWEKMSQVRKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAME 456

Query: 531 IHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLIQTTPGTTIK 589
           +   L DI       G+ PG   VLHN+  EEKE AL  HSE+LA+A+GL++T     I+
Sbjct: 457 VREILRDISKRVHAVGHQPGISDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIR 516

Query: 590 IVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           IVK L +CGDCH + K  S   +REI++RD  RFH F +G+CSCRD+W
Sbjct: 517 IVKNLRVCGDCHEVTKIISAEYRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 182/379 (48%), Gaps = 62/379 (16%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQL-----ISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           + LRQIHA+++ H +  SS I+  L       + S +  IDYA  +F      N+  +N 
Sbjct: 2   RVLRQIHARLLTHAMPISS-ISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNS 60

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVR-----PNRLTYPFVSKSVASLSLLSLGRGLHCL 154
           +IRG +++   Q+     V + R  VR     PN  T  FV K+ + +S L  G+ +H  
Sbjct: 61  MIRGCSQS---QTPSKEPVILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHAN 117

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           ++KSG     FV   L + Y +      A KVFDE  ++N    ++ W+ +I+G ++IG 
Sbjct: 118 VLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRN----LVAWSTMISGYARIGL 173

Query: 215 LRKAVELF------GMMPKK----------------NVASWV-----------------S 235
           + +A+ LF      G++P +                +   WV                 +
Sbjct: 174 VNEALGLFRDMQKAGVVPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTA 233

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           L++ + + G +++A E+F+ MP K   +W++MI G + NG AE AL  FF+M +A V+ N
Sbjct: 234 LVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPN 293

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT--ALVDMYAKCGNIE-AASL 352
             T +  LSACA  G +  G R   + S  +FG+  ++     +VD+  +   +E A +L
Sbjct: 294 HVTFIGVLSACAHSGLVSEGRRY--WSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTL 351

Query: 353 VFGETKEKDLLTWTAMIWG 371
           V       + + W  ++ G
Sbjct: 352 VETMPISPNPVIWRTLLVG 370



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/228 (32%), Positives = 119/228 (52%), Gaps = 6/228 (2%)

Query: 225 MPKKNVASWVSLIDGFMR---KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-A 280
           MP  +++  +  I GF      GD+  A +LF Q+    + SW +MI G SQ+    K  
Sbjct: 16  MPISSISFGLCKIIGFCALSPYGDIDYARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEP 75

Query: 281 LAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339
           + +F +M+  G    N FT+   L AC+ V ALE G +VH  +  + FG    + TALV+
Sbjct: 76  VILFRKMVRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVN 135

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
            YAKC +I  AS VF E  +++L+ W+ MI G A  G   +A+  F+ M  +G  PD   
Sbjct: 136 FYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVT 195

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
            +++++AC  SG +     +  +      IE  ++  T +VN+ ++ G
Sbjct: 196 MVSVISACAASGALDTG-KWVHAYINKQLIETDLELSTALVNMYAKCG 242



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 8/248 (3%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++  +   N  T   ++      ++ ++ +Q+HA ++     +S  + T L++  +  + 
Sbjct: 83  VRRGYPNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCED 142

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  +FD  T +NL  ++ +I G A        +  F  M +  V P+ +T   V  +
Sbjct: 143 IVLASKVFDEITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISA 202

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            A+   L  G+ +H  I K  +E D  +   L +MY + G    A +VFD  P K+    
Sbjct: 203 CAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTKA- 261

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFE 254
              W+ +I G +  G    A+E F  M     K N  +++ ++      G + +    + 
Sbjct: 262 ---WSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEGRRYWS 318

Query: 255 QMPEKGVV 262
            M E G+V
Sbjct: 319 SMLEFGIV 326



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 103/239 (43%), Gaps = 8/239 (3%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           + +T   +IS   +S +    + +HA I    +     ++T L++  +    I+ A  +F
Sbjct: 192 DEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVF 251

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
           D    K+   ++ +I GLA N   +  +  F  M    V+PN +T+  V  + A   L+S
Sbjct: 252 DAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVS 311

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
            GR     +++ G+     +   + D+  +      A  + +  P    S + ++W  L+
Sbjct: 312 EGRRYWSSMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMP---ISPNPVIWRTLL 368

Query: 207 NGCSKIGYLRK----AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
            GC K   L K    A  L  + P  N  +++ L + +      +K  ++ ++M   G+
Sbjct: 369 VGCKKSKNLDKSEVVAQRLLELEP-HNAENYILLSNLYASMSQWEKMSQVRKKMKGMGI 426


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 189/664 (28%), Positives = 331/664 (49%), Gaps = 76/664 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLH---KSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           + +HAQ ++ N  ++    + L S   L+     +  A ++FD    +N+  +NVL+ G 
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 105 AENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163
               +    +  F  M+ L +  PN   +     + +    +  G   H L+ K G+   
Sbjct: 92  LHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH 151

Query: 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223
            +V+  L  MY +      A +V D  P ++ ++ +  +N ++N   + G   +AVE+  
Sbjct: 152 QYVKSALVHMYSRCSHVELALQVLDTVPGEHVND-IFSYNSVLNALVESGRGEEAVEVLR 210

Query: 224 MMPKKNVA----SWVS-----------------------------------LIDGFMRKG 244
            M  + VA    ++V                                    LID + + G
Sbjct: 211 RMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCG 270

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304
           ++  A  +F+ +  + VV WTA++  + QNG  E++L +F  M   G   N++T    L+
Sbjct: 271 EVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLN 330

Query: 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364
           ACA + AL  G  +H  +    F     +  AL++MY+K G+I+++  VF +   +D++T
Sbjct: 331 ACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIIT 390

Query: 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424
           W AMI G + HG  +QA+Q F+ M+ +   P+   F+ +L+A  + G VK    + + + 
Sbjct: 391 WNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLM 450

Query: 425 FDYFIEPSVKHHTVVVNLLSRVG----------------------------QDSQGYQNS 456
            ++ IEP ++H+T +V LLSR G                               + Y   
Sbjct: 451 RNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLG 510

Query: 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516
           +     +LQ+ P    +Y LLSN+YA   RW  V  +R LM+ R+IKK+PG S++++   
Sbjct: 511 RRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRND 570

Query: 517 VHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEA-LGCHSEKL 573
           +H F  E   H  + +I+ K++ ++A  +  GY+P    VLH++++E++E  L  HSEKL
Sbjct: 571 IHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKL 630

Query: 574 ALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSC 632
           ALA+GL++      I+I+K L +C DCH+ +K  SK++ R I++RD  RFH+F+DG+C+C
Sbjct: 631 ALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTC 690

Query: 633 RDYW 636
            D+W
Sbjct: 691 LDHW 694


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 178/560 (31%), Positives = 284/560 (50%), Gaps = 76/560 (13%)

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           R +H  ++KS    D F+   L   Y+ +G T  A K+FDE P K+     + WN L++G
Sbjct: 71  RVIHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDS----ISWNSLVSG 126

Query: 209 CSKIGYLRKAVELFGMMPKKNVASW----------------------------------- 233
            S+IG L   + +F  M  +    W                                   
Sbjct: 127 FSRIGDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMEL 186

Query: 234 -VSLIDGFM----RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
            V +++ F+    + G +  A +LF  +PE+ +VSW +M+  ++QNG   +A+  F  M 
Sbjct: 187 EVKVVNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMR 246

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G+  ++ T++S L AC K+        +H  I          I T L+++Y+K G + 
Sbjct: 247 VNGLFPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLN 306

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            +  VF E  + D +  TAM+ G A+HG  ++AI++FK  +  G +PD   F  +L+AC 
Sbjct: 307 VSHKVFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACS 366

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ---------NS--- 456
           +SG V     +F  M   Y ++P + H++ +V+LL R G  +  Y+         NS   
Sbjct: 367 HSGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVW 426

Query: 457 ----------------QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                           + +   L+ L P  P +Y++LSNIY+A G W D ++VR LM+ +
Sbjct: 427 GALLGACRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTK 486

Query: 501 SIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
              ++ G S+IE    +HRF  +   H  + +IH KLE+IM   +E G++  TE +LH++
Sbjct: 487 VFIRNAGCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDV 546

Query: 559 KEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            EE K + +  HSEK+ALAFGL+ +     + I+K L IC DCH+  K+ S I +R I++
Sbjct: 547 DEEVKTDMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIII 606

Query: 618 RDT-RFHYFKDGTCSCRDYW 636
           RD+ RFH+F DG CSC DYW
Sbjct: 607 RDSKRFHHFSDGLCSCADYW 626



 Score = 40.8 bits (94), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 39/206 (18%), Positives = 86/206 (41%), Gaps = 10/206 (4%)

Query: 27  NNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86
           N +T   +IS    + +  +   +H   +   +    ++    I+       +D A  +F
Sbjct: 152 NELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVNAFINMYGKFGCVDSAFKLF 211

Query: 87  DHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS 146
                +N+  +N ++    +N      +++F  M    + P+  T   + ++   L L  
Sbjct: 212 WALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFPDEATILSLLQACEKLPLGR 271

Query: 147 LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           L   +H +I   G+  +  +   L ++Y +LG+   + KVF E  + +K    +    ++
Sbjct: 272 LVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVFAEISKPDK----VALTAML 327

Query: 207 NGCSKIGYLRKAVELF------GMMP 226
            G +  G+ ++A+E F      GM P
Sbjct: 328 AGYAMHGHGKEAIEFFKWTVREGMKP 353


>gi|115465559|ref|NP_001056379.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|52353535|gb|AAU44101.1| unknown protein [Oryza sativa Japonica Group]
 gi|113579930|dbj|BAF18293.1| Os05g0572900 [Oryza sativa Japonica Group]
 gi|215737011|dbj|BAG95940.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 687

 Score =  295 bits (754), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 197/629 (31%), Positives = 305/629 (48%), Gaps = 84/629 (13%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA 140
           A  +FD    +N    N+L+ G A +   +  ++    +LR++    N         + A
Sbjct: 69  ARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALA----LLRVADFGLNEYVLSSAVAATA 124

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            +    +GR  H   +K+G+    +V   +  MY Q      A KVFD     N    V 
Sbjct: 125 HVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFN----VF 180

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASW--------------------------- 233
            +N +ING    G +  +  +   M + NV  W                           
Sbjct: 181 AFNSMINGFLDRGQMDGSTSIVRSMVR-NVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQ 239

Query: 234 -------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280
                         +L+D + +     +A  +FE +PEK +VSWTA++  ++QN   E A
Sbjct: 240 ALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDA 299

Query: 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN-YISCNDFGLKGAIGTALVD 339
           L +F  M   GVR N+FT   AL++CA +  L+ G  +    +    +GL   +  AL++
Sbjct: 300 LQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLL-PVCNALMN 358

Query: 340 MYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV 399
           MY+K G++E A  VF     +D+++W ++I G A HGR  +A++ F  M+++   P    
Sbjct: 359 MYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVT 418

Query: 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ----------- 448
           F+ +L+AC   G V     + + M  +  ++P  +H+T +V LL RVG+           
Sbjct: 419 FIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESN 478

Query: 449 --------------DSQGYQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491
                           Q Y+N         ++ QLKPK   +YVLLSN+YA   RW  V 
Sbjct: 479 CIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVV 538

Query: 492 RVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMP 549
           +VR LM+   ++K+PG S+I+V   VH F  E   H   ++I  KL++++   +  GY+P
Sbjct: 539 KVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVP 598

Query: 550 GTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYAS 608
                LH++++E KEE L  HSEKLALAFGLI+T  G  I+I+K + IC DCH  +K  S
Sbjct: 599 NIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLIS 658

Query: 609 KISQREIVLRDT-RFHYFKDGTCSCRDYW 636
             + R IV+RDT RFH  +DG CSC DYW
Sbjct: 659 LATGRRIVVRDTVRFHCIEDGVCSCDDYW 687



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 158/374 (42%), Gaps = 49/374 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ H   I   L     + + ++        +D A+ +FD+ +  N+  FN +I G  + 
Sbjct: 133 RQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDR 192

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                  S    M+R   + + ++Y  V    AS   + LG  +H   +K  +E + +V 
Sbjct: 193 GQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVG 252

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKN---------------------------KSESV- 199
             L DMY +      A +VF+  PEKN                           + E V 
Sbjct: 253 SALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVR 312

Query: 200 ---LLWNVLINGCSKIGYLRKAVEL---------FGMMPKKNVASWVSLIDGFMRKGDLK 247
                + V +N C+ +  L+    L         +G++P  N     +L++ + + G ++
Sbjct: 313 PNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCN-----ALMNMYSKSGSVE 367

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307
            A  +F  MP + VVSW ++I G++ +G A +A+  F  ML A    +  T +  LSACA
Sbjct: 368 DARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACA 427

Query: 308 KVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNI-EAASLVFGETKEKDLLT 364
           ++G ++ G    N I   + G+K      T +V +  + G + EA   +       D++ 
Sbjct: 428 QLGLVDEGFYYLN-IMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVA 486

Query: 365 WTAMIWGLAIHGRY 378
           W +++    ++  Y
Sbjct: 487 WRSLLSSCQVYRNY 500



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 41/299 (13%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           LSLG+ +H  +V++   +D     +L  +YV+ G+   A +VFD  P +N        N+
Sbjct: 32  LSLGKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSG----NL 86

Query: 205 LINGCSKIGYLRKAVEL-----FGM---------MPKKNVASW----------------- 233
           L++G +  G  R A+ L     FG+             +V S+                 
Sbjct: 87  LMSGYASSGRHRDALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAE 146

Query: 234 -----VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 +++  + +   + +A ++F+ +    V ++ +MINGF   G+ + + ++   M+
Sbjct: 147 HPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMV 206

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
               + +  + V+ L  CA    +  G +VH         L   +G+ALVDMY KC    
Sbjct: 207 RNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPH 266

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            A+ VF    EK++++WTA++     +  +E A+Q F  M   G  P+   +   L +C
Sbjct: 267 EANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSC 325



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 97/188 (51%), Gaps = 3/188 (1%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           +V  + +LI  +++ G L  A ++F+ MP +  VS   +++G++ +G    ALA+  ++ 
Sbjct: 49  DVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALAL-LRVA 107

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
           D G+  N++ + SA++A A V + + G + H Y           + +A++ MY +C +++
Sbjct: 108 DFGL--NEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMD 165

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            A  VF      ++  + +MI G    G+ + +    + M+ +  + D   ++A+L  C 
Sbjct: 166 EAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCA 225

Query: 409 YSGQVKLA 416
            + +V L 
Sbjct: 226 STKEVVLG 233


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 192/612 (31%), Positives = 307/612 (50%), Gaps = 83/612 (13%)

Query: 13  IAPTTNIKSSH---KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           I+   N++  H    P+         SL+    S KQL+QIHAQ++ +++   +    ++
Sbjct: 11  ISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKI 70

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPN 128
              A L K   YA   F +      + FNV+IRGL+   +  S    F   ++ L ++PN
Sbjct: 71  ---ADL-KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPN 126

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            LTYPF+  + ++L  +  GR  HC +++ G++ D  V   L  MY + GK   A KVFD
Sbjct: 127 NLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFD 186

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
           E  +K+    ++ WN +I+G SK+ +  +AV LF      G  P +              
Sbjct: 187 EISQKD----LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242

Query: 229 --NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
              + +WV                 +LI  + + GDL  A  +F+ M +K  V+W AMI 
Sbjct: 243 DLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMIT 302

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G++QNG +E+A+ +F  M  +    +  T++  LSACA +GAL+ G +V  Y S   F  
Sbjct: 303 GYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQD 362

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +GTALVDMYAKCG+++ A  VF    +K+ ++W AMI  LA HG+ ++A+  FK MM
Sbjct: 363 DVYVGTALVDMYAKCGSLDNAFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMM 422

Query: 390 YSG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
             G    P+   F+ +L+AC ++G V      F  M   + + P ++H++ +V+L SR G
Sbjct: 423 NEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAG 482

Query: 448 ----------------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
                                       Q  +    S+     LL+L+P +  +YV+ S 
Sbjct: 483 HLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSK 542

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLED 537
           +YA   RW D AR+R LM+++ + K PG S+I++N  +H F AG   H+   EIH  L+ 
Sbjct: 543 LYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDL 602

Query: 538 IMAGAREQGYMP 549
           ++   R +GY+P
Sbjct: 603 LIDDLRREGYIP 614


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 200/668 (29%), Positives = 336/668 (50%), Gaps = 87/668 (13%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           + IH  I+++ L +   +T  LI   S    +DYA  +FDH    +   +N LI G  +N
Sbjct: 87  KMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQN 146

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASL--SLLSLGRGLHCLIVKSGVEYDAF 165
             ++  ++    M +  +  N  T     K+ +S        G  LH   +K G+  D  
Sbjct: 147 GKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVV 206

