Query 006672
Match_columns 636
No_of_seqs 762 out of 4624
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 12:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 7E-120 1E-124 1019.9 66.8 619 7-634 166-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 5E-113 1E-117 941.8 59.7 573 60-636 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.1E-71 4.6E-76 626.0 50.4 598 7-632 65-747 (857)
4 PLN03218 maturation of RBCL 1; 100.0 1.8E-64 3.9E-69 558.5 54.8 503 34-552 376-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.1E-61 2.4E-66 536.5 53.3 535 7-557 384-964 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 4.3E-62 9.2E-67 537.6 44.6 550 7-595 101-682 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.8E-28 1E-32 279.0 51.8 444 41-499 376-831 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 7.6E-28 1.7E-32 277.3 50.5 482 7-503 377-869 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 3E-32 6.6E-37 221.5 7.9 102 507-626 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 1.2E-20 2.6E-25 218.9 51.1 476 7-501 126-701 (1157)
11 KOG4626 O-linked N-acetylgluco 99.9 8E-22 1.7E-26 194.0 32.6 381 92-489 114-508 (966)
12 PRK11447 cellulose synthase su 99.9 1.1E-19 2.4E-24 210.9 50.5 443 45-504 252-745 (1157)
13 KOG4626 O-linked N-acetylgluco 99.9 2.5E-21 5.5E-26 190.5 30.6 452 32-501 19-486 (966)
14 PRK09782 bacteriophage N4 rece 99.9 1.8E-18 4E-23 191.9 48.0 226 262-501 478-707 (987)
15 TIGR00990 3a0801s09 mitochondr 99.9 1E-18 2.2E-23 190.5 43.0 389 97-500 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.9 7.9E-20 1.7E-24 189.1 31.0 302 171-508 42-355 (389)
17 PRK11788 tetratricopeptide rep 99.9 1.8E-19 3.9E-24 186.5 33.4 297 136-470 42-355 (389)
18 PRK09782 bacteriophage N4 rece 99.9 5E-17 1.1E-21 180.6 50.2 439 42-501 58-673 (987)
19 PRK10049 pgaA outer membrane p 99.8 4.1E-17 8.8E-22 181.2 44.5 404 62-500 14-456 (765)
20 PRK15174 Vi polysaccharide exp 99.8 4.1E-17 8.9E-22 177.4 39.1 347 74-460 16-379 (656)
21 PRK15174 Vi polysaccharide exp 99.8 1.6E-17 3.4E-22 180.6 34.7 319 171-501 49-382 (656)
22 TIGR00990 3a0801s09 mitochondr 99.8 1.8E-16 4E-21 172.9 42.8 243 212-461 307-570 (615)
23 PRK10049 pgaA outer membrane p 99.8 1.2E-16 2.6E-21 177.5 40.6 407 25-474 12-464 (765)
24 PRK14574 hmsH outer membrane p 99.8 7.3E-15 1.6E-19 160.2 47.0 417 72-501 43-514 (822)
25 KOG2002 TPR-containing nuclear 99.8 2.1E-15 4.6E-20 157.1 36.0 443 44-501 252-746 (1018)
26 PRK14574 hmsH outer membrane p 99.8 3.6E-14 7.8E-19 154.8 45.1 419 41-474 47-521 (822)
27 KOG2002 TPR-containing nuclear 99.7 2.6E-14 5.6E-19 149.1 37.2 407 91-505 267-714 (1018)
28 KOG4422 Uncharacterized conser 99.7 1.4E-13 3E-18 131.0 36.4 294 30-329 118-466 (625)
29 KOG0495 HAT repeat protein [RN 99.6 1.8E-11 3.9E-16 122.6 41.7 455 44-516 392-894 (913)
30 KOG2076 RNA polymerase III tra 99.6 3.3E-11 7.1E-16 125.6 44.6 492 34-532 145-763 (895)
31 KOG4422 Uncharacterized conser 99.6 4E-11 8.7E-16 114.4 33.9 391 93-502 115-553 (625)
32 KOG0495 HAT repeat protein [RN 99.6 1.7E-09 3.8E-14 108.8 46.9 359 139-510 416-790 (913)
33 PF13429 TPR_15: Tetratricopep 99.6 1.4E-14 3.1E-19 142.0 11.2 251 237-499 15-276 (280)
34 KOG0547 Translocase of outer m 99.6 2.3E-11 5E-16 118.1 31.7 380 97-499 118-565 (606)
35 KOG2076 RNA polymerase III tra 99.5 6E-12 1.3E-16 131.0 28.7 328 177-510 152-522 (895)
36 PRK10747 putative protoheme IX 99.5 7.1E-12 1.5E-16 128.7 29.2 281 177-497 97-387 (398)
37 KOG2003 TPR repeat-containing 99.5 4E-12 8.7E-17 121.8 24.7 429 44-485 217-708 (840)
38 KOG1915 Cell cycle control pro 99.5 3.5E-10 7.7E-15 109.5 37.3 443 44-497 89-622 (677)
39 TIGR00540 hemY_coli hemY prote 99.5 1.3E-11 2.9E-16 127.4 29.5 116 176-292 96-218 (409)
40 PF13429 TPR_15: Tetratricopep 99.5 2.6E-13 5.7E-18 133.0 13.0 250 170-423 14-274 (280)
41 TIGR00540 hemY_coli hemY prote 99.5 1E-10 2.2E-15 120.8 32.7 284 210-499 95-398 (409)
42 KOG1915 Cell cycle control pro 99.5 1.7E-09 3.7E-14 104.9 37.6 189 62-255 72-269 (677)
43 KOG1126 DNA-binding cell divis 99.5 8.2E-12 1.8E-16 126.1 22.6 273 214-501 334-621 (638)
44 COG2956 Predicted N-acetylgluc 99.5 6.6E-11 1.4E-15 109.2 26.3 278 235-521 74-368 (389)
45 KOG1155 Anaphase-promoting com 99.5 2.3E-10 5E-15 110.6 31.0 285 137-424 235-534 (559)
46 PRK10747 putative protoheme IX 99.5 7.2E-11 1.6E-15 121.3 29.3 275 107-390 97-389 (398)
47 KOG2003 TPR repeat-containing 99.4 3.3E-10 7.2E-15 108.9 29.3 426 62-500 200-689 (840)
48 KOG1155 Anaphase-promoting com 99.4 1.4E-09 3.1E-14 105.3 31.9 250 171-424 234-493 (559)
49 KOG1126 DNA-binding cell divis 99.4 3.6E-11 7.8E-16 121.6 21.7 278 179-470 334-624 (638)
50 KOG1173 Anaphase-promoting com 99.4 1.5E-09 3.2E-14 107.8 31.5 454 32-499 17-517 (611)
51 KOG4318 Bicoid mRNA stability 99.4 4.5E-09 9.8E-14 109.4 33.9 434 50-504 12-598 (1088)
52 KOG2047 mRNA splicing factor [ 99.4 3.4E-08 7.4E-13 99.5 38.8 261 231-499 388-686 (835)
53 COG2956 Predicted N-acetylgluc 99.3 2.4E-09 5.2E-14 99.1 27.1 286 177-469 48-354 (389)
54 COG3071 HemY Uncharacterized e 99.3 4.4E-09 9.5E-14 100.5 28.8 276 177-460 97-388 (400)
55 COG3071 HemY Uncharacterized e 99.3 5.1E-09 1.1E-13 100.1 28.2 283 100-389 88-388 (400)
56 KOG1173 Anaphase-promoting com 99.3 4.5E-09 9.8E-14 104.5 28.5 284 161-478 241-530 (611)
57 KOG1129 TPR repeat-containing 99.3 1.8E-09 3.8E-14 100.0 23.4 228 265-501 227-459 (478)
58 TIGR02521 type_IV_pilW type IV 99.3 1.5E-09 3.4E-14 103.2 24.3 163 331-499 65-231 (234)
59 PF13041 PPR_2: PPR repeat fam 99.2 1.2E-11 2.6E-16 85.2 5.2 50 92-141 1-50 (50)
60 KOG0547 Translocase of outer m 99.2 3.8E-08 8.2E-13 96.2 30.8 215 239-461 335-565 (606)
61 KOG1174 Anaphase-promoting com 99.2 5.9E-08 1.3E-12 92.9 31.2 392 64-472 98-506 (564)
62 PRK12370 invasion protein regu 99.2 2.8E-09 6.1E-14 114.5 25.7 244 245-501 276-536 (553)
63 KOG1840 Kinesin light chain [C 99.2 2.4E-09 5.2E-14 109.6 23.3 235 264-498 202-477 (508)
64 PRK11189 lipoprotein NlpI; Pro 99.2 2.2E-09 4.7E-14 105.6 21.5 219 274-501 39-266 (296)
65 PF13041 PPR_2: PPR repeat fam 99.2 4.6E-11 1E-15 82.3 6.6 50 259-308 1-50 (50)
66 TIGR02521 type_IV_pilW type IV 99.2 8.1E-09 1.7E-13 98.2 24.4 193 261-459 31-229 (234)
67 PRK12370 invasion protein regu 99.2 3.2E-09 6.9E-14 114.0 23.5 213 275-500 275-502 (553)
68 KOG2047 mRNA splicing factor [ 99.2 6.6E-07 1.4E-11 90.5 37.1 425 63-499 102-614 (835)
69 KOG4318 Bicoid mRNA stability 99.2 8.2E-09 1.8E-13 107.5 24.2 241 115-374 11-283 (1088)
70 KOG4162 Predicted calmodulin-b 99.2 1.1E-07 2.4E-12 98.2 31.6 423 58-501 318-784 (799)
71 KOG2376 Signal recognition par 99.1 1.1E-06 2.3E-11 88.3 34.3 422 44-493 28-513 (652)
72 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.7E-13 103.5 21.9 231 295-542 198-463 (508)
73 KOG1174 Anaphase-promoting com 99.1 8.6E-07 1.9E-11 85.1 31.0 264 227-501 229-501 (564)
74 KOG4340 Uncharacterized conser 99.0 6.7E-07 1.4E-11 82.2 28.0 307 97-422 13-335 (459)
75 KOG1129 TPR repeat-containing 99.0 1.5E-08 3.2E-13 93.9 17.3 223 234-461 227-457 (478)
76 PF12569 NARP1: NMDA receptor- 99.0 1.5E-06 3.2E-11 90.5 33.4 295 71-390 12-333 (517)
77 KOG1156 N-terminal acetyltrans 99.0 1E-05 2.2E-10 82.4 37.4 437 33-502 10-470 (700)
78 COG3063 PilF Tfp pilus assembl 99.0 4E-08 8.7E-13 87.2 17.5 164 333-502 37-204 (250)
79 KOG3785 Uncharacterized conser 99.0 2.9E-06 6.2E-11 79.9 29.5 383 101-503 29-493 (557)
80 KOG2376 Signal recognition par 99.0 1.8E-05 4E-10 79.8 36.7 407 68-500 17-487 (652)
81 KOG4162 Predicted calmodulin-b 99.0 1.1E-06 2.5E-11 90.9 29.1 418 33-472 328-789 (799)
82 KOG3616 Selective LIM binding 98.9 2.6E-06 5.7E-11 87.3 30.4 241 240-501 742-1025(1636)
83 COG3063 PilF Tfp pilus assembl 98.9 2.8E-07 6.1E-12 81.9 20.6 189 263-457 37-231 (250)
84 PRK11189 lipoprotein NlpI; Pro 98.9 4.2E-07 9.1E-12 89.4 24.0 198 262-470 65-269 (296)
85 KOG0548 Molecular co-chaperone 98.9 2E-06 4.3E-11 85.7 27.1 399 72-501 11-456 (539)
86 KOG3617 WD40 and TPR repeat-co 98.9 4.8E-06 1E-10 86.6 30.4 361 61-463 724-1175(1416)
87 KOG0985 Vesicle coat protein c 98.9 6.8E-06 1.5E-10 87.3 32.1 217 263-498 986-1247(1666)
88 PF04733 Coatomer_E: Coatomer 98.9 1.8E-07 3.8E-12 90.7 19.5 244 241-500 12-265 (290)
89 KOG3785 Uncharacterized conser 98.9 1.1E-05 2.4E-10 76.0 29.4 406 44-474 38-497 (557)
90 PRK04841 transcriptional regul 98.9 9.2E-05 2E-09 85.7 44.4 327 173-501 383-761 (903)
91 KOG3616 Selective LIM binding 98.9 5.5E-06 1.2E-10 85.0 29.3 284 169-495 620-932 (1636)
92 cd05804 StaR_like StaR_like; a 98.8 6.3E-06 1.4E-10 84.1 30.5 200 301-501 119-337 (355)
93 KOG0624 dsRNA-activated protei 98.8 6.5E-06 1.4E-10 77.3 26.7 302 169-501 43-371 (504)
94 KOG1156 N-terminal acetyltrans 98.8 8.6E-06 1.9E-10 83.0 28.0 69 430-502 366-436 (700)
95 PF12569 NARP1: NMDA receptor- 98.8 2.8E-06 6E-11 88.5 24.9 127 298-425 196-333 (517)
96 cd05804 StaR_like StaR_like; a 98.8 1.2E-05 2.6E-10 82.0 29.8 203 263-467 116-341 (355)
97 PF04733 Coatomer_E: Coatomer 98.8 8.5E-07 1.8E-11 86.0 19.5 214 167-390 38-264 (290)
98 PRK04841 transcriptional regul 98.7 2.5E-05 5.4E-10 90.4 34.0 323 141-463 386-761 (903)
99 KOG1127 TPR repeat-containing 98.7 9.2E-06 2E-10 86.5 25.4 446 46-497 474-993 (1238)
100 KOG1914 mRNA cleavage and poly 98.7 0.00035 7.5E-09 70.1 33.8 423 60-490 17-529 (656)
101 KOG0985 Vesicle coat protein c 98.6 0.00036 7.7E-09 74.8 35.2 270 173-484 1057-1326(1666)
102 PRK10370 formate-dependent nit 98.6 3.9E-06 8.4E-11 76.8 17.8 147 338-501 23-174 (198)
103 PRK15359 type III secretion sy 98.6 2E-06 4.2E-11 74.5 14.7 122 353-482 15-137 (144)
104 TIGR03302 OM_YfiO outer membra 98.6 4.1E-06 9E-11 79.8 17.8 182 296-500 33-232 (235)
105 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.5E-12 58.6 4.2 32 159-190 2-33 (34)
106 PF12854 PPR_1: PPR repeat 98.5 1.2E-07 2.6E-12 58.5 4.2 34 193-226 1-34 (34)
107 PRK15359 type III secretion sy 98.5 4.7E-06 1E-10 72.1 15.5 109 382-501 13-122 (144)
108 KOG3617 WD40 and TPR repeat-co 98.5 0.00021 4.6E-09 74.8 29.4 237 91-358 723-994 (1416)
109 KOG1125 TPR repeat-containing 98.5 1.2E-05 2.5E-10 81.1 19.0 213 240-459 295-524 (579)
110 KOG1128 Uncharacterized conser 98.5 2.4E-05 5.3E-10 80.9 21.2 211 232-460 400-614 (777)
111 KOG1070 rRNA processing protei 98.5 1.6E-05 3.4E-10 87.6 20.9 200 196-396 1455-1668(1710)
112 KOG1125 TPR repeat-containing 98.5 7.1E-06 1.5E-10 82.6 16.9 223 268-499 292-526 (579)
113 PLN02789 farnesyltranstransfer 98.5 8.6E-05 1.9E-09 73.1 24.4 212 263-484 39-268 (320)
114 KOG1128 Uncharacterized conser 98.5 6.7E-06 1.4E-10 84.9 16.5 214 265-501 402-617 (777)
115 KOG1127 TPR repeat-containing 98.5 0.00017 3.6E-09 77.3 26.9 443 43-494 507-1030(1238)
116 KOG1070 rRNA processing protei 98.4 2.9E-05 6.3E-10 85.6 20.9 202 295-504 1457-1667(1710)
117 KOG4340 Uncharacterized conser 98.4 0.00013 2.8E-09 67.6 21.8 95 263-359 243-338 (459)
118 PRK15179 Vi polysaccharide bio 98.4 3.7E-05 8E-10 83.4 21.5 133 326-462 81-217 (694)
119 KOG0548 Molecular co-chaperone 98.4 0.00013 2.8E-09 73.2 22.7 361 102-500 10-421 (539)
120 KOG0624 dsRNA-activated protei 98.4 0.00017 3.6E-09 68.1 21.8 294 68-390 43-369 (504)
121 PRK14720 transcript cleavage f 98.4 8.3E-05 1.8E-09 81.5 23.0 235 198-482 30-268 (906)
122 KOG1914 mRNA cleavage and poly 98.3 0.0053 1.1E-07 62.0 34.7 400 91-500 17-501 (656)
123 PLN02789 farnesyltranstransfer 98.3 0.00015 3.3E-09 71.4 21.8 183 308-499 49-249 (320)
124 TIGR03302 OM_YfiO outer membra 98.3 6.3E-05 1.4E-09 71.6 18.5 182 259-460 31-230 (235)
125 COG5010 TadD Flp pilus assembl 98.3 0.00014 3E-09 66.6 18.8 160 293-457 63-226 (257)
126 PRK10370 formate-dependent nit 98.2 8.9E-05 1.9E-09 67.9 17.3 113 276-390 54-172 (198)
127 KOG3081 Vesicle coat complex C 98.2 0.00065 1.4E-08 62.3 21.9 222 263-499 43-270 (299)
128 COG4783 Putative Zn-dependent 98.2 0.00017 3.8E-09 71.6 19.8 137 340-501 315-455 (484)
129 TIGR02552 LcrH_SycD type III s 98.2 2.4E-05 5.3E-10 67.1 12.4 110 384-501 5-115 (135)
130 COG5010 TadD Flp pilus assembl 98.2 0.00018 4E-09 65.8 17.7 156 330-495 66-226 (257)
131 PRK15363 pathogenicity island 98.2 7.9E-05 1.7E-09 63.5 14.2 117 399-543 37-154 (157)
132 TIGR00756 PPR pentatricopeptid 98.1 3.9E-06 8.4E-11 52.6 4.3 35 95-129 1-35 (35)
133 COG4783 Putative Zn-dependent 98.1 0.0015 3.3E-08 65.1 23.0 195 77-290 251-454 (484)
134 TIGR00756 PPR pentatricopeptid 98.1 6.9E-06 1.5E-10 51.4 4.5 34 262-295 1-34 (35)
135 KOG3081 Vesicle coat complex C 98.1 0.0027 5.9E-08 58.3 22.5 174 285-470 97-275 (299)
136 PRK14720 transcript cleavage f 98.0 0.00072 1.6E-08 74.4 21.8 59 263-323 118-176 (906)
137 PF13812 PPR_3: Pentatricopept 98.0 8.5E-06 1.8E-10 50.6 4.1 34 94-127 1-34 (34)
138 PRK15179 Vi polysaccharide bio 98.0 0.00032 7E-09 76.2 18.6 166 270-440 58-229 (694)
139 KOG0553 TPR repeat-containing 98.0 7.4E-05 1.6E-09 69.7 11.6 110 370-488 89-200 (304)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00015 3.2E-09 72.9 14.6 123 366-498 173-295 (395)
141 KOG3060 Uncharacterized conser 98.0 0.0059 1.3E-07 55.7 22.6 193 274-475 25-229 (289)
142 PF13812 PPR_3: Pentatricopept 98.0 1.5E-05 3.2E-10 49.5 4.4 34 261-294 1-34 (34)
143 TIGR02552 LcrH_SycD type III s 97.9 0.00022 4.9E-09 61.1 12.9 88 302-390 23-113 (135)
144 PF12895 Apc3: Anaphase-promot 97.9 2.1E-05 4.5E-10 61.0 5.6 82 410-496 2-83 (84)
145 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00046 1E-08 69.4 15.4 122 235-358 174-295 (395)
146 PF09976 TPR_21: Tetratricopep 97.8 0.00088 1.9E-08 58.1 14.1 124 365-497 15-144 (145)
147 PF09976 TPR_21: Tetratricopep 97.8 0.00081 1.8E-08 58.3 13.6 113 344-459 24-144 (145)
148 PF01535 PPR: PPR repeat; Int 97.7 5.3E-05 1.1E-09 45.8 3.6 31 262-292 1-31 (31)
149 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 1E-09 46.0 3.3 31 95-125 1-31 (31)
150 cd00189 TPR Tetratricopeptide 97.7 0.00063 1.4E-08 53.5 10.8 92 402-499 5-96 (100)
151 PF13414 TPR_11: TPR repeat; P 97.7 0.00014 3E-09 53.9 6.3 64 432-499 2-66 (69)
152 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0017 3.7E-08 54.0 13.5 94 365-460 5-103 (119)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0011 2.4E-08 55.1 12.3 100 398-501 3-106 (119)
154 PLN03088 SGT1, suppressor of 97.6 0.0015 3.3E-08 65.9 14.3 106 369-483 9-116 (356)
155 CHL00033 ycf3 photosystem I as 97.6 0.0024 5.3E-08 57.0 14.1 105 362-469 35-152 (168)
156 KOG2053 Mitochondrial inherita 97.6 0.18 4E-06 54.5 39.7 209 44-258 25-254 (932)
157 KOG3060 Uncharacterized conser 97.6 0.016 3.5E-07 53.0 18.7 185 311-502 27-222 (289)
158 PF13432 TPR_16: Tetratricopep 97.5 0.0003 6.5E-09 51.3 6.3 58 439-500 3-60 (65)
159 PF14938 SNAP: Soluble NSF att 97.5 0.032 6.9E-07 54.5 22.1 101 262-362 156-268 (282)
160 PRK02603 photosystem I assembl 97.5 0.0022 4.8E-08 57.5 12.9 97 399-499 37-148 (172)
161 PLN03088 SGT1, suppressor of 97.5 0.0012 2.5E-08 66.8 12.2 91 404-501 9-100 (356)
162 cd00189 TPR Tetratricopeptide 97.4 0.0021 4.5E-08 50.4 10.8 92 365-460 3-95 (100)
163 KOG0553 TPR repeat-containing 97.4 0.00074 1.6E-08 63.2 8.9 88 406-500 90-178 (304)
164 PRK10153 DNA-binding transcrip 97.4 0.0066 1.4E-07 64.1 17.0 136 360-502 335-484 (517)
165 KOG2053 Mitochondrial inherita 97.4 0.066 1.4E-06 57.7 23.8 123 242-367 21-150 (932)
166 KOG0550 Molecular chaperone (D 97.4 0.0049 1.1E-07 60.2 14.2 90 408-501 260-351 (486)
167 PRK15363 pathogenicity island 97.4 0.0047 1E-07 52.8 12.4 88 336-425 40-131 (157)
168 PRK02603 photosystem I assembl 97.4 0.0067 1.4E-07 54.4 14.2 117 364-486 37-166 (172)
169 COG4700 Uncharacterized protei 97.4 0.067 1.5E-06 46.6 19.0 135 293-463 86-223 (251)
170 CHL00033 ycf3 photosystem I as 97.3 0.0032 6.9E-08 56.2 11.7 116 378-497 15-139 (168)
171 PF12895 Apc3: Anaphase-promot 97.3 0.00075 1.6E-08 52.2 6.1 80 375-458 2-83 (84)
172 KOG2796 Uncharacterized conser 97.2 0.034 7.3E-07 51.1 16.7 134 263-398 179-320 (366)
173 PF10037 MRP-S27: Mitochondria 97.2 0.0028 6E-08 64.2 11.0 57 134-190 108-164 (429)
174 PF10037 MRP-S27: Mitochondria 97.2 0.004 8.7E-08 63.0 11.9 120 58-177 61-186 (429)
175 KOG1130 Predicted G-alpha GTPa 97.1 0.0022 4.9E-08 62.2 9.0 136 364-499 197-343 (639)
176 PF13424 TPR_12: Tetratricopep 97.1 0.0017 3.8E-08 49.3 6.9 67 433-499 5-74 (78)
177 PF13431 TPR_17: Tetratricopep 97.1 0.00034 7.4E-09 43.0 2.3 31 461-491 3-33 (34)
178 PF14938 SNAP: Soluble NSF att 97.1 0.038 8.2E-07 54.0 17.8 98 403-500 120-225 (282)
179 PF12688 TPR_5: Tetratrico pep 97.1 0.015 3.2E-07 48.0 12.5 107 266-372 6-116 (120)
180 PF08579 RPM2: Mitochondrial r 97.1 0.0045 9.8E-08 49.1 8.8 80 96-175 27-115 (120)
181 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.36 7.9E-06 48.1 29.6 132 362-499 397-530 (660)
182 PF05843 Suf: Suppressor of fo 97.1 0.011 2.5E-07 57.4 13.5 126 263-390 3-135 (280)
183 PF14559 TPR_19: Tetratricopep 97.1 0.001 2.2E-08 48.9 4.8 51 445-499 3-53 (68)
184 PRK10153 DNA-binding transcrip 97.1 0.026 5.7E-07 59.7 16.9 88 379-473 401-489 (517)
185 PF05843 Suf: Suppressor of fo 97.1 0.011 2.4E-07 57.6 13.1 127 297-425 2-135 (280)
186 PF13371 TPR_9: Tetratricopept 97.0 0.002 4.3E-08 48.2 6.2 57 441-501 3-59 (73)
187 PRK15331 chaperone protein Sic 97.0 0.048 1E-06 47.0 15.1 90 404-499 44-133 (165)
188 PF08579 RPM2: Mitochondrial r 97.0 0.0077 1.7E-07 47.8 9.4 82 262-343 26-116 (120)
189 PF07079 DUF1347: Protein of u 97.0 0.43 9.3E-06 47.8 29.9 118 372-497 389-521 (549)
190 COG4235 Cytochrome c biogenesi 97.0 0.011 2.3E-07 55.9 11.9 105 396-506 155-262 (287)
191 COG4700 Uncharacterized protei 97.0 0.12 2.6E-06 45.1 17.0 133 360-497 87-219 (251)
192 PF12688 TPR_5: Tetratrico pep 97.0 0.046 1E-06 45.1 14.1 93 368-460 7-102 (120)
193 KOG2041 WD40 repeat protein [G 97.0 0.65 1.4E-05 48.9 25.9 251 79-359 679-951 (1189)
194 PF07079 DUF1347: Protein of u 96.9 0.51 1.1E-05 47.3 30.4 135 73-211 16-179 (549)
195 PF13432 TPR_16: Tetratricopep 96.9 0.0037 8E-08 45.4 6.7 61 404-470 4-64 (65)
196 PF06239 ECSIT: Evolutionarily 96.9 0.033 7.2E-07 50.1 13.4 115 293-424 44-166 (228)
197 COG3898 Uncharacterized membra 96.9 0.45 9.7E-06 46.7 21.8 283 212-508 97-398 (531)
198 PRK10866 outer membrane biogen 96.9 0.084 1.8E-06 50.1 17.0 55 369-423 182-238 (243)
199 PF14559 TPR_19: Tetratricopep 96.8 0.0031 6.7E-08 46.3 5.8 46 410-457 4-49 (68)
200 KOG2796 Uncharacterized conser 96.8 0.04 8.6E-07 50.7 13.5 134 364-501 179-316 (366)
201 KOG2280 Vacuolar assembly/sort 96.8 0.85 1.9E-05 48.6 24.5 108 334-457 687-794 (829)
202 PF06239 ECSIT: Evolutionarily 96.8 0.029 6.4E-07 50.5 12.0 97 352-449 35-154 (228)
203 PF13414 TPR_11: TPR repeat; P 96.7 0.0067 1.5E-07 44.7 7.0 61 362-424 3-65 (69)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.7 0.0066 1.4E-07 61.0 8.4 59 398-459 76-138 (453)
205 PRK10803 tol-pal system protei 96.7 0.032 7E-07 53.3 12.8 94 365-460 146-244 (263)
206 KOG1538 Uncharacterized conser 96.6 0.2 4.4E-06 52.0 18.0 55 296-359 747-801 (1081)
207 KOG0550 Molecular chaperone (D 96.6 0.9 1.9E-05 45.0 22.3 151 238-390 177-349 (486)
208 PRK10866 outer membrane biogen 96.6 0.27 5.8E-06 46.7 18.1 55 267-321 181-237 (243)
209 PRK10803 tol-pal system protei 96.5 0.047 1E-06 52.3 12.5 103 398-501 144-247 (263)
210 PF04840 Vps16_C: Vps16, C-ter 96.4 1.1 2.4E-05 44.3 29.1 106 335-457 181-286 (319)
211 PF13428 TPR_14: Tetratricopep 96.4 0.006 1.3E-07 40.2 4.2 42 434-479 2-43 (44)
212 PF04840 Vps16_C: Vps16, C-ter 96.3 1.2 2.6E-05 44.0 29.5 104 366-493 181-284 (319)
213 KOG1130 Predicted G-alpha GTPa 96.3 0.047 1E-06 53.4 11.3 137 333-469 197-351 (639)
214 KOG1538 Uncharacterized conser 96.3 0.055 1.2E-06 56.0 12.2 61 19-88 623-683 (1081)
215 KOG2041 WD40 repeat protein [G 96.3 2 4.3E-05 45.5 26.2 182 60-260 689-908 (1189)
216 COG3898 Uncharacterized membra 96.1 1.5 3.3E-05 43.1 26.5 290 97-425 85-391 (531)
217 PF13424 TPR_12: Tetratricopep 96.0 0.025 5.5E-07 42.7 6.7 62 399-460 7-73 (78)
218 KOG4555 TPR repeat-containing 96.0 0.064 1.4E-06 43.7 8.8 92 406-502 52-146 (175)
219 PF03704 BTAD: Bacterial trans 96.0 0.15 3.2E-06 44.2 12.0 67 435-505 64-135 (146)
220 PF13525 YfiO: Outer membrane 95.9 1.4 3E-05 40.6 18.7 59 267-325 11-71 (203)
221 PF12921 ATP13: Mitochondrial 95.9 0.1 2.2E-06 43.5 9.9 53 391-443 46-98 (126)
222 KOG4555 TPR repeat-containing 95.8 0.29 6.2E-06 40.1 11.7 96 371-468 52-158 (175)
223 COG4235 Cytochrome c biogenesi 95.8 0.27 5.9E-06 46.7 13.6 96 328-425 153-255 (287)
224 PF13371 TPR_9: Tetratricopept 95.8 0.047 1E-06 40.6 7.1 63 405-473 3-65 (73)
225 KOG1941 Acetylcholine receptor 95.6 2 4.4E-05 41.8 18.2 163 262-424 84-273 (518)
226 PF13525 YfiO: Outer membrane 95.5 0.47 1E-05 43.7 13.9 55 236-290 11-71 (203)
227 PF13281 DUF4071: Domain of un 95.4 1.6 3.6E-05 43.6 18.1 161 336-500 146-334 (374)
228 COG3118 Thioredoxin domain-con 95.4 0.72 1.6E-05 43.8 14.6 144 349-501 121-266 (304)
229 COG0457 NrfG FOG: TPR repeat [ 95.2 2.5 5.5E-05 39.0 24.2 196 297-500 60-265 (291)
230 PRK11906 transcriptional regul 95.2 0.81 1.8E-05 46.5 15.2 133 363-501 252-402 (458)
231 PF03704 BTAD: Bacterial trans 95.1 0.2 4.2E-06 43.4 9.6 70 364-435 64-138 (146)
232 smart00299 CLH Clathrin heavy 95.0 2 4.3E-05 36.7 15.8 125 133-272 11-136 (140)
233 KOG0543 FKBP-type peptidyl-pro 94.9 0.47 1E-05 47.0 12.3 106 369-500 215-320 (397)
234 COG1729 Uncharacterized protei 94.8 0.48 1E-05 44.5 11.7 102 364-472 144-250 (262)
235 PF08631 SPO22: Meiosis protei 94.7 4.6 0.0001 39.3 23.9 132 264-396 39-191 (278)
236 PF13512 TPR_18: Tetratricopep 94.6 1 2.2E-05 38.1 12.1 62 406-471 19-81 (142)
237 PF13281 DUF4071: Domain of un 94.6 2.4 5.3E-05 42.4 16.6 70 237-306 148-227 (374)
238 PLN03098 LPA1 LOW PSII ACCUMUL 94.4 0.17 3.7E-06 51.2 8.2 64 328-391 72-141 (453)
239 PRK11906 transcriptional regul 94.4 2 4.3E-05 43.8 15.6 109 377-495 319-431 (458)
240 PRK09687 putative lyase; Provi 94.4 5.4 0.00012 38.8 25.3 236 60-306 34-277 (280)
241 KOG2114 Vacuolar assembly/sort 94.3 9.7 0.00021 41.6 28.6 181 65-260 336-520 (933)
242 KOG3941 Intermediate in Toll s 94.3 0.34 7.4E-06 45.3 9.3 100 350-450 53-175 (406)
243 KOG1941 Acetylcholine receptor 94.3 2.3 4.9E-05 41.5 14.9 125 336-460 127-273 (518)
244 KOG1920 IkappaB kinase complex 94.3 12 0.00027 42.5 24.0 161 178-361 894-1056(1265)
245 KOG2610 Uncharacterized conser 94.2 0.91 2E-05 43.6 12.1 118 106-226 115-236 (491)
246 PF04053 Coatomer_WDAD: Coatom 94.2 2.6 5.6E-05 43.8 16.6 130 201-355 297-426 (443)
247 KOG0543 FKBP-type peptidyl-pro 94.2 0.7 1.5E-05 45.8 11.7 141 337-500 214-355 (397)
248 KOG2280 Vacuolar assembly/sort 94.1 10 0.00022 41.0 26.1 108 364-494 686-793 (829)
249 PF12921 ATP13: Mitochondrial 93.9 0.66 1.4E-05 38.7 9.7 49 291-339 47-96 (126)
250 KOG1258 mRNA processing protei 93.8 10 0.00022 39.9 25.6 182 296-485 297-489 (577)
251 COG1729 Uncharacterized protei 93.7 0.93 2E-05 42.6 11.1 101 399-501 144-245 (262)
252 PF04053 Coatomer_WDAD: Coatom 93.6 7.4 0.00016 40.5 18.7 129 167-320 298-426 (443)
253 KOG2610 Uncharacterized conser 93.5 1.1 2.3E-05 43.2 11.1 161 343-507 115-283 (491)
254 smart00299 CLH Clathrin heavy 93.5 4.3 9.3E-05 34.6 15.0 39 68-106 12-53 (140)
255 KOG3941 Intermediate in Toll s 93.5 0.37 7.9E-06 45.1 7.8 116 81-215 52-174 (406)
256 PRK15331 chaperone protein Sic 93.3 0.88 1.9E-05 39.4 9.5 87 269-357 45-131 (165)
257 PF13176 TPR_7: Tetratricopept 93.2 0.17 3.8E-06 31.4 3.9 26 473-498 1-26 (36)
258 PF10300 DUF3808: Protein of u 92.8 3.6 7.7E-05 43.4 15.3 119 375-499 246-375 (468)
259 COG4785 NlpI Lipoprotein NlpI, 92.8 3.6 7.8E-05 37.2 12.6 163 328-501 96-267 (297)
260 PF10300 DUF3808: Protein of u 92.7 7 0.00015 41.2 17.3 12 76-87 9-20 (468)
261 KOG2114 Vacuolar assembly/sort 92.6 19 0.0004 39.6 20.0 175 234-423 338-516 (933)
262 PF04184 ST7: ST7 protein; In 92.4 15 0.00032 38.0 18.5 59 366-424 263-322 (539)
263 KOG1258 mRNA processing protei 92.3 17 0.00036 38.4 29.1 184 261-449 297-491 (577)
264 KOG1920 IkappaB kinase complex 92.2 8.9 0.00019 43.6 17.4 21 269-289 859-879 (1265)
265 PF07719 TPR_2: Tetratricopept 92.1 0.33 7.1E-06 29.4 4.1 22 436-457 4-25 (34)
266 PF09205 DUF1955: Domain of un 92.0 6.3 0.00014 32.7 12.7 67 433-503 86-152 (161)
267 PF00515 TPR_1: Tetratricopept 91.9 0.26 5.7E-06 29.9 3.5 23 435-457 3-25 (34)
268 COG3629 DnrI DNA-binding trans 91.8 0.81 1.8E-05 43.7 8.1 62 434-499 154-215 (280)
269 COG4105 ComL DNA uptake lipopr 91.8 11 0.00025 35.2 18.0 156 342-499 45-232 (254)
270 PF13428 TPR_14: Tetratricopep 91.8 0.26 5.6E-06 32.3 3.5 39 166-205 3-41 (44)
271 COG4105 ComL DNA uptake lipopr 91.5 12 0.00026 35.1 16.7 51 370-422 175-229 (254)
272 COG3118 Thioredoxin domain-con 91.2 15 0.00032 35.3 19.2 141 306-451 144-290 (304)
273 COG0457 NrfG FOG: TPR repeat [ 91.1 12 0.00026 34.3 23.8 186 310-501 37-232 (291)
274 PF02259 FAT: FAT domain; Int 90.9 19 0.00042 36.2 20.7 61 330-390 145-212 (352)
275 KOG1585 Protein required for f 90.8 9.8 0.00021 35.3 13.3 24 166-189 93-116 (308)
276 PF09205 DUF1955: Domain of un 90.7 8.8 0.00019 31.9 13.8 60 402-463 91-150 (161)
277 PF13512 TPR_18: Tetratricopep 90.6 3.8 8.2E-05 34.7 10.0 68 341-410 20-95 (142)
278 COG2909 MalT ATP-dependent tra 90.5 32 0.0007 38.2 23.7 159 343-504 470-651 (894)
279 PRK09687 putative lyase; Provi 90.4 18 0.00039 35.1 27.1 198 198-407 67-277 (280)
280 KOG4234 TPR repeat-containing 90.3 2.2 4.7E-05 38.0 8.6 89 407-501 105-198 (271)
281 PF00637 Clathrin: Region in C 90.2 0.5 1.1E-05 40.6 4.9 129 135-277 13-141 (143)
282 KOG4648 Uncharacterized conser 90.2 1.8 3.8E-05 41.9 8.5 92 370-472 105-200 (536)
283 PF13170 DUF4003: Protein of u 90.1 8.4 0.00018 37.7 13.6 82 379-461 160-245 (297)
284 TIGR02508 type_III_yscG type I 90.1 4.8 0.0001 31.4 9.2 60 238-300 47-106 (115)
285 KOG1585 Protein required for f 90.0 13 0.00028 34.6 13.4 63 434-496 151-215 (308)
286 KOG2066 Vacuolar assembly/sort 89.9 34 0.00073 37.4 23.5 48 166-217 394-441 (846)
287 PF13176 TPR_7: Tetratricopept 89.6 0.79 1.7E-05 28.4 4.1 26 263-288 1-26 (36)
288 PF00515 TPR_1: Tetratricopept 89.5 0.7 1.5E-05 28.0 3.8 31 364-396 3-33 (34)
289 KOG2066 Vacuolar assembly/sort 89.4 37 0.0008 37.1 23.5 170 171-362 363-536 (846)
290 PF13374 TPR_10: Tetratricopep 89.3 0.84 1.8E-05 29.1 4.3 28 435-462 4-31 (42)
291 PF07035 Mic1: Colon cancer-as 89.1 15 0.00032 32.3 13.0 52 236-287 95-146 (167)
292 PF07719 TPR_2: Tetratricopept 89.1 0.8 1.7E-05 27.6 3.8 29 472-500 2-30 (34)
293 PF07035 Mic1: Colon cancer-as 89.0 15 0.00033 32.2 14.1 57 264-324 92-148 (167)
294 COG4785 NlpI Lipoprotein NlpI, 88.8 8.4 0.00018 35.0 11.1 176 146-326 82-267 (297)
295 COG3629 DnrI DNA-binding trans 88.7 2.6 5.7E-05 40.3 8.7 75 331-405 153-235 (280)
296 PF10602 RPN7: 26S proteasome 88.7 7.4 0.00016 34.8 11.2 96 399-495 38-137 (177)
297 COG5107 RNA14 Pre-mRNA 3'-end 88.2 32 0.0007 35.0 28.7 400 44-461 25-530 (660)
298 PF09613 HrpB1_HrpK: Bacterial 88.1 7.5 0.00016 33.7 10.2 108 73-185 20-130 (160)
299 COG4649 Uncharacterized protei 88.0 14 0.00031 32.3 11.6 49 242-290 70-123 (221)
300 KOG4570 Uncharacterized conser 87.5 2.2 4.7E-05 40.8 7.1 102 57-159 58-165 (418)
301 PF13374 TPR_10: Tetratricopep 87.3 1.1 2.3E-05 28.5 3.9 28 472-499 3-30 (42)
302 PF02259 FAT: FAT domain; Int 87.2 35 0.00076 34.3 17.3 74 430-503 143-216 (352)
303 PF10345 Cohesin_load: Cohesin 87.0 53 0.0011 36.2 31.7 181 45-226 38-252 (608)
304 KOG4570 Uncharacterized conser 87.0 5.1 0.00011 38.4 9.2 97 325-425 58-163 (418)
305 KOG1464 COP9 signalosome, subu 86.9 28 0.0006 32.8 13.6 203 244-447 41-286 (440)
306 PF10602 RPN7: 26S proteasome 86.3 6.2 0.00013 35.3 9.3 61 364-424 38-100 (177)
307 PF13181 TPR_8: Tetratricopept 86.0 1.2 2.6E-05 26.9 3.3 24 474-497 4-27 (34)
308 KOG1586 Protein required for f 86.0 29 0.00062 32.1 13.6 67 435-502 115-185 (288)
309 PF07721 TPR_4: Tetratricopept 85.9 1.1 2.4E-05 25.3 2.9 23 473-495 3-25 (26)
310 PF04097 Nic96: Nup93/Nic96; 85.8 41 0.00089 37.0 17.1 71 93-165 111-188 (613)
311 PF13170 DUF4003: Protein of u 85.8 32 0.0007 33.7 14.6 127 378-506 78-217 (297)
312 PF06552 TOM20_plant: Plant sp 85.7 5.1 0.00011 35.3 8.0 44 443-486 38-84 (186)
313 PF02284 COX5A: Cytochrome c o 85.5 7 0.00015 30.7 7.7 61 379-441 27-87 (108)
314 COG4649 Uncharacterized protei 85.3 25 0.00055 30.8 13.9 119 309-427 71-197 (221)
315 TIGR02561 HrpB1_HrpK type III 85.3 5.5 0.00012 33.9 7.7 52 446-501 23-74 (153)
316 PF09613 HrpB1_HrpK: Bacterial 85.1 25 0.00053 30.6 12.5 19 341-359 54-72 (160)
317 PF08631 SPO22: Meiosis protei 84.4 41 0.0009 32.6 24.0 222 273-498 5-273 (278)
318 cd00923 Cyt_c_Oxidase_Va Cytoc 84.0 8.6 0.00019 29.9 7.5 63 377-441 22-84 (103)
319 PF13181 TPR_8: Tetratricopept 84.0 2.4 5.2E-05 25.5 4.0 27 434-460 2-28 (34)
320 KOG1550 Extracellular protein 83.6 71 0.0015 34.7 19.0 143 246-392 228-394 (552)
321 PF06552 TOM20_plant: Plant sp 83.3 15 0.00032 32.5 9.8 62 378-444 51-124 (186)
322 TIGR02508 type_III_yscG type I 83.2 12 0.00025 29.4 8.0 30 173-206 48-77 (115)
323 PF13431 TPR_17: Tetratricopep 83.1 1.7 3.7E-05 26.5 3.0 24 328-351 10-33 (34)
324 KOG4234 TPR repeat-containing 83.1 14 0.0003 33.2 9.5 94 370-471 103-202 (271)
325 KOG0276 Vesicle coat complex C 82.8 17 0.00037 38.3 11.5 125 176-326 598-722 (794)
326 TIGR02561 HrpB1_HrpK type III 82.7 28 0.00062 29.7 10.9 64 309-373 23-87 (153)
327 KOG2396 HAT (Half-A-TPR) repea 81.6 71 0.0015 33.2 26.6 370 112-499 89-558 (568)
328 COG2976 Uncharacterized protei 81.1 41 0.00089 30.2 12.9 89 404-501 96-189 (207)
329 PF04184 ST7: ST7 protein; In 80.5 78 0.0017 33.0 18.5 61 298-358 261-322 (539)
330 PF13174 TPR_6: Tetratricopept 80.5 2.5 5.3E-05 25.1 3.1 28 473-500 2-29 (33)
331 PF10579 Rapsyn_N: Rapsyn N-te 80.4 8.9 0.00019 28.6 6.3 49 409-457 18-67 (80)
332 PF13762 MNE1: Mitochondrial s 80.1 26 0.00057 29.9 9.9 78 64-141 40-127 (145)
333 KOG2396 HAT (Half-A-TPR) repea 78.9 28 0.00061 36.0 11.3 91 381-477 90-180 (568)
334 KOG1586 Protein required for f 78.9 38 0.00082 31.4 11.0 17 271-287 24-40 (288)
335 PF11207 DUF2989: Protein of u 78.5 8.9 0.00019 34.6 7.0 69 181-250 123-198 (203)
336 PF11207 DUF2989: Protein of u 78.1 17 0.00036 32.9 8.6 73 278-351 123-198 (203)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 77.0 16 0.00035 28.5 6.9 59 112-171 25-83 (103)
338 PF00637 Clathrin: Region in C 76.3 1.4 3E-05 37.8 1.4 82 303-387 14-95 (143)
339 PF14561 TPR_20: Tetratricopep 75.4 9.3 0.0002 29.6 5.6 41 461-501 12-52 (90)
340 PRK15180 Vi polysaccharide bio 74.8 1.1E+02 0.0024 31.6 23.1 115 42-160 303-422 (831)
341 PF12862 Apc5: Anaphase-promot 74.7 13 0.00029 29.0 6.5 55 445-499 10-69 (94)
342 PF02284 COX5A: Cytochrome c o 74.3 16 0.00035 28.8 6.5 60 112-172 28-87 (108)
343 TIGR02270 conserved hypothetic 74.3 1.1E+02 0.0024 31.6 24.7 191 218-424 88-279 (410)
344 PF09986 DUF2225: Uncharacteri 73.6 32 0.0007 31.8 9.7 67 434-502 119-196 (214)
345 PF04097 Nic96: Nup93/Nic96; 73.5 1.4E+02 0.0031 32.8 16.2 84 338-424 265-354 (613)
346 KOG1464 COP9 signalosome, subu 73.4 85 0.0018 29.7 16.0 189 273-461 39-259 (440)
347 KOG0890 Protein kinase of the 73.2 2.6E+02 0.0057 35.4 23.4 64 433-502 1670-1733(2382)
348 PF04190 DUF410: Protein of un 73.0 91 0.002 29.9 19.1 82 329-425 88-169 (260)
349 PF07721 TPR_4: Tetratricopept 72.9 6.9 0.00015 22.0 3.3 20 169-188 6-25 (26)
350 COG3947 Response regulator con 72.8 15 0.00032 35.1 7.1 59 437-499 283-341 (361)
351 PRK15180 Vi polysaccharide bio 71.6 42 0.0009 34.5 10.3 141 374-524 301-442 (831)
352 COG2976 Uncharacterized protei 71.1 80 0.0017 28.5 14.7 88 305-392 98-189 (207)
353 smart00028 TPR Tetratricopepti 70.8 8.1 0.00017 21.8 3.6 27 473-499 3-29 (34)
354 KOG1550 Extracellular protein 70.8 1.6E+02 0.0035 31.9 16.4 141 145-291 228-394 (552)
355 PF09477 Type_III_YscG: Bacter 70.0 54 0.0012 26.2 8.4 78 311-391 21-98 (116)
356 COG1747 Uncharacterized N-term 69.9 1.5E+02 0.0032 31.1 19.3 92 330-424 65-158 (711)
357 KOG0276 Vesicle coat complex C 69.9 56 0.0012 34.7 11.0 98 75-189 649-746 (794)
358 COG3947 Response regulator con 69.7 1.1E+02 0.0024 29.5 13.8 72 263-335 281-357 (361)
359 TIGR03504 FimV_Cterm FimV C-te 69.3 8.6 0.00019 25.1 3.5 26 476-501 4-29 (44)
360 KOG4648 Uncharacterized conser 68.8 11 0.00024 36.7 5.5 88 405-499 105-193 (536)
361 TIGR03504 FimV_Cterm FimV C-te 68.3 13 0.00027 24.3 4.1 25 267-291 5-29 (44)
362 KOG0890 Protein kinase of the 67.6 3.5E+02 0.0075 34.4 29.3 279 204-501 1388-1700(2382)
363 PF07163 Pex26: Pex26 protein; 67.4 65 0.0014 30.8 10.0 87 368-457 89-182 (309)
364 KOG2758 Translation initiation 67.0 1.3E+02 0.0028 29.4 13.9 169 316-499 20-195 (432)
365 KOG4279 Serine/threonine prote 65.8 68 0.0015 35.0 10.8 109 263-398 203-321 (1226)
366 PF10579 Rapsyn_N: Rapsyn N-te 65.7 17 0.00037 27.1 4.8 47 374-420 18-66 (80)
367 smart00028 TPR Tetratricopepti 65.3 11 0.00024 21.1 3.5 27 364-390 3-29 (34)
368 PRK11619 lytic murein transgly 65.0 2.3E+02 0.0049 31.4 37.9 244 244-506 255-511 (644)
369 KOG3364 Membrane protein invol 64.5 86 0.0019 26.4 9.2 73 394-472 29-106 (149)
370 PF08311 Mad3_BUB1_I: Mad3/BUB 63.8 83 0.0018 26.2 9.3 46 449-496 79-124 (126)
371 KOG0686 COP9 signalosome, subu 63.6 1.7E+02 0.0038 29.6 13.3 159 333-499 152-332 (466)
372 KOG4642 Chaperone-dependent E3 63.4 29 0.00063 32.2 6.8 84 409-499 22-106 (284)
373 PF13174 TPR_6: Tetratricopept 62.9 8.6 0.00019 22.6 2.5 20 371-390 9-28 (33)
374 KOG4507 Uncharacterized conser 62.4 28 0.00061 36.6 7.3 127 348-482 590-721 (886)
375 PF10366 Vps39_1: Vacuolar sor 62.1 82 0.0018 25.4 8.7 27 435-461 41-67 (108)
376 PF13762 MNE1: Mitochondrial s 61.9 98 0.0021 26.5 9.3 46 399-445 81-127 (145)
377 KOG2471 TPR repeat-containing 59.6 1.5E+02 0.0032 30.9 11.5 103 339-444 248-380 (696)
378 cd08819 CARD_MDA5_2 Caspase ac 59.5 57 0.0012 25.0 6.7 65 47-113 21-85 (88)
379 PRK13800 putative oxidoreducta 59.3 3.4E+02 0.0075 31.6 29.1 45 60-104 632-676 (897)
380 PF14853 Fis1_TPR_C: Fis1 C-te 59.0 55 0.0012 22.4 6.6 26 474-499 4-29 (53)
381 PRK13800 putative oxidoreducta 58.8 3.5E+02 0.0076 31.5 27.4 161 221-390 719-880 (897)
382 PF15469 Sec5: Exocyst complex 58.7 1.3E+02 0.0027 27.0 10.4 118 365-512 60-180 (182)
383 KOG3807 Predicted membrane pro 58.0 60 0.0013 31.6 8.2 101 368-472 281-397 (556)
384 PRK10941 hypothetical protein; 58.0 1E+02 0.0022 29.7 10.0 60 437-500 185-244 (269)
385 KOG0687 26S proteasome regulat 57.8 1.9E+02 0.0041 28.5 11.3 26 399-424 106-131 (393)
386 PF07163 Pex26: Pex26 protein; 57.8 1.1E+02 0.0025 29.3 9.7 85 268-354 90-181 (309)
387 PF11846 DUF3366: Domain of un 57.1 55 0.0012 29.6 7.9 37 462-499 136-172 (193)
388 COG1747 Uncharacterized N-term 57.1 2.6E+02 0.0056 29.5 20.4 156 263-425 68-233 (711)
389 KOG1308 Hsp70-interacting prot 57.0 7.3 0.00016 38.0 2.1 93 408-506 125-217 (377)
390 PF08424 NRDE-2: NRDE-2, neces 56.9 2.1E+02 0.0046 28.4 16.8 120 379-502 48-185 (321)
391 COG4455 ImpE Protein of avirul 56.9 88 0.0019 28.8 8.5 76 365-442 4-81 (273)
392 KOG4077 Cytochrome c oxidase, 54.8 68 0.0015 26.5 6.8 59 380-440 67-125 (149)
393 COG4455 ImpE Protein of avirul 54.2 50 0.0011 30.3 6.6 47 305-352 10-56 (273)
394 PF04910 Tcf25: Transcriptiona 54.1 2.5E+02 0.0055 28.5 18.5 30 328-357 37-66 (360)
395 smart00777 Mad3_BUB1_I Mad3/BU 53.3 54 0.0012 27.3 6.3 44 450-495 80-123 (125)
396 KOG2300 Uncharacterized conser 53.0 2.9E+02 0.0063 28.9 31.7 177 246-422 298-510 (629)
397 PF11663 Toxin_YhaV: Toxin wit 52.8 19 0.00042 30.0 3.6 32 106-139 107-138 (140)
398 PF14853 Fis1_TPR_C: Fis1 C-te 52.6 50 0.0011 22.6 5.0 34 368-403 7-40 (53)
399 cd02679 MIT_spastin MIT: domai 51.8 44 0.00095 25.1 5.0 46 445-499 20-67 (79)
400 PF10366 Vps39_1: Vacuolar sor 51.7 1E+02 0.0023 24.8 7.7 28 262-289 40-67 (108)
401 PF09477 Type_III_YscG: Bacter 51.4 1.3E+02 0.0028 24.2 10.2 76 144-226 21-96 (116)
402 cd08819 CARD_MDA5_2 Caspase ac 50.7 1.1E+02 0.0023 23.6 6.9 38 343-381 48-85 (88)
403 KOG0403 Neoplastic transformat 50.3 3.1E+02 0.0067 28.3 21.5 27 232-258 347-373 (645)
404 KOG2063 Vacuolar assembly/sort 49.9 4.5E+02 0.0098 30.1 17.4 27 96-122 506-532 (877)
405 PF11846 DUF3366: Domain of un 49.0 70 0.0015 28.9 7.2 31 429-459 140-170 (193)
406 PRK10941 hypothetical protein; 47.1 2E+02 0.0043 27.7 10.1 57 366-424 185-242 (269)
407 COG5187 RPN7 26S proteasome re 46.6 2.3E+02 0.005 27.3 9.9 29 397-425 115-143 (412)
408 PF11768 DUF3312: Protein of u 46.5 1.6E+02 0.0036 31.1 9.9 57 335-391 412-473 (545)
409 PF13929 mRNA_stabil: mRNA sta 46.0 2.9E+02 0.0063 26.8 17.7 64 161-224 199-263 (292)
410 PRK10564 maltose regulon perip 45.8 40 0.00088 32.6 5.1 41 262-302 258-298 (303)
411 COG0790 FOG: TPR repeat, SEL1 45.7 2.9E+02 0.0063 26.8 18.3 144 347-501 93-267 (292)
412 PF09670 Cas_Cas02710: CRISPR- 45.4 2.5E+02 0.0054 28.8 11.1 53 372-425 141-197 (379)
413 PF14689 SPOB_a: Sensor_kinase 44.0 57 0.0012 23.1 4.5 26 435-460 25-50 (62)
414 PF12862 Apc5: Anaphase-promot 43.6 1E+02 0.0022 24.0 6.4 28 439-466 47-74 (94)
415 KOG2581 26S proteasome regulat 43.4 3.8E+02 0.0082 27.4 12.1 89 406-500 178-276 (493)
416 KOG4077 Cytochrome c oxidase, 43.3 1.1E+02 0.0025 25.3 6.4 47 112-158 67-113 (149)
417 KOG4507 Uncharacterized conser 43.2 70 0.0015 33.9 6.5 111 80-191 590-703 (886)
418 KOG0376 Serine-threonine phosp 43.2 84 0.0018 32.5 7.1 49 374-424 16-65 (476)
419 PRK13342 recombination factor 42.6 4.1E+02 0.0089 27.5 18.1 152 293-480 173-331 (413)
420 PF04910 Tcf25: Transcriptiona 42.2 3.8E+02 0.0083 27.1 16.0 55 268-322 110-165 (360)
421 PRK10564 maltose regulon perip 42.0 48 0.001 32.1 5.0 42 363-404 258-299 (303)
422 PRK11619 lytic murein transgly 41.5 5.4E+02 0.012 28.6 31.4 70 206-276 106-178 (644)
423 KOG0991 Replication factor C, 41.2 3.1E+02 0.0067 25.7 11.1 150 233-407 133-282 (333)
424 COG5108 RPO41 Mitochondrial DN 40.9 1.5E+02 0.0033 32.0 8.6 43 204-246 33-81 (1117)
425 cd08326 CARD_CASP9 Caspase act 40.7 95 0.0021 23.7 5.5 62 48-113 19-80 (84)
426 PF14689 SPOB_a: Sensor_kinase 39.3 66 0.0014 22.8 4.2 27 399-425 25-51 (62)
427 PF11848 DUF3368: Domain of un 39.3 1.1E+02 0.0025 20.2 5.2 34 271-304 12-45 (48)
428 PF00244 14-3-3: 14-3-3 protei 38.3 3.5E+02 0.0075 25.5 10.7 59 266-324 6-65 (236)
429 PF13934 ELYS: Nuclear pore co 37.8 3.4E+02 0.0075 25.3 12.2 94 176-275 90-186 (226)
430 PF15161 Neuropep_like: Neurop 37.7 15 0.00032 24.9 0.6 17 592-609 11-27 (65)
431 TIGR01503 MthylAspMut_E methyl 37.4 2.5E+02 0.0055 29.1 9.4 194 311-523 69-294 (480)
432 PRK14700 recombination factor 37.0 4.1E+02 0.0089 26.0 13.2 49 263-311 125-176 (300)
433 PF12968 DUF3856: Domain of Un 37.0 2.4E+02 0.0052 23.3 10.6 63 435-497 57-126 (144)
434 PF11848 DUF3368: Domain of un 36.9 1.3E+02 0.0027 20.0 5.1 33 373-405 13-45 (48)
435 COG2909 MalT ATP-dependent tra 36.9 6.8E+02 0.015 28.5 28.8 337 145-496 297-684 (894)
436 KOG2063 Vacuolar assembly/sort 35.9 7.3E+02 0.016 28.6 23.9 28 263-290 506-533 (877)
437 PF08311 Mad3_BUB1_I: Mad3/BUB 35.9 2.6E+02 0.0056 23.3 9.3 42 380-421 81-123 (126)
438 KOG2034 Vacuolar sorting prote 35.7 7.1E+02 0.015 28.3 24.5 169 207-387 366-555 (911)
439 PF11663 Toxin_YhaV: Toxin wit 35.5 38 0.00083 28.3 2.8 33 272-306 106-138 (140)
440 KOG0292 Vesicle coat complex C 35.4 4.4E+02 0.0096 29.9 11.2 134 339-502 651-784 (1202)
441 smart00386 HAT HAT (Half-A-TPR 35.0 81 0.0018 17.9 3.7 27 448-478 2-28 (33)
442 PF07720 TPR_3: Tetratricopept 34.9 70 0.0015 19.8 3.3 23 473-495 3-25 (36)
443 KOG1114 Tripeptidyl peptidase 34.8 7.6E+02 0.017 28.4 13.3 43 406-448 1240-1282(1304)
444 PF13929 mRNA_stabil: mRNA sta 34.5 4.4E+02 0.0096 25.6 15.5 65 393-457 198-262 (292)
445 cd08326 CARD_CASP9 Caspase act 34.0 95 0.0021 23.7 4.6 34 244-277 44-77 (84)
446 PF12931 Sec16_C: Sec23-bindin 34.0 4.5E+02 0.0098 25.6 15.1 28 437-464 202-229 (284)
447 PF08424 NRDE-2: NRDE-2, neces 34.0 4.8E+02 0.01 25.9 14.2 62 278-341 48-109 (321)
448 PRK14962 DNA polymerase III su 33.6 5.1E+02 0.011 27.5 11.5 35 272-306 254-288 (472)
449 COG4941 Predicted RNA polymera 33.6 4.5E+02 0.0098 26.1 9.8 111 347-460 272-392 (415)
450 COG4976 Predicted methyltransf 33.4 69 0.0015 29.7 4.3 55 443-501 5-59 (287)
451 PF10255 Paf67: RNA polymerase 33.2 2.5E+02 0.0053 28.9 8.6 57 232-288 124-191 (404)
452 PF11817 Foie-gras_1: Foie gra 33.1 1.3E+02 0.0028 28.6 6.5 20 404-423 185-204 (247)
453 KOG4642 Chaperone-dependent E3 33.1 4.2E+02 0.0092 25.0 11.3 97 344-442 23-126 (284)
454 PRK13342 recombination factor 33.0 5.7E+02 0.012 26.5 14.9 48 263-310 229-279 (413)
455 TIGR02710 CRISPR-associated pr 32.9 5.5E+02 0.012 26.2 11.7 52 371-422 139-196 (380)
456 PF14669 Asp_Glu_race_2: Putat 32.9 3.8E+02 0.0081 24.3 13.8 55 301-355 137-205 (233)
457 KOG2582 COP9 signalosome, subu 32.8 5.3E+02 0.011 26.0 13.2 56 271-326 287-346 (422)
458 PF08225 Antimicrobial19: Pseu 32.3 28 0.00062 18.2 1.0 14 596-609 8-21 (23)
459 PF10345 Cohesin_load: Cohesin 31.9 7.3E+02 0.016 27.3 36.7 435 60-499 27-605 (608)
460 PF09670 Cas_Cas02710: CRISPR- 31.2 5.9E+02 0.013 26.0 11.9 55 270-325 140-198 (379)
461 PF04762 IKI3: IKI3 family; I 30.9 9.3E+02 0.02 28.2 14.1 21 206-226 701-721 (928)
462 PF10516 SHNi-TPR: SHNi-TPR; 30.8 1.4E+02 0.0031 18.7 4.4 25 436-460 4-28 (38)
463 COG0735 Fur Fe2+/Zn2+ uptake r 30.2 2.6E+02 0.0057 23.9 7.3 60 118-178 10-69 (145)
464 KOG3824 Huntingtin interacting 29.7 99 0.0021 29.9 4.8 50 444-497 127-176 (472)
465 cd08332 CARD_CASP2 Caspase act 29.3 1.6E+02 0.0035 22.7 5.3 58 48-109 23-80 (90)
466 KOG3807 Predicted membrane pro 29.3 3.3E+02 0.0071 26.8 8.2 17 307-323 286-302 (556)
467 COG0790 FOG: TPR repeat, SEL1 28.5 5.4E+02 0.012 24.8 21.1 50 245-294 92-146 (292)
468 COG2256 MGS1 ATPase related to 28.4 6.7E+02 0.014 25.8 14.4 53 259-311 244-299 (436)
469 PF10255 Paf67: RNA polymerase 28.2 2.7E+02 0.0058 28.7 7.9 55 202-256 125-190 (404)
470 KOG2908 26S proteasome regulat 27.8 6.2E+02 0.013 25.2 9.9 88 417-504 58-153 (380)
471 KOG4521 Nuclear pore complex, 27.8 1.1E+03 0.024 28.0 13.6 158 330-494 919-1125(1480)
472 PF14427 Pput2613-deam: Pput_2 27.7 2.1E+02 0.0046 22.9 5.5 57 563-619 44-100 (118)
473 smart00638 LPD_N Lipoprotein N 27.5 8.3E+02 0.018 26.6 20.4 58 230-289 310-368 (574)
474 cd00280 TRFH Telomeric Repeat 27.4 4.6E+02 0.01 23.6 8.4 18 440-457 118-135 (200)
475 TIGR02270 conserved hypothetic 27.1 7.2E+02 0.016 25.8 25.2 29 162-190 98-126 (410)
476 KOG0376 Serine-threonine phosp 26.9 1.3E+02 0.0028 31.2 5.4 101 307-410 15-118 (476)
477 PRK11639 zinc uptake transcrip 26.8 2.8E+02 0.0061 24.5 7.1 44 137-180 33-76 (169)
478 COG5159 RPN6 26S proteasome re 26.8 5.9E+02 0.013 24.7 18.3 154 269-422 11-190 (421)
479 PF12796 Ank_2: Ankyrin repeat 26.5 1.8E+02 0.004 21.8 5.3 14 74-87 5-18 (89)
480 KOG4814 Uncharacterized conser 26.4 3.8E+02 0.0083 29.1 8.7 58 437-498 398-455 (872)
481 PHA02875 ankyrin repeat protei 26.3 7.2E+02 0.016 25.5 17.5 19 70-88 39-57 (413)
482 PF07575 Nucleopor_Nup85: Nup8 26.3 5.1E+02 0.011 28.3 10.4 20 202-221 408-427 (566)
483 PHA02875 ankyrin repeat protei 26.2 7.2E+02 0.016 25.5 17.7 172 74-257 10-192 (413)
484 PF11838 ERAP1_C: ERAP1-like C 26.2 6.3E+02 0.014 24.8 19.7 28 397-424 201-228 (324)
485 PF14044 NETI: NETI protein 26.1 51 0.0011 22.7 1.7 17 535-551 10-26 (57)
486 KOG3364 Membrane protein invol 26.1 4.1E+02 0.0089 22.6 9.8 68 430-500 29-100 (149)
487 KOG0551 Hsp90 co-chaperone CNS 25.8 2.8E+02 0.006 27.5 7.1 87 368-457 87-177 (390)
488 PF04190 DUF410: Protein of un 25.6 6E+02 0.013 24.3 16.3 70 431-500 88-170 (260)
489 KOG2297 Predicted translation 25.5 6.5E+02 0.014 24.7 13.3 23 361-383 320-342 (412)
490 PRK11639 zinc uptake transcrip 25.5 2.6E+02 0.0056 24.7 6.6 61 388-450 17-77 (169)
491 KOG2659 LisH motif-containing 25.4 5.6E+02 0.012 23.9 10.1 28 439-466 70-97 (228)
492 COG0735 Fur Fe2+/Zn2+ uptake r 25.4 3.3E+02 0.0071 23.3 7.0 65 384-450 8-72 (145)
493 PF11817 Foie-gras_1: Foie gra 25.1 4.7E+02 0.01 24.8 8.8 71 247-317 162-239 (247)
494 PF02184 HAT: HAT (Half-A-TPR) 24.7 1.6E+02 0.0034 17.8 3.3 21 378-400 3-23 (32)
495 PF10475 DUF2450: Protein of u 24.7 1.9E+02 0.0041 28.3 6.2 108 170-286 104-222 (291)
496 PF05119 Terminase_4: Phage te 24.4 3.4E+02 0.0075 21.1 7.8 29 525-553 60-88 (100)
497 PF07575 Nucleopor_Nup85: Nup8 24.3 2.7E+02 0.0058 30.4 7.8 32 273-304 507-538 (566)
498 COG5187 RPN7 26S proteasome re 23.7 6.3E+02 0.014 24.5 8.8 22 233-254 118-139 (412)
499 PF12926 MOZART2: Mitotic-spin 23.3 3.5E+02 0.0076 20.8 6.6 62 127-190 8-69 (88)
500 cd08332 CARD_CASP2 Caspase act 22.8 2E+02 0.0043 22.2 4.7 32 244-275 48-79 (90)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.7e-120 Score=1019.86 Aligned_cols=619 Identities=33% Similarity=0.568 Sum_probs=598.3
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
+++++|..++..|... +..|+..||..++.+|+. +..+.++|..+++.|+.||+.++|+||.+|+++|+++.|.
T Consensus 166 g~~~~A~~~f~~M~~~---g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 242 (857)
T PLN03077 166 GYFDEALCLYHRMLWA---GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSAR 242 (857)
T ss_pred CCHHHHHHHHHHHHHc---CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHH
Confidence 4567888888888765 578999999999999986 8899999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
++|++|+.+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.++|..+.+.|+.||
T Consensus 243 ~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 243 LVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred HHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-----------------
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 226 (636)
..+||+|+.+|+++|++++|.++|++|. .||..+||++|.+|++.|++++|+++|++|.
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a 398 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH
Confidence 9999999999999999999999999998 8999999999999999999999999999985
Q ss_pred ----------------------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 227 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
.++..++++|+++|+++|++++|.++|++|.++|+++||++|.+|+++|+.++|+.+|
T Consensus 399 ~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf 478 (857)
T PLN03077 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF 478 (857)
T ss_pred HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhc
Q 006672 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (636)
++|.. ++.||..||+.++.+|++.|+++.+.++|..+.+.|+.++..++++|+++|+++|++++|.++|+.+ ++|+++
T Consensus 479 ~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s 556 (857)
T PLN03077 479 RQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVS 556 (857)
T ss_pred HHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhh
Confidence 99986 5999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~ 636 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG 636 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999977999999999999999999
Q ss_pred hcCCchHHHHHHH----------------------------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 445 RVGQDSQGYQNSQ----------------------------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 445 ~~g~~~~A~~~~~----------------------------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
|.|++++|.++++ .+.+++++++|+++..|..|+++|+..|+|++|.++++.
