Query 006672
Match_columns 636
No_of_seqs 762 out of 4624
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:52:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 4.2E-38 1.4E-42 344.0 35.5 284 209-499 282-578 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.2E-38 7.6E-43 346.2 33.0 452 38-501 30-546 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-26 6.6E-31 237.4 40.4 373 101-486 6-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.8E-26 1.6E-30 234.4 37.4 353 136-500 6-368 (388)
5 4g26_A Pentatricopeptide repea 99.9 5.7E-27 1.9E-31 246.1 22.3 197 249-446 9-223 (501)
6 4g26_A Pentatricopeptide repea 99.9 2.6E-27 8.8E-32 248.7 18.1 198 45-242 7-222 (501)
7 2gw1_A Mitochondrial precursor 99.9 8E-24 2.7E-28 226.1 31.8 424 66-501 9-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.1E-22 7E-27 211.4 31.6 322 164-496 26-405 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.7E-22 1.3E-26 213.2 32.8 432 34-478 12-490 (514)
10 3fp2_A TPR repeat-containing p 99.9 5.7E-22 1.9E-26 213.1 32.0 423 63-501 25-492 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 1.4E-21 4.9E-26 205.0 31.4 302 186-500 14-358 (450)
12 3fp2_A TPR repeat-containing p 99.9 1.3E-19 4.4E-24 194.7 32.6 427 34-475 31-500 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 2.2E-18 7.6E-23 174.3 34.6 296 164-500 3-335 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 5.7E-19 2E-23 178.7 30.1 325 129-484 3-353 (359)
15 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.7E-23 174.7 24.7 379 74-494 14-411 (449)
16 3hym_B Cell division cycle pro 99.8 1.1E-17 3.6E-22 167.3 28.7 280 200-487 23-321 (330)
17 2ooe_A Cleavage stimulation fa 99.8 6.1E-16 2.1E-20 165.7 40.6 418 52-500 3-492 (530)
18 3hym_B Cell division cycle pro 99.8 5.7E-17 1.9E-21 162.0 28.5 266 227-500 19-299 (330)
19 1fch_A Peroxisomal targeting s 99.8 9.7E-18 3.3E-22 170.6 22.3 253 233-496 67-355 (368)
20 2xm6_A Protein corresponding t 99.8 1.1E-15 3.9E-20 161.9 38.8 322 142-483 92-452 (490)
21 2xm6_A Protein corresponding t 99.8 2.8E-15 9.5E-20 158.9 41.6 361 114-502 27-434 (490)
22 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.2E-22 165.9 22.8 293 33-357 8-308 (449)
23 4g1t_A Interferon-induced prot 99.8 5.8E-17 2E-21 171.0 26.7 366 128-511 50-470 (472)
24 3mkr_A Coatomer subunit epsilo 99.8 8.4E-16 2.9E-20 150.5 31.6 248 240-501 9-265 (291)
25 4eqf_A PEX5-related protein; a 99.8 3.3E-17 1.1E-21 166.6 21.1 258 233-496 68-352 (365)
26 1fch_A Peroxisomal targeting s 99.8 8E-17 2.7E-21 163.8 23.0 284 175-461 36-358 (368)
27 4eqf_A PEX5-related protein; a 99.7 2.7E-17 9.2E-22 167.3 17.8 259 196-458 62-352 (365)
28 2ooe_A Cleavage stimulation fa 99.7 1.1E-14 3.9E-19 155.8 36.2 378 91-501 10-455 (530)
29 1xi4_A Clathrin heavy chain; a 99.7 5.2E-14 1.8E-18 156.6 41.7 373 66-492 988-1376(1630)
30 1xi4_A Clathrin heavy chain; a 99.7 2E-13 6.7E-18 152.0 46.1 404 34-485 991-1415(1630)
31 3mkr_A Coatomer subunit epsilo 99.7 4.6E-15 1.6E-19 145.2 29.6 267 209-493 9-287 (291)
32 3cv0_A Peroxisome targeting si 99.7 3.2E-16 1.1E-20 156.3 21.7 262 198-497 20-312 (327)
33 4g1t_A Interferon-induced prot 99.7 8.2E-15 2.8E-19 154.4 27.8 368 63-478 51-471 (472)
34 3cv0_A Peroxisome targeting si 99.7 1.2E-15 4.2E-20 152.0 18.6 149 306-460 148-313 (327)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.4E-17 8.2E-22 177.6 5.3 127 95-221 128-258 (1134)
36 3spa_A Mtrpol, DNA-directed RN 99.7 4.6E-17 1.6E-21 175.5 6.1 152 62-213 126-286 (1134)
37 3uq3_A Heat shock protein STI1 99.6 2.2E-14 7.5E-19 137.5 22.0 223 261-500 5-236 (258)
38 2pl2_A Hypothetical conserved 99.6 9.5E-15 3.2E-19 136.5 18.4 190 299-498 8-212 (217)
39 3u4t_A TPR repeat-containing p 99.6 6.4E-14 2.2E-18 135.7 24.0 247 232-485 5-269 (272)
40 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 134.3 18.7 238 243-494 18-269 (275)
41 3sf4_A G-protein-signaling mod 99.5 2.7E-13 9.2E-18 139.4 21.2 226 263-488 89-364 (406)
42 3e4b_A ALGK; tetratricopeptide 99.5 4.6E-13 1.6E-17 139.8 22.5 341 139-502 13-389 (452)
43 3uq3_A Heat shock protein STI1 99.5 4.3E-13 1.5E-17 128.4 20.2 235 232-479 7-255 (258)
44 1ouv_A Conserved hypothetical 99.5 6.6E-12 2.3E-16 121.6 28.3 222 261-501 6-252 (273)
45 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-12 7.8E-17 123.1 23.9 201 261-500 37-238 (252)
46 2pl2_A Hypothetical conserved 99.5 7.4E-13 2.5E-17 123.5 19.9 192 261-459 5-211 (217)
47 3u4t_A TPR repeat-containing p 99.5 1.6E-12 5.5E-17 125.7 23.0 233 262-501 4-251 (272)
48 2h6f_A Protein farnesyltransfe 99.5 6.7E-13 2.3E-17 134.4 20.9 227 261-499 97-347 (382)
49 2q7f_A YRRB protein; TPR, prot 99.5 3.7E-13 1.3E-17 127.7 18.0 209 261-479 23-235 (243)
50 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.4E-13 1.2E-17 130.6 17.9 224 272-501 16-245 (275)
51 2ho1_A Type 4 fimbrial biogene 99.5 3.4E-12 1.2E-16 121.8 24.5 207 230-475 37-247 (252)
52 2h6f_A Protein farnesyltransfe 99.5 1.2E-12 4E-17 132.6 21.7 243 231-483 98-365 (382)
53 1ouv_A Conserved hypothetical 99.5 9.4E-12 3.2E-16 120.5 27.3 220 229-461 5-250 (273)
54 3e4b_A ALGK; tetratricopeptide 99.5 3.3E-12 1.1E-16 133.3 25.4 339 34-424 9-385 (452)
55 4a1s_A PINS, partner of inscut 99.5 2.2E-13 7.4E-18 140.7 15.8 269 201-500 50-372 (411)
56 2vq2_A PILW, putative fimbrial 99.5 4.5E-12 1.6E-16 118.4 22.6 200 261-499 8-210 (225)
57 2vq2_A PILW, putative fimbrial 99.5 8.6E-12 2.9E-16 116.5 24.2 210 229-476 7-221 (225)
58 2q7f_A YRRB protein; TPR, prot 99.5 1.3E-12 4.4E-17 123.9 18.4 199 294-501 21-223 (243)
59 4e6h_A MRNA 3'-END-processing 99.5 3.5E-10 1.2E-14 122.2 37.8 428 48-502 52-572 (679)
60 3ro2_A PINS homolog, G-protein 99.5 1.2E-12 4.2E-17 130.3 17.5 238 263-500 45-332 (338)
61 3sf4_A G-protein-signaling mod 99.5 1.6E-12 5.4E-17 133.7 18.3 267 233-499 12-335 (406)
62 4abn_A Tetratricopeptide repea 99.4 1.7E-12 6E-17 136.3 18.0 209 277-496 84-317 (474)
63 4a1s_A PINS, partner of inscut 99.4 2.4E-12 8.2E-17 132.8 18.8 263 169-462 53-372 (411)
64 3vtx_A MAMA; tetratricopeptide 99.4 6E-12 2E-16 113.9 19.2 165 329-501 3-171 (184)
65 3ro2_A PINS homolog, G-protein 99.4 5E-12 1.7E-16 125.9 18.9 266 171-461 12-331 (338)
66 2ond_A Cleavage stimulation fa 99.4 1.4E-10 4.8E-15 114.5 25.4 179 278-460 81-268 (308)
67 4gyw_A UDP-N-acetylglucosamine 99.4 1E-11 3.5E-16 135.7 17.9 163 328-499 6-173 (723)
68 3ulq_A Response regulator aspa 99.4 1.3E-11 4.5E-16 126.1 17.6 228 267-499 109-367 (383)
69 3nf1_A KLC 1, kinesin light ch 99.4 1.4E-11 4.9E-16 121.3 17.2 235 261-499 27-306 (311)
70 2ond_A Cleavage stimulation fa 99.3 4.3E-10 1.5E-14 110.9 26.5 218 278-501 33-271 (308)
71 3as5_A MAMA; tetratricopeptide 99.3 2.7E-10 9.3E-15 102.4 19.8 163 331-501 8-174 (186)
72 3vtx_A MAMA; tetratricopeptide 99.3 2.5E-10 8.7E-15 103.0 19.4 165 298-471 7-175 (184)
73 3q15_A PSP28, response regulat 99.3 4.4E-10 1.5E-14 114.4 23.4 229 266-499 106-364 (378)
74 3ulq_A Response regulator aspa 99.3 4.6E-10 1.6E-14 114.5 23.5 228 170-424 109-366 (383)
75 4e6h_A MRNA 3'-END-processing 99.2 3.3E-08 1.1E-12 106.8 35.9 431 29-482 64-585 (679)
76 3nf1_A KLC 1, kinesin light ch 99.2 1.6E-10 5.3E-15 113.8 16.5 231 229-461 26-306 (311)
77 4abn_A Tetratricopeptide repea 99.2 1.7E-10 5.7E-15 121.1 16.8 181 312-501 84-288 (474)
78 1hz4_A MALT regulatory protein 99.2 4.1E-09 1.4E-13 106.9 25.9 238 263-500 55-322 (373)
79 4i17_A Hypothetical protein; T 99.2 9.4E-10 3.2E-14 103.1 18.6 207 259-481 5-224 (228)
80 3edt_B KLC 2, kinesin light ch 99.2 2.9E-10 9.9E-15 110.0 15.5 228 272-500 12-281 (283)
81 4i17_A Hypothetical protein; T 99.2 7E-10 2.4E-14 104.0 17.1 191 295-501 6-210 (228)
82 3q15_A PSP28, response regulat 99.2 9.6E-10 3.3E-14 111.9 19.2 217 172-389 109-363 (378)
83 1hz4_A MALT regulatory protein 99.1 2.5E-08 8.5E-13 101.1 28.4 163 262-424 136-320 (373)
84 3as5_A MAMA; tetratricopeptide 99.1 3.5E-09 1.2E-13 95.0 18.6 156 232-389 10-171 (186)
85 4gyw_A UDP-N-acetylglucosamine 99.1 1.5E-09 5.2E-14 118.6 18.9 159 297-461 10-173 (723)
86 4ga2_A E3 SUMO-protein ligase 99.1 5.2E-10 1.8E-14 97.2 12.0 141 337-486 3-149 (150)
87 1qqe_A Vesicular transport pro 99.1 4.5E-09 1.5E-13 102.7 19.0 162 332-499 78-268 (292)
88 3qky_A Outer membrane assembly 99.0 2E-08 6.7E-13 96.2 20.3 190 330-544 14-247 (261)
89 3edt_B KLC 2, kinesin light ch 99.0 3.8E-09 1.3E-13 102.0 13.6 213 246-460 24-279 (283)