Query: 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC-------SKIGYLRKA 218
           V   L DMY + G    A ++FD+  +KN    V+++N ++ G         K  Y  KA
Sbjct: 207 VGTALLDMYAKTGSLDDAIQIFDQMVDKN----VVMYNAMMAGLLQQETIEDKCAY--KA 260

Query: 219 VELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-------------- 260
           + LF  M     K ++ ++ SL+   +   D K A ++   M + G              
Sbjct: 261 LNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDL 320

Query: 261 ---------------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299
                                +V  TAMI G+ QNGE E AL++F+++L    + ++F  
Sbjct: 321 YSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIF 380

Query: 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359
            + +S+CA +G L +G ++  + +            + + MYAK G++ AA+L F + + 
Sbjct: 381 STIMSSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMEN 440

Query: 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419
            D+++W+ MI   A HG   +A+++F+ M   G EP+   FL +L AC + G V+  L +
Sbjct: 441 PDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRY 500

Query: 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQ--DSQ------GYQN---------------- 455
           FD+M  DY ++  VKH   VV+LL R G+  D++      G+++                
Sbjct: 501 FDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPVMWRALLSACRIHK 560

Query: 456 ----SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511
               +Q    K+++L+P   +SYVLL NIY   G     ++VRTLM+ R IKK+PG S+I
Sbjct: 561 DTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTLMEERRIKKEPGLSWI 620

Query: 512 EVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCH 569
           ++   V+ F +G   HK + +I++KL++++A  +        + + + I+ E    +  H
Sbjct: 621 QIGDKVYSFVSGDRSHKNSGQIYAKLDEMLATTKRLD--SAKDILGYKIEHEHLTNVNYH 678

Query: 570 SEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDG 628
           SEKLA+AFG++  +    ++++K L IC DCH  MK  S + +RE+++RD+ RFH+FKDG
Sbjct: 679 SEKLAVAFGVLYLSESAPVRVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHHFKDG 738

Query: 629 TCSCRDYW 636
           +CSC DYW
Sbjct: 739 SCSCGDYW 746



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 164/376 (43%), Gaps = 50/376 (13%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL 144
           +FD  +  N+  +N LI G  + S+    +  F    RL ++ ++        + +    
Sbjct: 23  LFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAGALTACSQSGN 82

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           LS G+ +H LI+  G+     +   L DMY + G+   A  +FD + + +       WN 
Sbjct: 83  LSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVS----WNS 138

Query: 205 LINGCSKIG-------YLRK-------------------------AVELFGMMPKK---- 228
           LI G  + G        L+K                           ++FG M       
Sbjct: 139 LIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIK 198

Query: 229 -----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAE----- 278
                +V    +L+D + + G L  A ++F+QM +K VV + AM+ G  Q    E     
Sbjct: 199 LGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAY 258

Query: 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338
           KAL +FF+M   G++ + FT  S L AC  V   +   +VH  +  N       IG+ L+
Sbjct: 259 KALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILI 318

Query: 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398
           D+Y+  G++  A L F       ++  TAMI+G   +G +E A+  F +++    +PD  
Sbjct: 319 DLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEF 378

Query: 399 VFLAILTACWYSGQVK 414
           +F  I+++C   G ++
Sbjct: 379 IFSTIMSSCANMGMLR 394



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 93/164 (56%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
           GD + A +LF++M +  +V++ ++I+G+ Q    +K + +F +    G++ + +    AL
Sbjct: 15  GDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAGAL 74

Query: 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363
           +AC++ G L AG  +H  I     G +  +  +L+DMY+KCG ++ A ++F  + + D +
Sbjct: 75  TACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGV 134

Query: 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +W ++I G   +G+YE+ +   +KM  +G   +     + L AC
Sbjct: 135 SWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKAC 178



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 130/287 (45%), Gaps = 50/287 (17%)

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLING--------------------------- 208
           + G TR A K+FD+  + N    ++ +N LI+G                           
Sbjct: 13  KCGDTRSADKLFDKMSKSN----IVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKY 68

Query: 209 --------CSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQM 256
                   CS+ G L     + G++    + S V    SLID + + G +  A  LF+  
Sbjct: 69  NCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHS 128

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--VGALEA 314
            +   VSW ++I G+ QNG+ E+ L +  +M   G+  N +T+ SAL AC+    G    
Sbjct: 129 DKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMF 188

Query: 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAI 374
           G  +H++       L   +GTAL+DMYAK G+++ A  +F +  +K+++ + AM+ GL  
Sbjct: 189 GTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQ 248

Query: 375 HGRYE-----QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
               E     +A+  F +M   G +P    + ++L AC      K A
Sbjct: 249 QETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFA 295


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 182/578 (31%), Positives = 300/578 (51%), Gaps = 77/578 (13%)

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
           Y  +     S   +  G+ +H  ++K+      ++R  L  +Y +      A ++FDE P
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM------P------------------- 226
           +KN    V+ W  +I+  S+ G+  +A+ LF  M      P                   
Sbjct: 153 QKN----VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFE 208

Query: 227 ----------KKNVASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272
                     K+N  S +    SL+D + + G +  A  +F  +PE+ VV+ TA+I+G++
Sbjct: 209 TGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYA 268

Query: 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332
           Q G  E+AL +F Q+   G+ +N  T  S L+A + + AL  G +VH+++  +       
Sbjct: 269 QMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVV 328

Query: 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392
           +  +L+DMY+KCGN+  A  +F    E+  ++W AM+ G + HG   + ++ FK M    
Sbjct: 329 LLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREEN 388

Query: 393 -TEPDGTVFLAILTACWYSGQVKLALN-FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450
             +PD   +LA+L+ C +     + L  F++ +     IEP + H+  VV+LL R G+  
Sbjct: 389 KVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVE 448

Query: 451 QGYQN-SQNSFT---------------------------KLLQLKPKHPSSYVLLSNIYA 482
           + +    +  F                            KLL+L+P++  +YV+LSN+YA
Sbjct: 449 EAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYA 508

Query: 483 AEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAK--EIHSKLEDIMA 540
           + G+W+D+  +R LMQ +++ K+PG S++E++  VH F A  H   +  E+  K++++  
Sbjct: 509 SAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSI 568

Query: 541 GAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGD 599
             +E GY+P    VL+++ EE KE+ L  HSEKLALAFGLI T  GTTI+++K L IC D
Sbjct: 569 KFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVD 628

Query: 600 CHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
           CHS  K+ S++  R ++LRD  RFH    G CSC DYW
Sbjct: 629 CHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 20/282 (7%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++S  +P N+ T   I++  + S   +  RQIH+  I  N  +   + + L+   +    
Sbjct: 183 LRSDTEP-NHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGR 241

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  +F     +++     +I G A+    +  +  F  +    +  N +TY  V  +
Sbjct: 242 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 301

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSE 197
           ++ L+ L+ G+ +H  +++SG +Y   V ++ L DMY + G    A ++FD  PE+    
Sbjct: 302 LSGLAALNHGKQVHSHVLRSG-QYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER---- 356

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-----SWVSLIDGFMRKGDLKKAG-E 251
           + + WN ++ G SK G  R+ +ELF +M ++N       ++++++ G    G L+  G E
Sbjct: 357 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSG-CSHGQLEDMGLE 415

Query: 252 LFEQMP------EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           +F  M       E  +  +  +++   + G  E+A     +M
Sbjct: 416 IFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKM 457


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 175/562 (31%), Positives = 287/562 (51%), Gaps = 77/562 (13%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ +H  ++K+      ++R  L   Y +      A KV DE PEKN    V+ W  +I+
Sbjct: 71  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN----VVSWTAMIS 126

Query: 208 GCSKIGYLRKAVELFGMMPKKN------------------------------VASW---- 233
             S+ G+  +A+ +F  M + +                              +  W    
Sbjct: 127 RYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDS 186

Query: 234 -----VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
                 SL+D + + G +K+A E+FE +PE+ VVS TA+I G++Q G  E+AL MF ++ 
Sbjct: 187 HIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLH 246

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G+  N  T  S L+A + +  L+ G + H ++   +      +  +L+DMY+KCGN+ 
Sbjct: 247 SEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLS 306

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTAC 407
            A  +F    E+  ++W AM+ G + HG   + ++ F+ M      +PD    LA+L+ C
Sbjct: 307 YARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGC 366

Query: 408 WYSGQVKLALNFFDSM-RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK---- 462
            +       LN FD M   +Y  +P  +H+  +V++L R G+  + ++  +   +K    
Sbjct: 367 SHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAG 426

Query: 463 ------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                                   L++++P++  +YV+LSN+YA+ GRW DV  VR +M 
Sbjct: 427 VLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMM 486

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
           ++++ K+PG S+I+    +H F A    H   +E+ +K+++I    ++ GY+P    VL+
Sbjct: 487 QKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLY 546

Query: 557 NIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           ++ EE KE+ L  HSEKLAL FGLI T  G  I++ K L IC DCH+  K  SK+ +RE+
Sbjct: 547 DVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREV 606

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
            LRD  RFH   DG CSC DYW
Sbjct: 607 SLRDKNRFHQIVDGICSCGDYW 628



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 5/207 (2%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++S  KP+     T + S I +S      +QIH  I+  N  +   + + L+   +    
Sbjct: 145 MRSDGKPNEFTFATVLTSCIRASGLGLG-KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQ 203

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  IF+    +++     +I G A+    +  +  F  +    + PN +TY  +  +
Sbjct: 204 IKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTA 263

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           ++ L+LL  G+  HC +++  + + A ++  L DMY + G    A ++FD  PE+    +
Sbjct: 264 LSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER----T 319

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM 225
            + WN ++ G SK G  R+ +ELF +M
Sbjct: 320 AISWNAMLVGYSKHGLGREVLELFRLM 346



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 71/155 (45%), Gaps = 3/155 (1%)

Query: 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312
           F   P   V+     I+    NG  ++AL    +M   G         + L+AC    AL
Sbjct: 12  FSSSPTNYVLQTILPISQLCSNGRLQEAL---LEMAMLGPEMGFHGYDALLNACLDKRAL 68

Query: 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372
             G RVH ++    +     + T L+  Y KC  +E A  V  E  EK++++WTAMI   
Sbjct: 69  RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY 128

Query: 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           +  G   +A+  F +MM S  +P+   F  +LT+C
Sbjct: 129 SQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSC 163


>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
 gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
          Length = 664

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 198/624 (31%), Positives = 294/624 (47%), Gaps = 93/624 (14%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSR------ITTQLISSASLHKSID------- 80
           + +L+  S + +Q++Q HA++ +  L AS        +  +L+     H+  D       
Sbjct: 35  LAALLPPSPTVRQVQQAHARLAVLGLAASRAMPHLLAVLPRLLPDKPRHRGDDGGGDGDH 94

Query: 81  --YALSIFDHFTPKNLHIFNVLIRGLAEN------SHFQSCISH-FVFMLRLSVRPNRLT 131
             Y L++F      +    N L+R L         S F+    H F F+L  +   N L 
Sbjct: 95  YAYPLALFRRANSTSAFASNNLLRVLPHPLPLTLFSRFRRRNPHSFTFLL--ASISNHLN 152

Query: 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191
               S S  S     LG  +H L VK+G   D FVR  L   Y   G      +VFDE P
Sbjct: 153 AAGPSASACSF----LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELP 208

Query: 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE 251
                                               ++V +W  ++ G++R G +  A E
Sbjct: 209 RV----------------------------------RDVLTWNEVLAGYVRAGMMTVARE 234

Query: 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311
           +F++MP +  +SW+ ++ G+ +  E E AL +F  M++ GVR N   VV+ALSA A++G 
Sbjct: 235 VFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVEQGVRPNQAAVVTALSAAARLGL 294

Query: 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWG 371
           LE G  VHN +  +   +   +G ALVDMYAKCG +  A  VF   + +D+  W AMI G
Sbjct: 295 LEHGKFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICG 354

Query: 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431
           LA HG    A++ F++ +  G  P    F+ +L  C  SG V     +F  +   Y IEP
Sbjct: 355 LAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEP 414

Query: 432 SVKHHTVVVNLLSRVG------QDSQGYQNSQNSF----------------------TKL 463
            ++H+  +V+LL R G      +  +G   + +                         KL
Sbjct: 415 EMEHYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKL 474

Query: 464 LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           ++L P H   YVLLS IYA   +W +V  VR LM  R   K  GWS +E +G VH+F  G
Sbjct: 475 IELDPTHSGYYVLLSGIYAKANKWDEVREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVG 534

Query: 524 G--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALGCHSEKLALAFGLI 580
              HK + +I+  L+ I     E GY+P    VLH+I +EEK  A+  HSE+LA+A+G I
Sbjct: 535 DTYHKDSVQIYDTLDMINKRLTEAGYVPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFI 594

Query: 581 QTTPGTTIKIVKKLTICGDCHSLM 604
               G+ I+IVK L +CGDCH  +
Sbjct: 595 VLEAGSPIRIVKNLRVCGDCHEFI 618


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 192/612 (31%), Positives = 306/612 (50%), Gaps = 83/612 (13%)

Query: 13  IAPTTNIKSSH---KPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQL 69
           I+   N++  H    P+         SL+    S KQL+QIHAQ++ +++   +    ++
Sbjct: 11  ISRYLNLQKPHSKPNPNRQALSDKFNSLLQQCLSIKQLKQIHAQLLTNSIHKPNSFLYKI 70

Query: 70  ISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPN 128
              A L K   YA   F +      + FNV+IRGL+   +  S    F   ++ L ++PN
Sbjct: 71  ---ADL-KDFAYASVFFSNILDPTEYSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPN 126

Query: 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188
            LTYPF+  + ++L  +  GR  HC +++ G++ D  V   L  MY + GK   A KVFD
Sbjct: 127 NLTYPFLFIACSNLLAVENGRMGHCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFD 186

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF------GMMPKK-------------- 228
           E  +K+    ++ WN +I+G SK+ +  +AV LF      G  P +              
Sbjct: 187 EISQKD----LVSWNSMISGYSKMRHAGEAVGLFREMMEAGFQPNEMSLVSVLGACGELG 242

Query: 229 --NVASWV-----------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
              + +WV                 +LI  + + GDL  A  +F+ M +K  V+W AMI 
Sbjct: 243 DLKLGTWVEEFVVENKMTLNYFMGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMIT 302

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G++QNG +E+A+ +F  M  +    +  T++  LSACA +GAL+ G +V  Y S   F  
Sbjct: 303 GYAQNGMSEEAIKLFQDMRMSSTAPDQITLIGILSACASIGALDLGKQVEIYASERGFQD 362

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
              +GTALVDMYAKCG+++ A  VF     K+ ++W AMI  LA HG+ ++A+  FK MM
Sbjct: 363 DVYVGTALVDMYAKCGSLDNAFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMM 422

Query: 390 YSG--TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447
             G    P+   F+ +L+AC ++G V      F  M   + + P ++H++ +V+L SR G
Sbjct: 423 NEGGTVSPNDITFVGVLSACVHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAG 482

Query: 448 ----------------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479
                                       Q  +    S+     LL+L+P +  +YV+ S 
Sbjct: 483 HLEEAWDFVMTMPEKPDEVILGALLGACQKRKNIDISERVMKLLLELEPSNSGNYVISSK 542

Query: 480 IYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLED 537
           +YA   RW D AR+R LM+++ + K PG S+I++N  +H F AG   H+   EIH  L+ 
Sbjct: 543 LYANLRRWDDSARMRMLMKQKGVSKTPGCSWIDINSQLHEFHAGDVLHQEWIEIHQILDL 602

Query: 538 IMAGAREQGYMP 549
           ++   R +GY+P
Sbjct: 603 LIDDLRREGYIP 614


>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
          Length = 608

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 171/513 (33%), Positives = 277/513 (53%), Gaps = 42/513 (8%)

Query: 35  ISLIHSSNSTKQLRQIHAQIILHNL----FASSRITTQLISSASLHKSIDYALSIFDHFT 90
           +SL+    S  QL+QI +Q++L  L    FASSR+      + S  + +DY  +I  +  
Sbjct: 54  LSLLEKCKSISQLKQIQSQMVLTGLIEDGFASSRLIA--FCAISEWRDLDYCTNILFNTR 111

Query: 91  PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVASLSLLSLGR 149
             N   +NV IRG  ++ + +  +  +  +L+    +P+  TYP + K+ A LSL+ +G 
Sbjct: 112 NPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGS 171

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +   ++  G + D FV   +  + V  G   GA K+FD++  ++    ++ WN +ING 
Sbjct: 172 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRD----LVSWNSMING- 226

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
              G L  A +LF  M  K + SW +++ G+ + G L  A +LF++MP+K VV W AMI 
Sbjct: 227 -YCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIG 285

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329
           G+      ++ALA+F +M    +  ++ T+VS LSAC+++GAL+ G+ +H+YI  ++  L
Sbjct: 286 GYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL 345