T Consensus 637 r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 637 RAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred hCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999999998 356688899999999999999999999999999999999
Q ss_pred HHhCCCccCCeeeEEEECCEEEEecCCC--cccHHHHHHHHHHHHHHHHHcCCcCCCccccccchHHHhhhhhhhhHHHH
Q 006672 497 MQRRSIKKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEEKEEALGCHSEKLA 574 (636)
Q Consensus 497 m~~~g~~~~~~~s~i~~~~~~~~~~~~~--~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~hs~~la 574 (636)
|+++|++|+||||||++++++|.|..|| ||+.++||..+++|..+|++.||+||+++++++.+++|+..+++||||||
T Consensus 717 M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~k~~~~~~hse~la 796 (857)
T PLN03077 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEIEVSKDDIFCGHSERLA 796 (857)
T ss_pred HHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhccccHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999999 99999999999999999999999999999886644339999999999999
Q ss_pred HHHhccCCCCCCcEEEeeccccccchhhHHHHhhhhcCceEEEec-CcccccccccccCCC
Q 006672 575 LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRD 634 (636)
Q Consensus 575 ~~~~~~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~~g~csc~~ 634 (636)
+|||||+||||.||||+||||||+|||+++||||++++|+||||| +|||||+||+|||+|
T Consensus 797 ~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 797 IAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999 999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5e-113 Score=941.79 Aligned_cols=573 Identities=29% Similarity=0.497 Sum_probs=556.4
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCC-----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFT-----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (636)
.++...++++|..|.+.|++++|.++|+.|. .||..+|++++.+|++.++++.|..++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999885 46889999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCC
Q 006672 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 214 (636)
++.+|++.|+++.|.++|+.|. .||..+||+++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999984 589999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhCC----CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 215 LRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 215 ~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
.+.+.+++..+. .+|..++++|+++|+++|++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999987775 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHH
Q 006672 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIW 370 (636)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 370 (636)
|+.||..||++++.+|++.|+++.|.++|..+.+.|+++|..++++|+++|+++|++++|.++|++|.++|+.+||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+++|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHHHHHH----------------------------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 451 QGYQNSQ----------------------------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 451 ~A~~~~~----------------------------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
+|.++++ ++.+++++++|++..+|+.|+++|++.|+|++|.+++++|+++|+
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 9999998 445677889999999999999999999999999999999999999
Q ss_pred ccCCeeeEEEECCEEEEecCCC--cccHHHHHHHHHHHHHHHHHcCCcCCCccccccchHH-HhhhhhhhhHHHHHHHhc
Q 006672 503 KKDPGWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-KEEALGCHSEKLALAFGL 579 (636)
Q Consensus 503 ~~~~~~s~i~~~~~~~~~~~~~--~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~-~~~~~~~hs~~la~~~~~ 579 (636)
++.|||||+++++.+|.|.+|| ||+..+||+.+.++..+|++.||+||+.+++||++++ |+..+++||||||+||||
T Consensus 560 ~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l 639 (697)
T PLN03081 560 SMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGL 639 (697)
T ss_pred ccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhC
Confidence 9999999999999999999999 9999999999999999999999999999999999988 999999999999999999
Q ss_pred cCCCCCCcEEEeeccccccchhhHHHHhhhhcCceEEEec-CcccccccccccCCCCC
Q 006672 580 IQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCSCRDYW 636 (636)
Q Consensus 580 ~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~~g~csc~~~~ 636 (636)
|++|||.||||+||||||+|||+++||||++++|+||||| +|||||+||+|||+|||
T Consensus 640 ~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 640 INTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred ccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999 99999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-71 Score=625.96 Aligned_cols=598 Identities=24% Similarity=0.354 Sum_probs=513.5
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
+++.+|...+..+...+ ..|+..++..++.+|.+ ++.|.++|+.+++.|..++..++|+||.+|+++|+++.|.
T Consensus 65 g~~~~A~~l~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~ 141 (857)
T PLN03077 65 GQLEQALKLLESMQELR---VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAW 141 (857)
T ss_pred CCHHHHHHHHHHHHhcC---CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHH
Confidence 56777888888777654 56777888888888865 8999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.++|..+.+.|+.||
T Consensus 142 ~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~ 221 (857)
T PLN03077 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELD 221 (857)
T ss_pred HHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-----------------
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----------------- 226 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----------------- 226 (636)
+.++|+|+.+|+++|++++|.++|++|+ .||..+||++|.+|++.|++++|+++|++|.
T Consensus 222 ~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a 297 (857)
T PLN03077 222 VDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297 (857)
T ss_pred cchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 9999999999999999999999999999 8899999999999999999999999999995
Q ss_pred ----------------------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 227 ----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 227 ----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
.||..+|++|+.+|+++|++++|.++|++|..+|+++||++|.+|.+.|++++|+++|
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf 377 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETY 377 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhc
Q 006672 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT 364 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 364 (636)
++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++++|+++|+++|++++|.++|++|.++|+++
T Consensus 378 ~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs 457 (857)
T PLN03077 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457 (857)
T ss_pred HHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
||+||.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+ .|+.++..++++|+++|.
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYV 535 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHH
Confidence 99999999999999999999999986 5999999999999999999999999999999995 899999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEec-CC
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE-AG 523 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~-~~ 523 (636)
++|++++|.++|+++ ++|..+|++|+.+|++.|+.++|.++|++|.+.|+.|+......-+ ..+. .|
T Consensus 536 k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll----~a~~~~g 603 (857)
T PLN03077 536 RCGRMNYAWNQFNSH--------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL----CACSRSG 603 (857)
T ss_pred HcCCHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH----HHHhhcC
Confidence 999999999999843 4589999999999999999999999999999999998852211000 0000 11
Q ss_pred CcccHHHHHHHHHHHHHHHH-HcCCcCCCccccccc---------hHH---------------Hhhhhh---hh--h---
Q 006672 524 GHKLAKEIHSKLEDIMAGAR-EQGYMPGTEWVLHNI---------KEE---------------KEEALG---CH--S--- 570 (636)
Q Consensus 524 ~~~~~~~i~~~l~~l~~~~~-~~g~~p~~~~~~~~~---------~~~---------------~~~~~~---~h--s--- 570 (636)
. .+...++++.|+ +.|..|+......-+ ++- ...++. .| -
T Consensus 604 ~-------v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~ 676 (857)
T PLN03077 604 M-------VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676 (857)
T ss_pred h-------HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHH
Confidence 1 222334555565 556666643321100 000 000110 01 1
Q ss_pred HHHH-HHHhccCCCCCCcEEEeeccccccchhhHHHHhhhhcCc--------eEEEecCcccccccccccC
Q 006672 571 EKLA-LAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQR--------EIVLRDTRFHYFKDGTCSC 632 (636)
Q Consensus 571 ~~la-~~~~~~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~--------~~~~~d~~~h~~~~g~csc 632 (636)
|+.| ..+.+.+..++..+.+.+-+...|+..++.+....|-.+ ..|.-++..|-|..|.-|-
T Consensus 677 e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h 747 (857)
T PLN03077 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESH 747 (857)
T ss_pred HHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCC
Confidence 1111 234455555555544444456778899999888766554 4443346778887776554
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.8e-64 Score=558.54 Aligned_cols=503 Identities=15% Similarity=0.193 Sum_probs=456.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchH
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNL-FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 112 (636)
...-+..++++++|.++++.|.+.|. .++..+++.++..|.+.|.+++|.++|+.|+.||..+||.+|.+|++.|++++
T Consensus 376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHH
Confidence 33333345789999999999999985 57888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192 (636)
Q Consensus 113 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 192 (636)
|+++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.+
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Chh
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK----GVV 262 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~ 262 (636)
.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++|.++|+.|.+. +..
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ 615 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChH
Confidence 9999999999999999999999999999999995 589999999999999999999999999999864 468
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.|+..+|++|+.+|+
T Consensus 616 tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~ 695 (1060)
T PLN03218 616 VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695 (1060)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHhhcc----CCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 006672 343 KCGNIEAASLVFGETK----EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
++|++++|.++|++|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+
T Consensus 696 k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~ 775 (1060)
T PLN03218 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999995 489999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHH----hcC-------------------CchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLS----RVG-------------------QDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+|+.|.+ .|+.|+..+|+++++++. +++ ..++|..+|++|.+.++ .| |..+|.
T Consensus 776 l~~~M~k-~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi--~P-d~~T~~ 851 (1060)
T PLN03218 776 LLSQAKE-DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT--LP-TMEVLS 851 (1060)
T ss_pred HHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC--CC-CHHHHH
Confidence 9999985 899999999999998743 222 23678999999987743 45 788999
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHHHHHHHHcCCcCCCc
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAREQGYMPGTE 552 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~p~~~ 552 (636)
.++.++...+.++.+..+++.|...+..++... .+..++.+ +.+ ....-.++++|.+.|+.|+.+
T Consensus 852 ~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~----y~~Li~g~--~~~------~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 852 QVLGCLQLPHDATLRNRLIENLGISADSQKQSN----LSTLVDGF--GEY------DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHhcccccHHHHHHHHHHhccCCCCcchhh----hHHHHHhh--ccC------hHHHHHHHHHHHHcCCCCCcc
Confidence 999888889999999999988877665544311 11122212 111 123456889999999999976
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-61 Score=536.46 Aligned_cols=535 Identities=14% Similarity=0.178 Sum_probs=463.9
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhc---CChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSS---NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
+++.+|.++|+.|...+. ..++..+...++..| +.+++|..++..|.. |+..+|+.||..|++.|+++.|.
T Consensus 384 G~l~eAl~Lfd~M~~~gv--v~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~ 457 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGL--LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGAL 457 (1060)
T ss_pred cCHHHHHHHHHHHHhCCC--CCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHH
Confidence 577899999999887654 234555555555554 559999999988864 89999999999999999999999
Q ss_pred HHhccCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 006672 84 SIFDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG 159 (636)
Q Consensus 84 ~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 159 (636)
++|+.|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+.|.+.|
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 9999886 689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC--CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHH
Q 006672 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE--KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASW 233 (636)
Q Consensus 160 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~ 233 (636)
+.||..+||.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|+.|. .|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999975 6789999999999999999999999999999998 4677999
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPE----KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+.+|.+|++.|++++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~ 697 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999984 678999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 310 GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
|++++|.++|+.|.+.|+.||..+|++||.+|++.|++++|.++|++|.. ||..+|++++.+|++.|+.++|.++|
T Consensus 698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~ 777 (1060)
T PLN03218 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999974 89999999999999999999999999
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHh----c-------------------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 386 KKMMYSGTEPDGTVFLAILTACWY----S-------------------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 386 ~~m~~~g~~p~~~t~~~ll~a~~~----~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
++|.+.|+.||..+|+.++..|.+ . +..++|..+|++|.+ .|+.|+..+|+.++.+
T Consensus 778 ~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~-~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 778 SQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS-AGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Confidence 999999999999999999876542 1 224679999999995 8999999999999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecC
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEA 522 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~ 522 (636)
+.+.+..+.+..+++.+. ..-.+++..+|++|++++.+ ..++|..++++|.+.|+.|+....-...--.++.+-.
T Consensus 857 l~~~~~~~~~~~m~~~m~---~~~~~~~~~~y~~Li~g~~~--~~~~A~~l~~em~~~Gi~p~~~~~~~~~~~d~~~~~~ 931 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLG---ISADSQKQSNLSTLVDGFGE--YDPRAFSLLEEAASLGVVPSVSFKKSPIVIDAEELPV 931 (1060)
T ss_pred hcccccHHHHHHHHHHhc---cCCCCcchhhhHHHHHhhcc--ChHHHHHHHHHHHHcCCCCCcccccCceEEEcccCcc
Confidence 988888888888877543 23345578899999998832 2368999999999999998864211122223344443
Q ss_pred CCcccHHH-HHHHHHHHHHHHHHcC-CcCCCcccccc
Q 006672 523 GGHKLAKE-IHSKLEDIMAGAREQG-YMPGTEWVLHN 557 (636)
Q Consensus 523 ~~~~~~~~-i~~~l~~l~~~~~~~g-~~p~~~~~~~~ 557 (636)
|- ++. +...+..+.... +.| ..|.-...++.
T Consensus 932 ~a---a~~~l~~wl~~~~~~~-~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 932 FA---AEVYLLTILKGLKHRL-AAGAKLPNVTILLPT 964 (1060)
T ss_pred hh---HHHHHHHHHHHHHHHH-hccCcCCcceeeecc
Confidence 32 111 223455555554 445 45654443444
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.3e-62 Score=537.64 Aligned_cols=550 Identities=17% Similarity=0.236 Sum_probs=469.1
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYAL 83 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 83 (636)
++..+|+.+|..+...+ +..|+..++..++.+|.+ ++.+.++|..+.+.|+.||+.++|.|+.+|+++|+++.|.
T Consensus 101 g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 101 GRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred CCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 45677888887776533 345889999999999876 8899999999999999999999999999999999999999
Q ss_pred HHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 84 SIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 84 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
++|++|+.||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.+.++|..+.+.|+.+|
T Consensus 179 ~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d 258 (697)
T PLN03081 179 RLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258 (697)
T ss_pred HHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHHHHHHHH
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDG 239 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~ 239 (636)
..++|+|+++|+++|++++|.++|++|. ++|+++||+||.+|++.|++++|+++|++|. .||..+|++++.+
T Consensus 259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 259 TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 8899999999999999999999999999995 6899999999999
Q ss_pred HHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 240 FMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
|++.|++++|.+++..|. .+|+.+||+||.+|++.|++++|.++|++|. .||..||++++.+|++.|+.++|
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHH
Confidence 999999999999999986 4678999999999999999999999999996 47999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.++|++|.+.|+.||..+|++++.+|++.|.+++|.++|+.|.+ |+..+|+.|+.+|++.|+.++|.+++++|
T Consensus 411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-- 488 (697)
T PLN03081 411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-- 488 (697)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC--
Confidence 99999999999999999999999999999999999999999964 78899999999999999999999999876
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 391 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
+..|+..+|+.++.+|...|+++.|..+++++. ++.|+ ..+|..|+++|++.|++++|.+++++|.++++...|.
T Consensus 489 -~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 489 -PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred -CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 578999999999999999999999999999986 35664 7899999999999999999999999999998776654
Q ss_pred CchhHHHHHH-------H---H-HHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHH
Q 006672 470 HPSSYVLLSN-------I---Y-AAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDI 538 (636)
Q Consensus 470 ~~~~~~~l~~-------~---~-~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l 538 (636)
- +|..+.+ . + ....-++...++.++|++.|+.|+..+...++... .....+....++|
T Consensus 565 ~--s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~---------~~~~~~~~hsekl 633 (697)
T PLN03081 565 C--TWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDED---------EEKVSGRYHSEKL 633 (697)
T ss_pred e--eEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHH---------HHHHHHHhccHHH
Confidence 2 2211100 0 0 00111445678889999999999875433222111 0001111111111
Q ss_pred HHHHHHcCCc--CCC--ccccccchHHHhhhhhhhhHHHHHHHhccCCCCCCcEEEeeccc
Q 006672 539 MAGAREQGYM--PGT--EWVLHNIKEEKEEALGCHSEKLALAFGLIQTTPGTTIKIVKKLT 595 (636)
Q Consensus 539 ~~~~~~~g~~--p~~--~~~~~~~~~~~~~~~~~hs~~la~~~~~~~~~~~~~~~i~~nl~ 595 (636)
- ...|.. |.. .-++.++.-| ..||+ ++.+|+...+..|-|-++-|
T Consensus 634 a---~a~~l~~~~~~~~i~i~knlr~c----~dch~-----~~k~~s~~~~r~i~~rd~~r 682 (697)
T PLN03081 634 A---IAFGLINTSEWTPLQITQSHRIC----KDCHK-----VIKFIALVTKREIVVRDASR 682 (697)
T ss_pred H---HHhhCccCCCCCeEEEecCCEEC----CCchh-----hHHHHhhhcceEEEEecCCc
Confidence 1 133432 221 1222333222 23676 78889999999988887766
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.98 E-value=4.8e-28 Score=278.96 Aligned_cols=444 Identities=13% Similarity=0.081 Sum_probs=243.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHH
Q 006672 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 41 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
.+++++|.+.+..+.+... .+...+..+...+...|++++|.+.|+.+. +.+...+..++..+.+.|++++|+.++
T Consensus 376 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 376 LGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 3334444444444443321 123333334444444444444444443322 112223333444444444444555444
Q ss_pred HHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCC
Q 006672 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 197 (636)
+.+... .+++..++..+...+...|++++|.+.++.+++.. +.+...+..+...+...|++++|.+.|+++...+ +.
T Consensus 455 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~ 531 (899)
T TIGR02917 455 KKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PK 531 (899)
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cC
Confidence 444432 12344455555566666666666666666665543 3334455556666666666666666666655443 44
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHH
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGF 271 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 271 (636)
+..++..+...+.+.|+.++|..+|+++. ..+...+..++..|.+.|++++|..+++.+.. .+..+|..++..|
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 55566666666666666666666666654 22334555566666666666666666666542 2345666666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHH
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAAS 351 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 351 (636)
...|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+...|++++|.
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 689 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAK 689 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666542 3344555566666666666666666666666543 444556666666666666666666
Q ss_pred HHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 352 LVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 352 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
++++.+.+ .+...+..+...+...|++++|++.|+++.. ..|+..++..+..++...|++++|.+.++.+.+ .
T Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~ 765 (899)
T TIGR02917 690 KIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLK--T 765 (899)
T ss_pred HHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--h
Confidence 66666553 2444555666666666666666666666665 334445555555666666666666666666653 1
Q ss_pred CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+.+...+..++..|.+.|++++|.+.|+++. +..|+++.++..++.++...|+ .+|+.+++++.+
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVV----KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 23345556666666666666666666665433 2345555555555555555555 445555555444
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=7.6e-28 Score=277.29 Aligned_cols=482 Identities=12% Similarity=0.084 Sum_probs=371.7
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHh
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIF 86 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f 86 (636)
++.++|...+....... |........+...+...++++.|...+..+.+.... .......++..|.+.|++++|..++
T Consensus 377 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 377 GDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHH
Confidence 45556666666555432 222222334455555667788888888888876532 3445666778888889999999888
Q ss_pred ccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC
Q 006672 87 DHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD 163 (636)
Q Consensus 87 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 163 (636)
+.+. +.+..+|+.+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++.+.+.+ +.+
T Consensus 455 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 455 KKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 8765 4467788888888888999999999998887743 1234456667777888889999999998888765 456
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHH
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGF 240 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 240 (636)
..++..+...|.+.|+.++|...|+++...+ +.+...+..++..+.+.|++++|+.+++++. +.+...|..+...|
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 7788888888888899999999888887665 6667788888888888999999998888876 34567888888888
Q ss_pred HhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 006672 241 MRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 317 (636)
.+.|++++|...|+++.+ .+...|..++..|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 690 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKK 690 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 888999999888887653 346678888888888899999999888888753 4457778888888888888888888
Q ss_pred HHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
+++.+.+.. +.+...+..+...|.+.|++++|.+.|+.+.. |+..++..++.++...|++++|.+.++++.+.. +.
T Consensus 691 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~ 768 (899)
T TIGR02917 691 IAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PN 768 (899)
T ss_pred HHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CC
Confidence 888888765 56777788888888888889988888888764 555677778888888888888888888888742 22
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+...+..+...|...|++++|.++|+++.+. -++++..+..++.++.+.|+ ++|++.++++. ++.|.++..+.
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~----~~~~~~~~~~~ 841 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKAL----KLAPNIPAILD 841 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH----hhCCCCcHHHH
Confidence 4567777788888888888888888888752 24567788888888888888 77888887554 56788888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
.++.+|...|++++|.++++++.+.+..
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 8888888888888888888888886643
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.97 E-value=3e-32 Score=221.52 Aligned_cols=102 Identities=56% Similarity=0.990 Sum_probs=93.6
Q ss_pred eeeEEEECCEEEEecCCC--cccHHHHHHHHHHHHHHHHHcCCcCCCccccccchHH-H--------hhhhhhhhHHHHH
Q 006672 507 GWSYIEVNGHVHRFEAGG--HKLAKEIHSKLEDIMAGAREQGYMPGTEWVLHNIKEE-K--------EEALGCHSEKLAL 575 (636)
Q Consensus 507 ~~s~i~~~~~~~~~~~~~--~~~~~~i~~~l~~l~~~~~~~g~~p~~~~~~~~~~~~-~--------~~~~~~hs~~la~ 575 (636)
||||+++ |.|++|| ||+. ++..++...||.|++..+.|+++++ + +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7899887 9999999 9988 4566778899999999999988776 5 5688999999999
Q ss_pred HHhccCCCCCCcEEEeecc-ccccchhhHHHHhhhhcCceEEEec-Ccccccc
Q 006672 576 AFGLIQTTPGTTIKIVKKL-TICGDCHSLMKYASKISQREIVLRD-TRFHYFK 626 (636)
Q Consensus 576 ~~~~~~~~~~~~~~i~~nl-~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~ 626 (636)
||||+++ +|+||+ |||+|||+++|+||++++|+|+||| +|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 899999 9999999999999999999999999 9999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=1.2e-20 Score=218.92 Aligned_cols=476 Identities=8% Similarity=-0.001 Sum_probs=326.0
Q ss_pred ccccccccccccccccCCCCCCCCHHHHHH-HHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHH
Q 006672 7 NRLTTAIAPTTNIKSSHKPSNNITETHIIS-LIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSI 85 (636)
Q Consensus 7 ~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 85 (636)
++.++|.+.+...+....+ ...-...+.. +...-++.++|...++.+++.. +.++.+...+...+...|+.++|...
T Consensus 126 g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~ 203 (1157)
T PRK11447 126 GRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAV 203 (1157)
T ss_pred CCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 5667777777777764322 1111111222 2222355888999999888874 33566777888888889999999888
Q ss_pred hccCCCCCc------ch-----------------HH----------------------------------HHHHHHHhCC
Q 006672 86 FDHFTPKNL------HI-----------------FN----------------------------------VLIRGLAENS 108 (636)
Q Consensus 86 f~~~~~~~~------~~-----------------~~----------------------------------~li~~~~~~g 108 (636)
|+++..... .. +. .....+...|
T Consensus 204 l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g 283 (1157)
T PRK11447 204 LEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSG 283 (1157)
T ss_pred HHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCC
Confidence 876531100 00 00 1122345567
Q ss_pred CchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHH------------HHHHHHH
Q 006672 109 HFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVR------------VHLADMY 174 (636)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~------------~~li~~~ 174 (636)
++++|+..|++..+. .| +...+..+..++.+.|++++|...|++.++...... ...+ ..+...+
T Consensus 284 ~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 284 QGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 778888888777763 34 455666666777777888888888877776543221 1111 1223456
Q ss_pred HhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHH
Q 006672 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGE 251 (636)
Q Consensus 175 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~ 251 (636)
.+.|++++|...|++..+.. +.+...+..+...+...|++++|++.|++... .+...+..+...|. .++.++|..
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHH
Confidence 67778888888887776654 45666777777778888888888888877763 33445556666664 346777777
Q ss_pred HHhhCCCCC------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 006672 252 LFEQMPEKG------------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319 (636)
Q Consensus 252 ~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 319 (636)
+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...+...|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 777665321 1234456677888899999999999988753 334566777888888999999999999
Q ss_pred HHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC----Ch---------hcHHHHHHHHHHcCChHHHHHHHH
Q 006672 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK----DL---------LTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
+.+.+.. +.++..+..+...+.+.|+.++|...++.+... +. ..+..+...+...|+.++|+++++
T Consensus 519 ~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9888654 445566666666677888889998888887642 11 112244566778888888888877
Q ss_pred HHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 387 KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 387 ~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
. ..++...+..+...+...|++++|+..|++..+. -+.++..+..++.+|...|++++|++.+++ +++.
T Consensus 598 ~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~----ll~~ 666 (1157)
T PRK11447 598 Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAK----LPAT 666 (1157)
T ss_pred h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH----Hhcc
Confidence 2 2334456667778888899999999999988852 233577888888999999999999988884 3466
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 467 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.|+++..+..++.++...|++++|.++++++....
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 88888888889999999999999999999887754
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=8e-22 Score=194.05 Aligned_cols=381 Identities=15% Similarity=0.211 Sum_probs=329.0
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh-HHHH
Q 006672 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF-VRVH 169 (636)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ 169 (636)
.-..+|..+...+-..|++++|+.+|+.|.+ ++| ....|..+..++...|+.+.|.+.|...++. .|+.. ..+.
T Consensus 114 q~ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~ 189 (966)
T KOG4626|consen 114 QGAEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSD 189 (966)
T ss_pred hHHHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhhhcc
Confidence 3456899999999999999999999999998 456 4578889999999999999999999999885 45544 3344
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCh---HHHHHHHHHHHhcCCH
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV---ASWVSLIDGFMRKGDL 246 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g~~ 246 (636)
+-......|++++|...|.+..+.. +--.++|+.|...+-.+|+...|++.|++....|+ ..|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 5555666899999999998876553 44578999999999999999999999999986554 5788999999999999
Q ss_pred HHHHHHHhhCCC--CC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 247 KKAGELFEQMPE--KG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 247 ~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
+.|...|.+... |+ .+.+..|...|...|..+-|+..|++.++. .|+ ...|+.+..++-..|++.+|.+.+...
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999987653 33 678888999999999999999999999875 454 578999999999999999999999999
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 398 (636)
+... +......+.|...|...|.+++|..+|....+ |+ ...+|.|...|.++|++++|+..|++.+. ++|+ ..
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAd 423 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFAD 423 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHH
Confidence 8765 56677889999999999999999999998876 33 45789999999999999999999999999 9999 56
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
.|+.+...|-..|+++.|.+.+.+.+. +.|. .+.++.|...|...|++.+|+..|+.+ ++++|+.+.+|..+
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~---~nPt~AeAhsNLasi~kDsGni~~AI~sY~~a----LklkPDfpdA~cNl 496 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQ---INPTFAEAHSNLASIYKDSGNIPEAIQSYRTA----LKLKPDFPDAYCNL 496 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHh---cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHH----HccCCCCchhhhHH
Confidence 899999999999999999999999885 6777 778999999999999999999999854 58999999999999
Q ss_pred HHHHHHcCChhH
Q 006672 478 SNIYAAEGRWKD 489 (636)
Q Consensus 478 ~~~~~~~g~~~~ 489 (636)
+.++---.+|.+
T Consensus 497 lh~lq~vcdw~D 508 (966)
T KOG4626|consen 497 LHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHhcccc
Confidence 888776666665
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=1.1e-19 Score=210.92 Aligned_cols=443 Identities=12% Similarity=0.059 Sum_probs=337.8
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006672 45 KQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121 (636)
Q Consensus 45 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (636)
..+...+....+....|... ...+...+...|++++|...|++.. +.+...+..+...+.+.|++++|+..|++..
T Consensus 252 ~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 252 AAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444554444433233322 2234556778999999999998764 4577889999999999999999999999998
Q ss_pred HCCCCCCcc---cHHH------------HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006672 122 RLSVRPNRL---TYPF------------VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (636)
Q Consensus 122 ~~g~~p~~~---t~~~------------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (636)
+.. |+.. .+.. ....+...|++++|...++++++.. +.+...+..+...|...|++++|++.
T Consensus 331 ~~~--p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~ 407 (1157)
T PRK11447 331 ALD--PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERY 407 (1157)
T ss_pred HhC--CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 753 4322 1211 1335668899999999999999875 45667788899999999999999999
Q ss_pred HhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC------------hHHHHHHHHHHHhcCCHHHHHHHHh
Q 006672 187 FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN------------VASWVSLIDGFMRKGDLKKAGELFE 254 (636)
Q Consensus 187 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~ 254 (636)
|++..+.. +.+...+..+...|. .++.++|+.+++.+.... ...+..+...+...|++++|.+.|+
T Consensus 408 y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~ 485 (1157)
T PRK11447 408 YQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR 485 (1157)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99988665 556777877777775 567899999998876322 1234556778889999999999999
Q ss_pred hCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCch
Q 006672 255 QMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG 331 (636)
Q Consensus 255 ~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (636)
+..+. +...+..+...|.+.|++++|...|+++.+.. +.+...+..+...+...++.++|...++.+......++.
T Consensus 486 ~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~ 564 (1157)
T PRK11447 486 QRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNI 564 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhH
Confidence 87643 35677889999999999999999999998753 234444444445567789999999998876533222221
Q ss_pred ---------hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHH
Q 006672 332 ---------AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFL 401 (636)
Q Consensus 332 ---------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 401 (636)
.....+.+.+...|+.++|.++++. ...+...+..+...+.+.|++++|+..|++..+ ..|+ ...+.
T Consensus 565 ~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~ 641 (1157)
T PRK11447 565 QELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARL 641 (1157)
T ss_pred HHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 1233567788999999999999984 234566778899999999999999999999998 5666 56888
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc------hhH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP------SSY 474 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~------~~~ 474 (636)
.+...+...|++++|.+.++...+ ..| +...+..+..++.+.|++++|.++++++.. ..|+++ ..+
T Consensus 642 ~la~~~~~~g~~~eA~~~l~~ll~---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~----~~~~~~~~~~~a~~~ 714 (1157)
T PRK11447 642 GLIEVDIAQGDLAAARAQLAKLPA---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIP----QAKSQPPSMESALVL 714 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhc---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhh----hCccCCcchhhHHHH
Confidence 999999999999999999998874 344 466778889999999999999999997654 334332 466
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh-CCCcc
Q 006672 475 VLLSNIYAAEGRWKDVARVRTLMQR-RSIKK 504 (636)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~ 504 (636)
..++.++...|++++|...+++... .|+.|
T Consensus 715 ~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 715 RDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 6779999999999999999998753 34443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-21 Score=190.52 Aligned_cols=452 Identities=13% Similarity=0.086 Sum_probs=351.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCC-cchHH--HHHHHHHhCC
Q 006672 32 THIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN-LHIFN--VLIRGLAENS 108 (636)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~--~li~~~~~~g 108 (636)
..+...|...-+......+..+..+.....+ ....|..-.-+.|++.+|.+--...-..| ..+=+ .+-..+.+..
T Consensus 19 ~~~~~~ld~~~~s~~s~~v~qq~~~t~~~~~--~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~ 96 (966)
T KOG4626|consen 19 EAFSRKLDQSVSSSGSSSVLQQFNKTHEGSD--DRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGS 96 (966)
T ss_pred HHHHHHhccCcccccchHHHHHhccCCccch--hHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhccc
Confidence 3344444433333333444444443322212 13455556667889988888665443222 12212 2223445555
Q ss_pred CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 006672 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 188 (636)
+.+.....-....+. ...-..+|+.+...+-..|+++.|...++.+++.. +..+..|..+..++...|+.+.|...|.
T Consensus 97 r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 97 RLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred chhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 555443332222221 22245789999999999999999999999999864 3356788899999999999999999998
Q ss_pred hCCCCCCCCChh-hHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---h
Q 006672 189 ETPEKNKSESVL-LWNVLINGCSKIGYLRKAVELFGMMPKKN---VASWVSLIDGFMRKGDLKKAGELFEQMPEKG---V 261 (636)
Q Consensus 189 ~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~ 261 (636)
+..+. .|+.. ..+.+...+-..|+.++|...|.+..+.+ ...|+.|...+...|++-.|+.-|++...-| .
T Consensus 175 ~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 175 EALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred HHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 88755 34433 34445556667899999999888777433 3589999999999999999999999988655 5
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
..|-.|...|...+.+++|+..|.+.... .| ....+..+...|-..|.++.|+..+++.++.. |.-+..|+.|..+
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanA 329 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANA 329 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHH
Confidence 68999999999999999999999988864 45 45677788888889999999999999998765 5567899999999
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
+-..|++.+|.+.+.+... ....+.+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~A 407 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDA 407 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHH
Confidence 9999999999999998875 3566889999999999999999999999998 8888 56899999999999999999
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
...+++..+ +.|+ ...|+.++..|...|+.+.|...+.++ +.++|.-..++..|+.+|..+|+..+|+.-++
T Consensus 408 i~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rA----I~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 408 IMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRA----IQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHH----HhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999885 8888 779999999999999999999998855 47899989999999999999999999999999
Q ss_pred HHHhCC
Q 006672 496 LMQRRS 501 (636)
Q Consensus 496 ~m~~~g 501 (636)
...+..
T Consensus 481 ~aLklk 486 (966)
T KOG4626|consen 481 TALKLK 486 (966)
T ss_pred HHHccC
Confidence 998743
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.89 E-value=1.8e-18 Score=191.89 Aligned_cols=226 Identities=13% Similarity=0.111 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+..++.. +++++|+..|.+.... .|+......+..++...|++++|...++.+... +|+...+..+...+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 345555555554 6777788777766654 355544444445556788888888888877544 34444556677778
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHH---HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAM---IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
.+.|+.++|...|++..+.++..++.. .......|++++|+..+++..+ ..|+...+..+..++.+.|++++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887776433333332 2333345899999999999888 66777788888888899999999999
Q ss_pred HHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 419 ~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.+++..+ ..| +...+..+..++...|++++|++.++++. +++|.++..+..++.+|...|++++|...+++.
T Consensus 631 ~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL----~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 631 DLRAALE---LEPNNSNYQAALGYALWDSGDIAQSREMLERAH----KGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998875 344 46788888888999999999999887554 678999999999999999999999999999999
Q ss_pred HhCC
Q 006672 498 QRRS 501 (636)
Q Consensus 498 ~~~g 501 (636)
.+..
T Consensus 704 l~l~ 707 (987)
T PRK09782 704 IDDI 707 (987)
T ss_pred HhcC
Confidence 8743
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1e-18 Score=190.54 Aligned_cols=389 Identities=10% Similarity=0.015 Sum_probs=273.4
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 006672 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ 176 (636)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 176 (636)
+......+.+.|++++|+..|++..+ +.|+...|..+..++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 33455566677777777777777665 44666666666667777777777777777777653 3345566667777777
Q ss_pred cCChHHHHHHHhhCCCCCC-----------------------------CCChhhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 177 LGKTRGAFKVFDETPEKNK-----------------------------SESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~-----------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (636)
.|++++|..-|......+- +++..++..+.. |......+.+..-+....+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGN-YLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHH-HHHHccCCcchhhhhcccc
Confidence 7777777665544332210 111111111111 1111111111111111111
Q ss_pred CChH---HHHHHHHHH---HhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006672 228 KNVA---SWVSLIDGF---MRKGDLKKAGELFEQMPEK------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (636)
Q Consensus 228 ~~~~---~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 295 (636)
.+.. .+..+...+ ...+++++|.+.|+...+. ....|+.+...+...|++++|+..|++..+.. +-+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~ 364 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRV 364 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCc
Confidence 1111 111111111 2246789999999987642 25678889999999999999999999998753 223
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 5678888888999999999999999998775 56788999999999999999999999998875 3566788899999
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-h-------HHHHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-K-------HHTVVVNLL 443 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~-------~~~~l~~~~ 443 (636)
.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|++..+ +.|+. . .++.....+
T Consensus 444 ~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHH
Confidence 999999999999999988 5566 56888888999999999999999999875 33321 1 122222334
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
...|++++|.++++++. +++|++...+..++.+|.+.|++++|.+.+++..+.
T Consensus 519 ~~~~~~~eA~~~~~kAl----~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 519 QWKQDFIEAENLCEKAL----IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHhhhHHHHHHHHHHHH----hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45799999999988554 678999999999999999999999999999998774
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=7.9e-20 Score=189.13 Aligned_cols=302 Identities=15% Similarity=0.161 Sum_probs=201.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
...+...|++++|...|+++.+.+ +.+..++..+...+.+.|++++|+.+++.+.......-
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------------- 103 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR----------------- 103 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-----------------
Confidence 344567778888888888777654 44556677777777777777777777666543110000
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
......+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|.+.++.+.+.+..+.
T Consensus 104 -------~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 104 -------EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred -------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 0001234444555555555555555555554431 23344455555555555555555555555544331111
Q ss_pred ----hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHH
Q 006672 331 ----GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFL 401 (636)
Q Consensus 331 ----~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~ 401 (636)
...+..+...+.+.|++++|...|+++.+ .+...+..+...|.+.|++++|+++|+++.+. .|+ ..++.
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 253 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--DPEYLSEVLP 253 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--ChhhHHHHHH
Confidence 12345566677778888888888887664 24557778888899999999999999999874 344 45678
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
.+..+|...|++++|.+.++++.+ ..|+...+..++..+.+.|++++|.++++++. +..|++. .+..+...+
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l----~~~P~~~-~~~~l~~~~ 325 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQL----RRHPSLR-GFHRLLDYH 325 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHH----HhCcCHH-HHHHHHHHh
Confidence 888899999999999999999885 35777777889999999999999999998665 4478654 565556555
Q ss_pred HH---cCChhHHHHHHHHHHhCCCccCCee
Q 006672 482 AA---EGRWKDVARVRTLMQRRSIKKDPGW 508 (636)
Q Consensus 482 ~~---~g~~~~A~~~~~~m~~~g~~~~~~~ 508 (636)
.. .|+.+++..++++|.+++++++|.+
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 53 5689999999999999999999853
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=1.8e-19 Score=186.49 Aligned_cols=297 Identities=13% Similarity=0.123 Sum_probs=222.1
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCC---hhhHHHHHHHHHhc
Q 006672 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSES---VLLWNVLINGCSKI 212 (636)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 212 (636)
...+...|+++.|...|..+++.+ +.+..++..+...|.+.|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~- 119 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK- 119 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH-
Confidence 334567899999999999999874 44567899999999999999999999999876431111 1234444444444
Q ss_pred CChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 213 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
.|++++|..+|+++.+ .+..+++.++..|.+.|++++|.+.++.+.+
T Consensus 120 ------------------------------~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (389)
T PRK11788 120 ------------------------------AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEK 169 (389)
T ss_pred ------------------------------CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 4555555555555443 2355677777777777777777777777776
Q ss_pred CCCCCCH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC--
Q 006672 290 AGVRAND----FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-- 361 (636)
Q Consensus 290 ~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-- 361 (636)
.+..+.. ..+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|+++.+ |+
T Consensus 170 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 170 LGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred hcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 5432221 133455556677788888888888777654 44566777788888888888888888888774 33
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
..+++.++.+|...|+.++|...++++.+ ..|+...+..+...+...|++++|..+++++.+ ..|+...+..++.
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~---~~P~~~~~~~l~~ 323 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALE--EYPGADLLLALAQLLEEQEGPEAAQALLREQLR---RHPSLRGFHRLLD 323 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHH---hCcCHHHHHHHHH
Confidence 34678889999999999999999999988 567777778888999999999999999998875 3688888888887
Q ss_pred HHHh---cCCchHHHHHHHHHHHHHhccCCCC
Q 006672 442 LLSR---VGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 442 ~~~~---~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
.+.. .|+.++|..+++++.++.++.+|.+
T Consensus 324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 7664 5689999999999999999888863
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=5e-17 Score=180.58 Aligned_cols=439 Identities=10% Similarity=0.011 Sum_probs=294.8
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHH
Q 006672 42 NSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFV 118 (636)
Q Consensus 42 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (636)
+++++|...+.++++.... ++.++..|...|...|+.++|+..+++... .|...+..+ ..+ +++.+|..+|+
T Consensus 58 Gd~~~A~~~l~~Al~~dP~-n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~~ye 132 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPD-NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVTTVE 132 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHHHHH
Confidence 6799999999999988644 478889999999999999999999987653 334444443 333 88899999999
Q ss_pred HhHHCCCCCCcccHHHHHHHH------HccCChHHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhcCChHHHHHHHhhCC
Q 006672 119 FMLRLSVRPNRLTYPFVSKSV------ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHL-ADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 119 ~m~~~g~~p~~~t~~~ll~~~------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~ 191 (636)
++.+. .|+..-...++... ....+.+++.+.++ .......|+..+.... ...|.+.|++++|++.+.++.
T Consensus 133 ~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 133 ELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 99884 45543333222221 12233466666665 3333334445544444 788888888888888888888
Q ss_pred CCCCCCChhhHHHHHHHHHh-cCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Chh---
Q 006672 192 EKNKSESVLLWNVLINGCSK-IGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-----GVV--- 262 (636)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~--- 262 (636)
+.+ +.+..-+..|..+|.+ .++ +++..+++...+.|+..+..+.+.|.+.|+.++|.+++++++.. +..
T Consensus 210 k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~ 287 (987)
T PRK09782 210 QQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL 287 (987)
T ss_pred hcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence 776 5555556667777777 366 77777777655567778888888888888888888887776521 000
Q ss_pred --------------------------------------------------------------------------------
Q 006672 263 -------------------------------------------------------------------------------- 262 (636)
Q Consensus 263 -------------------------------------------------------------------------------- 262 (636)
T Consensus 288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 367 (987)
T PRK09782 288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL 367 (987)
T ss_pred HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence
Q ss_pred ----------hHHHHHHHHHhCCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhc---------------------
Q 006672 263 ----------SWTAMINGFSQNGEAEKALAMFFQMLDA-G-VRANDFTVVSALSACAKV--------------------- 309 (636)
Q Consensus 263 ----------~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~p~~~t~~~ll~~~~~~--------------------- 309 (636)
..-.+.-...+.|+.++|..+|+..... + ..++......++..+...
T Consensus 368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 447 (987)
T PRK09782 368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ 447 (987)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence 0000011123456666666666665441 0 111111222233333222
Q ss_pred ------------------------------------------CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 310 ------------------------------------------GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 310 ------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
++.++|...+....... |+......+...+...|++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ 525 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDY 525 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCH
Confidence 33444555444444332 3332333344445678888
Q ss_pred HHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 348 EAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 348 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
++|...|+++.. ++...+..+...+.+.|+.++|...+++.++. .|+.. .+..+.......|++++|...+++..
T Consensus 526 eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL 603 (987)
T PRK09782 526 ATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL 603 (987)
T ss_pred HHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 888888887654 34445667777788888888888888888874 35533 33334445556699999999999887
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+ +.|+...|..+..++.+.|++++|++.++++ ++++|+++..+..++.++...|++++|+..+++..+..
T Consensus 604 ~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~A----L~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 604 N---IAPSANAYVARATIYRQRHNVPAAVSDLRAA----LELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred H---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5 5677889999999999999999999998854 47799999999999999999999999999999998853
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.1e-17 Score=181.22 Aligned_cols=404 Identities=10% Similarity=0.041 Sum_probs=242.1
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSK 137 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 137 (636)
++....-.+......|+.++|++++.+..+ .+...+..+...+...|++++|+.+|++..+. .|+ ...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 444444555566667777777777765542 23334666777777777777777777776653 343 333444555
Q ss_pred HHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHH
Q 006672 138 SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217 (636)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 217 (636)
.+...|++++|...++.+++.. +.+.. +..+..++...|+.++|...++++.+.. +.+...+..+...+...|..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 5666777777777777776652 33444 6666666667777777777777666554 4455555556666666666666
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHH-----HhCCCh---HHHHHHHHHHHH
Q 006672 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGF-----SQNGEA---EKALAMFFQMLD 289 (636)
Q Consensus 218 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~ 289 (636)
|++.++.... ++.....+ .. .....++..+ ...+++ ++|++.++.+.+
T Consensus 169 Al~~l~~~~~-~p~~~~~l--------~~---------------~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDL--------EA---------------DAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred HHHHHHhCCC-CHHHHHHH--------HH---------------HHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 6666665553 21100000 00 0001111111 111223 566666666664
Q ss_pred C-CCCCCHH-HHH----HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC--
Q 006672 290 A-GVRANDF-TVV----SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-- 361 (636)
Q Consensus 290 ~-g~~p~~~-t~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-- 361 (636)
. ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+........+...|...|++++|...|+++...+
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 3 1122211 111 1123344556777777777777665421111122224566777777777777777665421
Q ss_pred -----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-----------CCCCH---HHHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 362 -----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-----------TEPDG---TVFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 362 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
...+..+..++...|++++|+++++++.... -.|+. ..+..+...+...|+.++|++.+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1234445556777788888888887777631 11232 2344556677788888888888888
Q ss_pred hHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 423 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.. ..+.+...+..++.++...|++++|++.++++ ++++|+++..+..++..+...|+|++|..+++++.+.
T Consensus 385 al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~a----l~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 385 LAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKA----EVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 875 23445778888888888888888888888744 4668888888888888888888888888888888774
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=4.1e-17 Score=177.36 Aligned_cols=347 Identities=11% Similarity=-0.004 Sum_probs=186.2
Q ss_pred hcCCChHHHHHHhccCCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHH
Q 006672 74 SLHKSIDYALSIFDHFTPK------NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSL 147 (636)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 147 (636)
.+..+++.---.|...++. +..-.-.++..+.+.|++.+|+.+++........+ ...+..+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence 3556666666666555421 22223345556666777777777777766643222 2233333344555677777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-
Q 006672 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP- 226 (636)
Q Consensus 148 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 226 (636)
|.+.++.+++.. +.+...+..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...++++.
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 777777766653 3344556666666666677777766666665443 4445555556666666666666655554432
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006672 227 -KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (636)
Q Consensus 227 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 305 (636)
.|+. ...+..+ ..+...|++++|...++.+.+....++......+..+
T Consensus 173 ~~P~~------------------------------~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~ 221 (656)
T PRK15174 173 EVPPR------------------------------GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT 221 (656)
T ss_pred hCCCC------------------------------HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence 1111 1122122 1244455555555555555443222223333333444
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHH----HHHHHhhccC---CChhcHHHHHHHHHHcCCh
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA----ASLVFGETKE---KDLLTWTAMIWGLAIHGRY 378 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 378 (636)
+...|++++|...+..+.+.. +.+...+..+..+|...|++++ |...|++... .+...+..+...+...|++
T Consensus 222 l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 300 (656)
T PRK15174 222 LCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQN 300 (656)
T ss_pred HHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Confidence 555555555555555555443 3345555555566666666553 5555555443 2344566666666666666
Q ss_pred HHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCchHHHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDSQGYQNS 456 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~ 456 (636)
++|+..+++..+ ..|+ ...+..+..++...|++++|...++.+.. ..|+. ..+..+..++...|+.++|.+.+
T Consensus 301 ~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 301 EKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQYTAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666666666665 3444 33444555566666666666666666653 23332 22333455566666666666666
Q ss_pred HHHH
Q 006672 457 QNSF 460 (636)
Q Consensus 457 ~~~~ 460 (636)
+++.
T Consensus 376 ~~al 379 (656)
T PRK15174 376 EHYI 379 (656)
T ss_pred HHHH
Confidence 6443
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=1.6e-17 Score=180.58 Aligned_cols=319 Identities=9% Similarity=-0.004 Sum_probs=239.1
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~ 247 (636)
+..+.+.|++++|+.+++...... +.+...+..++.+....|++++|++.|+++.. .+...+..+...+.+.|+++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~ 127 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYA 127 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Confidence 334445555555555555554433 33344444444555556666666666655542 23445666666677777777
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006672 248 KAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324 (636)
Q Consensus 248 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (636)
+|...|++... .+...|..++..+...|++++|...++++...... +...+..+ ..+...|++++|...+..+.+
T Consensus 128 ~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~ 205 (656)
T PRK15174 128 TVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLP 205 (656)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHh
Confidence 77777776653 34678888999999999999999999988765322 23333333 347788999999999999887
Q ss_pred cCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHH----HHHHHHHHhHcCCCCC-
Q 006672 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQ----AIQYFKKMMYSGTEPD- 396 (636)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~- 396 (636)
....++......+...+.+.|+.++|...|++... .+...+..+...|...|++++ |+..|++..+ ..|+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~ 283 (656)
T PRK15174 206 FFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDN 283 (656)
T ss_pred cCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCC
Confidence 65334455556667889999999999999998775 456788889999999999986 8999999998 6677
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
...+..+...+...|++++|...+++..+ ..|+ ...+..+..+|.+.|++++|.+.++++. +.+|.++..+.
T Consensus 284 ~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al----~~~P~~~~~~~ 356 (656)
T PRK15174 284 VRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLA----REKGVTSKWNR 356 (656)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCccchHHHH
Confidence 55888889999999999999999999985 3444 6678889999999999999999998655 56888777777
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.++.++...|++++|...+++..+..
T Consensus 357 ~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 357 YAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 78899999999999999999987754
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.83 E-value=1.8e-16 Score=172.86 Aligned_cols=243 Identities=14% Similarity=0.000 Sum_probs=200.4
Q ss_pred cCChHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC--C-hhhHHHHHHHHHhCCChHHHHH
Q 006672 212 IGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKGDLKKAGELFEQMPEK--G-VVSWTAMINGFSQNGEAEKALA 282 (636)
Q Consensus 212 ~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~ 282 (636)
.+++++|++.|+..... +...++.+...+...|++++|...|++..+. + ..+|..+...+...|++++|+.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 47899999999887742 3457888889999999999999999987643 3 5688889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---
Q 006672 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--- 359 (636)
Q Consensus 283 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 359 (636)
.|++..+.. +.+...+..+...+...|++++|...++..++.. +.+...+..+..++.+.|++++|...|++...
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 999998763 4467788888999999999999999999999875 56778888899999999999999999998765
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH-HH-------HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TV-------FLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t-------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
.+...|+.+...+...|++++|++.|++..+ +.|+. .+ ++..+..+...|++++|.+++++..+ +.|
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~---l~p 539 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIE--LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI---IDP 539 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCC
Confidence 4577899999999999999999999999988 44431 11 11122233446999999999999875 345
Q ss_pred C-hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 432 S-VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 432 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
+ ...+..++.++.+.|++++|.+.|+++.+
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4 45788999999999999999999997653
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=1.2e-16 Score=177.55 Aligned_cols=407 Identities=10% Similarity=0.015 Sum_probs=272.9
Q ss_pred CCCCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccC---CCCCcchHHHHH
Q 006672 25 PSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHF---TPKNLHIFNVLI 101 (636)
Q Consensus 25 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li 101 (636)
+.++.-...++.+..-.++.++|.+++....... +.+..++..+...+.+.|++++|..+|++. .+.+...+..+.
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la 90 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLI 90 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3444445567788888888999999999988632 345567889999999999999999999984 456777888899
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChH
Q 006672 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTR 181 (636)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 181 (636)
..+...|++++|+..+++..+. .|+...+..+..++...|+.++|...++.+++.. +.+...+..+..++...|..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChH
Confidence 9999999999999999999875 4544337777778889999999999999999975 445666677888899999999
Q ss_pred HHHHHHhhCCCCCCCCCh------hhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH---HHHHHH
Q 006672 182 GAFKVFDETPEKNKSESV------LLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL---KKAGEL 252 (636)
Q Consensus 182 ~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~---~~A~~~ 252 (636)
.|++.++.... .|+. .....++......+ ....+++ ++|+..
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~--------------------------~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT--------------------------RSEKERYAIADRALAQ 218 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc--------------------------cChhHHHHHHHHHHHH
Confidence 99999998774 2221 01111111111100 0111112 334444
Q ss_pred HhhCCC-----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 006672 253 FEQMPE-----KGV-----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-ANDFTVVSALSACAKVGALEAGVRVHNY 321 (636)
Q Consensus 253 ~~~~~~-----~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 321 (636)
++.+.+ |+. ......+..+...|++++|+..|+++.+.+.+ |+. ....+..++...|++++|...++.
T Consensus 219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence 443331 111 01111122334556666666666666655421 222 112234556666666777666666
Q ss_pred HHHcCCCC---chhHHHHHhhHHhhcCCHHHHHHHHhhccCC---------------C---hhcHHHHHHHHHHcCChHH
Q 006672 322 ISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGETKEK---------------D---LLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 322 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------------~---~~~~~~li~~~~~~g~~~~ 380 (636)
+.+..... .......|..++...|++++|.++++.+.+. + ...+..+...+...|+.++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 65432111 1233444555566667777777776665542 1 1234566777888899999
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQN 458 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (636)
|++.++++.. ..|+ ...+..+...+...|++++|++.+++... +.|+ ...+..++..+.+.|++++|+.++++
T Consensus 378 A~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~---l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ 452 (765)
T PRK10049 378 AEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEV---LEPRNINLEVEQAWTALDLQEWRQMDVLTDD 452 (765)
T ss_pred HHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999887 4565 55777788888899999999999998875 4455 66777777888899999999998885
Q ss_pred HHHHHhccCCCCchhH
Q 006672 459 SFTKLLQLKPKHPSSY 474 (636)
Q Consensus 459 ~~~~~~~l~p~~~~~~ 474 (636)
+. +..|+++.+.
T Consensus 453 ll----~~~Pd~~~~~ 464 (765)
T PRK10049 453 VV----AREPQDPGVQ 464 (765)
T ss_pred HH----HhCCCCHHHH
Confidence 54 5688776543
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.80 E-value=7.3e-15 Score=160.18 Aligned_cols=417 Identities=11% Similarity=0.020 Sum_probs=301.8
Q ss_pred HhhcCCChHHHHHHhccCCCCCcc---hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHH---HHHHHccCCh
Q 006672 72 SASLHKSIDYALSIFDHFTPKNLH---IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFV---SKSVASLSLL 145 (636)
Q Consensus 72 ~~~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~ 145 (636)
...+.|+++.|+..|++....++. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 457789999999998877633222 23377888888899999999888877 3444433333 3456677899
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (636)
Q Consensus 146 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (636)
+.|.++++.+++.. +.++.++..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999998875 334667777888888999999999999988755 344444433433444456666688888888
Q ss_pred CC---CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhH--HHHHHHHH---------hCCC---hHHHHHHHH
Q 006672 226 PK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSW--TAMINGFS---------QNGE---AEKALAMFF 285 (636)
Q Consensus 226 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~li~~~~---------~~g~---~~~A~~l~~ 285 (636)
.+ .+...+..+...+.+.|-...|.++..+-+.. ...-| ...+.-.+ ...+ .+.|+.-++
T Consensus 196 l~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~ 275 (822)
T PRK14574 196 VRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQ 275 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHH
Confidence 73 35667788888888899888888888776521 00000 00011111 1122 344555555
Q ss_pred HHHH-CCCCCCH-H----HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC
Q 006672 286 QMLD-AGVRAND-F----TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 286 ~m~~-~g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (636)
.+.. .+-.|.. . ...--+-++...++..++++.++.+...+.+....+-.++.++|...++.++|..+|..+..
T Consensus 276 ~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~ 355 (822)
T PRK14574 276 NLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYY 355 (822)
T ss_pred HHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 5554 1222322 2 22345567788899999999999999888776677889999999999999999999998754
Q ss_pred C---------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-----------CCC--HH-HHHHHHHHHHhcCcHHHH
Q 006672 360 K---------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-----------EPD--GT-VFLAILTACWYSGQVKLA 416 (636)
Q Consensus 360 ~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~~-t~~~ll~a~~~~g~~~~a 416 (636)
+ +......|.-+|...+++++|..+++++.+... .|| -. .+..++..+...|++.+|
T Consensus 356 ~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~A 435 (822)
T PRK14574 356 SDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTA 435 (822)
T ss_pred ccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHH
Confidence 2 222346788999999999999999999987311 133 22 344556778899999999
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
++.++.+.. .-+-+......+.+++...|+..+|++.++.+ ..++|++..+...++..+...|+|++|..+.+.
T Consensus 436 e~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a----~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~ 509 (822)
T PRK14574 436 QKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAV----ESLAPRSLILERAQAETAMALQEWHQMELLTDD 509 (822)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----hhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 999999975 34557889999999999999999999999643 356999999999999999999999999999988
Q ss_pred HHhCC
Q 006672 497 MQRRS 501 (636)
Q Consensus 497 m~~~g 501 (636)
..+..
T Consensus 510 l~~~~ 514 (822)
T PRK14574 510 VISRS 514 (822)
T ss_pred HHhhC
Confidence 87743
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=2.1e-15 Score=157.08 Aligned_cols=443 Identities=14% Similarity=0.093 Sum_probs=317.0
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCC------cchHHHHHHHHHhCCCchHHHHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN------LHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
...|.+++....+.. .-+|.+.+.|.+.|.-.|+++.+..+...+...+ ..+|--+.++|-..|++++|...|
T Consensus 252 ~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY 330 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYY 330 (1018)
T ss_pred HHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 566666666666543 3477788888888888888888888776554222 235777888888888888888888
Q ss_pred HHhHHCCCCCCcccHHH--HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC----ChHHHHHHHhhCC
Q 006672 118 VFMLRLSVRPNRLTYPF--VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG----KTRGAFKVFDETP 191 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 191 (636)
.+..+ ..||.+.++. +...+...|+++.+...|+.+.+.. +.+..+...|...|+..+ ..+.|..+..+..
T Consensus 331 ~~s~k--~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 331 MESLK--ADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHc--cCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 77665 3466554443 5567788888888888888888763 555666677777777665 5667777776666
Q ss_pred CCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC--------CCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 006672 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM--------PKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---- 259 (636)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---- 259 (636)
+.- +.|...|-.+...+-+..-+.. +.+|... ...-+...|.+...+...|+++.|...|+.....
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 444 5577777777777655544332 4444333 2456678888888888899999888888876432
Q ss_pred ---Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 006672 260 ---GV------VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 260 ---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (636)
|. .+--.+...+-..++.+.|.+.|...... .|.-. .|..++......+...+|...+..+.... ..
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 21 12333566667778888888998888875 34433 33334323334567888888888887644 56
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHc------------CChHHHHHHHHHHhHcC
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIH------------GRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~------------g~~~~A~~~~~~m~~~g 392 (636)
++.+++.+.+.|.+...+.-|.+-|..+.. +|+.+.-+|.+.|.+. +..++|+++|.+.++
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~-- 640 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR-- 640 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--
Confidence 777778788888888888888886655543 3555555566654432 457889999999988
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 393 TEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 393 ~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
..| |...-+.+.-.++..|++.+|..+|.++++. ......+|-.+..+|..+|++-.|+++|+...++.. ..+++
T Consensus 641 ~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~--~~~~~ 716 (1018)
T KOG2002|consen 641 NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY--KKNRS 716 (1018)
T ss_pred cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCH
Confidence 444 3456677777888999999999999999862 234567888999999999999999999998887754 34577
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+...|+.++.+.|+|.+|.+.........
T Consensus 717 ~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 717 EVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 889999999999999999999998887754
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=3.6e-14 Score=154.81 Aligned_cols=419 Identities=9% Similarity=0.019 Sum_probs=314.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHH---HHHHHhCCCchHHHHHH
Q 006672 41 SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVL---IRGLAENSHFQSCISHF 117 (636)
Q Consensus 41 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~ 117 (636)
-|+...|...+.++++......+.++ .++..+...|+.++|+..+++...|+...+..+ ...+...|++++|+++|
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45589999999999987533223444 888999999999999999998886644444433 34677789999999999
Q ss_pred HHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCC
Q 006672 118 VFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS 196 (636)
Q Consensus 118 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 196 (636)
+++.+. .|+ ...+..++..+...++.++|.+.++.+.+. .|+...+..++..+...++..+|++.++++.+.. +
T Consensus 126 ~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P 200 (822)
T PRK14574 126 QSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-P 200 (822)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-C
Confidence 999985 454 455556677788999999999999999876 4555556555555555677767999999999886 6
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChH------HHHHHHHHH---H--hcCC---HHHHHHHHhhCCC-
Q 006672 197 ESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVA------SWVSLIDGF---M--RKGD---LKKAGELFEQMPE- 258 (636)
Q Consensus 197 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~------~~~~li~~~---~--~~g~---~~~A~~~~~~~~~- 258 (636)
.+...+..+..++.+.|-...|+++..+-.. +... ....++..- . ...+ .+.|+.-++.+..
T Consensus 201 ~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~ 280 (822)
T PRK14574 201 TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTR 280 (822)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhh
Confidence 6788889999999999999999999887652 1110 011111100 0 1112 3444444444432
Q ss_pred ----CCh-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC---
Q 006672 259 ----KGV-----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND--- 326 (636)
Q Consensus 259 ----~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 326 (636)
|.. ...--.+-++...|+..++++.|+.|...|.+....+-..+..+|...+++++|..++..+....
T Consensus 281 ~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 281 WGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKT 360 (822)
T ss_pred ccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccc
Confidence 211 12234567888999999999999999998876566688899999999999999999999997643
Q ss_pred --CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh------------------hcHHHHHHHHHHcCChHHHHHHHH
Q 006672 327 --FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL------------------LTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 327 --~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------------~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
.+++......|.-+|...+++++|..+++.+.+..+ .....++..+...|+..+|++.++
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 233444467889999999999999999998876111 123456777888999999999999
Q ss_pred HHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
++.. ..|. ......+...+...|.+.+|++.++.... +.|+ .......+..+...|++++|..+.+ .++
T Consensus 441 ~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~---l~P~~~~~~~~~~~~al~l~e~~~A~~~~~----~l~ 511 (822)
T PRK14574 441 DLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVES---LAPRSLILERAQAETAMALQEWHQMELLTD----DVI 511 (822)
T ss_pred HHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh---hCCccHHHHHHHHHHHHhhhhHHHHHHHHH----HHH
Confidence 9988 5565 66888888999999999999999977764 4554 6677788888999999999999887 455
Q ss_pred ccCCCCchhH
Q 006672 465 QLKPKHPSSY 474 (636)
Q Consensus 465 ~l~p~~~~~~ 474 (636)
+..|+++.+-
T Consensus 512 ~~~Pe~~~~~ 521 (822)
T PRK14574 512 SRSPEDIPSQ 521 (822)
T ss_pred hhCCCchhHH
Confidence 7789887443
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=2.6e-14 Score=149.14 Aligned_cols=407 Identities=12% Similarity=0.069 Sum_probs=284.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC-C-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHH
Q 006672 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVR-P-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV 168 (636)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 168 (636)
+.|++..|.|.+.|...|++..++.+...+...... + -..+|-.+.+++-..|+++.|...|-+..+.....-+..+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 456777777777777788888888887777653211 0 12335556677777888888888887776653222233445
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC----ChHHHHHHHhhCCCC---ChHHHHHHHHHHH
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG----YLRKAVELFGMMPKK---NVASWVSLIDGFM 241 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~---~~~~~~~li~~~~ 241 (636)
-|..+|.+.|+++.+...|+.+.... +.+..+...|...|+..+ ..++|..++.+...+ |...|-.+..+|-
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e 425 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE 425 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 57788888888888888888777654 556667777777776664 456677776666643 4556666666665
Q ss_pred hcCC------HHHHHHHHhh-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCCCCH------HHHHHHHHH
Q 006672 242 RKGD------LKKAGELFEQ-MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA---GVRAND------FTVVSALSA 305 (636)
Q Consensus 242 ~~g~------~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~------~t~~~ll~~ 305 (636)
...- +..|..++.. +....+...|.+...+...|++++|...|...... ...+|. .+--.+...
T Consensus 426 ~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 426 QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 4433 2333333332 22345678899999999999999999999888654 122232 223334555
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
.-..++.+.|.++|..+++.. |.-+..|-.|+.+.-..++..+|...+..+.. .++..|+.+...|.....+..|.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~ 584 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK 584 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc
Confidence 567789999999999998764 44455555555455556778889988888775 57778888888998888888888
Q ss_pred HHHHHHhHc-CCCCCHHHHHHHHHHHHh------------cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 383 QYFKKMMYS-GTEPDGTVFLAILTACWY------------SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 383 ~~~~~m~~~-g~~p~~~t~~~ll~a~~~------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
+-|+...+. ...+|..+..+|.+.|.. .+..++|+++|.++.+ .-+.+...-+.++-.++..|++
T Consensus 585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~ 662 (1018)
T KOG2002|consen 585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRF 662 (1018)
T ss_pred cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCc
Confidence 877766553 233677777677665542 2457888888888874 2345677778899999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccC
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKD 505 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~ 505 (636)
.+|.++|.+..+... +++.+|..++.+|...|+|..|+++|+...+.-.+++
T Consensus 663 ~~A~dIFsqVrEa~~----~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~ 714 (1018)
T KOG2002|consen 663 SEARDIFSQVREATS----DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKN 714 (1018)
T ss_pred hHHHHHHHHHHHHHh----hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999998887643 3667999999999999999999999998877655433
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.4e-13 Score=130.98 Aligned_cols=294 Identities=14% Similarity=0.137 Sum_probs=226.7
Q ss_pred CHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhh--cCCCh-------------------------HHH
Q 006672 30 TETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSAS--LHKSI-------------------------DYA 82 (636)
Q Consensus 30 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~--~~g~~-------------------------~~A 82 (636)
+...++.++. .+.+..+.-++++|...|.+.++.+--.|...-+ ...++ +-|
T Consensus 118 ~E~nL~kmIS-~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKMIS-SREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHHHh-hcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 3344444442 3448889999999999998888877666665422 11111 112
Q ss_pred HHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCC
Q 006672 83 LSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY 162 (636)
Q Consensus 83 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 162 (636)
. ++-+..++...++..||.++++--..+.|.++|++-.....+.+..+||.+|.+-+- ..++.+..+|+.....|
T Consensus 197 d-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 197 D-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTP 271 (625)
T ss_pred H-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCC
Confidence 2 333344567789999999999999999999999999988888999999999987653 34488999999999999
Q ss_pred ChhHHHHHHHHHHhcCChHHHH----HHHhhCCCCCCCCChhhHHHHHHHHHhcCChHH-HHHHHhhCC-----------
Q 006672 163 DAFVRVHLADMYVQLGKTRGAF----KVFDETPEKNKSESVLLWNVLINGCSKIGYLRK-AVELFGMMP----------- 226 (636)
Q Consensus 163 ~~~~~~~li~~~~~~g~~~~A~----~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~----------- 226 (636)
|.+|+|+++....+.|+++.|+ +++.+|++.|+.|...+|..+|..+.+.++..+ |..++.++.
T Consensus 272 nl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~ 351 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPI 351 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCC
Confidence 9999999999999999887665 567889999999999999999999999998755 444444443
Q ss_pred -CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006672 227 -KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 227 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 294 (636)
..|...+...+..+.+..+.+-|..+-.-....+ ..-|..+....++....+.-+.+|..|.-.-.-|
T Consensus 352 ~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p 431 (625)
T KOG4422|consen 352 TPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP 431 (625)
T ss_pred CCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC
Confidence 2345567777788888888888888766554321 2346667778888888899999999998877788
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (636)
+..+...++++....+.++-..+++..++..|...
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~ 466 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF 466 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh
Confidence 88999999999888888988888888887766433
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.8e-11 Score=122.64 Aligned_cols=455 Identities=12% Similarity=0.068 Sum_probs=340.0
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
.+.|+-++.+..+.= +.+. -|.-+|++..-++.|..+++... +.+...|-+-...=-.+|+.+....+..+-
T Consensus 392 ~~darilL~rAvecc-p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 392 PEDARILLERAVECC-PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred hHHHHHHHHHHHHhc-cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455666666666541 1122 34445667777888888887544 668888877766667789888888887653
Q ss_pred ----HHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006672 121 ----LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD--AFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194 (636)
Q Consensus 121 ----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 194 (636)
...|+..+...|-.=..+|-..|..-.+..+....+..|++.. -.+|+.-...|.+.+.++-|+.+|....+--
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf 546 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF 546 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc
Confidence 4578888999998888889999999999999998888887543 4588888899999999999999998776544
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHH
Q 006672 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMI 268 (636)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li 268 (636)
+.+...|......--..|..++...+|++... .....|-....-+-..|++..|..++.+.-+. +...|-+-+
T Consensus 547 -p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaav 625 (913)
T KOG0495|consen 547 -PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAV 625 (913)
T ss_pred -cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 56778888888887888999999999988873 34456666777788889999999988876532 456788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
..-..+..+++|..+|.+.... .|+...|.--++.---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++
T Consensus 626 Kle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 626 KLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHH
Confidence 8889999999999999988764 566666666556566678899999999988865 3666778888999999999999
Q ss_pred HHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 349 AASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 349 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.|.+.|..-.+ | .+..|-.+...--+.|+.-+|..++++.+-.+.+ |...|...+..-.+.|+.+.|..+..+..+
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999987765 4 3457888887777888999999999998874322 466888888988999999999988887775
Q ss_pred hcCCCCChhHHHHH------------------------------HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 426 DYFIEPSVKHHTVV------------------------------VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 426 ~~~~~p~~~~~~~l------------------------------~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+. +.+...|.-- ..++-...+++.|.+.|+ +.++.+|++..+|.
T Consensus 782 ec--p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~----Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 782 EC--PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFE----RAVKKDPDNGDAWA 855 (913)
T ss_pred hC--CccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHH----HHHccCCccchHHH
Confidence 32 2333333333 333344444555555555 34467888888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCE
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGH 516 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~ 516 (636)
-+...+.+.|.-++-.+++.+... ..|..|..|..+.+.