90 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4.1E-13 85.9 15.1 131 364-501 3-133 (136)
91 3mv2_B Coatomer subunit epsilo 99.0 8.1E-08 2.8E-12 92.2 22.1 186 280-474 85-290 (310)
92 3mv2_B Coatomer subunit epsilo 99.0 5.4E-08 1.8E-12 93.4 20.0 238 242-501 25-283 (310)
93 1qqe_A Vesicular transport pro 98.9 2E-08 6.7E-13 98.1 17.2 208 245-470 32-273 (292)
94 2pzi_A Probable serine/threoni 98.9 3.5E-09 1.2E-13 116.2 12.6 169 307-486 402-583 (681)
95 2r5s_A Uncharacterized protein 98.9 2E-08 6.8E-13 89.7 14.7 158 333-499 8-172 (176)
96 2pzi_A Probable serine/threoni 98.9 1.5E-08 5E-13 111.3 16.3 195 272-474 402-610 (681)
97 3qky_A Outer membrane assembly 98.9 2E-08 7E-13 96.1 15.5 207 259-488 13-249 (261)
98 2yhc_A BAMD, UPF0169 lipoprote 98.9 5.6E-08 1.9E-12 90.7 18.0 182 297-503 5-216 (225)
99 3qou_A Protein YBBN; thioredox 98.9 2.4E-08 8.2E-13 97.1 15.7 163 328-498 114-282 (287)
100 3qou_A Protein YBBN; thioredox 98.9 8.7E-08 3E-12 93.1 19.6 168 293-463 114-285 (287)
101 2fo7_A Synthetic consensus TPR 98.9 5.5E-08 1.9E-12 81.8 14.6 126 263-390 3-131 (136)
102 4ga2_A E3 SUMO-protein ligase 98.8 4.7E-09 1.6E-13 91.1 7.7 124 368-500 3-129 (150)
103 2r5s_A Uncharacterized protein 98.8 9.2E-08 3.2E-12 85.3 15.8 157 301-463 11-174 (176)
104 2uy1_A Cleavage stimulation fa 98.8 5.5E-07 1.9E-11 94.3 24.0 374 76-499 7-412 (493)
105 2vsy_A XCC0866; transferase, g 98.8 6.4E-08 2.2E-12 104.2 16.9 161 309-478 2-169 (568)
106 3rjv_A Putative SEL1 repeat pr 98.8 2.2E-07 7.7E-12 85.7 18.1 173 315-502 5-199 (212)
107 3u3w_A Transcriptional activat 98.8 1.2E-06 4.2E-11 85.2 23.6 164 336-499 80-265 (293)
108 3urz_A Uncharacterized protein 98.8 1.7E-07 5.9E-12 86.2 16.4 185 265-480 8-199 (208)
109 3gyz_A Chaperone protein IPGC; 98.8 4.9E-08 1.7E-12 84.3 11.6 102 393-501 31-134 (151)
110 3dra_A Protein farnesyltransfe 98.8 2.5E-06 8.7E-11 82.6 24.7 219 272-499 44-286 (306)
111 3urz_A Uncharacterized protein 98.8 3.1E-07 1.1E-11 84.4 17.5 129 266-398 59-191 (208)
112 4gco_A Protein STI-1; structur 98.8 1E-07 3.5E-12 79.7 12.9 109 363-480 14-124 (126)
113 1hh8_A P67PHOX, NCF-2, neutrop 98.7 2E-07 7E-12 85.8 15.1 127 365-501 9-151 (213)
114 2ifu_A Gamma-SNAP; membrane fu 98.7 2.1E-07 7.2E-12 91.4 15.6 181 305-492 45-253 (307)
115 2vsy_A XCC0866; transferase, g 98.7 1.4E-07 4.9E-12 101.4 15.5 148 274-425 2-156 (568)
116 2vgx_A Chaperone SYCD; alterna 98.7 1E-07 3.4E-12 82.3 10.9 109 384-500 9-118 (148)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.2E-06 4.1E-11 80.5 18.9 132 333-470 8-154 (213)
118 3rjv_A Putative SEL1 repeat pr 98.7 2.1E-06 7.1E-11 79.1 20.4 174 279-462 4-197 (212)
119 2uy1_A Cleavage stimulation fa 98.7 1E-05 3.5E-10 84.7 27.9 370 44-464 11-415 (493)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 2.3E-06 7.9E-11 83.3 21.6 168 332-499 76-265 (293)
121 2c2l_A CHIP, carboxy terminus 98.7 9.1E-08 3.1E-12 92.6 10.7 191 296-500 4-199 (281)
122 3gw4_A Uncharacterized protein 98.7 5.4E-07 1.9E-11 82.0 15.5 157 343-499 4-175 (203)
123 1a17_A Serine/threonine protei 98.6 5.8E-07 2E-11 78.8 14.6 130 362-499 13-145 (166)
124 4gco_A Protein STI-1; structur 98.6 3.1E-07 1.1E-11 76.7 11.6 102 393-500 8-110 (126)
125 2yhc_A BAMD, UPF0169 lipoprote 98.6 1.5E-06 5.2E-11 80.8 17.3 187 261-470 4-217 (225)
126 2xcb_A PCRH, regulatory protei 98.6 4.1E-07 1.4E-11 77.8 12.1 102 393-500 13-115 (142)
127 1p5q_A FKBP52, FK506-binding p 98.6 3.6E-07 1.2E-11 90.9 13.1 145 347-499 129-293 (336)
128 2ifu_A Gamma-SNAP; membrane fu 98.6 7.4E-07 2.5E-11 87.4 15.2 200 273-498 3-222 (307)
129 1na0_A Designed protein CTPR3; 98.6 1.2E-06 4.2E-11 72.2 13.9 116 362-485 9-125 (125)
130 2fbn_A 70 kDa peptidylprolyl i 98.6 1.1E-07 3.7E-12 86.7 8.0 156 338-501 11-187 (198)
131 2vyi_A SGTA protein; chaperone 98.6 9.7E-07 3.3E-11 73.5 13.3 120 361-488 11-131 (131)
132 2lni_A Stress-induced-phosphop 98.5 1E-06 3.4E-11 73.8 13.0 118 361-486 15-133 (133)
133 4f3v_A ESX-1 secretion system 98.5 2.9E-06 1E-10 80.3 16.9 135 203-339 106-249 (282)
134 4f3v_A ESX-1 secretion system 98.5 7.4E-06 2.5E-10 77.5 19.4 138 333-477 104-247 (282)
135 3dra_A Protein farnesyltransfe 98.5 1.2E-05 4.2E-10 77.8 20.4 226 247-479 50-301 (306)
136 2e2e_A Formate-dependent nitri 98.5 9.3E-07 3.2E-11 78.7 11.7 121 373-501 21-145 (177)
137 3gyz_A Chaperone protein IPGC; 98.5 3.6E-07 1.2E-11 78.8 8.4 101 361-470 35-137 (151)
138 2vgx_A Chaperone SYCD; alterna 98.5 9.1E-07 3.1E-11 76.2 10.5 106 361-475 20-127 (148)
139 3gw4_A Uncharacterized protein 98.4 2.3E-06 8E-11 77.7 12.2 82 242-323 4-93 (203)
140 2qfc_A PLCR protein; TPR, HTH, 98.4 1.5E-05 5.2E-10 77.4 18.6 172 261-462 75-266 (293)
141 3q7a_A Farnesyltransferase alp 98.4 7.2E-05 2.4E-09 73.2 23.1 231 264-499 57-330 (349)
142 3upv_A Heat shock protein STI1 98.4 3.3E-06 1.1E-10 70.2 11.8 95 399-499 6-100 (126)
143 1wao_1 Serine/threonine protei 98.4 5.2E-07 1.8E-11 94.3 8.2 122 366-496 10-135 (477)
144 3ro3_A PINS homolog, G-protein 98.4 2.8E-06 9.4E-11 73.7 11.6 136 364-499 11-157 (164)
145 1a17_A Serine/threonine protei 98.4 6.7E-06 2.3E-10 71.8 14.1 127 332-462 14-146 (166)
146 2c2l_A CHIP, carboxy terminus 98.4 1.1E-06 3.7E-11 85.0 9.6 15 376-390 149-163 (281)
147 3upv_A Heat shock protein STI1 98.4 4.5E-06 1.5E-10 69.4 12.2 110 363-481 5-122 (126)
148 3u3w_A Transcriptional activat 98.4 5.6E-05 1.9E-09 73.3 21.9 198 59-289 42-265 (293)
149 1elw_A TPR1-domain of HOP; HOP 98.3 8.4E-06 2.9E-10 66.3 13.2 110 363-480 5-115 (118)
150 2xcb_A PCRH, regulatory protei 98.3 3.5E-06 1.2E-10 71.8 11.1 118 353-478 6-127 (142)
151 2kck_A TPR repeat; tetratricop 98.3 3.7E-06 1.3E-10 67.7 10.8 98 398-501 7-107 (112)
152 1wao_1 Serine/threonine protei 98.3 2.1E-06 7E-11 89.8 11.2 119 334-457 9-134 (477)
153 3sz7_A HSC70 cochaperone (SGT) 98.3 6.4E-06 2.2E-10 72.2 12.8 109 361-478 10-120 (164)
154 2dba_A Smooth muscle cell asso 98.3 9E-06 3.1E-10 69.4 13.3 114 360-481 26-143 (148)
155 1hxi_A PEX5, peroxisome target 98.3 3.1E-06 1.1E-10 69.9 9.9 95 400-501 20-115 (121)
156 3q49_B STIP1 homology and U bo 98.3 7.6E-06 2.6E-10 68.9 12.7 99 396-500 8-106 (137)
157 4gcn_A Protein STI-1; structur 98.3 2.7E-06 9.3E-11 71.0 9.3 93 400-499 11-111 (127)
158 4b4t_Q 26S proteasome regulato 98.3 3.1E-05 1E-09 79.8 19.4 125 374-498 107-243 (434)
159 3sz7_A HSC70 cochaperone (SGT) 98.3 6.1E-06 2.1E-10 72.3 11.9 99 397-501 11-109 (164)
160 2hr2_A Hypothetical protein; a 98.3 7.6E-06 2.6E-10 69.9 11.6 66 435-500 59-131 (159)
161 4gcn_A Protein STI-1; structur 98.3 7.6E-06 2.6E-10 68.2 11.4 96 363-460 9-110 (127)
162 2e2e_A Formate-dependent nitri 98.2 3.7E-06 1.3E-10 74.7 9.5 116 273-390 22-143 (177)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 6.3E-06 2.2E-10 85.7 12.4 131 361-499 267-414 (457)
164 1elw_A TPR1-domain of HOP; HOP 98.2 1.4E-05 4.8E-10 64.9 12.1 99 397-501 4-102 (118)
165 1na0_A Designed protein CTPR3; 98.2 2.6E-05 9E-10 63.9 13.5 61 262-323 10-70 (125)
166 2lni_A Stress-induced-phosphop 98.2 1.3E-05 4.3E-10 66.9 11.6 98 397-500 16-113 (133)
167 1p5q_A FKBP52, FK506-binding p 98.2 1.2E-05 4.3E-10 79.7 13.0 96 362-462 196-294 (336)
168 2kck_A TPR repeat; tetratricop 98.2 2.1E-05 7.3E-10 63.1 12.2 103 361-471 5-111 (112)
169 2dba_A Smooth muscle cell asso 98.2 2.4E-05 8.1E-10 66.7 13.0 99 396-501 27-129 (148)
170 3q49_B STIP1 homology and U bo 98.2 1.6E-05 5.4E-10 66.9 11.4 99 360-462 7-106 (137)
171 4b4t_Q 26S proteasome regulato 98.2 0.0001 3.6E-09 75.8 19.8 131 337-467 101-250 (434)
172 2xev_A YBGF; tetratricopeptide 98.1 3.7E-05 1.3E-09 63.8 13.3 108 365-478 5-117 (129)
173 2vyi_A SGTA protein; chaperone 98.1 3.7E-05 1.3E-09 63.6 13.1 91 262-354 13-103 (131)
174 3dss_A Geranylgeranyl transfer 98.1 0.00067 2.3E-08 66.0 23.2 180 312-499 90-303 (331)
175 2hr2_A Hypothetical protein; a 98.1 8.8E-06 3E-10 69.5 8.6 108 364-477 13-142 (159)
176 1hxi_A PEX5, peroxisome target 98.1 1.9E-05 6.4E-10 65.1 10.3 98 364-470 19-118 (121)
177 3rkv_A Putative peptidylprolyl 98.1 1.4E-05 5E-10 69.7 10.2 111 363-480 12-141 (162)
178 2if4_A ATFKBP42; FKBP-like, al 98.1 5.3E-06 1.8E-10 82.4 8.1 128 364-500 181-328 (338)
179 1elr_A TPR2A-domain of HOP; HO 98.1 2.1E-05 7.1E-10 65.3 10.6 113 363-482 5-123 (131)
180 3dss_A Geranylgeranyl transfer 98.1 0.00038 1.3E-08 67.8 20.3 193 278-482 91-320 (331)
181 2xev_A YBGF; tetratricopeptide 98.1 3.9E-05 1.3E-09 63.7 11.6 95 401-501 6-106 (129)