Query: 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
             A+GTAL+DMYAKCG I  A  VF E   ++ LTWTA+I GLA+HG    AI YF +M+
Sbjct: 346 NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMI 405

Query: 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449
            +   PD   FL +L+AC + G V+    +F  M   + + P +KH++ +V+LL R G  
Sbjct: 406 DNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLL 465

Query: 450 SQGYQ----------------------------NSQNSFTKLLQLKPKHPSSYVLLSNIY 481
            +  +                              + + +KLLQ+ P     YVLL+N+Y
Sbjct: 466 EEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMY 525

Query: 482 AAEGRWKDVARVRTLMQRRSIKKDP-GWSYIEV 513
                WK+  + R LM++R ++K P  WS + V
Sbjct: 526 GEAEMWKEAGKARKLMRQRGVEKTPDSWSLLSV 558


>gi|193806402|sp|Q56X05.2|PPR15_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06145; AltName: Full=Protein EMBRYO DEFECTIVE 1444
          Length = 577

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 284/549 (51%), Gaps = 37/549 (6%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           +I   ++ K L    A +I  +L    R+  Q I++ +  K +D A+S        N+ +
Sbjct: 34  IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFV 93

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N L +G    SH    +  +V MLR SV P+  TY  + K+ +  S    G  L   I 
Sbjct: 94  YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS--RFGESLQAHIW 151

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K G  +   ++  L D Y   G+ R A KVFDE PE++     + W  +++   ++  + 
Sbjct: 152 KFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDD----IAWTTMVSAYRRVLDMD 207

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
            A  L   M +KN A+   LI+G+M  G+L++A  LF QMP K ++SWT MI G+SQN  
Sbjct: 208 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 267

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
             +A+A+F++M++ G+  ++ T+ + +SACA +G LE G  VH Y   N F L   IG+A
Sbjct: 268 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 327

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LVDMY+KCG++E A LVF    +K+L  W ++I GLA HG  ++A++ F KM     +P+
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
              F+++ TAC ++G V      + SM  DY I  +V+H+  +V+L S+ G   +  +  
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447

Query: 457 QN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
            N                            +F KL+ L+P +   Y LL ++YA + RW+
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 507

Query: 489 DVARVRTLMQRRSIKKD-PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
           DVA +R  M+   I+K  PG S I ++   H F A    H  + E+   L++I       
Sbjct: 508 DVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLA 567

Query: 546 GYMPGTEWV 554
           GY+  TE V
Sbjct: 568 GYVQETENV 576


>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 181/625 (28%), Positives = 319/625 (51%), Gaps = 99/625 (15%)

Query: 45  KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104
           ++L+Q HA +++     S  + T+L++ +    SI Y   +F   +  +  +FN LI+  
Sbjct: 24  RRLQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKA- 82

Query: 105 AENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA 164
             +S+F   +    F  R+                           LH  IV S   + +
Sbjct: 83  --SSNFGFSLDAVFFYRRM---------------------------LHSRIVPSTYTFTS 113

Query: 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGM 224
            ++       ++LG                   +++  +V ++G +   +++ A+  F  
Sbjct: 114 VIKACADLSLLRLG-------------------TIVHSHVFVSGYASNSFVQAALVTF-- 152

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                          + +    + A ++F++MP++ +++W +MI+G+ QNG A +A+ +F
Sbjct: 153 ---------------YAKSCTPRVARKVFDEMPQRSIIAWNSMISGYEQNGLASEAVEVF 197

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            +M ++G   +  T VS LSAC+++G+L+ G  +H  I      +   + T+LV+M+++C
Sbjct: 198 NKMRESGGEPDSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRC 257

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G++  A  VF    E ++++WTAMI G  +HG   +A++ F +M   G  P+   ++A+L
Sbjct: 258 GDVGRARAVFDSMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVL 317

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-- 462
           +AC ++G +      F SM+ +Y + P V+HH  +V++  R G  ++ YQ  +   ++  
Sbjct: 318 SACAHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEEL 377

Query: 463 ---------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                                      L+  +P++P  YVLLSN+YA  GR   V  VR 
Sbjct: 378 VPAVWTAMLGACKMHKNFDLGVEVAENLISAEPENPGHYVLLSNMYALAGRMDRVESVRN 437

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
           +M +R +KK  G+S I+V    + F  G   H    EI+  L+++M   ++ GY P  E 
Sbjct: 438 VMIQRGLKKQVGYSTIDVENRSYLFSMGDKSHPETNEIYCYLDELMWRCKDAGYAPAPES 497

Query: 554 VLHNIKEEKEE-ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
            +H ++EE+ E AL  HSEKLA+AFGL++T  G T++IVK L IC DCHS +K+ S +  
Sbjct: 498 AMHELEEEEREYALRYHSEKLAVAFGLMKTCHGVTLRIVKNLRICEDCHSAIKFISVVMN 557

Query: 613 REIVLRDT-RFHYFKDGTCSCRDYW 636
           REI++RD  RFH+F++G+CSC DYW
Sbjct: 558 REIIVRDKLRFHHFREGSCSCSDYW 582


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 196/573 (34%), Positives = 286/573 (49%), Gaps = 90/573 (15%)

Query: 149 RGLHCLIVKSGVEYDAFV--RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206
           + +H  ++++G+ +D F   R+  A           A +VFD+ P  N    +  WN LI
Sbjct: 52  KQIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPN----LYTWNTLI 107

Query: 207 NGCSK--------------------------IGYLRKAV----ELF------GMMPKKNV 230
              +                             +L KA     ELF      GM+ K  +
Sbjct: 108 RAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLL 167

Query: 231 ASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQ 286
            S V    SLI  + + G+L     +F   P + VVSW +MI  F Q G  E+AL +F +
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN 346
           M    V+ N  T+V  LSACAK    E G  VH+YI  N       +  A++DMY KCG+
Sbjct: 228 METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGS 287

Query: 347 IEAASLVFGETKEKDLLTWTAMI------------WGLAIHGRYEQAIQYFKKMMYSGTE 394
           +E A  +F +  EKD+++WT M+             GLA+HG  + AI  F KM     +
Sbjct: 288 VEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVK 347

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-- 452
           P+   F  IL AC + G V+    FF+ M   Y + P VKH+  +V++L R G   +   
Sbjct: 348 PNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVE 407

Query: 453 -----------------------YQN---SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                                  ++N   ++ + ++L++L+P +  +YVLLSNIYA  G+
Sbjct: 408 LIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGK 467

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGARE 544
           W  V+ +R LM+   +KK+PG S IEV+G VH F  G   H  AK+I++KL++I+A    
Sbjct: 468 WDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLET 527

Query: 545 QGYMPGTEWVLHNIKEE--KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHS 602
            GY+P    +L  ++EE  KE+AL  HSEKLA+AFGLI T     I+IVK L +CGDCHS
Sbjct: 528 IGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHS 587

Query: 603 LMKYASKISQREIVLRDTRFHYFKDGTCSCRDY 635
           + K  SK+  REI+LRD  +     G  S  D+
Sbjct: 588 VAKLVSKLYDREILLRDRVWIVVDYGRISYEDF 620


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 214/699 (30%), Positives = 334/699 (47%), Gaps = 95/699 (13%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           IKS   PS   +  H I L          R+    I   N+F+ + I    I++ +    
Sbjct: 35  IKSFIPPSTYFS-NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAI----IAAYAKESR 89

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
              A  +FD     +L  +N LI   A+       +  F  M  + +  +  T   V   
Sbjct: 90  PLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDXFTLSAVI-- 147

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETPEKNKS 196
            A    + L   LH + V SG  +D++V V+  L   Y + G    A +VF         
Sbjct: 148 TACCDDVGLIGQLHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDE 205

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-----------ASWVSLID---GFMR 242
            S   WN +I    +     KA+ LF  M ++ +            ++  L D   G   
Sbjct: 206 VS---WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262

Query: 243 KGDLKKAG--------------------------ELFEQMPEKGVVSWTAMINGFSQNGE 276
            G L K G                          ++FE++ E  +V W  M++G+SQN E
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 277 -AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIG 334
             E AL  F QM   G R ND + V  +SAC+ + +   G ++H+    +D    + ++ 
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVD 382

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+ MY+KCGN++ A  +F    E + ++  +MI G A HG   +++  F+ M+     
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA 442

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-- 452
           P    F+++L+AC ++G+V+   N+F+ M+  + IEP  +H++ +++LL R G+ S+   
Sbjct: 443 PTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAEN 502

Query: 453 --------------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                                      + +  +  ++LQL+P + + YV+LSN+YA+ GR
Sbjct: 503 LIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGR 562

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGARE 544
           W++VA VR  M+ R +KK PG S+IEV   +H F  E   H + KEI+  LE++    + 
Sbjct: 563 WEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKR 622

Query: 545 QGYMPGTEWVLHNIKE------EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
            GY+P   W L  +K+      EKE  LG HSEKLA+AFGLI T  G  + +VK L ICG
Sbjct: 623 AGYVPDVRWAL--VKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICG 680

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCH+ +K+ S I+ REI +RD  RFH FK+G CSC DYW
Sbjct: 681 DCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/565 (32%), Positives = 299/565 (52%), Gaps = 83/565 (14%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQ---LGKTRGAFKVFDETPEKNKSESVLLWNV 204
           G+ +H  ++K+      ++R  L  +Y +   LG  RG   +FDE P++N    V+ W  
Sbjct: 81  GQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARG---MFDEMPQRN----VVSWTA 133

Query: 205 LINGCSKIGYLRKAVELFGMM------P-----------------------------KKN 229
           +I+  S+ G+  +A+ LF  M      P                             K+N
Sbjct: 134 MISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRN 193

Query: 230 VASWV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
             S +    SL+D + + G +  A  +F  +PE+ VV+ TA+I+G++Q G  E+AL +F 
Sbjct: 194 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 253

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           Q+   G+ +N  T  S L+A + + AL  G +VH+++  +       +  +L+DMY+KCG
Sbjct: 254 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 313

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAIL 404
           N+  A  +F    E+  ++W AM+ G + HG   + ++ FK M      +PD   +LA+L
Sbjct: 314 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVL 373

Query: 405 TACWYSGQVKLALN-FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN-SQNSFT- 461
           + C +     + L  F++ +     IEP + H+  VV+LL R G+  + +    +  F  
Sbjct: 374 SGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVP 433

Query: 462 --------------------------KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                                     KLL+L+P++  +YV+LSN+YA+ G+W+D+  +R 
Sbjct: 434 TAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRD 493

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAK--EIHSKLEDIMAGAREQGYMPGTEW 553
           LMQ +++ K+PG S++E++  VH F A  H   +  E+ +K++++    +E GY+P    
Sbjct: 494 LMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSC 553

Query: 554 VLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           VL+++ EE KE+ L  HSEKLALAFGLI T  GTTI+++K L IC DCHS  K+ S++  
Sbjct: 554 VLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYA 613

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
           R ++LRD  RFH    G CSC DYW
Sbjct: 614 RTVILRDKNRFHNIVGGVCSCGDYW 638



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 176/416 (42%), Gaps = 51/416 (12%)

Query: 40  SSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV 99
           S  + ++ +++H  +I      S  + T+LI   +    +  A  +FD    +N+  +  
Sbjct: 74  SQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNVVSWTA 133

Query: 100 LIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159
           +I   ++       ++ FV MLR    PN  T+  +  S         GR +H + +K  
Sbjct: 134 MISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRN 193

Query: 160 VEYDAFVRVHLADMYV-------------------------------QLGKTRGAFKVFD 188
            E   FV   L DMY                                Q+G    A K+F 
Sbjct: 194 YESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFR 253

Query: 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKG 244
           +   +  + + + +  ++   S +  L    ++   + +    S+V    SLID + + G
Sbjct: 254 QLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 313

Query: 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSAL 303
           ++  A  +F+ MPE+  +SW AM+ G+S++G A + L +F  M +   V+ +  T ++ L
Sbjct: 314 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVL 373

Query: 304 SACAKVGALEAGVRV-HNYISCNDFGLKGAIG--TALVDMYAKCGNIEAASLVFGETKEK 360
           S C+     + G+ + +N ++  D G++  IG    +VD+  + G +E A   F   K+ 
Sbjct: 374 SGCSHGQLEDMGLEIFYNMVNGKD-GIEPDIGHYGCVVDLLGRAGRVEEA---FDFIKKM 429

Query: 361 DLLTWTAMIWG-----LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411
             +  TA IWG       +H   E  I   +K++    EP+      IL+  + S 
Sbjct: 430 PFVP-TAAIWGSLLGSCRVHSDVEIGIIVGQKLL--ELEPENAGNYVILSNLYASA 482



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 133/282 (47%), Gaps = 20/282 (7%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++S  +P N+ T   I++  + S   +  RQIH+  I  N  +   + + L+   +    
Sbjct: 155 LRSDTEP-NHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGR 213

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A  +F     +++     +I G A+    +  +  F  +    +  N +TY  V  +
Sbjct: 214 ICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTA 273

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVH-LADMYVQLGKTRGAFKVFDETPEKNKSE 197
           ++ L+ L+ G+ +H  +++SG +Y   V ++ L DMY + G    A ++FD  PE+    
Sbjct: 274 LSGLAALNHGKQVHSHVLRSG-QYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPER---- 328

Query: 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA-----SWVSLIDGFMRKGDLKKAG-E 251
           + + WN ++ G SK G  R+ +ELF +M ++N       ++++++ G    G L+  G E
Sbjct: 329 TCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSG-CSHGQLEDMGLE 387

Query: 252 LFEQMP------EKGVVSWTAMINGFSQNGEAEKALAMFFQM 287
           +F  M       E  +  +  +++   + G  E+A     +M
Sbjct: 388 IFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKM 429



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 59/110 (53%)

Query: 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK 360
           S L+ C    A+  G RVH ++    +     + T L+ +Y KC  +  A  +F E  ++
Sbjct: 67  SILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQR 126

Query: 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410
           ++++WTAMI   +  G   +A+  F +M+ S TEP+   F  ILT+C+ S
Sbjct: 127 NVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGS 176


>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
          Length = 506

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 178/531 (33%), Positives = 277/531 (52%), Gaps = 69/531 (12%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQII----LHNLFASSRITTQLISSASLHKSIDY 81
           S++     I+S    + S  +L Q HA I+    +H+ FA+SR+    +S+ S  ++I Y
Sbjct: 2   SSSFPPPPILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIAS-VSTNSHAQAIPY 60

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A SIF      N +++N +IR  A +   ++ ++ F  ML  SV P++ T+ F  KS  S
Sbjct: 61  AHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGS 120

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
            S +  GR +H  ++K+G+  D F++                                  
Sbjct: 121 FSGVEEGRQIHGHVLKTGLGDDLFIQ---------------------------------- 146

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGE-LFEQMPEKG 260
            N LI+  +  G +  A  L   M +++V SW +L+  +  +G ++ A   +F + P K 
Sbjct: 147 -NTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKN 205

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSW AMI G+S  G   + L +F  M  AGV+ ++ T+VS LSACA VGAL  G  VH 
Sbjct: 206 VVSWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHA 265

Query: 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQ 380
           YI  N   + G + TALVDMY+KCG+IE A  VF     KD+ TW ++I GL+ HG  + 
Sbjct: 266 YIDKNGISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQH 325

Query: 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440
           A+Q F +M+  G +P+   F+ +L+AC  +G +      F+ M   + I+P+++H+  +V
Sbjct: 326 ALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMV 385

Query: 441 NLLSRVG----------------------------QDSQGYQNSQNSFTKLLQLKPKHPS 472
           +LL RVG                            ++    + ++    KLL+L P+  S
Sbjct: 386 DLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELAERVAQKLLELSPQESS 445

Query: 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           S+V LSN+YA+ GRWKDV  VR  M+ + ++KDPG S IEV+G V+ F AG
Sbjct: 446 SFVQLSNMYASMGRWKDVMEVRQKMRAQGVRKDPGCSMIEVDGTVYEFLAG 496


>gi|218185168|gb|EEC67595.1| hypothetical protein OsI_34962 [Oryza sativa Indica Group]
          Length = 838

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 150/443 (33%), Positives = 246/443 (55%), Gaps = 41/443 (9%)

Query: 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQ---------NGEAEKALAMFF 285
           +L+D F R G +    ++F+++    + +W A+++ +++         +  A+  L MF 
Sbjct: 396 ALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFV 455

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           +ML   ++ N+ T+V+ + AC ++GA+  GV  H Y       +   + TALV+MYA CG
Sbjct: 456 RMLSLAIKPNEITLVAVIGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCG 515

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405
            ++ A  VF    ++D   + AM+ GLA+HG    A+  F +M   G   DG   L+++ 
Sbjct: 516 RLDLAEQVFAAASDRDTRCYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMC 575

Query: 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ---------------DS 450
           AC ++G V   L++FD M  ++ IEPS++H+  +V++LSR G+               ++
Sbjct: 576 ACAHAGLVDEGLDYFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGMPIVPNA 635