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhh
Confidence 888888888887777788777766 345556666554443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.64 E-value=3.3e-11 Score=125.59 Aligned_cols=492 Identities=13% Similarity=0.068 Sum_probs=313.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhc---cCCCCCcchHHHHHHHHHhCCCc
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD---HFTPKNLHIFNVLIRGLAENSHF 110 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~~~~~~g~~ 110 (636)
.+..+.+-|++++|..++.++++.. +.....|..|...|-..|+.+++...+= .+.+.|...|-.+..-..+.|++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH
Confidence 4555666688999999999999985 3477889999999999999999998663 45577889999999999999999
Q ss_pred hHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHH----HHHHHHHhcCChHHHHH
Q 006672 111 QSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV----HLADMYVQLGKTRGAFK 185 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~----~li~~~~~~g~~~~A~~ 185 (636)
.+|.-.|.+..+. .|+. ..+--=...|-+.|+...|..-|.++.....+.|..-.- ..+..|...++-+.|.+
T Consensus 224 ~qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 224 NQARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999884 3444 222233455778899999999999999875433332222 24556667777799999
Q ss_pred HHhhCCCCC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC-------------------------------CChHH-
Q 006672 186 VFDETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-------------------------------KNVAS- 232 (636)
Q Consensus 186 ~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------------------------------~~~~~- 232 (636)
.++.....+ -..+...++.++..|.+...++.|......+.. .+..+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 888776521 144566788899999999999998887766641 11222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
...+.-...+.+...+++.-|-.-. ..++..|..+..+|.+.|++.+|+.+|..+.....--+...|-.+..++-.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 1111112223344444444333222 223556777888888888888888888888876545566778888888888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-----cH-------HHHHHHHHHcC
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-----TW-------TAMIWGLAIHG 376 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~-------~~li~~~~~~g 376 (636)
.|..++|.+.|+.++... |.+..+-..|...|.+.|+.++|.+++..+..||.. .| -.....+.+.|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 888888888888888765 556667777888888888888888888887655411 11 11223344455
Q ss_pred ChHHHHHHHHHHhHcC---------------------------------------------------------------C
Q 006672 377 RYEQAIQYFKKMMYSG---------------------------------------------------------------T 393 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g---------------------------------------------------------------~ 393 (636)
+.++=+.+-..|+..+ +
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 5544333322222110 0
Q ss_pred CCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHHHHhcCCchHHHHHHHHHHHH-Hhcc
Q 006672 394 EPDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQDSQGYQNSQNSFTK-LLQL 466 (636)
Q Consensus 394 ~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~l 466 (636)
.-+. ..+.-++.+..+.+++++|..+...+...+-...+. ..-.+++.+....+++.+|.+.++.+..+ .+-.
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 0010 123445556677788888888777766432222222 22344555666778888888887766544 2223
Q ss_pred CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHH
Q 006672 467 KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIH 532 (636)
Q Consensus 467 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~ 532 (636)
+|--...|+...+...+.|+-.--.+.+...... .|+.....+.+.+ .+.|..+.++.+...|
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~g-h~~~~~~s~~~Al~~y 763 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYG-HNLFVNASFKHALQEY 763 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeec-hhHhhccchHHHHHHH
Confidence 4444556665566666666433333333332221 2221112233333 3346666677776655
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=4e-11 Score=114.45 Aligned_cols=391 Identities=13% Similarity=0.102 Sum_probs=258.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH--ccCChHHH-HHHHHHHHHhCCCCChhHHHH
Q 006672 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA--SLSLLSLG-RGLHCLIVKSGVEYDAFVRVH 169 (636)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 169 (636)
.+++-|.|+.. ...|...++.-+|+.|...|+..+...-..|++..+ +..+..-+ .+-|-.|.+.| +....+|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 45567777764 456789999999999999987766665555555432 33333322 23333444443 2222333
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC----CChHHHHHHHHHHHhcCC
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK----KNVASWVSLIDGFMRKGD 245 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~ 245 (636)
+.|.+.+ ++-+.. +.+..++..||.++++--..+.|.+++++... .+..++|.+|.+-.-.-+
T Consensus 191 ------K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG 257 (625)
T ss_pred ------ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc
Confidence 3455444 444444 66778889999999988888899998888763 466777877765443333
Q ss_pred HHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH-HHHHHH
Q 006672 246 LKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK----ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA-GVRVHN 320 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~ 320 (636)
-+-.-++..+-..||..|+|+++++..+.|+++. |++++.+|.+-|+.|...+|..+|....+.++..+ +..+..
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 2222222222236889999999999999997764 56788889999999999999999988888777644 333333
Q ss_pred HHH----HcCC----CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----------ChhcHHHHHHHHHHcCChHHH
Q 006672 321 YIS----CNDF----GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----------DLLTWTAMIWGLAIHGRYEQA 381 (636)
Q Consensus 321 ~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A 381 (636)
++. ...+ +.|...+..-++.+....+.+-|.++-.-.... ...-|..+....++....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2222 234445566677777888888888876554431 123455677778888889999
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch--HH-------
Q 006672 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS--QG------- 452 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~--~A------- 452 (636)
+..|+.|+-.-+-|+..+...+++|....|.++-.-++|..++. +|..-......-+...+++..-.. -+
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~ 496 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA 496 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 99999999888889999999999999999999999999998884 775555444444555555544111 11
Q ss_pred -----HHHHH---HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 453 -----YQNSQ---NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 453 -----~~~~~---~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
..+++ ....+..+.+ -.+...+..+-.+.+.|+.++|.+++....+.+-
T Consensus 497 ~ak~aad~~e~~e~~~~R~r~~~-~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 497 FAKCAADIKEAYESQPIRQRAQD-WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred HHHHHHHHHHHHHhhHHHHHhcc-CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 11111 1111111111 1345677788889999999999999999876653
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=1.7e-09 Score=108.75 Aligned_cols=359 Identities=11% Similarity=0.084 Sum_probs=259.7
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh----CCCCCCCCChhhHHHHHHHHHhcCC
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE----TPEKNKSESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g~ 214 (636)
+++..-++.|+.++....+. ++.+..+|.+-...=-..|+.+...+++++ +...|+.-+...|-.=...|-..|.
T Consensus 416 larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ags 494 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGS 494 (913)
T ss_pred HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCC
Confidence 33344444444444444433 344444444444444444554444444432 3334444444444444444444444
Q ss_pred hHHHHHHHhhCC------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHH
Q 006672 215 LRKAVELFGMMP------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFF 285 (636)
Q Consensus 215 ~~~A~~~~~~m~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~ 285 (636)
.-.+..+.+... +.--.+|..-.+.|.+.+.++-|..+|....+- +-..|...+..--..|..+.-..+|+
T Consensus 495 v~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 495 VITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444444433333 122346777778888888888888888876642 35678887777778899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChh
Q 006672 286 QMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLL 363 (636)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~ 363 (636)
+.... ++-....+.......-..|+...|+.++..+.+.. +.+..++.+-+.......+++.|+.+|.+... ++..
T Consensus 575 kav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 575 KAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 99876 34444555556666677899999999999999876 56888999999999999999999999998775 6777
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
.|.--+...--.++.++|++++++.++ .-|+ ...|..+.+.+-+.++++.|...|..-.+ ..+-.+..|-.+.++
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKL 728 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHH
Confidence 887777777778999999999999998 7788 55888888899999999999999987653 344457789999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeE
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 510 (636)
=-+.|.+-.|..+++++. -.+|+|...|...+.+-.+.|..+.|..+..++.+.- |..|.-|
T Consensus 729 eEk~~~~~rAR~ildrar----lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LW 790 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRAR----LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLW 790 (913)
T ss_pred HHHhcchhhHHHHHHHHH----hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhH
Confidence 999999999999998665 4589999999999999999999999999988887743 4444444
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.4e-14 Score=141.98 Aligned_cols=251 Identities=14% Similarity=0.185 Sum_probs=110.3
Q ss_pred HHHHHhcCCHHHHHHHHhhC-C----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006672 237 IDGFMRKGDLKKAGELFEQM-P----EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 311 (636)
...+.+.|++++|++++++. . ..|...|..+...+...++++.|...++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 44455556666666666322 1 123445555555666666777777777777654322 33444444444 56667
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc-----CCChhcHHHHHHHHHHcCChHHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK-----EKDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
+++|.++.....+.. +++..+..++..+.+.++++++.++++.+. +.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777776666554432 445556667777777788888777777644 2466788888899999999999999999
Q ss_pred HHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
+.++ ..|+ ......++..+...|+.+++.++++...+. .+.++..+..+..+|...|+.++|...++++. +
T Consensus 171 ~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~----~ 242 (280)
T PF13429_consen 171 KALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKAL----K 242 (280)
T ss_dssp HHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH----H
T ss_pred HHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccc----c
Confidence 9999 6776 567888889999999999999999988753 25677788999999999999999999999654 5
Q ss_pred cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 466 LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 466 l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+|+|+.....++.++...|+.++|.+++++..+
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999999999887643
No 34
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.3e-11 Score=118.07 Aligned_cols=380 Identities=14% Similarity=0.042 Sum_probs=249.1
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHH
Q 006672 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMY 174 (636)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~ 174 (636)
+.....-|-++|.+++|+..|.+..+ +.|| ..-|...-.+|...|+++...+--...++. .|+ +..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 34445567778888888888888887 4577 666677777777888888877776666654 333 33455556666
Q ss_pred HhcCChHHHHHH------HhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---------------------
Q 006672 175 VQLGKTRGAFKV------FDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------------------- 227 (636)
Q Consensus 175 ~~~g~~~~A~~~------~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------------- 227 (636)
-..|++++|+.= ++...... -..++.-..+.--..++.+-+..=+.
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s-------~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNAS-------IEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccch-------hHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 677777766531 11111100 00011000000001112222221011
Q ss_pred ---------CChHHHHHHHHHHHhc-CCHHHHHHHHhhC-------CCCC---------hhhHHHHHHHHHhCCChHHHH
Q 006672 228 ---------KNVASWVSLIDGFMRK-GDLKKAGELFEQM-------PEKG---------VVSWTAMINGFSQNGEAEKAL 281 (636)
Q Consensus 228 ---------~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-------~~~~---------~~~~~~li~~~~~~g~~~~A~ 281 (636)
.|...-..+=..+... ..+..|...+.+- ...+ ..+.+.-..-+.-.|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 1111111111111111 1233333333221 1111 223333333455678999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--
Q 006672 282 AMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-- 359 (636)
Q Consensus 282 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-- 359 (636)
..|+..+.....++.. |.-+..+|....+.++....|....+.+ +.++.+|..-..++.-.+++++|..=|++...
T Consensus 347 ~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999865444432 7777778999999999999999999877 67888898888999999999999999998876
Q ss_pred -CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----
Q 006672 360 -KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----- 432 (636)
Q Consensus 360 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----- 432 (636)
.++..|--+..+..+.+++++++..|++..+ -.|+ +..|+.....+...++++.|.+.|+..+. ++|+
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~---LE~~~~~~~ 499 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE---LEPREHLII 499 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---hcccccccc
Confidence 3566777777777888999999999999998 4566 67899999999999999999999998874 4444
Q ss_pred --hhHH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 433 --VKHH--TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 433 --~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+..+ -.++-.- =.+++..|.++++ +.++++|+...+|.+|+..-.+.|+.++|+++|++...
T Consensus 500 v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~----KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 500 VNAAPLVHKALLVLQ-WKEDINQAENLLR----KAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccchhhhhhhHhhhc-hhhhHHHHHHHHH----HHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 1222111 2378888888887 45589999999999999999999999999999997654
No 35
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.54 E-value=6e-12 Score=130.96 Aligned_cols=328 Identities=12% Similarity=0.119 Sum_probs=233.2
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC---CCCChHHHHHHHHHHHhcCCHHHHHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM---PKKNVASWVSLIDGFMRKGDLKKAGELF 253 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~~~~~li~~~~~~g~~~~A~~~~ 253 (636)
.|++++|.+++.++.... +.+...|.+|...|-+.|+.+++...+-.. .+.|...|..+.....+.|.++.|.-.|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 388888888888887666 677788888888888888888887765333 3566778888888888888888888888
Q ss_pred hhCCCCChh---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcHHHHHHHHHHHH-c
Q 006672 254 EQMPEKGVV---SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----TVVSALSACAKVGALEAGVRVHNYISC-N 325 (636)
Q Consensus 254 ~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~-~ 325 (636)
.+..+.+.. ..---+..|.+.|+...|++-|.++.....+.|.. +.-.++..+...++-+.|.+.++.... .
T Consensus 231 ~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 231 SRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 877654432 22233567888888888888888888763222222 223345555566666777777776665 2
Q ss_pred CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----C----------------------ChhcHH----HHHHHHHHc
Q 006672 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----K----------------------DLLTWT----AMIWGLAIH 375 (636)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~----------------------~~~~~~----~li~~~~~~ 375 (636)
+-..+...++.++.+|.+...++.|......+.. + +..+|. -+.-++...
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L 390 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHL 390 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcc
Confidence 2345566677888888888888877766544332 1 111121 122334444
Q ss_pred CChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 006672 376 GRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
...+....+.....+..+.|+ ...|.-+..++...|.+.+|..+|..+.. ...--+...|--++.+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~-~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN-REGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc-CccccchhhhHHHHHHHHHHhhHHHHH
Confidence 445555555555666665555 45888999999999999999999999985 323334778999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeE
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSY 510 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~ 510 (636)
+.|+ +.+.+.|.+..+-.+|+.+|.+.|+.++|.+.++.|.--+-..-++|+|
T Consensus 470 e~y~----kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 470 EFYE----KVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHH----HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 9998 4557899999999999999999999999999999886333222356666
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=7.1e-12 Score=128.66 Aligned_cols=281 Identities=11% Similarity=0.048 Sum_probs=134.0
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHH--HHHHHHHhcCCHHHHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWV--SLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~--~li~~~~~~g~~~~A~~~ 252 (636)
.|+++.|++.+....+.. +.....|........+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~-~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA-EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 577777777776654321 11122222223334667777777777766653 2222222 224566666777777777
Q ss_pred HhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC
Q 006672 253 FEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 253 ~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (636)
++++.+. +......+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~------------------------- 229 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ------------------------- 229 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH-------------------------
Confidence 6665532 3455666677777777777777777777765533222 1110000
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 406 (636)
..+..++.......+.+...++++.++. .++.....+..++...|+.++|.+++++..+ ..||.... ++.+
T Consensus 230 --~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~ 303 (398)
T PRK10747 230 --QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIP 303 (398)
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHh
Confidence 0111111111222223333333333332 2344444455555555555555555555544 22332111 1122
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
....++.+++.+..+...+ ..+-++..+.++..++.+.|++++|.+.|+++. +.+| +...+..|+.++.+.|+
T Consensus 304 ~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al----~~~P-~~~~~~~La~~~~~~g~ 376 (398)
T PRK10747 304 RLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL----KQRP-DAYDYAWLADALDRLHK 376 (398)
T ss_pred hccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHcCC
Confidence 2233555555555555543 112234444555555555555555555555332 3344 23334455555555555
Q ss_pred hhHHHHHHHHH
Q 006672 487 WKDVARVRTLM 497 (636)
Q Consensus 487 ~~~A~~~~~~m 497 (636)
.++|.+++++-
T Consensus 377 ~~~A~~~~~~~ 387 (398)
T PRK10747 377 PEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=4e-12 Score=121.81 Aligned_cols=429 Identities=13% Similarity=0.103 Sum_probs=203.4
Q ss_pred hHHHHHHHHHHHHhCCCCChhH-HHHHHHHhhcCCChHHHHHHhc----cCCCCC----cchHHHHHHHHHhCCCchHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRI-TTQLISSASLHKSIDYALSIFD----HFTPKN----LHIFNVLIRGLAENSHFQSCI 114 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~f~----~~~~~~----~~~~~~li~~~~~~g~~~~A~ 114 (636)
..+|...++-+++....|+.-. --.+-+.+.+...+..|++.+. +.|.-+ +...|.+.-.+.+.|.++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 6677777777777766555432 2234456777788888887764 333222 223444445677888888888
Q ss_pred HHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCC------------ChhHHHH-----HHHHHHhc
Q 006672 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY------------DAFVRVH-----LADMYVQL 177 (636)
Q Consensus 115 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~------------~~~~~~~-----li~~~~~~ 177 (636)
..|+...+. .|+..+--.|+-.+...|+-+..++.|..|+.....+ +....|. .+.-.-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 888887763 4776654445555556778888888888888654322 2222221 11222222
Q ss_pred CC--hHHHHHHHhhCCCCCCCCChh---------------------hHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHH
Q 006672 178 GK--TRGAFKVFDETPEKNKSESVL---------------------LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWV 234 (636)
Q Consensus 178 g~--~~~A~~~~~~m~~~~~~~~~~---------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 234 (636)
+. .+++.-.--++..--+.|+-. .--.-...+.++|+++.|++++.-+...|..+-+
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 11 111111111111000011100 0112234577888888888888777755443322
Q ss_pred H----HHHHHHh--cCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006672 235 S----LIDGFMR--KGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (636)
Q Consensus 235 ~----li~~~~~--~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 305 (636)
+ |...+.- -.++.+|...-+.....| ......-...-..+|++++|.+.|++.+...-.-....|+ +.-.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hccc
Confidence 2 2222111 123444444444333221 1111111122233455555555555554432111111121 1112
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
+-..|++++|.+.|-.+... +..+..+...+...|-...+...|.+++.+... .|+....-|...|-+.|+-..|.
T Consensus 534 ~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 33445555555544433221 122344444445555555555555555544332 34444555555555555555554
Q ss_pred HHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH-HHHhcCCchHHHHHHHHHH
Q 006672 383 QYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN-LLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 383 ~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~ 460 (636)
+.+-+--. ..| |..|...|..-|....-+++++++|++.. -+.|+..-|..|+. ++.|.|++..|.++|+..-
T Consensus 613 q~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 613 QCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred hhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44333222 222 23344444444444444555555555443 24555555544443 2334555555555555443
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcC
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
++ -|.|....-.|..++...|
T Consensus 688 rk----fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 688 RK----FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred Hh----CccchHHHHHHHHHhcccc
Confidence 32 3555555555555555444
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3.5e-10 Score=109.46 Aligned_cols=443 Identities=13% Similarity=0.117 Sum_probs=215.6
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
...|++++++.+... ..+...|-..+.+=.++..+..|+.+|++.. ++--..|...+-.=-..|+...|.++|++-
T Consensus 89 ~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 89 IQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 445555666555543 3344555555555555555555555555332 121123333333333345555555555444
Q ss_pred HHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CC-CCC
Q 006672 121 LRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NK-SES 198 (636)
Q Consensus 121 ~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~-~~~ 198 (636)
.+ ..|+...|.+.++.=.+.+..+.|+.+++..+-. .|++..|--....=.++|.+..|+.+|+...+. |- ..+
T Consensus 168 ~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~ 243 (677)
T KOG1915|consen 168 ME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA 243 (677)
T ss_pred Hc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence 43 3455555555555544555555555555544432 344444444444444455555555554433211 00 001
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCC-----------------------------------------------CCChH
Q 006672 199 VLLWNVLINGCSKIGYLRKAVELFGMMP-----------------------------------------------KKNVA 231 (636)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~-----------------------------------------------~~~~~ 231 (636)
...+.+....-.++..++.|.-+|.-.. .-|-.
T Consensus 244 e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 244 EILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 1111111111122222233322222111 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCC------------hhhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKG------------VVSWTA-MINGFSQNGEAEKALAMFFQMLDAGVRANDFT 298 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 298 (636)
+|--.+..-...|+.+...++|++....- +..|-. .+-.=....+.+.+.++|+..++. ++...+|
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 55556666666667777777766654211 111111 111113355666666777666663 4445566
Q ss_pred HHHHHHHHH----hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHH
Q 006672 299 VVSALSACA----KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (636)
Q Consensus 299 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 371 (636)
|.-+--.|+ +..++..|.+++...+ |..|...++...|+.-.+.++++....++++-.+ .|..+|.-....
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaEl 480 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAEL 480 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHH
Confidence 665544443 3456667777766654 4456666777777777777777777777766654 244566666555
Q ss_pred HHHcCChHHHHHHHHHHhHcCC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH-----h
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGT-EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS-----R 445 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~-----~ 445 (636)
-...|+.+.|..+|+-.+.... ......|...|.--...|.++.|..+++++.+. .+-..+|-+....-. +
T Consensus 481 E~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r---t~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 481 ETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR---TQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh---cccchHHHhHHHHhccccccc
Confidence 5566777777777776665421 111234555555445667777777777776642 233334444433222 2
Q ss_pred cC-----------CchHHHHHHHHHHHHHhccCCCCc--hhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 446 VG-----------QDSQGYQNSQNSFTKLLQLKPKHP--SSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 446 ~g-----------~~~~A~~~~~~~~~~~~~l~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.| .+..|..+|+++....-+.+|+.. ......-+.-...|...+...+-.+|
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 23 445566666666555545544322 12222233333344444444444444
No 39
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=1.3e-11 Score=127.37 Aligned_cols=116 Identities=14% Similarity=0.095 Sum_probs=67.5
Q ss_pred hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CCh--HHHHHHHHHHHhcCCHHHHHH
Q 006672 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNV--ASWVSLIDGFMRKGDLKKAGE 251 (636)
Q Consensus 176 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~~~~~li~~~~~~g~~~~A~~ 251 (636)
..|+++.|++.+.+..+.. +-....+-.......+.|+++.|.+++.+..+ |+. .+.......+...|+++.|..
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4677777777776665432 11223333444556666777777777766432 222 233334555666666666666
Q ss_pred HHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006672 252 LFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (636)
Q Consensus 252 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 292 (636)
.++.+.+. +...+..+...|.+.|++++|.+++..+.+.++
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~ 218 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL 218 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence 66665432 344566666667777777777777777666653
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.49 E-value=2.6e-13 Score=133.04 Aligned_cols=250 Identities=19% Similarity=0.224 Sum_probs=68.9
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCC-CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC---hHHHHHHHHHHHhcCC
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN---VASWVSLIDGFMRKGD 245 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~ 245 (636)
+...+.+.|++++|++++++..... .+.|..-|..+.......+++++|++.++++...+ +..+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3555556666666666664332222 13344444444445555555555555555555322 2233444444 45555
Q ss_pred HHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 246 LKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 246 ~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
+++|.+++...-+ ++...+..++..+.+.++++++.++++++.... .+++...|..+...+.+.|+.++|...++.+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555544322 234445555566666666666666666655422 2334445555555555666666666666666
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~ 398 (636)
++.. |.+..+...++..+...|+.+++.+++..... .|...|..+..+|...|+.++|+..|++..+ ..| |+.
T Consensus 173 l~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~ 249 (280)
T PF13429_consen 173 LELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPL 249 (280)
T ss_dssp HHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HH
T ss_pred HHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--ccccccc
Confidence 5544 33455555555555555555554444443332 3444555555555555555555555555554 233 234
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
+...+..++...|+.++|.++..+.
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 4444555555555555555555443
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.48 E-value=1e-10 Score=120.85 Aligned_cols=284 Identities=12% Similarity=0.037 Sum_probs=207.8
Q ss_pred HhcCChHHHHHHHhhCCC--CCh-HHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC--hhhHHHHHHHHHhCCChHHHHH
Q 006672 210 SKIGYLRKAVELFGMMPK--KNV-ASWVSLIDGFMRKGDLKKAGELFEQMPE--KG--VVSWTAMINGFSQNGEAEKALA 282 (636)
Q Consensus 210 ~~~g~~~~A~~~~~~m~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~A~~ 282 (636)
...|+++.|.+.+.+..+ |++ ..+-....++.+.|+.+.|.+.|.+..+ ++ ....-.....+.+.|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 468999999999988764 333 3344556778889999999999998643 23 2333445778889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHH-------HHhhHHhhcCCHHHHHHHHh
Q 006672 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT-------ALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 283 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~~g~~~~A~~~~~ 355 (636)
.++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+...... .+++.-......+...+.++
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999875 4466778889999999999999999999999987543332211 11211122233445555666
Q ss_pred hccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHH--HHHH-HHHHHhcCcHHHHHHHHHHhHhhcCC
Q 006672 356 ETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV--FLAI-LTACWYSGQVKLALNFFDSMRFDYFI 429 (636)
Q Consensus 356 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~ 429 (636)
..+. .+...+..+...+...|+.++|++++++..+ ..||... +..+ .......++.+.+.+.++...+...-
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~ 331 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD 331 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC
Confidence 6654 4788999999999999999999999999998 4555442 1111 12234457888999999888763322
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.|+.....+++.++.+.|++++|.+.|+.+. .++..| ++..+..++..+.+.|+.++|.+++++...
T Consensus 332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~--a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPKCCINRALGQLLMKHGEFIEAADAFKNVA--ACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred ChhHHHHHHHHHHHHHcccHHHHHHHHHHhH--HhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222667799999999999999999998432 224567 555677999999999999999999997643
No 42
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.7e-09 Score=104.87 Aligned_cols=189 Identities=12% Similarity=0.089 Sum_probs=143.4
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKS 138 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 138 (636)
+...|-.....=-.++++..|+.+|++.. .++...|-..+..=.++.....|..++++....=.+.|..-|. -+-.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK-Y~ym 150 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK-YIYM 150 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-HHHH
Confidence 34444444444455788899999999776 4577788888888899999999999999987632222333332 2222
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHH
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKA 218 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 218 (636)
=-..|+...|+++|+.-.+ .+|+...|++.|+.=.+...++.|+.++++..-- .|++.+|--...--.+.|....|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHH
Confidence 3357899999999999887 4899999999999999999999999999987643 79999999999999999999999
Q ss_pred HHHHhhCCC------CChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 006672 219 VELFGMMPK------KNVASWVSLIDGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 219 ~~~~~~m~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (636)
..+|....+ .+...+.++...=.++..++.|.-+|+-
T Consensus 227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988763 1233455555555566677777777653
No 43
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=8.2e-12 Score=126.12 Aligned_cols=273 Identities=15% Similarity=0.128 Sum_probs=212.0
Q ss_pred ChHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC------ChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 214 YLRKAVELFGMMPK--K-NVASWVSLIDGFMRKGDLKKAGELFEQMPEK------GVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 214 ~~~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
+.++|+..|..... + ...+...+..+|...+++++|+++|+.+.+. +...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 46777777777442 2 2355667778888888888998888887643 45677776654432 2233333
Q ss_pred -HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh
Q 006672 285 -FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL 363 (636)
Q Consensus 285 -~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 363 (636)
+.+.+. -+-.+.||..+.++|+-.++.+.|++.|++.++.+ +.....|+.+..-+.....+|.|...|+.....|..
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 233332 24456889999999999999999999999988765 457888898888899999999999999988875554
Q ss_pred ---cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 364 ---TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 364 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+|-.+.-.|.++++++.|+-.|+++.+ +.|. .+....+...+-+.|+.|+|+++++++.. +.| ++..--.
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~ 562 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYH 562 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHH
Confidence 556677889999999999999999998 7776 45666677788899999999999999874 334 4444555
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+..+...+++++|+..+++. .++.|++...|..++.+|.+.|+.+.|+.-|.-|.+..
T Consensus 563 ~~~il~~~~~~~eal~~LEeL----k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEEL----KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHH----HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 677888899999999998854 46789999999999999999999999999998887754
No 44
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.47 E-value=6.6e-11 Score=109.24 Aligned_cols=278 Identities=13% Similarity=0.152 Sum_probs=167.5
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCC-CC------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006672 235 SLIDGFMRKGDLKKAGELFEQMPE-KG------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA 307 (636)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 307 (636)
+|.+.|.+.|..|.|+++-+.+.+ || ....-.|..-|...|-+|.|..+|..+.+.| ..-......++..|-
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ 152 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQ 152 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHH
Confidence 444555555555555555544432 22 1233344555556666666666666665543 223344555666666
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCc----hhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHH
Q 006672 308 KVGALEAGVRVHNYISCNDFGLK----GAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 380 (636)
...+|++|+++-..+.+.+-.+. ...|.-|...+....+.+.|..++.+..+. .+..--.+...+...|+++.
T Consensus 153 ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 153 ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHH
Confidence 66666666666665555442222 223455556666667777777777776652 33344456667788888999
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
|++.++...+.+..--+.+...|..+|.+.|+.+++..++.++.+ ..+.+..-..+.+......-.+.|...+.+-.
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql 309 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQL 309 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 999888888854333355777788888899999999888888875 34555555556565555555666666655333
Q ss_pred HHHhccCCCCchhHHHHHHHHH-H--cCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEec
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYA-A--EGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFE 521 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~-~--~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~ 521 (636)
.-.|. ...+..|+.... . .|++.+...+++.|....++..|.+..-..+-..|.|.
T Consensus 310 ----~r~Pt-~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 310 ----RRKPT-MRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ----hhCCc-HHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 33563 334444444333 2 45688888889999888787777665555555555443
No 45
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=2.3e-10 Score=110.62 Aligned_cols=285 Identities=13% Similarity=0.070 Sum_probs=165.5
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCC--CChhhHHHHHHHHHhcCC
Q 006672 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS--ESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~ 214 (636)
.++-.....+++.+-.+.....|++.+...-+....+.-...++|+|+.+|+++..+..- .|..+|..++-.--...+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 344444556666666666666666666555555555556667777777777777654311 134455444322211111
Q ss_pred hH-HHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 215 LR-KAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 215 ~~-~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
.. -|..+ -.+.+--+.|...+.+-|+-.++.++|...|++..+.| ...|+.|..-|....+...|++-+++..+-
T Consensus 315 Ls~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 315 LSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 11 11111 11112234455556666666777777777777766543 456777777777777777777777777764
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-CC--hhcHHH
Q 006672 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KD--LLTWTA 367 (636)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~--~~~~~~ 367 (636)
+ +-|-..|-.+..+|.-.+...-|.-.|+...+.. |.|..+|.+|.+.|.+.+++++|.+.|.+... .| ...+..
T Consensus 394 ~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 394 N-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred C-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 3 4466677777777777777777777777766554 56677777777777777777777777766554 22 356666
Q ss_pred HHHHHHHcCChHHHHHHHHHHhH----cCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMY----SGTEPD-G-TVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+...|-+.++.++|.+.|++-++ .|...+ . .....|..-+.+.+++++|..+.....
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 77777777777777766666544 222222 1 122223344455566666655544443
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.46 E-value=7.2e-11 Score=121.25 Aligned_cols=275 Identities=13% Similarity=0.110 Sum_probs=173.1
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHH
Q 006672 107 NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFV--RVHLADMYVQLGKTRGAF 184 (636)
Q Consensus 107 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~ 184 (636)
.|+++.|.+.+....+.+-.| ...|.....+..+.|+++.+.+.+.++.+. .|+... .......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 455555555555443321111 111222222334555666666666655543 233221 112244555666666666
Q ss_pred HHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC---Ch--------HHHHHHHHHHHhcCCHHHHHHHH
Q 006672 185 KVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK---NV--------ASWVSLIDGFMRKGDLKKAGELF 253 (636)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~ 253 (636)
..++++.+.. +.+......+...|.+.|++++|++++..+.+. +. .+|..++....+..+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666665554 445555666666666666666666555555521 11 12333344444445566677777
Q ss_pred hhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 254 EQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 254 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
+.++. .++.....+...+...|+.++|..++++..+. +|+.... ++.+....++.+.+.+..+...+.. |.|
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~ 327 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDT 327 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCC
Confidence 77653 35677788888899999999999999888873 5555221 2333345588888888888887665 677
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
+....++...+.+.+++++|.+.|+...+ |+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888899999999999999999988875 7777888899999999999999999988754
No 47
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.44 E-value=3.3e-10 Score=108.88 Aligned_cols=426 Identities=11% Similarity=0.062 Sum_probs=276.3
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCCCC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFTPK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 136 (636)
+-.+...|...|.......+|+..++-+... .-..--.+...+.+...+.+|+.+|+-.+..-...+..+-..++
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 3345556667777777888888888754422 11222234455677788999999998776642222333333333
Q ss_pred H----HHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCC------------CChh
Q 006672 137 K----SVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKS------------ESVL 200 (636)
Q Consensus 137 ~----~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------------~~~~ 200 (636)
. .+.+.|.++.|..-|+...+. .|+..+...|+-++.--|+-++..+.|.+|...... |+..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 3 356889999999999998875 577776666777777889999999999888644222 2223
Q ss_pred hHHHHH-----HHHHhcC--ChHHHHHHHhhCC----CCChH-------------HHH--------HHHHHHHhcCCHHH
Q 006672 201 LWNVLI-----NGCSKIG--YLRKAVELFGMMP----KKNVA-------------SWV--------SLIDGFMRKGDLKK 248 (636)
Q Consensus 201 ~~~~li-----~~~~~~g--~~~~A~~~~~~m~----~~~~~-------------~~~--------~li~~~~~~g~~~~ 248 (636)
..|..| .-.-+.+ +.++++-.--++. .|+-. .+. .-..-|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 333222 2222211 2233332222222 22210 010 11234678899999
Q ss_pred HHHHHhhCCCCChhh----HHHHH-HHHHhC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 249 AGELFEQMPEKGVVS----WTAMI-NGFSQN-GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 249 A~~~~~~~~~~~~~~----~~~li-~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
|.+++.-..+.|..+ -|.|- --|.+. .++..|..+-+...... .-+......-.+.....|+++.|.+.+.+.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 988888777666332 22222 223333 35666666655554322 222222222222334568999999999999
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~ 398 (636)
+...-......|| +.-.+-+.|++++|+..|-.+.. .++...-.+.+.|-...+...|++++-+... +-|+ +.
T Consensus 517 l~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPA 593 (840)
T ss_pred HcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHH
Confidence 8655333333333 44457789999999999977653 6777777888889989999999999988776 5565 67
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
....|...|-+.|+-.+|.+++-.--+ -++-+.++..-|..-|....-+++|+.+|+++. -+.| +.+-|..|+
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa----liqp-~~~kwqlmi 666 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA----LIQP-NQSKWQLMI 666 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH----hcCc-cHHHHHHHH
Confidence 888888999999999999998765432 245578888888888888889999999999765 3456 667777665
Q ss_pred H-HHHHcCChhHHHHHHHHHHhC
Q 006672 479 N-IYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 479 ~-~~~~~g~~~~A~~~~~~m~~~ 500 (636)
. ++.+.|++..|..+++...++
T Consensus 667 asc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 667 ASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHhcccHHHHHHHHHHHHHh
Confidence 4 566789999999999988653
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-09 Score=105.28 Aligned_cols=250 Identities=14% Similarity=0.105 Sum_probs=121.4
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC------ChHHHHHHHHHHHhcC
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKG 244 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g 244 (636)
..+|-...+.+++..-.+.....|.+.+...-+....+.....++++|+.+|+++.+. |..+|+.++-.--.+.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 3444455566666666666666665544444444455555566666666666666543 2334444433222211
Q ss_pred CHHH-HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 245 DLKK-AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 245 ~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
.+.- |..++ .+.+--+.|...+..-|.-.++.++|...|++.++.+ +-....|+.+..-|....+...|.+-++.++
T Consensus 314 kLs~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1111 11111 1111223444444555555555555655555555543 2223344444455555555555555555555
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHH
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
+.. |.|-..|-.|.++|.-.+...-|+-.|++..+ .|...|.+|..+|.+.++.++|++.|.+....|-. +...+
T Consensus 392 di~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l 469 (559)
T KOG1155|consen 392 DIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSAL 469 (559)
T ss_pred hcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHH
Confidence 443 44445555555555555555555555544432 34445555555555555555555555555443211 23444
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 401 LAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+...+-+.++.++|.++|+.-.
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v 493 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYV 493 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455555555555555555554443
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.6e-11 Score=121.56 Aligned_cols=278 Identities=15% Similarity=0.182 Sum_probs=207.9
Q ss_pred ChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC------CChHHHHHHHHHHHhcCCHH-HHHH
Q 006672 179 KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK------KNVASWVSLIDGFMRKGDLK-KAGE 251 (636)
Q Consensus 179 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~------~~~~~~~~li~~~~~~g~~~-~A~~ 251 (636)
+..+|...|..++..- .-+......+..+|...+++++|..+|+.+.. .+..+|.+.+--+-+.=.+. -|..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 5678888888855432 33345556677889999999999999988873 45677877765443322221 1222
Q ss_pred HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 252 LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 252 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
+.+.. ...+.+|.++...|.-+++.+.|++.|++..+. .| ...+|+.+..-+.....+|.|...|...+... +.+
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rh 488 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRH 488 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chh
Confidence 22222 234789999999999999999999999999875 44 67788877777788888999999998877432 223
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
-..|-.|...|.|.++++.|+-.|+...+ .+.+....+...+-+.|+.++|+++++++.. +.|. +..-..-...
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~i 566 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASI 566 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHH
Confidence 33444577889999999999999999886 3566677777888899999999999999988 4443 3444455566
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+...+++++|++.++++++ +.| +...|..++..|.+.|+.+.|+.-|.-|. .++|+-
T Consensus 567 l~~~~~~~eal~~LEeLk~---~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~----~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKE---LVPQESSVFALLGKIYKRLGNTDLALLHFSWAL----DLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHccchHHHHhhHHHh----cCCCcc
Confidence 7778999999999999985 445 47788999999999999999999887544 678863
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.5e-09 Score=107.82 Aligned_cols=454 Identities=12% Similarity=0.048 Sum_probs=289.8
Q ss_pred HHHHHHHHhcCC---hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhc--cCCCCCcchHHHHHHHHHh
Q 006672 32 THIISLIHSSNS---TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFD--HFTPKNLHIFNVLIRGLAE 106 (636)
Q Consensus 32 ~~~~~~l~~~~~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~--~~~~~~~~~~~~li~~~~~ 106 (636)
.-+..+++.+-. ...|.-+-+.+...+ -|+.-.--+..+|.-.|..+.|..+.. .+...|..+.......+.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~ 94 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVK 94 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 344444443321 455555555555444 344444457777777888888887775 4457788888888888888
Q ss_pred CCCchHHHHHHH----HhHHCC---------CCCCccc----HHHHH-------HHHHccCChHHHHHHHHHHHHhCCCC
Q 006672 107 NSHFQSCISHFV----FMLRLS---------VRPNRLT----YPFVS-------KSVASLSLLSLGRGLHCLIVKSGVEY 162 (636)
Q Consensus 107 ~g~~~~A~~~~~----~m~~~g---------~~p~~~t----~~~ll-------~~~~~~~~~~~a~~~~~~~~~~g~~~ 162 (636)
..++++|+.++. .+.... +.+|..- -+.-. ..+....+.++|+..+.+.+..
T Consensus 95 lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---- 170 (611)
T KOG1173|consen 95 LKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA---- 170 (611)
T ss_pred HHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----
Confidence 999999998887 221100 1111111 00001 1222334455566666555433
Q ss_pred ChhHHHHHHHHHHhc-CChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHHHHHH--hhC--CCCChHHHHHH
Q 006672 163 DAFVRVHLADMYVQL-GKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELF--GMM--PKKNVASWVSL 236 (636)
Q Consensus 163 ~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~--~~m--~~~~~~~~~~l 236 (636)
|+.-+.++...-... =-.++-..+|+.+.-. -...++.....+.....-...-++....- ..+ .+.++......
T Consensus 171 D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ 250 (611)
T KOG1173|consen 171 DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEK 250 (611)
T ss_pred chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHH
Confidence 333333322221110 0111223333322110 00111111111111110000000000000 000 02355566667
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 006672 237 IDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 313 (636)
.+-+...+++.+..++++...+.|. ..+..-|..+...|+..+-..+=.+|.+. .+-...+|-++.--|...|+.+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 7778889999999999999887663 34555677888999988888888888875 3556788999988888889999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
+|++.+......+ +.-...|-.+...|+-.|.-|+|...+....+ .....+--+.--|.+.++.+.|.+.|.+...
T Consensus 330 eARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 330 EARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 9999999887654 44566888899999999999999888776554 2222333345568889999999999999987
Q ss_pred cCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc-CCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 391 SGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY-FIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 391 ~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
+.|+ +...+-+.-...+.+.+.+|..+|+.....- .+.+ -..+++.|+.+|.+.+++++|+..++++ +
T Consensus 409 --i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~a----L 482 (611)
T KOG1173|consen 409 --IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKA----L 482 (611)
T ss_pred --cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHH----H
Confidence 7776 5566666666667899999999999876211 0111 2456889999999999999999999854 5
Q ss_pred ccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 465 QLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 465 ~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+.|.++.+|.+++-+|...|+++.|...|.+..-
T Consensus 483 ~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 483 LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 78999999999999999999999999999998876
No 51
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=4.5e-09 Score=109.38 Aligned_cols=434 Identities=15% Similarity=0.128 Sum_probs=263.6
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 006672 50 IHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTP----KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125 (636)
Q Consensus 50 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (636)
++..+...|+.|+..+|.+||..||..|+.+.|- +|.-|.- -+...++.++.+..+.++.+.+-
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556677899999999999999999999999998 8887763 35567888888888888877664
Q ss_pred CCCcccHHHHHHHHHccCChHHHHHHHHHHHH-------hCCCC-C-------------hhHHHHHHHHHHhcCChHHHH
Q 006672 126 RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVK-------SGVEY-D-------------AFVRVHLADMYVQLGKTRGAF 184 (636)
Q Consensus 126 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-------~g~~~-~-------------~~~~~~li~~~~~~g~~~~A~ 184 (636)
.|-..||..|+.+|...||+..-..+-+.+.. .|+.. . ..--...+....-.|-++.+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 58888999999999999987652222221221 22110 0 001122344445567777788
Q ss_pred HHHhhCCCCCCCCChhhHHHHHHHHH-hcCChHHHHHHHhhCCC-CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh-
Q 006672 185 KVFDETPEKNKSESVLLWNVLINGCS-KIGYLRKAVELFGMMPK-KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGV- 261 (636)
Q Consensus 185 ~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 261 (636)
+++..++... .-. +....++-+. .+..+++-..+.....+ +++.++.+++..-.-.|+++.|..++.+|.+.+.
T Consensus 160 kll~~~Pvsa-~~~--p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfp 236 (1088)
T KOG4318|consen 160 KLLAKVPVSA-WNA--PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFP 236 (1088)
T ss_pred HHHhhCCccc-ccc--hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCC
Confidence 8877776332 101 1111133222 23445666666666665 8999999999999999999999999999998762
Q ss_pred ----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH-----------HHHHHHH--
Q 006672 262 ----VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR-----------VHNYISC-- 324 (636)
Q Consensus 262 ----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~-----------~~~~~~~-- 324 (636)
..|-.++ + .++...+..+++-|.+.|+.|+..|+...+..+.+.|....+.+ ++..+..
T Consensus 237 ir~HyFwpLl~-g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~ 312 (1088)
T KOG4318|consen 237 IRAHYFWPLLL-G---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL 312 (1088)
T ss_pred cccccchhhhh-c---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence 2344433 3 78888999999999999999999999988888877443222111 1111110
Q ss_pred -----------------------cCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-------ChhcHHHHHHHHHH
Q 006672 325 -----------------------NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAI 374 (636)
Q Consensus 325 -----------------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~ 374 (636)
.|+.....+|...+ -...+|+-++.+++-..+..| ++..+..++.-|.+
T Consensus 313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr 391 (1088)
T KOG4318|consen 313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR 391 (1088)
T ss_pred HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence 12222222222211 122245545554444443321 22223222222211
Q ss_pred cC----------------------ChHHHHHHHHHHhHc----------------CCCC---------------------
Q 006672 375 HG----------------------RYEQAIQYFKKMMYS----------------GTEP--------------------- 395 (636)
Q Consensus 375 ~g----------------------~~~~A~~~~~~m~~~----------------g~~p--------------------- 395 (636)
.- ...+..++....+.. -..|
T Consensus 392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s 471 (1088)
T KOG4318|consen 392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS 471 (1088)
T ss_pred HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence 10 000111111000000 0000
Q ss_pred ----------------C--HHHHHHHHHHHHhcCcHHHHHHHHHHhHh-hcCCCCChhHHHHHHHHHHhcCCchHHHHHH
Q 006672 396 ----------------D--GTVFLAILTACWYSGQVKLALNFFDSMRF-DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNS 456 (636)
Q Consensus 396 ----------------~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 456 (636)
+ ...|..++.-|......+.|..+.++... +..+..+..-+..+.+++.|.+...++..+.
T Consensus 472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 0 02244555555556666666666665531 1123344556777888888888888888888
Q ss_pred HHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 457 QNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 457 ~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
+++.+ ..+..|.-..+..-+.+..+..|+.+...++.+-....|+..
T Consensus 552 ~e~ks-~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 552 YEDKS-SAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhH-HhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 87765 334455556677778888889999999999999999988876
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.36 E-value=3.4e-08 Score=99.54 Aligned_cols=261 Identities=12% Similarity=0.146 Sum_probs=164.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-----------C
Q 006672 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKG-------VVSWTAMINGFSQNGEAEKALAMFFQMLDAG-----------V 292 (636)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~ 292 (636)
..|..+...|-..|+++.|..+|++...-+ ..+|..-...=.+..+++.|+.++++..... .
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 357888899999999999999999887643 2456666666677888999999888775321 1
Q ss_pred CCCHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CCh
Q 006672 293 RANDF------TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDL 362 (636)
Q Consensus 293 ~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~ 362 (636)
++... .|...+..--..|-++..+.+++.+++..+. ++.+.-...-.+-...-++++.+++++-.. |++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11112 2233333334457788888899988876643 333333344445556678899999988765 554
Q ss_pred h-cHHHHHHHHHH---cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHhHhhcCCCCC--hh
Q 006672 363 L-TWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA--CWYSGQVKLALNFFDSMRFDYFIEPS--VK 434 (636)
Q Consensus 363 ~-~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 434 (636)
. .|++.+.-+.+ ....+.|..+|++.++ |.+|...-+..|+-| =-..|....|..++++... ++++. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 3 78887776654 2467999999999998 677765433333322 2346888999999998764 45544 44
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc--hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP--SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.|+..|.--...=-...-.++|+++. +.-|++- ....-.+..-.+.|..+.|..++.--.+
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaI----e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAI----ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHH----HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 56665543222222233344444443 3334322 2333455666677888888777765444
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=2.4e-09 Score=99.14 Aligned_cols=286 Identities=14% Similarity=0.157 Sum_probs=198.7
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC-CCh------HHHHHHHHHHHhcCCHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK-KNV------ASWVSLIDGFMRKGDLKKA 249 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~------~~~~~li~~~~~~g~~~~A 249 (636)
.++.++|.++|-+|.+.. +.+..+--+|.+.|-+.|..+.|+.+-..+.. ||. ...-.|..-|...|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 456677777777776433 33444455566667777777777777666553 332 2334566778888999999
Q ss_pred HHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 250 GELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF----TVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 250 ~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
+.+|..+.+.+ ....-.|+..|-+..+|++|++.-+++.+.+-.+..+ .|.-+...+....+.+.|...+...
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99998887744 3456678889999999999999999888876555433 3444555555567888999999988
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh----cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
.+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|.. +...|..+|.+.|+.++.+..+.++.+....++.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~- 284 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA- 284 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH-
Confidence 8765 555666677888999999999999999999886543 5677888999999999999999999884444443
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH---hcCCchHHHHHHHHHHHHHhccCCC
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS---RVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
-..+..--....-.+.|..++.+-.. -.|+...+..+++.-. .-|...+....++.+...-++..|.
T Consensus 285 -~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 285 -ELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred -HHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 23333322233334555554444332 3799988888887654 3455677777777777776666664
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=4.4e-09 Score=100.50 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=182.1
Q ss_pred cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC----ChHHHHHHHHHHHhcCCHHHHHHH
Q 006672 177 LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK----NVASWVSLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 177 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~li~~~~~~g~~~~A~~~ 252 (636)
.|++..|++...+-.+.+ +.....|..-+.+--+.|+.+.+-.++.+..++ +..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 588888888888766655 444555666666677788888888888777643 334566666777888888888777
Q ss_pred HhhCC---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 253 FEQMP---EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-------FTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 253 ~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
.++.. ..+.........+|.+.|++.....++..|.+.|.--|+ .++..++.-+...+..+.-...++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 66544 456778888889999999999999999999988865554 35666666666655555555555554
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC--ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHH
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
.+. ...++.+..+++.-+..+|+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+. ..-++..+
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~ 331 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLL 331 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHH
Confidence 432 2455666667777777777777777776666542 222 11222334455666655555555442 11223556
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+|...|.+.+.+.+|...|+...+ ..|+..+|+-+.+++.+.|+..+|.+..+++.
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~---~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALK---LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh---cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6666667777777777777775553 56777777777777777777777777766555
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.30 E-value=5.1e-09 Score=100.09 Aligned_cols=283 Identities=12% Similarity=0.078 Sum_probs=165.9
Q ss_pred HHHHHHh--CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006672 100 LIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (636)
Q Consensus 100 li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 177 (636)
+..+..+ .|++.+|.++..+-.+.+-.| ...|.....+.-..|+.+.+-..+.++-+..-.++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444433 567777777776655554322 2234444455556677777777777776654455566666666777777
Q ss_pred CChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-----------hHHHHHHHHHHHhcCCH
Q 006672 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-----------VASWVSLIDGFMRKGDL 246 (636)
Q Consensus 178 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~~~~~li~~~~~~g~~ 246 (636)
|+.+.|+.-.+++.+.+ +.+.........+|.+.|++.+...++..+.+.. ..+|..+++-....+..
T Consensus 167 ~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 167 RDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGS 245 (400)
T ss_pred CCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccc
Confidence 77777777766666555 5666667777777777777777777766665321 13455555555555555
Q ss_pred HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 247 KKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 247 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+.. .+-.+.+.++.+.-.+..+.-.
T Consensus 246 ~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 246 EGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred hHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHH
Confidence 554555555552 334555566666777777777777777777665555411 1223344555555555554444
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
+.. +.++..+.+|...|.+.+.+.+|...|+...+ ++..+|+-+..+|.+.|+..+|.+.+++..
T Consensus 322 ~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 322 KQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 332 34445666666666666666666666665443 455566666666666666666666555544
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=4.5e-09 Score=104.47 Aligned_cols=284 Identities=14% Similarity=0.121 Sum_probs=163.7
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHH
Q 006672 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLI 237 (636)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li 237 (636)
..++.+.-...+-+...+++.+..++++++.+.. ++....+..-|.++...|+..+-..+=.++.+ ....+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHH
Confidence 3344455555566667777777777777777665 66666666666777777776665555555542 3345666766
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 314 (636)
--|.-.|..++|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|...++++.
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 66666677777777776655433 356766777777777777777666655442 00000111112223455566666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 394 (636)
|.++|....... |.|+.+.+-+.-+..+.+.+.+|...|+.... ..+..... ..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~------------------------~ik~~~~e-~~ 452 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE------------------------VIKSVLNE-KI 452 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH------------------------Hhhhcccc-cc
Confidence 666666655433 44555555555444444445555444433221 00000000 00
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 395 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
--..+++.|..+|.+.+.+++|+..+++... -.+.+..+|++++-.|...|+++.|.+.|.++ +.+.|+|..+-
T Consensus 453 ~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKa----L~l~p~n~~~~ 526 (611)
T KOG1173|consen 453 FWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKA----LALKPDNIFIS 526 (611)
T ss_pred chhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHH----HhcCCccHHHH
Confidence 1234667777777777777777777777764 23445777777777777777777777777743 46677665544
Q ss_pred HHHH
Q 006672 475 VLLS 478 (636)
Q Consensus 475 ~~l~ 478 (636)
..|.
T Consensus 527 ~lL~ 530 (611)
T KOG1173|consen 527 ELLK 530 (611)
T ss_pred HHHH
Confidence 4443
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.8e-09 Score=99.96 Aligned_cols=228 Identities=13% Similarity=0.106 Sum_probs=197.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
+.|..+|.+.|.+.+|...|+.-+.. .|-..||..+-.+|.+..+++.|..++.+-++. +|.++....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56889999999999999999998876 566678888999999999999999999988865 366777777888889999
Q ss_pred CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 345 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
++.++|.++++...+ .++.+...+..+|.-.++.+-|+..|+++++.|+. ++..|..+.-+|...+++|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998876 35667777788888999999999999999999886 67889999999999999999999999
Q ss_pred HhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 422 SMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 422 ~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+.... --.|+ .++|-.+.......|++.-|.+.|+-+. .-+|++..+++.|+-.-.+.|+.++|..++.....
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL----~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLAL----TSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHh----ccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98752 23344 6788899999999999999999888544 56899999999999999999999999999998877
Q ss_pred CC
Q 006672 500 RS 501 (636)
Q Consensus 500 ~g 501 (636)
..
T Consensus 458 ~~ 459 (478)
T KOG1129|consen 458 VM 459 (478)
T ss_pred hC
Confidence 43
No 58
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=1.5e-09 Score=103.17 Aligned_cols=163 Identities=17% Similarity=0.072 Sum_probs=111.0
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|++.+++.......|. ...+..+..+
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 33444444445555555555555544432 2334555666667777777777777777766422232 3456666777
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.++++.+ ..|.++..+..++.++...|+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQ----TYNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHHhh
Confidence 78888888888888887752 223466778888888899999999988886654 357777888888888989999
Q ss_pred hhHHHHHHHHHHh
Q 006672 487 WKDVARVRTLMQR 499 (636)
Q Consensus 487 ~~~A~~~~~~m~~ 499 (636)
.++|..+.+.+..
T Consensus 219 ~~~a~~~~~~~~~ 231 (234)
T TIGR02521 219 VAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887765
No 59
>PF13041 PPR_2: PPR repeat family
Probab=99.24 E-value=1.2e-11 Score=85.22 Aligned_cols=50 Identities=20% Similarity=0.473 Sum_probs=45.6
Q ss_pred CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHc
Q 006672 92 KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (636)
Q Consensus 92 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (636)
||+++||++|++|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999998864
No 60
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=3.8e-08 Score=96.21 Aligned_cols=215 Identities=14% Similarity=0.096 Sum_probs=168.4
Q ss_pred HHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 239 GFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
.+.-+|+.-.|..-|+.....+ +..|--+...|.+..+.++....|.+..+.+ +-|+.+|-.-.....-.+++++|
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 3455788888888888776543 3347778889999999999999999998865 33555666666666667889999
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
..=|+..+... |.++..|--+.-+..+.++++++...|++..+ | -+..|+.....+..++++++|++.|+..++
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 99999988765 55677777777888899999999999999886 3 466899999999999999999999999988
Q ss_pred CCCCH-------HHHH--HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 393 TEPDG-------TVFL--AILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 393 ~~p~~-------~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
+.|+. .++. .++. +.=.+++..|.+++++..+ +.|. ...|..|.....+.|++++|+++|++.+.
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e---~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIE---LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHc---cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55551 1111 1111 1124789999999999875 5565 45799999999999999999999997664
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=5.9e-08 Score=92.88 Aligned_cols=392 Identities=13% Similarity=0.080 Sum_probs=242.5
Q ss_pred hHHHHHHHHhhcCCChHHHHHHhccCCCCC-cchHHHHHHHHHhCC-CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHc
Q 006672 64 RITTQLISSASLHKSIDYALSIFDHFTPKN-LHIFNVLIRGLAENS-HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVAS 141 (636)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 141 (636)
..-...+..|...++-++|.....+.++.- ..--|.|+.-+-+.| +-.++.--+.+....- | .... .|.+...
T Consensus 98 e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrec--p--~aL~-~i~~ll~ 172 (564)
T KOG1174|consen 98 EQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIREC--P--MALQ-VIEALLE 172 (564)
T ss_pred HHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhc--c--hHHH-HHHHHHH
Confidence 345566777777888888888888877443 233344443333332 2222222222222110 0 0000 1111111
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHH
Q 006672 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL--GKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKA 218 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A 218 (636)
.+ ...+...-..|-....+|+..+....+.+|+.+ ++-..|...+-.+... -++-|+.....+...+...|+.++|
T Consensus 173 l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a 251 (564)
T KOG1174|consen 173 LG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQA 251 (564)
T ss_pred Hh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHH
Confidence 10 011111111222222344444444455555543 3333333333222211 1256788888899999999999999
Q ss_pred HHHHhhCCCCChHHHHH---HHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006672 219 VELFGMMPKKNVASWVS---LIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (636)
Q Consensus 219 ~~~~~~m~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 292 (636)
+..|++....|+.+..+ ....+.+.|+.+.-..+...+-..+ ...|-.-+.......+++.|+.+-.+.++.+
T Consensus 252 ~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~- 330 (564)
T KOG1174|consen 252 EDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE- 330 (564)
T ss_pred HHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence 99999888666554333 2334567778777776666554433 3445555556667788999999988887753
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 369 (636)
+-+...+..-..++...++.++|.-.|....... |.+...|..|+..|...|++.+|.-+-+.... .+..+.+.+.
T Consensus 331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 2344455555566778899999998888877654 57888999999999999999988765544322 2333333332
Q ss_pred -HHHH-HcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 006672 370 -WGLA-IHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 370 -~~~~-~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 446 (636)
..+. ...--++|.+++++.+. +.|+. ...+.+..-|...|..+++..++++... ..||....+.|.+.+.-.
T Consensus 410 ~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~---~~~D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 410 TLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI---IFPDVNLHNHLGDIMRAQ 484 (564)
T ss_pred ceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh---hccccHHHHHHHHHHHHh
Confidence 1121 12234788888888877 78884 4667777888999999999999998875 578988999999999999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCch
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
+.+.+|++.|..+ +.++|+|..
T Consensus 485 Ne~Q~am~~y~~A----Lr~dP~~~~ 506 (564)
T KOG1174|consen 485 NEPQKAMEYYYKA----LRQDPKSKR 506 (564)
T ss_pred hhHHHHHHHHHHH----HhcCccchH
Confidence 9999999999854 467887643
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.23 E-value=2.8e-09 Score=114.49 Aligned_cols=244 Identities=11% Similarity=0.049 Sum_probs=170.1
Q ss_pred CHHHHHHHHhhCCCCC---hhhHHHHHHHHH---------hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 006672 245 DLKKAGELFEQMPEKG---VVSWTAMINGFS---------QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~~---~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 312 (636)
++++|...|++..+.| ...|..+..+|. ..+++++|...+++..+.+ +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 4677888888776533 445555554443 2345788999998888764 34666777777778888999
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
++|...++.+++.+ |.+...+..+...|...|++++|...+++..+ |+ ...+..++..+...|++++|+..++++.
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 99999999988876 56677788888889999999999999988775 33 2233444555667888999999999887
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Q 006672 390 YSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467 (636)
Q Consensus 390 ~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~ 467 (636)
+.. .|+ ...+..+..++...|+.++|...+.++.. ..|+ ....+.+...|.+.| ++|...++...+. .+..
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~-~~~~ 506 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQNS--ERALPTIREFLES-EQRI 506 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH-hhHh
Confidence 642 354 34456666777889999999999988764 2343 344556666777777 4777777764433 2334
Q ss_pred CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 468 PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 468 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
|.++.. +...|.-.|+-+.+..+ +++.+.|
T Consensus 507 ~~~~~~---~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 507 DNNPGL---LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hcCchH---HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 444332 66677788888887777 7777655
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=2.4e-09 Score=109.64 Aligned_cols=235 Identities=14% Similarity=0.141 Sum_probs=159.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHc-----C--CCC
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDA-----G-VRANDFTVV-SALSACAKVGALEAGVRVHNYISCN-----D--FGL 329 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~-----g-~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~ 329 (636)
...+...|...|+++.|..+++...+. | ..|...+.. .+...|...+++++|..+|+.++.. | .+.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 333555666666666666666555442 1 122332222 2455566666666666666665531 1 122
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC----------CChh-cHHHHHHHHHHcCChHHHHHHHHHHhHc---CCCC
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE----------KDLL-TWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEP 395 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p 395 (636)
-..+++.|..+|.+.|++++|...+++..+ +.+. ..+.++..+...+++++|..++++..+. -..+
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~ 361 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE 361 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence 234556666677788887777766665442 1222 4566777788889999999998887652 1233
Q ss_pred C----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc----C-CCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 396 D----GTVFLAILTACWYSGQVKLALNFFDSMRFDY----F-IEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 396 ~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
+ ..++..+...|.+.|++++|.++|+++++.. + ..+. ...++.|...|.+.+++.+|.++|.++..-...
T Consensus 362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~ 441 (508)
T KOG1840|consen 362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL 441 (508)
T ss_pred cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 3 2488999999999999999999999886532 1 1222 557889999999999999999999988766655
Q ss_pred cCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 466 LKPKH---PSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 466 l~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|.+ ..+|..|+.+|.+.|++++|.++.+...
T Consensus 442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 55554 4578899999999999999999988765
No 64
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=2.2e-09 Score=105.57 Aligned_cols=219 Identities=15% Similarity=0.028 Sum_probs=155.4
Q ss_pred CCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHH
Q 006672 274 NGEAEKALAMFFQMLDAG-VRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAA 350 (636)
Q Consensus 274 ~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 350 (636)
.+..+.++.-+.+++... ..|+ ...|......+...|+.+.|...|...++.. |.+...++.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 345677777777777532 2222 2446666667788888999988888888765 56788889999999999999999
Q ss_pred HHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 351 SLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 351 ~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
...|++..+ | +..+|..+..++...|++++|++.|++..+ ..|+..........+...++.++|...|++...
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~-- 193 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE-- 193 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Confidence 999988865 3 456888888899999999999999999988 566643222222233456789999999976553
Q ss_pred CCCCChhHHHHHHHHHHhcCCchHHHHHHHHH---HHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 428 FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS---FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
...|+...+ . ..+...|++.++ +.++.+ .+...++.|+.+.+|..++.+|.+.|++++|...|++..+.+
T Consensus 194 ~~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 223332222 2 233345666554 233332 233345567778899999999999999999999999998755
No 65
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=4.6e-11 Score=82.26 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=47.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68899999999999999999999999999999999999999999999874
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.20 E-value=8.1e-09 Score=98.19 Aligned_cols=193 Identities=12% Similarity=0.161 Sum_probs=140.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...+..+...|...|++++|...+++..+.. +.+...+..+...+...|+++.|.+.+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3456667777777777777777777776643 3345566666677777777777777777777654 4455666777777
Q ss_pred HhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHH
Q 006672 341 YAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVK 414 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 414 (636)
|...|++++|.+.|++... .....+..+...+...|++++|...+++..+ ..|+ ...+..+...+...|+++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHH
Confidence 7888888888888877654 1334666777788888999999999988887 4444 456777778888889999
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+|...+++.... .+.++..+..++..+...|+.++|..+.+.+
T Consensus 187 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 187 DARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999888753 3445667777888888889999888877644
No 67
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=3.2e-09 Score=114.03 Aligned_cols=213 Identities=14% Similarity=0.059 Sum_probs=165.5
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---------cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 275 GEAEKALAMFFQMLDAGVRAN-DFTVVSALSACAK---------VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 275 g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
+..++|+.+|++..+. .|+ ...+..+..++.. .+++++|...++.+++.. |.+...+..+..++...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3467999999999875 444 4455555444432 244789999999999876 66788889999999999
Q ss_pred CCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHH
Q 006672 345 GNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFF 420 (636)
Q Consensus 345 g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~ 420 (636)
|++++|...|++..+ | +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 999999999999775 3 456888899999999999999999999999 666643 3334455566789999999999
Q ss_pred HHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 421 DSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 421 ~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+++.+. ..| ++..+..+..+|...|++++|.+.+++. ....|.+......++..|...| ++|...++.+.+
T Consensus 430 ~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEI----STQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh----hhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 988742 234 4566788899999999999999998754 3556777777888888888888 478887777665
Q ss_pred C
Q 006672 500 R 500 (636)
Q Consensus 500 ~ 500 (636)
.
T Consensus 502 ~ 502 (553)
T PRK12370 502 S 502 (553)
T ss_pred H
Confidence 3
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.18 E-value=6.6e-07 Score=90.54 Aligned_cols=425 Identities=12% Similarity=0.132 Sum_probs=276.1
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCC-----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 006672 63 SRITTQLISSASLHKSIDYALSIFDHFT-----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSK 137 (636)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 137 (636)
+.+|-..+....++|++...+..|++.. ...-..|...+.-....+-++-++++|++.++ +.|.. -.--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P~~--~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAPEA--REEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCHHH--HHHHHH
Confidence 3456667777788899999999998643 23456788888888889999999999999887 34443 556677
Q ss_pred HHHccCChHHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 006672 138 SVASLSLLSLGRGLHCLIVKSG------VEYDAFVRVHLADMYVQLGKT---RGAFKVFDETPEKNKSESVLLWNVLING 208 (636)
Q Consensus 138 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~ 208 (636)
.++..+++++|.+.+...+... .+.+-..|+-+-+..++.-+. -....+++.+...-...-...|.+|.+-
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7888899999988887766331 245555676666666655332 2233445555433212224578888888
Q ss_pred HHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhc----------------C------CHHHHHHHHhhCCCC-----
Q 006672 209 CSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRK----------------G------DLKKAGELFEQMPEK----- 259 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~----------------g------~~~~A~~~~~~~~~~----- 259 (636)
|.+.|.+++|..+|++... ..+.-++.+.+.|+.- | +++-.+.-|+.+.++
T Consensus 258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l 337 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL 337 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence 9999999999988877653 1222233333333221 1 122333334443321
Q ss_pred ----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 260 ----------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN------DFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 260 ----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
++..|..-+. ...|+..+-...|.+..+. +.|. ...|..+...|-..|+++.|+.+|+...
T Consensus 338 NsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~ 414 (835)
T KOG2047|consen 338 NSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT 414 (835)
T ss_pred HHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence 2344544333 3456778888888888763 3332 2356778888889999999999999998
Q ss_pred HcCCCCc---hhHHHHHhhHHhhcCCHHHHHHHHhhccC-C--------------------ChhcHHHHHHHHHHcCChH
Q 006672 324 CNDFGLK---GAIGTALVDMYAKCGNIEAASLVFGETKE-K--------------------DLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 324 ~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~g~~~ 379 (636)
+..++.- ..+|..-.++-.+..+++.|.++.++... | +...|...+..--..|-++
T Consensus 415 ~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfe 494 (835)
T KOG2047|consen 415 KVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFE 494 (835)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHH
Confidence 7665443 56777778888888999999998887542 1 3346777777777778889
Q ss_pred HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh---cCCchHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR---VGQDSQGYQNS 456 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~ 456 (636)
....+|+++++..+.......| ...-+-...-++++.+.+++-+.-+..+---+.|+..+.-+.+ .-.++.|..+|
T Consensus 495 stk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 495 STKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9999999998865543222222 2222334566788889888776533333335677776655443 34688999999
Q ss_pred HHHHHHHhccCCC-Cc-hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 457 QNSFTKLLQLKPK-HP-SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 457 ~~~~~~~~~l~p~-~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+++.+ .-|+ +. ..|...+..--+-|.-..|+.++++...
T Consensus 574 EqaL~----~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 574 EQALD----GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHh----cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 97764 3343 32 2344444445556888888889888654
No 69
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.17 E-value=8.2e-09 Score=107.51 Aligned_cols=241 Identities=11% Similarity=0.076 Sum_probs=130.8
Q ss_pred HHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006672 115 SHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194 (636)
Q Consensus 115 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 194 (636)
.++-.|...|+.|+.+||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++....+.++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35566777788888888888888888888888777 7777777666777777788877777777766554
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhh-CC-------------------------CCChHHHHHHHHHHHhcCCHHH
Q 006672 195 KSESVLLWNVLINGCSKIGYLRKAVELFGM-MP-------------------------KKNVASWVSLIDGFMRKGDLKK 248 (636)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------------------------~~~~~~~~~li~~~~~~g~~~~ 248 (636)
.|...+|..|..+|.+.||... ++..++ |. ......-.+.+....-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 6677788888888888887544 222222 11 0000111222333334455555
Q ss_pred HHHHHhhCCCCC-hhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 249 AGELFEQMPEKG-VVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 249 A~~~~~~~~~~~-~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
+.+++..++... ..+.-..+.-+.... .+++-..+.+...+ .|++.+|..++.+....|+.+.|..++..|.+.|
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 555555554211 000000122222111 12222222222211 3566666666666666666666666666666666
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CChhcHHHHHHHHHH
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAI 374 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~ 374 (636)
++.+..-+-.|+-+ .++..-++.++..|.+ |+..|+.-.+..+..
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~ 283 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLS 283 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhc
Confidence 66665555555433 4444444444444432 455555544444444
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-07 Score=98.20 Aligned_cols=423 Identities=14% Similarity=0.073 Sum_probs=241.8
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 006672 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFTPK---NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (636)
Q Consensus 58 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (636)
.+..++.+|..|.-++..+|+++.+-+.|++..+- ....|+.+-..|...|.-..|+.+.+.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 34568899999999999999999999999876532 345799999999999999999999987665332354433333
Q ss_pred H-HHHHH-ccCChHHHHHHHHHHHHhC--C--CCChhHHHHHHHHHHhc-----------CChHHHHHHHhhCCCCCCCC
Q 006672 135 V-SKSVA-SLSLLSLGRGLHCLIVKSG--V--EYDAFVRVHLADMYVQL-----------GKTRGAFKVFDETPEKNKSE 197 (636)
Q Consensus 135 l-l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~ 197 (636)
+ -+.|. +.+..+++...-.+++... . ...+..|-.+.-+|... ..-.++.+.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3 34444 4567777777666666521 1 11222333333334322 11234555555554443 33
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHH---HHHHH
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWT---AMING 270 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~ 270 (636)
|..+.-.+.--|+..++.+.|.+..++.. ..+...|..|.-.+...+++.+|+.+.+...+.-..-++ .-+..