182 3k9i_A BH0479 protein; putativ 98.0 6.1E-06 2.1E-10 67.6 6.0 63 433-499 27-89 (117)
183 3ro3_A PINS homolog, G-protein 98.0 3.6E-05 1.2E-09 66.5 11.4 130 333-462 11-158 (164)
184 3rkv_A Putative peptidylprolyl 98.0 3.5E-05 1.2E-09 67.2 11.0 99 398-500 12-126 (162)
185 2fbn_A 70 kDa peptidylprolyl i 98.0 1E-05 3.4E-10 73.4 7.7 161 240-423 14-183 (198)
186 1elr_A TPR2A-domain of HOP; HO 98.0 2.2E-05 7.6E-10 65.1 9.1 108 332-442 5-121 (131)
187 1ihg_A Cyclophilin 40; ppiase 98.0 4E-05 1.4E-09 77.0 12.3 123 364-493 225-363 (370)
188 3q7a_A Farnesyltransferase alp 98.0 0.00057 2E-08 66.8 20.0 85 141-227 66-153 (349)
189 1dce_A Protein (RAB geranylger 97.9 0.00021 7.3E-09 75.9 16.8 168 313-489 46-244 (567)
190 3k9i_A BH0479 protein; putativ 97.9 1.6E-05 5.5E-10 65.0 6.4 96 374-475 2-99 (117)
191 3n71_A Histone lysine methyltr 97.9 4.8E-05 1.6E-09 78.9 10.7 131 371-501 318-465 (490)
192 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 7.6E-05 2.6E-09 77.5 11.6 100 362-466 317-419 (457)
193 3qwp_A SET and MYND domain-con 97.7 0.00028 9.7E-09 72.0 13.2 123 404-543 294-427 (429)
194 1klx_A Cysteine rich protein B 97.7 0.00027 9.2E-09 59.6 10.9 113 375-502 8-128 (138)
195 3ma5_A Tetratricopeptide repea 97.7 0.00014 4.8E-09 57.4 8.5 65 432-500 6-70 (100)
196 2l6j_A TPR repeat-containing p 97.7 0.00013 4.5E-09 58.4 8.0 94 396-495 3-102 (111)
197 1zu2_A Mitochondrial import re 97.6 5.8E-05 2E-09 64.3 5.7 86 409-501 14-121 (158)
198 2kat_A Uncharacterized protein 97.6 0.00033 1.1E-08 56.7 9.9 80 415-500 3-82 (115)
199 1na3_A Designed protein CTPR2; 97.6 0.00037 1.3E-08 53.3 9.6 83 397-485 9-91 (91)
200 2if4_A ATFKBP42; FKBP-like, al 97.6 0.00026 8.9E-09 70.1 10.6 142 262-424 180-326 (338)
201 3n71_A Histone lysine methyltr 97.6 0.00048 1.6E-08 71.4 12.9 106 363-468 352-470 (490)
202 3bee_A Putative YFRE protein; 97.6 0.00046 1.6E-08 53.4 9.4 70 430-503 3-75 (93)
203 3qww_A SET and MYND domain-con 97.6 0.00029 9.8E-09 71.8 10.5 111 409-536 310-431 (433)
204 1ihg_A Cyclophilin 40; ppiase 97.5 0.00042 1.4E-08 69.5 11.4 89 361-454 272-362 (370)
205 1zu2_A Mitochondrial import re 97.5 0.00013 4.4E-09 62.1 6.4 95 373-476 13-130 (158)
206 2l6j_A TPR repeat-containing p 97.3 0.00071 2.4E-08 54.0 8.2 91 362-457 4-102 (111)
207 1dce_A Protein (RAB geranylger 97.2 0.0094 3.2E-07 63.2 17.9 170 275-451 43-244 (567)
208 3ly7_A Transcriptional activat 97.2 0.0099 3.4E-07 58.1 15.9 135 360-501 192-340 (372)
209 3ma5_A Tetratricopeptide repea 97.2 0.0013 4.3E-08 51.7 8.0 61 362-424 7-68 (100)
210 1klx_A Cysteine rich protein B 97.1 0.0073 2.5E-07 50.6 12.3 107 276-390 10-125 (138)
211 2kat_A Uncharacterized protein 97.1 0.0018 6.3E-08 52.1 8.2 57 399-457 21-77 (115)
212 3lvg_A Clathrin heavy chain 1; 97.0 2.4E-06 8.3E-11 84.6 -11.4 369 93-494 53-477 (624)
213 3mkq_A Coatomer beta'-subunit; 97.0 0.022 7.7E-07 63.5 18.6 154 172-356 607-761 (814)
214 3qwp_A SET and MYND domain-con 96.9 0.0082 2.8E-07 61.1 13.0 108 369-476 294-415 (429)
215 1na3_A Designed protein CTPR2; 96.9 0.0099 3.4E-07 45.0 10.6 79 262-342 10-88 (91)
216 3qww_A SET and MYND domain-con 96.9 0.0066 2.3E-07 61.8 12.1 100 375-474 311-424 (433)
217 2kc7_A BFR218_protein; tetratr 96.6 0.0047 1.6E-07 48.0 7.0 63 405-474 8-72 (99)
218 2kc7_A BFR218_protein; tetratr 96.4 0.022 7.4E-07 44.0 9.6 57 367-425 5-63 (99)
219 3ly7_A Transcriptional activat 96.2 0.047 1.6E-06 53.3 12.6 67 397-470 277-343 (372)
220 3mkq_A Coatomer beta'-subunit; 96.2 0.22 7.6E-06 55.3 20.2 44 343-388 664-707 (814)
221 1pc2_A Mitochondria fission pr 96.2 0.072 2.5E-06 44.7 11.8 92 378-476 14-110 (152)
222 2v5f_A Prolyl 4-hydroxylase su 95.9 0.058 2E-06 42.3 9.9 76 398-477 6-86 (104)
223 1pc2_A Mitochondria fission pr 95.8 0.098 3.3E-06 43.9 10.8 83 412-500 13-100 (152)
224 3u64_A Protein TP_0956; tetrat 95.7 0.031 1.1E-06 52.3 8.4 87 413-506 179-275 (301)
225 3u64_A Protein TP_0956; tetrat 95.2 0.23 8E-06 46.5 12.5 139 344-497 134-295 (301)
226 3mkq_B Coatomer subunit alpha; 95.2 1 3.4E-05 38.7 15.5 46 342-389 16-61 (177)
227 2v5f_A Prolyl 4-hydroxylase su 95.2 0.11 3.6E-06 40.8 9.0 70 431-500 3-75 (104)
228 1nzn_A CGI-135 protein, fissio 95.0 0.3 1E-05 39.4 10.9 93 377-476 16-113 (126)
229 3mkq_B Coatomer subunit alpha; 94.8 1.1 3.8E-05 38.5 14.7 104 71-191 13-116 (177)
230 3bee_A Putative YFRE protein; 94.8 0.099 3.4E-06 40.0 7.4 44 379-424 26-70 (93)
231 1wy6_A Hypothetical protein ST 94.3 1.8 6.1E-05 35.1 14.4 33 470-502 124-156 (172)
232 1wy6_A Hypothetical protein ST 94.2 1.8 6.2E-05 35.0 14.1 119 344-464 20-156 (172)
233 4b4t_P 26S proteasome regulato 93.4 3.8 0.00013 41.5 18.1 181 275-457 30-242 (445)
234 4h7y_A Dual specificity protei 93.3 0.7 2.4E-05 38.3 9.8 117 89-208 8-137 (161)
235 4h7y_A Dual specificity protei 92.8 1.3 4.3E-05 36.8 10.6 109 359-474 10-131 (161)
236 3ffl_A Anaphase-promoting comp 92.5 1.2 4.1E-05 37.6 10.4 95 403-497 26-148 (167)
237 3txn_A 26S proteasome regulato 92.4 3.4 0.00011 40.9 15.4 94 403-497 105-207 (394)
238 3lvg_A Clathrin heavy chain 1; 92.3 0.0011 3.7E-08 66.1 -9.5 201 165-388 55-288 (624)
239 4gns_B Protein CSD3, chitin bi 91.4 0.78 2.7E-05 49.6 10.3 122 370-497 256-397 (754)
240 1nzn_A CGI-135 protein, fissio 90.5 4.4 0.00015 32.5 11.4 85 410-500 14-103 (126)
241 2p58_C Putative type III secre 90.5 3.3 0.00011 31.3 9.7 60 238-300 48-107 (116)
242 2uwj_G Type III export protein 90.4 3 0.0001 31.4 9.4 60 238-300 47-106 (115)
243 1qsa_A Protein (soluble lytic 89.7 23 0.00078 37.4 32.2 422 32-505 41-484 (618)
244 4fhn_B Nucleoporin NUP120; pro 89.3 15 0.00052 42.3 19.5 189 301-499 817-1049(1139)
245 3txn_A 26S proteasome regulato 88.4 21 0.0007 35.3 26.1 220 266-503 104-346 (394)
246 3ltm_A Alpha-REP4; protein eng 87.8 14 0.00047 32.5 17.9 17 163-179 32-48 (211)
247 3ltj_A Alpharep-4; protein eng 87.6 14 0.00047 32.3 18.0 18 162-179 26-43 (201)
248 2wpv_A GET4, UPF0363 protein Y 87.2 21 0.0007 33.9 21.5 181 208-425 22-216 (312)
249 4b4t_P 26S proteasome regulato 86.9 28 0.00095 35.1 20.8 221 244-483 30-287 (445)
250 1v54_E Cytochrome C oxidase po 85.7 5.2 0.00018 30.4 8.2 63 377-441 25-87 (109)
251 1y8m_A FIS1; mitochondria, unk 85.6 14 0.00047 30.3 13.7 26 474-499 80-105 (144)
252 1qsa_A Protein (soluble lytic 85.3 41 0.0014 35.5 27.3 115 377-498 229-346 (618)
253 3ffl_A Anaphase-promoting comp 84.9 4.1 0.00014 34.4 8.3 126 337-481 26-165 (167)
254 2ff4_A Probable regulatory pro 84.7 1.8 6.3E-05 43.0 7.4 66 437-506 175-245 (388)
255 2wpv_A GET4, UPF0363 protein Y 84.7 28 0.00094 33.0 17.8 112 65-187 35-157 (312)
256 4fhn_B Nucleoporin NUP120; pro 84.4 22 0.00076 40.9 17.2 52 235-287 817-868 (1139)
257 3o48_A Mitochondria fission 1 84.4 9.8 0.00034 30.7 9.9 78 392-474 35-115 (134)
258 2qx5_A Nucleoporin NIC96; mRNA 84.0 47 0.0016 35.2 20.8 83 268-361 301-386 (661)
259 4gns_B Protein CSD3, chitin bi 83.7 4.9 0.00017 43.4 10.5 50 372-423 347-397 (754)
260 2p58_C Putative type III secre 83.2 11 0.00039 28.5 8.9 78 311-392 22-99 (116)
261 2ff4_A Probable regulatory pro 82.3 7.6 0.00026 38.5 10.7 69 366-436 175-248 (388)
262 1y8m_A FIS1; mitochondria, unk 82.0 20 0.00067 29.4 13.5 76 394-474 36-114 (144)
263 2uwj_G Type III export protein 81.8 11 0.00037 28.5 8.3 78 311-392 21-98 (115)
264 3lpz_A GET4 (YOR164C homolog); 81.6 38 0.0013 32.4 19.9 112 65-187 37-159 (336)
265 3ltj_A Alpharep-4; protein eng 79.5 30 0.001 29.9 20.2 19 162-180 57-75 (201)
266 1v54_E Cytochrome C oxidase po 79.3 8.5 0.00029 29.3 7.2 61 111-172 27-87 (109)
267 3o48_A Mitochondria fission 1 79.2 23 0.0008 28.5 11.3 69 428-500 35-107 (134)
268 2y69_E Cytochrome C oxidase su 78.2 12 0.00041 30.2 8.2 63 377-441 68-130 (152)
269 4ady_A RPN2, 26S proteasome re 77.9 91 0.0031 34.6 27.8 213 239-457 383-618 (963)
270 3esl_A Checkpoint serine/threo 77.3 23 0.00077 31.0 10.5 88 435-548 82-169 (202)
271 1oyz_A Hypothetical protein YI 75.5 50 0.0017 30.4 20.1 50 227-276 170-221 (280)
272 3ltm_A Alpha-REP4; protein eng 75.0 42 0.0014 29.3 19.5 124 111-245 18-141 (211)
273 4ady_A RPN2, 26S proteasome re 70.2 1.4E+02 0.0047 33.2 29.1 151 269-424 498-656 (963)
274 2y69_E Cytochrome C oxidase su 68.5 20 0.00067 29.0 7.2 60 112-172 71-130 (152)
275 4b4t_R RPN7, 26S proteasome re 64.4 1.2E+02 0.004 30.2 16.6 96 263-358 133-235 (429)
276 3lpz_A GET4 (YOR164C homolog); 61.5 1.1E+02 0.0039 29.1 28.3 144 208-373 21-178 (336)