Query: 451 QGYQN-------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497
             Y++              +    +L++L+P    ++VL+SN YA   RW D  + R  M
Sbjct: 636 AIYRSLIRACGIHGKLELGKKMIAELMRLEPDDSGNHVLISNFYATTNRWDDAKKARKEM 695

Query: 498 QRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVL 555
           +   I K PG S++++NG +H F  G   H  +KEI++ +EDI     E G+   T   L
Sbjct: 696 KSMGIDKSPGSSFVDINGVLHEFLVGDKTHPASKEIYAMVEDIETRLSECGHRSSTSSAL 755

Query: 556 HNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQRE 614
            +++EE K +AL  HSE+LA+AF LI + PG  I+I+K L +C DCH   K  S++  RE
Sbjct: 756 FDVEEEDKADALSYHSERLAIAFALIASNPGAPIRIIKNLRVCADCHESAKLVSRVYGRE 815

Query: 615 IVLRD-TRFHYFKDGTCSCRDYW 636
           IV+RD TRFH+F+DG CSC D+W
Sbjct: 816 IVMRDRTRFHHFRDGVCSCGDFW 838



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/252 (22%), Positives = 105/252 (41%), Gaps = 25/252 (9%)

Query: 85  IFDHFTPKNLHIFNVLIRGLAE---------NSHFQSCISHFVFMLRLSVRPNRLTYPFV 135
           +FD     +L  +N L+   A          +S   + +  FV ML L+++PN +T   V
Sbjct: 413 VFDRIANPDLPAWNALLSAYARLRARDVACASSAADAILEMFVRMLSLAIKPNEITLVAV 472

Query: 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK 195
             +   L  +S G   H   VK  +  +  V   L +MY   G+   A +VF    +++ 
Sbjct: 473 IGACGELGAVSHGVWAHTYAVKRRLAVNCIVATALVEMYAGCGRLDLAEQVFAAASDRDT 532

Query: 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGE 251
                 +N +++G +  G+ R A+ LF  M  + V     + +S++      G + +  +
Sbjct: 533 R----CYNAMLHGLAVHGHGRAALSLFDRMHGEGVPVDGVTVLSVMCACAHAGLVDEGLD 588

Query: 252 LFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306
            F++M      E  +  +  M++  S+ G    A  +   M    +  N     S + AC
Sbjct: 589 YFDRMEIEFGIEPSIEHYGCMVDMLSRAGRLNDAEKLIHGM---PIVPNAAIYRSLIRAC 645

Query: 307 AKVGALEAGVRV 318
              G LE G ++
Sbjct: 646 GIHGKLELGKKM 657



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 9/98 (9%)

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLA-IHGR------ 377
           N+      +G AL+D++A+CG I +   VF      DL  W A++   A +  R      
Sbjct: 385 NETSCDRVLGAALLDVFARCGRIASCRKVFDRIANPDLPAWNALLSAYARLRARDVACAS 444

Query: 378 --YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413
              +  ++ F +M+    +P+    +A++ AC   G V
Sbjct: 445 SAADAILEMFVRMLSLAIKPNEITLVAVIGACGELGAV 482


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/562 (31%), Positives = 298/562 (53%), Gaps = 77/562 (13%)

Query: 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           G+ +H  ++K+      ++   L  +Y +      A  VFDE  E+N    V+ W  +I+
Sbjct: 29  GQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERN----VVSWTAMIS 84

Query: 208 GCSKIGYLRKAVELFGMM------P-----------------------------KKNVAS 232
           G S+ G+  +A+ LF  M      P                             K+N  +
Sbjct: 85  GYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYEN 144

Query: 233 WV----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
            +    SL+D + + G + +A  +FE +PE+ VVS TA+I+G++Q G  E+AL +F ++ 
Sbjct: 145 HIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQ 204

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
             G+ +N  T  S L+A + + AL+ G +VH+++   +      +  +L+DMY+KCGN+ 
Sbjct: 205 REGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLN 264

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTAC 407
            A  +F     + +++W AM+ G + HG+  + ++ FK M      +PD   FLA+L+ C
Sbjct: 265 YARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGC 324

Query: 408 WYSGQVKLALNFFDSM-RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ------------ 454
            + G     L  FD M      IE  ++H+  V++LL R G+  + ++            
Sbjct: 325 SHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAA 384

Query: 455 -----------NSQNSF-----TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498
                      +S  +       +LL+++P++  +YV+LSN+YA+ GRW+DV  VR LM 
Sbjct: 385 IWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMM 444

Query: 499 RRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLH 556
            +++ K+PG S+IE++  +H F A    H   +E+  K+ +++   +E GY+P    VL+
Sbjct: 445 EKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLY 504

Query: 557 NIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREI 615
           ++ EE KE+ L  HSEKLALAFGLI T+ G  ++++K L IC DCH+  K+ SK+  R++
Sbjct: 505 DVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQV 564

Query: 616 VLRD-TRFHYFKDGTCSCRDYW 636
            +RD  RFH+   G CSC DYW
Sbjct: 565 SIRDKNRFHHVAGGICSCGDYW 586



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/209 (33%), Positives = 115/209 (55%), Gaps = 4/209 (1%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWV----SLIDGFMRKGDLKKAGELFEQMP 257
           +N+L+N C     +R+   +   M K      V     LI  + +   L  A  +F++M 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           E+ VVSWTAMI+G+SQ G A +AL +F QML +    N+FT  + LS+C      E G +
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H++I   ++     +G++L+DMYAK G I  A  VF    E+D+++ TA+I G A  G 
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLGL 192

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            E+A++ F ++   G   +   + ++LTA
Sbjct: 193 DEEALELFCRLQREGMSSNYVTYASLLTA 221



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 70/324 (21%), Positives = 145/324 (44%), Gaps = 37/324 (11%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHN----LFASSRITTQLISSAS 74
           ++S  +P N  T   ++S     +  +  RQIH+ I   N    +F  S +      +  
Sbjct: 103 LRSDTEP-NEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGR 161

Query: 75  LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134
           +H+    A  +F+    +++     +I G A+    +  +  F  + R  +  N +TY  
Sbjct: 162 IHE----ARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYAS 217

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           +  +++ L+ L  G+ +H  +++  + +   ++  L DMY + G    A K+F+  P + 
Sbjct: 218 LLTALSGLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVR- 276

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-----VASWVSLIDGFMRKGDLKKA 249
              +V+ WN ++ G SK G   + V+LF +M ++N       ++++++ G    G   K 
Sbjct: 277 ---TVISWNAMLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKG 333

Query: 250 GELFEQMP------EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303
            E+F++M       E G+  +  +I+   + G  E+A  +  +M         F   +A+
Sbjct: 334 LEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKM--------PFEPTAAI 385

Query: 304 SACAKVGALEAGVRVHNYISCNDF 327
                 G+L    RVH+  +  +F
Sbjct: 386 W-----GSLLGACRVHSNTNIGEF 404



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 58/105 (55%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362
           L+ C    A+  G RVH ++    +     + T L+ +Y KC  +  A  VF E +E+++
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76

Query: 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           ++WTAMI G +  G   +A+  F +M+ S TEP+   F  +L++C
Sbjct: 77  VSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSC 121


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 194/640 (30%), Positives = 316/640 (49%), Gaps = 72/640 (11%)

Query: 34  IISLIHSSNSTKQLRQIHAQII--LHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP 91
           +I    ++N+    R++H+ I+   H+      +   LI        + YA  +F+    
Sbjct: 66  LIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFESMPS 125

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV--SKSVASLSLLSLGR 149
           +N+H + V +   + N      +  F  M +   RP+R+T+  +  + +    + +  GR
Sbjct: 126 RNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGR 185

Query: 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209
            +H     SG+  +  V   +  MY + G+   A   F+E          L W       
Sbjct: 186 EIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEE----------LQW------- 228

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
                             KN  +W +++  +   G  ++A ELF +M +   V W AMI 
Sbjct: 229 ------------------KNSVTWNAMMTNYKLDGRDREALELFREMHDADSVCWNAMIA 270

Query: 270 GFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
            ++Q+G  ++AL ++  M D   +     T V+ +  CA++ AL+ G  +H  +   +F 
Sbjct: 271 AYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFD 330

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
               +  ALV MY KCG ++ A  VF   K KD ++W  +I   A HG  +QA+  +++M
Sbjct: 331 ANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEM 390

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
              G +P    F+ +L+AC + G V   L++F  M+ D+ I+PSV H   +++LL R G+
Sbjct: 391 DLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGR 450

Query: 449 --------DSQGYQNSQNSFTKLL-------QLK-------------PKHPSSYVLLSNI 480
                    S   Q +   +  LL        LK             P     YVLLSNI
Sbjct: 451 LAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNI 510

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDI 538
           YAA GRWKDV ++R +M  R +KK PG S+IE+   VH F +G   H   +EI+ +L  +
Sbjct: 511 YAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKM 570

Query: 539 MAGAREQGYMPGTEWVLHNIKEEKEEALG-CHSEKLALAFGLIQTTPGTTIKIVKKLTIC 597
           +   +  GY+P T  V H+++EE++E L  CHSEKLA+ +G +     + ++IVK L +C
Sbjct: 571 VEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVC 630

Query: 598 GDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636
            DCH+  K+ S+I+ R+IV+RD  RFH F++G+CSCRDYW
Sbjct: 631 LDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 670


>gi|297824259|ref|XP_002880012.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325851|gb|EFH56271.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 542

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 193/549 (35%), Positives = 285/549 (51%), Gaps = 76/549 (13%)

Query: 25  PSNN-ITETHIISLIHSSNST-KQLRQIHAQII----LHNLFASSRITTQLISSASLHKS 78
           PS+  ++    + LI +  ST ++L+QIHA +I    + +  A+SR+     +S S    
Sbjct: 17  PSSGFVSGNTCLRLIDTRCSTMRELKQIHANLIKTGLISDTVAASRVLAFCCASPSDR-- 74

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFML--RLSVRPNRLTYPFVS 136
            +YA  +F     KN  ++N +IRG + +S  +  IS F+ ML    SV+P RLTYP V 
Sbjct: 75  -NYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133

Query: 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196
           K+ ASL L   GR LH  ++K G+E D+F+R  +  MYV  G    A+++F         
Sbjct: 134 KAYASLGLARDGRQLHGRVIKEGLEDDSFIRNTMLHMYVTCGCLVEAWRLF--------- 184

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQM 256
                                     GMM   +V +W S+I G  + G + +A +LF++M
Sbjct: 185 -------------------------VGMM-GFDVVAWNSIIMGLAKCGLIDQAQKLFDEM 218

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           P++  VSW +MI+GF +NG  + AL MF +M +  V+ + FT+VS L+ACA +GA E G 
Sbjct: 219 PQRNGVSWNSMISGFVRNGRFKDALEMFREMQERDVKPDGFTMVSLLNACAYLGASEQGR 278

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
            +H YI  N F L   + TAL+DMY KCG  E    VF     K L  W +MI GLA +G
Sbjct: 279 WIHKYIVRNRFELNSIVITALIDMYCKCGCFEEGLKVFECAPTKQLSCWNSMILGLANNG 338

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             E+A+  F ++  +G EPD   F+ +LTAC +SG+V  A  FF  MR  Y IEPS+KH+
Sbjct: 339 CEERAMDLFLELERTGLEPDSVSFIGVLTACAHSGEVHKAGEFFRLMREKYMIEPSIKHY 398

Query: 437 TVVVNLLSRVG----------------------------QDSQGYQNSQNSFTKLLQLKP 468
           T +VN+L   G                            + +   + ++ +   L  L P
Sbjct: 399 TCMVNVLGGAGLLDEAEALIKKMPVEGDTIIWSSLLAACRKNGNVEMAKRAANCLKNLDP 458

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA 528
                YVL+SN YA+ G +++    R LM+ R ++K+ G S IEV+  VH F + G K  
Sbjct: 459 DETCGYVLMSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFVSCGKKHP 518

Query: 529 K--EIHSKL 535
           K  EI+S L
Sbjct: 519 KSTEIYSLL 527


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/565 (31%), Positives = 287/565 (50%), Gaps = 73/565 (12%)

Query: 145 LSLGRGLHCLIVKSG--VEYDAFVRVHLADMYVQLGKTRGAFKVF---DETPEKNK---- 195
           L  GR LH  +++S   V  +  ++  L  +Y   G+   A +VF   DE P +      
Sbjct: 86  LEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPVWVA 145

Query: 196 -----------SESVLLWNVLINGCSKIG------YLRKAVELFGMMPKKNVASWV---- 234
                       E++LL+  +++ C K G       L+   +L   +  + + + +    
Sbjct: 146 MAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHD 205

Query: 235 ----------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
                     +L+  ++  G   +  ++FE+MP++ VVSW  +I GF+  G   + L+ F
Sbjct: 206 VGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAF 265

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
             M   G+  +  T+ + L  CA+V AL +G  +H  I  +       +  +L+DMYAKC
Sbjct: 266 RVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKC 325

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G I     VF     KDL +W  M+ G +I+G+  +A+  F +M+  G EP+G  F+A+L
Sbjct: 326 GEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALL 385

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQN------ 458
           + C +SG        F ++  D+ ++PS++H+  +V++L R G+  +    ++N      
Sbjct: 386 SGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPS 445

Query: 459 ----------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                                    +L +++P +P +YV+LSNIYA  G W+DV RVR +
Sbjct: 446 GSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREM 505

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGGH---KLAKEIHSKLEDIMAGAREQGYMPGTEW 553
           M    +KKD G S+I++   +H F AGG    + + E      ++    +  GY+P T  
Sbjct: 506 MALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGV 565

Query: 554 VLHNIKEEKEEALGC-HSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           VLH+I EE +    C HSE+LA  F LI T  G  I+I K L +C DCHS MK  SK+++
Sbjct: 566 VLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTR 625

Query: 613 REIVLRDT-RFHYFKDGTCSCRDYW 636
           R IVLRDT RFH+F++G+CSC+DYW
Sbjct: 626 RLIVLRDTNRFHHFENGSCSCKDYW 650



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 112/246 (45%), Gaps = 14/246 (5%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLH-KSIDYALSIFDHFTPKNLHIFNVLIRGLAE 106
           R IHAQI+ H++  + ++    +    +     D  L +F+    +N+  +N LI G A 
Sbjct: 195 RAIHAQIVKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAG 254

Query: 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
                  +S F  M R  +  + +T   +    A ++ L  G+ +H  I+KS    D  +
Sbjct: 255 QGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPL 314

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226
              L DMY + G+     KVFD    K+ +     WN ++ G S  G + +A+ LF  M 
Sbjct: 315 LNSLMDMYAKCGEIGYCEKVFDRMHSKDLTS----WNTMLAGFSINGQIHEALCLFDEMI 370

Query: 227 K----KNVASWVSLIDGFMRKGDLKKAGELFEQ-MPEKGVVS----WTAMINGFSQNGEA 277
           +     N  ++V+L+ G    G   +   LF   M + GV      +  +++   ++G+ 
Sbjct: 371 RYGIEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKF 430

Query: 278 EKALAM 283
           ++AL++
Sbjct: 431 DEALSV 436



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 107/263 (40%), Gaps = 17/263 (6%)

Query: 29  ITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88
           IT T ++ +     +    ++IH QI+     A   +   L+   +    I Y   +FD 
Sbjct: 278 ITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDR 337

Query: 89  FTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLG 148
              K+L  +N ++ G + N      +  F  M+R  + PN +T+  +    +   L S G
Sbjct: 338 MHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEG 397

Query: 149 RGLHCLIVKS-GVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLIN 207
           + L   +++  GV+        L D+  + GK   A  V +  P +       +W  L+N
Sbjct: 398 KRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGS---IWGSLLN 454

Query: 208 GCSKIGYLR----KAVELFGMMPKKNVASWVSLIDGFMRKG---DLKKAGEL--FEQMPE 258
            C   G +      A  LF + P  N  ++V L + +   G   D+K+  E+     M +
Sbjct: 455 SCRLYGNVALAEVVAERLFEIEP-NNPGNYVMLSNIYANAGMWEDVKRVREMMALTGMKK 513

Query: 259 KGVVSWTAM---INGFSQNGEAE 278
               SW  +   I+ F   G ++
Sbjct: 514 DAGCSWIQIKHKIHTFVAGGSSD 536


>gi|334182333|ref|NP_172105.4| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
 gi|8810477|gb|AAF80138.1|AC024174_20 Contains similarity to an unknown protein T5J8.5 gi|4263522 from
            Arabidopsis thaliana BAC T5J8 gb|AC004044 and contains
            multiple PPR PF|01535 repeats. ESTs gb|AV565358,
            gb|AV558710, gb|AV524184 come from this gene [Arabidopsis
            thaliana]
 gi|332189826|gb|AEE27947.1| uncharacterized basic helix-loop-helix protein [Arabidopsis thaliana]
          Length = 1322

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 284/549 (51%), Gaps = 37/549 (6%)