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i 556 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHI 556 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhh
Confidence 33333333334555566666666555544 234455555555566666666666665543321100000 00111
Q ss_pred HHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-c-CCCCchhHHHHHhhHHh---h
Q 006672 271 FSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGALEAGVRVHNYISC-N-DFGLKGAIGTALVDMYA---K 343 (636)
Q Consensus 271 ~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~li~~~~---~ 343 (636)
-..-++.++|+.....+... ...|-..+ ++-....+....+.- . .....+.++..+..... +
T Consensus 557 ~~~~~~~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~ 625 (799)
T KOG4162|consen 557 ELTFNDREEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLK 625 (799)
T ss_pred hhhcccHHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhh
Confidence 12234555555544444321 00000000 000000011110000 0 00111122222211111 1
Q ss_pred cCCHHHHHHHHhhccCCC------hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 344 CGNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
.-..+.....+...+.|+ ...|......+...++.++|...+.+... +.|- ...|......+...|..++|
T Consensus 626 ~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 626 SAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred hcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 111111111111222222 23566777788889999999988888877 5554 34555555677788999999
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHH--HHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQ--NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.+.|..... +.|+ +....++..++.+.|+..-|.. +.. ..++++|.++..|..|+.++.+.|+.++|.+.
T Consensus 704 ~~af~~Al~---ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~----dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec 776 (799)
T KOG4162|consen 704 KEAFLVALA---LDPDHVPSMTALAELLLELGSPRLAEKRSLLS----DALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC 776 (799)
T ss_pred HHHHHHHHh---cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH----HHHhhCCCCHHHHHHHHHHHHHccchHHHHHH
Confidence 999988764 6665 6788999999999998777766 555 44578999999999999999999999999999
Q ss_pred HHHHHhCC
Q 006672 494 RTLMQRRS 501 (636)
Q Consensus 494 ~~~m~~~g 501 (636)
|....+..
T Consensus 777 f~aa~qLe 784 (799)
T KOG4162|consen 777 FQAALQLE 784 (799)
T ss_pred HHHHHhhc
Confidence 99887654
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=1.1e-06 Score=88.35 Aligned_cols=422 Identities=11% Similarity=0.058 Sum_probs=204.1
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHH--HHHHHH--hCCCchHHHHHHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNV--LIRGLA--ENSHFQSCISHFVF 119 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--li~~~~--~~g~~~~A~~~~~~ 119 (636)
+++|.+....++..+ +-++.++.+=+-++.+.+++++|+.+.+.-... .+++. +=.+|+ +.+..++|+..++
T Consensus 28 ~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 28 YEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHHHHHHHh-
Confidence 888888888888876 446666667777788888899998766643321 12222 245554 5788888888877
Q ss_pred hHHCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCC
Q 006672 120 MLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEY-DAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSE 197 (636)
Q Consensus 120 m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 197 (636)
|..++.. +...-...|.+.+++++|..++..+.+.+.+. +...-..++.+-. .-.+. +.+..+. .|
T Consensus 104 ----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~---v~ 171 (652)
T KOG2376|consen 104 ----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPE---VP 171 (652)
T ss_pred ----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccC---CC
Confidence 3334333 45445566788888999999998888876321 2222222222111 11111 2333332 11
Q ss_pred ChhhHHHH---HHHHHhcCChHHHHHHHhhCC--------CCC-----hH-----HHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 198 SVLLWNVL---INGCSKIGYLRKAVELFGMMP--------KKN-----VA-----SWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 198 ~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
..+|..+ ...+...|++.+|+++++... ..| .. +-.-|...+-..|+.++|..++...
T Consensus 172 -e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 172 -EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred -cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3344433 334566788888888877662 111 11 1223334455566666666666655
Q ss_pred CCCC-------hhhHHHHHHHHHhCCChHH-HHHHHHHHHHCCCC----------CCHHHHHHHHHHHHhcCCcHHHHHH
Q 006672 257 PEKG-------VVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVR----------ANDFTVVSALSACAKVGALEAGVRV 318 (636)
Q Consensus 257 ~~~~-------~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~----------p~~~t~~~ll~~~~~~~~~~~a~~~ 318 (636)
...+ .+.-|.|+..-....-++. ++..++........ -..+..+..+-. ...+.-+.+.++
T Consensus 251 i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~-l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA-LFTNKMDQVREL 329 (652)
T ss_pred HHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHH
Confidence 4322 1233444433333333331 22222221110000 000000000000 011122222222
Q ss_pred HHHHHHcCCCCchhHHHHHhhHHhhc--CCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHHH------
Q 006672 319 HNYISCNDFGLKGAIGTALVDMYAKC--GNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFK------ 386 (636)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~------ 386 (636)
...+. +..| ...+..++....++ .....|.+++....+ ...+.--.++......|+++.|++++.
T Consensus 330 ~a~lp--~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~ 406 (652)
T KOG2376|consen 330 SASLP--GMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESW 406 (652)
T ss_pred HHhCC--ccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh
Confidence 21111 1111 12222333222221 123444444444333 123344445555566677777777766
Q ss_pred --HHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC-CCChhHHHHH----HHHHHhcCCchHHHHHHHHH
Q 006672 387 --KMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPSVKHHTVV----VNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 387 --~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~ 459 (636)
...+.+..| .+...+..-+.+.++-+.|..++.+....+.. .+......++ +..--+.|+-++|..+++
T Consensus 407 ~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le-- 482 (652)
T KOG2376|consen 407 KSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE-- 482 (652)
T ss_pred hhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH--
Confidence 444433333 33334445556666666666666666532221 1222222222 223335677777776666
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 460 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.+++.+|+|......+..+|++.. .+.|..+
T Consensus 483 --el~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 483 --ELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred --HHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 344667777777777777776543 4444443
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.09 E-value=1.7e-08 Score=103.50 Aligned_cols=231 Identities=12% Similarity=0.069 Sum_probs=170.2
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc-----C--CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------C
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-----D--FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K 360 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~ 360 (636)
-..|...+...|...|+++.|..+++..++. | .+.=....+.+..+|...+++++|..+|+++.. +
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456777889999999999999999987754 2 112223345578899999999999999988764 1
Q ss_pred ----ChhcHHHHHHHHHHcCChHHHHHHHHHHhH-----cCCCCC-H-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-
Q 006672 361 ----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPD-G-TVFLAILTACWYSGQVKLALNFFDSMRFDYF- 428 (636)
Q Consensus 361 ----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~-~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 428 (636)
-..+++.|..+|...|++++|...+++..+ .|..+. . ..++.+...|...+.+++|..+++...+.+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 234788888999999999999888888654 122222 2 2566777789999999999999987764332
Q ss_pred -CCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC----CCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 429 -IEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK----PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 429 -~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..++ ..+|+.|..+|...|++++|+++++++.++.-+.. +.....++.|+..|.+.+++++|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 2222 56899999999999999999999999988875544 33345788999999999999999999998765
Q ss_pred CCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHHHHHH
Q 006672 500 RSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGA 542 (636)
Q Consensus 500 ~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~ 542 (636)
-. +.-| -+||.....|..|..+.+.|
T Consensus 438 i~--~~~g---------------~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 438 IM--KLCG---------------PDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred HH--HHhC---------------CCCCchHHHHHHHHHHHHHc
Confidence 32 1110 12666666666655555543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=8.6e-07 Score=85.12 Aligned_cols=264 Identities=11% Similarity=0.032 Sum_probs=185.3
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHH---HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAM---INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
..|+.....+...+...|+.++|...|++...-|..+...| ...+.+.|+.++...+...+.... .-....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 45677778888888888888888888887765554433332 233456777777777777766432 12222232233
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHH
Q 006672 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~ 380 (636)
...-...+++.|..+-+..++.+ +.+...+-.-...+...|+.++|.-.|+.... -+..+|..|+.+|...|++.+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 33345567777777777776554 44555555555677788999999988887653 478899999999999999999
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHH-HHHH-hcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAIL-TACW-YSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
|..+-+...+. ...+..+...+. ..|. ...--++|.+++++..+ ++|+ ...-+.+..++.+.|+.++++.+++
T Consensus 387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 99888776652 222344554442 2333 23345788899887763 6777 4566778899999999999999998
Q ss_pred HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 458 NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 458 ~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.. ..-| |....+.|+..+.....+.+|...|....+.+
T Consensus 463 ~~L----~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 463 KHL----IIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHH----hhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 654 3345 77889999999999999999999999887754
No 74
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.05 E-value=6.7e-07 Score=82.16 Aligned_cols=307 Identities=12% Similarity=0.090 Sum_probs=141.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHH-HHHHHH
Q 006672 97 FNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRV-HLADMY 174 (636)
Q Consensus 97 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~ 174 (636)
+++.+..+.+..++..|++++..-.+.. | +....+.+-..|....++..|...++++-..- |...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 3444444555556666666655544432 3 33444444444455555555655555554432 2221111 112233
Q ss_pred HhcCChHHHHHHHhhCCCCCCCCChhhHHHHH--HHHHhcCChHHHHHHHhhCC-CCChHHHHHHHHHHHhcCCHHHHHH
Q 006672 175 VQLGKTRGAFKVFDETPEKNKSESVLLWNVLI--NGCSKIGYLRKAVELFGMMP-KKNVASWVSLIDGFMRKGDLKKAGE 251 (636)
Q Consensus 175 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~-~~~~~~~~~li~~~~~~g~~~~A~~ 251 (636)
.+.+.+.+|+++...|... ++...-..-+ ......+++..+..++++.. +.+..+.+...-...+.|+++.|.+
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 3455555555555555421 1111111111 11223444444444444444 2333344444444444455555544
Q ss_pred HHhhCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 252 LFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV-VSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 252 ~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
-|+...+-+ ...||.-+ +..+.|+++.|+++..+..+.|++-.+..- ...... .....+..-..++...
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sa---- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSA---- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHH----
Confidence 444443211 23333222 222334444455544444444432111000 000000 0000000000000000
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHH
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVF 400 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 400 (636)
-+..+|.-...+.+.|+.+.|.+.+-.|+.+ |++|...+.-.= ..+++.+..+-++-+... .|- ..||
T Consensus 240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~--nPfP~ETF 313 (459)
T KOG4340|consen 240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ--NPFPPETF 313 (459)
T ss_pred ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc--CCCChHHH
Confidence 0122333344467889999999999999863 666665554322 245566666666666663 443 5699
Q ss_pred HHHHHHHHhcCcHHHHHHHHHH
Q 006672 401 LAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
..++-.|++..-++.|-.++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhh
Confidence 9999999999988888887754
No 75
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.5e-08 Score=93.94 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=186.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcC
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV-VSALSACAKVG 310 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~~~~~~~ 310 (636)
+-+..+|.+.|.+.+|.+.|+.... +-+.||-.|-.+|.+..+++.|+.+|.+-.+. .|-.+|| ..+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 5677888888999999988887653 45788988999999999999999999988875 4555555 45667788889
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (636)
+.+.+.++++.+.+.. +.+++...++...|.-.++.|.|.+.++++.+ .+...|+.+.-+|.-.++++-++.-|++
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 9999999999999875 67788888888889999999999999998876 5777899999999999999999999999
Q ss_pred HhHcCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 388 MMYSGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 388 m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
....-..|+. ..|..+.......|++..|.+.|+-... .-....+.++.|.-+-.|.|++++|..+++.+..
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 9886555663 4788888888889999999999998764 2334578899999999999999999999986653
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=1.5e-06 Score=90.54 Aligned_cols=295 Identities=11% Similarity=0.031 Sum_probs=165.1
Q ss_pred HHhhcCCChHHHHHHhccCCC--CCcc-hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH----c--
Q 006672 71 SSASLHKSIDYALSIFDHFTP--KNLH-IFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA----S-- 141 (636)
Q Consensus 71 ~~~~~~g~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~-- 141 (636)
..+...|+++.|+..++.-.. .|.. ........+.+.|+.++|..+|..+.+.+ |+...|-..+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445677888888888865442 2333 34455567778888888888888888753 77777766655554 1
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006672 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 220 (636)
..+.+...++++.+...- |.....-.+.-.+.....+ ..+...+..+...|+|+ +++.+-..|......+-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 123455566666665543 2222211121112111122 23333444455445332 33333333332222211111
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHH-hh-CCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-
Q 006672 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELF-EQ-MPEKGV--VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN- 295 (636)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~-~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 295 (636)
+ +..|...-........- .. -..|.. .++.-+...|-..|++++|++++++.++. .|+
T Consensus 165 l---------------~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 165 L---------------VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred H---------------HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 1 11111110000000000 00 011222 24455677788888888888888888875 344
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh----------hcH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL----------LTW 365 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------~~~ 365 (636)
...|..-...+-+.|++.+|.+.++...+.. ..|..+-+-.+..+.++|++++|.+++.....++. ..|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 5567777777888888888888888887765 45667777777788888888888888776665431 123
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 366 --TAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 366 --~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.....+|.+.|++..|++-|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345678888888888776665544
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=1e-05 Score=82.40 Aligned_cols=437 Identities=11% Similarity=0.060 Sum_probs=216.3
Q ss_pred HHHHHHHhcCC--hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhC
Q 006672 33 HIISLIHSSNS--TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAEN 107 (636)
Q Consensus 33 ~~~~~l~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 107 (636)
-|-.++...-. ...+..+.+.+++ +.+-.+.+....--.+...|+.++|........ ..+.+.|..+.-.+...
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 34555554433 5666666666666 333333333333334566789999988877554 44667899888888888
Q ss_pred CCchHHHHHHHHhHHCCCCCCcc-cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 006672 108 SHFQSCISHFVFMLRLSVRPNRL-TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKV 186 (636)
Q Consensus 108 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 186 (636)
.++++|+..|+.... +.||.. .|.-+--.-++.++++.......++.+.. +.....|..+..++.-.|+...|..+
T Consensus 89 K~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 446553 33322223345677777777666666652 34455677777777788888888888
Q ss_pred HhhCCCCC-CCCChhhHHHHH------HHHHhcCChHHHHHHHhhCCCC--C-hHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 187 FDETPEKN-KSESVLLWNVLI------NGCSKIGYLRKAVELFGMMPKK--N-VASWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 187 ~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
.++..+.. -.|+...+.-.. ....+.|..++|++-+..-... | ...--.-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 87765443 134444443332 2334456666666555444321 1 112223334455556666666665555
Q ss_pred CCC--ChhhHH-HHHHHHHhCCChHHHH-HHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCcHHHHHHHHHHHHcCCCCch
Q 006672 257 PEK--GVVSWT-AMINGFSQNGEAEKAL-AMFFQMLDAGVRANDFTVV-SALSACAKVGALEAGVRVHNYISCNDFGLKG 331 (636)
Q Consensus 257 ~~~--~~~~~~-~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 331 (636)
..+ |..-|+ .+..++.+-.+.-+++ .+|....+. .|...... .=++......-.+....++....+.|+++
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~-- 321 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS-- 321 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc--
Confidence 432 222222 2222332222222222 334333321 11110000 00111111111222233333344444332
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH--HHHHHHHHHHh
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWY 409 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~ 409 (636)
++..+...|-.-...+ ++++ ++..|...=.........+.- .--.|... |+..+...+-+
T Consensus 322 -vf~dl~SLyk~p~k~~----~le~-----------Lvt~y~~~L~~~~~f~~~D~~--~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 322 -VFKDLRSLYKDPEKVA----FLEK-----------LVTSYQHSLSGTGMFNFLDDG--KQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred -hhhhhHHHHhchhHhH----HHHH-----------HHHHHHhhcccccCCCccccc--ccCCchHHHHHHHHHHHHHHH
Confidence 2222222221111000 1110 001110000000000000000 00133333 34445556667
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
.|+++.|..+.+..+. ..|+ ++.|..-...+...|.+++|..+++++. +++-.|...-.--++-..++.+.+
T Consensus 384 ~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~----elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ----ELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred cccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH----hccchhHHHHHHHHHHHHHccccH
Confidence 7777777777776652 3454 5566666677777777777777776443 445444443334555556677777
Q ss_pred HHHHHHHHHHhCCC
Q 006672 489 DVARVRTLMQRRSI 502 (636)
Q Consensus 489 ~A~~~~~~m~~~g~ 502 (636)
+|.++.....+.|.
T Consensus 457 eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 457 EAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHhhhccc
Confidence 77777776666553
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=4e-08 Score=87.20 Aligned_cols=164 Identities=16% Similarity=0.125 Sum_probs=137.8
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 408 (636)
+..-|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++... +.|+ ....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3355677889999999999999988863 345888999999999999999999999998 6776 457777777778
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
..|.+++|.+.|++...+-...--..+|..++-+-.+.|+.+.|.+.++++. +++|+.+.+...+.....+.|++-
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL----~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRAL----ELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHH----HhCcCCChHHHHHHHHHHhcccch
Confidence 8899999999999998644444446788999999999999999999998554 679999999999999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 006672 489 DVARVRTLMQRRSI 502 (636)
Q Consensus 489 ~A~~~~~~m~~~g~ 502 (636)
.|...++.....+.
T Consensus 191 ~Ar~~~~~~~~~~~ 204 (250)
T COG3063 191 PARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHHhccc
Confidence 99999998887764
No 79
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=2.9e-06 Score=79.93 Aligned_cols=383 Identities=12% Similarity=0.126 Sum_probs=215.1
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHH-HHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006672 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS-KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (636)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 179 (636)
+.-+..+.++..|+.+++--...+-. .......-| ..+...|++++|...+..+... -.++..++..|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHH
Confidence 66777788999999998876543321 112333333 3445889999999999888774 36666777777777777889
Q ss_pred hHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 006672 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (636)
Q Consensus 180 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 259 (636)
+.+|..+-...+ .+...-..|...-.+.++-++-..+-..+. ....-.-+|..+.-..-.+.+|++++.++...
T Consensus 107 Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~Lq-D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 107 YIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQ-DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHh-hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999988877654 233344445555556666555555444433 22344445555555556788999999988754
Q ss_pred C--hhhHHH-HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c--CCcHH--HHH----------HHH
Q 006672 260 G--VVSWTA-MINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--V--GALEA--GVR----------VHN 320 (636)
Q Consensus 260 ~--~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~--~~~~~--a~~----------~~~ 320 (636)
+ ....|. +.-+|.+..-++-+.+++.--.+. -||+. +..=+.+|.. . |+..+ -.. .-+
T Consensus 181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdSt-iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDST-IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcH-HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 4 334443 345677777788787777766654 33432 2222222211 1 11110 001 111
Q ss_pred HHHHcCC-----------------CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcH------------------
Q 006672 321 YISCNDF-----------------GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTW------------------ 365 (636)
Q Consensus 321 ~~~~~~~-----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------ 365 (636)
.+.+.++ ..-+..-..|+-.|.+.+++.+|..+.++....++.-|
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSre 337 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSRE 337 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHH
Confidence 1221111 01122334566678889999999888887765332222
Q ss_pred -------------------------HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 006672 366 -------------------------TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFF 420 (636)
Q Consensus 366 -------------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 420 (636)
.+|.+.+.-..++++.+..+.....--.. |..--..+..|.+..|.+.+|+++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHH
Confidence 22233333333334444443333332111 1111223456667777888888877
Q ss_pred HHhHhhcCCCCChhHH-HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc-hhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 421 DSMRFDYFIEPSVKHH-TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP-SSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 421 ~~m~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
-++.. ..+ .+..+| ..|...|.+.++.+-|.+++-++- .|.+. .....+++-|.+.+.+=-|.+.|+.+.
T Consensus 417 ~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 417 IRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTN------TPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred hhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 66542 222 233344 445577788888888877764211 12222 234456677778888777788888777
Q ss_pred hCCCc
Q 006672 499 RRSIK 503 (636)
Q Consensus 499 ~~g~~ 503 (636)
..+..
T Consensus 489 ~lDP~ 493 (557)
T KOG3785|consen 489 ILDPT 493 (557)
T ss_pred ccCCC
Confidence 65443
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=1.8e-05 Score=79.78 Aligned_cols=407 Identities=11% Similarity=0.095 Sum_probs=250.5
Q ss_pred HHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH--HHHHHH--
Q 006672 68 QLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF--VSKSVA-- 140 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--ll~~~~-- 140 (636)
+=++.+...|++++|.+..+++. +.+...+..-+-++.+.+++++|+.+.+.-.. ..+++. +=++|+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 34566778899999998887665 45666677777789999999999966554221 111222 235554
Q ss_pred ccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCCh--hhHHHHHHHHHhcCChHH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV--LLWNVLINGCSKIGYLRK 217 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~ 217 (636)
+.+..++|...+. |..++ ..+...-...+.+.|++++|.++|+.+.+.+ .++. ..-..++.+-. .-.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~-~dd~d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN-SDDQDEERRANLLAVAA----ALQ 160 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHH----hhh
Confidence 7788999988887 33333 3355556677889999999999999997555 2221 12222222211 112
Q ss_pred HHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhC--------CCCC-----h-----hhHHHHHHHHHhCCC
Q 006672 218 AVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQM--------PEKG-----V-----VSWTAMINGFSQNGE 276 (636)
Q Consensus 218 A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~-----~-----~~~~~li~~~~~~g~ 276 (636)
+. +.+... +.+-..+......+...|++.+|+++++.. .+.| . ..--.|...+...|+
T Consensus 161 ~~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 161 VQ-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred HH-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 21 233333 233344445556678899999999999877 2221 1 123345667788999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHH---HHHHHhcCCcHH--------------HHHHHHHHHHcCCCCchhHHHHHhh
Q 006672 277 AEKALAMFFQMLDAGVRANDFTVVSA---LSACAKVGALEA--------------GVRVHNYISCNDFGLKGAIGTALVD 339 (636)
Q Consensus 277 ~~~A~~l~~~m~~~g~~p~~~t~~~l---l~~~~~~~~~~~--------------a~~~~~~~~~~~~~~~~~~~~~li~ 339 (636)
.++|..++...+... ++|....... |.+.....++.. +......+. .........-+.++.
T Consensus 240 t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLS-KKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 999999999998875 4554322222 122222211111 111111111 111112223355666
Q ss_pred HHhhcCCHHHHHHHHhhccCCC-hhcHHHHHH-HHHH-cCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhcCcHH
Q 006672 340 MYAKCGNIEAASLVFGETKEKD-LLTWTAMIW-GLAI-HGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVK 414 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~-~~~~-~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~ 414 (636)
+|. +..+.+.++-...+... ...+.+++. ++.. .....+|.+++...-+ -.|.. ......+......|+++
T Consensus 318 l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~ 393 (652)
T KOG2376|consen 318 LFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPE 393 (652)
T ss_pred HHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHH
Confidence 664 55678888887777632 333444443 3322 2347788888887766 34443 34445556677899999
Q ss_pred HHHHHHH--------HhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHH
Q 006672 415 LALNFFD--------SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP---SSYVLLSNIYAA 483 (636)
Q Consensus 415 ~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~---~~~~~l~~~~~~ 483 (636)
.|.+++. .+.. .+ -.+.+-..++.+|.+.+.-+.|.+++.++......-.+... ..+..++..-.+
T Consensus 394 ~A~~il~~~~~~~~ss~~~-~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 394 VALEILSLFLESWKSSILE-AK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLR 470 (652)
T ss_pred HHHHHHHHHhhhhhhhhhh-hc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHh
Confidence 9999998 5542 33 34455577889999999999999999988876655444332 234445555667
Q ss_pred cCChhHHHHHHHHHHhC
Q 006672 484 EGRWKDVARVRTLMQRR 500 (636)
Q Consensus 484 ~g~~~~A~~~~~~m~~~ 500 (636)
.|+-++|..+++++.+.
T Consensus 471 ~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKF 487 (652)
T ss_pred cCchHHHHHHHHHHHHh
Confidence 89999999999998873
No 81
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-06 Score=90.93 Aligned_cols=418 Identities=16% Similarity=0.099 Sum_probs=260.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC--C--CC-cchHHHHHHHHHh-
Q 006672 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--P--KN-LHIFNVLIRGLAE- 106 (636)
Q Consensus 33 ~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~--~~-~~~~~~li~~~~~- 106 (636)
.+.-.+..||.++.+.+.|++....-+. ....|+.+-..|..+|.-..|..+++.-. . |+ +..+-..-..|.+
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~ 406 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIER 406 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhc
Confidence 4566677788899999999988775433 55678889999999999999999997543 2 22 2323222233433
Q ss_pred CCCchHHHHHHHHhHHC--CCC--CCcccHHHHHHHHHc----cC-------ChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006672 107 NSHFQSCISHFVFMLRL--SVR--PNRLTYPFVSKSVAS----LS-------LLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (636)
Q Consensus 107 ~g~~~~A~~~~~~m~~~--g~~--p~~~t~~~ll~~~~~----~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li 171 (636)
.+..++++.+-.+.... +.. .....|..+--+|.. .. ...++.+.++..++.+. .|+.+.-.+.
T Consensus 407 l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~~if~la 485 (799)
T KOG4162|consen 407 LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLA 485 (799)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 46777877777766651 111 122233333333321 11 13455667777766552 2333333344
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHH
Q 006672 172 DMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKK 248 (636)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~ 248 (636)
--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+.... .|......-+..-...++.++
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHH
Confidence 56888999999999999988875578899999999999999999999999877652 122222222222233556666
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHH
Q 006672 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVG---ALEAGVRVHNYIS 323 (636)
Q Consensus 249 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~ 323 (636)
|......+.. .|... .+..+.++-...+++...+.-. ...-...|+..+..-....+ ..+.. +.
T Consensus 566 ~l~t~~~~L~----~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp 634 (799)
T KOG4162|consen 566 ALDTCIHKLA----LWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LP 634 (799)
T ss_pred HHHHHHHHHH----HHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cC
Confidence 6555444321 11110 0111222223333333333211 11111223332222221111 01100 11
Q ss_pred HcCCC--Cc------hhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 324 CNDFG--LK------GAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 324 ~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
+.... |+ ...|....+.+.+.+..++|...+.+...- ....|......+...|+.++|.+.|.....
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-- 712 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-- 712 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--
Confidence 11111 11 235566777888889999998777776653 345677777778889999999999999988
Q ss_pred CCCCHH-HHHHHHHHHHhcCcHHHHHH--HHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 393 TEPDGT-VFLAILTACWYSGQVKLALN--FFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 393 ~~p~~~-t~~~ll~a~~~~g~~~~a~~--~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
+.|+.+ ...++...+...|+..-|.. ++..+.+ +.| +.+.|-.++..+.+.|+.++|.+.|..+. ++++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr---~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~----qLe~ 785 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR---LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL----QLEE 785 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH----hhcc
Confidence 889854 88888899999998777777 8888875 444 58899999999999999999999998554 5666
Q ss_pred CCch
Q 006672 469 KHPS 472 (636)
Q Consensus 469 ~~~~ 472 (636)
.+|.
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 5553
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.94 E-value=2.6e-06 Score=87.26 Aligned_cols=241 Identities=15% Similarity=0.146 Sum_probs=130.1
Q ss_pred HHhcCCHHHHHHHHhhCCCCChh--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEKGVV--SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVR 317 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 317 (636)
.....++.+|+.+++.+...++. -|..+.+.|...|+++.|.++|-+.- .+...|..|.+.|+++.|.+
T Consensus 742 ai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 34455666666677666655533 35566677777777777777764321 23445566777777777766
Q ss_pred HHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-
Q 006672 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD- 396 (636)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~- 396 (636)
+-.+.. |.......|-+-..-+-+.|++.+|+++|-.+.+|+. .|..|-++|..+..+++.++- .|+
T Consensus 813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~ 880 (1636)
T KOG3616|consen 813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDH 880 (1636)
T ss_pred HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----Chhh
Confidence 654432 3334455555555666667777777777776666654 355666666666666665542 222
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHHhH-----------------------hhcCCCCC---hhHH------HHHHHHH
Q 006672 397 -GTVFLAILTACWYSGQVKLALNFFDSMR-----------------------FDYFIEPS---VKHH------TVVVNLL 443 (636)
Q Consensus 397 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~-----------------------~~~~~~p~---~~~~------~~l~~~~ 443 (636)
..|-..+..-+...|++..|..-|-+.. .+.|-... ...| .+-+.++
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkll 960 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLL 960 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHH
Confidence 1233333333444444444443332221 01111100 0111 1234455
Q ss_pred HhcCCchHHHHHHH------HHHHH-HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 444 SRVGQDSQGYQNSQ------NSFTK-LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 444 ~~~g~~~~A~~~~~------~~~~~-~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+.|.+++|.++-- -+.+- -+....+-+....-++.-+...|++++|-+.+-+..+.+
T Consensus 961 nk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 961 NKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred HhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 55666655555432 00000 011122345567777888888999999988877766544
No 83
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=2.8e-07 Score=81.93 Aligned_cols=189 Identities=13% Similarity=0.127 Sum_probs=149.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
+...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++.. +.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45567788999999999999999988864 4456778888888888999999999998888765 667788888888888
Q ss_pred hcCCHHHHHHHHhhccC-C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 343 KCGNIEAASLVFGETKE-K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
..|++++|...|++... | ...+|..+.-+..+.|+.+.|...|++.++ ..|+ +.+...+.......|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHH
Confidence 88999999988888765 3 345788888888888999999999988888 5666 55777788888888888888
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
..+++.... +..++.+.....|..-.+.|+-+.|.+.=.
T Consensus 193 r~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 193 RLYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 888888774 334777777777777777888777665543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=4.2e-07 Score=89.41 Aligned_cols=198 Identities=9% Similarity=-0.081 Sum_probs=121.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...|...|+.++|...|++..+.. +.+...|..+...+...|+++.|...++..++.. |.+...+..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456666777777777777777777777653 3355667777777777777777777777777654 44556667777777
Q ss_pred hhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q 006672 342 AKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
...|++++|.+.|+...+ |+..........+...++.++|+..|++.... ..|+...+ .+ .....|+..++ +.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HH
Confidence 777888888877777664 22111111112233466788888888665542 23332221 22 22234554443 34
Q ss_pred HHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 420 FDSMRFDYFIEP-----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 420 ~~~m~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
++.+.+.....| ..+.|..++..+.+.|++++|...|+++. +++|.|
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al----~~~~~~ 269 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL----ANNVYN 269 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HhCCch
Confidence 444443221111 24678888999999999999999988655 566643
No 85
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2e-06 Score=85.75 Aligned_cols=399 Identities=12% Similarity=0.063 Sum_probs=223.4
Q ss_pred HhhcCCChHHHHHHhccC---CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHccCChHH
Q 006672 72 SASLHKSIDYALSIFDHF---TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR-LTYPFVSKSVASLSLLSL 147 (636)
Q Consensus 72 ~~~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~ 147 (636)
.....|+++.|...|-.. .++|-+.|..-..+|+..|++++|+.--.+-++ +.|+. ..|+-.-.++.-.|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHH
Confidence 345577888888887533 356777777777788888888887776665555 45653 356666677777788888
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH-HHHhhCCCCCCCCChhhHHH-----HHHHHHhcCChHHHHHH
Q 006672 148 GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAF-KVFDETPEKNKSESVLLWNV-----LINGCSKIGYLRKAVEL 221 (636)
Q Consensus 148 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~ 221 (636)
|...|..-++.. +.|...++-|.+++. .+.+. +.|. +...|.. +.+.+.....+..-++.
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~~~~~~---------~p~~~~~l~~~p~t~~~~~~~~~~~~l~~ 154 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAADQLFT---------KPYFHEKLANLPLTNYSLSDPAYVKILEI 154 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHhhhhcc---------CcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence 888877776653 445556666666661 11111 1110 1111111 11111111111111111
Q ss_pred HhhCCC------CChHHHHHHHHHH-------HhcCCHHHHHHHH--hhCCCC-----C----------hhhHHHHHHHH
Q 006672 222 FGMMPK------KNVASWVSLIDGF-------MRKGDLKKAGELF--EQMPEK-----G----------VVSWTAMINGF 271 (636)
Q Consensus 222 ~~~m~~------~~~~~~~~li~~~-------~~~g~~~~A~~~~--~~~~~~-----~----------~~~~~~li~~~ 271 (636)
+++-.. .|.....++.... ...|....+...- ..+.++ | ..-...+..+.
T Consensus 155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa 234 (539)
T KOG0548|consen 155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA 234 (539)
T ss_pred hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence 111110 0111111110000 0000000000000 000000 0 12345566777
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc------hhHHHHHhhHHhhcC
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK------GAIGTALVDMYAKCG 345 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g 345 (636)
.+..+++.|++-+....+.. -+..-++....++...|........-...++.|...- ......+..+|.+.+
T Consensus 235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 77777888888777777653 2333344445556666766666655555554432110 111222445777788
Q ss_pred CHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+.+.|...|.+...+... -....+....++++...+...- +.|... -...-...+.+.|++..|...|.+++
T Consensus 313 ~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI 385 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI 385 (539)
T ss_pred hHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 888888888876542111 1122233445666665555544 445432 22223566778899999999999888
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
. . -+-|...|....-+|.+.|.+.+|++-.+ ..++++|+....|.-=+.++....+|++|.+.|++.++..
T Consensus 386 k-r-~P~Da~lYsNRAac~~kL~~~~~aL~Da~----~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 386 K-R-DPEDARLYSNRAACYLKLGEYPEALKDAK----KCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred h-c-CCchhHHHHHHHHHHHHHhhHHHHHHHHH----HHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 2 25568889999999999999998887744 5667899888888888888888889999999998887754
No 86
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=4.8e-06 Score=86.58 Aligned_cols=361 Identities=14% Similarity=0.098 Sum_probs=214.1
Q ss_pred CChhHHHHHHH--HhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH-CC--------CCCCc
Q 006672 61 ASSRITTQLIS--SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LS--------VRPNR 129 (636)
Q Consensus 61 ~~~~~~~~li~--~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g--------~~p~~ 129 (636)
-|+.+-.++++ .|..-|++|.|.+-...+. +-..|..|.+.|.+..+.+-|.-.+-.|.. .| ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 46777777776 5778899999988777664 445699999999999888888777766643 11 1233
Q ss_pred ccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHH
Q 006672 130 LTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209 (636)
Q Consensus 130 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 209 (636)
.+=..+.-.....|.+++|+.++.+-.+.. .|=..|-..|.+++|.++-+.--. ..=..||.....-+
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR---iHLr~Tyy~yA~~L 868 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR---IHLRNTYYNYAKYL 868 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc---eehhhhHHHHHHHH
Confidence 222223333457889999999999887753 344567788999999988764321 11234666667777
Q ss_pred HhcCChHHHHHHHhhCC-----------------------CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------
Q 006672 210 SKIGYLRKAVELFGMMP-----------------------KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE-------- 258 (636)
Q Consensus 210 ~~~g~~~~A~~~~~~m~-----------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------- 258 (636)
-..++.+.|+++|++.. ..|...|.-....+-..|++|.|+.+|....+
T Consensus 869 ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~ 948 (1416)
T KOG3617|consen 869 EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIK 948 (1416)
T ss_pred HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeE
Confidence 77889999999998876 23555565566666678888888888876542
Q ss_pred ----------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC------------
Q 006672 259 ----------------KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG------------ 310 (636)
Q Consensus 259 ----------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~------------ 310 (636)
.|......|...|-..|++.+|...|-+.+ +|...|+.|-..+
T Consensus 949 C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred eeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 122334445566666666666666665543 2222232222111
Q ss_pred ---CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--------------CChhcHHHHHHHHH
Q 006672 311 ---ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--------------KDLLTWTAMIWGLA 373 (636)
Q Consensus 311 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~ 373 (636)
+.-.|.++|++. |. -...-+..|-|.|.+..|+++--+-.+ .|+...+.-..-+.
T Consensus 1020 ~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~ 1091 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFE 1091 (1416)
T ss_pred CchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 111222222221 10 011223456666666666554222111 24444555555566
Q ss_pred HcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCc
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~ 449 (636)
.+.++++|..++-..++ |...+..|...| +.--.++-+.|.-...-.|+ ......+.+.+.++|.+
T Consensus 1092 ~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Y 1161 (1416)
T KOG3617|consen 1092 NNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAY 1161 (1416)
T ss_pred hHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccch
Confidence 67777777777665544 334444444333 22223333444322212233 34566778889999999
Q ss_pred hHHHHHHHHHHHHH
Q 006672 450 SQGYQNSQNSFTKL 463 (636)
Q Consensus 450 ~~A~~~~~~~~~~~ 463 (636)
..|-+-|.++.+++
T Consensus 1162 h~AtKKfTQAGdKl 1175 (1416)
T KOG3617|consen 1162 HAATKKFTQAGDKL 1175 (1416)
T ss_pred HHHHHHHhhhhhHH
Confidence 99988888666554
No 87
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=6.8e-06 Score=87.28 Aligned_cols=217 Identities=10% Similarity=0.154 Sum_probs=139.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-----------------C--CCCH-HHHH---------HHHHHHHhcCCcH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAG-----------------V--RAND-FTVV---------SALSACAKVGALE 313 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------------~--~p~~-~t~~---------~ll~~~~~~~~~~ 313 (636)
.-+.-+.++...+-+.+-++++++..-.+ + .|+. ..|. .+...+...+-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 34556677777777777777777763210 0 1111 1222 2344556677788
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC
Q 006672 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (636)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 393 (636)
+|..+|... ..+....+.|++ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+.
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika----- 1130 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA----- 1130 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc-----
Confidence 888888754 344444455554 346777777777776654 45888888888888888888776543
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH--------HHHHHHhc
Q 006672 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ--------NSFTKLLQ 465 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~ 465 (636)
-|+..|..++.++++.|.+++-.+++...++ ..-+|.++ +.|+-+|++.+++.|-++++. ...+++++
T Consensus 1131 -dDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1131 -DDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred -CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhh
Confidence 2467788888888888888888888876664 44456555 567888888888888777765 11111111
Q ss_pred --------cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 466 --------LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 466 --------l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
+--.+.+.|..|+..+...|++..|...-+++-
T Consensus 1207 ~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 111255677778888888888887766555443
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.89 E-value=1.8e-07 Score=90.70 Aligned_cols=244 Identities=11% Similarity=0.064 Sum_probs=159.9
Q ss_pred HhcCCHHHHHHHHhhCCCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 006672 241 MRKGDLKKAGELFEQMPEK----GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
.-.|++..++.-.+ .... +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34566666664433 1111 1334445667777788776554 3333333 566555555555444434444444
Q ss_pred HHHHHHHHcCCC-CchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 317 RVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 317 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
.-+......... .+..+......+|...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ ...
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 444333322222 33444445556778899999999998876 5667777788999999999999999999987 544
Q ss_pred CHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 396 DGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 396 ~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
|. +...+..++.. ...+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.++++++ ++.+|.++
T Consensus 163 D~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a----l~~~~~~~ 235 (290)
T PF04733_consen 163 DS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA----LEKDPNDP 235 (290)
T ss_dssp CH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH----CCC-CCHH
T ss_pred cH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH----HHhccCCH
Confidence 53 44445544432 3368999999999975 34678889999999999999999999988754 57899999
Q ss_pred hhHHHHHHHHHHcCCh-hHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRW-KDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~ 500 (636)
.+...++.+....|+. +.+.+.+.+++..
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999999999988 6677888888763
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.87 E-value=1.1e-05 Score=76.05 Aligned_cols=406 Identities=8% Similarity=0.019 Sum_probs=213.2
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
...|..+++.-...+-.-...+--=+...|-..|++++|..++.-+. .++...|-.|.-.+--.|.+.+|..+-...
T Consensus 38 ytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred chhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 56666666655433321111111112334556788888888876543 233444544544444456677776664443
Q ss_pred HHCCCCCCcccH-HHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCCh
Q 006672 121 LRLSVRPNRLTY-PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV 199 (636)
Q Consensus 121 ~~~g~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 199 (636)
. +.... ..++...-+.++-+.-...++.+... ..-.-+|..+..-.-.+.+|.+++.+.... .|+-
T Consensus 118 ~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey 184 (557)
T KOG3785|consen 118 P------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEY 184 (557)
T ss_pred C------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhh
Confidence 2 22222 23334444566666666666555432 122233444444455678888888877644 3444
Q ss_pred hhHHHHH-HHHHhcCChHHHHHHHhhCC--CCCh-HHHHHHHHHHHh--cCCHH----------------HHHHHHh---
Q 006672 200 LLWNVLI-NGCSKIGYLRKAVELFGMMP--KKNV-ASWVSLIDGFMR--KGDLK----------------KAGELFE--- 254 (636)
Q Consensus 200 ~~~~~li-~~~~~~g~~~~A~~~~~~m~--~~~~-~~~~~li~~~~~--~g~~~----------------~A~~~~~--- 254 (636)
...|.-+ -+|.+..-++-+.+++.-.. -||. ...|.......+ .|+.. .+..+.+
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNL 264 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNL 264 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCe
Confidence 4455433 34566666665555544333 1332 222222221111 12111 1111111
Q ss_pred --------------hCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-----hcCCcHHH
Q 006672 255 --------------QMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-----KVGALEAG 315 (636)
Q Consensus 255 --------------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-----~~~~~~~a 315 (636)
.+.+.=+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+.. ....+.-|
T Consensus 265 VvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 265 VVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred EEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 11110012334566678888999999888766542 3444444444333321 12235567
Q ss_pred HHHHHHHHHcCCCCchhH-HHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc
Q 006672 316 VRVHNYISCNDFGLKGAI-GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (636)
.+.|..+-+++..-|... -.++...+.-..++++..-.++.+.. .|-..--.+..+++..|++.+|.++|-+....
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 777777666655444332 24555555566678888877777764 33333334677888888899998888777654
Q ss_pred CCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHhHhhcCCCCChhH-HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 392 GTEPDGTVFLAIL-TACWYSGQVKLALNFFDSMRFDYFIEPSVKH-HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 392 g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
.++ |..+|.+++ .+|.+.+.++.|++++-.+. .+.+... ...+..-+-+++.+=-|-+.|+.. -.++|
T Consensus 423 ~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~----t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l----E~lDP- 492 (557)
T KOG3785|consen 423 EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN----TPSERFSLLQLIANDCYKANEFYYAAKAFDEL----EILDP- 492 (557)
T ss_pred hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC----CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HccCC-
Confidence 343 455666555 56778888888888775543 1222222 233345566666665555555522 24555
Q ss_pred CchhH
Q 006672 470 HPSSY 474 (636)
Q Consensus 470 ~~~~~ 474 (636)
++..|
T Consensus 493 ~pEnW 497 (557)
T KOG3785|consen 493 TPENW 497 (557)
T ss_pred Ccccc
Confidence 55555
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.86 E-value=9.2e-05 Score=85.71 Aligned_cols=327 Identities=13% Similarity=0.042 Sum_probs=213.5
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CC----C----hHHHHHHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KK----N----VASWVSLIDGF 240 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~----~----~~~~~~li~~~ 240 (636)
.....|+++.+...++.++......+..........+...|++++|..++.... .. + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 344567778777777776432112233333444555677899999988887653 11 1 11222334556
Q ss_pred HhcCCHHHHHHHHhhCCC----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHH
Q 006672 241 MRKGDLKKAGELFEQMPE----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA----GV-RANDFTVVSALSACA 307 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~ll~~~~ 307 (636)
...|++++|...+++... .+ ...++.+...+...|++++|...+.+.... |- .+...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 789999999998887532 22 235566777788999999999999888752 21 111234455666778
Q ss_pred hcCCcHHHHHHHHHHHHc----CCC---CchhHHHHHhhHHhhcCCHHHHHHHHhhccC------C--ChhcHHHHHHHH
Q 006672 308 KVGALEAGVRVHNYISCN----DFG---LKGAIGTALVDMYAKCGNIEAASLVFGETKE------K--DLLTWTAMIWGL 372 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------~--~~~~~~~li~~~ 372 (636)
..|+++.|...++..... +.. .....+..+...+...|++++|...+++... + ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 899999999998876642 221 1233455666777888999999988887643 1 123455566678
Q ss_pred HHcCChHHHHHHHHHHhHcCCC-CCHHHH-----HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTE-PDGTVF-----LAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNL 442 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~ 442 (636)
...|++++|...+++....... .....+ ...+..+...|+.+.|.+.+..... .. .... ..+..+..+
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-PE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-CC-CccchhHHHHHHHHHHH
Confidence 8899999999999888652111 111111 1112344558899999999877653 11 1111 123567778
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCC--CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKP--KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+...|+.++|...++++....-.... ....++..++.+|...|+.++|...+.+..+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 89999999999999988765433222 223567788999999999999999999998754
No 91
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.86 E-value=5.5e-06 Score=84.98 Aligned_cols=284 Identities=18% Similarity=0.184 Sum_probs=169.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHH
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKK 248 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~ 248 (636)
+.|..|.+.|.+..|.+....=. .+..|......+..++.+..-+++|-.+|+++..++.. +..|.+-.-+.+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~dka-----le~fkkgdaf~k 692 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKA-----LECFKKGDAFGK 692 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHH-----HHHHHcccHHHH
Confidence 44666777777666655432111 11345555556666666666666676676666543321 111111111222
Q ss_pred HHHHHhhCCCCChh---------------------------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006672 249 AGELFEQMPEKGVV---------------------------SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS 301 (636)
Q Consensus 249 A~~~~~~~~~~~~~---------------------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 301 (636)
|.++-+-.-...++ ..-.-|.+......|.+|+.+++.+++... -.--|..
T Consensus 693 aielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~ 770 (1636)
T KOG3616|consen 693 AIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGE 770 (1636)
T ss_pred HHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchH
Confidence 22221110000000 011123344556677888888877776532 2234667
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC--ChhcHHHHHHHHHHcCChH
Q 006672 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--DLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~ 379 (636)
+...|+..|+++.|.++|-+. ..++--|+||.+.|++++|.++-.+...| .++.|-+-..-+-.+|++.
T Consensus 771 iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~ 841 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFA 841 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchh
Confidence 778888899999888888543 24566788999999999999988877665 3456666666677889998
Q ss_pred HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+|.++|-... .|+. .+..|-+.|..+..+++.++-- -..-.++...+..-|-..|++.+|++-|-++
T Consensus 842 eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h----~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 842 EAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH----GDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhC----hhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 8888876553 2542 3566778888888887776432 1122345556667777788888888776533
Q ss_pred HHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 460 FTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 460 ~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
.-|-.-.++|..++.|++|.++-+
T Consensus 909 ------------~d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 909 ------------GDFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ------------hhHHHHHHHhhhhhhHHHHHHHHh
Confidence 234455666777777777766543
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.85 E-value=6.3e-06 Score=84.10 Aligned_cols=200 Identities=9% Similarity=0.010 Sum_probs=108.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----Ch--hcHHHHHHHHH
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DL--LTWTAMIWGLA 373 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~ 373 (636)
.+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+. +. ..|..+...+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33344555566666666666665544 344555566666666666666666666655431 11 13445666677
Q ss_pred HcCChHHHHHHHHHHhHcCC-CCCHHHH-H--HHHHHHHhcCcHHHHHHH--HHHhHhhcCC-CCChhHHHHHHHHHHhc
Q 006672 374 IHGRYEQAIQYFKKMMYSGT-EPDGTVF-L--AILTACWYSGQVKLALNF--FDSMRFDYFI-EPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~-~p~~~t~-~--~ll~a~~~~g~~~~a~~~--~~~m~~~~~~-~p~~~~~~~l~~~~~~~ 446 (636)
..|++++|+.++++...... .+..... + .++.-+...|..+.+.+. .......... ..........+.++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 77777777777777654221 1111111 1 222222333332222222 1111100000 11112223566677788
Q ss_pred CCchHHHHHHHHHHHHHhcc-----CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 447 GQDSQGYQNSQNSFTKLLQL-----KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
|+.++|..+++......... .+.........+.++...|++++|.+.+......+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88888888888665544331 11234556677788889999999999999887754
No 93
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.84 E-value=6.5e-06 Score=77.32 Aligned_cols=302 Identities=12% Similarity=0.126 Sum_probs=188.0
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHH---HHHHHhcCChHHHHHHHhhCCCCChHHHHHH---HHHHHh
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL---INGCSKIGYLRKAVELFGMMPKKNVASWVSL---IDGFMR 242 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~l---i~~~~~ 242 (636)
-|-..+...|++.+|+.-|.... ..|...|.++ ...|...|+-..|+.=+.+..+..+..+.+- ...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAv----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAV----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence 34455666777777777777776 3444444443 3456667776666666666554333333322 234566
Q ss_pred cCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 006672 243 KGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 243 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 322 (636)
.|.++.|..=|+.+.+.+.. +|...+|.+-+.... ........+..+...|+...+++....+
T Consensus 119 ~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~~i~~l 181 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIEMITHL 181 (504)
T ss_pred cccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 77777777666665543321 011111111100000 0011223344455667888888888887
Q ss_pred HHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc---CCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-
Q 006672 323 SCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT- 398 (636)
Q Consensus 323 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~- 398 (636)
++.. +.|...+..-..+|...|.+..|..-++... ..+....--+-..+.+.|+.+.++...++-++ +.||..
T Consensus 182 lEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 182 LEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 7664 6788888888888888888888876555443 35566666677777788888888888888887 777753
Q ss_pred HH---HHH---H------HHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 399 VF---LAI---L------TACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 399 t~---~~l---l------~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
.| ..+ . ......+++.++.+-.+...+ ..|. ...+..+-.++...|++-+|++...+
T Consensus 259 Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e--- 332 (504)
T KOG0624|consen 259 CFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE--- 332 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHH---
Confidence 21 111 1 122345667777777776654 2333 22334455677778888888887664
Q ss_pred HHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.++++|+|..++.--+.+|.-...|++|+.-|+...+.+
T Consensus 333 -vL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 -VLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred -HHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 457889889899888999999999999999999888754
No 94
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.79 E-value=8.6e-06 Score=82.96 Aligned_cols=69 Identities=12% Similarity=0.139 Sum_probs=56.0
Q ss_pred CCChhH--HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 430 EPSVKH--HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 430 ~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
+|+... +-.++.-+-+.|+++.|.+.++.+.+ -.|.-+..|.+-+.++..+|..++|..++++.++.+.
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AId----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 445443 45677788899999999999997664 3676677788888999999999999999999988664
No 95
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.78 E-value=2.8e-06 Score=88.53 Aligned_cols=127 Identities=16% Similarity=0.113 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHH
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAI 374 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 374 (636)
++.-+...|...|+++.|.+..+..++.. |..+..|..-...|-+.|++.+|.+.++....- |-..-+-.+..+.+
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 44455566777788888888888777664 445677777777888888888888877776653 33344455666677
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHH------HH--HHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDGT------VF--LAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~~------t~--~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.|+.++|.+++....+.+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 788888888777776655433221 11 2334567777777777776665543
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.78 E-value=1.2e-05 Score=81.98 Aligned_cols=203 Identities=12% Similarity=0.050 Sum_probs=115.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCch--hHHHHHhh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKG--AIGTALVD 339 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~li~ 339 (636)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+....+... .++. ..+..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 33445556677777777777777777653 33445556666677777777777777777665421 1222 23445677
Q ss_pred HHhhcCCHHHHHHHHhhccCCCh--hcHH------HHHHHHHHcCChHHHHHHHHHHhHc--CCCCC---HHHHHHHHHH
Q 006672 340 MYAKCGNIEAASLVFGETKEKDL--LTWT------AMIWGLAIHGRYEQAIQYFKKMMYS--GTEPD---GTVFLAILTA 406 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~------~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~---~~t~~~ll~a 406 (636)
.+...|+.++|..++++....+. ..+. .++.-+...|....+.+. +.+... ...|+ .........+
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~ 273 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALA 273 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHH
Confidence 77788888888888877653211 1111 122222333432222222 111110 01011 1222245567
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCC-------CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFI-------EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~ 467 (636)
+...|+.++|..+++.+.....- ...+.......-++.+.|+.++|.+.+.++....-.+.
T Consensus 274 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~g 341 (355)
T cd05804 274 LAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIG 341 (355)
T ss_pred HhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 77889999999999888642111 01233334455567789999999999997776654443
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.76 E-value=8.5e-07 Score=85.98 Aligned_cols=214 Identities=16% Similarity=0.119 Sum_probs=115.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-C----CChHHHHHHHHHHH
Q 006672 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-K----KNVASWVSLIDGFM 241 (636)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~----~~~~~~~~li~~~~ 241 (636)
..-+.++|...|+.+.+. .++.... .|.......+...+...++-+.++.-+++.. . .+..+......++.
T Consensus 38 ~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~ 113 (290)
T PF04733_consen 38 DFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF 113 (290)
T ss_dssp HHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 334556666667665443 3333332 5555555444443333344555555554433 1 12223333335566
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHH
Q 006672 242 RKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVR 317 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~ 317 (636)
..|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. ...+..|.-
T Consensus 114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y 188 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFY 188 (290)
T ss_dssp CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 678888888777665 345566667788888888888888888887642 33444455554432 235677777
Q ss_pred HHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCCh-HHHHHHHHHHhH
Q 006672 318 VHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRY-EQAIQYFKKMMY 390 (636)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 390 (636)
+|+++.+. +++++.+.+.+..++...|++++|.+++.+... .+..+...++......|+. +.+.+++.++..
T Consensus 189 ~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 189 IFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 77776543 355666666666666666666666666655443 2333444444444445554 445555555554
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.73 E-value=2.5e-05 Score=90.39 Aligned_cols=323 Identities=11% Similarity=0.009 Sum_probs=172.5
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC----C--CCCCh--hhHHHHHHHHHhc
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK----N--KSESV--LLWNVLINGCSKI 212 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~~~~--~~~~~li~~~~~~ 212 (636)
..|++..+...+..+-......++.........+...|++++|...++..... + ..+.. .....+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 44555555555444311111122222333444455666777766666543211 0 01111 1112223344567
Q ss_pred CChHHHHHHHhhCCC----CCh----HHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CC--hhhHHHHHHHHHhCC
Q 006672 213 GYLRKAVELFGMMPK----KNV----ASWVSLIDGFMRKGDLKKAGELFEQMPE-------KG--VVSWTAMINGFSQNG 275 (636)
Q Consensus 213 g~~~~A~~~~~~m~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~~g 275 (636)
|++++|...+++... .+. ...+.+...+...|++++|...+++... +. ..++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 777777776665432 111 2334455556667777777777666542 11 234455566677778
Q ss_pred ChHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCCCchhHHHHHhhHHhhc
Q 006672 276 EAEKALAMFFQMLD----AGVR--A-NDFTVVSALSACAKVGALEAGVRVHNYISCN----DFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 276 ~~~~A~~l~~~m~~----~g~~--p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~ 344 (636)
++++|...+++... .+.. | ....+..+...+...|++++|...+...... +.......+..+...+...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 625 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLAR 625 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHc
Confidence 88888777776654 2211 1 1223334444556668888887777765542 1111233344456667777
Q ss_pred CCHHHHHHHHhhccC----C-ChhcHH-----HHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH---HHHHHHHHHHhcC
Q 006672 345 GNIEAASLVFGETKE----K-DLLTWT-----AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILTACWYSG 411 (636)
Q Consensus 345 g~~~~A~~~~~~~~~----~-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g 411 (636)
|+.+.|.+.+++... . ....+. ..+..+...|+.+.|..++............. .+..+..++...|
T Consensus 626 G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 626 GDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 888888777766532 1 111111 11233455677888887776654421111111 1344556677788
Q ss_pred cHHHHHHHHHHhHhh---cCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 412 QVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
+.++|...+++.... .+..++ ......+..+|.+.|+.++|.+.+.++.+..
T Consensus 706 ~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 706 QFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 888888888776532 232222 3456677778888888888888888776543
No 99
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=9.2e-06 Score=86.49 Aligned_cols=446 Identities=13% Similarity=0.052 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 006672 46 QLRQIHAQIILHNLFAS-SRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFML 121 (636)
Q Consensus 46 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 121 (636)
.+..++..+....++++ ..+|..|-..|...-+...|.+.|+... ..+..++-.....|++..+++.|..+.-.--
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 33444444444344333 2467777777777777778888887554 4466678888888888888888887732222
Q ss_pred HCCC-CCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChh
Q 006672 122 RLSV-RPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVL 200 (636)
Q Consensus 122 ~~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 200 (636)
+... ..-...|...--.+...++...+..-|+...+.. +.|...|..|..+|.++|++..|.++|.+..... +.+..
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y 631 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKY 631 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHH
Confidence 2110 0011122222223456667777777777777653 4466678888888888888888888887766332 22222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC---CC-------hHHHHHHHHHHHhcCCHHHHHHHHhhC-------CC----C
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPK---KN-------VASWVSLIDGFMRKGDLKKAGELFEQM-------PE----K 259 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~----~ 259 (636)
.--.....-+..|.+.+|+..+..... .- ..++-.+...+.-.|-...|...|+.- .. .
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~ 711 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQS 711 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 222233345667888888877766541 01 111111111122222222222222221 11 1
Q ss_pred ChhhHHHHHHHHHhCCChH------HHHHH-HHHHHHCCCCCC--------------------HHHHHHHHHHHHh----
Q 006672 260 GVVSWTAMINGFSQNGEAE------KALAM-FFQMLDAGVRAN--------------------DFTVVSALSACAK---- 308 (636)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~------~A~~l-~~~m~~~g~~p~--------------------~~t~~~ll~~~~~---- 308 (636)
+...|-.+.++|.---..+ -.+.+ +.+....+..|+ ..++..+...+.+
T Consensus 712 ~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~ 791 (1238)
T KOG1127|consen 712 DRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLL 791 (1238)
T ss_pred hHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHH
Confidence 1222322222211100000 00000 011111111111 1122222221111
Q ss_pred cC----CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc---CCChhcHHHHHHHHHHcCChHHH
Q 006672 309 VG----ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMIWGLAIHGRYEQA 381 (636)
Q Consensus 309 ~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A 381 (636)
.+ +...|...+...++.. ..+...|++|.-. ..-|++.-|.-.|-... +....+|..+...+.+..+++-|
T Consensus 792 l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A 869 (1238)
T KOG1127|consen 792 LGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHA 869 (1238)
T ss_pred cCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHh
Confidence 00 1112222222222221 2233333433333 33344444444443322 13445566666666666677777
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh---hcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 382 IQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF---DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
...|...+. +.|+ ...|......-...|+.-+...+|..-.. ..|-.|+..-|-|....-...|+.++-+.-.+
T Consensus 870 ~~af~~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 870 EPAFSSVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTAR 947 (1238)
T ss_pred hHHHHhhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhh
Confidence 777776665 5554 34454444444456666666666654211 12333444444444444445555544433333
Q ss_pred ------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 458 ------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 458 ------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
-+.++.+.-.|++..+|...+...-..+.+++|.+...+.
T Consensus 948 ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 948 KISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556777788999999999999999999999888777664
No 100
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00035 Score=70.10 Aligned_cols=423 Identities=13% Similarity=0.101 Sum_probs=234.3
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVS 136 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 136 (636)
+-|...|+.||.-+... ..++++..++++. +-....|..-|.+-....+++....+|.+.+..- .+...|..-|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 44778888888876665 8888888888776 3356678888888888888888888888887643 3455555555
Q ss_pred HHHHc-cCChHH----HHHHHHHH-HHhCCCCCh-hHHHHHHHH---------HHhcCChHHHHHHHhhCCCCCCCCChh
Q 006672 137 KSVAS-LSLLSL----GRGLHCLI-VKSGVEYDA-FVRVHLADM---------YVQLGKTRGAFKVFDETPEKNKSESVL 200 (636)
Q Consensus 137 ~~~~~-~~~~~~----a~~~~~~~-~~~g~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~~~~~~~~ 200 (636)
..-.+ .+.... ..+.|+.. .+.|.++-. ..|+..+.. |....+++..+++++++..-.+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 44332 222222 22333333 234543332 234444433 334456777788888776432111112
Q ss_pred hHHHH------HHHH-------HhcCChHHHHHHHhhCC--------------CC-------ChHHHHHHHHHHHhcC--
Q 006672 201 LWNVL------INGC-------SKIGYLRKAVELFGMMP--------------KK-------NVASWVSLIDGFMRKG-- 244 (636)
Q Consensus 201 ~~~~l------i~~~-------~~~g~~~~A~~~~~~m~--------------~~-------~~~~~~~li~~~~~~g-- 244 (636)
.|+-. |+.. -+...+..|.+++++.. ++ .+..|-.+|.-=...+
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 23221 1111 11233455555555543 00 0112333333211111
Q ss_pred ----CHH--HHHHHHhhCC---CCChhhHHH-------HHHHHHhCCC-------hHHHHHHHHHHHHCCCCCCHHHHHH
Q 006672 245 ----DLK--KAGELFEQMP---EKGVVSWTA-------MINGFSQNGE-------AEKALAMFFQMLDAGVRANDFTVVS 301 (636)
Q Consensus 245 ----~~~--~A~~~~~~~~---~~~~~~~~~-------li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ 301 (636)
.+- ...-++++.. --....|-- .-+.+...|+ .+++..++++....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0000111100 000111111 1112333333 4566777776665433335555544
Q ss_pred HHHHHHhc---CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHH
Q 006672 302 ALSACAKV---GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLA 373 (636)
Q Consensus 302 ll~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~ 373 (636)
+...--.. ...+....+++.+++.....-.-+|..++..-.+..-+..|+.+|.+..+ .++...++++.-|+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 43322111 13566667777776643333345677788888888888999999988875 26667788887766
Q ss_pred HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCch
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 450 (636)
.++.+-|.++|+--.+ ..+| +.-....+.-+++.++-..++.+|++.... ++.|+ .+.|..+++-=..-|++.
T Consensus 414 -skD~~~AfrIFeLGLk--kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLK--KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred -cCChhHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCChhhhHHHHHHHHHHHHhcccHH
Confidence 4677888888887665 3344 334445667777888888899999988863 56655 678999999888899999
Q ss_pred HHHHHHHHHHHHHhc-cCCCCchhHHHHHHHHHHcCChhHH
Q 006672 451 QGYQNSQNSFTKLLQ-LKPKHPSSYVLLSNIYAAEGRWKDV 490 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~-l~p~~~~~~~~l~~~~~~~g~~~~A 490 (636)
.+.++-++.....-+ .+|+- ..-..+.+-|.-.+.+..-
T Consensus 490 si~~lekR~~~af~~~qe~~~-~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEG-NETALFVDRYGILDLYPCS 529 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCC-ChHHHHHHHHhhccccccc
Confidence 888888866543221 22211 1122344555555554433
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=0.00036 Score=74.79 Aligned_cols=270 Identities=19% Similarity=0.176 Sum_probs=156.8
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (636)
.....+-+++|..+|+..- .+..+.+.||. .-+..+.|.++-++..+ +.+|+.+..+-.+.|.+.+|.+-
T Consensus 1057 iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1057 IAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred HHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHH
Confidence 3444555666666665542 23333444433 23445555555544433 34566666666666666666665
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh
Q 006672 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
|-+. .|...|..++....+.|.+++-...+....+..-.|...+ .++-+|++.+++.+-.++.. .|+..
T Consensus 1127 yika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A 1195 (1666)
T KOG0985|consen 1127 YIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVA 1195 (1666)
T ss_pred HHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCch
Confidence 5332 3345566666666666666666666655555444444332 45556666666554443331 34555
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCc
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ 412 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 412 (636)
-...+.+-+...|.++.|.-+|. ++.-|..|...+...|++..|...-++. .+..||..+-.||...+.
T Consensus 1196 ~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~E 1264 (1666)
T KOG0985|consen 1196 NIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEE 1264 (1666)
T ss_pred hHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhh
Confidence 55555566666666666655554 3456777777888888888877665543 235688888888877766
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
+.-|. |- -..+....+-..-++..|...|-++|-+.+++ .++.++..+.+.|.-|+-.|++-
T Consensus 1265 FrlAQ-----iC-GL~iivhadeLeeli~~Yq~rGyFeElIsl~E----a~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1265 FRLAQ-----IC-GLNIIVHADELEELIEYYQDRGYFEELISLLE----AGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred hhHHH-----hc-CceEEEehHhHHHHHHHHHhcCcHHHHHHHHH----hhhchhHHHHHHHHHHHHHHHhc
Confidence 55442 21 12233345556678888888888888888777 33455555666777776666654
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.60 E-value=3.9e-06 Score=76.82 Aligned_cols=147 Identities=11% Similarity=0.119 Sum_probs=112.7
Q ss_pred hhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 416 (636)
+-.|.+.|+++.+....+.+..+. . .|...++.++++..+++..+ ..|+ ...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345777777776655443332221 0 11225667888888888887 4555 66888888999999999999
Q ss_pred HHHHHHhHhhcCCCC-ChhHHHHHHHHH-HhcCC--chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHH
Q 006672 417 LNFFDSMRFDYFIEP-SVKHHTVVVNLL-SRVGQ--DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
...|++..+ +.| +...+..+..++ .+.|+ .++|.++++++. +.+|+++.++..++..+.+.|++++|..
T Consensus 93 ~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al----~~dP~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 93 LLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL----ALDANEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred HHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH----HhCCCChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999875 445 578888888864 67787 599999988554 7799999999999999999999999999
Q ss_pred HHHHHHhCC
Q 006672 493 VRTLMQRRS 501 (636)
Q Consensus 493 ~~~~m~~~g 501 (636)
.|+++.+..
T Consensus 166 ~~~~aL~l~ 174 (198)
T PRK10370 166 LWQKVLDLN 174 (198)
T ss_pred HHHHHHhhC
Confidence 999998854
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.59 E-value=2e-06 Score=74.49 Aligned_cols=122 Identities=14% Similarity=0.091 Sum_probs=81.1
Q ss_pred HHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 353 VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
+|++..+-++..+..+...+.+.|++++|+..|++... ..|+ ...+..+..++...|++++|...|++..+ --+.
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~ 90 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDAS 90 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCC
Confidence 34444433343455566667777777778777777776 5554 45667777777777888888888777764 1233
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
++..+..++.++.+.|++++|.+.++++. ++.|+++..|...+.+..
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al----~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAI----KMSYADASWSEIRQNAQI 137 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHH
Confidence 56777777777777788888877777443 567777777766665543
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.57 E-value=4.1e-06 Score=79.79 Aligned_cols=182 Identities=9% Similarity=0.053 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc---hhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC-hh---cHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK---GAIGTALVDMYAKCGNIEAASLVFGETKE--KD-LL---TWT 366 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~---~~~ 366 (636)
...+......+...|+++.|...++.+.+.. +.+ ...+..+...|.+.|++++|...++++.+ |+ .. ++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445555555666666666666666665433 111 13445555566666666666666665543 11 11 233
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHH
Q 006672 367 AMIWGLAIH--------GRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (636)
Q Consensus 367 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 437 (636)
.+..++.+. |+.++|++.|+++.+ ..|+.. ....+... +... ... .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~----~~~~------~~~---------~~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRM----DYLR------NRL---------AGKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHH----HHHH------HHH---------HHHHH
Confidence 334444333 455556666665555 333322 11111100 0000 000 01123
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.+.|.+.|++++|...++++.+. ..-.|..+..+..++.+|...|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVEN-YPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH-CCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5677889999999999999977644 1113445678999999999999999999999988764
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.55 E-value=1.2e-07 Score=58.56 Aligned_cols=32 Identities=38% Similarity=0.579 Sum_probs=15.1
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 159 GVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 159 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.2e-07 Score=58.48 Aligned_cols=34 Identities=35% Similarity=0.564 Sum_probs=29.4
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (636)
+|++||..|||+||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999998884
No 107
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.53 E-value=4.7e-06 Score=72.09 Aligned_cols=109 Identities=15% Similarity=0.154 Sum_probs=93.6
Q ss_pred HHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 382 IQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..+|++..+ +.|+. +.....++...|++++|...|+.... +.| +...|..++.++.+.|++++|...|+++.
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al 85 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL 85 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777776 56664 45567788899999999999999885 344 68899999999999999999999999655
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+++|.++..+..++.++...|++++|...+++..+..
T Consensus 86 ----~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 86 ----MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred ----hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999998854
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=0.00021 Score=74.79 Aligned_cols=237 Identities=12% Similarity=0.129 Sum_probs=157.7
Q ss_pred CCCcchHHHHHH--HHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC---------
Q 006672 91 PKNLHIFNVLIR--GLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG--------- 159 (636)
Q Consensus 91 ~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g--------- 159 (636)
.-|..+-.+|+. -|..-|+.+.|.+-.+... +...|..+.+.|.+.++++-|+-.+..|....
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 446677777774 4667899999988777654 34568889999999888888887777665321
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCC-hHHHHHHHH
Q 006672 160 VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKN-VASWVSLID 238 (636)
Q Consensus 160 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~li~ 238 (636)
-.++ ..-.-..-.....|.+++|+.+|.+-. -|..|=..|-..|.|++|.++-+.-.... ..||.....
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ck---------R~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCK---------RYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHH---------HHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 1221 222223333457799999999998876 24455567778999999999876543222 236666666
Q ss_pred HHHhcCCHHHHHHHHhhCCCC-----------------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006672 239 GFMRKGDLKKAGELFEQMPEK-----------------------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (636)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 295 (636)
-+-..++.+.|++.|++...+ |...|.-...-+-..|+.+.|+.+|....+
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------ 940 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------ 940 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence 677788899999888876432 222343344444556667777766665543
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
|-++.+..+-.|+.++|.++-++ .-|....-.|..+|-..|++.+|...|.+..