277 2nsz_A Programmed cell death p 60.9 57 0.0019 26.1 9.1 65 233-297 10-79 (129)
278 4b4t_R RPN7, 26S proteasome re 60.6 40 0.0014 33.8 10.0 59 365-423 134-194 (429)
279 2wvi_A Mitotic checkpoint seri 60.5 72 0.0025 26.8 9.8 53 450-504 77-129 (164)
280 1n11_A Ankyrin; clathrin, BAND 59.4 1.2E+02 0.004 30.0 13.5 82 341-433 285-372 (437)
281 4a1g_A Mitotic checkpoint seri 58.5 60 0.0021 26.9 8.9 53 450-504 82-134 (152)
282 1k1a_A B-cell lymphoma 3-encod 56.8 1E+02 0.0035 27.1 11.5 19 173-191 85-103 (241)
283 1zbp_A Hypothetical protein VP 56.5 22 0.00076 32.7 6.4 59 405-469 5-63 (273)
284 3eiq_C Programmed cell death p 54.4 73 0.0025 30.8 10.1 71 233-303 220-295 (358)
285 1wdy_A 2-5A-dependent ribonucl 54.4 91 0.0031 28.2 11.0 23 68-90 7-29 (285)
286 3eu9_A Huntingtin-interacting 54.0 65 0.0022 28.3 9.6 48 238-286 182-232 (240)
287 2ion_A PDCD4, programmed cell 51.4 61 0.0021 26.9 7.9 65 233-297 12-81 (152)
288 1wdy_A 2-5A-dependent ribonucl 51.1 1.4E+02 0.0047 26.9 11.7 83 99-189 7-94 (285)
289 1oyz_A Hypothetical protein YI 46.0 1.7E+02 0.0059 26.5 23.0 11 366-376 210-220 (280)
290 4aez_C MAD3, mitotic spindle c 44.7 1E+02 0.0035 27.3 8.6 54 449-504 130-183 (223)
291 3esl_A Checkpoint serine/threo 44.4 1.6E+02 0.0055 25.6 11.0 67 364-432 82-149 (202)
292 3kea_A K1L; tropism, ANK repea 43.9 44 0.0015 31.0 6.8 176 72-259 37-221 (285)
293 3eu9_A Huntingtin-interacting 43.6 1.6E+02 0.0056 25.5 11.4 20 303-322 214-233 (240)
294 2l0z_A Glycoprotein G2; zinc-b 42.2 8 0.00027 23.4 0.7 13 623-635 16-29 (42)
295 1zbp_A Hypothetical protein VP 40.6 2.2E+02 0.0075 26.1 11.7 108 307-425 8-128 (273)
296 1n11_A Ankyrin; clathrin, BAND 40.4 2.7E+02 0.0093 27.2 13.1 75 341-421 252-332 (437)
297 2d2s_A Exocyst complex compone 39.7 1.2E+02 0.004 27.3 8.5 31 430-460 88-118 (235)
298 2r9g_A AAA ATPase, central reg 38.5 1.4E+02 0.0048 25.9 8.2 61 266-327 16-84 (204)
299 4a1g_A Mitotic checkpoint seri 38.4 1.7E+02 0.0057 24.2 9.7 47 350-396 84-135 (152)
300 2dl1_A Spartin; SPG20, MIT, st 37.8 85 0.0029 24.5 6.1 45 446-499 35-82 (116)
301 2lo3_A SAGA-associated factor 37.0 12 0.0004 22.9 0.9 11 593-603 16-26 (44)
302 2nsz_A Programmed cell death p 36.5 1.1E+02 0.0038 24.4 7.1 61 335-395 11-76 (129)
303 4gq2_M Nucleoporin NUP120; bet 35.7 2E+02 0.0067 32.2 11.4 57 403-461 846-925 (950)
304 3kea_A K1L; tropism, ANK repea 35.0 1.8E+02 0.0061 26.6 9.6 169 77-255 10-183 (285)
305 1k1a_A B-cell lymphoma 3-encod 34.3 2.3E+02 0.0079 24.6 10.6 48 41-88 19-68 (241)
306 3hra_A Ankyrin repeat family p 31.2 1.8E+02 0.0063 24.4 8.5 56 341-396 113-172 (201)
307 2d2s_A Exocyst complex compone 30.8 1.6E+02 0.0056 26.3 8.0 24 266-289 23-46 (235)
308 3bge_A Predicted ATPase; struc 30.7 1.3E+02 0.0044 26.0 6.7 91 267-357 10-108 (201)
309 3ygs_P Procaspase 9; apoptosis 29.7 56 0.0019 24.6 4.0 38 77-114 51-88 (97)
310 3ljn_A Hypothetical protein; a 29.0 2.7E+02 0.0093 26.4 10.2 20 170-189 23-42 (364)
311 2ion_A PDCD4, programmed cell 28.7 1E+02 0.0035 25.5 5.8 61 335-395 13-78 (152)
312 3ctd_A Putative ATPase, AAA fa 28.5 2E+02 0.0067 25.2 7.5 99 258-357 29-135 (213)
313 4b4t_S RPN3, 26S proteasome re 27.6 2.2E+02 0.0076 29.0 9.0 62 433-500 231-299 (523)
314 1ug3_A EIF4GI, eukaryotic prot 27.5 2.6E+02 0.009 26.6 9.4 24 168-191 15-38 (339)
315 1ug3_A EIF4GI, eukaryotic prot 27.5 4E+02 0.014 25.2 12.8 60 234-293 15-78 (339)
316 1bpo_A Protein (clathrin); cla 27.3 4.8E+02 0.017 26.1 11.9 69 324-392 354-425 (494)
317 3ygs_P Procaspase 9; apoptosis 26.5 82 0.0028 23.6 4.4 37 244-280 51-87 (97)
318 3twr_A Tankyrase-2; ankyrin re 26.5 2.5E+02 0.0087 22.6 8.4 112 69-189 11-130 (165)
319 2hgo_A CASSIICOLIN; toxin, dis 26.2 13 0.00043 19.4 -0.2 13 624-636 8-22 (27)
320 2zu6_B Programmed cell death p 25.7 2.2E+02 0.0076 26.7 8.2 66 233-298 169-239 (307)
321 2k0q_A Putative uncharacterize 25.6 22 0.00074 24.6 0.8 21 613-633 8-29 (74)
322 2p1h_A APAF-1, apoptotic prote 25.5 1.7E+02 0.006 21.4 6.2 66 47-116 24-89 (94)
323 1qc6_A EVH1 domain from ENA/VA 25.2 29 0.00099 27.9 1.7 39 585-631 44-87 (130)
324 2zu6_B Programmed cell death p 24.9 4.3E+02 0.015 24.7 13.4 60 365-425 169-230 (307)
325 1ya0_A SMG-7 transcript varian 24.0 2E+02 0.0068 29.3 8.0 69 408-483 163-232 (497)
326 2fe3_A Peroxide operon regulat 23.9 1.8E+02 0.0063 23.5 6.6 63 386-450 11-73 (145)
327 3aji_A 26S proteasome non-ATPa 23.3 3.6E+02 0.012 23.2 9.6 176 67-255 7-194 (231)
328 4b4t_S RPN3, 26S proteasome re 23.0 3.9E+02 0.013 27.2 9.8 59 332-390 232-298 (523)
329 3jxi_A Vanilloid receptor-rela 22.9 75 0.0026 28.6 4.4 53 103-155 11-72 (260)
330 4aez_C MAD3, mitotic spindle c 22.5 3.8E+02 0.013 23.7 8.4 52 379-431 131-183 (223)
331 3ljn_A Hypothetical protein; a 22.5 4.9E+02 0.017 24.5 10.7 88 69-161 23-113 (364)
332 2r9g_A AAA ATPase, central reg 21.8 3.9E+02 0.013 23.1 11.7 45 366-411 15-62 (204)
333 4b4t_O 26S proteasome regulato 21.0 5.8E+02 0.02 24.7 10.8 18 371-388 85-102 (393)
334 3eiq_C Programmed cell death p 20.4 5.7E+02 0.02 24.5 20.4 24 168-191 58-81 (358)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-38 Score=344.01 Aligned_cols=284 Identities=11% Similarity=0.055 Sum_probs=143.9
Q ss_pred HHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHH
Q 006672 209 CSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAM 283 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 283 (636)
|.+.|++++|+++|+++.. ++..+++.++.+|.+.|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|..+
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344445555555555543 4445555555555555555555555554431 2344455555555555555555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---C
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---K 360 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 360 (636)
|+++.+.. +.+..++..+...|.+.|++++|.++|+.+.+.. +.+..+++.++.+|.+.|++++|.++|+++.+ .
T Consensus 362 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 439 (597)
T 2xpi_A 362 SNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG 439 (597)
T ss_dssp HHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 55554321 3344455555555555555555555555555432 33444555555555555555555555554432 2
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc---CCCCC--hhH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY---FIEPS--VKH 435 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~ 435 (636)
+..+|+.++.+|.+.|++++|+++|+++.+.. ..+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+
T Consensus 440 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~ 518 (597)
T 2xpi_A 440 THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518 (597)
T ss_dssp CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHH
Confidence 44455555555555555555555555555421 1124455555555555555555555555554311 33444 445
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
|..++.+|.+.|++++|.+.++++. +++|+++.+|..++.+|.+.|++++|.+.++++.+
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGL----LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH----HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 5555555555555555555555333 23455555555555555555555555555555554
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-38 Score=346.18 Aligned_cols=452 Identities=12% Similarity=0.029 Sum_probs=357.6
Q ss_pred HHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHH
Q 006672 38 IHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF 117 (636)
Q Consensus 38 l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 117 (636)
...+..+....++|......+...++.+ .....+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 107 (597)
T 2xpi_A 30 YMTPPSMGALNANNSNSQLSTLTISPMT--YLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVG 107 (597)
T ss_dssp ---------------CTTSCGGGGCGGG--GGC---------------------CHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCccHHHHhhccccccccceeechhh--hhcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 3333334444444444433333222222 12334567888889999999998899999999999999999999999999
Q ss_pred HHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC-CC---
Q 006672 118 VFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP-EK--- 193 (636)
Q Consensus 118 ~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~--- 193 (636)
++|.. ..||..++..+..+|...|++++|..+|+.+... ++++.+++.++.+|.++|++++|.++|+++. ..