Query: 37   LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
            +I   ++ K L    A +I  +L    R+  Q I++ +  K +D A+S        N+ +
Sbjct: 779  IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKRLDLAVSTMTQMQEPNVFV 838

Query: 97   FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
            +N L +G    SH    +  +V MLR SV P+  TY  + K+ +  S    G  L   I 
Sbjct: 839  YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS--RFGESLQAHIW 896

Query: 157  KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
            K G  +   ++  L D Y   G+ R A KVFDE PE++     + W  +++   ++  + 
Sbjct: 897  KFGFGFHVKIQTTLIDFYSATGRIREARKVFDEMPERDD----IAWTTMVSAYRRVLDMD 952

Query: 217  KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
             A  L   M +KN A+   LI+G+M  G+L++A  LF QMP K ++SWT MI G+SQN  
Sbjct: 953  SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 1012

Query: 277  AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
              +A+A+F++M++ G+  ++ T+ + +SACA +G LE G  VH Y   N F L   IG+A
Sbjct: 1013 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 1072

Query: 337  LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
            LVDMY+KCG++E A LVF    +K+L  W ++I GLA HG  ++A++ F KM     +P+
Sbjct: 1073 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 1132

Query: 397  GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
               F+++ TAC ++G V      + SM  DY I  +V+H+  +V+L S+ G   +  +  
Sbjct: 1133 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 1192

Query: 457  QN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
             N                            +F KL+ L+P +   Y LL ++YA + RW+
Sbjct: 1193 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 1252

Query: 489  DVARVRTLMQRRSIKKD-PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
            DVA +R  M+   I+K  PG S I ++   H F A    H  + E+   L++I       
Sbjct: 1253 DVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLA 1312

Query: 546  GYMPGTEWV 554
            GY+  TE V
Sbjct: 1313 GYVQETENV 1321


>gi|222632633|gb|EEE64765.1| hypothetical protein OsJ_19621 [Oryza sativa Japonica Group]
          Length = 656

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/593 (31%), Positives = 302/593 (50%), Gaps = 43/593 (7%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS-VRPNRLTYPFVSKSVA 140
           A  +FD    +N    N+L+ G A +   +  ++    +LR++    N         + A
Sbjct: 69  ARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALA----LLRVADFGLNEYVLSSAVAATA 124

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
            +    +GR  H   +K+G+    +V   +  MY Q      A K   +  EK ++    
Sbjct: 125 HVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSC 184

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQM 256
           +   ++  C+    +    ++     K+    NV    +L+D + +     +A  +FE +
Sbjct: 185 VICRVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVL 244

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
           PEK +VSWTA++  ++QN   E AL +F  M   GVR N+FT   AL++CA +  L+ G 
Sbjct: 245 PEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGN 304

Query: 317 RVHNY-ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            +    +    +GL   +  AL++MY+K G++E A  VF     +D+++W ++I G A H
Sbjct: 305 ALGACTMKTGHWGLL-PVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHH 363

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435
           GR  +A++ F  M+++   P    F+ +L+AC   G V     + + M  +  ++P  +H
Sbjct: 364 GRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEH 423

Query: 436 HTVVVNLLSRVGQ-------------------------DSQGYQN---SQNSFTKLLQLK 467
           +T +V LL RVG+                           Q Y+N         ++ QLK
Sbjct: 424 YTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLK 483

Query: 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGH 525
           PK   +YVLLSN+YA   RW  V +VR LM+   ++K+PG S+I+V   VH F  E   H
Sbjct: 484 PKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKH 543

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQTTP 584
              ++I  KL++++   +  GY+P     LH++++E KEE L  HSEKLALAFGLI+T  
Sbjct: 544 PYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPK 603

Query: 585 GTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           G  I+I+K + IC DCH  +K  S  + R IV+RDT RFH  +DG CSC DYW
Sbjct: 604 GEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW 656



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 120/271 (44%), Gaps = 16/271 (5%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           LSLG+ +H  +V++   +D     +L  +YV+ G+   A +VFD  P +N        N+
Sbjct: 32  LSLGKAVHARVVRAA-RFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSG----NL 86

Query: 205 LINGCSKIGYLRKAVEL-----FGMMPKKNVASWVSLIDGFMRKGDLKKAGELF---EQM 256
           L++G +  G  R A+ L     FG+   + V S        +R  D+ +    +     +
Sbjct: 87  LMSGYASSGRHRDALALLRVADFGL--NEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGL 144

Query: 257 PEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316
            E   V  +A+++ + Q    ++A+    +  +         +   L  CA    +  G 
Sbjct: 145 AEHPYVC-SAVLHMYCQCAHMDEAVKYSKKHGEKCRAMGSCVICRVLGHCASTKEVVLGS 203

Query: 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHG 376
           +VH         L   +G+ALVDMY KC     A+ VF    EK++++WTA++     + 
Sbjct: 204 QVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNE 263

Query: 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
            +E A+Q F  M   G  P+   +   L +C
Sbjct: 264 LFEDALQLFLDMEMEGVRPNEFTYAVALNSC 294


>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
          Length = 537

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/522 (31%), Positives = 279/522 (53%), Gaps = 43/522 (8%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
           T+    +L     S +Q++Q+HA ++L    + S    +LI  S+  +     +A  +FD
Sbjct: 7   TQRQQPALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFD 66

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-------LSVRPNRLTYPFVSKSVA 140
                +  ++N LIRG A +   +  +S +  M R       +++RP++ T+PFV ++ A
Sbjct: 67  RIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACA 126

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           ++     G  +H  +VK+G E DAFVR  L  M+  LG    A  +FD        E  +
Sbjct: 127 AMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD----GEAREDAV 182

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
            W+ +I+G ++ G +  A ELF   P K++ SW  +I  + + GD+  A ELF+  P++ 
Sbjct: 183 AWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRD 242

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSW AMI+G+ + G  ++A+ +F QM   G + +  T++S LSACA  G L+AG R+H 
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302

Query: 321 YISC--NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           ++S   +  G   A+G AL+DMYAKCG++ +A  VF   ++K++ TW ++I GLA+HG  
Sbjct: 303 FLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHA 362

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            ++I  F+KM+    +PD   F+A+L AC + G V     +F  M+  Y IEP++KH+  
Sbjct: 363 TESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGC 422

Query: 439 VVNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKH 470
           +V++LSR G   + ++                             ++++  +LL+ +   
Sbjct: 423 MVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDA 482

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
              +VLLSNIYA+ G W     +R LM    + K+ G + I+
Sbjct: 483 SGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524


>gi|7362769|emb|CAB83139.1| putative protein [Arabidopsis thaliana]
          Length = 558

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 190/566 (33%), Positives = 294/566 (51%), Gaps = 90/566 (15%)

Query: 79  IDYALSIFDHFTPKNLHIF--NVLIRGLAEN---SHFQSCISHFVFMLRLSVRPNRLTYP 133
           I YA  IF H     L  F  N++IR +  N       S IS ++ M    V P+  T+P
Sbjct: 8   IAYANPIF-HIRHLKLESFLWNIIIRAIVHNVSSPQRHSPISVYLRMRNHRVSPDFHTFP 66

Query: 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK 193
           F+  S  +   L LG+  H  I+  G++ D FVR  L +MY                   
Sbjct: 67  FLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMY------------------- 107

Query: 194 NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF 253
                           S  G LR A  +F     K++ +W S+++ + + G +  A +LF
Sbjct: 108 ----------------SSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLF 151

Query: 254 EQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML-----DAGVRANDFTVVSALSACAK 308
           ++MPE+ V+SW+ +ING+   G+ ++AL +F +M      +A VR N+FT+ + LSAC +
Sbjct: 152 DEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGR 211

Query: 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGET-KEKDLLTWTA 367
           +GALE G  VH YI      +   +GTAL+DMYAKCG++E A  VF     +KD+  ++A
Sbjct: 212 LGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSA 271

Query: 368 MIWGLAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFD 426
           MI  LA++G  ++  Q F +M  S    P+   F+ IL AC + G +    ++F  M  +
Sbjct: 272 MICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEE 331

Query: 427 YFIEPSVKHHTVVVNLLSRVG--QDSQGY--------------------------QNSQN 458
           + I PS++H+  +V+L  R G  ++++ +                          +  + 
Sbjct: 332 FGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEG 391

Query: 459 SFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518
           +  +L++L P +  +YVLLSN+YA  GRW +            I K PG SY+EV G VH
Sbjct: 392 ALKRLIELDPMNSGAYVLLSNVYAKTGRWME-----------GINKVPGCSYVEVEGVVH 440

Query: 519 RFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLAL 575
            F  G    + ++ I++ L++IM   RE GY+  T+ VL ++ E +KE AL  HSEKLA+
Sbjct: 441 EFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAI 500

Query: 576 AFGLIQTTPGTTIKIVKKLTICGDCH 601
           AF L++T PGT ++I+K L ICGDCH
Sbjct: 501 AFCLMKTRPGTPVRIIKNLRICGDCH 526


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/565 (30%), Positives = 290/565 (51%), Gaps = 77/565 (13%)

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L  G+ +H  ++K+      ++R  L   Y +      A KV DE PEKN    V+ W  
Sbjct: 67  LREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN----VVSWTA 122

Query: 205 LINGCSKIGYLRKAVELFGMMPKKN------------------------------VASW- 233
           +I+  S+ G+  +A+ +F  M + +                              +  W 
Sbjct: 123 MISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWN 182

Query: 234 --------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFF 285
                    SL+D + + G +++A E+FE +PE+ VVS TA+I G++Q G  E+AL MF 
Sbjct: 183 YDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQ 242

Query: 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345
           ++   G+R N  T  S L+A + +  L+ G + H ++   +      +  +L+DMY+KCG
Sbjct: 243 RLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 302

Query: 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAIL 404
           N+  A  +F    E+  ++W AM+ G + HG   + ++ F+ M      +PD    LA+L
Sbjct: 303 NLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 362

Query: 405 TACWYSGQVKLALNFFDSM-RFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK- 462
           + C +       L+ +D M   +Y I+P  +H+  +V++L R G+  + ++  +   +K 
Sbjct: 363 SGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKP 422

Query: 463 ---------------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495
                                      L++++P++  +YV+LSN+YA+ GRW+DV  VR 
Sbjct: 423 TAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRA 482

Query: 496 LMQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEW 553
           +M ++++ K+PG S+I+    +H F A    H   +E+ +K+++I    ++ GY+P    
Sbjct: 483 MMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISC 542

Query: 554 VLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
           VL+++ EE KE+ L  HSEKLAL FGLI T  G  I++ K L IC DCH+  K  SK+ +
Sbjct: 543 VLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFE 602

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
           RE+ LRD  RFH    G CSC DYW
Sbjct: 603 REVSLRDKNRFHQIVKGICSCGDYW 627



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 119/209 (56%), Gaps = 4/209 (1%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSL---IDGFMRKGD-LKKAGELFEQMP 257
           ++ L+N C     LR+   +   M K        L   +  F  K D L+ A ++ ++MP
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317
           EK VVSWTAMI+ +SQ G + +AL++F +M+ +  + N+FT  + L++C +   L  G +
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQ 173

Query: 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377
           +H  I   ++     +G++L+DMYAK G IE A  +F    E+D+++ TA+I G A  G 
Sbjct: 174 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGL 233

Query: 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTA 406
            E+A++ F+++   G  P+   + ++LTA
Sbjct: 234 DEEALEMFQRLQSEGMRPNYVTYASLLTA 262



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 102/207 (49%), Gaps = 5/207 (2%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++S  KP+     T + S I +S      +QIH  I+  N  +   + + L+   +    
Sbjct: 144 MRSDGKPNEFTFATVLTSCIRASGLALG-KQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQ 202

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I+ A  IF+    +++     +I G A+    +  +  F  +    +RPN +TY  +  +
Sbjct: 203 IEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTA 262

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
           ++ L+LL  G+  HC +++  + + A ++  L DMY + G    A ++FD  PE+    +
Sbjct: 263 LSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER----T 318

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMM 225
            + WN ++ G SK G  R+ +ELF +M
Sbjct: 319 AISWNAMLVGYSKHGLGREVLELFRLM 345



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 68/140 (48%), Gaps = 3/140 (2%)

Query: 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF 327
           I+    NG  ++AL    +M+  G         + L+AC    AL  G RVH ++    +
Sbjct: 26  ISQLCSNGRLQEAL---LEMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRY 82

Query: 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387
                + T L+  Y KC  +E A  V  E  EK++++WTAMI   +  G   +A+  F +
Sbjct: 83  LPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAE 142

Query: 388 MMYSGTEPDGTVFLAILTAC 407
           MM S  +P+   F  +LT+C
Sbjct: 143 MMRSDGKPNEFTFATVLTSC 162


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 155/440 (35%), Positives = 253/440 (57%), Gaps = 32/440 (7%)

Query: 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML 288
           N+    +L+D + + G +K A ++FE M +K  V+W++M+ G+ QN   E+AL ++ +  
Sbjct: 196 NLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQ 255

Query: 289 DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
              +  N FT+ S + AC+ + AL  G ++H  I  + FG    + ++ VDMYAKCG++ 
Sbjct: 256 RMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLR 315

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            + ++F E +EK+L  W  +I G A H R ++ +  F+KM   G  P+   F ++L+ C 
Sbjct: 316 ESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCG 375

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN------------- 455
           ++G V+    FF  MR  Y + P+V H++ +V++L R G  S+ Y+              
Sbjct: 376 HTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIW 435

Query: 456 ---------------SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                          ++ +  KL +L+P++  ++VLLSNIYAA  +W+++A+ R L++  
Sbjct: 436 GSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDC 495

Query: 501 SIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
            +KK  G S+I++   VH F  G  GH   +EI S L++++   R+ GY P  E  LH++
Sbjct: 496 DVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDV 555

Query: 559 K-EEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
           +  +KEE L  HSEKLAL FGL+     + ++I+K L IC DCH  MK AS  ++R I++
Sbjct: 556 EIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIV 615

Query: 618 RDT-RFHYFKDGTCSCRDYW 636
           RD  RFH+F DG CSC D+W
Sbjct: 616 RDVNRFHHFSDGHCSCGDFW 635



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 116/206 (56%), Gaps = 10/206 (4%)

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSL----IDGFMRKGDLKKAGELFEQMPEKGVVSW 264
           C++ G + +A    G + + ++   V+L    I+ + + G ++ A ++F+ M E+ +VSW
Sbjct: 71  CARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSW 130

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVH--NY 321
             MI  +++N    +AL +F +M + G + ++FT+ S LSAC     ALE   ++H  + 
Sbjct: 131 NTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECK-KLHCLSV 189

Query: 322 ISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381
            +C D  L   +GTAL+D+YAKCG I+ A  VF   ++K  +TW++M+ G   +  YE+A
Sbjct: 190 KTCIDLNL--YVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEA 247

Query: 382 IQYFKKMMYSGTEPDGTVFLAILTAC 407
           +  +++      E +     +++ AC
Sbjct: 248 LLLYRRAQRMSLEQNQFTLSSVICAC 273



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 100/208 (48%), Gaps = 17/208 (8%)

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           I  A+ +F+    K+   ++ ++ G  +N +++  +  +    R+S+  N+ T   V  +
Sbjct: 213 IKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICA 272

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
            ++L+ L  G+ +H +I KSG   + FV     DMY + G  R ++ +F E  EKN    
Sbjct: 273 CSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKN---- 328

Query: 199 VLLWNVLINGCSKIGYLRKAVELF------GMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252
           + LWN +I+G +K    ++ + LF      GM P  N  ++ SL+      G +++    
Sbjct: 329 LELWNTIISGFAKHARPKEVMILFEKMQQDGMHP--NEVTFSSLLSVCGHTGLVEEGRRF 386

Query: 253 FEQMP-----EKGVVSWTAMINGFSQNG 275
           F+ M         VV ++ M++   + G
Sbjct: 387 FKLMRTTYGLSPNVVHYSCMVDILGRAG 414



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 6/125 (4%)

Query: 288 LDAGVRANDFT----VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343
           +  G  +N+F+    V   L  CA+ GA+      H  I   D      +   L++ Y+K
Sbjct: 49  VSPGRYSNEFSNRNLVHEILQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSK 108

Query: 344 CGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE-QAIQYFKKMMYSGTEPDGTVFLA 402
           CG +E A  VF    E+ L++W  MI GL    R E +A+  F +M   G +       +
Sbjct: 109 CGFVELARQVFDGMLERSLVSWNTMI-GLYTRNRMESEALDIFLEMRNEGFKFSEFTISS 167

Query: 403 ILTAC 407
           +L+AC
Sbjct: 168 VLSAC 172


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 164/500 (32%), Positives = 272/500 (54%), Gaps = 37/500 (7%)

Query: 174 YVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233
           YV +     A  ++ E  E+        +  L   C+ +  + + +++ G + K+ +   
Sbjct: 60  YVNVMNMENALFLYYEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGD 119

