BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006672
(636 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 202 WNVLINGCSKIGYLRKAVELFGM---MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258
W L N K G +KA+E + + N ++W +L + + ++GD +KA E +++ E
Sbjct: 12 WKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALE 71
Query: 259 ---KGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289
+W N + + G+ +KA+ + + L+
Sbjct: 72 LDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEK 279
M P + +W +L + + ++GD +KA E +++ E +W + N + + G+ +K
Sbjct: 2 AMDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQK 61
Query: 280 ALAMFFQMLD 289
A+ + + L+
Sbjct: 62 AIEYYQKALE 71
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 46/86 (53%), Gaps = 7/86 (8%)
Query: 212 IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMI 268
I Y +KA+EL ++ +W +L + + ++GD +A E +++ E + +W +
Sbjct: 21 IEYYQKALEL----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 269 NGFSQNGEAEKALAMFFQMLDAGVRA 294
N + + G+ ++A+ + + L+ R+
Sbjct: 77 NAYYKQGDYDEAIEYYQKALELDPRS 102
>pdb|3SN0|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Fumarate
pdb|3SN1|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Tartrate
pdb|3SN4|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium And Alpha- Ketoglutarate
Length = 409
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND--FTVVSALSACAKVGALEAG 315
++G+V W+ GF G + +++ A V ++ F L+ A G + G
Sbjct: 28 DEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVXEHERFFAEAYCLTRPATGGVVSEG 87
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+ GAI AL+D AK N+ L+ G+ +++ + W+
Sbjct: 88 I--------------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWS 124
>pdb|2OO6|A Chain A, Crystal Structure Of Putative L-Alanine-Dl-Glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
pdb|3GO2|A Chain A, Crystal Structure Of Putative L-alanine-dl-glutamate
Epimerase From Burkholderia Xenovorans Strain Lb400
Bound To Magnesium
Length = 409
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND--FTVVSALSACAKVGALEAG 315
++G+V W+ GF G + +++ A V ++ F L+ A G + G
Sbjct: 28 DEGIVGWSEFDEGFGSPGVTAVIEQLGKRLVGASVMEHERFFAEAYCLTRPATGGVVSEG 87
Query: 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWT 366
+ GAI AL+D AK N+ L+ G+ +++ + W+
Sbjct: 88 I--------------GAIENALLDAKAKTLNVPCYELLGGKLRDRVPVYWS 124
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEK 279
M P + +W +L + + ++GD +A E +++ E +W + N + + G+ ++
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 280 ALAMFFQMLD 289
A+ + + L+
Sbjct: 62 AIEYYQKALE 71
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEK 279
M P + +W +L + + ++GD +A E +++ E +W + N + + G+ ++
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 280 ALAMFFQMLD 289
A+ + + L+
Sbjct: 62 AIEYYQKALE 71
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 223 GMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEK 279
M P + +W +L + + ++GD +A E +++ E +W + N + + G+ ++
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDE 61
Query: 280 ALAMFFQMLD 289
A+ + + L+
Sbjct: 62 AIEYYQKALE 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,049,702
Number of Sequences: 62578
Number of extensions: 712766
Number of successful extensions: 1661
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1634
Number of HSP's gapped (non-prelim): 32
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)