T Consensus 941 ---~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 33445555667777777776554 2355566678888888888888888887654
No 109
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=1.2e-05 Score=81.11 Aligned_cols=213 Identities=12% Similarity=0.162 Sum_probs=102.2
Q ss_pred HHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
+.+.|++.+|.-.|+.....| ...|--|...-..+++-..|+.-+++..+.. +-|...+..|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 456666777766666655433 4566666666666776666766666666542 224445555555566666555565
Q ss_pred HHHHHHHHcCCCCchhHHHHHh-------hHHhhcCCHHHHHHHHhhcc-----CCChhcHHHHHHHHHHcCChHHHHHH
Q 006672 317 RVHNYISCNDFGLKGAIGTALV-------DMYAKCGNIEAASLVFGETK-----EKDLLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li-------~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
..+..-++..++ -.....+-. ........+....++|-++. +.|......|.-.|...|.+++|+..
T Consensus 374 ~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 555544332211 000000000 00011111222222332221 13444444555555555555555555
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 385 FKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 385 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
|+.++. ++|+ ..+|+.|...++...+.++|+..|++..+ +.|+ +.....|+-.|...|.++||.+.|-.+
T Consensus 453 f~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq---LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 453 FEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ---LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh---cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 555555 4444 23455555555555555555555555543 4444 334444444555555555555554433
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=2.4e-05 Score=80.90 Aligned_cols=211 Identities=17% Similarity=0.111 Sum_probs=143.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 311 (636)
.-..+...+.+.|-...|..+|++. ..|...|..|...|+..+|..+..+-.+ -+||...|..+.....+..-
T Consensus 400 ~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHH
Confidence 3455667777888888888888774 5577777788888888888777777666 36777777777666666556
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (636)
+++|.++.++.... .-..+.......++++++.+.|+.-.+- -..+|-....+..+.++++.|.+.|..-
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 66777666654322 1122222233367777777777765542 3457777777777777777887777777
Q ss_pred hHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 389 MYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 389 ~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.. ..||. ..|+.+-.+|.+.|+-.+|...+++..+ ++ ..+...|.+.+-...+.|.+++|.+.+.++.
T Consensus 546 vt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 546 VT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 77 67774 4777777778888877788777777774 44 4455566666666777777888777777554
No 111
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=1.6e-05 Score=87.56 Aligned_cols=200 Identities=13% Similarity=0.112 Sum_probs=149.3
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--------CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-hhhHH
Q 006672 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMPK--------KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK-G-VVSWT 265 (636)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~ 265 (636)
|-+...|-..|.-..+.++.++|.+++++... .-..+|.+++++-...|.-+...++|++..+- | ...|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 44556777777777788888888877777662 12347778887777778788888888887653 2 45677
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCchhHHHHHhhHHhhc
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAKC 344 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~ 344 (636)
.|...|.+.+.+++|.++|+.|.+. ..-....|...+..+.+..+-+.|..++.++++.-. .-......-.+++-.++
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888888874 234556777778888888888888888888776421 12455566677777888
Q ss_pred CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 345 GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 345 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
|+.+.++.+|+.... +-...|+..|..-.++|+.+.+..+|++....++.|-
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 888888888887764 3566888888888888888888888888888777765
No 112
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=7.1e-06 Score=82.60 Aligned_cols=223 Identities=13% Similarity=0.022 Sum_probs=171.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
..-+.++|+..+|.-.|+...... +-+...|.-|...-...++-..|+..+.+.++.. |.+..+..+|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 345678999999999999988764 4466788888888888888889999999998876 67888999999999999999
Q ss_pred HHHHHHHhhccCCC-hhcHHHHH---------HHHHHcCChHHHHHHHHHHh-HcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 006672 348 EAASLVFGETKEKD-LLTWTAMI---------WGLAIHGRYEQAIQYFKKMM-YSGTEPDGTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 348 ~~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~t~~~ll~a~~~~g~~~~a 416 (636)
.+|.+.++.-.... ...|.... ..+..........++|-++. ..+.++|+.....|.-.|--.|.+++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999987643210 00000000 11111122334455555554 445456777777777778889999999
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
...|+.+.. ++|+ ...||-|+..++...+.+||+..|+++ +++.|.-..+...|+-.|...|.++||.+.|-
T Consensus 450 iDcf~~AL~---v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA----LqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 450 VDCFEAALQ---VKPNDYLLWNRLGATLANGNRSEEAISAYNRA----LQLQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHh---cCCchHHHHHHhhHHhcCCcccHHHHHHHHHH----HhcCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999985 6675 778999999999999999999999855 58899999999999999999999999999988
Q ss_pred HHHh
Q 006672 496 LMQR 499 (636)
Q Consensus 496 ~m~~ 499 (636)
....
T Consensus 523 ~AL~ 526 (579)
T KOG1125|consen 523 EALS 526 (579)
T ss_pred HHHH
Confidence 7655
No 113
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=8.6e-05 Score=73.11 Aligned_cols=212 Identities=10% Similarity=0.075 Sum_probs=142.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND-FTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
++..+-..+...++.++|+.+..++++. .|+. ..+..--.++...+ +++++...++.+.+.. +.+..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3444445566677888888888888874 3443 34444444445555 5678888888887665 4555566655555
Q ss_pred HhhcCCH--HHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc---Cc
Q 006672 341 YAKCGNI--EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS---GQ 412 (636)
Q Consensus 341 ~~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~---g~ 412 (636)
+.+.|+. +++...++.+.+ +|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 5555652 566777777664 57778998888888899999999999999985433 344565555555443 22
Q ss_pred ----HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc----CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 413 ----VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 413 ----~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
.++...+...++. -.+-+...|+.+..+|... ++..+|.+++.++ +..+|+++.+...|+.+|...
T Consensus 195 ~~~~~e~el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~----~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 195 LEAMRDSELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV----LSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccHHHHHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh----hcccCCcHHHHHHHHHHHHhh
Confidence 2466777766664 1234577888888888773 4456788777654 356888888999999999864
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=6.7e-06 Score=84.93 Aligned_cols=214 Identities=9% Similarity=0.064 Sum_probs=176.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
..+...+...|-...|+.+|++... +..++.+|...|+..+|..+.....+ -+|++..|..|.+.....
T Consensus 402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence 4567788899999999999988753 55678889999999999999888877 379999999999999888
Q ss_pred CCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
.-++.|.++++....+--..|+.. ....++++++.+.|+.-.+ +.|- ..+|..+..+..+.+++..|.+.|..-
T Consensus 471 s~yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 471 SLYEKAWELSNYISARAQRSLALL---ILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred HHHHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 889999999987765422222222 2347899999999999877 5554 458888888888999999999999988
Q ss_pred HhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 424 RFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 424 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.. ..|+ .+.|+++..+|.+.|+..+|...+.++. +-+-++...|...+-...+-|.|++|.+.+.++.+..
T Consensus 546 vt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl----Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 546 VT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL----KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh----hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 74 4565 7899999999999999999999998776 4456677888888888999999999999999987643
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.45 E-value=0.00017 Score=77.33 Aligned_cols=443 Identities=11% Similarity=0.035 Sum_probs=242.2
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCC---cchHHH--HHHHHHhCCCchHHHHHH
Q 006672 43 STKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKN---LHIFNV--LIRGLAENSHFQSCISHF 117 (636)
Q Consensus 43 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~--li~~~~~~g~~~~A~~~~ 117 (636)
+...|.+.|....... ..+...+..+.+.|++..+++.|..+.-...+.+ ...||. ..-.|...++...|+.-|
T Consensus 507 Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~f 585 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEF 585 (1238)
T ss_pred HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHH
Confidence 3556666666665543 2366778889999999999999988743222221 122222 222345566666666666
Q ss_pred HHhHHCCCCC-CcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC---
Q 006672 118 VFMLRLSVRP-NRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK--- 193 (636)
Q Consensus 118 ~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 193 (636)
+...+. .| |...|..+..+|...|++..|..+|.++....+ .+.+..--..-+-+..|.+.+|...+..+...
T Consensus 586 QsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP-~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 586 QSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP-LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred HHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc-HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 666553 23 455666666777777777777777766655321 11111111222334456666666665544311
Q ss_pred ---CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-------------------------------CCChHHHHHHHHH
Q 006672 194 ---NKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-------------------------------KKNVASWVSLIDG 239 (636)
Q Consensus 194 ---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------------------------------~~~~~~~~~li~~ 239 (636)
+...-..++-.+...+.-.|-..+|..+++... +|+.+. ..++..
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn-~h~l~i 741 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN-MHYLII 741 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH-HHHHHH
Confidence 001112223223333333333333333333322 122111 111111
Q ss_pred HHh----cCCH---H---HHHHHHhhCC--CCChhhHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCHHHH
Q 006672 240 FMR----KGDL---K---KAGELFEQMP--EKGVVSWTAMINGFSQ--------NGEAEKALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 240 ~~~----~g~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~~t~ 299 (636)
+.+ .+.. | -+.+.+-.-. ..+..+|..++..|.+ ..+...|+..+.+..+.. .-+..++
T Consensus 742 l~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~W 820 (1238)
T KOG1127|consen 742 LSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLW 820 (1238)
T ss_pred HHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHH
Confidence 111 1111 1 0111111000 0124567777766654 122346778887777642 3355666
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcC
Q 006672 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG 376 (636)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 376 (636)
+.+--. +..|++.-+.--|-...... +....+|..+.-.+.+..+++.|...|..... .|...|-.........|
T Consensus 821 naLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 821 NALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred HHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence 655433 55566655554444433332 56778889999999999999999999988775 46778887777777889
Q ss_pred ChHHHHHHHHHH--hH--cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh--------hcCCCCChhHHHHHHHHHH
Q 006672 377 RYEQAIQYFKKM--MY--SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF--------DYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 377 ~~~~A~~~~~~m--~~--~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~--------~~~~~p~~~~~~~l~~~~~ 444 (636)
+.-+++.+|..- .. .|-.|+-.-|.....-....|+.++-+...+.+.. ..+.+.....|.+.+..+-
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlE 978 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLE 978 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHH
Confidence 999999999872 22 23344444444444444456665554433333211 0244455778999999999
Q ss_pred hcCCchHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKP---KHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p---~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
+.+.+++|.++..+...- ++..- .+.+.--.++..+...|.++.|...+
T Consensus 979 hL~ey~~a~ela~Rligl-Le~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 979 HLEEYRAALELATRLIGL-LELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 999999999988875532 22221 12223335667777778887665443
No 116
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=2.9e-05 Score=85.58 Aligned_cols=202 Identities=12% Similarity=0.106 Sum_probs=149.1
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc-CCC---CchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHH
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCN-DFG---LKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAM 368 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l 368 (636)
+...|...|......++.+.|+++.+++++. ++. --..+|.+++++-..-|.-+...++|+++.+ .....|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456677777777788888888888877652 221 2245677777777777777788888888776 234567788
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHh
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR 445 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~ 445 (636)
...|.+.+++++|.++++.|.+. ..-....|...+..+.+..+-+.|..++++..+ .-|. .....-.+.+-.+
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHHHHHHHHHHhh
Confidence 88888888888888888888875 334456788888888888888888888888775 2233 4445566677778
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
.|+-+.+..+|+.. +.-.|+-...|+.+++.-.+.|..+.+..+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgl----l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGL----LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHH----HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 88888888888743 34478778888888888888888888888888888877654
No 117
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=0.00013 Score=67.56 Aligned_cols=95 Identities=13% Similarity=0.040 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
.+|.-...+.+.|+++.|.+-+-.|.-. .-..|++|...+.-. -..+++..+.+-+..+++.+ |....++..++-.|
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLlly 320 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLY 320 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 4555555566777777777777666431 223456665544221 12344555666666666554 34566777777788
Q ss_pred hhcCCHHHHHHHHhhccC
Q 006672 342 AKCGNIEAASLVFGETKE 359 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~ 359 (636)
+|..-++-|-.++.+-..
T Consensus 321 CKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 321 CKNEYFDLAADVLAENAH 338 (459)
T ss_pred hhhHHHhHHHHHHhhCcc
Confidence 888878877777765443
No 118
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.40 E-value=3.7e-05 Score=83.41 Aligned_cols=133 Identities=10% Similarity=-0.000 Sum_probs=95.2
Q ss_pred CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHH
Q 006672 326 DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFL 401 (636)
Q Consensus 326 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 401 (636)
..+.++..+..|.+.....|..++|+.+++...+ | +...+..++..+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 3455677777777888888888888888877765 3 445677777778888888888888888777 666644 444
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.+..++.+.|++++|..+|+++.. ..+-+...+..+..++...|+.++|...|+++.+.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555567778888888888888774 22233667777778888888888888888766543
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=0.00013 Score=73.20 Aligned_cols=361 Identities=15% Similarity=0.098 Sum_probs=210.2
Q ss_pred HHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC-hhHHHHHHHHHHhcCCh
Q 006672 102 RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD-AFVRVHLADMYVQLGKT 180 (636)
Q Consensus 102 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 180 (636)
.+....|+++.|+.+|.+...... +|.+.|+.-..+++..|+++.|.+=-.+-++. .|+ ..-|+-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 345667888888888888776532 37777888888888888888877655555553 444 34566677777777888
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHH-----HHHHhcCCHHHHHHHHhh
Q 006672 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLI-----DGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 181 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~ 255 (636)
++|+..|.+-.+.. +.|...++.+..++... . ++.+.| .++..|..+. +.+...-.+..-++.+..
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~-----~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--Y-AADQLF-----TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--H-Hhhhhc-----cCcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 88888888776554 55666666666666111 0 111111 1111111111 111111111111111111
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHH-----HHHH-------CCCCC----------------------CHHHHHH
Q 006672 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFF-----QMLD-------AGVRA----------------------NDFTVVS 301 (636)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-----~m~~-------~g~~p----------------------~~~t~~~ 301 (636)
-+. . +.+|.+-.+...|...+. .+.. .+..| -..-...
T Consensus 158 ~p~----~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 158 NPT----S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred CcH----h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 110 0 000000000000000000 0000 00011 0112345
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh----------cHHHHHHH
Q 006672 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL----------TWTAMIWG 371 (636)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----------~~~~li~~ 371 (636)
+.++.-+..+++.+.+-+....... .+..-++....+|...|...+....-+...+..-. +...+..+
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a 307 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA 307 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh
Confidence 6666667778888888888887665 56666777888888888887777666555442111 22334456
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCch
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~ 450 (636)
|.+.++++.|+..|++.+.....|+.. .+....+++....+... -+.|.. .--..-+..+.+.|++.
T Consensus 308 ~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 308 YTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHH
Confidence 777788899999998877654554322 22334455555544433 233442 12223367788999999
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+|...|.+++ +.+|+|+..|...+-+|.+.|.+..|+.--+...+.
T Consensus 376 ~Av~~YteAI----kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 376 EAVKHYTEAI----KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHHHH----hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 9999999765 568999999999999999999999999987777765
No 120
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=0.00017 Score=68.13 Aligned_cols=294 Identities=10% Similarity=0.033 Sum_probs=166.1
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCcchHHHHH---HHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH-HHHHHHccC
Q 006672 68 QLISSASLHKSIDYALSIFDHFTPKNLHIFNVLI---RGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF-VSKSVASLS 143 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~ 143 (636)
-|-..+...|.+.+|+.-|....+-|+..|-++. ..|...|+...|+.-|.+.++ ++||-..-.. --..+.+.|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 4455566678899999999888777777777765 468888999999999988887 5787543221 123466889
Q ss_pred ChHHHHHHHHHHHHhCCCCCh--hH------------HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHH
Q 006672 144 LLSLGRGLHCLIVKSGVEYDA--FV------------RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC 209 (636)
Q Consensus 144 ~~~~a~~~~~~~~~~g~~~~~--~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 209 (636)
.++.|..=|..+++.....+. .. ....+..+.-.|+...|......+.+.. +.|+..+..-..+|
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence 999999999999887532111 01 1122233344566666666666655444 45566666666666
Q ss_pred HhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh------hHHHHHHHHHhCCChHHH
Q 006672 210 SKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVV------SWTAMINGFSQNGEAEKA 280 (636)
Q Consensus 210 ~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A 280 (636)
...|++..|+.=++... ..+.....-+-..+...|+.+.++...++-.+.|.. .|..+ .+.
T Consensus 200 i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKkl----------kKv 269 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKL----------KKV 269 (504)
T ss_pred HhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHH----------HHH
Confidence 66666666665544433 344445555555555666666665555554432211 11110 000
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCC---chhHHHHHhhHHhhcCCHHHHHHHHhhc
Q 006672 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGL---KGAIGTALVDMYAKCGNIEAASLVFGET 357 (636)
Q Consensus 281 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (636)
...+.. +......+++.++.+-.+.+.+..... ....+..+-..|...|++.+|.+...++
T Consensus 270 ~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 270 VKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 011111 111223344555555555554433221 1222334445555566666666666555
Q ss_pred cC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 358 KE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 358 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.+ .|+.++.--..+|.-...++.|+.-|+...+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 54 2344555555666666667777777777666
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.36 E-value=8.3e-05 Score=81.49 Aligned_cols=235 Identities=15% Similarity=0.063 Sum_probs=133.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CC-hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhC
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPK--KN-VASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQN 274 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 274 (636)
+...|..|+..+...+++++|.++.+.... |+ ...|-.+...+.+.++.+++..+ .++......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhcccc
Confidence 344455555555555555555555443332 11 12222233344444443333322 334444444
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHH
Q 006672 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVF 354 (636)
Q Consensus 275 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 354 (636)
.++.-+..+...|.+. .-+...+..+..+|.+.|+.+++..+++++++.. +.++.+.|.+...|+.. ++++|.+++
T Consensus 97 ~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 LKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred cchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4554444444555543 2344567777778888888888888888888776 67788888888888888 888888877
Q ss_pred hhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh
Q 006672 355 GETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV 433 (636)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 433 (636)
.+.. ..|...+++..+.++|.++.. ..|+... |..+++. +....+..--+
T Consensus 173 ~KAV-----------~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~k----------------i~~~~~~~~~~ 223 (906)
T PRK14720 173 KKAI-----------YRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERK----------------VLGHREFTRLV 223 (906)
T ss_pred HHHH-----------HHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHH----------------HHhhhccchhH
Confidence 6643 236666788888888888877 4455432 2222222 11111212223
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
.++--+..-|....+++++..+++. +++.+|.|.-+..-++..|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~----iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKK----ILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHH----HHhcCCcchhhHHHHHHHHH
Confidence 3344445556666667777776663 34566766666666666665
No 122
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.32 E-value=0.0053 Score=61.96 Aligned_cols=400 Identities=13% Similarity=0.104 Sum_probs=240.5
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 006672 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (636)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 169 (636)
+-|+.+|+.||+-+-.. ..+++.+.++++.. +-|+ ...|..-++.-....+++..+.+|.+-+..-+ +...|..
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence 45899999999877555 89999999999985 4564 45677778888899999999999999877533 4556666
Q ss_pred HHHHHHh-cCChHHHH----HHHhh-CCCCCCC-CChhhHHHHHHH---------HHhcCChHHHHHHHhhCCC-C--Ch
Q 006672 170 LADMYVQ-LGKTRGAF----KVFDE-TPEKNKS-ESVLLWNVLING---------CSKIGYLRKAVELFGMMPK-K--NV 230 (636)
Q Consensus 170 li~~~~~-~g~~~~A~----~~~~~-m~~~~~~-~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~-~--~~ 230 (636)
.++---+ .|+...++ +.|+- +.+.|+. .+-..|+..+.- +..+.+.+...++|.++.. | |.
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 5553332 23333221 22221 2222322 344557666553 4445567778888888873 1 11
Q ss_pred -HHHHH------HHHH-------HHhcCCHHHHHHHHhhCCC--------------CC-------hhhHHHHHHHHHhCC
Q 006672 231 -ASWVS------LIDG-------FMRKGDLKKAGELFEQMPE--------------KG-------VVSWTAMINGFSQNG 275 (636)
Q Consensus 231 -~~~~~------li~~-------~~~~g~~~~A~~~~~~~~~--------------~~-------~~~~~~li~~~~~~g 275 (636)
..|+- =|+. --+...+..|.++++++.. ++ +..|-.+|.-=..++
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 11111 1111 0122345566666665431 11 223555554322222
Q ss_pred Ch--------HHHHHHHHHH-HHCCCCCCHHH-HHHHHH----HHHhcCC-------cHHHHHHHHHHHHcCCCCchhHH
Q 006672 276 EA--------EKALAMFFQM-LDAGVRANDFT-VVSALS----ACAKVGA-------LEAGVRVHNYISCNDFGLKGAIG 334 (636)
Q Consensus 276 ~~--------~~A~~l~~~m-~~~g~~p~~~t-~~~ll~----~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~ 334 (636)
.- ....-.+++. .-.+..|+..- +...+. .+...|+ .+++..+++..+..-...+..+|
T Consensus 252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly 331 (656)
T KOG1914|consen 252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY 331 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1122222222 22344444321 111111 2233343 34555566555543333344455
Q ss_pred HHHhhHHhhc---CCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 335 TALVDMYAKC---GNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 335 ~~li~~~~~~---g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
..+.+.--.. ...+.....+++... .-..+|...+..-.+....+.|..+|.++.+.+..+- .....+++.-
T Consensus 332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 4444321111 123334444444433 2344788888888888889999999999999888883 4455666654
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHcC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK-HPSSYVLLSNIYAAEG 485 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g 485 (636)
--.++.+-|.++|+.-.+.+| .++.--...++-+...++-..|..+|++.... .+.|+ ...+|..++.--..-|
T Consensus 412 -~cskD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 -YCSKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred -HhcCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHHHHHHHHhcc
Confidence 446889999999998776554 44555578899999999999999999988876 33332 4579999999999999
Q ss_pred ChhHHHHHHHHHHhC
Q 006672 486 RWKDVARVRTLMQRR 500 (636)
Q Consensus 486 ~~~~A~~~~~~m~~~ 500 (636)
+...+.++-+++...
T Consensus 487 dL~si~~lekR~~~a 501 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTA 501 (656)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999998877653
No 123
>PLN02789 farnesyltranstransferase
Probab=98.31 E-value=0.00015 Score=71.39 Aligned_cols=183 Identities=9% Similarity=0.048 Sum_probs=136.1
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC-CHHHHHHHHhhccC---CChhcHHHHHHHHHHcCCh--HHH
Q 006672 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG-NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRY--EQA 381 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~--~~A 381 (636)
..+..++|......+++.. |.+..+|+....++.+.| .++++...++++.+ ++..+|+.....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 3467788888888888765 556667777777777777 67999999998775 4566788776666666663 678
Q ss_pred HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---CCc----hHHH
Q 006672 382 IQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---GQD----SQGY 453 (636)
Q Consensus 382 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~ 453 (636)
+.+++++++ ..|. ..+|.....++.+.|+++++++.++++++. -.-+...|+....++.+. |.. +++.
T Consensus 128 l~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 128 LEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 999999998 5555 568888888899999999999999999852 234567777777666655 333 3445
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHc----CChhHHHHHHHHHHh
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE----GRWKDVARVRTLMQR 499 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~m~~ 499 (636)
++.. +.++++|+|.++|.-+..++... ++..+|.+...+..+
T Consensus 204 ~y~~----~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 204 KYTI----DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHH----HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 5444 45678999999999999999884 344667777766554
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.30 E-value=6.3e-05 Score=71.62 Aligned_cols=182 Identities=10% Similarity=-0.059 Sum_probs=124.5
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh---
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND---FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA--- 332 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 332 (636)
.....+..++..+.+.|++++|...|+++.... +.+. .++..+..++...|++++|...++.+.+.. |.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHH
Confidence 346678888999999999999999999998753 2222 456777888999999999999999998754 22222
Q ss_pred HHHHHhhHHhhc--------CCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHH
Q 006672 333 IGTALVDMYAKC--------GNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL 401 (636)
Q Consensus 333 ~~~~li~~~~~~--------g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 401 (636)
.+..+...+.+. |+.++|.+.|+++.. |+ ...+..+..... .... . .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR-------L-------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH-------H-------HHHHH
Confidence 455555666554 788999999998875 32 222322211110 0000 0 00112
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+...+...|++++|...++.....+.-.| ....+..++.++.+.|++++|...++...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567888999999999988876443333 35778888899999999999998877544
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=0.00014 Score=66.58 Aligned_cols=160 Identities=12% Similarity=0.140 Sum_probs=123.3
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 369 (636)
.|+......+-.++...|+-+....+.....- ..+.|..+...++....+.|++..|...|.+... +|...|+.+.
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 44333225555666677777777766666442 2356667777788888999999999999988775 5778999999
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
.+|.+.|+.+.|..-|.+..+ +.|+ +..++.+.-.+.-.|+.+.|..++..... .-.-+...-..+.-+.+..|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcCC
Confidence 999999999999999999988 6776 55778888888889999999999988764 223366777888888899999
Q ss_pred chHHHHHHH
Q 006672 449 DSQGYQNSQ 457 (636)
Q Consensus 449 ~~~A~~~~~ 457 (636)
+++|.++..
T Consensus 218 ~~~A~~i~~ 226 (257)
T COG5010 218 FREAEDIAV 226 (257)
T ss_pred hHHHHhhcc
Confidence 999988876
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.24 E-value=8.9e-05 Score=67.87 Aligned_cols=113 Identities=12% Similarity=0.111 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH-HhhcCC--HHHHHH
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM-YAKCGN--IEAASL 352 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~ 352 (636)
+.++++..+++..+.+ +.|...|..+...+...|+++.|...++...+.. +.+..++..+..+ |...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3344444444443332 3344444444444444444444444444444433 3334444444443 233333 244444
Q ss_pred HHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 353 VFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 353 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
++++..+ .+..++..+...+.+.|++++|+..|+++.+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444332 2333444444444444444444444444444
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00065 Score=62.26 Aligned_cols=222 Identities=12% Similarity=0.056 Sum_probs=142.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG-VRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
.-.-+-.+|...|.+...+. +... |-.|....+..+.......++.+.- ..+.+.+.......+......-...|
T Consensus 43 ~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~ 118 (299)
T KOG3081|consen 43 LDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIY 118 (299)
T ss_pred HHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHh
Confidence 33334556666666543332 2222 2234444444443333334443332 23444444444444444444555678
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHH
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLAL 417 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~ 417 (636)
.+.|++++|.+...... +....-.=...+.+..+.+-|.+.+++|.+ +. +..|.+.|..++.+ .+.+.+|.
T Consensus 119 ~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~awv~la~ggek~qdAf 193 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAWVKLATGGEKIQDAF 193 (299)
T ss_pred hcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHHHHHhccchhhhhHH
Confidence 88999999999888733 333333333445567788999999999987 32 45677777776654 45688999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHH-HHHHHH
Q 006672 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDV-ARVRTL 496 (636)
Q Consensus 418 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 496 (636)
-+|++|.. ...|++.+.+.+..+....|++++|..+++.+..+ +|+++.+...++-+-...|+..++ .+...+
T Consensus 194 yifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k----d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 194 YIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK----DAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred HHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 99999974 46788888898988999999999999999876644 788888888888877778876554 445555
Q ss_pred HHh
Q 006672 497 MQR 499 (636)
Q Consensus 497 m~~ 499 (636)
.+.
T Consensus 268 Lk~ 270 (299)
T KOG3081|consen 268 LKL 270 (299)
T ss_pred HHh
Confidence 544
No 128
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00017 Score=71.63 Aligned_cols=137 Identities=13% Similarity=0.112 Sum_probs=103.1
Q ss_pred HHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHH
Q 006672 340 MYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKL 415 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 415 (636)
.+...|+.++|+..++.+.. .|+..+......+...++..+|.+.++++.. ..|+ ......+..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777788777777653 4566677777788888888888888888888 6777 4566667778888888888
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
|..+++.... ..+-++..|..|..+|...|+..+|... .+..|...|+|++|.....
T Consensus 393 ai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A---------------------~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 393 AIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLA---------------------RAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHH---------------------HHHHHHhCCCHHHHHHHHH
Confidence 8888888763 4566788888888888888887776553 3356777888888888888
Q ss_pred HHHhCC
Q 006672 496 LMQRRS 501 (636)
Q Consensus 496 ~m~~~g 501 (636)
..+++.
T Consensus 450 ~A~~~~ 455 (484)
T COG4783 450 RASQQV 455 (484)
T ss_pred HHHHhc
Confidence 887754
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=2.4e-05 Score=67.13 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=87.5
Q ss_pred HHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 384 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.++++.. ..|+. .....+...+...|++++|.+.|+.+.. . -+.+...+..+...|.+.|++++|...++++.
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-- 78 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-Y-DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA-- 78 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-h-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4555555 55654 3456666778889999999999998875 2 23467888889999999999999999888544
Q ss_pred HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+++|+++..+..++.+|...|++++|...+++..+..
T Consensus 79 --~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 79 --ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999999999888754
No 130
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00018 Score=65.79 Aligned_cols=156 Identities=13% Similarity=0.075 Sum_probs=118.4
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILT 405 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 405 (636)
|..+ ..+-..+.-.|+-+.+..+...... .|....+..+....+.|++..|+..|++... ..| |..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 4444 5566667777777777777766543 3555666688888888999999999998887 444 4678888888
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
+|.+.|+.++|..-|.+..+ +.| ++..++.+.-.|.-.|+++.|..++..+. ...+.|..+-..|..+....
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~----l~~~ad~~v~~NLAl~~~~~ 215 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY----LSPAADSRVRQNLALVVGLQ 215 (257)
T ss_pred HHHHccChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH----hCCCCchHHHHHHHHHHhhc
Confidence 89999999999998888875 333 36677888888888899999998888664 23455788888888888889
Q ss_pred CChhHHHHHHH
Q 006672 485 GRWKDVARVRT 495 (636)
Q Consensus 485 g~~~~A~~~~~ 495 (636)
|++++|..+..
T Consensus 216 g~~~~A~~i~~ 226 (257)
T COG5010 216 GDFREAEDIAV 226 (257)
T ss_pred CChHHHHhhcc
Confidence 99988887643
No 131
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=7.9e-05 Score=63.49 Aligned_cols=117 Identities=9% Similarity=0.010 Sum_probs=94.0
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..-.+..-+...|++++|.++|+.+.. +.| +..-|-.|.-++-..|++++|++.|.++. .++|+|+.++..+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~----~L~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA----QIKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCCCchHHHHH
Confidence 444455566789999999999998874 445 46778889999999999999999998554 7899999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCcccHHHHHHHHHHHHHHHH
Q 006672 478 SNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGHKLAKEIHSKLEDIMAGAR 543 (636)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~ 543 (636)
+.+|...|+.+.|.+.|+...... +++|+-.++.++.+.++..+.
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~---------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC---------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh---------------------ccChhHHHHHHHHHHHHHHhh
Confidence 999999999999999999887632 236777777777776666553
No 132
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.13 E-value=3.9e-06 Score=52.56 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=31.6
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc
Q 006672 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNR 129 (636)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 129 (636)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.0015 Score=65.15 Aligned_cols=195 Identities=13% Similarity=0.116 Sum_probs=122.0
Q ss_pred CChHHHHHHhccCCC------CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHH
Q 006672 77 KSIDYALSIFDHFTP------KNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150 (636)
Q Consensus 77 g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 150 (636)
.++.+++..-++++. ++...+...+.+.........+-.++. +... -.-...-|...+. ....|.++.|+.
T Consensus 251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~-~~~~aa~YG~A~~-~~~~~~~d~A~~ 327 (484)
T COG4783 251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK-RGGLAAQYGRALQ-TYLAGQYDEALK 327 (484)
T ss_pred hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC-ccchHHHHHHHHH-HHHhcccchHHH
Confidence 345566666666663 344455555555444332222222222 2221 0112223433333 335677888888
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---C
Q 006672 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---K 227 (636)
Q Consensus 151 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~ 227 (636)
.+..+++. .+.|+.......+.+.+.|+.++|.+.++.+.... +-....+-.+..+|.+.|++.+|+.+++... +
T Consensus 328 ~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p 405 (484)
T COG4783 328 LLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP 405 (484)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence 88887765 35566677777778888888888888888877653 3335666777778888888888888877766 3
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
.|+..|..|..+|...|+..+|..-. ..+|...|++++|...+....+.
T Consensus 406 ~dp~~w~~LAqay~~~g~~~~a~~A~--------------AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 406 EDPNGWDLLAQAYAELGNRAEALLAR--------------AEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCchHHHHHHHHHHHhCchHHHHHHH--------------HHHHHhCCCHHHHHHHHHHHHHh
Confidence 46677888888888888777765543 34566778888888777777664
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.9e-06 Score=51.39 Aligned_cols=34 Identities=32% Similarity=0.769 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN 295 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 295 (636)
++||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999997
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=0.0027 Score=58.30 Aligned_cols=174 Identities=12% Similarity=0.099 Sum_probs=103.9
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-Chh
Q 006672 285 FQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-DLL 363 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~ 363 (636)
+.+.......+......-...|.+.+++++|.+..... .+......=+..+.+..+++-|.+.++.|.+- +-.
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~ 170 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA 170 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 33333333333333333344566667777766655431 12222222344455666777777777777763 334
Q ss_pred cHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 364 TWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 364 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
+.+-|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++....+ -..++++...+
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nl 247 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence 55545555443 34577888888888764 6778888888888888888888888888887742 33456666666
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+-.--..|...++.+ +-..++....|..
T Consensus 248 iv~a~~~Gkd~~~~~---r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTE---RNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHhCCChHHHH---HHHHHHHhcCCcc
Confidence 666666677655543 2334445556654
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.04 E-value=0.00072 Score=74.38 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
++-.+..+|-+.|+.++|...|+++.+.. +-|....+.+.-.++.. ++++|.+++..++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 34444555555555555555555555543 33444455555555544 5555555554443
No 137
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.02 E-value=8.5e-06 Score=50.61 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 006672 94 LHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP 127 (636)
Q Consensus 94 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 127 (636)
+.+||.+|.+|++.|+++.|+.+|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
No 138
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.00032 Score=76.23 Aligned_cols=166 Identities=13% Similarity=0.032 Sum_probs=128.9
Q ss_pred HHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH
Q 006672 270 GFSQNGEAEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI 347 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 347 (636)
.....+....+.+-+-+++. ...+.+...+..|..+....|.+++|..+++.+.+.. |.+......++..+.+.+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~ 136 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGI 136 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccH
Confidence 34444444444444433332 2345568888889999999999999999999998765 56677788899999999999
Q ss_pred HHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 348 EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 348 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
++|...+++... .+....+.+..++.+.|++++|+.+|+++.. ..|+ ..++.++..++-..|+.++|...|+..
T Consensus 137 eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 137 EAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999886 3456777888899999999999999999998 4455 678999999999999999999999999
Q ss_pred HhhcCCCCChhHHHHHH
Q 006672 424 RFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 424 ~~~~~~~p~~~~~~~l~ 440 (636)
.+. ..|...-|+.++
T Consensus 215 ~~~--~~~~~~~~~~~~ 229 (694)
T PRK15179 215 LDA--IGDGARKLTRRL 229 (694)
T ss_pred HHh--hCcchHHHHHHH
Confidence 852 345566665543
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.00 E-value=7.4e-05 Score=69.69 Aligned_cols=110 Identities=17% Similarity=0.135 Sum_probs=89.5
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVG 447 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g 447 (636)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+..+. +.|. ...|..|.-+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346678999999999999999 7776 55666777899999999999998888774 5565 678999999999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
++++|++.|+ ++++++|+|......|-.+-.+.+...
T Consensus 164 k~~~A~~ayk----KaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYK----KALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHH----hhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999887 566899999877777766555444433
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.00 E-value=0.00015 Score=72.92 Aligned_cols=123 Identities=11% Similarity=0.198 Sum_probs=98.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
.+++..+...++++.|+++|+++.+. .|+. ...++..+...++-.+|.+++++..++ .+-+.......++.|.+
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34555666678899999999999884 3553 334677777788888999998888752 33457777778888999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
.++++.|.++.+++ .++.|.+..+|..|+.+|...|++++|+..++.+-
T Consensus 247 k~~~~lAL~iAk~a----v~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKA----VELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHH----HHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999988755 47789999999999999999999999999988764
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0059 Score=55.75 Aligned_cols=193 Identities=15% Similarity=0.150 Sum_probs=133.6
Q ss_pred CCChHHHHHHHHHHHH---CC-CCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 274 NGEAEKALAMFFQMLD---AG-VRANDFT-VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 274 ~g~~~~A~~l~~~m~~---~g-~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
..+.++..+++.++.. .| ..|+..+ |-.++-+....|..+.|...++.+...- |-+..+...-.-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3467777777777764 34 5566654 4456667778888899998888887654 445454444444456678899
Q ss_pred HHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 349 AASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 349 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
+|.++++.+.+. |.+++-.-+......|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 999999888863 4556666666677778888888888887774 455688999999999999999999999998874
Q ss_pred hcCCCCC-hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 426 DYFIEPS-VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 426 ~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+.|. +..+..+.+.+.-.|. ++-|.++|. +.+++.|.+...+.
T Consensus 183 ---~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~----~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 183 ---IQPFNPLYFQRLAEVLYTQGGAENLELARKYYE----RALKLNPKNLRALF 229 (289)
T ss_pred ---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHhChHhHHHHH
Confidence 4454 5555667776655443 444555555 45577776555443
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.96 E-value=1.5e-05 Score=49.52 Aligned_cols=34 Identities=26% Similarity=0.595 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 294 (636)
+.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 143
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.93 E-value=0.00022 Score=61.07 Aligned_cols=88 Identities=11% Similarity=0.065 Sum_probs=40.3
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCCh
Q 006672 302 ALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRY 378 (636)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 378 (636)
+...+...|++++|.+.++.+...+ +.+...+..+...|.+.|++++|...|+.... .+...|..+...|...|++
T Consensus 23 ~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 23 LAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 3334444445555555544444432 33444444444444444444444444444332 2233444444445555555
Q ss_pred HHHHHHHHHHhH
Q 006672 379 EQAIQYFKKMMY 390 (636)
Q Consensus 379 ~~A~~~~~~m~~ 390 (636)
++|+..|++..+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 144
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=2.1e-05 Score=61.02 Aligned_cols=82 Identities=15% Similarity=0.226 Sum_probs=53.7
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
.|+++.|+.+++++.+.....|+...+-.++.+|.+.|++++|.+++++ .+.+|.++.....++.+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-----~~~~~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-----LKLDPSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-----HTHHHCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-----hCCCCCCHHHHHHHHHHHHHhCCHHH
Confidence 4667777777777765322122344555577777777777777777765 24455566666677888888888888
Q ss_pred HHHHHHH
Q 006672 490 VARVRTL 496 (636)
Q Consensus 490 A~~~~~~ 496 (636)
|++++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8888765
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.86 E-value=0.00046 Score=69.42 Aligned_cols=122 Identities=13% Similarity=0.083 Sum_probs=79.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHH
Q 006672 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEA 314 (636)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 314 (636)
+|+..+...++++.|..+|+++.+.+...+..++..+...++..+|.+++.+..... +-+...+..-...+.+.++.+.
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence 445555556777777777777776666666667777777777777777777777542 3344444444555666677777
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
|..+.+.+.+.. |.+..+|..|+.+|.+.|+++.|...++.++
T Consensus 253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777666553 4455566666666666666666666666655
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.78 E-value=0.00088 Score=58.13 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=78.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTV 438 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~ 438 (636)
|..++..+ ..++...+...++.+.+. .|+. .....+...+...|++++|...|+.+.. ....|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~-~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALA-NAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCHHHHHHHHHH
Confidence 33444444 367777777777777764 2332 2333344666777888888888887775 222222 223445
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
+..++...|++++|+..++.. .-.+..+..+..++.+|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-----~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-----PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-----cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777888888888877532 223345567778888888888888888887754
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.76 E-value=0.00081 Score=58.34 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=81.5
Q ss_pred cCCHHHHHHHHhhccCCChh------cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHH
Q 006672 344 CGNIEAASLVFGETKEKDLL------TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKL 415 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~ 415 (636)
.++...+...++.+...... ..-.+...+...|++++|...|+........|+ ......+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 56666666666666652221 233355677888999999999999998653333 2345556778889999999
Q ss_pred HHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 416 ALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
|+..++... +-...+..+...+++|.+.|+.++|...|+++
T Consensus 104 Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIP---DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhcc---CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999997643 22344667788999999999999999998854
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.70 E-value=5.3e-05 Score=45.76 Aligned_cols=31 Identities=32% Similarity=0.713 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV 292 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 292 (636)
++||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.69 E-value=4.6e-05 Score=46.02 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=24.8
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 006672 95 HIFNVLIRGLAENSHFQSCISHFVFMLRLSV 125 (636)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 125 (636)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887663
No 150
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00063 Score=53.48 Aligned_cols=92 Identities=11% Similarity=0.192 Sum_probs=55.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
.+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++. ...|.+..++..++.++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKAL----ELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCCCcchhHHHHHHHHH
Confidence 3444455556666666666655531 11223455556666666677777776666433 44566666777777777
Q ss_pred HHcCChhHHHHHHHHHHh
Q 006672 482 AAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~ 499 (636)
...|++++|...+++..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 777777777777766654
No 151
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.66 E-value=0.00014 Score=53.86 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=56.8
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG-RWKDVARVRTLMQR 499 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 499 (636)
++..|..++..+.+.|++++|+..|+++. +++|.++..|..++.+|...| ++++|++.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai----~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAI----ELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHH----HHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45678889999999999999999998655 669999999999999999999 79999999998876
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.0017 Score=53.95 Aligned_cols=94 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 439 (636)
+...+..+...|++++|.+.|+++... .|+ ...+..+..++...|++++|.+.|+.+.....-.| ....+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 344455555666666666666666552 222 12344455556666666666666666553221111 13445555
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..++.+.|+.++|...++++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHH
Confidence 555666666666666655443
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.0011 Score=55.10 Aligned_cols=100 Identities=12% Similarity=0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chh
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSS 473 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~ 473 (636)
.++..+...+...|++++|.+.|+.+.....-.| ....+..++.++.+.|++++|...++++. ...|.+ +.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~ 78 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVV----KKYPKSPKAPDA 78 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHH----HHCCCCCcccHH
Confidence 3556677788899999999999999986332111 24567779999999999999999999666 345654 567
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+..++.++.+.|++++|...++++.+..
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 8999999999999999999999998864
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.58 E-value=0.0015 Score=65.95 Aligned_cols=106 Identities=9% Similarity=0.075 Sum_probs=82.8
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRV 446 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 446 (636)
...+...|++++|+..|+++++ ..|+ ...|..+..+|...|++++|+..++++.. +.| +...|..++.+|...
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHh
Confidence 3455677899999999999988 5565 55777777888899999999999998875 344 477888888999999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
|++++|...++++ ++++|.++.....+..+..+
T Consensus 84 g~~~eA~~~~~~a----l~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 84 EEYQTAKAALEKG----ASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred CCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHH
Confidence 9999999988754 46788888877776655443
No 155
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.57 E-value=0.0024 Score=56.98 Aligned_cols=105 Identities=14% Similarity=0.134 Sum_probs=70.6
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTV 438 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 438 (636)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 44667777777778888888888888876422221 23677777788888888888888888764 2333 455566
Q ss_pred HHHHHH-------hcCCchHHHHHHHHHHH---HHhccCCC
Q 006672 439 VVNLLS-------RVGQDSQGYQNSQNSFT---KLLQLKPK 469 (636)
Q Consensus 439 l~~~~~-------~~g~~~~A~~~~~~~~~---~~~~l~p~ 469 (636)
+...+. +.|++++|...++++.. +.++.+|+
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~ 152 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPG 152 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 666666 78888877777775433 34555664
No 156
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.56 E-value=0.18 Score=54.47 Aligned_cols=209 Identities=11% Similarity=0.023 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHH--hhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHH
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISS--ASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFV 118 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 118 (636)
+..|.+..+.+++.. |+. .|...+.+ +.+.|+.++|..+++... ..|..|...+-..|...++.++|..+|+
T Consensus 25 fkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye 101 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYE 101 (932)
T ss_pred HHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 666777677766652 332 23333333 467899999998888554 4477788888899999999999999999
Q ss_pred HhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------hHHHHHHHh
Q 006672 119 FMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK----------TRGAFKVFD 188 (636)
Q Consensus 119 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~ 188 (636)
+... ..|+..-...+..++.+.+++..-.++--++-+. ++.+++.+=++++.+...-. ..-|.+.++
T Consensus 102 ~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 102 RANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9876 4577777777888888888887665555555443 45556655556666554321 234666666
Q ss_pred hCCCCC-CCCChhhHHHHHHHHHhcCChHHHHHHHhh-----CCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 006672 189 ETPEKN-KSESVLLWNVLINGCSKIGYLRKAVELFGM-----MPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE 258 (636)
Q Consensus 189 ~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (636)
.+.+.+ -..+..-...-...+-..|++++|++++.. ...-+...-+--++.+...+++.+..++-.++..
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 666443 112222222333445567888888888732 2233444555666777777777776665555443
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.016 Score=53.01 Aligned_cols=185 Identities=11% Similarity=0.083 Sum_probs=132.6
Q ss_pred CcHHHHHHHHHHHH---cC-CCCch-hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHH---HHHHHHHcCChHHHH
Q 006672 311 ALEAGVRVHNYISC---ND-FGLKG-AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA---MIWGLAIHGRYEQAI 382 (636)
Q Consensus 311 ~~~~a~~~~~~~~~---~~-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~ 382 (636)
+.++..+++..++. .| ..++. .++.-++-+...+|+.+.|...++++..+=+-++.. -.--+-..|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 44555555555442 22 33433 344556666778899999999998876521212111 111244579999999
Q ss_pred HHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 383 QYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 383 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
++++..++.+ +.|.+++..=+...-..|..-+|++-+....+ .+..|.+.|.-+.+.|...|++++|.--++++
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~--- 180 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL--- 180 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH---
Confidence 9999999865 23456776666666667888889888888875 46788999999999999999999999888754
Q ss_pred HhccCCCCchhHHHHHHHHHHcC---ChhHHHHHHHHHHhCCC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEG---RWKDVARVRTLMQRRSI 502 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~ 502 (636)
+-+.|.++..+..++..+...| +.+-|.+++.+..+...
T Consensus 181 -ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 -LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred -HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4678999999999999887766 45568888988887543
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.53 E-value=0.0003 Score=51.31 Aligned_cols=58 Identities=17% Similarity=0.319 Sum_probs=45.6
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++..+.+.|++++|.+.|+++ ++.+|.++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~----l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQA----LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHH----HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH----HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456677888888888888744 4677888888888888888888888888888888764
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.50 E-value=0.032 Score=54.54 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHc--CCCCc--h
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-----ANDF-TVVSALSACAKVGALEAGVRVHNYISCN--DFGLK--G 331 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~ 331 (636)
..+..++..+.+.|++++|.++|++....-.. ++.. .+...+-++...|+...|...++..... ++..+ .
T Consensus 156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~ 235 (282)
T PF14938_consen 156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREY 235 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHH
Confidence 34566777888888888888888887764322 1111 2222333445567777777777776543 22222 3
Q ss_pred hHHHHHhhHHhh--cCCHHHHHHHHhhccCCCh
Q 006672 332 AIGTALVDMYAK--CGNIEAASLVFGETKEKDL 362 (636)
Q Consensus 332 ~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~ 362 (636)
.....|+++|-. ...++.|..-|+.+.+-|.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 344555555533 3345666666666655443
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.50 E-value=0.0022 Score=57.50 Aligned_cols=97 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
.+..+...+...|++++|...|++..+...-.++ ...+..++.++.+.|++++|...++++. +..|.++..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~l 112 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQAL----ELNPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCcccHHHHHHH
Confidence 4455555566666666666666666531111111 3456666677777777777777666444 4567677777777
Q ss_pred HHHHHHcCC--------------hhHHHHHHHHHHh
Q 006672 478 SNIYAAEGR--------------WKDVARVRTLMQR 499 (636)
Q Consensus 478 ~~~~~~~g~--------------~~~A~~~~~~m~~ 499 (636)
+.+|...|+ +++|.+++++..+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 777766665 4556666666555
No 161
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.49 E-value=0.0012 Score=66.76 Aligned_cols=91 Identities=8% Similarity=0.159 Sum_probs=79.7
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
...+...|++++|+++|+++++ ..| +...|..+..+|.+.|++++|+..++++ ++++|.++..|..++.+|.
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A----l~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKA----IELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCcCCHHHHHHHHHHHH
Confidence 3456678999999999999985 334 5778899999999999999999998855 4679999999999999999
Q ss_pred HcCChhHHHHHHHHHHhCC
Q 006672 483 AEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g 501 (636)
..|++++|...+++..+.+
T Consensus 82 ~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HhCCHHHHHHHHHHHHHhC
Confidence 9999999999999998754
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.43 E-value=0.0021 Score=50.37 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
|..+...+...|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.++.... . .+.+...+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE-L-DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcchhHHHHHHHHH
Confidence 55566777778888888888888877 3444 35666677777788888888888887764 1 233446777788888
Q ss_pred HhcCCchHHHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~ 460 (636)
...|+.++|...++++.
T Consensus 79 ~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 79 YKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHhHHHHHHHHHHHH
Confidence 88888888888877543
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.43 E-value=0.00074 Score=63.21 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=77.4
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
-..+.+++++|+..|.+.++ +.| ++..|..-..+|.+.|.++.|++-.+ .++.++|....+|..|+.+|...
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce----~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCE----SALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHH----HHHhcChHHHHHHHHHHHHHHcc
Confidence 35678999999999999985 555 57788889999999999999998766 55689999999999999999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006672 485 GRWKDVARVRTLMQRR 500 (636)
Q Consensus 485 g~~~~A~~~~~~m~~~ 500 (636)
|++++|++.|++..+.
T Consensus 163 gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALEL 178 (304)
T ss_pred CcHHHHHHHHHhhhcc
Confidence 9999999999988773
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.42 E-value=0.0066 Score=64.15 Aligned_cols=136 Identities=14% Similarity=0.063 Sum_probs=91.5
Q ss_pred CChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhc--------CcHHHHHHHHHHhHh
Q 006672 360 KDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYS--------GQVKLALNFFDSMRF 425 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~--------g~~~~a~~~~~~m~~ 425 (636)
.|...|...+.+.... ++...|+.+|++..+ ..|+. ..+..+..++... .+...+.+..++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4666777777664332 236688888998888 77774 3444443333221 123344444444332
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
......++..|..+.-.....|++++|...++++. +++| +...|..++.+|...|+.++|.+.+++....+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl----~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI----DLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 11233456778777777777899999999888654 6788 678999999999999999999999999887553
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.40 E-value=0.066 Score=57.70 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=69.2
Q ss_pred hcCCHHHHHHHHhhCCCCCh-hhHHHHHHH--HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Q 006672 242 RKGDLKKAGELFEQMPEKGV-VSWTAMING--FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRV 318 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~-~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 318 (636)
..+++..|.....++..+.+ ..|...+.+ ..+.|+.++|..+++.....+.. |..|...+-..|.+.++.+++..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34566666666655543221 122223332 35667777777666665554433 666777676777777777777777
Q ss_pred HHHHHHcCCCCchhHHHHHhhHHhhcCCHH----HHHHHHhhccCCChhcHHH
Q 006672 319 HNYISCNDFGLKGAIGTALVDMYAKCGNIE----AASLVFGETKEKDLLTWTA 367 (636)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~~~~~~~~~~~~~~ 367 (636)
|+.+.+.. |+......+..+|.+.+.+. .|.+++...++..-..|+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 77766543 34555555666666655543 3555555554444444544
No 166
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0049 Score=60.17 Aligned_cols=90 Identities=9% Similarity=0.088 Sum_probs=61.6
Q ss_pred HhcCcHHHHHHHHHHhHh--hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 408 WYSGQVKLALNFFDSMRF--DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
.+.|.+..|.+.|.+.+. ...+.|+...|.....+..+.|++.+|+.--+++. +++|.-...|..-++++...+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al----~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL----KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh----hcCHHHHHHHHHHHHHHHHHH
Confidence 356677777777766652 11234446667777777778888888887766443 667766667777777788888
Q ss_pred ChhHHHHHHHHHHhCC
Q 006672 486 RWKDVARVRTLMQRRS 501 (636)
Q Consensus 486 ~~~~A~~~~~~m~~~g 501 (636)
+|++|.+-+++..+..
T Consensus 336 ~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888888888776643
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.37 E-value=0.0047 Score=52.83 Aligned_cols=88 Identities=10% Similarity=0.021 Sum_probs=52.7
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG 411 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 411 (636)
.+...+...|++++|.++|+-+.. .+..-|-.|..++...|++++|+..|..... +.|| +..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 344445556666666666665443 3445566666666666666666666666666 3344 445555556666666
Q ss_pred cHHHHHHHHHHhHh
Q 006672 412 QVKLALNFFDSMRF 425 (636)
Q Consensus 412 ~~~~a~~~~~~m~~ 425 (636)
+.+.|++.|+..+.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666666654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.36 E-value=0.0067 Score=54.37 Aligned_cols=117 Identities=13% Similarity=0.268 Sum_probs=58.6
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
.+..+...+...|++++|+..|++..+....++ ...+..+...+.+.|++++|...+++..+ ..| +...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 445555555556666666666666655322221 23455555556666666666666666553 222 244444555
Q ss_pred HHHHhcCC-------chHHHHHHHHHH---HHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 441 NLLSRVGQ-------DSQGYQNSQNSF---TKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 441 ~~~~~~g~-------~~~A~~~~~~~~---~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
.+|...|+ .++|...++++. ++.++++|++ |..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 55554443 333333333222 2344556654 5555555555553
No 169
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.36 E-value=0.067 Score=46.61 Aligned_cols=135 Identities=13% Similarity=0.063 Sum_probs=62.7
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 372 (636)
.|+...-..+..+....|+..+|...|++...--+..|..+...+.++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~---------------------------- 137 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI---------------------------- 137 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh----------------------------
Confidence 4444444445555555555555555555554333344444444444444444
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
+++..|...++++.+.+ |+ +.+...+..++...|.+.+|+.-|+.... .-|++..-......+.++|+.
T Consensus 138 ---~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 138 ---QEFAAAQQTLEDLMEYN--PAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRL 209 (251)
T ss_pred ---ccHHHHHHHHHHHhhcC--CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcch
Confidence 44555555555444421 21 11222333444555555555555555543 234444444444455555555
Q ss_pred hHHHHHHHHHHHHH
Q 006672 450 SQGYQNSQNSFTKL 463 (636)
Q Consensus 450 ~~A~~~~~~~~~~~ 463 (636)
++|..-+....+.+
T Consensus 210 ~ea~aq~~~v~d~~ 223 (251)
T COG4700 210 REANAQYVAVVDTA 223 (251)
T ss_pred hHHHHHHHHHHHHH
Confidence 55554444444333
No 170
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.32 E-value=0.0032 Score=56.23 Aligned_cols=116 Identities=7% Similarity=-0.018 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
+..+...+..+.+..-... ...+..+...+...|++++|...|++......-.+ ...+|..+..+|...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432212222 34566777778889999999999999975221111 245788999999999999999999
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHH-------HcCChhHHHHHHHHH
Q 006672 456 SQNSFTKLLQLKPKHPSSYVLLSNIYA-------AEGRWKDVARVRTLM 497 (636)
Q Consensus 456 ~~~~~~~~~~l~p~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~m 497 (636)
++++. +++|.....+..++.+|. ..|++++|...+++.
T Consensus 95 ~~~Al----~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQAL----ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHH----HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 98665 568888888999999988 778887666655544
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.26 E-value=0.00075 Score=52.17 Aligned_cols=80 Identities=18% Similarity=0.436 Sum_probs=54.4
Q ss_pred cCChHHHHHHHHHHhHcCCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHH
Q 006672 375 HGRYEQAIQYFKKMMYSGTE-PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQG 452 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 452 (636)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+ ..| +....-.++.+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 57888888888888874321 2344555577888888888888888877 21 222 234444557888888888888
Q ss_pred HHHHHH
Q 006672 453 YQNSQN 458 (636)
Q Consensus 453 ~~~~~~ 458 (636)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 888764
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.034 Score=51.13 Aligned_cols=134 Identities=10% Similarity=0.063 Sum_probs=84.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc-----CCCCchhHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN-----DFGLKGAIGTAL 337 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l 337 (636)
.-+.++..+.-.|.+.-.+.++.+..+...+.++.....+.+.-.+.|+.+.|...++.+.+. ++....-+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344566666667777777777777777655556666667777777777877777777766553 223333334444
Q ss_pred hhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
...|.-.+++.+|...|+++.. .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~ 320 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHY 320 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccc
Confidence 4456666777777777777665 3444445444444456777777777777777 444443
No 173
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.22 E-value=0.0028 Score=64.21 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=22.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 134 FVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
++++.|...|..+.+..++..-...|+-||.+++|.||+.+.+.|++..|.++...|
T Consensus 108 a~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~ 164 (429)
T PF10037_consen 108 ALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEM 164 (429)
T ss_pred HHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444444444444333333
No 174
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.19 E-value=0.004 Score=63.04 Aligned_cols=120 Identities=8% Similarity=0.017 Sum_probs=99.9
Q ss_pred CCCCChhHHHHHHHHhhcCCChHHHHHHhccCC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCccc
Q 006672 58 NLFASSRITTQLISSASLHKSIDYALSIFDHFT-PK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLT 131 (636)
Q Consensus 58 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 131 (636)
+...+......+++......+++.+..++-+.. .| -..+..++|+.|...|..+.++.++..=...|+-||.+|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 445566777788888888888888888876654 22 234567999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006672 132 YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQL 177 (636)
Q Consensus 132 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 177 (636)
++.|+..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999888777777776666666665
No 175
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.15 E-value=0.0022 Score=62.24 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=64.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHh----HcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh---hcCC-CCChh
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMM----YSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF---DYFI-EPSVK 434 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~~-~p~~~ 434 (636)
.|..|...|.-.|+++.|+..-+.=+ +-|-+.. ...+..+..++.-.|+++.|.+.|+.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 34444444445555555554433221 1121111 23455555555555566666555554321 0111 11123
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..-+|.+.|.-...++.|+.++.+-..-+-+++... ..++.+|+++|...|..+.|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333455555555555666666555554444443331 23555666666666666666666655554
No 176
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.14 E-value=0.0017 Score=49.27 Aligned_cols=67 Identities=10% Similarity=0.136 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...|+.+...|.+.|++++|++.++++.+..-...+++ ..++..++.+|...|++++|.+++++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45678888888888999999998888877632333322 45788899999999999999999987654
No 177
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.14 E-value=0.00034 Score=43.00 Aligned_cols=31 Identities=26% Similarity=0.629 Sum_probs=28.7
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
++.++++|+|+.+|..|+.+|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4677899999999999999999999999986
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.13 E-value=0.038 Score=54.00 Aligned_cols=98 Identities=12% Similarity=0.086 Sum_probs=59.2
Q ss_pred HHHHHHhc-CcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC--Cc-hhH
Q 006672 403 ILTACWYS-GQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK--HP-SSY 474 (636)
Q Consensus 403 ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~--~~-~~~ 474 (636)
+...|... |++++|.++|++...-+..... ...+..++.++.+.|++++|.++|++.....++..-. +. ..+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 34455555 7777777777766543222222 3455667788888899999999988776543322111 11 234
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 475 VLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
...+-++...|+...|.+.+++....
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45556777789999999999888764
No 179
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.015 Score=47.98 Aligned_cols=107 Identities=15% Similarity=0.122 Sum_probs=67.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--CchhHHHHHhhHH
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LKGAIGTALVDMY 341 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~ 341 (636)
.+..++-..|+.++|+.+|++....|.... ...+..+.+.+...|++++|..+++........ .+..+...+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345677788899999999998888876654 235556777788888888888888877754211 1223333344456
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHHHHHH
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGL 372 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 372 (636)
...|+.++|.+.+-...-++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777766554433333333333333
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.12 E-value=0.0045 Score=49.08 Aligned_cols=80 Identities=16% Similarity=0.031 Sum_probs=56.7
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHHCCC-CCCcccHHHHHHHHHccCC--------hHHHHHHHHHHHHhCCCCChhH
Q 006672 96 IFNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRLTYPFVSKSVASLSL--------LSLGRGLHCLIVKSGVEYDAFV 166 (636)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~ 166 (636)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++..- +.....+++.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999998 8999999999988765421 2334556666666666666666
Q ss_pred HHHHHHHHH
Q 006672 167 RVHLADMYV 175 (636)
Q Consensus 167 ~~~li~~~~ 175 (636)
|+.++..+.
T Consensus 107 Ynivl~~Ll 115 (120)
T PF08579_consen 107 YNIVLGSLL 115 (120)
T ss_pred HHHHHHHHH
Confidence 666665554
No 181
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.10 E-value=0.36 Score=48.11 Aligned_cols=132 Identities=14% Similarity=0.140 Sum_probs=89.6
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHH-HHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHH-TVV 439 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~l 439 (636)
...|...+..-.+....+.|..+|-+..+.| +.++...+++++.-+ ..|+...|.++|+.-... -||...| .-.
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~---f~d~~~y~~ky 472 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK---FPDSTLYKEKY 472 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh---CCCchHHHHHH
Confidence 3466777777777777888888888888877 455666777776544 457777888888766542 2443333 455
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
++.+.+.++-+.|..+|+...+++-+. .-..+|..++.--..-|+...|..+-++|.+
T Consensus 473 l~fLi~inde~naraLFetsv~r~~~~--q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERLEKT--QLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHHHHh--hhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 667778888888888888666654333 2235777777777777877777766666655
No 182
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.07 E-value=0.011 Score=57.42 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=66.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA-CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
+|..++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666665432 1122222222222 12234455566666666654 355566666666666
Q ss_pred hhcCCHHHHHHHHhhccC--C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 342 AKCGNIEAASLVFGETKE--K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.+.|+.+.|+.+|++... + --..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666554 1 223566666666666666666666666665
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.07 E-value=0.001 Score=48.94 Aligned_cols=51 Identities=16% Similarity=0.415 Sum_probs=31.9
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..|++++|.+.++++. +.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l----~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKAL----QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHH----HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666443 44666666666667777777777777666665554
No 184
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.05 E-value=0.026 Score=59.68 Aligned_cols=88 Identities=8% Similarity=0.063 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 379 EQAIQYFKKMMYSG-TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 379 ~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
..+.+..++..... ...+...+..+.-.....|++++|...++++.. +.|+...|..++..+...|+.++|.+.++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443321 222345666665556667999999999999885 55788899999999999999999999988
Q ss_pred HHHHHHhccCCCCchh
Q 006672 458 NSFTKLLQLKPKHPSS 473 (636)
Q Consensus 458 ~~~~~~~~l~p~~~~~ 473 (636)
++ +.++|.++..
T Consensus 478 ~A----~~L~P~~pt~ 489 (517)
T PRK10153 478 TA----FNLRPGENTL 489 (517)
T ss_pred HH----HhcCCCCchH
Confidence 55 4788987753
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.05 E-value=0.011 Score=57.56 Aligned_cols=127 Identities=11% Similarity=0.039 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh-cCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK-CGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
.+|..++..+.+.+..+.|+.+|..+.+.+ ..+..+|.....+-.+ .++.+.|.++|+...+ .+...|...+.-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456777777777777888888888887543 3344555555555333 3455558888877765 4666777777777
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPDG---TVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
...|+.+.|..+|++.... +.++. ..|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7778888888888887764 33222 3677777766677777777777777764
No 186
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.04 E-value=0.002 Score=48.19 Aligned_cols=57 Identities=11% Similarity=0.180 Sum_probs=46.1
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..|.+.+++++|.+.++++. +++|.++..|...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l----~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERAL----ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHH----HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46778888888888877544 6688888888888888888888888888888888754
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.03 E-value=0.048 Score=47.02 Aligned_cols=90 Identities=10% Similarity=0.014 Sum_probs=75.8
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
..-+...|++++|..+|.-+.. ++ .-+..-+..|..++-..+++++|...|..+. .++++||.++...+.+|..
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~-~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~----~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCI-YD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAF----TLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-hC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccCCCCccchHHHHHHH
Confidence 3345689999999999998874 32 3356677888899999999999999998665 5678899999999999999
Q ss_pred cCChhHHHHHHHHHHh
Q 006672 484 EGRWKDVARVRTLMQR 499 (636)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (636)
.|+.+.|...|+...+
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999998876
No 188
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.03 E-value=0.0077 Score=47.79 Aligned_cols=82 Identities=15% Similarity=0.058 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CcHHHHHHHHHHHHcCCCCchh
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVG--------ALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
.|-...|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. ++-....+|+.|+..++.|+..
T Consensus 26 ~t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 26 ETQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3455667777788999999999999999999 999999999999887643 2445677888899888999999
Q ss_pred HHHHHhhHHhh
Q 006672 333 IGTALVDMYAK 343 (636)
Q Consensus 333 ~~~~li~~~~~ 343 (636)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99988877654
No 189
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.03 E-value=0.43 Score=47.77 Aligned_cols=118 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred HHHcCC-hHHHHHHHHHHhHcCCCCCHH-----HHHHHHHHHHhc---CcHHHHHHHHHHhHhhcCCCCC----hhHHHH
Q 006672 372 LAIHGR-YEQAIQYFKKMMYSGTEPDGT-----VFLAILTACWYS---GQVKLALNFFDSMRFDYFIEPS----VKHHTV 438 (636)
Q Consensus 372 ~~~~g~-~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~---g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 438 (636)
+-+.|+ -++|+.+++...+ +.|... ++..+=.+|.++ ....+-..+-+-+. +.|+.|- .+.-|+
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-EVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCCcccccHHHHHHH
Confidence 334444 6788888888777 555432 233333444432 23334444433333 5777764 455667
Q ss_pred HHHH--HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 439 VVNL--LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 439 l~~~--~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
|.|+ +...|++.++.-.-. -+.++.| ++.+|-.++-+.....++++|..++..+
T Consensus 466 LaDAEyLysqgey~kc~~ys~----WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSS----WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHH----HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 7665 557888888776543 3446778 7888888888888888888888888865
No 190
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.011 Score=55.94 Aligned_cols=105 Identities=14% Similarity=0.071 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccCCCCch
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
|...|..|..+|...|+.+.|..-|....+- -.++++.+..+..++..+. ...++.++++ +.++++|.|..
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~----~al~~D~~~ir 228 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLR----QALALDPANIR 228 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH----HHHhcCCccHH
Confidence 3568888888888888888888888887652 2345667777776655432 2345666665 55688999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 506 (636)
+...|+..+...|++.+|...|+.|.+.....+|
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999987654433
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.00 E-value=0.12 Score=45.08 Aligned_cols=133 Identities=14% Similarity=0.179 Sum_probs=101.6
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
|++.---.|..++...|++.+|...|++...--..-|......+.++....++...|...++.+.+...-.-++...-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44445556788889999999999999998875455567788899999999999999999999987522112235566778
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
...|.-.|+.++|+.-|+.++.. -| ++..-......+.++|+.++|..-+...
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~----yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY----YP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh----CC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 88999999999999999977644 34 5556666677889999888775544443
No 192
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.98 E-value=0.046 Score=45.08 Aligned_cols=93 Identities=13% Similarity=0.250 Sum_probs=68.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLS 444 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~ 444 (636)
+..++-..|+.++|+.+|++....|+... ...+..+.+++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567778999999999999999887665 34677788889999999999999998876432111 2233334456778
Q ss_pred hcCCchHHHHHHHHHH
Q 006672 445 RVGQDSQGYQNSQNSF 460 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~ 460 (636)
..|+.++|.+.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 8899999988876443
No 193
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.97 E-value=0.65 Score=48.89 Aligned_cols=251 Identities=10% Similarity=0.101 Sum_probs=140.8
Q ss_pred hHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH-CCCCCCc--ccHHH--H--HHHHHccCChHHHHHH
Q 006672 79 IDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLR-LSVRPNR--LTYPF--V--SKSVASLSLLSLGRGL 151 (636)
Q Consensus 79 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~--~t~~~--l--l~~~~~~~~~~~a~~~ 151 (636)
+++|.+..+. .|.+..|..+.....+.-.++-|...|-+... .|++.-. .|..+ + ...-+--|.+++|+++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4566665554 45667788887777776677777777766543 2322100 00000 0 0111234778888887
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCCh
Q 006672 152 HCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNV 230 (636)
Q Consensus 152 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 230 (636)
+-.+-+.. ..|.++.+.|++-...++++.--.. .-+.-..+|+.+...++....|++|.++|..-..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--- 824 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--- 824 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---
Confidence 76665443 2466777888888777777542210 0012245788888888888888888888765431
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006672 231 ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310 (636)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 310 (636)
....+.+|.+..++++-+.+-..+++. ....-.|...+...|.-++|.+.|-+- + .|. ..+..|....