T Consensus 108 ~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 183 (597)
T 2xpi_A 108 EKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE 183 (597)
T ss_dssp HHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---
T ss_pred HHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc
Confidence 99985 5688899999999999999999999999988653 6889999999999999999999999999543 22
Q ss_pred -----------CCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--C-ChHHHH-------------------------
Q 006672 194 -----------NKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--K-NVASWV------------------------- 234 (636)
Q Consensus 194 -----------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~~~~~------------------------- 234 (636)
+.+++..+|+.++.+|.+.|++++|+++|++|.. | +...+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 263 (597)
T 2xpi_A 184 KNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263 (597)
T ss_dssp -------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH
T ss_pred cccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccc
Confidence 2334689999999999999999999999999973 2 223332
Q ss_pred -------------HHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 006672 235 -------------SLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTV 299 (636)
Q Consensus 235 -------------~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 299 (636)
.++.+|.+.|++++|.++|+++.+ +++.+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 342 (597)
T 2xpi_A 264 SKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVY 342 (597)
T ss_dssp HGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTH
T ss_pred ccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHH
Confidence 235567788999999999999987 789999999999999999999999999999865 4477889
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcC
Q 006672 300 VSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHG 376 (636)
Q Consensus 300 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g 376 (636)
..++.++...|++++|.++++.+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 421 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG 421 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999998664 67889999999999999999999999998764 56789999999999999
Q ss_pred ChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
++++|+++|+++.+. .| +..++..++.+|.+.|++++|.++|+++.+. .+.++.+|..++.+|.+.|++++|.++
T Consensus 422 ~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 497 (597)
T 2xpi_A 422 EHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINH 497 (597)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 999999999999984 44 5789999999999999999999999999862 244688999999999999999999999
Q ss_pred HHHHHHHHhc--cCCCC-chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 456 SQNSFTKLLQ--LKPKH-PSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 456 ~~~~~~~~~~--l~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
|+++.+..-+ .+|.+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9988765332 25654 6799999999999999999999999998865
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-26 Score=237.36 Aligned_cols=373 Identities=13% Similarity=0.119 Sum_probs=292.2
Q ss_pred HHHHHhCCCchHHHHHHHHhHHCCCCCCccc-HHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006672 101 IRGLAENSHFQSCISHFVFMLRLSVRPNRLT-YPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK 179 (636)
Q Consensus 101 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 179 (636)
...+.+.|++++|+..|+.+.+. .|+... +..+...+...|+++.|...++..++.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34456677777777777777663 355443 3334455667777777777777777654 4566777778888888888
Q ss_pred hHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC---CChHHHHHHHHHHHhcCCHHHHHHHHhhC
Q 006672 180 TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK---KNVASWVSLIDGFMRKGDLKKAGELFEQM 256 (636)
Q Consensus 180 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 256 (636)
+++|...|+++.... +.+..+|..+..++.+.|++++|++.|+++.. .+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 888888887776543 44566777888888888888888888877652 33456677778888888888888888876
Q ss_pred CC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhH
Q 006672 257 PE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAI 333 (636)
Q Consensus 257 ~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 333 (636)
.. .+..+|+.+...|.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. |.+..+
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 53 346789999999999999999999999998864 3456778888888899999999999999888765 556788
Q ss_pred HHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc
Q 006672 334 GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS 410 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 410 (636)
+..+...|.+.|++++|...|+++.+ .+..+|..+...+.+.|++++|++.|+++.+. .+++..++..+...+...
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 88999999999999999999988764 35678999999999999999999999999884 233467888999999999
Q ss_pred CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 411 GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 411 g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
|++++|...++++.+ ..+.+...+..++.+|.+.|++++|.+.++++. +++|.++.+|..++.++...|+
T Consensus 319 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 319 GNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI----RISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH----TTCTTCHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999875 223457889999999999999999999998654 6799999999999998887664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=4.8e-26 Score=234.37 Aligned_cols=353 Identities=11% Similarity=0.075 Sum_probs=312.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCCh
Q 006672 136 SKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYL 215 (636)
Q Consensus 136 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 215 (636)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...... +.+..+|..+...+.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 345678899999999999998874 4556778888889999999999999998877655 77889999999999999999
Q ss_pred HHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 006672 216 RKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--K-GVVSWTAMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 216 ~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
++|++.|+++. +.+...+..+..++.+.|++++|...|+++.+ | +...+..+...|...|++++|.+.|+++.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999886 34556899999999999999999999998763 3 356788899999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHH
Q 006672 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWT 366 (636)
Q Consensus 290 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 366 (636)
.. +.+..++..+...+...|++++|...++.+++.. +.+...+..+...+...|++++|...|++... .+..+|.
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 241 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 241 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH
Confidence 63 4467889999999999999999999999999876 56788899999999999999999999997764 4678999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR 445 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~ 445 (636)
.+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|.+.|+++.+. .+++...+..++.++.+
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHH
Confidence 999999999999999999999998 5665 668999999999999999999999999862 35578899999999999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.|++++|.+.++++ +++.|+++.++..++.+|.+.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~a----l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 318 QGNIEEAVRLYRKA----LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHH----TTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHH----HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999855 4778999999999999999999999999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=5.7e-27 Score=246.12 Aligned_cols=197 Identities=15% Similarity=0.170 Sum_probs=174.7
Q ss_pred HHHHHhhCCCCC-----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------cHH
Q 006672 249 AGELFEQMPEKG-----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA---------LEA 314 (636)
Q Consensus 249 A~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~ 314 (636)
+..+.+++.++. ...++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344445554332 346888999999999999999999999999999999999999999987664 678
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC----CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE----KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|+.++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 006672 391 SGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 391 ~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 446 (636)
.|+.||..||+.|+.+|++.|++++|.+++++|++ .+..|+..+|+.+++.|...
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999994 89999999999999998763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2.6e-27 Score=248.74 Aligned_cols=198 Identities=12% Similarity=0.051 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhCCCCCh-hHHHHHHHHhhcCCChHHHHHHhccCC----CCCcchHHHHHHHHHhCCC---------c
Q 006672 45 KQLRQIHAQIILHNLFASS-RITTQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRGLAENSH---------F 110 (636)
Q Consensus 45 ~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~---------~ 110 (636)
..+..+...+.+.+..+.+ .+++.+|++|++.|++++|.++|++|. .||.++||+||.+|++.+. .
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3344555666666654433 457788888888888888888888876 6788888888888877654 4
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 67888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC----CCChHHHHHHHHHHHh
Q 006672 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP----KKNVASWVSLIDGFMR 242 (636)
Q Consensus 191 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~li~~~~~ 242 (636)
.+.|+.||..+|++||.+|++.|+.++|.++|++|. .|+..||+.++..|..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888776 4666777777666654
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.93 E-value=8e-24 Score=226.11 Aligned_cols=424 Identities=9% Similarity=-0.000 Sum_probs=282.2
Q ss_pred HHHHHHHhhcCCChHHHHHHhccCC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHcc
Q 006672 66 TTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASL 142 (636)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~ 142 (636)
+..+...|.+.|++++|...|+++. .|+..+|..+..++.+.|++++|+..|+++.+.+ |+ ..++..+..++...
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555443 2455555555555555555555555555555432 32 23444455555555
Q ss_pred CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHH---HhcCChHHHH
Q 006672 143 SLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGC---SKIGYLRKAV 219 (636)
Q Consensus 143 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~---~~~g~~~~A~ 219 (636)
|++++|...++.+.+.+ +++......++..+.+......+.+.+..+...+..|+...++...... ........+.
T Consensus 87 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 55555555555555543 2233333333333333333333333332222111111111111000000 0001111111
Q ss_pred HHHhhCC----------CCChHHHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-ChhhHHHHHH
Q 006672 220 ELFGMMP----------KKNVASWVSLIDGFMR---KGDLKKAGELFEQMPE----------------K-GVVSWTAMIN 269 (636)
Q Consensus 220 ~~~~~m~----------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~li~ 269 (636)
..+.... ..+...+..+...+.. .|++++|...|+++.. + +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1111111 1124455555555554 8999999999987654 1 2567888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHH
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (636)
.+...|++++|+..|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+...|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999864 347888889999999999999999999998765 5678889999999999999999
Q ss_pred HHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 350 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
|...|+++.+ .+..+|..+...|...|++++|+..++++.+ ..|+ ..++..+...+...|++++|...++++.+
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999998764 4677899999999999999999999999988 4454 56888889999999999999999999875
Q ss_pred hcCCCCC----hhHHHHHHHHHHh---cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 426 DYFIEPS----VKHHTVVVNLLSR---VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 426 ~~~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
...-.++ ...+..++..|.+ .|++++|.+.++++. +++|.++.++..++.+|...|++++|...++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS----KLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH----HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3322232 4489999999999 999999999998665 5689999999999999999999999999999998
Q ss_pred hCC
Q 006672 499 RRS 501 (636)
Q Consensus 499 ~~g 501 (636)
+..
T Consensus 477 ~~~ 479 (514)
T 2gw1_A 477 DLA 479 (514)
T ss_dssp HHC
T ss_pred Hhc
Confidence 854
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.1e-22 Score=211.45 Aligned_cols=322 Identities=12% Similarity=0.064 Sum_probs=225.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHH
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGF 240 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~ 240 (636)
...+..+...|.+.|++++|..+|+++.+.. +.+..+|..+..++.+.|++++|+..|+++. +.+..++..+..+|
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 3444455555555555555555555444332 3344555555555555555555555555443 22344555555555
Q ss_pred HhcCCHHHHHHHHhhCCCCC---h---hhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006672 241 MRKGDLKKAGELFEQMPEKG---V---VSWTAM------------INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSA 302 (636)
Q Consensus 241 ~~~g~~~~A~~~~~~~~~~~---~---~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 302 (636)
.+.|++++|...|+++...+ . ..|..+ ...+.+.|++++|+..|+++.+.. +.+..++..+
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 183 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELR 183 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 55555555555555544322 2 333333 445778888888888888888753 4467778888
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-ChhcHHHH-----------
Q 006672 303 LSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DLLTWTAM----------- 368 (636)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l----------- 368 (636)
..++...|++++|...+..+.+.. +.+..++..++..|.+.|++++|...|+++.+ | +...+..+
T Consensus 184 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 184 AECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888764 56678888888888889999999888888764 2 34455444
Q ss_pred -HHHHHHcCChHHHHHHHHHHhHcCCCCC-----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 369 -IWGLAIHGRYEQAIQYFKKMMYSGTEPD-----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 369 -i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
+..+...|++++|+..|+++.+ ..|+ ...+..+..++.+.|++++|...++++.+. .+.+...|..++.+
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 7889999999999999999998 5565 346778888999999999999999998752 23468899999999
Q ss_pred HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH------------HHHcC-----ChhHHHHHHHH
Q 006672 443 LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI------------YAAEG-----RWKDVARVRTL 496 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~ 496 (636)
|...|++++|.+.++++ ++++|.++.++..++.+ |...| +.+++.+.+++
T Consensus 339 ~~~~~~~~~A~~~~~~a----l~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETA----QEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHTTCHHHHHHHHHHH----HTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHH----HHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999855 47899999999999844 55555 45566777765
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.7e-22 Score=213.17 Aligned_cols=432 Identities=9% Similarity=-0.070 Sum_probs=319.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCc
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHF 110 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 110 (636)
....+...+++++|...+..+++.. |++.++..+...|.+.|++++|...|+++. +.+..+|..+..++...|++
T Consensus 12 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 12 KGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 4455566678999999999999986 689999999999999999999999998664 56778999999999999999
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHH---HHHHhcCChHHHHHHH
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA---DMYVQLGKTRGAFKVF 187 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li---~~~~~~g~~~~A~~~~ 187 (636)
++|+..|+++.+.+. ++......++..+........+.+.+..+.+.+..|+....+.-. ...........+...+
T Consensus 90 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998652 344555555555444333333333332222221111111111000 0001111111222222
Q ss_pred hhCCCC------CCCCChhhHHHHHHHHHh---cCChHHHHHHHhhCCC-----C------------ChHHHHHHHHHHH
Q 006672 188 DETPEK------NKSESVLLWNVLINGCSK---IGYLRKAVELFGMMPK-----K------------NVASWVSLIDGFM 241 (636)
Q Consensus 188 ~~m~~~------~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~------------~~~~~~~li~~~~ 241 (636)
...... .-+.+...+......+.. .|++++|+..|+++.. . +..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 222111 002234555555555554 8999999999888754 1 3457888889999
Q ss_pred hcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHH
Q 006672 242 RKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVH 319 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 319 (636)
..|++++|...|+++.. ++..+|..+...|...|++++|+..|+++.... +.+...+..+...+...|++++|...+
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999999988652 337789999999999999999999999998764 446678888999999999999999999
Q ss_pred HHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 320 NYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 320 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+. .|+
T Consensus 328 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~ 404 (514)
T 2gw1_A 328 DKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL--ENK 404 (514)
T ss_dssp HHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHT
T ss_pred HHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--hhc
Confidence 9999865 55778899999999999999999999998764 46778999999999999999999999999873 333
Q ss_pred -------HHHHHHHHHHHHh---cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc
Q 006672 397 -------GTVFLAILTACWY---SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL 466 (636)
Q Consensus 397 -------~~t~~~ll~a~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l 466 (636)
...+..+...+.. .|++++|...++.+... .+.+...+..++.+|.+.|++++|.+.++++. ++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~----~~ 478 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL--DPRSEQAKIGLAQMKLQQEDIDEAITLFEESA----DL 478 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH----Hh
Confidence 2378888899999 99999999999999852 23457888999999999999999999998655 67
Q ss_pred CCCCchhHHHHH
Q 006672 467 KPKHPSSYVLLS 478 (636)
Q Consensus 467 ~p~~~~~~~~l~ 478 (636)
+|.++..+..+.