Query: 234 V----SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
           +    SLI+ + + G ++ +  +FE M  + V SW+A+I   +  G   + L++F +M  
Sbjct: 120 LFVQNSLINMYGKCGKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSR 179

Query: 290 AG-VRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348
            G  R  +  +VS LSAC  +GAL+ G   H  +  N   +   + T+L+DMY KCG IE
Sbjct: 180 EGSCRPEESILVSVLSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIE 239

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
               +F    +K+ L+++ MI GLA+HGR  +A+Q F  M+  G +PD  V+L +L+AC 
Sbjct: 240 KGLSLFQRMVKKNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACN 299

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK------ 462
           ++G V   L  F+ M+ ++ IEP+++H+  +V+L+ R G  ++  ++ ++   K      
Sbjct: 300 HAGLVDEGLQCFNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVW 359

Query: 463 ----------------------LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500
                                 L +L   +P  YV+LSN+YA   RW+DVA++RT M R+
Sbjct: 360 RGLLSACKFHHNLEIGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARK 419

Query: 501 SIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI 558
              + PG+S ++V   +++F  +   H   K ++  +  +    + +GY P T  VL ++
Sbjct: 420 GFTQTPGFSLVQVERKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDV 479

Query: 559 -KEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVL 617
            +EEK + L  HS+KLA+AF LI T+ G  I+I + L +C DCH+  K  S I QREI +
Sbjct: 480 DEEEKRQRLKAHSQKLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITV 539

Query: 618 RD-TRFHYFKDGTCSCRDYW 636
           RD  RFH+FKDGTCSCRDYW
Sbjct: 540 RDRNRFHHFKDGTCSCRDYW 559



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 126/300 (42%), Gaps = 17/300 (5%)

Query: 26  SNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85
           S+N T   +     S  S ++  QIH  I    L     +   LI+       I+ + S+
Sbjct: 83  SDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSV 142

Query: 86  FDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-SVRPNRLTYPFVSKSVASLSL 144
           F+H   +++  ++ +I   A    +  C+S F  M R  S RP       V  +   L  
Sbjct: 143 FEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSVLSACTHLGA 202

Query: 145 LSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNV 204
           L LGR  H  ++++  E +  V+  L DMYV+ G       +F    +KN+    L ++V
Sbjct: 203 LDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQ----LSYSV 258

Query: 205 LINGCSKIGYLRKAVELFGMMPKKNVAS----WVSLIDGFMRKGDLKKAGELFEQMP--- 257
           +I G +  G   +A+++F  M ++ +      ++ ++      G + +  + F +M    
Sbjct: 259 MITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNRMKLEH 318

Query: 258 --EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
             E  +  +  +++   + G   KAL     M    ++ N+      LSAC     LE G
Sbjct: 319 GIEPTIQHYGCIVHLMGRAGMLNKALEHIRSM---PIKPNEVVWRGLLSACKFHHNLEIG 375


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 214/699 (30%), Positives = 334/699 (47%), Gaps = 95/699 (13%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           IKS   PS   +  H I L          R+    I   N+F+ + I    I++ +    
Sbjct: 35  IKSFIPPSTYFS-NHFILLYSKCGRLAWARKAFQDISDPNVFSFNAI----IAAYAKESR 89

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
              A  +FD     +L  +N LI   A+       +  F  M  + +  +  T   V   
Sbjct: 90  PLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSGMREMGLDMDGFTLSAVI-- 147

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVH--LADMYVQLGKTRGAFKVFDETPEKNKS 196
            A    + L   LH + V SG  +D++V V+  L   Y + G    A +VF         
Sbjct: 148 TACCDDVGLIGQLHSVAVSSG--FDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDE 205

Query: 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV-----------ASWVSLID---GFMR 242
            S   WN +I    +     KA+ LF  M ++ +            ++  L D   G   
Sbjct: 206 VS---WNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAFTCLEDLSGGLQF 262

Query: 243 KGDLKKAG--------------------------ELFEQMPEKGVVSWTAMINGFSQNGE 276
            G L K G                          ++FE++ E  +V W  M++G+SQN E
Sbjct: 263 HGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEE 322

Query: 277 -AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIG 334
             E AL  F QM   G R ND + V  +SAC+ + +   G ++H+    +D    + ++ 
Sbjct: 323 FLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVD 382

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
            AL+ MY+KCGN++ A  +F    E + ++  +MI G A HG   +++  F+ M+     
Sbjct: 383 NALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIA 442

Query: 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG-- 452
           P    F+++L+AC ++G+V+   N+F+ M+  + IEP  +H++ +++LL R G+ S+   
Sbjct: 443 PTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMIDLLGRAGKLSEAEN 502

Query: 453 --------------------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486
                                      + +  +  ++LQL+P + + YV+LSN+YA+ GR
Sbjct: 503 LIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAPYVVLSNMYASAGR 562

Query: 487 WKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRF--EAGGHKLAKEIHSKLEDIMAGARE 544
           W++VA VR  M+ R +KK PG S+IEV   +H F  E   H + KEI+  LE++    + 
Sbjct: 563 WEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEIYEFLEEMSGKMKR 622

Query: 545 QGYMPGTEWVLHNIKE------EKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICG 598
            GY+P   W L  +K+      EKE  LG HSEKLA+AFGLI T  G  + +VK L ICG
Sbjct: 623 AGYVPDVRWAL--VKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEPVLVVKNLRICG 680

Query: 599 DCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           DCH+ +K+ S I+ REI +RD  RFH FK+G CSC DYW
Sbjct: 681 DCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719


>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
 gi|219886289|gb|ACL53519.1| unknown [Zea mays]
          Length = 537

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/522 (31%), Positives = 279/522 (53%), Gaps = 43/522 (8%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
           T+    +L     S +Q++Q+HA ++L    + S    +LI  S+  +     +A  +FD
Sbjct: 7   TQRQQPALWRRCRSLRQIKQVHALMVLQGFLSDSSALRELIFASAVGVRGGTAHARLVFD 66

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-------LSVRPNRLTYPFVSKSVA 140
                +  ++N LIRG A +   +  +S +  M R       +++RP++ T+PFV ++ A
Sbjct: 67  RIPHPDRFMYNTLIRGAAHSDAPRDAVSIYARMARHSADCDLMTLRPDKRTFPFVLRACA 126

Query: 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200
           ++     G  +H  +VK+G E DAFVR  L  M+  LG    A  +FD        E  +
Sbjct: 127 AMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALFD----GEAREDAV 182

Query: 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260
            W+ +I+G ++ G +  A ELF   P K++ SW  +I  + + GD+  A ELF+  P++ 
Sbjct: 183 AWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRD 242

Query: 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320
           VVSW AMI+G+ + G  ++A+ +F QM   G + +  T++S LSACA  G L+AG R+H 
Sbjct: 243 VVSWNAMISGYVRCGSRKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDLDAGRRLHG 302

Query: 321 YISC--NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           ++S   +  G   A+G AL+DMYAKCG++ +A  VF   ++K++ TW ++I GLA+HG  
Sbjct: 303 FLSGRFSRIGPTTALGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHA 362

Query: 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438
            ++I  F+KM+    +PD   F+A+L AC + G V     +F  M+  Y IEP++KH+  
Sbjct: 363 TESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQRYRIEPNIKHYGC 422

Query: 439 VVNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKH 470
           +V++LSR G   + ++                             ++++  +LL+ +   
Sbjct: 423 MVDMLSRGGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGEIELAEHANRELLKARSDA 482

Query: 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
              +VLLSNIYA+ G W     +R LM    + K+ G + I+
Sbjct: 483 SGDFVLLSNIYASVGEWPGSENMRKLMDDSGVNKEAGRAVID 524


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 202/666 (30%), Positives = 319/666 (47%), Gaps = 88/666 (13%)

Query: 56  LHNLFASSRIT--------TQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           LHN   S  +T          LI++ + H  I  A  +FD     ++  +N LI   A+ 
Sbjct: 60  LHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADR 119

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
                 +  F  +  L +  +  T   V  +      + L R LHC +V  G +  A V 
Sbjct: 120 GECGPTLRLFEEVRELRLGLDGFTLSGVITACGDD--VGLVRQLHCFVVVCGHDCYASVN 177

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK-------IGYLRKAV- 219
             +   Y + G    A +VF E  E    + V  WN +I  C +       +G  R+ V 
Sbjct: 178 NAVLACYSRKGFLSEARRVFREMGEGGGRDEVS-WNAMIVACGQHREGMEAVGLFREMVR 236

Query: 220 ---------------------------ELFGMMPKK----NVASWVSLIDGFMR-KGDLK 247
                                      +  GMM K     N      LID + +  G + 
Sbjct: 237 RGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMV 296

Query: 248 KAGELFEQMPEKGVVSWTAMINGFSQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSAC 306
           +  ++FE++    +V W  MI+GFS   + +E  L  F +M   G R +D + V   SAC
Sbjct: 297 ECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSAC 356

Query: 307 AKVGALEAGVRVHNYISCNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW 365
           + + +   G +VH     +D    + ++  ALV MY+KCGN+  A  VF    E + ++ 
Sbjct: 357 SNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSL 416

Query: 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425
            +MI G A HG   ++++ F+ M+     P+   F+A+L+AC ++G+V+    +F+ M+ 
Sbjct: 417 NSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKE 476

Query: 426 DYFIEPSVKHHTVVVNLLSRVGQDSQG----------------------------YQNSQ 457
            + IEP  +H++ +++LL R G+  +                              + + 
Sbjct: 477 RFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAV 536

Query: 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHV 517
            +  + L+L+P + + YV+LSN+YA+  RW++ A V+ LM+ R +KK PG S+IE++  V
Sbjct: 537 KAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKV 596

Query: 518 HRF--EAGGHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE----EKEEALGCHSE 571
           H F  E   H + KEIH  +  ++   ++ GY+P   W L   +E    E+E  L  HSE
Sbjct: 597 HVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSE 656

Query: 572 KLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTC 630
           KLA+AFGLI T  G  I +VK L ICGDCH+ +K  S ++ REI +RDT RFH FK+G C
Sbjct: 657 KLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHC 716

Query: 631 SCRDYW 636
           SCRDYW
Sbjct: 717 SCRDYW 722



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 99/201 (49%), Gaps = 7/201 (3%)

Query: 210 SKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269
           SK G L  A   F +    NV S+ +LI+ + +   +  A  +F+++P+  +VS+  +I 
Sbjct: 55  SKCGSLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIA 114

Query: 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVHNYISCNDFG 328
            ++  GE    L +F ++ +  +  + FT+   ++AC   VG +    ++H ++      
Sbjct: 115 AYADRGECGPTLRLFEEVRELRLGLDGFTLSGVITACGDDVGLVR---QLHCFVVVCGHD 171

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVF---GETKEKDLLTWTAMIWGLAIHGRYEQAIQYF 385
              ++  A++  Y++ G +  A  VF   GE   +D ++W AMI     H    +A+  F
Sbjct: 172 CYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLF 231

Query: 386 KKMMYSGTEPDGTVFLAILTA 406
           ++M+  G + D     ++LTA
Sbjct: 232 REMVRRGLKVDMFTMASVLTA 252


>gi|296085287|emb|CBI29019.3| unnamed protein product [Vitis vinifera]
          Length = 408

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 166/445 (37%), Positives = 240/445 (53%), Gaps = 70/445 (15%)

Query: 225 MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284
           MP++N+ SW S++ GF++ G++++A  LF +MP + VVSW +M+  ++Q G+  +ALA+F
Sbjct: 1   MPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALF 60

Query: 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344
            QM   GV +                                      +GTALVDMYAKC
Sbjct: 61  DQMQAVGVNS-------------------------------------IVGTALVDMYAKC 83

Query: 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404
           G I  A+ VF   + KD+L W  +I G+AI G  ++A Q FK+M  +G EP+   F+A+L
Sbjct: 84  GKISLATQVFNAMESKDVLAWNTIIAGMAILGHVKEAQQLFKEMKEAGVEPNDITFVAML 143

Query: 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG------------ 452
           +AC ++G V       D M   Y IEP V+H+  V++LL+R G   +             
Sbjct: 144 SACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGLLEEAMELIGTMPMEPN 203

Query: 453 ----------------YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496
                           ++  +    +L+ L+P H   Y+LLSNIYAA  +W D  +VR L
Sbjct: 204 PCALGALLEGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNL 263

Query: 497 MQRRSIKKDPGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ-GYMPGTEW 553
           M+   I K PG S IE+ G VHRF AG   H  + +I+ KL +I    +   GY   T  
Sbjct: 264 MKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGN 323

Query: 554 VLHNIKEE-KEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQ 612
            L +++EE KE AL  HSEKLA+A+GL+       I+IVK L +C DCH + K  SK+  
Sbjct: 324 GLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYG 383

Query: 613 REIVLRD-TRFHYFKDGTCSCRDYW 636
            EI++RD  RFH+F+DG CSC D+W
Sbjct: 384 GEIIVRDRNRFHHFEDGECSCLDFW 408



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 112/235 (47%), Gaps = 41/235 (17%)

Query: 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW----------------- 233
           PE+N    ++ WN +++G  K G + +A  LF  MP ++V SW                 
Sbjct: 2   PERN----LVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEAL 57

Query: 234 ----------------VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277
                            +L+D + + G +  A ++F  M  K V++W  +I G +  G  
Sbjct: 58  ALFDQMQAVGVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAILGHV 117

Query: 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--T 335
           ++A  +F +M +AGV  ND T V+ LSAC+  G ++ G ++ + +S + +G++  +    
Sbjct: 118 KEAQQLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS-SSYGIEPKVEHYG 176

Query: 336 ALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
            ++D+ A+ G +E A  + G    E +     A++ G  IHG +E      K+++
Sbjct: 177 CVIDLLARAGLLEEAMELIGTMPMEPNPCALGALLEGCRIHGNFELGEMVGKRLI 231



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 31/190 (16%)

Query: 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219
           V  ++ V   L DMY + GK   A +VF+      +S+ VL WN +I G + +G++++A 
Sbjct: 66  VGVNSIVGTALVDMYAKCGKISLATQVFNAM----ESKDVLAWNTIIAGMAILGHVKEAQ 121

Query: 220 ELFGMMPKKNVA----SWVSLIDGFMRKGDLKKAGELFEQMP-----EKGVVSWTAMING 270
           +LF  M +  V     ++V+++      G + +  +L + M      E  V  +  +I+ 
Sbjct: 122 QLFKEMKEAGVEPNDITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDL 181

Query: 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330
            ++ G  E+A+ +              T+    + CA +GAL  G R+H      +F L 
Sbjct: 182 LARAGLLEEAMELI------------GTMPMEPNPCA-LGALLEGCRIH-----GNFELG 223

Query: 331 GAIGTALVDM 340
             +G  L+++
Sbjct: 224 EMVGKRLINL 233


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 172/553 (31%), Positives = 292/553 (52%), Gaps = 75/553 (13%)

Query: 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214
           +V +G E D ++R  +  M+V+ G    A ++FDE P +N     + W  +I+G    G 
Sbjct: 158 MVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARN----AVSWGTIISGYVDSGN 213

Query: 215 LRKAVELFGMM--------------------------PKKNVASW-------------VS 235
             +A  LF +M                          P + + S               +
Sbjct: 214 YVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGLGQDIFVSCA 273

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           LID + + G L+ A  +F++MP+K +V W ++I G++ +G +E+AL ++ +M D+GV+ +
Sbjct: 274 LIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMD 333

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            FT    +  C+++ ++    +VH  +  N FGL     TALVD Y+K G ++ A  VF 
Sbjct: 334 HFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFD 393

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
               +++++W A+I G   HG  E+AI  F+KM+  G  P+   FLA+L+AC  SG  + 
Sbjct: 394 RMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACSISGLFER 453

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY--------QNSQNSFTKLLQ-- 465
               F SM  D+ ++P   H   ++ LL R G   + Y        Q + N +  LL+  
Sbjct: 454 GWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMWAALLRAC 513

Query: 466 ------------------LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPG 507
                             ++P+  S+Y++L NIY + G+ K+ A V   ++R+ ++  P 
Sbjct: 514 RVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPA 573

Query: 508 WSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTE-WVLHNIKEEKEE 564
            S+IEVN   H F +G   H   +++  K++++M    + GY+P  + ++L ++ E +E+
Sbjct: 574 CSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNISKLGYVPEEQNFMLPDVDENEEK 633

Query: 565 ALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFH 623
               HSEKLA+A+GL+ T   T ++IV+   IC DCHS++K  + I++REIV+RD +RFH
Sbjct: 634 IRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHSVIKLIAMITKREIVIRDASRFH 693

Query: 624 YFKDGTCSCRDYW 636
           +F+DG+CSC DYW
Sbjct: 694 HFRDGSCSCGDYW 706



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 176/385 (45%), Gaps = 48/385 (12%)