T Consensus 825 --~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~Ln 892 (1189)
T KOG2041|consen 825 --TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELN 892 (1189)
T ss_pred --hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHH
Confidence 123455555556666665555555543 344455667777777777777665322 1 121 2345566666
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHH--------------HHHhhHHhhcCCHHHHHHHHhhccC
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIG--------------TALVDMYAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~~~~ 359 (636)
++.+|.++-+... -|.+.+. .--|..+.+.|+.-+|.+++.+|.+
T Consensus 893 QW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 893 QWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 6666655543221 1111110 1124556677777677777766664
No 194
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.95 E-value=0.51 Score=47.27 Aligned_cols=135 Identities=10% Similarity=0.050 Sum_probs=89.5
Q ss_pred hhcCCChHHHHHHhccCCC---CCc------chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH--Hc
Q 006672 73 ASLHKSIDYALSIFDHFTP---KNL------HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--AS 141 (636)
Q Consensus 73 ~~~~g~~~~A~~~f~~~~~---~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~ 141 (636)
+-+.+++.+|.++|.++-. .+. +.-+.+|++|..+ +.+.....+....+ ..| ...|-.+..++ -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~--~~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQ--QFG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHH--hcC-CchHHHHHHHHHHHH
Confidence 4578999999999987752 222 2345677777655 34444444444444 234 55566776664 47
Q ss_pred cCChHHHHHHHHHHHHh--CCCCC------------hhHHHHHHHHHHhcCChHHHHHHHhhCCCC----CCCCChhhHH
Q 006672 142 LSLLSLGRGLHCLIVKS--GVEYD------------AFVRVHLADMYVQLGKTRGAFKVFDETPEK----NKSESVLLWN 203 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~--g~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~ 203 (636)
.+.+..|.+.+..-... +..|. -..-+..++.+...|++.+++.++++|... ...-++.+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 78899999988877765 33331 122366788888999999999998877543 3347888999
Q ss_pred HHHHHHHh
Q 006672 204 VLINGCSK 211 (636)
Q Consensus 204 ~li~~~~~ 211 (636)
.++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 86655544
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0037 Score=45.44 Aligned_cols=61 Identities=13% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
...+...|++++|...|+.+.+. .+-+...+..++.++.+.|++++|...++++. +.+|+|
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~----~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERAL----ELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH----HHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCcCC
Confidence 34556677777777777777641 12246666677777777777777777776544 446654
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.90 E-value=0.033 Score=50.13 Aligned_cols=115 Identities=17% Similarity=0.099 Sum_probs=78.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHH
Q 006672 293 RANDFTVVSALSACAKV-----GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA 367 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 367 (636)
..|..+|..++..+.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv----------------p~n 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV----------------PRN 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc----------------ccc
Confidence 45677777777777543 5667677778888889999999999999987754 3221 111
Q ss_pred HHHHHH--HcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcH-HHHHHHHHHhH
Q 006672 368 MIWGLA--IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV-KLALNFFDSMR 424 (636)
Q Consensus 368 li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~~~m~ 424 (636)
++.+-. ...+.+-|++++++|...|+-||..|+..+++.+.+.+.. .+..++.--|.
T Consensus 107 ~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 107 FFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111111 1235678999999999999999999999999998766643 33344433343
No 197
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.90 E-value=0.45 Score=46.67 Aligned_cols=283 Identities=17% Similarity=0.191 Sum_probs=164.4
Q ss_pred cCChHHHHHHHhhCC---CCChHHHHHHHHH--HHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCChHHHHHH
Q 006672 212 IGYLRKAVELFGMMP---KKNVASWVSLIDG--FMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGEAEKALAM 283 (636)
Q Consensus 212 ~g~~~~A~~~~~~m~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l 283 (636)
.|+-..|.++-.+.. ..|......|+.+ -.-.|++++|.+-|+.|.... ..-...|.-.-.+.|..+.|..+
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 345555555443332 2344333344433 334689999999999987532 11222233334567888888877
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC-CCCchhHH--HHHhhHHh---hcCCHHHHHHHHhhc
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIG--TALVDMYA---KCGNIEAASLVFGET 357 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~li~~~~---~~g~~~~A~~~~~~~ 357 (636)
-.+.-..- +--.......+...+..|+++.|+++.+.-.... +.++..-- ..|+.+-. -.-+...|...-.+.
T Consensus 177 Ae~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 77766542 2234566778888888999999999988766532 23332211 11221110 112344444444433
Q ss_pred cC--CChhcH-HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-h
Q 006672 358 KE--KDLLTW-TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-V 433 (636)
Q Consensus 358 ~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 433 (636)
.+ ||.+.- -.-..++.+.|+..++-.+++.+-+....|+ .+... ...+.|+ .+..-+++..+-..++|+ .
T Consensus 256 ~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nna 329 (531)
T COG3898 256 NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLY--VRARSGD--TALDRLKRAKKLESLKPNNA 329 (531)
T ss_pred hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccch
Confidence 33 454432 2334568888999999999999988544444 22211 2234443 344444444333345565 5
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc-CChhHHHHHHHHHHhCCCccCCee
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE-GRWKDVARVRTLMQRRSIKKDPGW 508 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~ 508 (636)
+....+..+-...|++..|..--+. .....| -.+.|..|.++-... |+-.++...+-+..+ -+.+|.+
T Consensus 330 es~~~va~aAlda~e~~~ARa~Aea----a~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~--APrdPaW 398 (531)
T COG3898 330 ESSLAVAEAALDAGEFSAARAKAEA----AAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVK--APRDPAW 398 (531)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHH----HhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhc--CCCCCcc
Confidence 6666777777788888888766553 335677 457888888887665 998888888877665 3445543
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.86 E-value=0.084 Score=50.07 Aligned_cols=55 Identities=11% Similarity=0.019 Sum_probs=28.3
Q ss_pred HHHHHHcCChHHHHHHHHHHhHc--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
..-|.+.|.+..|+.-++.+++. +..........+..+|...|..++|.+....+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34455566666666666666552 11112234445555666666666665555433
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.0031 Score=46.32 Aligned_cols=46 Identities=9% Similarity=0.096 Sum_probs=22.3
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
.|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++
T Consensus 4 ~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 49 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLE 49 (68)
T ss_dssp TTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555555555431 11234444455555555555555555554
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.83 E-value=0.04 Score=50.69 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC----CCCChhHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYF----IEPSVKHHTVV 439 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~l 439 (636)
.-+.++..+.-+|.+.-.+.++.+.++...+.++.....+.+.-.+.|+.+.|..+|+...+..+ +.-.......+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777788888899999999866566677888888888899999999999997765332 22223333344
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
...|.-++++.+|...+. +.++.+|.++...+.-+-+..-.|+..+|.+..+.|.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~----~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFT----EILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhheecccchHHHHHHHh----hccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 455666778888888776 4557799999988888888888899999999999998854
No 201
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.85 Score=48.61 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=82.5
Q ss_pred HHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcH
Q 006672 334 GTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV 413 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~ 413 (636)
.+--+.-+..-|+...|.++-.+..-||-..|-.-+.+++..+++++-+++-+.+.. +.-|.-...+|.+.|+.
T Consensus 687 l~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 687 LHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccH
Confidence 344455566678899999999988888988888889999999998887776655432 45566678899999999
Q ss_pred HHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 414 KLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 414 ~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
++|.+++.+... . . -.+.+|.+.|++.+|.++--
T Consensus 761 ~EA~KYiprv~~---l---~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 761 DEAKKYIPRVGG---L---Q----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhhhhhccCC---h---H----HHHHHHHHhccHHHHHHHHH
Confidence 999998875531 1 1 47788999999988887643
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.76 E-value=0.029 Score=50.45 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=69.9
Q ss_pred HHHhhc--cCCChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc--------------
Q 006672 352 LVFGET--KEKDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-------------- 410 (636)
Q Consensus 352 ~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-------------- 410 (636)
..|+.. ..+|-.+|..++..|.+. |..+=....++.|.+-|+.-|..+|+.||..+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344443 335556666666666543 56666666777777777777777888777765431
Q ss_pred --CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 411 --GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 411 --g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
.+-+-|++++++|. .+|+.||.+++..+++.+++.+..
T Consensus 115 yp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 34577999999998 599999999999999999887653
No 203
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.75 E-value=0.0067 Score=44.65 Aligned_cols=61 Identities=23% Similarity=0.363 Sum_probs=32.4
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC-cHHHHHHHHHHhH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG-QVKLALNFFDSMR 424 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g-~~~~a~~~~~~m~ 424 (636)
...|..+...+...|++++|+..|++.++ +.|+ ...|..+..++...| ++++|++.+++..
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34455555555555555555555555555 3444 234445555555555 4555555555544
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.70 E-value=0.0066 Score=60.98 Aligned_cols=59 Identities=12% Similarity=0.046 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh----hHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV----KHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
..++.+..+|...|++++|...|++..+ +.|+. ..|..+..+|...|++++|++.++++
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3555555555555555555555555553 33442 12555555555555555555555543
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.69 E-value=0.032 Score=53.33 Aligned_cols=94 Identities=18% Similarity=0.186 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVV 439 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 439 (636)
|...+..+.+.|++++|+..|+.+++ ..|+. ..+..+..+|...|++++|...|+.+.+.+.-.|. ...+-.+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 44444444556777777777777777 44443 35556666777777777777777777654332222 4445555
Q ss_pred HHHHHhcCCchHHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~ 460 (636)
+..+...|+.++|.+.+++..
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 666667777777777776443
No 206
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.60 E-value=0.2 Score=52.02 Aligned_cols=55 Identities=9% Similarity=0.025 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 359 (636)
..++..+..-+-+...+..|.++|..+-.. .+++++....+++.+|..+-++.++
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 344444444445566677777777765422 3567777888888888888887776
No 207
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.9 Score=45.03 Aligned_cols=151 Identities=15% Similarity=0.056 Sum_probs=76.6
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChh-hHHHHH--HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH---HH-------
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVV-SWTAMI--NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA---LS------- 304 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~------- 304 (636)
.++.-.|+.++|..+--.+.+.|.. .+...+ .++.-+++.+.|...|++.+.. .|+...-.+. ..
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~ 254 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKE 254 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHh
Confidence 3455566766666665554444322 222222 2344566777777777777654 3443322211 11
Q ss_pred ---HHHhcCCcHHHHHHHHHHHHc---CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-cHHHH--HHHHHHc
Q 006672 305 ---ACAKVGALEAGVRVHNYISCN---DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-TWTAM--IWGLAIH 375 (636)
Q Consensus 305 ---~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~l--i~~~~~~ 375 (636)
-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|..--++..+-|.. .+..+ ..++...
T Consensus 255 ~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 255 RGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 123456666666666666542 23344555555555666666666666666555553332 22222 2233344
Q ss_pred CChHHHHHHHHHHhH
Q 006672 376 GRYEQAIQYFKKMMY 390 (636)
Q Consensus 376 g~~~~A~~~~~~m~~ 390 (636)
+++++|.+-|++..+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 556666666655554
No 208
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.57 E-value=0.27 Score=46.67 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDA--GVRANDFTVVSALSACAKVGALEAGVRVHNY 321 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 321 (636)
+..-|.+.|.+..|..-|+.+.+. +.+........+..++...|..++|......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 344566666666666666666652 2233334445555566666666655555443
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.49 E-value=0.047 Score=52.25 Aligned_cols=103 Identities=12% Similarity=0.054 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
..|...+......|++++|...|+.+.+.+.-.+ .+..+--++.+|...|++++|...|+.+.+.- ..+|..+.++..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~k 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHH
Confidence 3455555555667999999999999987442221 13567788999999999999999999766431 223335667777
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.+|...|++++|.+++++..+.-
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999999988753
No 210
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.44 E-value=1.1 Score=44.31 Aligned_cols=106 Identities=17% Similarity=0.202 Sum_probs=84.0
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHH
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVK 414 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 414 (636)
+.-+.-+...|+...|.++-.+-.-|+-..|-..+.+|+..+++++-.++... +-.++-|..++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455556678889999998888889999999999999999999887765432 123578888999999999999
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
+|..+..++. +..-+.+|.++|++.+|.+.--
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 9999988743 1456788999999999987754
No 211
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.41 E-value=0.006 Score=40.17 Aligned_cols=42 Identities=17% Similarity=0.338 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
..+..+...|.+.|++++|++.++++. +.+|+|+..|..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l----~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL----ALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HHCcCCHHHHHHhhh
Confidence 467788889999999999999988554 668999988887764
No 212
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.35 E-value=1.2 Score=43.96 Aligned_cols=104 Identities=17% Similarity=0.107 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
+..|.-+...|+...|.++-.+.. -||..-|-..+.+++..++|++-.++... .-++.-|...++.+.+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHH
Confidence 333444455555555555544431 24555555556666666666655543321 1223445555666666
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.|+..+|..++.++ .+..-+..|.+.|+|.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~-------------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI-------------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC-------------ChHHHHHHHHHCCCHHHHHHH
Confidence 66666666555421 113344555566666665444
No 213
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.34 E-value=0.047 Score=53.41 Aligned_cols=137 Identities=12% Similarity=0.093 Sum_probs=92.5
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC---------CChhcHHHHHHHHHHcCChHHHHHHHHHHhH----cCCC-CCHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE---------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTE-PDGT 398 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~-p~~~ 398 (636)
.|..|...|.-.|+++.|...-+.=.+ ..-..+..+..++.-.|+++.|.+.|+.... .|-+ ....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344555556666777777655432111 1234677888888888999999998887543 2222 1234
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHh---hc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRF---DY-FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
+..+|..+|.-...++.|+.++.+-.. +. ...-....+.+|..+|...|..++|+.+.+...+..++++..
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~ 351 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDT 351 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCc
Confidence 566777888888888999988876542 11 122335678889999999999999999988888776666544
No 214
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.32 E-value=0.055 Score=55.96 Aligned_cols=61 Identities=7% Similarity=0.102 Sum_probs=37.6
Q ss_pred ccccCCCCCCCCHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhcc
Q 006672 19 IKSSHKPSNNITETHIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDH 88 (636)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 88 (636)
+..+...+..|+..-++..++-.+.+.+|.++|. +.|.. |.-+.+|...+.++.|.++...
T Consensus 623 L~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk---~~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 623 LEERKKRGETPNDLLLADVFAYQGKFHEAAKLFK---RSGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHH---HcCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 3334444556777777777776677777776664 34432 4556667777777777776643
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.26 E-value=2 Score=45.49 Aligned_cols=182 Identities=14% Similarity=0.081 Sum_probs=88.4
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCCC-CCcch------------HHHHHHHHHhCCCchHHHHHHHHhHHCCCC
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFTP-KNLHI------------FNVLIRGLAENSHFQSCISHFVFMLRLSVR 126 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 126 (636)
.|.+..|..|.......-.++.|...|-+... +.+.. -.+=|. +--|++++|.++|-+|-+.++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 47888888777776666777777777755431 11111 111122 224788888888887765432
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhhCC-----------
Q 006672 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYD----AFVRVHLADMYVQLGKTRGAFKVFDETP----------- 191 (636)
Q Consensus 127 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~----------- 191 (636)
.+....+.|++-...++++. -|-..| ...++.+.+.++....+++|.+.|..-.
T Consensus 766 --------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~ 834 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYR 834 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHH
Confidence 23333444444433333211 011111 1134444444444444444444443221
Q ss_pred ----------CCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 006672 192 ----------EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (636)
Q Consensus 192 ----------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 260 (636)
...++.|....-.|...+.+.|.-++|.+.|-+-..|. +.+..+...+++.+|.++-++..-|.
T Consensus 835 le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l~q 908 (1189)
T KOG2041|consen 835 LELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQLPQ 908 (1189)
T ss_pred HHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccchh
Confidence 01123344445555566666666666665554443332 22334444555555555555444333
No 216
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.15 E-value=1.5 Score=43.13 Aligned_cols=290 Identities=12% Similarity=0.049 Sum_probs=154.4
Q ss_pred HHHHHHHHHh--CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH--HccCChHHHHHHHHHHHHhCCCCChhH--HHHH
Q 006672 97 FNVLIRGLAE--NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV--ASLSLLSLGRGLHCLIVKSGVEYDAFV--RVHL 170 (636)
Q Consensus 97 ~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~l 170 (636)
|.+|-.++.. .|+-..|.++-.+-... +.-|......+|.+- .-.|+++.|++-|+-|... |.... .-.|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHH
Confidence 5555555443 45555555554443321 334555555555442 2456667777777666542 11111 1111
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
.-.--+.|..+.|+..-++.-+.- +.-...+...+...+..|+|+.|+++++.-...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~---------------------- 217 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAA---------------------- 217 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH----------------------
Confidence 112234566666655555443322 223455566666666666666666665443210
Q ss_pred HHHhhCCCCChh--hHHHHHHHH---HhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006672 251 ELFEQMPEKGVV--SWTAMINGF---SQNGEAEKALAMFFQMLDAGVRANDFT-VVSALSACAKVGALEAGVRVHNYISC 324 (636)
Q Consensus 251 ~~~~~~~~~~~~--~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (636)
...++++. .-..|+.+- .-..+...|...-.+..+ +.||-.- -.....++.+.|++.++-.+++.+-+
T Consensus 218 ----~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 218 ----KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred ----HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 01122211 111111111 112234445444433333 3455332 22344567788888888888888877
Q ss_pred cCCCCchhHHHHHhhHHhhcCCHHHH----HHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHH
Q 006672 325 NDFGLKGAIGTALVDMYAKCGNIEAA----SLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
....| .+... -.+.+.|+.... .+-+..|...+..+--+...+-...|++..|..--+.... ..|....|
T Consensus 292 ~ePHP--~ia~l--Y~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 292 AEPHP--DIALL--YVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred cCCCh--HHHHH--HHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 65333 33322 234455543222 1235567777888888888888888998888777777666 67888888
Q ss_pred HHHHHHH-HhcCcHHHHHHHHHHhHh
Q 006672 401 LAILTAC-WYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 401 ~~ll~a~-~~~g~~~~a~~~~~~m~~ 425 (636)
..+...- ...|+-.++.+.+.+..+
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhc
Confidence 7777644 455999999998888774
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.04 E-value=0.025 Score=42.74 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhh---cCC-CCC-hhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFD---YFI-EPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
+++.+...|...|++++|+.+|++..+- .|- .|. ..++..++.+|.+.|++++|++.++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666666555421 111 121 4566777777777777777777777554
No 218
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.01 E-value=0.064 Score=43.71 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=63.8
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chhHHHHHHHHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSSYVLLSNIYA 482 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~~~~l~~~~~ 482 (636)
+.+..|+.+.|++.|.+... -.+..+..||.-..+|.-+|+.++|++-++++.+-. .|.. -.+|..-+.+|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa---g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELA---GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHH
Confidence 45667788888888877763 223456778888888888888888887777555321 2221 235667777888
Q ss_pred HcCChhHHHHHHHHHHhCCC
Q 006672 483 AEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~ 502 (636)
..|+-+.|..-|+..-+.|-
T Consensus 127 l~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HhCchHHHHHhHHHHHHhCC
Confidence 88888888888888877764
No 219
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.95 E-value=0.15 Score=44.17 Aligned_cols=67 Identities=25% Similarity=0.311 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccC
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR-----RSIKKD 505 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~ 505 (636)
....++..+...|++++|.+..++ ++..+|-|...|..++.+|...|+..+|.++|+++.+ .|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~----~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQR----ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHH----HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHH----HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 445677788899999999998874 4577999999999999999999999999999998753 466554
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.88 E-value=1.4 Score=40.58 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=30.2
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDAGV--RANDFTVVSALSACAKVGALEAGVRVHNYISCN 325 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (636)
....+.+.|++++|...|+++...-. +--......+..++-+.|+++.|...++..++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455666666666666666665311 111223334455555666666666666665543
No 221
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.85 E-value=0.1 Score=43.51 Aligned_cols=53 Identities=21% Similarity=0.274 Sum_probs=44.5
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 391 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
....|+..+..+++.+|+..|++..|.++.+...+.++++-+...|..|+.-.
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34678888999999999999999999999999988899888888888777543
No 222
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.83 E-value=0.29 Score=40.09 Aligned_cols=96 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcC
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVG 447 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g 447 (636)
+++..|+.+.|++.|.+.+. +-|. ...|+.-..++.-.|+.++|++-+++..+-.|-+.. -..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556677777777777666 4443 456777677777777777777766666543333221 223444455677777
Q ss_pred CchHHHHHHHHHH--------HHHhccCC
Q 006672 448 QDSQGYQNSQNSF--------TKLLQLKP 468 (636)
Q Consensus 448 ~~~~A~~~~~~~~--------~~~~~l~p 468 (636)
+.+.|..-|+.++ +++++++|
T Consensus 130 ~dd~AR~DFe~AA~LGS~FAr~QLV~lNP 158 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSKFAREQLVELNP 158 (175)
T ss_pred chHHHHHhHHHHHHhCCHHHHHHHHhcCh
Confidence 7777777777444 34556666
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.27 Score=46.74 Aligned_cols=96 Identities=11% Similarity=0.060 Sum_probs=57.4
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcC---ChHHHHHHHHHHhHcCCCCCHH-HH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG---RYEQAIQYFKKMMYSGTEPDGT-VF 400 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~-t~ 400 (636)
|.|..-|-.|...|...|+.+.|..-|.+..+ +|...+..+..++.... ...++..+|++++. ..|+.+ +.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHHH
Confidence 55666666666666666666666666665443 45555555555544322 23566677777766 555544 34
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
..|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444566677777777777777764
No 224
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.80 E-value=0.047 Score=40.59 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=38.2
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchh
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS 473 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~ 473 (636)
..|.+.+++++|.++++.+.. . .+.++..+...+.+|.+.|++++|.+.++++. +..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~-~-~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l----~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALE-L-DPDDPELWLQRARCLFQLGRYEEALEDLERAL----ELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHH-h-CcccchhhHHHHHHHHHhccHHHHHHHHHHHH----HHCCCcHHH
Confidence 345666677777777776664 1 12245566666677777777777777766444 446655443
No 225
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.56 E-value=2 Score=41.82 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCC---CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-----CCchh
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLD-AGVRA---NDFTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGA 332 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 332 (636)
.+|-.+..++-+.-++.+++.+-..-.. .|..| .-....++..+....+.++++.+.|+...+... .....
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 4555666666666666666655443332 12222 112333456666777778888887777664211 12345
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC-------CChh------cHHHHHHHHHHcCChHHHHHHHHHHhH----cCCCC
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE-------KDLL------TWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEP 395 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~------~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p 395 (636)
++.+|...|.+..++++|.-...+..+ .|.. +.-.|.-++...|....|.+..++..+ .|-.|
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra 243 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRA 243 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChH
Confidence 777888888888888776554433322 2322 222345567777888888777777544 34333
Q ss_pred C-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 396 D-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 396 ~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
. ......+...|...|+.|.|+.-|+...
T Consensus 244 ~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 244 LQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3 2345556677888888888887777653
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.48 E-value=0.47 Score=43.72 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=37.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 236 LIDGFMRKGDLKKAGELFEQMPE--KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
....+...|++++|...|+.+.. |+ ..+.-.++.++.+.|++++|...|++..+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445667777777777777653 11 345556788888999999999999888764
No 227
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.45 E-value=1.6 Score=43.60 Aligned_cols=161 Identities=14% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccCC-------ChhcHHHHHHHHHH---cCChHHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 405 (636)
.++-.|....+++.-.++.+.+... ....-....-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3333455556666666666555542 11111123334444 5677777777777555545556666655554
Q ss_pred HHH----h-----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH--------HHHhccCC
Q 006672 406 ACW----Y-----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF--------TKLLQLKP 468 (636)
Q Consensus 406 a~~----~-----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~l~p 468 (636)
.|- . ....++|...|.+.- .+.|+..+--.++.++.-.|...+...-.++.. +++. +++
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-~~~ 301 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-LEK 301 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-ccc
Confidence 432 1 223566777666543 355654444444445555554333322222111 1111 112
Q ss_pred -CCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 469 -KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 469 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.=.+.++..++.-.|+.++|.+..++|.+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 12223447888888999999999999999875
No 228
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.72 Score=43.77 Aligned_cols=144 Identities=12% Similarity=0.119 Sum_probs=100.7
Q ss_pred HHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 349 AASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
...+.+++...+....--.-.......|++.+|..+|+.... ..|+ ...-..+..+|...|+++.|..++..+-.+
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~- 197 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ- 197 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-
Confidence 444555555544222222233456678999999999999988 3444 456667788999999999999999877531
Q ss_pred CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 428 FIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 428 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..-+ ......-+..+.+.....+..++-.+. .-+|+|...-..|+..|...|+.++|.+.+-.+.+++
T Consensus 198 -~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~-----aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 198 -AQDKAAHGLQAQIELLEQAAATPEIQDLQRRL-----AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred -chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1111 122234567777777777766665543 4589999999999999999999999999888776654
No 229
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=2.5 Score=38.99 Aligned_cols=196 Identities=15% Similarity=0.132 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHc-CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CCh-hcHHHHHH-H
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCN-DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDL-LTWTAMIW-G 371 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~ 371 (636)
.........+...+.+..+...+...... ........+..+...+...++...+.+.+..... ++. ..+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 44444555555556666655555555432 2234445555555566666666666666666554 211 22233333 6
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCC----CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEP----DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRV 446 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~ 446 (636)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7778888888888888755 333 223444444446677888888888888774 1223 366777788888888
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.+++|...+..+. ...|.....+..+...+...|.++++...+.+....
T Consensus 216 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKAL----ELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHH----hhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888887554 345544556666777777667788888887777664
No 230
>PRK11906 transcriptional regulator; Provisional
Probab=95.20 E-value=0.81 Score=46.55 Aligned_cols=133 Identities=10% Similarity=-0.002 Sum_probs=91.3
Q ss_pred hcH--HHHHHHHHHc-----CChHHHHHHHHHHh-HcCCCCCH-HHHHHHHHHHHh---------cCcHHHHHHHHHHhH
Q 006672 363 LTW--TAMIWGLAIH-----GRYEQAIQYFKKMM-YSGTEPDG-TVFLAILTACWY---------SGQVKLALNFFDSMR 424 (636)
Q Consensus 363 ~~~--~~li~~~~~~-----g~~~~A~~~~~~m~-~~g~~p~~-~t~~~ll~a~~~---------~g~~~~a~~~~~~m~ 424 (636)
..| ..++.+.... ...+.|+.+|.+.. .+.+.|+. ..|..+..++.. .....+|.++-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554431 23467888888888 22377773 344443332221 234556677777666
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+ . -+-|+.....++.++.-.|+++.|...|+++. .++|+.+.+|...+....-+|+.++|.+.+++..+..
T Consensus 332 e-l-d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~----~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 332 D-I-TTVDGKILAIMGLITGLSGQAKVSHILFEQAK----IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred h-c-CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHh----hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 4 2 23457777778888888888999999998554 7899999999999999999999999999999876643
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.07 E-value=0.2 Score=43.38 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=42.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH----hhcCCCCChhH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR----FDYFIEPSVKH 435 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 435 (636)
....++..+...|++++|+.+.+++.. ..|. ...+..++.++...|+..+|.+.|+.+. ++.|+.|++.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344556666677777777777777777 4444 4577777777777777777777776653 34577777654
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.01 E-value=2 Score=36.70 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhc
Q 006672 133 PFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI 212 (636)
Q Consensus 133 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 212 (636)
..++..+...+........++.+.+.+ ..+....|.++..|++.+ ..+..+.++. ..+......++..|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence 344455554555555555555555554 245556666666666543 2333344431 11223334455555555
Q ss_pred CChHHHHHHHhhCCCCChHHHHHHHHHHHhc-CCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 006672 213 GYLRKAVELFGMMPKKNVASWVSLIDGFMRK-GDLKKAGELFEQMPEKGVVSWTAMINGFS 272 (636)
Q Consensus 213 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 272 (636)
+.++++.-++.++.. +...+..+.+. ++++.|.+.+.+- .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 555555555544421 11112222222 5555555555542 23345555554443
No 233
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.89 E-value=0.47 Score=46.97 Aligned_cols=106 Identities=10% Similarity=0.018 Sum_probs=74.1
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
.+.|.+.|++..|...|++.+.. -+. ...-+.++..... ..-...+..+.-.|.+.+.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~---------~~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAE---------ALKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHH---------HHHHHHhhHHHHHHHhhhh
Confidence 45677778888888887776651 111 0111112221111 1123456778888889999
Q ss_pred chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.+|++..+ +.++++|+|.-....=+.+|...|+++.|+..|+++++.
T Consensus 273 ~~~Ai~~c~----kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 273 YKEAIESCN----KVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHHHHHHH----HHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999988776 556889999999999999999999999999999999883
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.83 E-value=0.48 Score=44.48 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTV 438 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 438 (636)
.|+.-+..| +.|++..|...|...++.. |+ ...+-.|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 366555544 5677888888888888742 33 234556778888888888888888888877766665 477778
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
++....+.|+.++|...+++..++ -|..+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~----YP~t~a 250 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR----YPGTDA 250 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH----CCCCHH
Confidence 888888888888888888866544 565443
No 235
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.66 E-value=4.6 Score=39.26 Aligned_cols=132 Identities=9% Similarity=0.081 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHC--------CCCCCH-----HHHHHHHHHHHhcCCcH---HHHHHHHHHHHcCC
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDA--------GVRAND-----FTVVSALSACAKVGALE---AGVRVHNYISCNDF 327 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~ 327 (636)
||.-...+.+..++++|..++++..+. ...|+. .++..++.++...+..+ .|..+.+.+. ...
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~-~e~ 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE-SEY 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH-HhC
Confidence 443333333333777777766665432 122332 23445555555555443 3333444443 222
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHH--cCChHHHHHHHHHHhHcCCCCC
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAI--HGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
+..+.++..-++.+.+.++.+++.+++.+|... ....+...+..+.. ......|...+..++...+.|.
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence 333444444455555566666666666666541 22344444444311 1223445555555544434444
No 236
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.64 E-value=1 Score=38.08 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
...+.|++++|.+.|+.+...+...|- ....-.++.+|.+.|++++|...+++ .++++|.++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r----FirLhP~hp 81 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR----FIRLHPTHP 81 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH----HHHhCCCCC
Confidence 344667777777777777654433332 34455667777777777777776663 346676654
No 237
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=94.59 E-value=2.4 Score=42.42 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHhcCCHHHHHHHHhhCCCC---C----hhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 237 IDGFMRKGDLKKAGELFEQMPEK---G----VVSWTAMINGFSQ---NGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
+-.|....+++...++.+.+... + ...--..+-++-+ .|+.++|++++..+....-.+++.|+..+...|
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 33455555556555565555432 1 1111122334444 677777777777755555566667776665554
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.41 E-value=0.17 Score=51.18 Aligned_cols=64 Identities=11% Similarity=0.004 Sum_probs=51.2
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CCh----hcHHHHHHHHHHcCChHHHHHHHHHHhHc
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDL----LTWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (636)
+.+...++.+..+|.+.|++++|...|++..+ |+. .+|..+..+|...|+.++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677888888888888888888888888664 432 35888888888888888888888888874
No 239
>PRK11906 transcriptional regulator; Provisional
Probab=94.37 E-value=2 Score=43.85 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
...+|.++-++..+ +.|+ +.....+..+....++++.|...|++... +.|+ +..|........-+|+.++|.+
T Consensus 319 ~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~---L~Pn~A~~~~~~~~~~~~~G~~~~a~~ 393 (458)
T PRK11906 319 AAQKALELLDYVSD--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI---HSTDIASLYYYRALVHFHNEKIEEARI 393 (458)
T ss_pred HHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh---cCCccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34567777777777 4444 55666666666777788999999988874 6676 5566667777777899999988
Q ss_pred HHHHHHHHHhccCCCCchh--HHHHHHHHHHcCChhHHHHHHH
Q 006672 455 NSQNSFTKLLQLKPKHPSS--YVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 455 ~~~~~~~~~~~l~p~~~~~--~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
.+++ .++++|.-..+ ....++.|...+ .++|++++-
T Consensus 394 ~i~~----alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 431 (458)
T PRK11906 394 CIDK----SLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLYY 431 (458)
T ss_pred HHHH----HhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHHh
Confidence 8874 44778864432 333344555554 566666653
No 240
>PRK09687 putative lyase; Provisional
Probab=94.37 E-value=5.4 Score=38.75 Aligned_cols=236 Identities=11% Similarity=-0.009 Sum_probs=116.5
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCc----hHHHHHHHHhHHCCCCCCcccHHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHF----QSCISHFVFMLRLSVRPNRLTYPFV 135 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~l 135 (636)
.++..+....+..+...|..+-...+..-...+|...-...+.++.+.|+. .+++..+..+... .|+...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 456666666777777776544433333333455666666666777777654 3566667666332 2454444455
Q ss_pred HHHHHccCChHH--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC
Q 006672 136 SKSVASLSLLSL--GRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG 213 (636)
Q Consensus 136 l~~~~~~~~~~~--a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 213 (636)
+.+++..+.... .....+.+...-..++..+.-..+.++.+.|+. +|...+-.+.+ .+|...-...+.++.+.+
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE-AAIPLLINLLK---DPNGDVRNWAAFALNSNK 187 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc---CCCHHHHHHHHHHHhcCC
Confidence 555554432110 112222222222344666666667777666653 44444444443 233333333444444432
Q ss_pred -ChHHHHHH-HhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 006672 214 -YLRKAVEL-FGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG 291 (636)
Q Consensus 214 -~~~~A~~~-~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 291 (636)
....+... ...+..+|..+....+.++++.|+..-.-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+.
T Consensus 188 ~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~- 263 (280)
T PRK09687 188 YDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK- 263 (280)
T ss_pred CCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh-
Confidence 12233333 333334566666666666666666433333333333333 223455556666664 466666665543
Q ss_pred CCCCHHHHHHHHHHH
Q 006672 292 VRANDFTVVSALSAC 306 (636)
Q Consensus 292 ~~p~~~t~~~ll~~~ 306 (636)
.||...-...+.+|
T Consensus 264 -~~d~~v~~~a~~a~ 277 (280)
T PRK09687 264 -FDDNEIITKAIDKL 277 (280)
T ss_pred -CCChhHHHHHHHHH
Confidence 23544444444443
No 241
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=9.7 Score=41.63 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=115.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCcchHH----HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH
Q 006672 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFN----VLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVA 140 (636)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 140 (636)
....-++++.+...++.|..+-..-.. +...-. .-.+-+-+.|++++|..-|-+-... +.| ..+++-+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfL 408 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFL 408 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence 445667778888888888887765432 222222 2233456789999999888776532 223 33555565
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVE 220 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 220 (636)
.......-..+++.+.+.|+... ..-+.|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|.-
T Consensus 409 daq~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~ 484 (933)
T KOG2114|consen 409 DAQRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAEL 484 (933)
T ss_pred CHHHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHH
Confidence 66666666777888888886533 344679999999999999988887766 3311 1123445566666666677666
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 006672 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG 260 (636)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 260 (636)
+-..... +......+ +-..+++++|.+.+..++-+.
T Consensus 485 LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~~e 520 (933)
T KOG2114|consen 485 LATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPISE 520 (933)
T ss_pred HHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCHHH
Confidence 6544433 33333333 345688999999999887543
No 242
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.33 E-value=0.34 Score=45.28 Aligned_cols=100 Identities=18% Similarity=0.161 Sum_probs=75.9
Q ss_pred HHHHHhhcc--CCChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc------------
Q 006672 350 ASLVFGETK--EKDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS------------ 410 (636)
Q Consensus 350 A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 410 (636)
.++.|..+. ++|-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|+.|+..+-+.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345566665 46777788887777654 55666667788888889988888998888776442
Q ss_pred ----CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 411 ----GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 411 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
.+-+-++.++++|. .+|+.||-++-..++.+++|.|-.-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 23355788999998 6999999999999999999988653
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.30 E-value=2.3 Score=41.53 Aligned_cols=125 Identities=11% Similarity=0.037 Sum_probs=58.6
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccC-------C--ChhcHHHHHHHHHHcCChHHHHHHHHHHhH----cCCCCCHHHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKE-------K--DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPDGTVFLA 402 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~~~ 402 (636)
++..++...+.++.+.+.|+.... + ....+-+|.+.|.+..++++|+-+..+..+ .++.--..-|..
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 344445555555555555554432 1 123555666666666666666655554433 111111122322
Q ss_pred HH-----HHHHhcCcHHHHHHHHHHhHhh---cCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 403 IL-----TACWYSGQVKLALNFFDSMRFD---YFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 403 ll-----~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
++ -++...|....|.+.-++..+- .|-+|. .....++.|.|...|+.+.|..-|+++.
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 21 2344455555555555544321 122221 2333455566666666666666555444
No 244
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.27 E-value=12 Score=42.55 Aligned_cols=161 Identities=14% Similarity=0.147 Sum_probs=92.4
Q ss_pred CChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006672 178 GKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP 257 (636)
Q Consensus 178 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (636)
+++++|+.-+.++- ...|.-.++.--+.|.+.+|+.++.-=.+.-...|.+..+-+.....+++|.-.|+..-
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 45566665555443 22344444444556666777666643322233345555555556666677666666543
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHH
Q 006672 258 EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT--VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGT 335 (636)
Q Consensus 258 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (636)
+. .--+.+|...|+|.+|+.+-.+|... -|... -..|.+-+...++.-+|-++..+.... | .
T Consensus 967 kl-----ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~ 1030 (1265)
T KOG1920|consen 967 KL-----EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----E 1030 (1265)
T ss_pred cH-----HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----H
Confidence 31 22356777888899988887776531 12222 245666677777777777766655422 1 2
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccCCC
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKEKD 361 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~~ 361 (636)
-.+..|++...+++|.++-......|
T Consensus 1031 ~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1031 EAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHhhHhHHHHHHHHHHhcccch
Confidence 34556777778888887766655433
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.91 Score=43.64 Aligned_cols=118 Identities=12% Similarity=-0.051 Sum_probs=81.7
Q ss_pred hCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChH
Q 006672 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDA----FVRVHLADMYVQLGKTR 181 (636)
Q Consensus 106 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~ 181 (636)
.+|+..+|-..++++++. .+.|...+...=.+|...|+...-+..+++++.. ..+|. ++...+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467777877788887764 4446677777777888888888888877777654 12333 33333444455788888
Q ss_pred HHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 182 GAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP 226 (636)
Q Consensus 182 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 226 (636)
+|++.-++..+.+ +-|..+-.+....+-.+|+..++.++..+-.
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 8888888887766 6677777777777777888888777765443
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.21 E-value=2.6 Score=43.82 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (636)
-.+.++.-+-+.|..+.|+++.. |+ ..-.+...++|+++.|.++.++.. +...|..|.....+.|+++-|
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~-----D~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lA 366 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT-----DP---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELA 366 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC-----Ch---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHH
Confidence 35566666666677777766632 22 233344566777777777765554 455777777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 281 LAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 281 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
.+.|++..+ +..++-.|...|+.+.-.++.......| . ++....++.-.|+.++..+++.
T Consensus 367 e~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 367 EECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHH
Confidence 777765432 3344445556666665555555555444 1 2233333333455555554443
No 247
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.19 E-value=0.7 Score=45.82 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=84.8
Q ss_pred HhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHH
Q 006672 337 LVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 416 (636)
-.+.|.+.|++..|...|++...- + -|...-+.++... ... .-..++..+.-+|.+.+.+.+|
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--------l-~~~~~~~~ee~~~-~~~-------~k~~~~lNlA~c~lKl~~~~~A 276 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--------L-EYRRSFDEEEQKK-AEA-------LKLACHLNLAACYLKLKEYKEA 276 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--------h-hccccCCHHHHHH-HHH-------HHHHHhhHHHHHHHhhhhHHHH
Confidence 456788999999999888775420 0 0000000011110 110 1123455555666677777777
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhH-HHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD-VARVRT 495 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~ 495 (636)
++.-+.... . -++++...---..+|...|.++.|+..|+++. +++|.|-.+-..|+.+-.+..++.+ ..++|.
T Consensus 277 i~~c~kvLe-~-~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~----k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~ 350 (397)
T KOG0543|consen 277 IESCNKVLE-L-DPNNVKALYRRGQALLALGEYDLARDDFQKAL----KLEPSNKAARAELIKLKQKIREYEEKEKKMYA 350 (397)
T ss_pred HHHHHHHHh-c-CCCchhHHHHHHHHHHhhccHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777776663 1 23445555555667777788888888777544 6788888888778777776665554 477888
Q ss_pred HHHhC
Q 006672 496 LMQRR 500 (636)
Q Consensus 496 ~m~~~ 500 (636)
.|-.+
T Consensus 351 ~mF~k 355 (397)
T KOG0543|consen 351 NMFAK 355 (397)
T ss_pred HHhhc
Confidence 88654
No 248
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=10 Score=40.99 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
+.+--+.-+...|+..+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+..+. +.-|.-.+..+
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHH
Confidence 44555666777888888888877764 37777777778888889999887777665542 44566678888
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
.+.|+.+||.+++.+. .+ +.-...+|.+.|++.+|.++-
T Consensus 755 ~~~~n~~EA~KYiprv-------~~-----l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV-------GG-----LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhcc-------CC-----hHHHHHHHHHhccHHHHHHHH
Confidence 8999999998887632 11 115677888889888887764
No 249
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.95 E-value=0.66 Score=38.68 Aligned_cols=49 Identities=6% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-cCCCCchhHHHHHhh
Q 006672 291 GVRANDFTVVSALSACAKVGALEAGVRVHNYISC-NDFGLKGAIGTALVD 339 (636)
Q Consensus 291 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~ 339 (636)
...|+..++.+++.+++..+++..|.++.+.+.+ .+++.+..+|..|+.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3556666666666666666666666666666554 345555555555554
No 250
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.83 E-value=10 Score=39.92 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
..+|...+.--...|+.+.+.-+++...-. +..-...|-..+.-....|+.+-|..++....+ +....-..+-.++
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345555566566667777776666665421 122233444444444444777766666655443 2222222222222
Q ss_pred H-HcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHH---HHHHHhHhhcCCCCC--hhHHHHHHH-HHH
Q 006672 373 A-IHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLAL---NFFDSMRFDYFIEPS--VKHHTVVVN-LLS 444 (636)
Q Consensus 373 ~-~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~---~~~~~m~~~~~~~p~--~~~~~~l~~-~~~ 444 (636)
. ..|++..|..+++..... . |+.. .-..-+....+.|..+.+. +++..... ....+. ...+.-.+. .+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e-~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE-Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh-C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHH
Confidence 2 356777777777777664 3 5532 2222233344566666666 33332221 111111 111111111 122
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
-.++.+.|..++.++ .+..|++...|..+++.....+
T Consensus 453 i~~d~~~a~~~l~~~----~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEA----NDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHh----hhcCCccHHHHHHHHHHHHhCC
Confidence 245666666666544 3567778788888877766655
No 251
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.69 E-value=0.93 Score=42.63 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
.|+.-+. +...|++..|..-|...++.+.-.+ .+..+--|+..+...|++++|...|..+.+. .--.|+-|..+.-|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHH
Confidence 4666554 4577889999999999986442111 2444555899999999999999999987754 34456677889999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCC
Q 006672 478 SNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 478 ~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.+..+.|+.++|..++++..++=
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC
Confidence 999999999999999999998753
No 252
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.62 E-value=7.4 Score=40.50 Aligned_cols=129 Identities=19% Similarity=0.251 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 006672 167 RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246 (636)
Q Consensus 167 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 246 (636)
.+.++..+-+.|..+.|+.+-. |.. .-.....+.|+.+.|.++.++.. +...|..|.+...+.|++
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~ 363 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNI 363 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBH
T ss_pred HHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCH
Confidence 4555555556666666655522 221 12233445566666666555443 445666666666666666
Q ss_pred HHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Q 006672 247 KKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (636)
Q Consensus 247 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 320 (636)
+-|++.|.+..+ |..|+-.|.-.|+.+.-.++.+.....|- ++....++.-.|+.++..+++.
T Consensus 364 ~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 364 ELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 666666666543 44555556666766666555555555441 3334444445566655554443
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.54 E-value=1.1 Score=43.23 Aligned_cols=161 Identities=12% Similarity=0.031 Sum_probs=100.2
Q ss_pred hcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHH--HH--HHHhcCcHHH
Q 006672 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI--LT--ACWYSGQVKL 415 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--l~--a~~~~g~~~~ 415 (636)
..|+..+|-..++++.+ .|..+|+---.+|...|+.+.-...+++.... ..||...|..+ +- ++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 35666777767777664 46777777777888888888777777777653 34554333222 22 3346788888
Q ss_pred HHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 416 ALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
|++.-++..+ +.| |.-.-.++...+...|+++++.++..+-.+.--.-.-.-...|-..+-.+...+.++.|+++|
T Consensus 194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 8887776653 333 344455677778888888888888764322211100111234555566677778888888888
Q ss_pred HHHHhCCCccCCe
Q 006672 495 TLMQRRSIKKDPG 507 (636)
Q Consensus 495 ~~m~~~g~~~~~~ 507 (636)
+.-.-..+.++.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7665555666554
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.50 E-value=4.3 Score=34.60 Aligned_cols=39 Identities=10% Similarity=0.111 Sum_probs=16.8
Q ss_pred HHHHHhhcCCChHHHHHHhccCCC---CCcchHHHHHHHHHh
Q 006672 68 QLISSASLHKSIDYALSIFDHFTP---KNLHIFNVLIRGLAE 106 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 106 (636)
.+|..+.+.+........++.+.. .+....|.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 344444444444444444443321 223344444444444
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.45 E-value=0.37 Score=45.08 Aligned_cols=116 Identities=11% Similarity=0.100 Sum_probs=76.5
Q ss_pred HHHHHhccCC--CCCcchHHHHHHHHHh-----CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHH
Q 006672 81 YALSIFDHFT--PKNLHIFNVLIRGLAE-----NSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153 (636)
Q Consensus 81 ~A~~~f~~~~--~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 153 (636)
.....|...+ .+|-.+|-+++..+.. .+..+--...++.|.+.|+.-|..+|+.||..+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk---------- 121 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK---------- 121 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------
Confidence 3455676666 5677788888777654 3556666667788888888888888888887764322
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCCh
Q 006672 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (636)
Q Consensus 154 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 215 (636)
+.|... +....-.|= .+-+-+.+++++|...|+.||-.+-..+++++.+.+..
T Consensus 122 ------fiP~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 122 ------FIPQNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred ------cccHHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 111111121 23345778888888888888888888888888887764
No 256
>PRK15331 chaperone protein SicA; Provisional
Probab=93.31 E-value=0.88 Score=39.43 Aligned_cols=87 Identities=9% Similarity=-0.094 Sum_probs=41.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
.-+.+.|++++|..+|+-+.-.+ .-+..-+..|..++-..+++++|...|......+ ..|+...-.....|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33455666666666666555432 1222233344444445555666666555544332 122333333444444445555
Q ss_pred HHHHHHhhc
Q 006672 349 AASLVFGET 357 (636)
Q Consensus 349 ~A~~~~~~~ 357 (636)
.|...|...
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 554444443
No 257
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.21 E-value=0.17 Score=31.38 Aligned_cols=26 Identities=15% Similarity=0.235 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
+|..|+.+|.+.|+|++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788889999999999999888854
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.81 E-value=3.6 Score=43.37 Aligned_cols=119 Identities=12% Similarity=0.011 Sum_probs=72.6
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHHHHHHHH-HHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchH
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAIL-TACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~ 451 (636)
....+.|.++++.+.+ .-|+...|...- +.+...|++++|.+.|+.......--|. ...+--++..+.-.+++++
T Consensus 246 ~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 3456778888888877 667766665443 3556678888888888865421111121 2234445666777888888
Q ss_pred HHHHHHHHHHHHhccCCCCchhHH-HHHHHHHHcCCh-------hHHHHHHHHHHh
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYV-LLSNIYAAEGRW-------KDVARVRTLMQR 499 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~m~~ 499 (636)
|.+.+.+..+ .+.-+...|. ..+-+|...|+. ++|.+++++...
T Consensus 324 A~~~f~~L~~----~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLK----ESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHh----ccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 8888875543 2333333433 344456667777 777777776544
No 259
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.77 E-value=3.6 Score=37.22 Aligned_cols=163 Identities=16% Similarity=0.146 Sum_probs=86.9
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-cHHHHHH--HHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-TWTAMIW--GLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAI 403 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~l 403 (636)
|.-+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=. ++.-.|+++-|.+=|.+.-+.. -.|-...|..+
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl 175 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYL 175 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHH
Confidence 334677888888888888888888888888774432 2222222 2334578888877666665532 12222344333
Q ss_pred HHHHHhcCcHHHHHHHH-HHhHhhcCCCCChhHHHH-HHHHHHhcCCchHHHHHHHHHHHHH---hccCCCCchhHHHHH
Q 006672 404 LTACWYSGQVKLALNFF-DSMRFDYFIEPSVKHHTV-VVNLLSRVGQDSQGYQNSQNSFTKL---LQLKPKHPSSYVLLS 478 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~-~~m~~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~---~~l~p~~~~~~~~l~ 478 (636)
.. ..-++.+|..-+ ++.. ..+.+-|.. ++..|. |++.+ ..+++++..-. -.+...-..+|.-|+
T Consensus 176 ~E---~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yL--gkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 176 NE---QKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYL--GKISE-ETLMERLKADATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HH---hhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHH--hhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence 32 233555555433 3332 133333332 222222 22211 11222111100 000001235788899
Q ss_pred HHHHHcCChhHHHHHHHHHHhCC
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.-|...|+.++|..+|+.....+
T Consensus 245 K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHhccccHHHHHHHHHHHHHHh
Confidence 99999999999999999887644
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.74 E-value=7 Score=41.24 Aligned_cols=12 Identities=8% Similarity=0.160 Sum_probs=7.2
Q ss_pred CCChHHHHHHhc
Q 006672 76 HKSIDYALSIFD 87 (636)
Q Consensus 76 ~g~~~~A~~~f~ 87 (636)
.+++++|..+|+
T Consensus 9 nn~~~eAe~~l~ 20 (468)
T PF10300_consen 9 NNRFKEAEELLS 20 (468)
T ss_pred CCCHHHHHHHHH
Confidence 355666666665
No 261
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.63 E-value=19 Score=39.59 Aligned_cols=175 Identities=11% Similarity=0.065 Sum_probs=98.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 310 (636)
-.-++++.+...++.|..+-+.-..+.. .....-.+-+.+.|++++|...|-+-... +.|.. ++.-+.+..
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~-----Vi~kfLdaq 411 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE-----VIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH-----HHHHhcCHH
Confidence 3445555666666666666554332211 12222334456778888888777665543 23322 344444445
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChh-cHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLL-TWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
....-..+++.+.+.|+ .+...-+.|+.+|.|.++.+.-.+..+...+.... -....+..+.+.+-.++|..+-.+..
T Consensus 412 ~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 55555566666777774 34455567888888888888777777666521111 13344555555666666665544432
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 390 YSGTEPDGTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 390 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
. .......+ +-..+++++|.++++.+
T Consensus 491 ~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred c-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 2 22333333 33567888888887755
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.44 E-value=15 Score=37.96 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+..+.-+.|+.++|++.|++|.+....-| ......|+.++...+.+.++..++.+.-
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3455566677888888888888876422112 2366677888888888888888887764
No 263
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=92.33 E-value=17 Score=38.36 Aligned_cols=184 Identities=10% Similarity=0.023 Sum_probs=94.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCch--hHHHHHh
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG--AIGTALV 338 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 338 (636)
..+|+.-+.--...|+.+.+.-+|++..-. +..=...|-..+.-....|+.+.+..++....+...+..+ .+..+.+
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 457777777777788888887777776531 1111122222333333337777777666665554333222 2222222
Q ss_pred hHHhhcCCHHHHHHHHhhccC--CChh-cHHHHHHHHHHcCChHHHH---HHHHHHhHcCCCCCH--HHHHHHHH-HHHh
Q 006672 339 DMYAKCGNIEAASLVFGETKE--KDLL-TWTAMIWGLAIHGRYEQAI---QYFKKMMYSGTEPDG--TVFLAILT-ACWY 409 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~~--~t~~~ll~-a~~~ 409 (636)
.-..|+++.|..+++.+.+ |+.+ .-..-+....+.|+.+.+- +++.........+.. ..+..... .+.-
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i 453 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI 453 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence 2235678888887777765 3322 1111222334556666555 233222221111111 11111111 2333
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
.++.+.|..++..+.. -++++...|..+++...-.+..
T Consensus 454 ~~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 454 REDADLARIILLEAND--ILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred hcCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCCcc
Confidence 5677888888888764 3566677777777766655533
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.21 E-value=8.9 Score=43.63 Aligned_cols=21 Identities=5% Similarity=0.105 Sum_probs=13.4
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~ 289 (636)
-+-..+.++.+=+-+++++.+
T Consensus 859 VAq~SqkDPkEyLP~L~el~~ 879 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKK 879 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhh
Confidence 344456677777777777663
No 265
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.07 E-value=0.33 Score=29.38 Aligned_cols=22 Identities=5% Similarity=0.018 Sum_probs=9.6
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
|..+...|.+.|++++|.+.++
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~ 25 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFE 25 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 3344444444444444444444
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.96 E-value=6.3 Score=32.67 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
.+....-++.+..+|+-+.-.+++.... +-+..+|....-++++|.+.|...++.++++++-++|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~----kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELK----KNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH---------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHh----hccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4455566677788888777666665433 233447889999999999999999999999999999975
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.92 E-value=0.26 Score=29.95 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCCchHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
.|..++.+|...|++++|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~ 25 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQ 25 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHH
Confidence 34444445555555555555444
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.77 E-value=0.81 Score=43.70 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.++..++..+...|+++.+.+.++ ++++++|-+...|..++.+|.+.|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~----~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLE----RLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHH----HHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 456678888889999998888777 55688999999999999999999999999999998876
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.77 E-value=11 Score=35.24 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=89.3
Q ss_pred hhcCCHHHHHHHHhhccCCC------hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHh-----
Q 006672 342 AKCGNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY----- 409 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~----- 409 (636)
.+.|++++|.+.|+.+.... ..+--.++.++.+.+++++|+...++....- -.|| .-|...|.+.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFFQID 123 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhccCC
Confidence 34566777777776666421 1233345556667777777777777776621 2222 233333333322
Q ss_pred --cCcH---HHHHHHHHHhHhhcC---CCCChh------------HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 410 --SGQV---KLALNFFDSMRFDYF---IEPSVK------------HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 410 --~g~~---~~a~~~~~~m~~~~~---~~p~~~------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
..+. .+|..-|+..++++. ..||+. +=..+...|.+.|.+..|..-++++.+. ..-.+.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~ 202 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSA 202 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccc
Confidence 1222 334444444443321 122221 1134556788899998888888877765 333333
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
-...+..|..+|...|-.++|.+.-+-+..
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445667778889999999999888766654
No 270
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=91.77 E-value=0.26 Score=32.26 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHH
Q 006672 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205 (636)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 205 (636)
++..+...|.+.|++++|.++|++..+.. +.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 34455566666666666666666665544 4444444443
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.54 E-value=12 Score=35.08 Aligned_cols=51 Identities=20% Similarity=0.206 Sum_probs=24.6
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-H---HHHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-G---TVFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---~t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
.-|.+.|.+..|..-+++|++. -|+ . ..+-.+..+|...|..++|.+.-.-
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~v 229 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKV 229 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 3455556666666666666553 222 1 1233334455555555555544433
No 272
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.19 E-value=15 Score=35.31 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=78.3
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC-hhcHHH---HHHHHHHcCChHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTA---MIWGLAIHGRYEQA 381 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~---li~~~~~~g~~~~A 381 (636)
....|++.++..+++...... +-+......|+..|...|+.+.|..++..++... ..-|.. -|..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 455677788888887777654 3445666778888888888888888888877521 111221 22333333333333
Q ss_pred HHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhH-hhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 382 IQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR-FDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 382 ~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~-~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
..+-++.- -.| |...-..+...+...|+.++|.+.+-.+. ++.+. -+...-..+++.+.-.|..+.
T Consensus 223 ~~l~~~~a---adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~-~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 223 QDLQRRLA---ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF-EDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-cCcHHHHHHHHHHHhcCCCCH
Confidence 33333332 234 34455556666777777777776544443 32332 233344555555554444433
No 273
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=91.13 E-value=12 Score=34.26 Aligned_cols=186 Identities=15% Similarity=0.149 Sum_probs=132.9
Q ss_pred CCcHHHHHHHHHHHHcCCC-CchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHH
Q 006672 310 GALEAGVRVHNYISCNDFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
+....+...+......... ............+...+.+..+...+..... .....+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444455544443322 1356777788888899999999888877642 445567777788888899999999
Q ss_pred HHHHHhHcCCCCCHHHHHHHHH-HHHhcCcHHHHHHHHHHhHhhcCC--CCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPDGTVFLAILT-ACWYSGQVKLALNFFDSMRFDYFI--EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 384 ~~~~m~~~g~~p~~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+.........+. ........ ++...|+++.+...+..... ... ......+......+...++.++|...+.++.
T Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 117 LLEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999988433332 22222233 78899999999999999853 221 1234455555556778899999999998655
Q ss_pred HHHhccCCC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 461 TKLLQLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 461 ~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+..|. ....+..+...+...+++++|...+.......
T Consensus 195 ----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 195 ----KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred ----hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 45666 57889999999999999999999999988744
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.88 E-value=19 Score=36.20 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=34.1
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccCC-------ChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEK-------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
...++..++..+.+.|+++.|...+..+... ++...-.-+..+-..|+..+|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666666666655541 222333334445556666666666666555
No 275
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.79 E-value=9.8 Score=35.27 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhh
Q 006672 166 VRVHLADMYVQLGKTRGAFKVFDE 189 (636)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~~~~ 189 (636)
.++--..+|..+|..+.|-..+++
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleK 116 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEK 116 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHH
Confidence 445555667777776666555544
No 276
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=90.66 E-value=8.8 Score=31.88 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=31.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
..+.+....|.-|.-.+++..+.+ +-+++++..-.+..+|.+.|...+|.+++.++.+++
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344455556666666666655542 334556666666666666666666666666665554
No 277
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.59 E-value=3.8 Score=34.72 Aligned_cols=68 Identities=16% Similarity=0.224 Sum_probs=41.5
Q ss_pred HhhcCCHHHHHHHHhhccCC------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhc
Q 006672 341 YAKCGNIEAASLVFGETKEK------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYS 410 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~ 410 (636)
..+.|++++|.+.|+.+..+ ...+--.++.+|.+.|++++|+..+++.++ +.|++ +-|...+.+++.-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHHH
Confidence 34556666666666666542 122444567777788888888888888877 44543 3455555554443
No 278
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.53 E-value=32 Score=38.20 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=71.4
Q ss_pred hcCCHHHHHHHHhhccC--------CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH---HHHHHH--HHHHh
Q 006672 343 KCGNIEAASLVFGETKE--------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAIL--TACWY 409 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll--~a~~~ 409 (636)
..|+++.|.++-+.... ..++.+..+..+..-.|++++|..+.++..+..-.-+.. .|..+. ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 35666666555544332 245556666666666777777777666655431111211 222222 22344
Q ss_pred cCc--HHHHHHHHHHhHhhcCC-C----CChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc---hhHHHHHH
Q 006672 410 SGQ--VKLALNFFDSMRFDYFI-E----PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP---SSYVLLSN 479 (636)
Q Consensus 410 ~g~--~~~a~~~~~~m~~~~~~-~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~---~~~~~l~~ 479 (636)
.|. ..+....|......... . +-...+..+..++.| ++.+..-.....+.+..-.|... ..+..|+.
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~ 626 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAE 626 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHH
Confidence 552 22223333333221111 1 112233333333333 33333333322222222222211 12235677
Q ss_pred HHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 480 IYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 480 ~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
++...|+.++|.....++.......
T Consensus 627 l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 627 LEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 7777777777777777776654443
No 279
>PRK09687 putative lyase; Provisional
Probab=90.43 E-value=18 Score=35.12 Aligned_cols=198 Identities=13% Similarity=0.044 Sum_probs=88.0
Q ss_pred ChhhHHHHHHHHHhcCCh----HHHHHHHhhC--CCCChHHHHHHHHHHHhcCCH-----HHHHHHHhh-CCCCChhhHH
Q 006672 198 SVLLWNVLINGCSKIGYL----RKAVELFGMM--PKKNVASWVSLIDGFMRKGDL-----KKAGELFEQ-MPEKGVVSWT 265 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~----~~A~~~~~~m--~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~-~~~~~~~~~~ 265 (636)
|...-...+.++.+.|+. +++...+..+ ..++..+....+.+++..+.- ..+...+.. +.+++..+-.
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~ 146 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRF 146 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHH
Confidence 444444444555555542 3455555544 345555555555555544321 122222222 2233333333
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
..+.++.+.++ ++|+..+-.+.+. +|...-...+.++...+ ..+.+...+..+. ..++..+-...+.++++.
T Consensus 147 ~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 147 AVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHcc
Confidence 44555555554 4455555555542 33333333444444332 1233333333333 134555555566666666
Q ss_pred CCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Q 006672 345 GNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (636)
Q Consensus 345 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 407 (636)
|+......+.+.+..++ ..-..+.++...|.. +|+..+.++.+ -.||...-...+.+|
T Consensus 220 ~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 220 KDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred CChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 65433333333333333 223455556666653 56666666655 233444444444443
No 280
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.35 E-value=2.2 Score=38.04 Aligned_cols=89 Identities=8% Similarity=0.077 Sum_probs=60.6
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
+...|++++|..-|.....- .++. ...|..-..++.+.+.++.|++-.. +.++++|....+...-+.+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcs----Kaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCS----KAIELNPTYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHH----hhHhcCchhHHHHHHHHHHH
Confidence 44566777777766666541 1221 2345555667777788877776544 55678887767777777788
Q ss_pred HHcCChhHHHHHHHHHHhCC
Q 006672 482 AAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 482 ~~~g~~~~A~~~~~~m~~~g 501 (636)
.+..++++|++-++++.+..
T Consensus 179 ek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhC
Confidence 88888999999888888744
No 281
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.24 E-value=0.5 Score=40.64 Aligned_cols=129 Identities=13% Similarity=0.152 Sum_probs=78.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCC
Q 006672 135 VSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGY 214 (636)
Q Consensus 135 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 214 (636)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 4566666777778888888888777667788899999999999888888888874331 333556677777777
Q ss_pred hHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 006672 215 LRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (636)
Q Consensus 215 ~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (636)
+++|.-++.++...+..+ ..+.+.++++.|.+.+.+. .+...|..++..|...+..
T Consensus 86 ~~~a~~Ly~~~~~~~~al-----~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHDEAL-----EILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHTTCS-----STSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHHHHH-----HHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 777776655443111000 0011222233333222222 2357888888888776653
No 282
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.19 E-value=1.8 Score=41.86 Aligned_cols=92 Identities=18% Similarity=0.183 Sum_probs=54.3
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
+-|.++|.+++|+..|.+... +.| |++++..-..||.+...+..|..-...... . -...+.+|.|.|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHHH
Confidence 457778888888888877766 566 677777777778777777666655554432 1 1233445554443
Q ss_pred chHHHHHHHHH---HHHHhccCCCCch
Q 006672 449 DSQGYQNSQNS---FTKLLQLKPKHPS 472 (636)
Q Consensus 449 ~~~A~~~~~~~---~~~~~~l~p~~~~ 472 (636)
-.+++..+.++ .+..++++|++..
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCcccHH
Confidence 33333333322 2345677887543
No 283
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.11 E-value=8.4 Score=37.66 Aligned_cols=82 Identities=12% Similarity=0.114 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhHcCCCCCHH-H-HHHHHHHHHhcCc--HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPDGT-V-FLAILTACWYSGQ--VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~~~-t-~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
+.+..+|+.+.+.|+..+.. - ...++..+..... +..+.++++.+.+ .|+++...+|..++-+-.-.+..++..+
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~-~~~kik~~~yp~lGlLall~~~~~~~~~ 238 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKK-NGVKIKYMHYPTLGLLALLEDPEEKIVE 238 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCccccccccHHHHHHhcCCchHHHHH
Confidence 56677888888877776633 3 3333333322222 4467778888874 6888888887766543333333324444
Q ss_pred HHHHHHH
Q 006672 455 NSQNSFT 461 (636)
Q Consensus 455 ~~~~~~~ 461 (636)
-+.++.+
T Consensus 239 ~i~ev~~ 245 (297)
T PF13170_consen 239 EIKEVID 245 (297)
T ss_pred HHHHHHH
Confidence 4444443
No 284
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=90.07 E-value=4.8 Score=31.42 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=42.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 300 (636)
..+...|++++|..+.+.+..||+..|-+|-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45667788888888888888888888876643 35666677777777777776 55555554
No 285
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.03 E-value=13 Score=34.57 Aligned_cols=63 Identities=8% Similarity=-0.013 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
+.|.....+|.|..+++||-..+.+-..-..+.+ |.--..|...+-.|.-..++..|.+.++.
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 3444555667777777777777664443333333 22223466666677777788888877653
No 286
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=34 Score=37.42 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHH
Q 006672 166 VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRK 217 (636)
Q Consensus 166 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 217 (636)
++..+|+.+.-.|++++|-...-.|. .-+..-|..-+..+...++...
T Consensus 394 v~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 394 VGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccccccch
Confidence 45555666666666666666655555 3444555555555555544433
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.59 E-value=0.79 Score=28.35 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQML 288 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~ 288 (636)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677777788888888888777744
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.50 E-value=0.7 Score=27.98 Aligned_cols=31 Identities=23% Similarity=0.518 Sum_probs=20.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
+|..+...|...|++++|+..|++.++ +.|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 566677777777777777777777766 4443
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=37 Score=37.13 Aligned_cols=170 Identities=17% Similarity=0.200 Sum_probs=101.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSE---SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~ 247 (636)
++.+.+.+.+++|++.-+..... .| -...+...|..+.-.|++++|-...-.|...+..-|---+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 56677888899999888766543 33 34567788888888999999988888888888888877777777777665
Q ss_pred HHHHHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 248 KAGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 248 ~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
....+.-.-+. .+...|..++..|.. .+.. -|.+.... -+++...-..++++- ..++.+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~----~F~e~i~~-Wp~~Lys~l~iisa~------------~~q~~q~- 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVK----GFLELIKE-WPGHLYSVLTIISAT------------EPQIKQN- 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HHHH----HHHHHHHh-CChhhhhhhHHHhhc------------chHHHhh-
Confidence 54333222111 234567777766665 2222 22222221 122222222222211 1111111
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL 362 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 362 (636)
.-+..+...|+..|...++++.|...+-....+++
T Consensus 502 -Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 502 -SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred -ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 11222334488889999999999988888776544
No 290
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.34 E-value=0.84 Score=29.06 Aligned_cols=28 Identities=7% Similarity=0.069 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
+++.|...|...|++++|.++++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555556666666666666666555443
No 291
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.14 E-value=15 Score=32.28 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=24.3
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006672 236 LIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (636)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 287 (636)
++..+...|++-+|.++.+.....+...-..++.+..+.++...=..+|+-.
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455555555555555543333333344455555555544433444333
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=89.07 E-value=0.8 Score=27.59 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
..|..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998773
No 293
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.05 E-value=15 Score=32.24 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISC 324 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (636)
+..++..+...|++-+|+++.+...... . .....++.+..+.++...-..++....+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~~-~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKVD-S---VPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc-c---CCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456677888888888888877653221 1 1224466777677766655555555444
No 294
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=88.75 E-value=8.4 Score=34.99 Aligned_cols=176 Identities=16% Similarity=0.055 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 146 SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (636)
Q Consensus 146 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (636)
..|+-=|.+.+... +.-+.++|-|.--+...|+++.|.+.|+...+.. +....+.-.-.-++.-.|++.-|.+-|-+.
T Consensus 82 ~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD-p~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 82 ALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccC-CcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 33444444444332 2235677777777778888888888888877554 222222211122233457777776655544
Q ss_pred CCCChH-HHHHH-HHHHHhcCCHHHHHH-HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-------
Q 006672 226 PKKNVA-SWVSL-IDGFMRKGDLKKAGE-LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN------- 295 (636)
Q Consensus 226 ~~~~~~-~~~~l-i~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------- 295 (636)
-+.|+. .|.+| +..--..-+..+|.. +.++....|-.-|..-|..|.-..-.++ .+|+++.... .-+
T Consensus 160 YQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e--~l~~~~~a~a-~~n~~~Ae~L 236 (297)
T COG4785 160 YQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEE--TLMERLKADA-TDNTSLAEHL 236 (297)
T ss_pred HhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHH--HHHHHHHhhc-cchHHHHHHH
Confidence 422221 11111 111112234444433 3334444444444444433332222222 1233333211 111
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
..||--+..-+...|+.++|..+|+..+...
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2466677777777788888877777776554
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.71 E-value=2.6 Score=40.32 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH-----cCCCCCHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-----SGTEPDGTVFLA 402 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~ 402 (636)
..++..++..+..+|+.+.+...+++..+ -+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44566777888888888888888877765 3556788888888888888888888887765 456665555444
Q ss_pred HHH
Q 006672 403 ILT 405 (636)
Q Consensus 403 ll~ 405 (636)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.69 E-value=7.4 Score=34.79 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH-
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV- 475 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~- 475 (636)
.+..+..-|.+.|+.+.|.+.|.++.. +...|. ...+-.++....-.|++..+...+.++....-+..+.+...-.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~-~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARD-YCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhh-hcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344444555555555555555555442 333332 3344445555555555555555555443322221111111111
Q ss_pred -HHHHHHHHcCChhHHHHHHH
Q 006672 476 -LLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 476 -~l~~~~~~~g~~~~A~~~~~ 495 (636)
.-+-.+...|++.+|.+.|-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHH
Confidence 11222344677777777764
No 297
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=88.20 E-value=32 Score=35.00 Aligned_cols=400 Identities=14% Similarity=0.110 Sum_probs=221.3
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCc---chHHHHHHHHHhCCCchHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNL---HIFNVLIRGLAENSHFQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m 120 (636)
+..-.++-+++... +.|...|-+||.-|...|..+.-++++++|..|-+ ..|..-+++=....++.....+|.+.