T Consensus 479 ~~~~~~~~~~~~ 490 (514)
T 2gw1_A 479 ARTMEEKLQAIT 490 (514)
T ss_dssp CSSHHHHHHHHH
T ss_pred ccccHHHHHHHH
Confidence 898887777663
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=5.7e-22 Score=213.08 Aligned_cols=423 Identities=10% Similarity=0.034 Sum_probs=323.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHH
Q 006672 63 SRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRP-NRLTYPFVSKS 138 (636)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~ 138 (636)
...+..+...+.+.|++++|...|+++. +.++.+|..+...|.+.|++++|+..|+++.+.+ | +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 3456677778888899999999888654 5677888888889999999999999999888743 4 45567777788
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC--CCCChhhHHHHHHHHHhcCChH
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN--KSESVLLWNVLINGCSKIGYLR 216 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~ 216 (636)
+...|++++|...++ .+.. .|+ ..+..+..+...+....|...++.+.... ..+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 888899999998886 3322 222 22233445566667788888888876531 0122223344556667778888
Q ss_pred HHHHHHhhCCCCChH---HHHHHHHHHHhc--------CCHHHHHHHHhhCCCCC----------hhhHHHHHHHHHhCC
Q 006672 217 KAVELFGMMPKKNVA---SWVSLIDGFMRK--------GDLKKAGELFEQMPEKG----------VVSWTAMINGFSQNG 275 (636)
Q Consensus 217 ~A~~~~~~m~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~----------~~~~~~li~~~~~~g 275 (636)
.+...+......+.. ....+...+... |++++|..+|+++.+.+ ..+|..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 888888777755443 444555444333 47899999999876533 235777888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
++++|...|+++.+. .|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999985 4667888888999999999999999999999875 5678899999999999999999999999
Q ss_pred hccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 356 ETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 356 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
++.+ .+...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|...|+++.+...-.+
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 8764 45678999999999999999999999999984 455 56888889999999999999999999875321111
Q ss_pred ----ChhHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 432 ----SVKHHTVVVNLLSRV----------GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 432 ----~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
....+..+..+|.+. |++++|...++++. +++|.++.+|..++.+|...|++++|.+.++++
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC----ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223355667788888 99999999998665 568999999999999999999999999999999
Q ss_pred HhCC
Q 006672 498 QRRS 501 (636)
Q Consensus 498 ~~~g 501 (636)
.+..
T Consensus 489 l~~~ 492 (537)
T 3fp2_A 489 AILA 492 (537)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8854
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.4e-21 Score=204.99 Aligned_cols=302 Identities=13% Similarity=0.075 Sum_probs=256.1
Q ss_pred HHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---C
Q 006672 186 VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---K 259 (636)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~ 259 (636)
.|.+..... +.+...|..+...+.+.|++++|+.+|+++. +.+..++..+..+|.+.|++++|...|+++.+ .
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 333443333 6678899999999999999999999999886 35678999999999999999999999998764 3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHHhcCCcHHHHHHHHHHH
Q 006672 260 GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAND----FTVVSA------------LSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 260 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~ 323 (636)
+..+|..++..|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|...++.+.
T Consensus 93 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 93 FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4788999999999999999999999999975 3443 444444 444888999999999999999
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-H
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-V 399 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t 399 (636)
+.. +.+..++..++.+|.+.|++++|.+.|+++.+ .+..+|..++..|...|++++|+..|+++.+ ..|+.. .
T Consensus 171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~ 247 (450)
T 2y4t_A 171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRC 247 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHH
Confidence 865 66888999999999999999999999998864 5788999999999999999999999999998 566643 4
Q ss_pred HHHH------------HHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 400 FLAI------------LTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 400 ~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
+..+ ..+|.+.|++++|..+|+++.+ +.|+ ..+|..++.++.+.|++++|.+.++++.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-- 322 (450)
T 2y4t_A 248 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL-- 322 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--
Confidence 4433 7889999999999999999986 3454 4588999999999999999999999665
Q ss_pred HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+++|+++.+|..++.+|...|++++|...++++.+.
T Consensus 323 --~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 323 --QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp --HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 568999999999999999999999999999999884
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.3e-19 Score=194.66 Aligned_cols=427 Identities=8% Similarity=-0.029 Sum_probs=318.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCc
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHF 110 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 110 (636)
....+...++++.|...+..+++.. +.++.++..+...|.+.|++++|.+.|++.. +.+..+|..+...+...|++
T Consensus 31 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 109 (537)
T 3fp2_A 31 RGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNF 109 (537)
T ss_dssp HHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCH
Confidence 4455556677999999999999975 3478899999999999999999999998764 56788899999999999999
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCChHHHHHHHh
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGV--EYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~ 188 (636)
++|+..|+.+. ..|+... ..+..+...+....+...++.+++... .+........+..|....+.+.+...+.
T Consensus 110 ~~A~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 110 TDAMFDLSVLS---LNGDFDG--ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HHHHHHHHHHh---cCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 99999997443 2333221 123334444555778888888765311 1111122344556777888888888777
Q ss_pred hCCCCCCCCChhhHHHHHHHHHh--------cCChHHHHHHHhhCCCC--C--------hHHHHHHHHHHHhcCCHHHHH
Q 006672 189 ETPEKNKSESVLLWNVLINGCSK--------IGYLRKAVELFGMMPKK--N--------VASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 189 ~m~~~~~~~~~~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~--~--------~~~~~~li~~~~~~g~~~~A~ 250 (636)
...... +.....+..+...+.. .|++++|+.+|+++... + ..++..+...+...|++++|.
T Consensus 185 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 185 TSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 766332 1111233333333322 24789999999988742 2 225667778889999999999
Q ss_pred HHHhhCC--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC
Q 006672 251 ELFEQMP--EKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328 (636)
Q Consensus 251 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (636)
..|++.. .++..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +
T Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 341 (537)
T 3fp2_A 264 VLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-P 341 (537)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-C
Confidence 9999875 3457789999999999999999999999998864 4467889999999999999999999999999875 5
Q ss_pred CchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-C----CHHHH
Q 006672 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-P----DGTVF 400 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p----~~~t~ 400 (636)
.+...+..+...|...|++++|...|+++.+ .+...|..+...+...|++++|+..|+++.+.... + ....+
T Consensus 342 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 421 (537)
T 3fp2_A 342 ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPL 421 (537)
T ss_dssp TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHH
Confidence 5678899999999999999999999998764 45678999999999999999999999998873211 1 11224
Q ss_pred HHHHHHHHhc----------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 401 LAILTACWYS----------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 401 ~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
......+... |++++|...|+++.+. .+.+...+..++.+|.+.|++++|.+.++++. ++.|.+
T Consensus 422 ~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~~~~ 495 (537)
T 3fp2_A 422 IGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL--DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA----ILARTM 495 (537)
T ss_dssp HHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHC--C
T ss_pred HHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhCCCc
Confidence 4445667777 9999999999999862 23457889999999999999999999998665 567876
Q ss_pred chhHH
Q 006672 471 PSSYV 475 (636)
Q Consensus 471 ~~~~~ 475 (636)
.....
T Consensus 496 ~~~~~ 500 (537)
T 3fp2_A 496 DEKLQ 500 (537)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=2.2e-18 Score=174.35 Aligned_cols=296 Identities=10% Similarity=0.076 Sum_probs=198.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhc
Q 006672 164 AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRK 243 (636)
Q Consensus 164 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~ 243 (636)
+..+..+...+.+.|++++|...|+++.+.. +.+..+|..+...+...|++++|+..|+++...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------- 66 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--------------- 66 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence 3455566666666677777776666665443 444556666666666666666666655554310
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHH
Q 006672 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA----NDFTVVSA------------LSACA 307 (636)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p----~~~t~~~l------------l~~~~ 307 (636)
...+...|..+...|...|++++|...|+++.+. .| +...+..+ ...+.
T Consensus 67 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 67 -------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp -------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112344555555555555555555555555543 22 22222222 45666
Q ss_pred hcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHH
Q 006672 308 KVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
..|++++|...+..+.+.. +.+..++..+...|...|++++|...++++.+ .+..+|..+...|...|++++|+..
T Consensus 132 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777777654 45667777788888888888888888877664 3566788888888888888888888
Q ss_pred HHHHhHcCCCCCH-HHHH------------HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-h----hHHHHHHHHHHhc
Q 006672 385 FKKMMYSGTEPDG-TVFL------------AILTACWYSGQVKLALNFFDSMRFDYFIEPS-V----KHHTVVVNLLSRV 446 (636)
Q Consensus 385 ~~~m~~~g~~p~~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~----~~~~~l~~~~~~~ 446 (636)
|++..+ ..|+. ..+. .+...+...|++++|...++++.+. .|+ . ..+..++.+|.+.
T Consensus 211 ~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~ 285 (359)
T 3ieg_A 211 VRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKD 285 (359)
T ss_dssp HHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHc
Confidence 888877 44442 2222 2255678889999999999988752 233 2 3355678889999
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
|++++|.+.++++. +++|.++.+|..++.+|...|++++|.+.++++.+.
T Consensus 286 ~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 286 EKPVEAIRICSEVL----QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp TCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHH----HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999988665 458888999999999999999999999999988874
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.85 E-value=5.7e-19 Score=178.69 Aligned_cols=325 Identities=11% Similarity=-0.005 Sum_probs=244.9
Q ss_pred cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 006672 129 RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (636)
Q Consensus 129 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 208 (636)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3456677788899999999999999999975 4568899999999999999999999999987654 5577889999999
Q ss_pred HHhcCChHHHHHHHhhCCCCCh------HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHH
Q 006672 209 CSKIGYLRKAVELFGMMPKKNV------ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALA 282 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 282 (636)
+...|++++|+..|+++...++ ..+..+...+. ...+..+...+...|++++|+.
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~~ 141 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAIT 141 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999988864332 23333321110 1123344566777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---
Q 006672 283 MFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--- 359 (636)
Q Consensus 283 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--- 359 (636)
.|+++.+.. +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+
T Consensus 142 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 219 (359)
T 3ieg_A 142 FLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 219 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 777776643 3455666667777777777777777777777654 55667777777777777777777777776654
Q ss_pred CChhcHH------------HHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-----HHHHHHHHHHhcCcHHHHHHHHHH
Q 006672 360 KDLLTWT------------AMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-----VFLAILTACWYSGQVKLALNFFDS 422 (636)
Q Consensus 360 ~~~~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~ 422 (636)
.+...|. .+...+...|++++|+..++++.+. .|+.. .+..+..++...|++++|...++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 297 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 2222332 3366788999999999999999984 45532 344567789999999999999999
Q ss_pred hHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 423 MRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 423 m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
..+. .+.++..+..++.+|.+.|++++|.+.++++ ++++|+++..+..+..++...