Query: 82  ALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141
           A  +FD    +N   +  +I G  ++ ++      F+ M          T+  + ++ A 
Sbjct: 186 ACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAG 245

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           L ++  GR LH   +K+G+  D FV   L DMY + G    A  VFDE P+K    +++ 
Sbjct: 246 LEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDK----TIVG 301

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNV---------------------------ASWV 234
           WN +I G +  GY  +A++L+  M    V                           AS V
Sbjct: 302 WNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLV 361

Query: 235 ------------SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282
                       +L+D + + G +  A  +F++M  + ++SW A+I G+  +G  E+A+ 
Sbjct: 362 RNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAID 421

Query: 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA-LVDMY 341
           MF +ML  G+  N  T ++ LSAC+  G  E G  +   ++ +      A+  A ++++ 
Sbjct: 422 MFEKMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELL 481

Query: 342 AKCGNI-EAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TV 399
            + G + EA +L+     +     W A++    +HG  E   ++  + +Y G EP+  + 
Sbjct: 482 GREGLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELG-KFAAEKLY-GMEPEKLSN 539

Query: 400 FLAILTACWYSGQVKLALNFFDSMR 424
           ++ +L     SG++K A + F +++
Sbjct: 540 YIVLLNIYNSSGKLKEAADVFQTLK 564



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/212 (28%), Positives = 105/212 (49%), Gaps = 8/212 (3%)

Query: 202 WNVLINGCSKIGYLRKAVELFGMM------PKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255
           ++ LIN C  +  +R    L   M      P + + + V L+   ++ G +  A  LF++
Sbjct: 135 YDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMH--VKCGMMIDACRLFDE 192

Query: 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315
           MP +  VSW  +I+G+  +G   +A  +F  M +        T  + + A A +  +  G
Sbjct: 193 MPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPG 252

Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH 375
            ++H+       G    +  AL+DMY+KCG++E A  VF E  +K ++ W ++I G A+H
Sbjct: 253 RQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALH 312

Query: 376 GRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407
           G  E+A+  + +M  SG + D   F  I+  C
Sbjct: 313 GYSEEALDLYHEMRDSGVKMDHFTFSIIIRIC 344



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 79/343 (23%), Positives = 143/343 (41%), Gaps = 39/343 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           RQ+H+  I   L     ++  LI   S   S++ A  +FD    K +  +N +I G A +
Sbjct: 253 RQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALH 312

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVR 167
            + +  +  +  M    V+ +  T+  + +  + L+ ++  + +H  +V++G   D    
Sbjct: 313 GYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVAN 372

Query: 168 VHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELF----- 222
             L D Y + GK   A  VFD    +N    ++ WN LI G    G+  +A+++F     
Sbjct: 373 TALVDFYSKWGKVDDARHVFDRMSCRN----IISWNALIAGYGNHGHGEEAIDMFEKMLR 428

Query: 223 -GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVS-----WTAMINGFSQNGE 276
            GMMP  N  ++++++      G  ++  E+F+ M     V      +  MI    + G 
Sbjct: 429 EGMMP--NHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGL 486

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-- 334
            ++A A+        +R   F   + + A     AL    RVH  +    F  +   G  
Sbjct: 487 LDEAYAL--------IRKAPFQPTANMWA-----ALLRACRVHGNLELGKFAAEKLYGME 533

Query: 335 -------TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370
                    L+++Y   G ++ A+ VF   K K L    A  W
Sbjct: 534 PEKLSNYIVLLNIYNSSGKLKEAADVFQTLKRKGLRMLPACSW 576



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 122/266 (45%), Gaps = 24/266 (9%)

Query: 19  IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS 78
           ++ S    ++ T + II +     S  + +Q+HA ++ +         T L+   S    
Sbjct: 325 MRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGK 384

Query: 79  IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138
           +D A  +FD  + +N+  +N LI G   + H +  I  F  MLR  + PN +T+  V  S
Sbjct: 385 VDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAV-LS 443

Query: 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVR---VHLADMYVQLGKT---RGAFKVFDETPE 192
             S+S L   RG     +   +  D  V+   +H A M   LG+      A+ +  + P 
Sbjct: 444 ACSISGL-FERGWE---IFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPF 499

Query: 193 KNKSESVLLWNVLINGCSKIGYLR----KAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248
           +  +    +W  L+  C   G L      A +L+GM P+K +++++ L++ +   G LK+
Sbjct: 500 QPTAN---MWAALLRACRVHGNLELGKFAAEKLYGMEPEK-LSNYIVLLNIYNSSGKLKE 555

Query: 249 AGELFEQMPEKGV-----VSWTAMIN 269
           A ++F+ +  KG+      SW  + N
Sbjct: 556 AADVFQTLKRKGLRMLPACSWIEVNN 581



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)

Query: 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF--FQMLDAGVRANDFTVVS 301
           GD +K   L E   +K  V   + I       +   AL MF  F++ D G      T  +
Sbjct: 80  GD-RKETPLKETHVKKSSVGICSQIEKLVLCKKYRDALEMFEIFELED-GFHVGYSTYDA 137

Query: 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD 361
            ++AC  + ++    R+ NY+  N F     +   ++ M+ KCG +  A  +F E   ++
Sbjct: 138 LINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARN 197

Query: 362 LLTWTAMIWGLAIHGRYEQAIQYFKKM 388
            ++W  +I G    G Y +A + F  M
Sbjct: 198 AVSWGTIISGYVDSGNYVEAFRLFILM 224


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 327/659 (49%), Gaps = 76/659 (11%)

Query: 48  RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAEN 107
           R+IH  I    L +   ++  L+       S++ A  +F+    KN+  + +LI   A++
Sbjct: 54  RRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQH 113

Query: 108 SHFQSCISHFVFMLRLSVRPNRLTY-PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV 166
              Q  ++ F  ML+  ++P+ +++   ++   A    L  GR LH L+ + G +     
Sbjct: 114 GRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVA 173

Query: 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IGYLRKAVELF 222
              L  MY + G    + K F+   E N     + WN +I   ++    +  LR   ++F
Sbjct: 174 TTSLVSMYSKCGSLEESVKTFESMTELN----AVSWNAMIAAFAEHRRGLEALRTLQKMF 229

Query: 223 GMMPKKNVASWVSLI----------------DGFMRKG-----------------DLKKA 249
               +    ++++L+                D  +R G                  L+ A
Sbjct: 230 LEGIRACSVTYITLMSAYDQPSQLKSARYIHDCILRTGFDQDVVNVILNMYGKCGCLQDA 289

Query: 250 GELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309
             +F+ M +  V++W  MI  +SQ+G   +AL  +  M + GV  +D+T VS + ACA +
Sbjct: 290 EAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATL 349

Query: 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMI 369
           G +E G +VH  +    F +   +  +LV+MY KCG ++ A  +F +T  K  +TW AMI
Sbjct: 350 GDMEVGKQVHRRLGDRAFQVT-ELANSLVNMYGKCGILDVARSIFDKTA-KGSVTWNAMI 407

Query: 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI 429
              A H   +QA + F  M   G EP    F+++L+AC  +G  + A ++F  M+ D+ +
Sbjct: 408 GAYAQHSHEQQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGV 467

Query: 430 EPSVKHHTVVVNLLSRVGQDS------QGYQNSQNSFT---------------------- 461
            P   H+  +V  L + G+ S      QG     +  T                      
Sbjct: 468 RPGGGHYGCMVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAK 527

Query: 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521
             +++ P+  + YV L+ I+A  G +++ +R+R LM  R I+K+ G S I++   V+ F 
Sbjct: 528 GAIRIDPEASTGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFT 587

Query: 522 AG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKE-EKEEALGCHSEKLALAFG 578
           AG   +  +KEI  +L+ +    +  GY P    V H+++  +KE  L  HSE+LA+AFG
Sbjct: 588 AGDQSNPRSKEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFG 647

Query: 579 LIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
           +I T+ GT ++I+K L +CGDCH++ K  SKI++REI++RD+ RFH+FK+G+CSC+D+W
Sbjct: 648 IISTSQGTPLRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 149/321 (46%), Gaps = 46/321 (14%)

Query: 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194
           V +S A L  L+ GR +H LI + G+  D +V  HL  MY + G    A  VF+ TP KN
Sbjct: 40  VIQSCARLGALAEGRRIHQLIRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 195 KSESVLLWNVLINGCSKIGYLRKAVELF------GMMP---------------------- 226
               V  W +LI  C++ G  ++A+ LF      G+ P                      
Sbjct: 100 ----VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAG 155

Query: 227 ------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274
                       +  V +  SL+  + + G L+++ + FE M E   VSW AMI  F+++
Sbjct: 156 RALHALLRRYGFQDAVVATTSLVSMYSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEH 215

Query: 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG 334
               +AL    +M   G+RA   T ++ +SA  +   L++   +H+ I     G    + 
Sbjct: 216 RRGLEALRTLQKMFLEGIRACSVTYITLMSAYDQPSQLKSARYIHDCIL--RTGFDQDVV 273

Query: 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394
             +++MY KCG ++ A  +F    + D++ W  MI   + HG   +A+++++ M   G  
Sbjct: 274 NVILNMYGKCGCLQDAEAMFKSMSQPDVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVV 333

Query: 395 PDGTVFLAILTACWYSGQVKL 415
           PD   +++++ AC   G +++
Sbjct: 334 PDDYTYVSVIDACATLGDMEV 354



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 180/369 (48%), Gaps = 26/369 (7%)

Query: 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVAS--W 233
           QLG+   A     +  + +  E V +    I  C+++G L +   +  ++ +  + S  +
Sbjct: 15  QLGQIAAAIDALQKRKDADLKECVRV----IQSCARLGALAEGRRIHQLIRRVGLGSDVY 70

Query: 234 VS--LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291
           VS  L+  + + G L++A  +FE  P K V SWT +I   +Q+G +++ALA+F++ML  G
Sbjct: 71  VSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALALFYEMLKQG 130

Query: 292 VRANDFTVVSALSAC-AKVGALEAGVRVHNYISCNDFGLKGAI--GTALVDMYAKCGNIE 348
           ++ +  +  +A++AC A    L AG  +H  +    +G + A+   T+LV MY+KCG++E
Sbjct: 131 IQPHSVSFTAAINACSAGPEFLPAGRALHALL--RRYGFQDAVVATTSLVSMYSKCGSLE 188

Query: 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408
            +   F    E + ++W AMI   A H R  +A++  +KM   G       ++ +++A  
Sbjct: 189 ESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTYITLMSAYD 248

Query: 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468
              Q+K A    D +    F +  V    V++N+  + G      Q+++  F  + Q  P
Sbjct: 249 QPSQLKSARYIHDCILRTGFDQDVV---NVILNMYGKCG----CLQDAEAMFKSMSQ--P 299

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLA 528
              +   +++  Y+  G   +  R   LMQ   +  D  ++Y+ V         G  ++ 
Sbjct: 300 DVIAWNTMIA-AYSQHGHTSEALRFYELMQEEGVVPDD-YTYVSVIDACATL--GDMEVG 355

Query: 529 KEIHSKLED 537
           K++H +L D
Sbjct: 356 KQVHRRLGD 364



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 97/202 (48%), Gaps = 8/202 (3%)

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324
           + +++   Q G+   A+    +  DA ++      V  + +CA++GAL  G R+H  I  
Sbjct: 7   STLLSKRQQLGQIAAAIDALQKRKDADLK----ECVRVIQSCARLGALAEGRRIHQLIRR 62

Query: 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384
              G    +   LV MY KCG++E A LVF  T  K++ +WT +I   A HGR ++A+  
Sbjct: 63  VGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALAL 122

Query: 385 FKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444
           F +M+  G +P    F A + AC    +   A     ++   Y  + +V   T +V++ S
Sbjct: 123 FYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYS 182

Query: 445 RVGQDSQGYQNSQNSFTKLLQL 466
           + G      + S  +F  + +L
Sbjct: 183 KCGS----LEESVKTFESMTEL 200


>gi|62321090|dbj|BAD94184.1| hypothetical protein [Arabidopsis thaliana]
          Length = 577

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 180/549 (32%), Positives = 283/549 (51%), Gaps = 37/549 (6%)

Query: 37  LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI 96
           +I   ++ K L    A +I  +L    R+  Q I++ +  K +D A+S        N+ +
Sbjct: 34  IIKQCSTPKLLESALAAMIKTSLNQDCRLMNQFITACTSFKCLDLAVSTMTQMQEPNVFV 93

Query: 97  FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156
           +N L +G    SH    +  +V MLR SV P+  TY  + K+ +  S    G  L   I 
Sbjct: 94  YNALFKGFVTCSHPIRSLELYVRMLRDSVSPSSYTYSSLVKASSFAS--RFGESLQAHIW 151

Query: 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLR 216
           K G  +   ++  L D Y   G  R A KVFDE PE++     + W  +++   ++  + 
Sbjct: 152 KFGFGFHVKIQTTLIDFYSATGGIREARKVFDEMPERDD----IAWTTMVSAYRRVLDMD 207

Query: 217 KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276
            A  L   M +KN A+   LI+G+M  G+L++A  LF QMP K ++SWT MI G+SQN  
Sbjct: 208 SANSLANQMSEKNEATSNCLINGYMGLGNLEQAESLFNQMPVKDIISWTTMIKGYSQNKR 267

Query: 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTA 336
             +A+A+F++M++ G+  ++ T+ + +SACA +G LE G  VH Y   N F L   IG+A
Sbjct: 268 YREAIAVFYKMMEEGIIPDEVTMSTVISACAHLGVLEIGKEVHMYTLQNGFVLDVYIGSA 327

Query: 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396
           LVDMY+KCG++E A LVF    +K+L  W ++I GLA HG  ++A++ F KM     +P+
Sbjct: 328 LVDMYSKCGSLERALLVFFNLPKKNLFCWNSIIEGLAAHGFAQEALKMFAKMEMESVKPN 387

Query: 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456
              F+++ TAC ++G V      + SM  DY I  +V+H+  +V+L S+ G   +  +  
Sbjct: 388 AVTFVSVFTACTHAGLVDEGRRIYRSMIDDYSIVSNVEHYGGMVHLFSKAGLIYEALELI 447

Query: 457 QN----------------------------SFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488
            N                            +F KL+ L+P +   Y LL ++YA + RW+
Sbjct: 448 GNMEFEPNAVIWGALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWR 507

Query: 489 DVARVRTLMQRRSIKKD-PGWSYIEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQ 545
           DVA +R  M+   I+K  PG S I ++   H F A    H  + E+   L++I       
Sbjct: 508 DVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLA 567

Query: 546 GYMPGTEWV 554
           GY+  TE V
Sbjct: 568 GYVQETENV 576


>gi|413946759|gb|AFW79408.1| hypothetical protein ZEAMMB73_086527 [Zea mays]
          Length = 865

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 182/594 (30%), Positives = 304/594 (51%), Gaps = 54/594 (9%)

Query: 93  NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLH 152
           +L  +N ++ G A +   +        ML   + P+  +   + KSVASL LL+ G   H
Sbjct: 276 SLATWNAVLSGCARHGRDREAFGVVRSMLERGIPPDSSSMSSLLKSVASLGLLAHGMEAH 335

Query: 153 CLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212
           C  ++  +E D +      DMY + G+   A KVFD    +N    +  WN L+ G S  
Sbjct: 336 CFFLRHRLEPDVYTGTAFVDMYAKCGRLEYAQKVFDTLELRN----ITTWNSLVAGYSNA 391

Query: 213 GYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGELFEQMPEKG----VVSW 264
           G    A++L   M +     ++ +W  LI G+   G   +A  L  QM   G    VVSW
Sbjct: 392 GQFDHALDLVEEMKRNRLDPDITTWNGLISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSW 451

Query: 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY-IS 323
           T++I+G   NG+ E +   F +M    V+ +  T+   L ACA +  L  G  +H + + 
Sbjct: 452 TSLISGSCHNGDYEDSFYFFNEMQKDHVQPSVVTMSVLLRACAGLALLAKGKELHCFALR 511

Query: 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-EKDLLTWTAMIWGLAIHGRYEQAI 382
              +     + TAL+DMY+K GN+ +A+ +F   + EK+L++W AM+ GLA HG+  +AI
Sbjct: 512 RRAYDRDMVVATALIDMYSKSGNLASATRIFERIQEEKNLVSWNAMLTGLAAHGQGREAI 571

Query: 383 QYFKKMMY------SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
             F  M        +G +PD   F A+LTAC     +    ++FD+M   Y + P+V+++
Sbjct: 572 ALFDDMCSASAGAGAGLKPDSITFTALLTACRSMELITEGWDYFDAMESRYGVTPTVENY 631

Query: 437 TVVVNLLSRVG--QDSQGYQN--------------------------SQNSFTKLLQLKP 468
             +V+LL+R G   ++  + N                          ++ +  KL +L+P
Sbjct: 632 ACMVDLLARCGYLDEATDFINRSPFKSAASLWGALLTGCVVHGNLALAEAAARKLFKLEP 691