T Consensus 25 ~~D~lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rC 102 (660)
T COG5107 25 HGDELRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRC 102 (660)
T ss_pred CchHHHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 33344566665544 55888999999999999999999999999997754 47988888888888999999999998
Q ss_pred HHCCCCCCcccHHHHHHHHHccCChHH------HHHHHHHHHH-hCCCCCh-hHHHHHHHHHH---------hcCChHHH
Q 006672 121 LRLSVRPNRLTYPFVSKSVASLSLLSL------GRGLHCLIVK-SGVEYDA-FVRVHLADMYV---------QLGKTRGA 183 (636)
Q Consensus 121 ~~~g~~p~~~t~~~ll~~~~~~~~~~~------a~~~~~~~~~-~g~~~~~-~~~~~li~~~~---------~~g~~~~A 183 (636)
+...+ +...|..-|....+.+..-. ..+.++..+. .+++|-. ..|+..+...- .+.++|..
T Consensus 103 L~k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 103 LKKSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred Hhhhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 87543 45556666655544443222 2234444443 2344432 23444443321 23345666
Q ss_pred HHHHhhCCCCCCCCChhhHHHH------HHHHHh---cC----ChHHHHHHHhhCCC----------CChHH--------
Q 006672 184 FKVFDETPEKNKSESVLLWNVL------INGCSK---IG----YLRKAVELFGMMPK----------KNVAS-------- 232 (636)
Q Consensus 184 ~~~~~~m~~~~~~~~~~~~~~l------i~~~~~---~g----~~~~A~~~~~~m~~----------~~~~~-------- 232 (636)
++.+.++..-.+..=...|+.. +.-... .| -+..|.+.+++... .+..+
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s 260 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTS 260 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccc
Confidence 6777776642211111222211 111100 01 13334444444330 01111
Q ss_pred ---HHHHHHHHHhcC-----C-H-HHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006672 233 ---WVSLIDGFMRKG-----D-L-KKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 233 ---~~~li~~~~~~g-----~-~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 299 (636)
|-..|.--...| + . ....-+|++... -....|----.-+...++-+.|+....+-... .|. +
T Consensus 261 ~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L 335 (660)
T COG5107 261 DSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---L 335 (660)
T ss_pred cchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---h
Confidence 111111111100 0 0 000001111100 00122333333344556666666554433221 222 1
Q ss_pred HHHHHHHHhc----------------------------------CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC
Q 006672 300 VSALSACAKV----------------------------------GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (636)
Q Consensus 300 ~~ll~~~~~~----------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (636)
...++-|-.. |+++.-.+++- ++ ...-..+|..++..-.+..
T Consensus 336 ~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~---kr-~~k~t~v~C~~~N~v~r~~ 411 (660)
T COG5107 336 TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLL---KR-INKLTFVFCVHLNYVLRKR 411 (660)
T ss_pred heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHH---HH-HhhhhhHHHHHHHHHHHHh
Confidence 1111111111 11111111110 00 0122456777888888888
Q ss_pred CHHHHHHHHhhccC-----CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHH-HHHHHHHHHhcCcHHHHHHH
Q 006672 346 NIEAASLVFGETKE-----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTV-FLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 346 ~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a~~~ 419 (636)
.++.|+.+|-+..+ +++..+++++.-++ .|+..-|..+|+--.. ..||... ..-.+.-+...++-+.|..+
T Consensus 412 Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl~fLi~inde~naraL 488 (660)
T COG5107 412 GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYLLFLIRINDEENARAL 488 (660)
T ss_pred hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCcHHHHHHH
Confidence 89999999988765 57888999998776 5778889999987665 4566543 34456666788999999999
Q ss_pred HHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 420 FDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 420 ~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
|+..+. .+..+ ...|..+++-=..-|++..+..+-+++.+
T Consensus 489 Fetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 489 FETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 997664 23333 57899999988899999988888776653
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.06 E-value=7.5 Score=33.66 Aligned_cols=108 Identities=11% Similarity=-0.082 Sum_probs=60.3
Q ss_pred hhcCCChHHHHHHhccCC--CCCcch-HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHH
Q 006672 73 ASLHKSIDYALSIFDHFT--PKNLHI-FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGR 149 (636)
Q Consensus 73 ~~~~g~~~~A~~~f~~~~--~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 149 (636)
-.+.++.+++..+++-+. +|.... -..-...+...|++.+|+++|+++.+.+ |..-.-..|+..|.....-..=+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHH
Confidence 345678888988888654 443322 2222334678899999999999987643 33333334444444443333333
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHH
Q 006672 150 GLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFK 185 (636)
Q Consensus 150 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 185 (636)
..-..+.+.+..|+. ..|+..+....+...|..
T Consensus 98 ~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADPDA---RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence 444445555444433 235555555555555444
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.96 E-value=14 Score=32.28 Aligned_cols=49 Identities=18% Similarity=0.309 Sum_probs=24.4
Q ss_pred hcCCHHHHHHHHhhCCCCChhhHHHH-----HHHHHhCCChHHHHHHHHHHHHC
Q 006672 242 RKGDLKKAGELFEQMPEKGVVSWTAM-----INGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
+.+..++|+.-|..+.+.+.-.|-.| .....+.|+...|...|.+.-..
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 34445555555555554443222222 23345556666666666665543
No 300
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=2.2 Score=40.81 Aligned_cols=102 Identities=18% Similarity=0.141 Sum_probs=73.1
Q ss_pred hCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC-CCCc-----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc
Q 006672 57 HNLFASSRITTQLISSASLHKSIDYALSIFDHFT-PKNL-----HIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL 130 (636)
Q Consensus 57 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~-~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 130 (636)
.|.+.+..+...++..-....+++++...+-.+. .|+. .+-.+.++-+ -.-++++++.++..=.+.|+-||.+
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 4555666677777777777778888888765554 2211 1111223323 3347789999998888999999999
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhC
Q 006672 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSG 159 (636)
Q Consensus 131 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 159 (636)
|++.++..+.+.+++.+|.++...|+...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999888888777654
No 301
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.35 E-value=1.1 Score=28.53 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4788999999999999999999998866
No 302
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=87.16 E-value=35 Score=34.28 Aligned_cols=74 Identities=9% Similarity=0.095 Sum_probs=55.5
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
.....+|..++.+..+.|+++-|...+.++.......++..+.....-+......|+.++|...++......+.
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 34467788889999999999999999887654322222335667777788999999999999999888774333
No 303
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.02 E-value=53 Score=36.17 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHH-hCCCC--ChhHHHHHHHHhh-cCCChHHHHHHhccCC----CCCcc-----hHHHHHHHHHhCCCch
Q 006672 45 KQLRQIHAQIIL-HNLFA--SSRITTQLISSAS-LHKSIDYALSIFDHFT----PKNLH-----IFNVLIRGLAENSHFQ 111 (636)
Q Consensus 45 ~~a~~~~~~~~~-~g~~~--~~~~~~~li~~~~-~~g~~~~A~~~f~~~~----~~~~~-----~~~~li~~~~~~g~~~ 111 (636)
..|.+.++.+.+ ..+.| +..++-.+...|. ...+++.|+..+++.. +++.. .-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 445566666664 22333 3345666666666 4678999999887542 22211 2234455565655544
Q ss_pred HHHHHHHHhHHCCCC----CCcccHHHH-HHHHHccCChHHHHHHHHHHHHhC---CCCChhHHHHHHHHHH--hcCChH
Q 006672 112 SCISHFVFMLRLSVR----PNRLTYPFV-SKSVASLSLLSLGRGLHCLIVKSG---VEYDAFVRVHLADMYV--QLGKTR 181 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~----p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~--~~g~~~ 181 (636)
|....++..+.--. +-...|..+ +..+...++...|.+.++.+...- ..|-..++-.++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888887653211 112222222 222223378888888888776643 2344444444444443 345455
Q ss_pred HHHHHHhhCCC---------CCCCCChhhHHHHHHHH--HhcCChHHHHHHHhhCC
Q 006672 182 GAFKVFDETPE---------KNKSESVLLWNVLINGC--SKIGYLRKAVELFGMMP 226 (636)
Q Consensus 182 ~A~~~~~~m~~---------~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 226 (636)
++.+..+++.. ....|-..+|..+++.+ ...|+++.+.+.++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56555554411 11244566777776654 55777767766665554
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.99 E-value=5.1 Score=38.41 Aligned_cols=97 Identities=15% Similarity=0.196 Sum_probs=73.4
Q ss_pred cCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-C--------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 325 NDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-K--------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 325 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
.|.+....+...++..-....+++++...+-+... + ...+|-.++. .-+.++++.++..=++.|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 45566666667777777777888888888776654 2 2233333332 346779999999999999999
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
|..++..++..+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999999888777753
No 305
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.85 E-value=28 Score=32.81 Aligned_cols=203 Identities=16% Similarity=0.156 Sum_probs=119.6
Q ss_pred CCHHHHHHHHhhCCC----C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHhcCC
Q 006672 244 GDLKKAGELFEQMPE----K---GVVSWTAMINGFSQNGEAEKALAMFFQMLD---AGV--RANDFTVVSALSACAKVGA 311 (636)
Q Consensus 244 g~~~~A~~~~~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~--~p~~~t~~~ll~~~~~~~~ 311 (636)
.++++|+.-|++..+ + +..+...+|..+.+.|++++.++.|.+|.. +.+ .-+..+.++++...+...+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666665432 1 234566778888889999998888888863 111 2234566777776666666
Q ss_pred cHHHHHHHHHHHHc-----CCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--------CC-------hhcHHHHHHH
Q 006672 312 LEAGVRVHNYISCN-----DFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--------KD-------LLTWTAMIWG 371 (636)
Q Consensus 312 ~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~~ 371 (636)
.+.-..+++.-++. +-..--.+-+-|...|...|.+..-.+++.++.. .| ...|..-|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 66666665543321 1111112235566777777777777777766543 11 2367777888
Q ss_pred HHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHH-----hcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHH
Q 006672 372 LAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACW-----YSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVV 440 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~ 440 (636)
|..+.+-.+-..+|++.+.-. .-|.+. ...+++-|. +.|.+++|-.-|-+.-+.+.-.-+ ---|..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLA 279 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLA 279 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHH
Confidence 888888777788888776522 234333 344555553 567888876544433333432222 22355666
Q ss_pred HHHHhcC
Q 006672 441 NLLSRVG 447 (636)
Q Consensus 441 ~~~~~~g 447 (636)
+++.+.|
T Consensus 280 NMLmkS~ 286 (440)
T KOG1464|consen 280 NMLMKSG 286 (440)
T ss_pred HHHHHcC
Confidence 7777665
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.26 E-value=6.2 Score=35.27 Aligned_cols=61 Identities=11% Similarity=0.200 Sum_probs=39.1
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
.+..+..-|.+.|+.+.|++.|.++.+.-..|... .+..++..+...+++..+.....+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 45556666777777777777777776654444432 45566666666777777776666654
No 307
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.03 E-value=1.2 Score=26.85 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=10.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHH
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
|..++.+|...|++++|...+++.
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344444444444444444444443
No 308
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.98 E-value=29 Score=32.13 Aligned_cols=67 Identities=9% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCCCCchhH---HHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 435 HHTVVVNLLSRV-GQDSQGYQNSQNSFTKLLQLKPKHPSSY---VLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 435 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~l~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
++-.+.+.|-.- .+++.|+..|+++.+- .+.+..+..+- .-.+..-+..|++.+|+++|++.....+
T Consensus 115 ~~~~iaEiyEsdl~d~ekaI~~YE~Aae~-yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 115 HHIEIAEIYESDLQDFEKAIAHYEQAAEY-YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHHH-HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555544 6677777777766543 22232233222 2233334456888899999888766443
No 309
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.92 E-value=1.1 Score=25.27 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777788777777664
No 310
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=85.84 E-value=41 Score=36.96 Aligned_cols=71 Identities=11% Similarity=0.002 Sum_probs=43.1
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCC-------hHHHHHHHHHHHHhCCCCChh
Q 006672 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-------LSLGRGLHCLIVKSGVEYDAF 165 (636)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 165 (636)
+...| ++|-.|.+.|++++|.++..+... ........|...+..+....+ -+....-+++..+.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 44567 567788999999999999866554 345566778888888876533 223444455555443333554
No 311
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.81 E-value=32 Score=33.67 Aligned_cols=127 Identities=13% Similarity=0.149 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh--cC----cHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCc
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWY--SG----QVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~g----~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~ 449 (636)
+++.+.+++.|.+.|.+-+..+|.+....... .. ....+..+|+.|++++..--+ -..+..++. .+.+..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA--~~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLA--MTSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHh--cccccH
Confidence 34567788889999988887766654332222 22 356788999999987665333 334444432 245555
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC-----hhHHHHHHHHHHhCCCccCC
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR-----WKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~m~~~g~~~~~ 506 (636)
++-.+-.++..+.+.+..-........|+.+++-.+. ...+.++++.+.+.|++..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~ 217 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKY 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcccc
Confidence 4444444444444433222222233444444443221 34678889999999987544
No 312
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=85.67 E-value=5.1 Score=35.31 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHhcCCchHHHHHHHHHHH---HHhccCCCCchhHHHHHHHHHHcCC
Q 006672 443 LSRVGQDSQGYQNSQNSFT---KLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~---~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+++..+..++.++++++.+ ..+.++|+...++..++++|...+.
T Consensus 38 LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 38 LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3344445567777776544 4467899999999999999987664
No 313
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.49 E-value=7 Score=30.73 Aligned_cols=61 Identities=11% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
-+..+-+..+....+-|++....+.+.||.+.+++..|.++|+.++.+.+ +....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35566667777778889999999999999999999999999998886444 33336665554
No 314
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.29 E-value=25 Score=30.84 Aligned_cols=119 Identities=14% Similarity=0.180 Sum_probs=54.0
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHH-HHHhhHHhhcCCHHHHHHHHhhccCCChh--cH---HHH--HHHHHHcCChHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFGETKEKDLL--TW---TAM--IWGLAIHGRYEQ 380 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~---~~l--i~~~~~~g~~~~ 380 (636)
.+..++|..-|..+.+.|...-+..- ..........|+...|...|+++...+.. .. -.| .-.+..+|.++.
T Consensus 71 ~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~d 150 (221)
T COG4649 71 ENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDD 150 (221)
T ss_pred cCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHH
Confidence 34444555555555444432222111 11223344455555666666555431111 11 001 112345566666
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
.....+-+-..+-..-...-..|.-+-.+.|++..|.+.|..+..+.
T Consensus 151 V~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 151 VSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 66555554433222222333444445556777777777777666543
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.26 E-value=5.5 Score=33.90 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=28.7
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.++.+++..+++.+. -+.|+.+..-..-++.+...|+|++|.++++...+.+
T Consensus 23 ~~d~~D~e~lLdALr----vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALR----VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHH----HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 455555555554322 3455555555555566666666666666666655544
No 316
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.11 E-value=25 Score=30.57 Aligned_cols=19 Identities=21% Similarity=0.186 Sum_probs=9.0
Q ss_pred HhhcCCHHHHHHHHhhccC
Q 006672 341 YAKCGNIEAASLVFGETKE 359 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~ 359 (636)
+...|++.+|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555554443
No 317
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.45 E-value=41 Score=32.63 Aligned_cols=222 Identities=14% Similarity=0.007 Sum_probs=114.0
Q ss_pred hCCChHHHHHHHHHHHHCC--CCCCHH------HHHHHHHHHHhcC-CcHHHHHHHHHHHHc--------CCCCc-----
Q 006672 273 QNGEAEKALAMFFQMLDAG--VRANDF------TVVSALSACAKVG-ALEAGVRVHNYISCN--------DFGLK----- 330 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g--~~p~~~------t~~~ll~~~~~~~-~~~~a~~~~~~~~~~--------~~~~~----- 330 (636)
+.|+.+.|..++.+..... ..|+.. .|+. .......+ +++.|...+++..+. ...++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~-G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNI-GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4566666666666655421 223221 1222 22223344 777776666554332 11222
Q ss_pred hhHHHHHhhHHhhcCCHHH---HHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEA---ASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~---A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 404 (636)
..+...|+.+|...+..+. |.++++.+.. ++ +..+-.-+..+.+.++.+++.+.+.+|+..- .-....|..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 3466778888888877654 4555555543 33 4455555666666899999999999999852 21234455555
Q ss_pred HHH---HhcCcHHHHHHHHHHhHhhcCCCCChhHH--HHHH---HHHHhcCC------chHHHHHHHHHHHHH-hccCCC
Q 006672 405 TAC---WYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVV---NLLSRVGQ------DSQGYQNSQNSFTKL-LQLKPK 469 (636)
Q Consensus 405 ~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l~---~~~~~~g~------~~~A~~~~~~~~~~~-~~l~p~ 469 (636)
..+ ... ....|...+..+.. ..+.|....+ ..++ -+..+.++ .+...++++...+.. -++.++
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLL-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444 333 33456666655553 3345544312 1111 12223222 333333343222111 122222
Q ss_pred CchhHHHH----HHHHHHcCChhHHHHHHHHHH
Q 006672 470 HPSSYVLL----SNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 470 ~~~~~~~l----~~~~~~~g~~~~A~~~~~~m~ 498 (636)
...+..+| +..+.+.++|++|.++++-..
T Consensus 241 ~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 241 AASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22222233 445677899999999998544
No 318
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.98 E-value=8.6 Score=29.92 Aligned_cols=63 Identities=13% Similarity=0.123 Sum_probs=47.1
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
+.-++.+-++.+....+-|++....+.++||.+.+++..|.++|+..+.+.+ .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456666777777778889999999999999999999999999998874333 24445655543
No 319
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=83.97 E-value=2.4 Score=25.46 Aligned_cols=27 Identities=4% Similarity=0.124 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..|..+...|...|++++|.+.|+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~ 28 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKAL 28 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 468889999999999999999998654
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.62 E-value=71 Score=34.65 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=65.9
Q ss_pred HHHHHHHHhhCCCCC-hhhHHHHHH----H-HHhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC--
Q 006672 246 LKKAGELFEQMPEKG-VVSWTAMIN----G-FSQNGEAEKALAMFFQMLD-------AGVRANDFTVVSALSACAKVG-- 310 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~-~~~~~~li~----~-~~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~-- 310 (636)
...|.+.++...+.+ +..-..++. + +....+.+.|+.+|+.+.+ .|. ......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~---~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL---PPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC---CccccHHHHHHhcCCCC
Confidence 445666666555433 222222222 2 3445677777777777655 331 123334444444422
Q ss_pred ---CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh-cCCHHHHHHHHhhccCC-ChhcHHHHHHHHHH----cCChHHH
Q 006672 311 ---ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK-CGNIEAASLVFGETKEK-DLLTWTAMIWGLAI----HGRYEQA 381 (636)
Q Consensus 311 ---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A 381 (636)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|...... .+.+.-.+...|.. ..+.+.|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3455666666666555 2333332222222222 23455666666655442 22222222222221 2245566
Q ss_pred HHHHHHHhHcC
Q 006672 382 IQYFKKMMYSG 392 (636)
Q Consensus 382 ~~~~~~m~~~g 392 (636)
..++.+.-+.|
T Consensus 384 ~~~~k~aA~~g 394 (552)
T KOG1550|consen 384 FAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHcc
Confidence 66666666655
No 321
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=83.33 E-value=15 Score=32.48 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC----c-------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG----Q-------VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g----~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
+++|+.-|++.+. +.|+ ..++..+..++...+ + +++|.+.|++... ..|+.+.|..-+++..
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~---~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD---EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHH
Confidence 3556666666666 7788 457777777766543 2 3444444444442 5677777776666553
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.22 E-value=12 Score=29.38 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=14.9
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLI 206 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 206 (636)
.+...|++++|..+.+.+. .||...|.+|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~~----~pdlepw~ALc 77 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKLC----YPDLEPWLALC 77 (115)
T ss_pred HHHccchHHHHHHhcCCCC----CchHHHHHHHH
Confidence 3444555555555555444 45555554443
No 323
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=83.13 E-value=1.7 Score=26.46 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=14.0
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAAS 351 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~ 351 (636)
|.+...|+.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 445556666666666666665554
No 324
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.09 E-value=14 Score=33.19 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=59.6
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCCH-----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHH
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPDG-----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLL 443 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 443 (636)
.-+..+|++++|..-|.+.+.. ++|.. +.|..-..++.+.+.++.|+.-....++ +.|+ .....--..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHHH
Confidence 3456778888888888888773 22221 2344444566778888888877766664 4443 22223335678
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
.+...+++|++-|++ +++++|...
T Consensus 179 ek~ek~eealeDyKk----i~E~dPs~~ 202 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKK----ILESDPSRR 202 (271)
T ss_pred HhhhhHHHHHHHHHH----HHHhCcchH
Confidence 888888888888774 446677543
No 325
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.84 E-value=17 Score=38.27 Aligned_cols=125 Identities=18% Similarity=0.123 Sum_probs=70.0
Q ss_pred hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh
Q 006672 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 176 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 255 (636)
-.|+++.|..++-.++ ...-+.++.-+-+.|..++|+++- +|+.- -.....+.|+++.|.++..+
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-----~D~d~---rFelal~lgrl~iA~~la~e 662 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-----TDPDQ---RFELALKLGRLDIAFDLAVE 662 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-----CChhh---hhhhhhhcCcHHHHHHHHHh
Confidence 3466666666555444 123445556666677777776652 22211 12233466777777766544
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC
Q 006672 256 MPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 256 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
. .+..-|..|..+..+.|++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.|
T Consensus 663 ~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 663 A--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred h--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 3 3356677777777778887777777766543 3345555555555544444333333333
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.75 E-value=28 Score=29.72 Aligned_cols=64 Identities=8% Similarity=-0.029 Sum_probs=32.2
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC-hhcHHHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD-LLTWTAMIWGLA 373 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~ 373 (636)
.++.+.+..+++.+.-.. |....+-..-.-.+...|++++|.++|+++.+.. ...|..-+.+++
T Consensus 23 ~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C 87 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC 87 (153)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence 556666666666554322 1122222223334556777777777777776643 224444444433
No 327
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=81.57 E-value=71 Score=33.22 Aligned_cols=370 Identities=9% Similarity=0.064 Sum_probs=182.6
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSG-VEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
....+|+..... ..-|...|..-+..|-+.+.+.....+|..|+... ..||..++.+. .-|-...+++.|+.+|..-
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~-wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAK-WEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhh-hHHhhccchHHHHHHHHHH
Confidence 445566655432 34488889989988888888999999999998763 34454444332 2334444599999999877
Q ss_pred CCCCCCCChhhHHHHHHH---HHh------------cCCh----HHHHHHHhhC-C------------------------
Q 006672 191 PEKNKSESVLLWNVLING---CSK------------IGYL----RKAVELFGMM-P------------------------ 226 (636)
Q Consensus 191 ~~~~~~~~~~~~~~li~~---~~~------------~g~~----~~A~~~~~~m-~------------------------ 226 (636)
...+ +.+...|-..... |.. .++. +.....+... .
T Consensus 167 LR~n-pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~k 245 (568)
T KOG2396|consen 167 LRFN-PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLK 245 (568)
T ss_pred hhcC-CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHH
Confidence 6554 4445555433221 110 0111 0000000000 0
Q ss_pred --------------CCChHHHHHHH----HHHHhc---------------CCHHHHHHHHhhCCCC--ChhhHHHHHHHH
Q 006672 227 --------------KKNVASWVSLI----DGFMRK---------------GDLKKAGELFEQMPEK--GVVSWTAMINGF 271 (636)
Q Consensus 227 --------------~~~~~~~~~li----~~~~~~---------------g~~~~A~~~~~~~~~~--~~~~~~~li~~~ 271 (636)
..|+.+|.-+. +.+.+. .+.+....+|++..+. ....|+..|..|
T Consensus 246 el~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t~sm~e~YI~~~ 325 (568)
T KOG2396|consen 246 ELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPTESMWECYITFC 325 (568)
T ss_pred HHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 01111111110 000000 0001111222222111 123466666665
Q ss_pred HhC------CChHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 272 SQN------GEAEKALAMFFQMLDA-GVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 272 ~~~------g~~~~A~~l~~~m~~~-g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
... ......+.+|+..... +..++ ...|..+.-.+..... +...-..+...++..+...|..-+.....
T Consensus 326 lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~~a~~l~~e~f~~s~k~~~~kl~~~~~ 402 (568)
T KOG2396|consen 326 LERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---AREVAVKLTTELFRDSGKMWQLKLQVLIE 402 (568)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhHHHHHhhHHHhcchHHHHHHHHHHHHh
Confidence 442 2445556666665553 33443 3344444444443332 22222222223344555555554444442
Q ss_pred cC-CHHH-HHHHHhhcc----CCChhcHHHHHHHHHHcCC-h-HHHHHHHHHHhHcCCCCCHHHH-HHHHHHHHhcCcHH
Q 006672 344 CG-NIEA-ASLVFGETK----EKDLLTWTAMIWGLAIHGR-Y-EQAIQYFKKMMYSGTEPDGTVF-LAILTACWYSGQVK 414 (636)
Q Consensus 344 ~g-~~~~-A~~~~~~~~----~~~~~~~~~li~~~~~~g~-~-~~A~~~~~~m~~~g~~p~~~t~-~~ll~a~~~~g~~~ 414 (636)
.. +.+- -.++|.... .+-...|++.. .|+ . ...+.++-.....-..|+..|+ +.++.-+...|-+.
T Consensus 403 s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~ 477 (568)
T KOG2396|consen 403 SKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYK 477 (568)
T ss_pred hcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchH
Confidence 21 1111 112222222 23444565555 122 1 1222222222333355665554 34556666778888
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHH---HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLL---SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
+|...+..+.. -.+|+...|..+|..= ..+| +..+.+.|+.|... .. .|+..|......-...|+.+.+-
T Consensus 478 ~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~---fg-~d~~lw~~y~~~e~~~g~~en~~ 550 (568)
T KOG2396|consen 478 KARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE---FG-ADSDLWMDYMKEELPLGRPENCG 550 (568)
T ss_pred HHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH---hC-CChHHHHHHHHhhccCCCccccc
Confidence 88888888764 3456677777777542 3344 77777888777643 22 46677777777777888888777
Q ss_pred HHHHHHHh
Q 006672 492 RVRTLMQR 499 (636)
Q Consensus 492 ~~~~~m~~ 499 (636)
.++.++.+
T Consensus 551 ~~~~ra~k 558 (568)
T KOG2396|consen 551 QIYWRAMK 558 (568)
T ss_pred HHHHHHHH
Confidence 77665543
No 328
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.14 E-value=41 Score=30.24 Aligned_cols=89 Identities=7% Similarity=-0.039 Sum_probs=53.0
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHH-----HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV-----VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
...+...|++++|..-++.... .|.-+.+.. |.......|.+|+|+..++...+..+ .+..-..-+
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-----~~~~~elrG 166 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-----AAIVAELRG 166 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-----HHHHHHHhh
Confidence 3456677777777777776552 233333333 33456667777777777663221110 122344557
Q ss_pred HHHHHcCChhHHHHHHHHHHhCC
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+++...|+-++|..-|++..+.+
T Consensus 167 Dill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 167 DILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hHHHHcCchHHHHHHHHHHHHcc
Confidence 77788888888888888777755
No 329
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.51 E-value=78 Score=33.01 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcC-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
.-..+..++-+.|+.++|.+.+.++.+.. ......+...|+..+...+.+.++..++.+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 33445555667777788877777776543 22244566777777888888888777776654
No 330
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.48 E-value=2.5 Score=25.08 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888999999999999999988764
No 331
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.43 E-value=8.9 Score=28.59 Aligned_cols=49 Identities=6% Similarity=-0.067 Sum_probs=24.8
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
+....++|+..|....+...-.|+ -.+..+++.+|...|++.+++++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666555542222222 2344555566666666666555544
No 332
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=80.10 E-value=26 Score=29.89 Aligned_cols=78 Identities=13% Similarity=0.237 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHhccCC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHCCCCCCcccHH
Q 006672 64 RITTQLISSASLHKSIDYALSIFDHFT---------PKNLHIFNVLIRGLAENSH-FQSCISHFVFMLRLSVRPNRLTYP 133 (636)
Q Consensus 64 ~~~~~li~~~~~~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~ 133 (636)
...|+++...+.-+++....++++.+. ..+-.+|++++.+.++..- ---+..+|..|.+.+.+++..-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 346777777777777777777666553 1234456666666654443 334556666666655666666666
Q ss_pred HHHHHHHc
Q 006672 134 FVSKSVAS 141 (636)
Q Consensus 134 ~ll~~~~~ 141 (636)
.++.++.+
T Consensus 120 ~li~~~l~ 127 (145)
T PF13762_consen 120 CLIKAALR 127 (145)
T ss_pred HHHHHHHc
Confidence 66666544
No 333
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=78.87 E-value=28 Score=35.95 Aligned_cols=91 Identities=10% Similarity=0.052 Sum_probs=46.6
Q ss_pred HHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
...+|+..... ..-|...|...+.-|-+.+.+.+...+|..|...++..|+.-.|.+.- .|...-+++.|..+|.
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~w-efe~n~ni~saRalfl--- 164 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKW-EFEINLNIESARALFL--- 164 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhh-HHhhccchHHHHHHHH---
Confidence 33444444432 233555666666555555556666666666665444444444443332 2223333566666555
Q ss_pred HHHhccCCCCchhHHHH
Q 006672 461 TKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l 477 (636)
+++..+|+++..|...
T Consensus 165 -rgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 165 -RGLRFNPDSPKLWKEY 180 (568)
T ss_pred -HHhhcCCCChHHHHHH
Confidence 4445666666655443
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.86 E-value=38 Score=31.39 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=10.4
Q ss_pred HHhCCChHHHHHHHHHH
Q 006672 271 FSQNGEAEKALAMFFQM 287 (636)
Q Consensus 271 ~~~~g~~~~A~~l~~~m 287 (636)
+.-.+.+++|.++|.+.
T Consensus 24 fgg~~k~eeAadl~~~A 40 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERA 40 (288)
T ss_pred cCCCcchHHHHHHHHHH
Confidence 34445677777777654
No 335
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.51 E-value=8.9 Score=34.60 Aligned_cols=69 Identities=13% Similarity=0.029 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC-------CCChHHHHHHHHHHHhcCCHHHHH
Q 006672 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP-------KKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 181 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-------~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
+.|++.|-.+...+.-.+ ...-..+..|....+.++++.++.+.. ..|+..+.+|++.|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t-~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELET-AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456666666666553333 333333333444566666666665543 345566666666666666666553
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=78.13 E-value=17 Score=32.89 Aligned_cols=73 Identities=18% Similarity=0.076 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc---CCCCchhHHHHHhhHHhhcCCHHHHH
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN---DFGLKGAIGTALVDMYAKCGNIEAAS 351 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~ 351 (636)
++|.+.|-++...+.--++.....+...| ...+.+++++++-.+++. +-.+|+.++.+|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 66777777777766444444444444444 356777777777776652 23567788888888888888877764
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=76.96 E-value=16 Score=28.49 Aligned_cols=59 Identities=5% Similarity=-0.046 Sum_probs=40.0
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 171 (636)
++.+-++.+....+.|+.....+.|++|.+.+++..|.++++-+.... ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 455556666666778888888888888888888888888888766321 22333555444
No 338
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.28 E-value=1.4 Score=37.85 Aligned_cols=82 Identities=17% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHH
Q 006672 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
+..+.+.+.++....+++.+.+.+...+....+.++..|++.++.+...++++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 344445555566666666666544445566666666666666555555555542221 22233444444444444444
Q ss_pred HHHHH
Q 006672 383 QYFKK 387 (636)
Q Consensus 383 ~~~~~ 387 (636)
-++.+
T Consensus 91 ~Ly~~ 95 (143)
T PF00637_consen 91 YLYSK 95 (143)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44443
No 339
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=75.36 E-value=9.3 Score=29.65 Aligned_cols=41 Identities=17% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 461 TKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.++.+|+|...-..++..+...|++++|++.+-.+.+..
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34556799999999999999999999999999998887754
No 340
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.78 E-value=1.1e+02 Score=31.63 Aligned_cols=115 Identities=13% Similarity=0.049 Sum_probs=74.4
Q ss_pred CChH-HHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHH
Q 006672 42 NSTK-QLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 42 ~~~~-~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
|++. ..+++++-+....-.|+-....+.| ....|+++.+.+.+.... .....+-..+++..-+.|++++|+.+-
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 4444 4455666665554455554444443 567899999999886543 345556778888888999999999999
Q ss_pred HHhHHCCCC-CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCC
Q 006672 118 VFMLRLSVR-PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV 160 (636)
Q Consensus 118 ~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 160 (636)
.-|+...+. |...+. .....-..|-++++...++++...+.
T Consensus 381 ~~~l~~eie~~ei~~i--aa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 381 EMMLSNEIEDEEVLTV--AAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHhccccCChhheee--ecccHHHHhHHHHHHHHHHHHhccCC
Confidence 888876554 222222 22223345667788888887776553
No 341
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.68 E-value=13 Score=29.01 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=32.0
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCC-----chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKH-----PSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+.|++.+|.+.+.+..+....-.... ......++..+...|++++|...+++..+
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45666666555554444332222111 23344567777788888888888887755
No 342
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=74.31 E-value=16 Score=28.78 Aligned_cols=60 Identities=5% Similarity=-0.056 Sum_probs=35.4
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 172 (636)
+..+-++.+....+.|+.....+.|++|.+.+++..|.++++-+...- .+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445555556666677888888888888888888888888887766442 222225555443
No 343
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=74.29 E-value=1.1e+02 Score=31.56 Aligned_cols=191 Identities=10% Similarity=0.019 Sum_probs=95.2
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006672 218 AVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297 (636)
Q Consensus 218 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 297 (636)
...+.+.+..++..+....+.++.+.+..+-...+...+...+...-...+.++...+. .+...+....+ .+|..
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~ 162 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDAL 162 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHH
Confidence 44445555556666677777777777666666555555555554444444455544331 12233333332 34555
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhh-ccCCChhcHHHHHHHHHHcC
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGE-TKEKDLLTWTAMIWGLAIHG 376 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g 376 (636)
.-...+.++...+..+..-. +..+. ...+..+-..-+.+....|. .+|...+.. ...++....-.+...+...
T Consensus 163 Vra~A~raLG~l~~~~a~~~-L~~al---~d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~- 236 (410)
T TIGR02270 163 VRAAALRALGELPRRLSEST-LRLYL---RDSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA- 236 (410)
T ss_pred HHHHHHHHHHhhccccchHH-HHHHH---cCCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC-
Confidence 55555566655554332222 22222 13455555556666666666 445444443 3334433333333333333
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+++++.+..+.+. ..+-...+.++...|+...+.-+.+.|.
T Consensus 237 ~~~~a~~~L~~ll~d-----~~vr~~a~~AlG~lg~p~av~~L~~~l~ 279 (410)
T TIGR02270 237 GGPDAQAWLRELLQA-----AATRREALRAVGLVGDVEAAPWCLEAMR 279 (410)
T ss_pred CchhHHHHHHHHhcC-----hhhHHHHHHHHHHcCCcchHHHHHHHhc
Confidence 233555555555542 2244555666666666665555555443
No 344
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.61 E-value=32 Score=31.82 Aligned_cols=67 Identities=9% Similarity=0.129 Sum_probs=44.1
Q ss_pred hHHHHHHHHHHhcCCchHH-------HHHHHHHHHHHhccCCC----CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 434 KHHTVVVNLLSRVGQDSQG-------YQNSQNSFTKLLQLKPK----HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A-------~~~~~~~~~~~~~l~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
..+--+..+|...|+-+.. .+.|+++.+. +-.|. .......++.++.+.|++++|.+.|.++...+-
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~--e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYEN--EDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHh--CcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 3455566777777774444 4444444332 11222 235667889999999999999999999987653
No 345
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=73.55 E-value=1.4e+02 Score=32.81 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=33.9
Q ss_pred hhHHhhcCCHHHHHHHHhhcc--CCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHHHHHHHHHHHHh---cC
Q 006672 338 VDMYAKCGNIEAASLVFGETK--EKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGTVFLAILTACWY---SG 411 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~---~g 411 (636)
..++.-+|++|.|.+.+-+.. ..|.+.....+ ...|-..-.-..-..+.... -.|.+.-|..++..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL---~~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIAL---AYYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHH---HHTT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHH---HHcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 344556788888888877722 12333222222 22222211111112222210 11112556777776654 56
Q ss_pred cHHHHHHHHHHhH
Q 006672 412 QVKLALNFFDSMR 424 (636)
Q Consensus 412 ~~~~a~~~~~~m~ 424 (636)
+..+|.+++-.+.
T Consensus 342 d~~~Al~Y~~li~ 354 (613)
T PF04097_consen 342 DPREALQYLYLIC 354 (613)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHH
Confidence 7888888887665
No 346
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.37 E-value=85 Score=29.75 Aligned_cols=189 Identities=12% Similarity=0.118 Sum_probs=120.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCcHHHHHHHHHHHH---cCC--CCchhHHHHHhhHHhhc
Q 006672 273 QNGEAEKALAMFFQMLDAGVRAND---FTVVSALSACAKVGALEAGVRVHNYISC---NDF--GLKGAIGTALVDMYAKC 344 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~li~~~~~~ 344 (636)
+...+++|+.-|++..+..-.-.. ..+..++....+.+++++....+.+++. ..+ ..+....|++++.-+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 345789999999998874322222 3455677788899999988887777653 111 23455678888877777
Q ss_pred CCHHHHHHHHhhccC-----CChhcH----HHHHHHHHHcCChHHHHHHHHHHhHcCCC----CC-------HHHHHHHH
Q 006672 345 GNIEAASLVFGETKE-----KDLLTW----TAMIWGLAIHGRYEQAIQYFKKMMYSGTE----PD-------GTVFLAIL 404 (636)
Q Consensus 345 g~~~~A~~~~~~~~~-----~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~-------~~t~~~ll 404 (636)
.+.+.-...++.-.+ +|...| +-+...|...|.+.+..++++++..+--. -| ...|..=+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 777766666654332 333333 45777788888888888888888653111 11 12455566
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH----HHHHHhcCCchHHHHHHHHHHH
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV----VNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
..|....+-..-..++++.......-|.+.....+ +.+..+.|++++|..-|-++.+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 77777777777777787765433444555443322 2345577888888765554443
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=73.23 E-value=2.6e+02 Score=35.38 Aligned_cols=64 Identities=8% Similarity=0.014 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
.+.|.........+|+++.|...+-.+.+. .-+..+.-.+......|+-..|+.++++-.+...
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~------r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKES------RLPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhc------ccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 567888888888899999998887665543 2456888889999999999999999998876543
No 348
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.99 E-value=91 Score=29.92 Aligned_cols=82 Identities=16% Similarity=0.132 Sum_probs=43.1
Q ss_pred CchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHH
Q 006672 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW 408 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 408 (636)
-++.....+...|.+.|++.+|+.-|-....++...+..++.-....|...++ |... ...+--|.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi-~RaVL~yL 152 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFI-ARAVLQYL 152 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHH-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHH-HHHHHHHH
Confidence 46778888999999999999999877555443333332233222222222222 1111 11222345
Q ss_pred hcCcHHHHHHHHHHhHh
Q 006672 409 YSGQVKLALNFFDSMRF 425 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~ 425 (636)
-.++...|...++...+
T Consensus 153 ~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTS 169 (260)
T ss_dssp HTTBHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 56777777777766654
No 349
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.94 E-value=6.9 Score=21.98 Aligned_cols=20 Identities=20% Similarity=0.258 Sum_probs=10.6
Q ss_pred HHHHHHHhcCChHHHHHHHh
Q 006672 169 HLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~ 188 (636)
.+...+...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555555555555543
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=72.78 E-value=15 Score=35.06 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+-....|..+|.+.+|.++.+ +++.++|-+...|-.|++.|+..|+--.|.+.++++.+
T Consensus 283 gkva~~yle~g~~neAi~l~q----r~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQ----RALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHH----HHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 344567888999999998877 45578998999999999999999998888888887754
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=71.62 E-value=42 Score=34.47 Aligned_cols=141 Identities=9% Similarity=0.091 Sum_probs=89.7
Q ss_pred HcCChHHHHH-HHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHH
Q 006672 374 IHGRYEQAIQ-YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQG 452 (636)
Q Consensus 374 ~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 452 (636)
..|+...|-+ ++.-++...-.|+.+...+.+ +.+.|.++.+.+.+..... -+-....+..+++..+.+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3566655544 445455544556655544443 5678999999988876643 3445567778889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCC
Q 006672 453 YQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG 524 (636)
Q Consensus 453 ~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~ 524 (636)
...-+.+... ++ +++.....-+-.-...|-++++.-.|++....+.+.+.| |+..-.....|-.|+
T Consensus 377 ~s~a~~~l~~--ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 377 LSTAEMMLSN--EI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG--WVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHhcc--cc--CChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc--ceeeeccceeccCcc
Confidence 9887766543 33 233333333333445677899999999988755444444 555555555565554
No 352
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.07 E-value=80 Score=28.49 Aligned_cols=88 Identities=14% Similarity=0.009 Sum_probs=46.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHcCCCCc--hhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhc--HHHHHHHHHHcCChHH
Q 006672 305 ACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVDMYAKCGNIEAASLVFGETKEKDLLT--WTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~ 380 (636)
.+...++++.|...++......-+.+ ..+--.|.......|..++|..+++....++-.+ ...-...+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 34556666666666665553211111 1111234455566666666666666666553332 2333445666666666
Q ss_pred HHHHHHHHhHcC
Q 006672 381 AIQYFKKMMYSG 392 (636)
Q Consensus 381 A~~~~~~m~~~g 392 (636)
|..-|++.++.+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 666666666644
No 353
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=70.84 E-value=8.1 Score=21.83 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.|..++..|...|++++|...+++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456667777777777777777766654
No 354
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.76 E-value=1.6e+02 Score=31.91 Aligned_cols=141 Identities=16% Similarity=0.055 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHH----HH-HHhcCChHHHHHHHhhCCC-------CCCCCChhhHHHHHHHHHhc
Q 006672 145 LSLGRGLHCLIVKSGVEYDAFVRVHLA----DM-YVQLGKTRGAFKVFDETPE-------KNKSESVLLWNVLINGCSKI 212 (636)
Q Consensus 145 ~~~a~~~~~~~~~~g~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~~~~~~~~~~~~li~~~~~~ 212 (636)
...+.+.++...+.|. ......+. .+ +....+++.|...|+...+ .| +..+...+...|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 4567777777777662 22222222 22 3455688888888877754 22 334555566666654
Q ss_pred C-----ChHHHHHHHhhCCC-CChHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCC-hhhHHHHHHHHH----hCCChH
Q 006672 213 G-----YLRKAVELFGMMPK-KNVASWVSLIDGFMRK---GDLKKAGELFEQMPEKG-VVSWTAMINGFS----QNGEAE 278 (636)
Q Consensus 213 g-----~~~~A~~~~~~m~~-~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~-~~~~~~li~~~~----~~g~~~ 278 (636)
. +.+.|..++.+... .++...-.+...|... .+...|.++|......+ +.+.-.+...|. ..-+.+
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 3 44556666655442 2222222222222222 24556666666554433 222222221111 112455
Q ss_pred HHHHHHHHHHHCC
Q 006672 279 KALAMFFQMLDAG 291 (636)
Q Consensus 279 ~A~~l~~~m~~~g 291 (636)
.|..++.+..+.|
T Consensus 382 ~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHcc
Confidence 5555555555555
No 355
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=70.02 E-value=54 Score=26.22 Aligned_cols=78 Identities=12% Similarity=0.111 Sum_probs=41.7
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..++|..|.+.+...+. ....+--.-+..+.+.|++++|...=.....||...|-+|-. .+.|-.+++...+.++-.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 45667777777665542 233333344455666777777744444444567777666543 356666666666666554
Q ss_pred c
Q 006672 391 S 391 (636)
Q Consensus 391 ~ 391 (636)
.
T Consensus 98 ~ 98 (116)
T PF09477_consen 98 S 98 (116)
T ss_dssp -
T ss_pred C
Confidence 3
No 356
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=69.94 E-value=1.5e+02 Score=31.11 Aligned_cols=92 Identities=10% Similarity=0.090 Sum_probs=44.8
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 407 (636)
|.....++++.++..-.+.-.+.+..+|.+ .+-..+-.++..|.++ ..+.-..+|+++.+ ..-|...+..-+.-+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHHH
Confidence 334444555555555555555555555543 3344555555555555 33455555555555 223333333333333
Q ss_pred HhcCcHHHHHHHHHHhH
Q 006672 408 WYSGQVKLALNFFDSMR 424 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~ 424 (636)
...++...+..+|.++.
T Consensus 142 yEkik~sk~a~~f~Ka~ 158 (711)
T COG1747 142 YEKIKKSKAAEFFGKAL 158 (711)
T ss_pred HHHhchhhHHHHHHHHH
Confidence 33355555555555554
No 357
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.89 E-value=56 Score=34.72 Aligned_cols=98 Identities=11% Similarity=-0.045 Sum_probs=47.2
Q ss_pred cCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHH
Q 006672 75 LHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154 (636)
Q Consensus 75 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 154 (636)
+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 344444444443321 2344466666666666666666666555433 33444445555554444444444
Q ss_pred HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhh
Q 006672 155 IVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDE 189 (636)
Q Consensus 155 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 189 (636)
..+.|.. |.-.-+|...|+++++.+++.+
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 4443311 2222344555666666555543
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.71 E-value=1.1e+02 Score=29.52 Aligned_cols=72 Identities=8% Similarity=0.132 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH-----HcCCCCchhHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS-----CNDFGLKGAIGT 335 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~ 335 (636)
+++.....|..+|.+.+|.++-++.+... +.+...+-.++..+...|+--.+..-++.+. +.|+..+-.+++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 34455677888888888888888887754 5567777788888888888666666665543 246665555443
No 359
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=69.31 E-value=8.6 Score=25.09 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.|+.+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57888999999999999999888644
No 360
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=68.77 E-value=11 Score=36.66 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=61.4
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
+-|.+.|.+++|+..|...+. +.| ++..|..-..+|.+..++..|+.-.+.+. .++..-.-+|..-+.+-..
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai----aLd~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI----ALDKLYVKAYSRRMQARES 177 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH----HhhHHHHHHHHHHHHHHHH
Confidence 457789999999999998774 556 88889999999999999988877665433 4443334455555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 006672 484 EGRWKDVARVRTLMQR 499 (636)
Q Consensus 484 ~g~~~~A~~~~~~m~~ 499 (636)
.|+.++|.+-.+...+
T Consensus 178 Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLA 193 (536)
T ss_pred HhhHHHHHHhHHHHHh
Confidence 5666666665555443
No 361
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.26 E-value=13 Score=24.34 Aligned_cols=25 Identities=16% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCC
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDAG 291 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~g 291 (636)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4566667777777777776666543
No 362
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=67.56 E-value=3.5e+02 Score=34.45 Aligned_cols=279 Identities=10% Similarity=0.046 Sum_probs=154.4
Q ss_pred HHHHHHHhcCChHHHHHHHhhC----CCCC--hHHHHHHHHHHHhcCCHHHHHHHHhh-CCCCChhhHHHHHHHHHhCCC
Q 006672 204 VLINGCSKIGYLRKAVELFGMM----PKKN--VASWVSLIDGFMRKGDLKKAGELFEQ-MPEKGVVSWTAMINGFSQNGE 276 (636)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m----~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 276 (636)
.+..+-.+.+.+..|+..+++- .+.+ ...+..+...|+..+++|....+... ...++ ...-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 4555667788899999999883 2222 23455555688888888887777763 33333 2234556677899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHH-HHHhhHHhhcCCHHHHHHHHh
Q 006672 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIG-TALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 277 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~ 355 (636)
+..|...|+++.+.+ ++...+++.++......+.++...-..+...... ++...-+ +.=+.+--+.++++.......
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 999999999999864 4446778888888778888877776555544332 3333333 333444467777777666655
Q ss_pred hccCCChhcHHHH-HH-HHHHcC--ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH----------
Q 006672 356 ETKEKDLLTWTAM-IW-GLAIHG--RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFD---------- 421 (636)
Q Consensus 356 ~~~~~~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~---------- 421 (636)
..+..+|.+. +. .+.+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.-
T Consensus 1543 ---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~ 1611 (2382)
T KOG0890|consen 1543 ---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELEN 1611 (2382)
T ss_pred ---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHH
Confidence 5566677665 22 222221 2111222333333321111 122222222222221111
Q ss_pred HhHhhcCCCCCh------hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc--C----CCCchhHHHHHHHHHHcCChhH
Q 006672 422 SMRFDYFIEPSV------KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL--K----PKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 422 ~m~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l--~----p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
......+..++. ..|..- +.+.+..-.+.+-+-...+..+.+ + ..-...|...+.....+|+++.
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~R---l~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNR---LERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHhhccCccccccccchhHHHH---HHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111112333332 222222 222233222333333333333332 2 2345689999999999999999
Q ss_pred HHHHHHHHHhCC
Q 006672 490 VARVRTLMQRRS 501 (636)
Q Consensus 490 A~~~~~~m~~~g 501 (636)
|...+-...+.+
T Consensus 1689 A~nall~A~e~r 1700 (2382)
T KOG0890|consen 1689 AQNALLNAKESR 1700 (2382)
T ss_pred HHHHHHhhhhcc
Confidence 998887777765
No 363
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=67.36 E-value=65 Score=30.81 Aligned_cols=87 Identities=14% Similarity=0.064 Sum_probs=57.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHc--CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYS--GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
=|.+++..+++.+++...-+--+. .++| .....-|-.|++.+.+..+.++-....++.+ .-+..-|..++++|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPp--kIleLCILLysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPP--KILELCILLYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLL 165 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCH--HHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHH
Confidence 367888888888887665444331 1333 3444445568899999888888877775322 2223347777776654
Q ss_pred -----cCCchHHHHHHH
Q 006672 446 -----VGQDSQGYQNSQ 457 (636)
Q Consensus 446 -----~g~~~~A~~~~~ 457 (636)
.|.++||++++.
T Consensus 166 ~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHhccccHHHHHHHHh
Confidence 799999999874
No 364
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=66.97 E-value=1.3e+02 Score=29.37 Aligned_cols=169 Identities=11% Similarity=0.075 Sum_probs=88.4
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
.-+++.+...++-++......-++.+.+.+.++.+..++...-..+. +-.++.. +-.+.++-++++.+. +.|
T Consensus 20 fPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed-----~p~a~~e--kr~~Vla~lkeLe~e-v~p 91 (432)
T KOG2758|consen 20 FPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSED-----MPNALVE--KRTEVLAELKELEEE-VAP 91 (432)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhccccccc-----chHHHHH--HHHHHHHHHHHHHHH-HHH
Confidence 34445555556666667777777778888888888888877632110 1111111 112223333333221 111
Q ss_pred CHHHHHHHH---HHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 396 DGTVFLAIL---TACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 396 ~~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
...++ ..-.......+....++.+.+.+++.|+ .++.--+......+|++..|-..+-... .+- .+.+.
T Consensus 92 ----iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r--~l~-~~~d~ 164 (432)
T KOG2758|consen 92 ----IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYR--ALV-SDPDR 164 (432)
T ss_pred ----HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHH--Hhc-CCcch
Confidence 11111 1111122233446777888888888887 4555556666778999999988765322 111 22233
Q ss_pred hhHHHH-HHH--HHHcCChhHHHHHHHHHHh
Q 006672 472 SSYVLL-SNI--YAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 472 ~~~~~l-~~~--~~~~g~~~~A~~~~~~m~~ 499 (636)
...+.+ +.. -.-..+|+.|.+-+.++++
T Consensus 165 n~lsalwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 165 NYLSALWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 222222 111 1124689999887776665
No 365
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=65.82 E-value=68 Score=35.02 Aligned_cols=109 Identities=13% Similarity=0.218 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH----------HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFT----------VVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
+...++-.|....+++...++.+.+... ||..- |.-.++---+.|+-+.|..+.-.+++..-+..+
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 4555666677777777777777777652 33221 212222222345566666555555543212111
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
++||-||++ |+.|- +-+.|...+..+.|.+.|++..+ +.|+..
T Consensus 279 ------Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 279 ------DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred ------ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 234444432 22221 11234445566677778887777 666643
No 366
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.67 E-value=17 Score=27.12 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=35.8
Q ss_pred HcCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhcCcHHHHHHHH
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVKLALNFF 420 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~ 420 (636)
...+.++|+..|+..++.-..|.. .++..++.|++..|.+++.+.+-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778999999998875444332 37888889999999998887654
No 367
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=65.34 E-value=11 Score=21.14 Aligned_cols=27 Identities=19% Similarity=0.369 Sum_probs=15.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.|..+...+...|++++|...|++..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555555566666666666665554
No 368
>PRK11619 lytic murein transglycosylase; Provisional
Probab=65.01 E-value=2.3e+02 Score=31.44 Aligned_cols=244 Identities=8% Similarity=-0.048 Sum_probs=125.1
Q ss_pred CCHHHHHHHHhhCCCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHH
Q 006672 244 GDLKKAGELFEQMPEKG-------VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 244 g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
.+.+.|..++....... ...+..+.......+...+|...+....... .+......-+......++++.+.
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHH
Confidence 34567777776653222 2344555444444433455666655543221 13333333344444667777766
Q ss_pred HHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 317 RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
..+..|.... .....-.--+..++...|+.++|...|+.+... .+|-.++.+- +.|..-. ... ....+.
T Consensus 333 ~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~--~~fYG~LAa~-~Lg~~~~-~~~------~~~~~~ 401 (644)
T PRK11619 333 TWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ--RGFYPMVAAQ-RLGEEYP-LKI------DKAPKP 401 (644)
T ss_pred HHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC--CCcHHHHHHH-HcCCCCC-CCC------CCCCch
Confidence 6666654322 223333344566666678888888888777543 2233332221 1221100 000 000000
Q ss_pred -----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH-HhccCCCC
Q 006672 397 -----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK-LLQLKPKH 470 (636)
Q Consensus 397 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~l~p~~ 470 (636)
...-..-+..+...|....|...+..+.. . .+......+...-.+.|..+-|.....+.... .+.+ .-
T Consensus 402 ~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~--~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~--rf 475 (644)
T PRK11619 402 DSALTQGPEMARVRELMYWNMDNTARSEWANLVA--S--RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEE--RF 475 (644)
T ss_pred hhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHh--c--CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHH--hC
Confidence 00112233456678999999999988874 2 34455566777777888888887766533211 1111 12
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCC
Q 006672 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 506 (636)
+..|...+..+++.-..+.+.-.---.++.+..|..
T Consensus 476 p~~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~a 511 (644)
T PRK11619 476 PLAWNDEFRRYTSGKGIPQSYAMAIARQESAWNPKA 511 (644)
T ss_pred CcchHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCC
Confidence 335666666666666666665443444566666553
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=64.53 E-value=86 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 394 EPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
.++..+-..+..++.++. ++.+++.+++.+.+ .-.|+ -+..--|.-++.|.++++++.++.+ .+++.+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd----~ll~~e~ 102 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVD----ALLETEP 102 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHH----HHHhhCC
Confidence 455555555666776655 56678888888874 12232 2233345556789999999999887 4456788
Q ss_pred CCch
Q 006672 469 KHPS 472 (636)
Q Consensus 469 ~~~~ 472 (636)
+|..
T Consensus 103 ~n~Q 106 (149)
T KOG3364|consen 103 NNRQ 106 (149)
T ss_pred CcHH
Confidence 7543
No 370
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=63.82 E-value=83 Score=26.20 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=35.6
Q ss_pred chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
.+++.++|+.+..+. +.-.-+..|...+..+...|++++|.++++.
T Consensus 79 ~~~~~~if~~l~~~~--IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 SSDPREIFKFLYSKG--IGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp BSHHHHHHHHHHHHT--TSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 348888888887773 4456778888899999999999999988875
No 371
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=63.58 E-value=1.7e+02 Score=29.62 Aligned_cols=159 Identities=16% Similarity=0.225 Sum_probs=81.9
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC------CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc---------CCCCCH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---------GTEPDG 397 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------g~~p~~ 397 (636)
.+.-+.+-|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++........+.... .+.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 345567778888888888888887554 12335555555555567776666666555442 122222
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC-----CC-ChhHHHHHHHHHHhcCCchHHHHHHH-HHHHHHhccCCCC
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFI-----EP-SVKHHTVVVNLLSRVGQDSQGYQNSQ-NSFTKLLQLKPKH 470 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~~~l~p~~ 470 (636)
..+..+..-+ .+.+..|.+.|-....+... .| |+.+|. .+.+++--++-+--..++. ...+..++++|.
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYg-gLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq- 307 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYG-GLCALATFDRQDLKLNVIKNESFKLFLELEPQ- 307 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHH-hhHhhccCCHHHHHHHHHcchhhhhHHhcChH-
Confidence 3343333332 34677776666544322221 23 233343 2233333333332333333 345566677664
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+..|..-| ++++....+++++++.
T Consensus 308 --lr~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 308 --LREILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred --HHHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 444444433 3456666666665543
No 372
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=63.40 E-value=29 Score=32.20 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=47.5
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCCh-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCCh
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPSV-KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 487 (636)
....++.|...+.+.+. +.|+. .-|..-+-.+.+..+++.+.+--. +.+++.|+..-....|+........+
T Consensus 22 ~~k~y~~ai~~y~raI~---~nP~~~~Y~tnralchlk~~~~~~v~~dcr----ralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAIC---INPTVASYYTNRALCHLKLKHWEPVEEDCR----RALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred chhhhchHHHHHHHHHh---cCCCcchhhhhHHHHHHHhhhhhhhhhhHH----HHHhcChHHHHHHHHHHHHHHhhccc
Confidence 33445555555544442 45554 334445555555555555554433 33456666666666677777777777
Q ss_pred hHHHHHHHHHHh
Q 006672 488 KDVARVRTLMQR 499 (636)
Q Consensus 488 ~~A~~~~~~m~~ 499 (636)
++|+.++.+...
T Consensus 95 ~eaI~~Lqra~s 106 (284)
T KOG4642|consen 95 DEAIKVLQRAYS 106 (284)
T ss_pred cHHHHHHHHHHH
Confidence 777777666644
No 373
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=62.88 E-value=8.6 Score=22.60 Aligned_cols=20 Identities=30% Similarity=0.677 Sum_probs=9.1
Q ss_pred HHHHcCChHHHHHHHHHHhH
Q 006672 371 GLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~ 390 (636)
++.+.|++++|.+.|+++++
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH
Confidence 34444444444444444443
No 374
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.45 E-value=28 Score=36.61 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=81.2
Q ss_pred HHHHHHHhhccCCChhcHHHHH--HHH-HHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 348 EAASLVFGETKEKDLLTWTAMI--WGL-AIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~li--~~~-~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
+-+..+|-.|..++...|-+|= ..| .-.|+...|...+..... ..|- .+....|.+...+.|..-+|-.++.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 4455666666666555554332 122 335778888887777765 3443 34566667777777777778777776
Q ss_pred hHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 423 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
...- . ...+-++-.++.+|.-..+.+.|++.++++. +++|+++..-+.|..+-+
T Consensus 668 ~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~----~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 668 ALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQAL----KLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHH----hcCCCChhhHHHHHHHHH
Confidence 6531 1 3445566677788888888888888777554 567888777766655433
No 375
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.13 E-value=82 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
-|..+++.|...|..++|.+++.+..+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888999999999999999886665
No 376
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.93 E-value=98 Score=26.49 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 399 VFLAILTACWYSGQ-VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 399 t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
+|..++.+.++... ---+..+|+-+++ .+.++++..|.+++.+..+
T Consensus 81 sf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~ 127 (145)
T PF13762_consen 81 SFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALR 127 (145)
T ss_pred hHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHc
Confidence 34444444444333 2233444444442 3444445555555544433
No 377
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=59.63 E-value=1.5e+02 Score=30.87 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=62.8
Q ss_pred hHHhhcCCHHHHHHHHhhccC---C---------ChhcHHHHHHHHHHcCChHHHHHHHHHHhH-------cCCCCCH--
Q 006672 339 DMYAKCGNIEAASLVFGETKE---K---------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMY-------SGTEPDG-- 397 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~---~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-------~g~~p~~-- 397 (636)
..+.-.|++..|.+++....- + .-..||.|...+.+.|.+..+..+|.+..+ .|++|..
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 345557888888888765431 1 223578888777788888777777777663 3555432
Q ss_pred ---------HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 398 ---------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 398 ---------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
.+|+. .-.|.+.|++-.|.+.|...... +..++..|--|..++.
T Consensus 328 tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v--fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 328 TLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV--FHRNPRLWLRLAECCI 380 (696)
T ss_pred ehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH--HhcCcHHHHHHHHHHH
Confidence 12322 22456777777777777766643 3455566666655554
No 378
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.49 E-value=57 Score=24.97 Aligned_cols=65 Identities=12% Similarity=0.227 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHH
Q 006672 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113 (636)
Q Consensus 47 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 113 (636)
+..+++.++..|+- +..-.+.+-..-...|+.+.|+++++.++ +.+..|..+++++...|+-.-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 45667777777643 22333333333335688888999998888 8888888888888887765544
No 379
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.27 E-value=3.4e+02 Score=31.60 Aligned_cols=45 Identities=4% Similarity=0.061 Sum_probs=20.4
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGL 104 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 104 (636)
++++.+-..-+..+.+.+..+....+...+..++...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455555555566655555433223333333344443333333333
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=58.97 E-value=55 Score=22.37 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=21.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...++-++.+.|++++|.+..+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45677889999999999999999987
No 381
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.80 E-value=3.5e+02 Score=31.54 Aligned_cols=161 Identities=11% Similarity=0.064 Sum_probs=84.7
Q ss_pred HHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHHCCCCCCHHHH
Q 006672 221 LFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEK-ALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 221 ~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~p~~~t~ 299 (636)
+...+..+|..+-...+.++.+.+..+. +.....+++...-...+.++...+..+. +...+..+.. .+|...-
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~~~~~---l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR 792 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVDDVES---VAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVR 792 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhcccCcHH---HHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHH
Confidence 3344445666666666666665544332 2233344454444444555555554332 3344444443 3455666
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChH
Q 006672 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (636)
...+.++...+..+.+...+..+++ .++..+-...+.++.+.+..+....+...+..++...-...+.++.+.+...
T Consensus 793 ~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~ 869 (897)
T PRK13800 793 AAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDP 869 (897)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH
Confidence 6667777766665444333333332 3455566666666666665444444444444566666666666666653344
Q ss_pred HHHHHHHHHhH
Q 006672 380 QAIQYFKKMMY 390 (636)
Q Consensus 380 ~A~~~~~~m~~ 390 (636)
.+...+..+.+
T Consensus 870 ~a~~~L~~al~ 880 (897)
T PRK13800 870 AARDALTTALT 880 (897)
T ss_pred HHHHHHHHHHh
Confidence 56666666555
No 382
>PF15469 Sec5: Exocyst complex component Sec5
Probab=58.67 E-value=1.3e+02 Score=26.99 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=59.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLL 443 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 443 (636)
+..++..-.+......++.++++..- -...-.-+.-|...|+++.+...|.+...-++-.. ....+..
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~f------lF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~----- 128 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRF------LFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK----- 128 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH-----
Confidence 33344433344445555555555432 12223445667778888888888877764322111 1222211
Q ss_pred HhcCCchHHHHHHHHHHHHHhc--cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEE
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQ--LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIE 512 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~--l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~ 512 (636)
-+++...+++...+.+.+ .+|+ ...++..++...+.+.+...+|.+.|+.
T Consensus 129 ----v~~eve~ii~~~r~~l~~~L~~~~---------------~s~~~~~~~i~~Ll~L~~~~dPi~~~l~ 180 (182)
T PF15469_consen 129 ----VWSEVEKIIEEFREKLWEKLLSPP---------------SSQEEFLKLIRKLLELNVEEDPIWYWLE 180 (182)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHhCCC---------------CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 123334444333332221 1121 3455667777777777887788776653
No 383
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.03 E-value=60 Score=31.62 Aligned_cols=101 Identities=17% Similarity=0.175 Sum_probs=57.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCCCCCH---HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHH-HHHH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDG---TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTV-VVNL 442 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~-l~~~ 442 (636)
+.-+-.+.|+..+|.+.|+.+.+. .|-. ..-..++.+|.....+.+...++-+.- +...+.+ ...|++ ++.+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-dislPkSA~icYTaALLK~ 357 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DISLPKSAAICYTAALLKT 357 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCcchHHHHHHHHHHHH
Confidence 444445689999999999998773 2322 234567888888877777777766553 2222222 233432 2222
Q ss_pred H-----------HhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 443 L-----------SRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 443 ~-----------~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
- .|.|- ..|+.---++..+.++.+|.-|.
T Consensus 358 RAVa~kFspd~asrRGL-S~AE~~AvEAihRAvEFNPHVPk 397 (556)
T KOG3807|consen 358 RAVSEKFSPETASRRGL-STAEINAVEAIHRAVEFNPHVPK 397 (556)
T ss_pred HHHHhhcCchhhhhccc-cHHHHHHHHHHHHHhhcCCCCcH
Confidence 1 22332 23333333556667788885444
No 384
>PRK10941 hypothetical protein; Provisional
Probab=57.97 E-value=1e+02 Score=29.73 Aligned_cols=60 Identities=18% Similarity=0.106 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+.+-.+|.+.++++.|....+. ++.+.|+++.-+---+-+|.+.|.+..|..-++.-.+.
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~----ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEA----LLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4555667777777777777663 34667777776766777777888888777777766553
No 385
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=57.84 E-value=1.9e+02 Score=28.49 Aligned_cols=26 Identities=15% Similarity=0.039 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
.+.....-|++.|+-+.|.+.+.+..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~ 131 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTY 131 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 45555566777888777777766553
No 386
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.76 E-value=1.1e+02 Score=29.25 Aligned_cols=85 Identities=12% Similarity=0.098 Sum_probs=52.5
Q ss_pred HHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh--
Q 006672 268 INGFSQNGEAEKALAMFFQMLD--AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK-- 343 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-- 343 (636)
|.+++..++|.+++.+.-+--+ ..++|...-. -|-.|++.+....+.++-..-++..-..+..-|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6788888888888776655443 2344443333 334467777777777776665543223333446666666544
Q ss_pred ---cCCHHHHHHHH
Q 006672 344 ---CGNIEAASLVF 354 (636)
Q Consensus 344 ---~g~~~~A~~~~ 354 (636)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 58888888776
No 387
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.15 E-value=55 Score=29.65 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=19.4
Q ss_pred HHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+.++..| ++..|..++.++...|+.++|.++.+++..
T Consensus 136 ~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 136 RLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3333344 455555555555555555555555555544
No 388
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.09 E-value=2.6e+02 Score=29.46 Aligned_cols=156 Identities=14% Similarity=0.172 Sum_probs=89.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
..-+++..+.++-.+.-...+..+|..-| -+...|..++.+|... ..++-..+++++++..+ .|+....-|++.|-
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~yE 143 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKYE 143 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHHH
Confidence 44456667777777777777777777643 3556667777777666 45566667777666553 34444555666665
Q ss_pred hcCCHHHHHHHHhhccCC------Ch---hcHHHHHHHHHHcCChHHHHHHHHHHhHc-CCCCCHHHHHHHHHHHHhcCc
Q 006672 343 KCGNIEAASLVFGETKEK------DL---LTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPDGTVFLAILTACWYSGQ 412 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~ 412 (636)
+ ++.+.+...|..+..+ +. ..|.-++..- ..+.+..+.+..+.... |..--.+.+..+-.-|+...+
T Consensus 144 k-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN 220 (711)
T COG1747 144 K-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENEN 220 (711)
T ss_pred H-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccC
Confidence 5 6666666666655431 11 1455544321 23455555555555432 222233445555556666667
Q ss_pred HHHHHHHHHHhHh
Q 006672 413 VKLALNFFDSMRF 425 (636)
Q Consensus 413 ~~~a~~~~~~m~~ 425 (636)
+++|++++..+.+
T Consensus 221 ~~eai~Ilk~il~ 233 (711)
T COG1747 221 WTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777666653
No 389
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.95 E-value=7.3 Score=37.97 Aligned_cols=93 Identities=12% Similarity=0.210 Sum_probs=73.6
Q ss_pred HhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCCh
Q 006672 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 487 (636)
...|.++.|++.|...+. --+|....|.--..++.+.++...|++-+.. .++++|+...-|-.=+.+....|+|
T Consensus 125 ln~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~----A~ein~Dsa~~ykfrg~A~rllg~~ 198 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDF----AIEINPDSAKGYKFRGYAERLLGNW 198 (377)
T ss_pred hcCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhh----hhccCcccccccchhhHHHHHhhch
Confidence 356788999999888774 2244566777777888888888888887764 4578998888888888888889999
Q ss_pred hHHHHHHHHHHhCCCccCC
Q 006672 488 KDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 488 ~~A~~~~~~m~~~g~~~~~ 506 (636)
++|...+....+.++....