T Consensus 298 ~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a----~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 298 VLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAA----QEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCCChHHHHHHHHHHHHH
Confidence 9862 2346889999999999999999999999855 478999999888887776543
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.1e-18 Score=174.74 Aligned_cols=379 Identities=13% Similarity=0.138 Sum_probs=189.4
Q ss_pred hcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHH
Q 006672 74 SLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHC 153 (636)
Q Consensus 74 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 153 (636)
-+.|++++|.+.+++++.|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 36888999999999996654 8999999999999999999999763 577899999999999999999999888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHH
Q 006672 154 LIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASW 233 (636)
Q Consensus 154 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 233 (636)
...+. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 77774 5567889999999999999999998885 467789999999999999999999999988 489
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcH
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALE 313 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 313 (636)
..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+. +.|+ -...++..|.+.|.++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHHHHCCCHH
Confidence 999999999999999999999993 78999999999999999999966554322 3444 3557889999999999
Q ss_pred HHHHHHHHHHHcCCCCchhHHHHHhhHHhh--cCCHHHHHHHHhhccC--------CChhcHHHHHHHHHHcCChHHHHH
Q 006672 314 AGVRVHNYISCNDFGLKGAIGTALVDMYAK--CGNIEAASLVFGETKE--------KDLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
++..+++..+... +....+|+-|...|++ -+++.+..+.|..-.. .+...|..+...|.+.++++.|..
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 9999999998766 6678888888888876 4577788888865443 367799999999999999999877
Q ss_pred HHHHHhHc-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHH--------HhHhhcCCCCChhHHHHHHHHHHhcCCchHHHH
Q 006672 384 YFKKMMYS-GTEPDGTVFLAILTACWYSGQVKLALNFFD--------SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 384 ~~~~m~~~-g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
. |.+. ...-+...|..++.--....-+-+|..++- .+.. .+.|... .+-.+..+.+.|.+.-...
T Consensus 304 t---m~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~--~l~~~ld-~~r~v~~~~~~~~l~l~~~ 377 (449)
T 1b89_A 304 T---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLM--VLSPRLD-HTRAVNYFSKVKQLPLVKP 377 (449)
T ss_dssp H---HHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHH--HHGGGCC-HHHHHHHHHHTTCTTTTHH
T ss_pred H---HHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHH--HHHhccC-cHHHHHHHHHcCCcHHHHH
Confidence 4 3332 121223344333332222222223333221 1100 0112111 1445666777777777777
Q ss_pred HHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 455 NSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 455 ~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
++..+. +-++..+-.+|-..|....+++.-....
T Consensus 378 yl~~v~------~~n~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 378 YLRSVQ------NHNNKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHH------TTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH------HhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 765333 2345667778888899988887644433
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.1e-17 Score=167.32 Aligned_cols=280 Identities=11% Similarity=0.007 Sum_probs=184.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHh
Q 006672 200 LLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQ 273 (636)
Q Consensus 200 ~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 273 (636)
..+..+...+...|++++|+++|+++. +.+...+..++..+.+.|++++|...|+++.+ .+...|..+...|..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM 102 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 333334444444444444444444433 11222333344444444555555554444332 235566667777777
Q ss_pred CC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHH
Q 006672 274 NG-EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (636)
Q Consensus 274 ~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (636)
.| ++++|...|++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|...|++++|..
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAER 180 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHH
Confidence 77 7777777777776543 3345566666777777777777777777776654 3445566667777788888888888
Q ss_pred HHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC--------CCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 353 VFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--------EPDGTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 353 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
.|++..+ .+...|..+...+...|++++|+..++++.+... ..+..++..+..++...|++++|...++
T Consensus 181 ~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 181 FFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8877664 3566788888888888888888888888876311 2224678888888889999999999999
Q ss_pred HhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH-HcCCh
Q 006672 422 SMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA-AEGRW 487 (636)
Q Consensus 422 ~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~-~~g~~ 487 (636)
+..+. .+.+...+..++.+|.+.|++++|.+.+++ .++++|+++..+..++.++. ..|+.
T Consensus 261 ~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~----al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 261 QALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHT----ALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHT----TTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHH----HHccCCCchHHHHHHHHHHHHHhCch
Confidence 88752 233577888899999999999999988874 45778988889998888884 45543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.80 E-value=6.1e-16 Score=165.68 Aligned_cols=418 Identities=12% Similarity=0.076 Sum_probs=289.6
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC
Q 006672 52 AQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN 128 (636)
Q Consensus 52 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 128 (636)
+..++.. +-+..+|..++. +.+.|+++.|+.+|+++. +.+...|..++..+.+.|++++|..+|++..+. .|+
T Consensus 3 e~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~ 78 (530)
T 2ooe_A 3 EKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLH 78 (530)
T ss_dssp HHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCC
T ss_pred hhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC
Confidence 4444443 347778988998 477899999999999775 456778999999999999999999999999874 477
Q ss_pred cccHHHHHHHH-HccCChHHHHH----HHHHHHHh-CCCC-ChhHHHHHHHHHHh---------cCChHHHHHHHhhCCC
Q 006672 129 RLTYPFVSKSV-ASLSLLSLGRG----LHCLIVKS-GVEY-DAFVRVHLADMYVQ---------LGKTRGAFKVFDETPE 192 (636)
Q Consensus 129 ~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~ 192 (636)
...|...+... ...|+.+.|++ +|+..++. |..| +...|...+....+ .|+++.|..+|++..+
T Consensus 79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 66666666533 34577776665 77776654 5443 45678877777655 6889999999998886
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh-------CC------CC
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ-------MP------EK 259 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------~~------~~ 259 (636)
.........|..........|. ..+..++. .+.++++.|..++.. +. .+
T Consensus 159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred chhhhHHHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 2111112344333221111111 11111111 022334445444432 11 11
Q ss_pred C--------hhhHHHHHHHHHhC----CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCcH---
Q 006672 260 G--------VVSWTAMINGFSQN----GEA----EKALAMFFQMLDAGVRANDFTVVSALSACAK-------VGALE--- 313 (636)
Q Consensus 260 ~--------~~~~~~li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~~--- 313 (636)
+ ...|...+.-...+ ++. ++|..+|++..... +-+...|......+.. .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 1 24566555433332 232 47788898888752 4466777777777664 68887
Q ss_pred ----HHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-Ch-hcHHHHHHHHHHcCChHHHHHHH
Q 006672 314 ----AGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--K-DL-LTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 314 ----~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
+|..+++..++.-.|.+..++..++..+.+.|++++|..+|+++.+ | +. ..|..++..+.+.|+.++|.++|
T Consensus 300 ~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~ 379 (530)
T 2ooe_A 300 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8999999988633456788999999999999999999999998764 3 33 47999999888999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHH-HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 386 KKMMYSGTEPD-GTVFLAILTA-CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
++..+. .|+ ...+...... +...|+.++|..+|+...+.. +.++..|..+++.+.+.|+.++|..+|+++.
T Consensus 380 ~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al--- 452 (530)
T 2ooe_A 380 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVL--- 452 (530)
T ss_dssp HHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH---
T ss_pred HHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH---
Confidence 999884 443 2333332222 335899999999999988632 3357889999999999999999999999765
Q ss_pred hccCCCCch----hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 464 LQLKPKHPS----SYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 464 ~~l~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+..|.++. .|...+......|+.+.+..+.+++.+.
T Consensus 453 -~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 453 -TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34454444 7888888888899999999999988774
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5.7e-17 Score=162.00 Aligned_cols=266 Identities=13% Similarity=0.103 Sum_probs=230.0
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 227 KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 227 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
..+...+..+...+...|++++|.++|+++.. .+...+..++..+...|++++|..+++++.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 35667788889999999999999999998764 335677788899999999999999999999863 44667888888
Q ss_pred HHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChH
Q 006672 304 SACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE 379 (636)
Q Consensus 304 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 379 (636)
..+...| ++++|...++.+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence 9999999 9999999999999765 56788899999999999999999999998875 35678888999999999999
Q ss_pred HHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-------CCCChhHHHHHHHHHHhcCCchH
Q 006672 380 QAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-------IEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
+|+..++++.+ ..|+ ...+..+...+...|++++|...++++.+... .+.....+..++.+|.+.|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998 4555 67888899999999999999999999875321 13446799999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
|.+.++++. ++.|.++.+|..++.+|...|++++|.+.++++.+.
T Consensus 255 A~~~~~~a~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQAL----VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHH----HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHH----hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999998665 568999999999999999999999999999988764
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.78 E-value=9.7e-18 Score=170.60 Aligned_cols=253 Identities=11% Similarity=0.059 Sum_probs=173.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 33444444444444444444444321 223445555555555555555555555555432 23444555555555555
Q ss_pred CCcHHHHHHHHHHHHcCCCCchhHHH----------------HHhhHHhhcCCHHHHHHHHhhccC--C---ChhcHHHH
Q 006672 310 GALEAGVRVHNYISCNDFGLKGAIGT----------------ALVDMYAKCGNIEAASLVFGETKE--K---DLLTWTAM 368 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~l 368 (636)
|++++|...+..+.+.. +.+...+. .+...+ ..|++++|...|+++.+ | +..+|..+
T Consensus 146 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l 223 (368)
T 1fch_A 146 SLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 223 (368)
T ss_dssp TCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence 55555555555555433 11111111 233333 88899999999988764 3 46788999
Q ss_pred HHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG 447 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g 447 (636)
...|...|++++|+..|+++.+ ..|+ ..++..+...+...|++++|...|+++.+. .+.+...+..++.+|.+.|
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC
Confidence 9999999999999999999988 4555 678889999999999999999999998852 2345788999999999999
Q ss_pred CchHHHHHHHHHHHHHhccCCCC-----------chhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 448 QDSQGYQNSQNSFTKLLQLKPKH-----------PSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 448 ~~~~A~~~~~~~~~~~~~l~p~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
++++|.+.++++.+ +.|++ ..+|..++.+|...|++++|..++++
T Consensus 300 ~~~~A~~~~~~al~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 300 AHREAVEHFLEALN----MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHH----HHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CHHHHHHHHHHHHH----hCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999997764 44554 78999999999999999999988764
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=1.1e-15 Score=161.87 Aligned_cols=322 Identities=11% Similarity=-0.001 Sum_probs=187.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHh----cC
Q 006672 142 LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSK----IG 213 (636)
Q Consensus 142 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g 213 (636)
.++++.|...++...+.| ++..+..|..+|.. .+++++|.+.|++..+.| +..++..+...|.. .+
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 444444444444444432 33334444444444 445555555555444322 33444444444444 44
Q ss_pred ChHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHH
Q 006672 214 YLRKAVELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAM 283 (636)
Q Consensus 214 ~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l 283 (636)
++++|++.|++..+ .+...+..|..+|.. .++.++|.+.|++..+. +..++..+...|.. .+++++|..+
T Consensus 166 d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~ 245 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVL 245 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 55555555544332 344455555555555 55666666666554332 34555556666654 5667777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc-----CCHHHHHHHH
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC-----GNIEAASLVF 354 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~ 354 (636)
|++..+.| +...+..+...+.. .++.++|...++...+.+ ++..+..|..+|... ++.++|...|
T Consensus 246 ~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~ 319 (490)
T 2xm6_A 246 FSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWY 319 (490)
T ss_dssp HHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHH
Confidence 76666543 33444445555554 566777777777666543 344555666666665 6777777777
Q ss_pred hhccC-CChhcHHHHHHHHHHcC---ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhh
Q 006672 355 GETKE-KDLLTWTAMIWGLAIHG---RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFD 426 (636)
Q Consensus 355 ~~~~~-~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~ 426 (636)
++..+ .+...+..+...|...| +.++|++.|++..+.| +...+..+...|.. .+++++|...|++..+
T Consensus 320 ~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~- 395 (490)
T 2xm6_A 320 TKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE- 395 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-
T ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-
Confidence 76654 35566677777776655 6778888888877753 45666667777766 6788888888887764
Q ss_pred cCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 427 YFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 427 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
.+ ++..+..+..+|.+ .+++++|.+.|+++.+.... .|.++.....|+.++..