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG---H 525
            + ++Y+ + ++Y  E  + +   ++  M+ R++   PGWS+I++   +H F+  G   H
Sbjct: 692 YNSANYLQMVSLYEREQMFDEAESLKYAMKARALNTRPGWSWIQIEQSIHVFQVEGKPPH 751

Query: 526 KLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGLIQT-T 583
               EI+ +L  ++   R+ GY+  T  + +N+ EE KE+ L  H+EKLA+ +GLI +  
Sbjct: 752 PDTAEIYQQLVRLVLQIRKAGYVADTSCIAYNVPEEDKEKLLLSHTEKLAITYGLIHSDA 811

Query: 584 PGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRDT-RFHYFKDGTCSCRDYW 636
            GT I+++K   +C DCH + K+ S +  R+I+LRD  RFH+F DG CSC D W
Sbjct: 812 SGTPIRVIKNTRMCSDCHEVAKHISALCGRQIILRDADRFHHFTDGKCSCNDRW 865



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 85/384 (22%), Positives = 158/384 (41%), Gaps = 72/384 (18%)

Query: 96  IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLI 155
           ++N  +  LAE   +   I+ F  M    V P+         +         G+ +H   
Sbjct: 140 LWNKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHA 199

Query: 156 VKSG-VEYDAFVRVHLADMYVQ---LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK 211
            K+G V     V   LA MY +   +G  R   +  D  P        + WNV++  C++
Sbjct: 200 AKAGHVAAHPLVPGFLAGMYAESADVGAARRVLETEDAPP--------VAWNVVVACCAR 251

Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF 271
           +G +  A++L   M                R G ++ +  L          +W A+++G 
Sbjct: 252 LGLVDDALDLAERM---------------ARSGPVEASPSL---------ATWNAVLSGC 287

Query: 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331
           +++G   +A  +   ML+ G+  +  ++ S L + A +G L  G+  H +   +      
Sbjct: 288 ARHGRDREAFGVVRSMLERGIPPDSSSMSSLLKSVASLGLLAHGMEAHCFFLRHRLEPDV 347

Query: 332 AIGTALVDMYAKCGNIEAASLVFGETK--------------------------------- 358
             GTA VDMYAKCG +E A  VF   +                                 
Sbjct: 348 YTGTAFVDMYAKCGRLEYAQKVFDTLELRNITTWNSLVAGYSNAGQFDHALDLVEEMKRN 407

Query: 359 --EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416
             + D+ TW  +I G +++GR  QA+   ++M   G  P+   + ++++   ++G  + +
Sbjct: 408 RLDPDITTWNGLISGYSMNGRSSQAVLLLRQMKAIGLTPNVVSWTSLISGSCHNGDYEDS 467

Query: 417 LNFFDSMRFDYFIEPSVKHHTVVV 440
             FF+ M+ D+ ++PSV   +V++
Sbjct: 468 FYFFNEMQKDH-VQPSVVTMSVLL 490



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 104/243 (42%), Gaps = 9/243 (3%)

Query: 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323
           W   +   ++  E   A+A F +M   GV  + +    AL AC + GA   G  VH + +
Sbjct: 141 WNKRVAMLAEAEEWGDAIAAFAEMRARGVAPDGYACARALHACGRAGAPREGQAVHAHAA 200

Query: 324 -CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382
                     +   L  MYA+  ++ AA  V  ET++   + W  ++   A  G  + A+
Sbjct: 201 KAGHVAAHPLVPGFLAGMYAESADVGAARRVL-ETEDAPPVAWNVVVACCARLGLVDDAL 259

Query: 383 QYFKKMMYSG---TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
              ++M  SG     P    + A+L+ C   G+ + A     SM  +  I P     + +
Sbjct: 260 DLAERMARSGPVEASPSLATWNAVLSGCARHGRDREAFGVVRSM-LERGIPPDSSSMSSL 318

Query: 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499
           +  ++ +G  + G +   + F    +L+P   +    + ++YA  GR +   +V   ++ 
Sbjct: 319 LKSVASLGLLAHGME--AHCFFLRHRLEPDVYTGTAFV-DMYAKCGRLEYAQKVFDTLEL 375

Query: 500 RSI 502
           R+I
Sbjct: 376 RNI 378


>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
          Length = 636

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 270/525 (51%), Gaps = 49/525 (9%)

Query: 34  IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHK--SIDYALSIFDHFTP 91
           ++S +   +S K++ Q    I    LF    + +++IS  SL    S+ YA +IF+    
Sbjct: 115 LLSKLQQLSSVKEVEQTQCLITKSGLFNHPFVISKIISFLSLSPLGSLVYAQAIFEDTAM 174

Query: 92  KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA----------- 140
            N  + N +IR  A++      I  + FM R  ++ +  TYPF  K+ A           
Sbjct: 175 DNPFVCNTMIRAYAKSVFPIKAIYLYNFMHRKDIKSDHFTYPFGLKACARVLWCNEGDIK 234

Query: 141 --SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES 198
              L +   G  +HC + + G++ D F++  L  +Y Q G    A  VFDE  EK    +
Sbjct: 235 CTQLDIACKGAEIHCRLFRLGLDQDCFIQNSLVYLYSQCGFLDLARCVFDEMTEK----T 290

Query: 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
           +  WNV+I+   +I     A  L G MP KNV SW  LI  ++R G ++ A  +F++MPE
Sbjct: 291 ITSWNVMISAYDQINDFDSADSLIGSMPGKNVVSWNMLIARYIRLGKIEDAKVVFQEMPE 350

Query: 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318
           +  VSW +MI G+ Q  +  +ALA+F +M  A V A D T++S L ACA+ GALE G ++
Sbjct: 351 RDAVSWNSMIAGYVQIKDYARALALFREMEIANVEATDITLISVLGACAETGALEIGRKI 410

Query: 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRY 378
           H  +   ++ ++G +  ALVDMYAKCG++  A  VF E K K +  W AMI  LA+HG  
Sbjct: 411 HLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISCWNAMIVSLAVHGYC 470

Query: 379 EQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH 436
           E+A++ F  M  S  G  P+   F+ +L AC + G V     FF+ M  +Y I P +KH+
Sbjct: 471 EEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHY 530

Query: 437 TVVVNLLSRVGQDSQGYQ---------NS-------------------QNSFTKLLQLKP 468
             +V+LLSR G   + +          NS                   + SF +L +++P
Sbjct: 531 GCMVDLLSRCGLLKEAHHMIKTMPFEANSVLWRTLLGACRVHHHVDLAEESFQQLGKMEP 590

Query: 469 KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEV 513
                YVLLSNIYA   RW DV RVR+ M    + K PG S+I +
Sbjct: 591 LRDGDYVLLSNIYAEAQRWNDVERVRSEMIGSGVPKKPGSSHIGI 635


>gi|147860852|emb|CAN83162.1| hypothetical protein VITISV_022557 [Vitis vinifera]
          Length = 562

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 153/430 (35%), Positives = 236/430 (54%), Gaps = 29/430 (6%)

Query: 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295
           +I   M+ G+   A  +F +M  + VV+W +MI G  +N   E+AL  F +ML++ V  +
Sbjct: 133 IIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLNSNVEPD 192

Query: 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355
            FT  S ++ CA++G+      VH  +      L   + +AL+D+Y+KCG I  A  VF 
Sbjct: 193 GFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINTAKKVFN 252

Query: 356 ETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL 415
             +  D+  W +MI GLAIHG    AI  F +M      PD   F+ ILTAC + G V+ 
Sbjct: 253 SIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILTACSHCGLVEQ 312

Query: 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY---------------------- 453
              +FD MR  Y I+P ++H+  +V+LL R G   + Y                      
Sbjct: 313 GRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKAMPMEPDIVIWRALLSAC 372

Query: 454 ---QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510
              +N +     + ++   +   Y+LLSN+Y +  +W    RVR +M+R  ++K+ G S+
Sbjct: 373 RNFKNPELGEVAIAKISHLNSGDYILLSNMYCSLEKWDSAERVREMMKRDGVRKNRGRSW 432

Query: 511 IEVNGHVHRFEAG--GHKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNI-KEEKEEALG 567
           +E+ G +H+F+AG   H     I+  LE ++   + +G+MP T+ VL ++  EE+EE L 
Sbjct: 433 VELGGVIHQFKAGDRSHPETGAIYKVLEGLIRRTKLEGFMPATDLVLMDVSDEEREENLN 492

Query: 568 CHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626
            HSEKLALA+ +++T+PGT I++ K L  C DCH  MK  S++  R I++RD  RFH F+
Sbjct: 493 SHSEKLALAYVILKTSPGTEIRVSKNLRTCHDCHCWMKILSRLLSRVIIVRDRIRFHQFE 552

Query: 627 DGTCSCRDYW 636
            G CSCRDYW
Sbjct: 553 GGLCSCRDYW 562



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 8/194 (4%)

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLID 238
           A + F E    N       +  +INGC+++G    A  + G+M +K    N     +LID
Sbjct: 177 ALRFFREMLNSNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALID 236

Query: 239 GFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298
            + + G +  A ++F  +    V  W +MING + +G A  A+ +F QM    V  +  T
Sbjct: 237 LYSKCGRINTAKKVFNSIQHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSIT 296

Query: 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG--TALVDMYAKCGNIEAA-SLVFG 355
            +  L+AC+  G +E G R  + +    + ++  +    A+VD+  + G +E A +++  
Sbjct: 297 FIGILTACSHCGLVEQGRRYFDLMR-RHYSIQPQLEHYGAMVDLLGRAGLVEEAYAMIKA 355

Query: 356 ETKEKDLLTWTAMI 369
              E D++ W A++
Sbjct: 356 MPMEPDIVIWRALL 369



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 65/263 (24%), Positives = 117/263 (44%), Gaps = 21/263 (7%)

Query: 65  ITTQLISSASLHK--SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR 122
           IT  LI  ASL K    D+A  +F     +++  +N +I G   N  F+  +  F  ML 
Sbjct: 128 ITANLII-ASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREMLN 186

Query: 123 LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRG 182
            +V P+  T+  V    A L        +H L+++  ++ +  +   L D+Y + G+   
Sbjct: 187 SNVEPDGFTFASVINGCARLGSSHHAELVHGLMIEKKIQLNFILSSALIDLYSKCGRINT 246

Query: 183 AFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA----SWVSLID 238
           A KVF+      + + V +WN +ING +  G    A+ +F  M  ++V+    +++ ++ 
Sbjct: 247 AKKVFNSI----QHDDVSVWNSMINGLAIHGLALDAIGVFSQMEMESVSPDSITFIGILT 302

Query: 239 GFMRKGDLKKAGELFEQMP-----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR 293
                G +++    F+ M      +  +  + AM++   + G  E+A A    M+ A   
Sbjct: 303 ACSHCGLVEQGRRYFDLMRRHYSIQPQLEHYGAMVDLLGRAGLVEEAYA----MIKAMPM 358

Query: 294 ANDFTVVSA-LSACAKVGALEAG 315
             D  +  A LSAC      E G
Sbjct: 359 EPDIVIWRALLSACRNFKNPELG 381



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 33/138 (23%)

Query: 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC------------------ 344
           L AC          + H  I    +G   ++ T+LV  YA C                  
Sbjct: 66  LEACKFSSDFRTAFQSHAKIIKFGYGTYPSLITSLVSTYAHCDCLDLAHQLLDEMPYWGF 125

Query: 345 ---------------GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389
                          G  + A  VF +   +D++TW +MI G   + R+E+A+++F++M+
Sbjct: 126 DLITANLIIASLMKVGEFDFAKRVFRKMLRRDVVTWNSMIGGCVRNERFEEALRFFREML 185

Query: 390 YSGTEPDGTVFLAILTAC 407
            S  EPDG  F +++  C
Sbjct: 186 NSNVEPDGFTFASVINGC 203


>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
 gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
          Length = 531

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 276/521 (52%), Gaps = 42/521 (8%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLI--SSASLHKSIDYALSIFD 87
           TE    +L     S +Q++Q+HA ++L    +      +LI  SS  +     +A  +FD
Sbjct: 7   TERRQPALWRRCRSLRQIKQVHALMVLRGFLSDPSALRELIFASSVGVRGGTAHARLVFD 66

Query: 88  HFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLS------VRPNRLTYPFVSKSVAS 141
                +  ++N LIRG A +   +  +S +  M R S      VRP++ T+PFV ++ A+
Sbjct: 67  RIPHPDRFMYNTLIRGAAHSYAPRDAVSIYARMARHSAGCGGGVRPDKRTFPFVLRACAA 126

Query: 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL 201
           +     G  +H  +VK+G E DAFVR  L  M+   G    A  +FD        E  + 
Sbjct: 127 MGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALFD----GEAREDAVA 182

Query: 202 WNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV 261
           W+ +I+G ++ G +  A ELF   P K++ SW  +I  + + GD+  A ELF+  P++ V
Sbjct: 183 WSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARELFDGAPDRDV 242

Query: 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNY 321
           VSW AMI+G+ + G  ++A+ +F QM   G + +  T++S LSACA  G ++AG R+H +
Sbjct: 243 VSWNAMISGYVRCGSHKQAMELFEQMQAMGEKPDTVTMLSLLSACADSGDMDAGRRLHRF 302

Query: 322 ISC--NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379
           +S   +  G    +G AL+DMYAKCG++ +A  VF   ++K++ TW ++I GLA+HG   
Sbjct: 303 LSGRFSRIGPSTVLGNALIDMYAKCGSMTSALEVFWLMQDKNVSTWNSIIGGLALHGHVT 362

Query: 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439
           +AI  F+KM+    +PD   F+A+L AC + G V     +F+ M+  Y IEP+VKH+  +
Sbjct: 363 EAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQRYMIEPNVKHYGCM 422

Query: 440 VNLLSRVGQDSQGYQN----------------------------SQNSFTKLLQLKPKHP 471
           V++LSR G   + ++                             ++++  +LL+ +    
Sbjct: 423 VDMLSRAGLLKEAFEFIGTMKIEPNPVIWRTLLGACRIHGELELAEHANQELLKARSDAS 482

Query: 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512
             +VLLSNIYA+ G W     +R LM    + K+ G + ++
Sbjct: 483 GDFVLLSNIYASVGEWLGSENMRKLMDDSGVNKEAGCAVVD 523


>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 534

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 166/523 (31%), Positives = 274/523 (52%), Gaps = 64/523 (12%)

Query: 30  TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF 89
            E + I  +    S  + ++IHA II+H L  SS + T+++        +DYA  +F+  
Sbjct: 9   VENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQV 68

Query: 90  TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-PNRLTYPFVSKSVASLSLLSLG 148
           +  N+ ++N +IR    NS +   I  +  +LR ++  P+R T+PF+ KS ASL    LG
Sbjct: 69  SNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLG 128

Query: 149 RGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208
           + +H  + K G  +       L DMY++      A KVFDE                   
Sbjct: 129 KQVHGHLYKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDE------------------- 169

Query: 209 CSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMI 268
                           M +++V SW SL+ G+ R G +KKA  LF  M +K +VSWTAMI
Sbjct: 170 ----------------MSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIVSWTAMI 213

Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328
           +G++  G   +A+  F +M  AG+  ++ +++S L +CA +G+LE G  +H Y       
Sbjct: 214 SGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAHLGSLELGKWIHMYAERRGLL 273

Query: 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388
            +  +  AL++MY+KCG +  A  +F +TK KD+++W+ MI G A HG   +A + F +M
Sbjct: 274 KQTGVCNALIEMYSKCGMLSQAIQLFEQTKGKDVISWSTMISGYAYHGNAHRAFETFIEM 333

Query: 389 MYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448
             +  +P+G  FL +L+AC + G  +  L +FD MR DY IEP ++H+  ++++L+R G+
Sbjct: 334 QRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGCLIDVLARAGK 393

Query: 449 DSQGYQNSQNSFTK----------------------------LLQLKPKHPSSYVLLSNI 480
             +  + ++    K                            L++++P    +YVLL+NI
Sbjct: 394 LERAVEITKTMPVKPDSKIWGSLLSSCRTKGNLDVALVAMDHLVEVEPDDMGNYVLLANI 453

Query: 481 YAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAG 523
           YA  G+W+DV+R+R ++++ ++KK PG S IEVN  V  F AG
Sbjct: 454 YADLGKWEDVSRLRKIIRKENMKKTPGCSLIEVNNIVQEFVAG 496


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.322    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,523,866,001
Number of Sequences: 23463169
Number of extensions: 380415109
Number of successful extensions: 1073249
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8413
Number of HSP's successfully gapped in prelim test: 2972
Number of HSP's that attempted gapping in prelim test: 904927
Number of HSP's gapped (non-prelim): 61098
length of query: 636
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 487
effective length of database: 8,863,183,186
effective search space: 4316370211582
effective search space used: 4316370211582
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 80 (35.4 bits)