T Consensus 199 e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 199 EEAAHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHHHHhccccHHH
Confidence 9999999999998876654
No 390
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.94 E-value=2.1e+02 Score=28.43 Aligned_cols=120 Identities=10% Similarity=0.099 Sum_probs=65.2
Q ss_pred HHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh---cCCchHHHH
Q 006672 379 EQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR---VGQDSQGYQ 454 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~ 454 (636)
+.-+.+++++++. .|+ ......++..+.+..+.++..+-|+++... .+-+...|...++.... .-.+++...
T Consensus 48 E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 4556666666664 344 345556666666666666666667766642 12245566666554433 223556666
Q ss_pred HHHHHHHHHhccCCCC-------c-------hhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 455 NSQNSFTKLLQLKPKH-------P-------SSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 455 ~~~~~~~~~~~l~p~~-------~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
+|.+..+.+....... + ..+..+.....++|..+.|..+++.+.+.++
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 6665554443321110 0 1222333445567777777777777777665
No 391
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=56.93 E-value=88 Score=28.79 Aligned_cols=76 Identities=11% Similarity=-0.008 Sum_probs=47.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh-hcCCCCChhHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF-DYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~-~~~~~p~~~~~~~l~~~ 442 (636)
.+..++.+.+.+...+|+...++-++ -+|. ..+-..++.-++-.|++++|..-++-..+ .....+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456667777778888887777766 3454 34566667777788888888766665432 01122335566666653
No 392
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.80 E-value=68 Score=26.53 Aligned_cols=59 Identities=14% Similarity=0.163 Sum_probs=43.1
Q ss_pred HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 440 (636)
+..+-+..+....+-|++......+.||.+.+++..|.++|+-++.+. .+.-..|..++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~--g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKC--GAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhc--ccHHHHHHHHH
Confidence 445556666667788999999999999999999999999999887433 33333455444
No 393
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=54.19 E-value=50 Score=30.30 Aligned_cols=47 Identities=11% Similarity=0.033 Sum_probs=19.6
Q ss_pred HHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHH
Q 006672 305 ACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (636)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (636)
.+.+.+.+.+++.....-++.. |.|...-..|++.|+-.|+++.|..
T Consensus 10 eLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~ 56 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALA 56 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHH
Confidence 3334444444444444433332 3333333444444444444444433
No 394
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=54.14 E-value=2.5e+02 Score=28.46 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=18.5
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhc
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGET 357 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (636)
|..+.++-.+...+...|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455556666666666667766666665543
No 395
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=53.31 E-value=54 Score=27.27 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
+++.++|..+..+ .+...-+..|...+..+...|++.+|.++++
T Consensus 80 ~dp~~if~~L~~~--~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSK--GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4467777766665 3344566778888888888888888888875
No 396
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.01 E-value=2.9e+02 Score=28.87 Aligned_cols=177 Identities=11% Similarity=0.061 Sum_probs=100.5
Q ss_pred HHHHHHHHhhCCCCC--h--------hhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHH-------HHHHHHHH-H
Q 006672 246 LKKAGELFEQMPEKG--V--------VSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDF-------TVVSALSA-C 306 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~--~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~-------t~~~ll~~-~ 306 (636)
.|+|+...++.++.| . .+...++..-.-.|++.+|++-..+|.+. .-.|... ..-.++.. |
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 455555555665554 1 23333444445679999999999999863 1233311 11223333 3
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCch--hHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHH--------HHHHH--HH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTA--------MIWGL--AI 374 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------li~~~--~~ 374 (636)
...+.++.|..-|....+.--..|. ..-..+...|.+.|+.++-.++++.+..+|..++.+ ++.++ ..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~ 457 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK 457 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 4567788888888776654323333 333556778889999999999999888765444332 11121 24
Q ss_pred cCChHHHHHHHHHHhHcCCCCCH--H---HHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDG--T---VFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~--~---t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
.+++.+|...+++-.+..-.-|- - ....+-..+...|+..++.+...-
T Consensus 458 qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrp 510 (629)
T KOG2300|consen 458 QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRP 510 (629)
T ss_pred hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccch
Confidence 67888888888877663211111 1 111122234456666666655443
No 397
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.80 E-value=19 Score=29.97 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=25.0
Q ss_pred hCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 006672 106 ENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (636)
Q Consensus 106 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 139 (636)
..|.-..|..+|++|++.|-.||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446667899999999999988875 77777654
No 398
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=52.60 E-value=50 Score=22.59 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=20.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAI 403 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 403 (636)
+.-++.+.|++++|.+..+.+++ +.|+..-...|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 44566777777777777777777 66765443333
No 399
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=51.81 E-value=44 Score=25.14 Aligned_cols=46 Identities=17% Similarity=0.347 Sum_probs=29.5
Q ss_pred hcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
..|+.++|...|+...+.+.+-. |. + .......|++|.++.++|..
T Consensus 20 E~g~~e~Al~~Y~~gi~~l~eg~ai~~-~--------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 20 EWGDKEQALAHYRKGLRELEEGIAVPV-P--------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHcCCCC-C--------cccccHHHHHHHHHHHHHHH
Confidence 45788888888886665544321 21 1 23344578888888888875
No 400
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=51.70 E-value=1e+02 Score=24.81 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
.-|..|+.-|...|..++|++++.+..+
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3588899999999999999999999887
No 401
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=51.37 E-value=1.3e+02 Score=24.22 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=34.1
Q ss_pred ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHh
Q 006672 144 LLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFG 223 (636)
Q Consensus 144 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 223 (636)
..++|..|.+.+...+- ....+--+-+..+.+.|++++|+..=.... .||...|.+|.. .+.|-.+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~----~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHC----YPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS------GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCC----CccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 34555555555555432 222333333444556666666633322233 566666655443 24455555555554
Q ss_pred hCC
Q 006672 224 MMP 226 (636)
Q Consensus 224 ~m~ 226 (636)
++.
T Consensus 94 rla 96 (116)
T PF09477_consen 94 RLA 96 (116)
T ss_dssp HHC
T ss_pred HHH
Confidence 443
No 402
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=50.69 E-value=1.1e+02 Score=23.59 Aligned_cols=38 Identities=16% Similarity=0.079 Sum_probs=24.9
Q ss_pred hcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHH
Q 006672 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQA 381 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (636)
..|+.+.|.++++.+. +....|..++.++...|+.+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466667777777766 6666667777777666665544
No 403
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=50.26 E-value=3.1e+02 Score=28.33 Aligned_cols=27 Identities=11% Similarity=0.231 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPE 258 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 258 (636)
....+|+-|...|+..+..+.++.+..
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn~ 373 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLNL 373 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcCC
Confidence 345677888888888888887776643
No 404
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.89 E-value=4.5e+02 Score=30.14 Aligned_cols=27 Identities=11% Similarity=0.134 Sum_probs=24.3
Q ss_pred hHHHHHHHHHhCCCchHHHHHHHHhHH
Q 006672 96 IFNVLIRGLAENSHFQSCISHFVFMLR 122 (636)
Q Consensus 96 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 122 (636)
-|..|+.-|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 488899999999999999999998875
No 405
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.98 E-value=70 Score=28.94 Aligned_cols=31 Identities=13% Similarity=0.045 Sum_probs=18.4
Q ss_pred CCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
..|++..|..++.++...|+.++|.+..+++
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566666666666666666666665555533
No 406
>PRK10941 hypothetical protein; Provisional
Probab=47.15 E-value=2e+02 Score=27.72 Aligned_cols=57 Identities=11% Similarity=0.001 Sum_probs=26.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+.+-.+|.+.++++.|+...+.+.. +.|+.. -+.--.-.|.+.|.+..|..=++...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3344445555555555555555555 444422 22223333445555555554444444
No 407
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=46.56 E-value=2.3e+02 Score=27.32 Aligned_cols=29 Identities=3% Similarity=-0.067 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
...+..+..-|++.++.+.+.+...+..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~ 143 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMR 143 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 34666677777888888777777666543
No 408
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=46.53 E-value=1.6e+02 Score=31.15 Aligned_cols=57 Identities=16% Similarity=0.141 Sum_probs=31.5
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccCC--Chh---cHHHHHHHHHHcCChHHHHHHHHHHhHc
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKEK--DLL---TWTAMIWGLAIHGRYEQAIQYFKKMMYS 391 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 391 (636)
..|+.-|.+++++++|..++..|.=. ... +.+.+.+.+.+..-..+....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 34666788888888888888777632 122 2233333344443344444555555443
No 409
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=45.95 E-value=2.9e+02 Score=26.80 Aligned_cols=64 Identities=8% Similarity=0.103 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC-CCCCChhhHHHHHHHHHhcCChHHHHHHHhh
Q 006672 161 EYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK-NKSESVLLWNVLINGCSKIGYLRKAVELFGM 224 (636)
Q Consensus 161 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 224 (636)
.++..+....+..+++.+++..-.++++..... +...|...|...|......|+..-...+.++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 444555555666666666666666666554433 3344556666666666666665555555443
No 410
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=45.82 E-value=40 Score=32.58 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 302 (636)
.-||..|....+.||+++|+.++++..+.|+.--..||...
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34778899999999999999999999999876655555443
No 411
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.72 E-value=2.9e+02 Score=26.75 Aligned_cols=144 Identities=9% Similarity=-0.029 Sum_probs=73.8
Q ss_pred HHHHHHHHhhccCC-ChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc-----C--cHH
Q 006672 347 IEAASLVFGETKEK-DLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-----G--QVK 414 (636)
Q Consensus 347 ~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g--~~~ 414 (636)
...|...|....+. +......|...|.. ..+..+|..+|++.-+.|..+...+...+...+..- - +..
T Consensus 93 ~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~ 172 (292)
T COG0790 93 KTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDK 172 (292)
T ss_pred HHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHH
Confidence 44455555443332 22233333333333 226677777777777766554322222222233221 1 223
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC-----
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG----- 485 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g----- 485 (636)
.|...+.++-. .+ +......+..+|.. ..+.++|...|+++.+++ +......+. .+...|
T Consensus 173 ~A~~~~~~aa~-~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g------~~~a~~~~~-~~~~~g~g~~~ 241 (292)
T COG0790 173 KALYLYRKAAE-LG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG------DGAACYNLG-LMYLNGEGVKK 241 (292)
T ss_pred hHHHHHHHHHH-hc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC------CHHHHHHHH-HHHhcCCCchh
Confidence 67777777653 22 34444445555533 346778888888777542 244555555 555555
Q ss_pred ----------ChhHHHHHHHHHHhCC
Q 006672 486 ----------RWKDVARVRTLMQRRS 501 (636)
Q Consensus 486 ----------~~~~A~~~~~~m~~~g 501 (636)
+...|...+......|
T Consensus 242 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 242 AAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred hhhcccccCCCHHHHHHHHHHHHHcC
Confidence 5555666666655544
No 412
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=45.38 E-value=2.5e+02 Score=28.75 Aligned_cols=53 Identities=11% Similarity=0.066 Sum_probs=35.7
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCCHH--HHHHHHHHHH--hcCcHHHHHHHHHHhHh
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPDGT--VFLAILTACW--YSGQVKLALNFFDSMRF 425 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 425 (636)
+...+++..|.++|+++... +.++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34678888888888888876 555543 3444445554 35677888888887664
No 413
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.95 E-value=57 Score=23.12 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..-.++.+|...|++++|.+++++..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33445555555666666665555444
No 414
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.60 E-value=1e+02 Score=23.96 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=19.0
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
+..+....|+.++|.+.++++.+..-+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 4455667788888888887776655444
No 415
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.37 E-value=3.8e+02 Score=27.38 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=47.1
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC------chhHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH------PSSYV 475 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~------~~~~~ 475 (636)
++-..|+...-..++........+..+ ....|++++.|...+.++.|..++.+.. -|++ .....
T Consensus 178 ~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~------~pe~~snne~ARY~y 251 (493)
T KOG2581|consen 178 SYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV------YPEAASNNEWARYLY 251 (493)
T ss_pred HHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc------CccccccHHHHHHHH
Confidence 344455555555555544433333333 3344556666666666666666655221 1221 12334
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
-++.+.+-++++.+|.+.+-....+
T Consensus 252 Y~GrIkaiqldYssA~~~~~qa~rk 276 (493)
T KOG2581|consen 252 YLGRIKAIQLDYSSALEYFLQALRK 276 (493)
T ss_pred HHhhHHHhhcchhHHHHHHHHHHHh
Confidence 4566666667777777777666554
No 416
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=43.28 E-value=1.1e+02 Score=25.27 Aligned_cols=47 Identities=4% Similarity=-0.007 Sum_probs=37.0
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHh
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKS 158 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 158 (636)
+..+-++.+...++.|+.......|++|.+.+|+..|..+|+-++..
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44455666666778888888888999999999999999998877643
No 417
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.19 E-value=70 Score=33.91 Aligned_cols=111 Identities=14% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHhccCCCCCcchHHHHHH--H-HHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHH
Q 006672 80 DYALSIFDHFTPKNLHIFNVLIR--G-LAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIV 156 (636)
Q Consensus 80 ~~A~~~f~~~~~~~~~~~~~li~--~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 156 (636)
+.|-.+|-.|..++...|-+|=. . ....|+...|...+....-....-..+....|...+.+.|....|..++.+.+
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34444555555444443322211 1 12245555555555544332111122333334444444444444544444444
Q ss_pred HhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 157 KSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 157 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
... ...+.++..+.++|.-..+++.|++.|+...
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~ 703 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQAL 703 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHH
Confidence 433 3333444445555555555555555555444
No 418
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.17 E-value=84 Score=32.49 Aligned_cols=49 Identities=14% Similarity=0.125 Sum_probs=21.6
Q ss_pred HcCChHHHHHHHHHHhHcCCCCCHHHHHH-HHHHHHhcCcHHHHHHHHHHhH
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPDGTVFLA-ILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+.++.|+.++.+.++ +.||...|-. =..++.+.+++..|..=+...+
T Consensus 16 ~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred ccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 33445555555555555 4454332222 2234444445544444443333
No 419
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.55 E-value=4.1e+02 Score=27.55 Aligned_cols=152 Identities=15% Similarity=0.185 Sum_probs=78.0
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc---CCChhcHHHHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK---EKDLLTWTAMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li 369 (636)
..+......++..+ .|+...+..+++.+...+...+ .+...+++.... .++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444444444433 5777777777766553311111 222222222211 12223344555
Q ss_pred HHHHH---cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHh
Q 006672 370 WGLAI---HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSR 445 (636)
Q Consensus 370 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~ 445 (636)
+++.+ .++.+.|+..+.+|.+.|..|....-..+..++...|.-+ |. ...-.+..+++.+
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~----------------~~~~~~~~~~~~~~~~ 298 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLAD----------------PNALQVAVAAADAVER 298 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccC----------------HHHHHHHHHHHHHHHH
Confidence 55554 4789999999999999998887555444444444333211 11 1112233344555
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
.|..+.-.-+.+-+. .+.+.|++-.+|..+..+
T Consensus 299 ~g~pe~~~~l~~~~~--~l~~~pksn~~~~a~~~a 331 (413)
T PRK13342 299 IGMPEGRIALAQAVI--YLALAPKSNAAYTAINAA 331 (413)
T ss_pred hCCcHHHHHHHHHHH--HHHcCCCccHHHHHHHHH
Confidence 565544444444322 245677777777776544
No 420
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=42.20 E-value=3.8e+02 Score=27.15 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=35.6
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCcHHHHHHHHHH
Q 006672 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACA-KVGALEAGVRVHNYI 322 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~ 322 (636)
|..+.+.|.+.-|+++.+-+...+..-|+......|..|+ +.++++--.++.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 5667778888888888877777654446666666666664 445555555555543
No 421
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=42.02 E-value=48 Score=32.08 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=33.8
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAIL 404 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 404 (636)
.-|+..|..-.+.|++++|+.++++..+.|+.--..||...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 357788888899999999999999999988876666665544
No 422
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.51 E-value=5.4e+02 Score=28.61 Aligned_cols=70 Identities=11% Similarity=0.033 Sum_probs=32.9
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC
Q 006672 206 INGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGE 276 (636)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 276 (636)
+..+.+.+++...+..+.. ...+.........+....|+.++|......+-. ......+.++..+.+.|.
T Consensus 106 l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~ 178 (644)
T PRK11619 106 VNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGK 178 (644)
T ss_pred HHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCC
Confidence 3344456666666663322 233444444555556666665555444443311 113344444444444443
No 423
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=41.19 E-value=3.1e+02 Score=25.74 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL 312 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 312 (636)
....+..|.+.-++.-|-..++++.+| +.+-.++ --|.+..+..--.++.+-....+++-+...+..++ +...|+.
T Consensus 133 lRRtMEiyS~ttRFalaCN~s~KIiEP-IQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDM 208 (333)
T KOG0991|consen 133 LRRTMEIYSNTTRFALACNQSEKIIEP-IQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDM 208 (333)
T ss_pred HHHHHHHHcccchhhhhhcchhhhhhh-HHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchH
Confidence 334456666666666665555555544 1121121 12333333222223333333344444433333332 2344555
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
.+|...++.-.. | -.+-.+..+|+-..+|.+.....|+..+. .+++++|.+++.++-+.|
T Consensus 209 RQalNnLQst~~-g------------------~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lg 268 (333)
T KOG0991|consen 209 RQALNNLQSTVN-G------------------FGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLG 268 (333)
T ss_pred HHHHHHHHHHhc-c------------------ccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcC
Confidence 555444433221 1 01123455666666777777777777654 568999999999999999
Q ss_pred CCCCHHHHHHHHHHH
Q 006672 393 TEPDGTVFLAILTAC 407 (636)
Q Consensus 393 ~~p~~~t~~~ll~a~ 407 (636)
+.|... .+.+.+++
T Consensus 269 ysp~Di-i~~~FRv~ 282 (333)
T KOG0991|consen 269 YSPEDI-ITTLFRVV 282 (333)
T ss_pred CCHHHH-HHHHHHHH
Confidence 988643 23344443
No 424
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=40.90 E-value=1.5e+02 Score=32.04 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=25.9
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCC------ChHHHHHHHHHHHhcCCH
Q 006672 204 VLINGCSKIGYLRKAVELFGMMPKK------NVASWVSLIDGFMRKGDL 246 (636)
Q Consensus 204 ~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~ 246 (636)
+|..+|..+|++..+.++++..... -...+|..|.-..+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 6677777777777777776665521 123455555555555543
No 425
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.66 E-value=95 Score=23.70 Aligned_cols=62 Identities=10% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHH
Q 006672 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSC 113 (636)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 113 (636)
..++..+++.|+- +....-...+...+.+.|.++++.++.++..+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4467777777642 2223333445566788899999999999999999999888887765444
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.34 E-value=66 Score=22.80 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
--..++.++...|++++|.++.+.+..
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344556666677777777776666653
No 427
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.30 E-value=1.1e+02 Score=20.24 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=20.6
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006672 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304 (636)
Q Consensus 271 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 304 (636)
..+.|-.+++..++++|.+.|+.-+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3455666666666666766666666655555443
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.31 E-value=3.5e+02 Score=25.50 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=37.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCcHHHHHHHHHHHH
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK-VGALEAGVRVHNYISC 324 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~ 324 (636)
.++..+-+.|+++++...++++...+...+..-.+.+-.+|-. .|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 3567778889999999999999988766666655555555532 2344455555555443
No 429
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.80 E-value=3.4e+02 Score=25.32 Aligned_cols=94 Identities=7% Similarity=0.075 Sum_probs=54.4
Q ss_pred hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHHHHHHHH
Q 006672 176 QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--NVASWVSLIDGFMRKGDLKKAGELF 253 (636)
Q Consensus 176 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~~A~~~~ 253 (636)
..+++++|.+.+-.-. +.|+- ...++.++...|+.+.|+.+++.+..+ +......++.. ..++.+.+|...-
T Consensus 90 D~~~~~~A~~~L~~ps---~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 90 DHGDFEEALELLSHPS---LIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred ChHhHHHHHHHhCCCC---CCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 4466777776663221 12221 123777777788888888888877643 22233333333 5667888888777
Q ss_pred hhCCCCC-hhhHHHHHHHHHhCC
Q 006672 254 EQMPEKG-VVSWTAMINGFSQNG 275 (636)
Q Consensus 254 ~~~~~~~-~~~~~~li~~~~~~g 275 (636)
+...++. ...|..++..+....
T Consensus 164 R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 164 RSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HhCchhhhHHHHHHHHHHHHHHh
Confidence 7766543 345666666555433
No 430
>PF15161 Neuropep_like: Neuropeptide-like
Probab=37.66 E-value=15 Score=24.89 Aligned_cols=17 Identities=24% Similarity=0.681 Sum_probs=12.2
Q ss_pred eccccccchhhHHHHhhh
Q 006672 592 KKLTICGDCHSLMKYASK 609 (636)
Q Consensus 592 ~nl~~~~~~h~~~k~~s~ 609 (636)
-.-|-|.|||.+- |+.+
T Consensus 11 aesRPCVDCHAFe-fmqR 27 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQR 27 (65)
T ss_pred CCCCCchhhHHHH-HHHH
Confidence 4568899999765 5543
No 431
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.44 E-value=2.5e+02 Score=29.11 Aligned_cols=194 Identities=11% Similarity=0.087 Sum_probs=98.5
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-------------ChhcHHHHHHHH-----
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------------DLLTWTAMIWGL----- 372 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------~~~~~~~li~~~----- 372 (636)
.+++-.++++.+.+.| .+| +...-++.|.+.+++++|...+++-.+. .+.....++...
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4556666666666554 222 4455678888888888888887765431 122223333332
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHh---H---hhcCCCCChhHHHHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWYSGQVKLALNFFDSM---R---FDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m---~---~~~~~~p~~~~~~~l~~~~ 443 (636)
.++|. ..+..+++-+...|+... .++|+. -|++.=-++++...|+.+ . ++.|+..+.+.+.+|-..+
T Consensus 146 vRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL 221 (480)
T TIGR01503 146 IRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL 221 (480)
T ss_pred ccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc
Confidence 23343 356677777777776543 234432 344444555555555422 2 1246665655554332111
Q ss_pred HhcCCchHHHHHHHHH--HHHHhccCCCCchhHHHHHHHHHHcCChh---HHHHHHHHHHhCCCccCCeeeEEEECCEEE
Q 006672 444 SRVGQDSQGYQNSQNS--FTKLLQLKPKHPSSYVLLSNIYAAEGRWK---DVARVRTLMQRRSIKKDPGWSYIEVNGHVH 518 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~--~~~~~~l~p~~~~~~~~l~~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~ 518 (636)
.= =.+.-|..+++-. .+++++ ++.-.|.+.|+.. .|++.++++...- -+.-|+.-+++...+|
T Consensus 222 vP-Psisiav~ilE~Lla~eqGVk----------sisvgy~Q~Gn~~QDiaai~aL~~l~~eY-l~~~g~~Dv~i~tV~h 289 (480)
T TIGR01503 222 VP-PSISNAIGIIEGLLAAEQGVK----------NITVGYGQVGNLTQDIAALRALEEQTNEY-LKAYGYNDVFVTTVFH 289 (480)
T ss_pred cC-hHHHHHHHHHHHHHHHHcCCe----------EEEeccccCCChHHHHHHHHHHHHHHHHH-HHhCCCCceEEEEEee
Confidence 00 0011233333311 112111 1233566777654 3566666554432 2445666677888888
Q ss_pred EecCC
Q 006672 519 RFEAG 523 (636)
Q Consensus 519 ~~~~~ 523 (636)
.|+-+
T Consensus 290 qwMG~ 294 (480)
T TIGR01503 290 QWMGG 294 (480)
T ss_pred eccCC
Confidence 88765
No 432
>PRK14700 recombination factor protein RarA; Provisional
Probab=37.05 E-value=4.1e+02 Score=25.99 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=38.4
Q ss_pred hHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006672 263 SWTAMINGFSQ---NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (636)
Q Consensus 263 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 311 (636)
.+-.+|+++.+ ..+++.|+-++.+|++.|-.|....-..++.++-.-|.
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 33445777754 57899999999999999988888887778777777664
No 433
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=37.04 E-value=2.4e+02 Score=23.28 Aligned_cols=63 Identities=11% Similarity=0.163 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHH---HHhccCCCCchhHH----HHHHHHHHcCChhHHHHHHHHH
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFT---KLLQLKPKHPSSYV----LLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~l~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.+..|..++.+.|++++++...+++.. +-=+++.+.-..|. +-+.++...|+.++|...|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 345666677777777776665553332 11244444444444 3345677789999999988864
No 434
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.89 E-value=1.3e+02 Score=20.04 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=19.6
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILT 405 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 405 (636)
.+.|-..++..++++|.+.|+.-++..+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345556666666666666666666555555443
No 435
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=36.85 E-value=6.8e+02 Score=28.49 Aligned_cols=337 Identities=11% Similarity=0.053 Sum_probs=163.1
Q ss_pred hHHHHHHHHHHHHhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCCh-hhHHHHHHHHHhcCChH
Q 006672 145 LSLGRGLHCLIVKSGVE-------YDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESV-LLWNVLINGCSKIGYLR 216 (636)
Q Consensus 145 ~~~a~~~~~~~~~~g~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~ 216 (636)
.+.+..+++.+...|+. +.-+-|..|..-+.+. -.+.+..++. .........+...|.++
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~------------r~~~~~~~~~~~lH~~Aa~w~~~~g~~~ 364 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQ------------RLQRELAARLKELHRAAAEWFAEHGLPS 364 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHh------------hhccccCCchhHHHHHHHHHHHhCCChH
Confidence 34566777777777742 2233455444433322 1112112332 22233344566666666
Q ss_pred HHHHHHhhCCCCChHHHHHHHHHH----HhcCCHHHHHHHHhhCCCCChhhHHHH----HHHHHhCCChHHHHHHHHHHH
Q 006672 217 KAVELFGMMPKKNVASWVSLIDGF----MRKGDLKKAGELFEQMPEKGVVSWTAM----INGFSQNGEAEKALAMFFQML 288 (636)
Q Consensus 217 ~A~~~~~~m~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~ 288 (636)
+|++---... |+.....++.-+ ...+++.--....+.++.+-......+ +-......++++|..+..+..
T Consensus 365 eAI~hAlaA~--d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~ 442 (894)
T COG2909 365 EAIDHALAAG--DPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLE 442 (894)
T ss_pred HHHHHHHhCC--CHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 6666544443 333333333322 334556666666666654322221111 123345677788877777765
Q ss_pred HCCCC----CCHH---HHHHHHH-HHHhcCCcHHHHHHHHHHHHc----CCCCchhHHHHHhhHHhhcCCHHHHHHHHhh
Q 006672 289 DAGVR----ANDF---TVVSALS-ACAKVGALEAGVRVHNYISCN----DFGLKGAIGTALVDMYAKCGNIEAASLVFGE 356 (636)
Q Consensus 289 ~~g~~----p~~~---t~~~ll~-~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (636)
..-.. +... .+..+-. .....|+++.+.++-+..... -..+....+..+..+..-.|+++.|..+..+
T Consensus 443 ~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~ 522 (894)
T COG2909 443 HFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQ 522 (894)
T ss_pred HHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHH
Confidence 43111 1111 2222222 123456777777776665542 2334556667777777778888888877765
Q ss_pred ccC----CChh---cHHHHHHH--HHHcCCh--HHHHHHHHHHhHc--CCCCC----HHHHHHHHHHHHhc-CcHHHHHH
Q 006672 357 TKE----KDLL---TWTAMIWG--LAIHGRY--EQAIQYFKKMMYS--GTEPD----GTVFLAILTACWYS-GQVKLALN 418 (636)
Q Consensus 357 ~~~----~~~~---~~~~li~~--~~~~g~~--~~A~~~~~~m~~~--g~~p~----~~t~~~ll~a~~~~-g~~~~a~~ 418 (636)
..+ -++. .|..+..+ +..+|+. .+.+..|...... +-+|- ..+...++.++.+. +...++..
T Consensus 523 a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~ 602 (894)
T COG2909 523 AEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARL 602 (894)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhh
Confidence 544 2333 34444332 3445632 2233333333221 11121 23455555555442 22222322
Q ss_pred HHHHhHhhcCCCCChhHH--HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC-CchhHHHHHH--HHHHcCChhHHHHH
Q 006672 419 FFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK-HPSSYVLLSN--IYAAEGRWKDVARV 493 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~-~~~~~~~l~~--~~~~~g~~~~A~~~ 493 (636)
-++--. .+...|-...+ .+|+.++...|++++|...++++..-...-.|. +..+-...+. .....|+.+++...
T Consensus 603 ~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~ 681 (894)
T COG2909 603 GIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEW 681 (894)
T ss_pred cchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHH
Confidence 222222 12223322222 367788889999999999998776554333221 1111111222 23346777777666
Q ss_pred HHH
Q 006672 494 RTL 496 (636)
Q Consensus 494 ~~~ 496 (636)
..+
T Consensus 682 l~~ 684 (894)
T COG2909 682 LLK 684 (894)
T ss_pred HHh
Confidence 554
No 436
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.87 E-value=7.3e+02 Score=28.55 Aligned_cols=28 Identities=25% Similarity=0.512 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA 290 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 290 (636)
-|..|+..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 5888999999999999999999998763
No 437
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.87 E-value=2.6e+02 Score=23.27 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=19.4
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
.+.++|..|...|+--. +.-|......+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55555555555444433 2234444444444555555555544
No 438
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.70 E-value=7.1e+02 Score=28.34 Aligned_cols=169 Identities=15% Similarity=0.154 Sum_probs=86.8
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCh--HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 207 NGCSKIGYLRKAVELFGMMPKKNV--ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 207 ~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
..|...|++++|++.-+.- |+. .++..-.+.|...+++..|-+++-++ ..++..+.--+....+.+ ++..|
T Consensus 366 k~yLd~g~y~kAL~~ar~~--p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR--PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHhcchHHHHHHhccCC--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHH
Confidence 4577889999998886654 232 34555567777888888888888887 334555555555666655 44444
Q ss_pred HHHHHCCCCCCHHHHHHHHH-----HH-HhcCCcH----HHHHHHHH--------HHH-cCCCCchhHHHHHhhHHhhcC
Q 006672 285 FQMLDAGVRANDFTVVSALS-----AC-AKVGALE----AGVRVHNY--------ISC-NDFGLKGAIGTALVDMYAKCG 345 (636)
Q Consensus 285 ~~m~~~g~~p~~~t~~~ll~-----~~-~~~~~~~----~a~~~~~~--------~~~-~~~~~~~~~~~~li~~~~~~g 345 (636)
-.=+-..++|...+-..++. .+ .+.++++ ++.+-++. +.+ .....+.....+........|
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 22222234555444333222 22 2223222 22221111 110 011111222233333444455
Q ss_pred CHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHH
Q 006672 346 NIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (636)
Q Consensus 346 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (636)
+.+....+-.-|. -|..++.-+.++|.+++|++++..
T Consensus 519 ~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~ 555 (911)
T KOG2034|consen 519 RQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLN 555 (911)
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555544433332 245566667777888888777654
No 439
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=35.46 E-value=38 Score=28.31 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=23.7
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
-..|.-..|-.+|++|++.|-+||. ++.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3445666788899999999988885 45555543
No 440
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.39 E-value=4.4e+02 Score=29.88 Aligned_cols=134 Identities=14% Similarity=0.181 Sum_probs=82.4
Q ss_pred hHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHH
Q 006672 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
.....||+++.|.+.-..+. +..+|..|+..-..+|+.+-|+..|++... |..|--.|.-.|+.++-.+
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~K 719 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSK 719 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHH
Confidence 34567899999988776665 556899999999999999999999887654 2233334556788887766
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
+.+.... +-|.... .+..+ -.|+.++-.++++... .-+-.|.+ -...|.-++|.++.++..
T Consensus 720 m~~iae~----r~D~~~~-~qnal--Yl~dv~ervkIl~n~g--------~~~laylt----a~~~G~~~~ae~l~ee~~ 780 (1202)
T KOG0292|consen 720 MMKIAEI----RNDATGQ-FQNAL--YLGDVKERVKILENGG--------QLPLAYLT----AAAHGLEDQAEKLGEELE 780 (1202)
T ss_pred HHHHHHh----hhhhHHH-HHHHH--HhccHHHHHHHHHhcC--------cccHHHHH----HhhcCcHHHHHHHHHhhc
Confidence 6655432 2222111 01111 2466666666555221 11222221 234677788888888887
Q ss_pred hCCC
Q 006672 499 RRSI 502 (636)
Q Consensus 499 ~~g~ 502 (636)
.++.
T Consensus 781 ~~~~ 784 (1202)
T KOG0292|consen 781 KQVP 784 (1202)
T ss_pred cccC
Confidence 7554
No 441
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=35.05 E-value=81 Score=17.92 Aligned_cols=27 Identities=7% Similarity=0.095 Sum_probs=13.8
Q ss_pred CchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+.+.|..+|+++. ...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l----~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERAL----EKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHH----HHCCCChHHHHHHH
Confidence 4455555555444 23455555555544
No 442
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=34.89 E-value=70 Score=19.78 Aligned_cols=23 Identities=9% Similarity=0.158 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHH
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
.+..++..+...|++++|..+++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 45677888899999999999944
No 443
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=34.78 E-value=7.6e+02 Score=28.44 Aligned_cols=43 Identities=16% Similarity=0.053 Sum_probs=23.0
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
-....|++..|.+++.++.++.+-.++..+|..+++++...|.
T Consensus 1240 ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw 1282 (1304)
T KOG1114|consen 1240 HAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGW 1282 (1304)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCc
Confidence 3344555666666666655555555555555555555544443
No 444
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=34.55 E-value=4.4e+02 Score=25.61 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=41.0
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 393 TEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 393 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
-.++..+...++..++..+++..-.++++.-....+..-|...|...++.....|+..-...+++
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 45556666677777777777777777777665422344456666777777666666655555544
No 445
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=34.03 E-value=95 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.407 Sum_probs=17.7
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 006672 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (636)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (636)
.+.+.|.++++.++.++..+|.....++...|..
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 3445555555555555555555555555544433
No 446
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=34.01 E-value=4.5e+02 Score=25.56 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
......++..|..++|.++.+.....+.
T Consensus 202 l~yA~~Lae~G~~~~A~kY~d~i~~~lk 229 (284)
T PF12931_consen 202 LQYASLLAEQGLLSEALKYCDAIASSLK 229 (284)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4556778889999999999986665443
No 447
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=34.00 E-value=4.8e+02 Score=25.89 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
+.-+.++++.++.+ +-+.......|..+.+..+.+...+.++.++... +.+..+|...++..
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHH
Confidence 44555666665552 3344445556666666666666666666666543 33555555555443
No 448
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.64 E-value=5.1e+02 Score=27.49 Aligned_cols=35 Identities=9% Similarity=0.106 Sum_probs=25.7
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
...++++.|+.++.+|...|..|....-..+..++
T Consensus 254 i~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~ 288 (472)
T PRK14962 254 IFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLV 288 (472)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45689999999999999998877766444444333
No 449
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=33.63 E-value=4.5e+02 Score=26.12 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccC---CChhcHHHHHHHHH-H-----cCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHH
Q 006672 347 IEAASLVFGETKE---KDLLTWTAMIWGLA-I-----HGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLA 416 (636)
Q Consensus 347 ~~~A~~~~~~~~~---~~~~~~~~li~~~~-~-----~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a 416 (636)
++++..++++... +......+.|.++- . .-++.....+|+-+.. +.|+++ +.|-.+ +.....-.+.+
T Consensus 272 I~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~--~apSPvV~LNRAV-Ala~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQ--AAPSPVVTLNRAV-ALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHH--hCCCCeEeehHHH-HHHHhhhHHhH
Confidence 3444555544332 34444444444432 1 2356666677777776 566654 444433 44445556677
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
+...+.+..+.++.--...+..-.+++.+.|+.++|..-|+++.
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi 392 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAI 392 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 77777665432222223334566788889999999998888665
No 450
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.37 E-value=69 Score=29.66 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=39.3
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..+.|+.+.|.+++.++ +++.|+....|..++..-.++|+.+.|.+.+++..+..
T Consensus 5 ~~~~~D~~aaaely~qa----l~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 5 LAESGDAEAAAELYNQA----LELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hcccCChHHHHHHHHHH----hhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44566677777776644 46677777778888777777888888887777776644
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=33.20 E-value=2.5e+02 Score=28.93 Aligned_cols=57 Identities=18% Similarity=0.181 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCC-----------CCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMP-----------EKGVVSWTAMINGFSQNGEAEKALAMFFQML 288 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 288 (636)
+...|+..++-.||+..|+++++.+. .-.+.++--+.-+|...+++.+|.+.|....
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777777777776653 2224567777888888899999998887765
No 452
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=33.10 E-value=1.3e+02 Score=28.63 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=10.1
Q ss_pred HHHHHhcCcHHHHHHHHHHh
Q 006672 404 LTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m 423 (636)
..-|.+.|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 34444555555555555544
No 453
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.08 E-value=4.2e+02 Score=24.97 Aligned_cols=97 Identities=6% Similarity=-0.084 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHhhccC--CCh-hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHH-HHHHHHHhcCcHHHHHHH
Q 006672 344 CGNIEAASLVFGETKE--KDL-LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL-AILTACWYSGQVKLALNF 419 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a~~~~g~~~~a~~~ 419 (636)
..+++.|..-|.+... |++ .-|+.-+-++.+..+++.+..=-++.++ +.||.+--. .+..+......+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 3445555555544432 433 3344555556666666666665555555 556544222 223344455556666666
Q ss_pred HHHhH---hhcCCCCChhHHHHHHHH
Q 006672 420 FDSMR---FDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 420 ~~~m~---~~~~~~p~~~~~~~l~~~ 442 (636)
+++.. +...+.|.......|.++
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 55542 122333444445544443
No 454
>PRK13342 recombination factor protein RarA; Reviewed
Probab=33.04 E-value=5.7e+02 Score=26.46 Aligned_cols=48 Identities=19% Similarity=0.279 Sum_probs=34.2
Q ss_pred hHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006672 263 SWTAMINGFSQ---NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG 310 (636)
Q Consensus 263 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~ 310 (636)
.+..+++++.+ .++++.|+.++..|.+.|..|....-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34455666555 5789999999999999998887666555555554444
No 455
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.95 E-value=5.5e+02 Score=26.21 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=34.3
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCCCHHH----HHHHHHHHH--hcCcHHHHHHHHHH
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEPDGTV----FLAILTACW--YSGQVKLALNFFDS 422 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~a~~--~~g~~~~a~~~~~~ 422 (636)
.+.+.+++..|.++|+++....+.|.... +..+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 45567888899999999888755555433 333334443 34577788888874
No 456
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.90 E-value=3.8e+02 Score=24.30 Aligned_cols=55 Identities=18% Similarity=0.221 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCC--------------CCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDF--------------GLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
+++-.|-+.-++.+++.+++.+.+..+ .+.-.+.|.-...+.++|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 455566667777777777776654322 1222344555555666666666666555
No 457
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.80 E-value=5.3e+02 Score=25.98 Aligned_cols=56 Identities=7% Similarity=0.027 Sum_probs=29.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCcHHHHHHHHHHHHcC
Q 006672 271 FSQNGEAEKALAMFFQMLDAGVRANDFTVVSALS----ACAKVGALEAGVRVHNYISCND 326 (636)
Q Consensus 271 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~----~~~~~~~~~~a~~~~~~~~~~~ 326 (636)
+.+.++..-|......|...++.-=..||.++=- .....+..+++.+..-+|.+.|
T Consensus 287 F~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 287 FTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 4455666666666666655554444445554422 2234455556655555555543
No 458
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=32.26 E-value=28 Score=18.20 Aligned_cols=14 Identities=14% Similarity=0.346 Sum_probs=10.1
Q ss_pred cccchhhHHHHhhh
Q 006672 596 ICGDCHSLMKYASK 609 (636)
Q Consensus 596 ~~~~~h~~~k~~s~ 609 (636)
+-...|+++|+||.
T Consensus 8 v~qglhe~ikli~n 21 (23)
T PF08225_consen 8 VFQGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHHHhc
Confidence 34567888888874
No 459
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=31.95 E-value=7.3e+02 Score=27.35 Aligned_cols=435 Identities=12% Similarity=0.082 Sum_probs=218.1
Q ss_pred CCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHH-hCCCchHHHHHHHHhHHCCCCCCccc-----HH
Q 006672 60 FASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLA-ENSHFQSCISHFVFMLRLSVRPNRLT-----YP 133 (636)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~t-----~~ 133 (636)
..+...|..||.+-.+| ++.+.+-+.--+..+..++-.+...+. ...+++.|...+.+.....-+++-.- -.
T Consensus 27 ~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ 104 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQF 104 (608)
T ss_pred hhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 45667788888876554 222222111111225566777777776 57899999999998765433333221 12
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhCCC----CChhHHHHH-HHHHHhcCChHHHHHHHhhCCCCC---CCCChhhHHHH
Q 006672 134 FVSKSVASLSLLSLGRGLHCLIVKSGVE----YDAFVRVHL-ADMYVQLGKTRGAFKVFDETPEKN---KSESVLLWNVL 205 (636)
Q Consensus 134 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~~~l 205 (636)
.+++.+.+.+... |....+..++.--. +-...+.-+ +..+...++...|.+.++.+...- ..|-+..+-.+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3344455555444 88888887764211 112233333 333333489999999998765322 14444555555
Q ss_pred HHHHH--hcCChHHHHHHHhhCC-------------CCChHHHHHHHHHH--HhcCCHHHHHHHHhhCC-------CC--
Q 006672 206 INGCS--KIGYLRKAVELFGMMP-------------KKNVASWVSLIDGF--MRKGDLKKAGELFEQMP-------EK-- 259 (636)
Q Consensus 206 i~~~~--~~g~~~~A~~~~~~m~-------------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~-------~~-- 259 (636)
+.+.. +.+..+++++.++++. .|-..+|..+++.+ ...|+++.+...++++. ..
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~ 263 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPS 263 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCcc
Confidence 55543 4565667777766552 12345666666554 45677666655544332 11
Q ss_pred -------------------------ChhhH---------HHHHH--HHHhCCChHHHHHHHHH-------HH-HCCCCCC
Q 006672 260 -------------------------GVVSW---------TAMIN--GFSQNGEAEKALAMFFQ-------ML-DAGVRAN 295 (636)
Q Consensus 260 -------------------------~~~~~---------~~li~--~~~~~g~~~~A~~l~~~-------m~-~~g~~p~ 295 (636)
.+..| .-+++ .+...+..++|.+.+++ .. .....|.
T Consensus 264 w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~ 343 (608)
T PF10345_consen 264 WPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS 343 (608)
T ss_pred CCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC
Confidence 01111 11122 22334444455555544 44 1111111
Q ss_pred --------HHHHHHHHHH---------HHhcCCcHHHHHHHHHHHHcC--CCC------chhHHHHHhhHHhhcCCHHHH
Q 006672 296 --------DFTVVSALSA---------CAKVGALEAGVRVHNYISCND--FGL------KGAIGTALVDMYAKCGNIEAA 350 (636)
Q Consensus 296 --------~~t~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~--~~~------~~~~~~~li~~~~~~g~~~~A 350 (636)
...+...+.. ..-.+++..+....+.+.+.. .++ .+.++....-.+-..|+++.|
T Consensus 344 ~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A 423 (608)
T PF10345_consen 344 ESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAA 423 (608)
T ss_pred cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHH
Confidence 1122222221 234678888998888887532 111 122222233334557999999
Q ss_pred HHHHh--------hccCC----ChhcH---HHHH-HHHHHcCChHH--HHHHHHHHhHc-CCCCCH--HHHHHH-HHHHH
Q 006672 351 SLVFG--------ETKEK----DLLTW---TAMI-WGLAIHGRYEQ--AIQYFKKMMYS-GTEPDG--TVFLAI-LTACW 408 (636)
Q Consensus 351 ~~~~~--------~~~~~----~~~~~---~~li-~~~~~~g~~~~--A~~~~~~m~~~-g~~p~~--~t~~~l-l~a~~ 408 (636)
...|. ..... +...+ |..+ .-+-......+ +.++++.+... .-.|+. .++..+ +.++.
T Consensus 424 ~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~ 503 (608)
T PF10345_consen 424 LYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYN 503 (608)
T ss_pred HHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHh
Confidence 99997 22221 12121 2111 11122222333 67777766542 223332 233333 33333
Q ss_pred hcC--cHHHHHHHHHHhHhhc-CCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC-CchhHH-----
Q 006672 409 YSG--QVKLALNFFDSMRFDY-FIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK-HPSSYV----- 475 (636)
Q Consensus 409 ~~g--~~~~a~~~~~~m~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~-~~~~~~----- 475 (636)
..- ...++...+....+.. .-..+ ...++.|...+. .|+..|..+....+...+.+. |+ ....|.
T Consensus 504 ~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~-~d~~~~LW~~v~~~ 581 (608)
T PF10345_consen 504 TFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKS-SDYSDQLWHLVASG 581 (608)
T ss_pred hCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHH
Confidence 221 2235555555444333 11222 222333334444 688888877777644433332 33 234453
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+...|...|+.++|.....+...
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH
Confidence 444557788999999998877643
No 460
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.24 E-value=5.9e+02 Score=26.05 Aligned_cols=55 Identities=4% Similarity=-0.072 Sum_probs=35.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHH--hcCCcHHHHHHHHHHHHc
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRANDF--TVVSALSACA--KVGALEAGVRVHNYISCN 325 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 325 (636)
.+.+.+++..|.++|.++... ++++.. .+..+..+|. ..-++++|.+.++...+.
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 444778888888888888876 555544 3444444544 344667777777766643
No 461
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=30.93 E-value=9.3e+02 Score=28.24 Aligned_cols=21 Identities=19% Similarity=0.066 Sum_probs=12.7
Q ss_pred HHHHHhcCChHHHHHHHhhCC
Q 006672 206 INGCSKIGYLRKAVELFGMMP 226 (636)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~ 226 (636)
+..+...+++.+|..+.++-+
T Consensus 701 ir~~Ld~~~Y~~Af~~~RkhR 721 (928)
T PF04762_consen 701 IRKLLDAKDYKEAFELCRKHR 721 (928)
T ss_pred HHHHHhhccHHHHHHHHHHhc
Confidence 444556666777766665544
No 462
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.79 E-value=1.4e+02 Score=18.75 Aligned_cols=25 Identities=4% Similarity=0.022 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
|..|++.-...+++++|.+-|+++.
T Consensus 4 ~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 4 YDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444444455555554444433
No 463
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=30.24 E-value=2.6e+02 Score=23.92 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=34.3
Q ss_pred HHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006672 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG 178 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 178 (636)
..+.+.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 10 ~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 10 ERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3445566655443 23456666666666777788887777765554444333345555554
No 464
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=29.67 E-value=99 Score=29.95 Aligned_cols=50 Identities=10% Similarity=0.156 Sum_probs=28.7
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.+.|+.++|..+|+ .++.+.|.++.+..-++.......+.-+|..++-+.
T Consensus 127 ~~~Gk~ekA~~lfe----HAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFE----HALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HhccchHHHHHHHH----HHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 35566666666665 334566666666666655555555555555555433
No 465
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=29.35 E-value=1.6e+02 Score=22.74 Aligned_cols=58 Identities=10% Similarity=0.244 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCC
Q 006672 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSH 109 (636)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 109 (636)
..+...+.+.|+-.+ ...-...+...+.+.+.++++.++.++..+|..+..++-..+.
T Consensus 23 ~~v~~~L~~~gvlt~----~~~~~I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 23 DELLIHLLQKDILTD----SMAESIMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHcCCCCH----HHHHHHHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 346666666664322 2222333455677888888888888888888888888866554
No 466
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=29.32 E-value=3.3e+02 Score=26.84 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=9.5
Q ss_pred HhcCCcHHHHHHHHHHH
Q 006672 307 AKVGALEAGVRVHNYIS 323 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~ 323 (636)
.+.|++.+|.+.+..+.
T Consensus 286 RklGrlrEA~K~~RDL~ 302 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLM 302 (556)
T ss_pred HHhhhHHHHHHHHHHHh
Confidence 34566666666555544
No 467
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.52 E-value=5.4e+02 Score=24.80 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=26.0
Q ss_pred CHHHHHHHHhhCCCCC-hhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCC
Q 006672 245 DLKKAGELFEQMPEKG-VVSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~~-~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p 294 (636)
+...|..+|....+.+ ......|...|.. ..+..+|..+|++..+.|..+
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE 146 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh
Confidence 4555666665444433 2233334444433 226667777777776666443
No 468
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=28.39 E-value=6.7e+02 Score=25.79 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=38.9
Q ss_pred CChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006672 259 KGVVSWTAMINGFSQ---NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA 311 (636)
Q Consensus 259 ~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 311 (636)
++-..+..+|+++.+ ..+++.|+-++.+|.+.|-.|-...-..+.-++-.-|.
T Consensus 244 k~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGl 299 (436)
T COG2256 244 KDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGL 299 (436)
T ss_pred CCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC
Confidence 344455567777755 57899999999999999977877766666666665553
No 469
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.16 E-value=2.7e+02 Score=28.68 Aligned_cols=55 Identities=11% Similarity=0.114 Sum_probs=38.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhhCC-----------CCChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 202 WNVLINGCSKIGYLRKAVELFGMMP-----------KKNVASWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~~~~m~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
...|++.++-.||+..|+++++.+. .-.+.++--+.-+|.-.+++.+|.+.|..+
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777776665 123345666777888889999999998765
No 470
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=27.83 E-value=6.2e+02 Score=25.23 Aligned_cols=88 Identities=7% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH--HHHHHHHHcCChhHHHHH
Q 006672 417 LNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV--LLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~--~l~~~~~~~g~~~~A~~~ 493 (636)
.+++.....++..+.+ ...-..++....+.++.++|.++.+++.++..+.+-+++..|. ..++++...|+.+++.+.
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ 137 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKL 137 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHHHHh-----CCCcc
Q 006672 494 RTLMQR-----RSIKK 504 (636)
Q Consensus 494 ~~~m~~-----~g~~~ 504 (636)
+...++ -|+.+
T Consensus 138 ldd~~~~ld~~~~v~~ 153 (380)
T KOG2908|consen 138 LDDLKSMLDSLDGVTS 153 (380)
T ss_pred HHHHHHHHhcccCCCh
No 471
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.76 E-value=1.1e+03 Score=28.04 Aligned_cols=158 Identities=17% Similarity=0.070 Sum_probs=0.0
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccCC-------------------------------C-hhcHHHHHHHHHHcCC
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKEK-------------------------------D-LLTWTAMIWGLAIHGR 377 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------------------~-~~~~~~li~~~~~~g~ 377 (636)
+...-..+..+|..+|...+|.+.|.+.... . ..-|-..+..+-+++.
T Consensus 919 k~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 919 KPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred HHHHHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Q ss_pred hHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch---
Q 006672 378 YEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS--- 450 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~--- 450 (636)
.+.+.++-..+++. +.|+ ..+++.+.+-....|.+-+|...+-+--. .+-.......++-.+..+|.++
T Consensus 999 ~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npd---serrrdcLRqlvivLfecg~l~~L~ 1074 (1480)
T KOG4521|consen 999 AEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPD---SERRRDCLRQLVIVLFECGELEALA 1074 (1480)
T ss_pred HHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHhccchHHHh
Q ss_pred ---------HHHH-HHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 451 ---------QGYQ-NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 451 ---------~A~~-~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
+... +++.+.+...-+.|+ .|..|-.-+...++|.+|.-+.
T Consensus 1075 ~fpfigl~~eve~~l~esaaRs~~~mk~n---yYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1075 TFPFIGLEQEVEDFLRESAARSSPSMKKN---YYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred hCCccchHHHHHHHHHHHHhhcCcccccc---HHHHHHHHHHhhcchhHHHHHH
No 472
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=27.68 E-value=2.1e+02 Score=22.89 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=43.8
Q ss_pred hhhhhhhhHHHHHHHhccCCCCCCcEEEeeccccccchhhHHHHhhhhcCceEEEec
Q 006672 563 EEALGCHSEKLALAFGLIQTTPGTTIKIVKKLTICGDCHSLMKYASKISQREIVLRD 619 (636)
Q Consensus 563 ~~~~~~hs~~la~~~~~~~~~~~~~~~i~~nl~~~~~~h~~~k~~s~~~~~~~~~~d 619 (636)
+..|..|.|.-++--=-.+..+|..+.|---++-|..|..+|.-.+.-.+-.|+-++
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w 100 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTW 100 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEec
Confidence 344667777766543333344588888888899999999999999999999998876
No 473
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=27.47 E-value=8.3e+02 Score=26.59 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 230 VASWVSLIDGFMRKGDLKKAGELFEQMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
...+..|+..+... +.++-.++++++.. . ...|..++++....|-.....-+.+.+..
T Consensus 310 ~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~ 368 (574)
T smart00638 310 AAKFLRLVRLLRTL-SEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKN 368 (574)
T ss_pred HHHHHHHHHHHHhC-CHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 33455555544333 34555555555443 2 45677777777777765544444444443
No 474
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=27.37 E-value=4.6e+02 Score=23.58 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=10.3
Q ss_pred HHHHHhcCCchHHHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~ 457 (636)
+-.|.+.|.+++|.++++
T Consensus 118 V~VCm~~g~Fk~A~eiLk 135 (200)
T cd00280 118 VAVCMENGEFKKAEEVLK 135 (200)
T ss_pred HHHHHhcCchHHHHHHHH
Confidence 344556666666666555
No 475
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=27.14 E-value=7.2e+02 Score=25.76 Aligned_cols=29 Identities=7% Similarity=-0.214 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 162 YDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
++..+....+.++.+.+..+-...+..-+
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L 126 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLL 126 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHh
Confidence 34445555566665555544444443333
No 476
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.92 E-value=1.3e+02 Score=31.19 Aligned_cols=101 Identities=12% Similarity=-0.025 Sum_probs=59.6
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCCh---hcHHHHHHHHHHcCChHHHHH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDL---LTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~ 383 (636)
.....++.|..++..+++.. +..+..+..-..++.+.+++..|..=+....+-++ ..|-.=..++...+.+.+|+.
T Consensus 15 l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred cccchHHHHHHHHHHHHhcC-CcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455666666666666543 22223333333566777777777666666555331 123333344455566777777
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhc
Q 006672 384 YFKKMMYSGTEPDGTVFLAILTACWYS 410 (636)
Q Consensus 384 ~~~~m~~~g~~p~~~t~~~ll~a~~~~ 410 (636)
.|+.... +.|+..-+...+.-|-..
T Consensus 94 ~l~~~~~--l~Pnd~~~~r~~~Ec~~~ 118 (476)
T KOG0376|consen 94 DLEKVKK--LAPNDPDATRKIDECNKI 118 (476)
T ss_pred HHHHhhh--cCcCcHHHHHHHHHHHHH
Confidence 7777777 888888877777766543
No 477
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.81 E-value=2.8e+02 Score=24.48 Aligned_cols=44 Identities=9% Similarity=-0.029 Sum_probs=19.4
Q ss_pred HHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 006672 137 KSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT 180 (636)
Q Consensus 137 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 180 (636)
..+....+.-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 33 ~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 33 RLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 33333333444555555555554444433333334444454443
No 478
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.81 E-value=5.9e+02 Score=24.67 Aligned_cols=154 Identities=15% Similarity=0.116 Sum_probs=78.3
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHHHhcCCcHHHHHHHHH----HHHcCCCCchhHHHHH
Q 006672 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFT-------VVSALSACAKVGALEAGVRVHNY----ISCNDFGLKGAIGTAL 337 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l 337 (636)
.-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+.... |....-+....+..+|
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtL 90 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTL 90 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHH
Confidence 344555666777777777766666555433 33455556666655443333222 2222223344455556
Q ss_pred hhHHhh-cCCHHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHH----HhHcCCCCCHHHHHHH
Q 006672 338 VDMYAK-CGNIEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKK----MMYSGTEPDGTVFLAI 403 (636)
Q Consensus 338 i~~~~~-~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~t~~~l 403 (636)
++.+-. ...++.-..+.....+ + ....-.-+|..+.+.|++.+|+.+... +.+..-+|+-.+...+
T Consensus 91 iekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhll 170 (421)
T COG5159 91 IEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLL 170 (421)
T ss_pred HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhh
Confidence 665543 2344555555444332 1 111224467788888999888876544 4444455665443333
Q ss_pred H-HHHHhcCcHHHHHHHHHH
Q 006672 404 L-TACWYSGQVKLALNFFDS 422 (636)
Q Consensus 404 l-~a~~~~g~~~~a~~~~~~ 422 (636)
= .+|-...++.++..-+..
T Consensus 171 ESKvyh~irnv~KskaSLTa 190 (421)
T COG5159 171 ESKVYHEIRNVSKSKASLTA 190 (421)
T ss_pred hHHHHHHHHhhhhhhhHHHH
Confidence 2 245455555544444433
No 479
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=26.46 E-value=1.8e+02 Score=21.78 Aligned_cols=14 Identities=0% Similarity=0.161 Sum_probs=6.5
Q ss_pred hcCCChHHHHHHhc
Q 006672 74 SLHKSIDYALSIFD 87 (636)
Q Consensus 74 ~~~g~~~~A~~~f~ 87 (636)
++.|+++-...+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34444444444444
No 480
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.44 E-value=3.8e+02 Score=29.12 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|--.|-...++|.|.+.++++. +.+|+++-.-..+..+....|.-++|+.+.....
T Consensus 398 R~l~~CYL~L~QLD~A~E~~~EAE----~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 398 RALQVCYLKLEQLDNAVEVYQEAE----EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH----hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344444555555555655555444 2355555544455555555555555555554443
No 481
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.35 E-value=7.2e+02 Score=25.50 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=9.5
Q ss_pred HHHhhcCCChHHHHHHhcc
Q 006672 70 ISSASLHKSIDYALSIFDH 88 (636)
Q Consensus 70 i~~~~~~g~~~~A~~~f~~ 88 (636)
+...++.|+.+-+.-+++.
T Consensus 39 L~~A~~~~~~~~v~~Ll~~ 57 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLMKH 57 (413)
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3344455555555555443
No 482
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.32 E-value=5.1e+02 Score=28.26 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=8.0
Q ss_pred HHHHHHHHHhcCChHHHHHH
Q 006672 202 WNVLINGCSKIGYLRKAVEL 221 (636)
Q Consensus 202 ~~~li~~~~~~g~~~~A~~~ 221 (636)
-.-++..|.+.|-.+.|.++
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I 427 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREI 427 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHH
Confidence 33344444444444444333
No 483
>PHA02875 ankyrin repeat protein; Provisional
Probab=26.25 E-value=7.2e+02 Score=25.49 Aligned_cols=172 Identities=12% Similarity=-0.004 Sum_probs=75.7
Q ss_pred hcCCChHHHHHHhccCCCCCcch--HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc--cHHHHHHHHHccCChHHHH
Q 006672 74 SLHKSIDYALSIFDHFTPKNLHI--FNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL--TYPFVSKSVASLSLLSLGR 149 (636)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~ 149 (636)
++.|+.+-+..+++.-..++... ..+.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+..+
T Consensus 10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~ 85 (413)
T PHA02875 10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE 85 (413)
T ss_pred HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence 44567777766666543333211 223344445556553 344455566555432 1122344455667666554
Q ss_pred HHHHHHHHhCCCCChh---HHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhh--HHHHHHHHHhcCChHHHHHHHhh
Q 006672 150 GLHCLIVKSGVEYDAF---VRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLL--WNVLINGCSKIGYLRKAVELFGM 224 (636)
Q Consensus 150 ~~~~~~~~~g~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 224 (636)
.++ +.|...+.. ...+.+...+..|+.+-+..+++. |..++... -.+.+...+..|+.+-+.-+++.
T Consensus 86 ~Ll----~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~----gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~ 157 (413)
T PHA02875 86 ELL----DLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR----GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH 157 (413)
T ss_pred HHH----HcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 444 333221110 112234445566776655555543 22332211 11233344456666555555544
Q ss_pred CCCCChH--HHHHHHHHHHhcCCHHHHHHHHhhCC
Q 006672 225 MPKKNVA--SWVSLIDGFMRKGDLKKAGELFEQMP 257 (636)
Q Consensus 225 m~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~ 257 (636)
-...+.. ...+.+...+..|+.+-+..+++.-.
T Consensus 158 g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga 192 (413)
T PHA02875 158 KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGA 192 (413)
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 3322111 11122233344566665555555433
No 484
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=26.20 E-value=6.3e+02 Score=24.77 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
...-..++.+.+...+.+...++++...
T Consensus 201 ~~~k~~~l~aLa~~~d~~~~~~~l~~~l 228 (324)
T PF11838_consen 201 PEEKRRLLSALACSPDPELLKRLLDLLL 228 (324)
T ss_dssp HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCHHHHHHHHHHHc
Confidence 3334444444444555555555555554
No 485
>PF14044 NETI: NETI protein
Probab=26.09 E-value=51 Score=22.72 Aligned_cols=17 Identities=35% Similarity=0.755 Sum_probs=13.2
Q ss_pred HHHHHHHHHHcCCcCCC
Q 006672 535 LEDIMAGAREQGYMPGT 551 (636)
Q Consensus 535 l~~l~~~~~~~g~~p~~ 551 (636)
+.+-+.+|++.||.|-.
T Consensus 10 I~~CL~RM~~eGY~Pvr 26 (57)
T PF14044_consen 10 ISDCLARMKKEGYMPVR 26 (57)
T ss_pred HHHHHHHHHHcCCCcee
Confidence 45667889999998853
No 486
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=26.09 E-value=4.1e+02 Score=22.57 Aligned_cols=68 Identities=10% Similarity=0.048 Sum_probs=46.5
Q ss_pred CCChhHHHHHHHHHHhcCCchH---HHHHHHHHHHHHhccCCCC-chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQ---GYQNSQNSFTKLLQLKPKH-PSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++..+--.+..++.+..+.++ .+.+++...+ .-.|.. .....-|+-++.+.|+|+.+.++.+...+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~---~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK---SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh---hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5666777778888888776554 4455554432 133432 234445677899999999999999998874
No 487
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=2.8e+02 Score=27.49 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=47.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCC-CCC--HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHH
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGT-EPD--GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLL 443 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~ 443 (636)
=.+-|.+..++..|...|.+-++... .|| .+.|+.-..+-...|++..|+.=...... +.|+ ...|--=..++
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~---~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK---LKPTHLKAYIRGAKCL 163 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh---cCcchhhhhhhhhHHH
Confidence 34557777778888887777665322 232 34555555555566777777666555542 3444 22232223334
Q ss_pred HhcCCchHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQ 457 (636)
Q Consensus 444 ~~~g~~~~A~~~~~ 457 (636)
....++++|....+
T Consensus 164 ~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 164 LELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHh
Confidence 44455555555444
No 488
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=25.57 E-value=6e+02 Score=24.31 Aligned_cols=70 Identities=10% Similarity=0.120 Sum_probs=44.3
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHH-----HH------H-HHHhccCCCCchhHHH-HHHHHHHcCChhHHHHHHHHH
Q 006672 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQ-----NS------F-TKLLQLKPKHPSSYVL-LSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~A~~~~~-----~~------~-~~~~~l~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m 497 (636)
-++.....++..|.+.|++.+|+..|- .+ . ....+-.|.+...|.+ .+--|...|+...|...++..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 357778888888999999998888775 11 1 1112334555555554 333477789999999988887
Q ss_pred HhC
Q 006672 498 QRR 500 (636)
Q Consensus 498 ~~~ 500 (636)
.++
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 489
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=25.52 E-value=6.5e+02 Score=24.70 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=15.8
Q ss_pred ChhcHHHHHHHHHHcCChHHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
....|..|+.+++..|+.+-.+-
T Consensus 320 hlK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHHHH
Confidence 44567778888888887765543
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.46 E-value=2.6e+02 Score=24.73 Aligned_cols=61 Identities=10% Similarity=-0.020 Sum_probs=36.4
Q ss_pred HhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 388 MMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 388 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
+.+.|++++..-. .++..+...+..-.|.++++.+.+ .+...+..+----++.+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 4455776664422 334444444556678888888875 445555444444557788888774
No 491
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=25.43 E-value=5.6e+02 Score=23.90 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=15.9
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
-|....+.|++++|++.+++.....++.
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l~PeiLd~ 97 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQLNPEILDT 97 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHhChHHHcc
Confidence 3444566666666666666555444443
No 492
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=25.43 E-value=3.3e+02 Score=23.33 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=38.2
Q ss_pred HHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 384 YFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 384 ~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
+.+.+.+.|++++.. -..++..+...+..-.|.++++.+.+ .+...+..+--.-++.+...|-+.
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~-~~p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELRE-EGPGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHH-hCCCCCHhHHHHHHHHHHHCCCEE
Confidence 344555667766543 22345555566666778888888874 344444444334457777778764
No 493
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.07 E-value=4.7e+02 Score=24.77 Aligned_cols=71 Identities=18% Similarity=0.201 Sum_probs=35.2
Q ss_pred HHHHHHHhhCCCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhcCCcHHHHH
Q 006672 247 KKAGELFEQMPEKGV--VSWTAMINGFSQNGEAEKALAMFFQMLD----AG-VRANDFTVVSALSACAKVGALEAGVR 317 (636)
Q Consensus 247 ~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~~~~~~~~~~~a~~ 317 (636)
+.|...|......-. ..--.|..-|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+....
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~ 239 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT 239 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 344444544433222 1223456677777888888877777642 12 12223333444444445555544443
No 494
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=24.71 E-value=1.6e+02 Score=17.79 Aligned_cols=21 Identities=10% Similarity=0.475 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVF 400 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~ 400 (636)
++.|..+|++.+. +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 3445555555554 34444444
No 495
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.65 E-value=1.9e+02 Score=28.28 Aligned_cols=108 Identities=9% Similarity=0.111 Sum_probs=54.6
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC--ChHHHHHHHHHHHhcCCHH
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK--NVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~g~~~ 247 (636)
++..+.+.++.....+.+..+. .+..-...+..+...|++..|++++.+.... ...-++.+=..- .+++
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~---~~L~ 174 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLS---SQLQ 174 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHh---HHHH
Confidence 4445555555555555555543 3344455666677777777777776654421 000000000000 1111
Q ss_pred HHHHHHhhCC---------CCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 006672 248 KAGELFEQMP---------EKGVVSWTAMINGFSQNGEAEKALAMFFQ 286 (636)
Q Consensus 248 ~A~~~~~~~~---------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 286 (636)
+-....+.+. .-|+..|..+..+|.-.|+...+.+-+..
T Consensus 175 e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 175 ETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 2112211111 23577899999999988887776644433
No 496
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=24.36 E-value=3.4e+02 Score=21.09 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.9
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCcCCCcc
Q 006672 525 HKLAKEIHSKLEDIMAGAREQGYMPGTEW 553 (636)
Q Consensus 525 ~~~~~~i~~~l~~l~~~~~~~g~~p~~~~ 553 (636)
||....+-.....+.....+.|..|....
T Consensus 60 nP~~~~~~~~~~~~~~l~~~lGLtP~sR~ 88 (100)
T PF05119_consen 60 NPAVSILNKAMKQMRSLASELGLTPASRA 88 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCCHHHHh
Confidence 89888877777788888888899886543
No 497
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=24.34 E-value=2.7e+02 Score=30.40 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=0.0
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALS 304 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 304 (636)
+.|++.+|.+.+-.+...+..|..+-...+..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d 538 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKSFWPLLLCD 538 (566)
T ss_dssp --------------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHH
Confidence 34777777777777777777777665444443
No 498
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=23.67 E-value=6.3e+02 Score=24.55 Aligned_cols=22 Identities=9% Similarity=0.071 Sum_probs=9.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHh
Q 006672 233 WVSLIDGFMRKGDLKKAGELFE 254 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~ 254 (636)
+..+...|++.++.+.+.+..+
T Consensus 118 ~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 118 DRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHhhhhhHHHHHH
Confidence 3334444444444444444333
No 499
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=23.34 E-value=3.5e+02 Score=20.80 Aligned_cols=62 Identities=19% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 127 PNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 127 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
|+...|..-++.-.....-+. ++|+.....|+..|+.+|-.+++...-+=-.+...++++.|
T Consensus 8 ~~~~~~k~~~~rk~~Ls~eE~--EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLSAEEV--ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred ChHHHHHHHHHHHhccCHHHH--HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
No 500
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=22.85 E-value=2e+02 Score=22.25 Aligned_cols=32 Identities=13% Similarity=0.384 Sum_probs=17.5
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCC
Q 006672 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNG 275 (636)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 275 (636)
.+.+.+.++++.++.++..+|..+..++...+
T Consensus 48 t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 48 TSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred CcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 34555555555555555555555555554433
Done!