T Consensus 396 ~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~-~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 396 QG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN-LFGTENRNITEKKLTAK 452 (490)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC-HHHHHHHHHHHTTSCHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC-CcCCHHHHHHHHhcCHh
Confidence 22 46677778888877 78888888888876654210 03355566666655543
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.78 E-value=2.8e-15 Score=158.87 Aligned_cols=361 Identities=12% Similarity=0.020 Sum_probs=296.6
Q ss_pred HHHHHHhHHCCCCCCcccHHHHHHHHHc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHH
Q 006672 114 ISHFVFMLRLSVRPNRLTYPFVSKSVAS----LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQ----LGKTRGAFK 185 (636)
Q Consensus 114 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 185 (636)
+..+....+.| +...+..+-..+.. .++++.|...++...+.| ++..+..|...|.. .++.++|.+
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44444444432 44555555555555 788888999998888764 56678888889998 899999999
Q ss_pred HHhhCCCCCCCCChhhHHHHHHHHHh----cCChHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCCHHHHHHHHhhC
Q 006672 186 VFDETPEKNKSESVLLWNVLINGCSK----IGYLRKAVELFGMMPK-KNVASWVSLIDGFMR----KGDLKKAGELFEQM 256 (636)
Q Consensus 186 ~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~ 256 (636)
.|++..+.| +..++..|...|.. .+++++|+..|++... .++..+..|..+|.. .++.++|.+.|++.
T Consensus 101 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 101 WYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 999887644 67788888888988 8899999999998764 467788889999987 88999999999987
Q ss_pred CC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHcCC
Q 006672 257 PE-KGVVSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDF 327 (636)
Q Consensus 257 ~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 327 (636)
.+ .+..++..+...|.. .+++++|+.+|++..+.| +...+..+...+.. .++.++|...++...+.+
T Consensus 178 ~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 178 AEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp HHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred HHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 64 457788899999988 899999999999999875 55667777777775 789999999999998765
Q ss_pred CCchhHHHHHhhHHhh----cCCHHHHHHHHhhccC-CChhcHHHHHHHHHHc-----CChHHHHHHHHHHhHcCCCCCH
Q 006672 328 GLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAIH-----GRYEQAIQYFKKMMYSGTEPDG 397 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~ 397 (636)
+...+..|..+|.. .++.++|...|++..+ .+..++..+...|... +++++|+..|++..+.| +.
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 45677778888887 8999999999999876 4677888888888887 89999999999999864 44
Q ss_pred HHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCC
Q 006672 398 TVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 398 ~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
..+..+...|...| +.++|.++|++..+ . .++..+..+..+|.. .+++++|.+.++++.+. .+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~------~~ 398 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ------GL 398 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------TC
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC------CC
Confidence 56667777777656 88999999999985 2 467888999999998 89999999999987753 36
Q ss_pred chhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 471 PSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 471 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
+..+..|+.+|.. .+++++|...+++..+.|.
T Consensus 399 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 399 SAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7899999999999 8999999999999999774
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.8e-17 Score=165.93 Aligned_cols=293 Identities=10% Similarity=0.060 Sum_probs=139.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchH
Q 006672 33 HIISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQS 112 (636)
Q Consensus 33 ~~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 112 (636)
....+|..++++++|.+..+++ +++.+|..|..++.+.|++++|.+.|.+. +|...|..++.++...|++++
T Consensus 8 a~~~ll~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 8 AVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHH
Confidence 4556778888899999999988 23459999999999999999999999764 677799999999999999999
Q ss_pred HHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 113 CISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPE 192 (636)
Q Consensus 113 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 192 (636)
|+..++..++. .++..+.+.++.++.+.|++.++.++++ .|+..+|+.+.+.|...|++++|...|..+
T Consensus 80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-- 148 (449)
T 1b89_A 80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT--
T ss_pred HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--
Confidence 99977776663 4567888999999999999999988874 477789999999999999999999999987
Q ss_pred CCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHH
Q 006672 193 KNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFS 272 (636)
Q Consensus 193 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 272 (636)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+. ..+.-...++..|.
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA--~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Ye 218 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQ 218 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc--CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHH
Confidence 38999999999999999999999999 489999999999999999999988877655 44444556889999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCcHHHHHHHHHHHHcCCCC------chhHHHHHhhHHhhc
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK--VGALEAGVRVHNYISCNDFGL------KGAIGTALVDMYAKC 344 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~------~~~~~~~li~~~~~~ 344 (636)
+.|++++|+.+++...... +--...|+-+.-++++ .+++.+..+.|.. +.++++ +..+|..++-.|.+-
T Consensus 219 k~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 219 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp HTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988654 4445566666555554 3455555555442 223333 567888999999999
Q ss_pred CCHHHHHHHHhhc
Q 006672 345 GNIEAASLVFGET 357 (636)
Q Consensus 345 g~~~~A~~~~~~~ 357 (636)
++++.|..+.-+-
T Consensus 296 ~e~d~A~~tm~~h 308 (449)
T 1b89_A 296 EEYDNAIITMMNH 308 (449)
T ss_dssp TCHHHHHHHHHHS
T ss_pred chHHHHHHHHHhC
Confidence 9999988765443
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=5.8e-17 Score=170.97 Aligned_cols=366 Identities=11% Similarity=-0.049 Sum_probs=236.3
Q ss_pred CcccHHHHHHHHHccCChHHHHHHHHHHHHh-----C---CCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCC------
Q 006672 128 NRLTYPFVSKSVASLSLLSLGRGLHCLIVKS-----G---VEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEK------ 193 (636)
Q Consensus 128 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 193 (636)
....|+.+-..+...|++++|.+.|++.++. + -+....+|+.+..+|...|++++|...+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3556888888888999999999999988763 1 1223567888999999999999999998765321
Q ss_pred -CCCCChhhHHHHHHHHHhc--CChHHHHHHHhhCCC---CChHHHHHHHHH---HHhcCCHHHHHHHHhhCC---CCCh
Q 006672 194 -NKSESVLLWNVLINGCSKI--GYLRKAVELFGMMPK---KNVASWVSLIDG---FMRKGDLKKAGELFEQMP---EKGV 261 (636)
Q Consensus 194 -~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~---~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~---~~~~ 261 (636)
.......++..+..++... +++++|++.|++..+ .++..+..+..+ +...++.++|++.|++.. ..+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1122345566666566554 468999999988762 345555555544 345567777777777654 2345
Q ss_pred hhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHH
Q 006672 262 VSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL 337 (636)
Q Consensus 262 ~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 337 (636)
.++..+...+.. .|++++|...+++..... +.+...+..+...+...|+++.|...+..+.+.. |.+..++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence 666666555544 467788999998887753 4566778888889999999999999999988765 5567777777
Q ss_pred hhHHhhc-------------------CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 338 VDMYAKC-------------------GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 338 i~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
...|... +..+.|...|+...+ .+..+|..+...|...|++++|+..|++.++....|
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 7766432 234566666666543 456688888899999999999999999988843333
Q ss_pred CHH--HHHHHHH-HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 396 DGT--VFLAILT-ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 396 ~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
... .+..+.. .....|+.++|+..|++..+ +.|+...... .....++..++.++.+|.++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~-------------~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEK-------------MKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHH-------------HHHHHHHHHHHHHHHCC-CTT
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHH-------------HHHHHHHHHHHHHHhCCCCHH
Confidence 221 2233322 33467889999999988875 5565432221 222233444566778999999
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEE
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYI 511 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i 511 (636)
+|..|+.+|...|++++|++.+++..+.|...+.+.+|+
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999999876555555553
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=8.4e-16 Score=150.46 Aligned_cols=248 Identities=13% Similarity=0.023 Sum_probs=188.4
Q ss_pred HHhcCCHHHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
....|++..|+..++.....+ ......+..+|...|++++|+..++. .-+|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 344567777777766655433 22344556777777777777765543 1355666777777777777778888
Q ss_pred HHHHHHHHHcCC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC
Q 006672 316 VRVHNYISCNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (636)
Q Consensus 316 ~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 394 (636)
.+.++.+...+. |.+...+..+...|...|++++|.+.+++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888877776553 44666777788888999999999999988 567788999999999999999999999999984 5
Q ss_pred CCHHHH---HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 395 PDGTVF---LAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 395 p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
|+.... ...+..+...|++++|..+|+++.+. .+.++..++.++.++.+.|++++|.+.++++. +++|.++
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al----~~~p~~~ 234 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL----DKDSGHP 234 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCH
Confidence 664311 12223344568999999999999863 35678899999999999999999999998655 6699999
Q ss_pred hhHHHHHHHHHHcCChhH-HHHHHHHHHhCC
Q 006672 472 SSYVLLSNIYAAEGRWKD-VARVRTLMQRRS 501 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~g 501 (636)
.++..++.++...|++++ +.++++++.+..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 999999999999999976 578889888744
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.76 E-value=3.3e-17 Score=166.62 Aligned_cols=258 Identities=9% Similarity=0.030 Sum_probs=175.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKV 309 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 309 (636)
+..+...+.+.|++++|...|+++.. .+..+|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHcc
Confidence 44444444455555555555544432 234556666666666666666666666665542 33455566666666666
Q ss_pred CCcHHHHHHHHHHHHcCCC---------CchhHHHHHhhHHhhcCCHHHHHHHHhhccC--C---ChhcHHHHHHHHHHc
Q 006672 310 GALEAGVRVHNYISCNDFG---------LKGAIGTALVDMYAKCGNIEAASLVFGETKE--K---DLLTWTAMIWGLAIH 375 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~ 375 (636)
|++++|...++.+.+.... ....++..+...|.+.|++++|...|+++.+ | +..+|..+...|...
T Consensus 147 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 226 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLS 226 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHC
Confidence 6666666666666543210 1123344567888889999999999988774 2 577899999999999
Q ss_pred CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHH
Q 006672 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
|++++|+..|+++.+ ..|+ ..++..+..+|...|++++|...|+++.+ +.| +...|..++.+|.+.|++++|.
T Consensus 227 g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 227 GEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE---IQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998 4454 67899999999999999999999999986 234 4888999999999999999999
Q ss_pred HHHHHHHHHHhccCC--------CCchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 454 QNSQNSFTKLLQLKP--------KHPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
+.++++.+..-.... .+...|..|+.++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999977654322110 0467899999999999999998887654
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=8e-17 Score=163.81 Aligned_cols=284 Identities=14% Similarity=0.054 Sum_probs=216.2
Q ss_pred HhcCChHHHHH-HHhhCCCCCC---CCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHH
Q 006672 175 VQLGKTRGAFK-VFDETPEKNK---SESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLK 247 (636)
Q Consensus 175 ~~~g~~~~A~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~ 247 (636)
.-.|++++|.. .|++...... ..+...|..+...+.+.|++++|+..|+++. +.+..++..+...|.+.|+++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 34577888887 7776554321 1145678888888888888888888888876 345678888888889999999
Q ss_pred HHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHHhc
Q 006672 248 KAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVS---------------ALSACAKV 309 (636)
Q Consensus 248 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~---------------ll~~~~~~ 309 (636)
+|...|+++.+ .+..+|..+...|...|++++|+..|+++...... +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 99988887653 35778889999999999999999999999875321 1111111 23334488
Q ss_pred CCcHHHHHHHHHHHHcCCCC-chhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 310 GALEAGVRVHNYISCNDFGL-KGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 310 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
|++++|...+..+.+..... +..++..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998865221 688999999999999999999999998764 46779999999999999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC---------CChhHHHHHHHHHHhcCCchHHHHH
Q 006672 386 KKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE---------PSVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~---------p~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
+++.+ ..|+ ..++..+..++...|++++|...|+++.+...-. .....|..++.+|.+.|+.++|..+
T Consensus 275 ~~al~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 275 RRALE--LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99998 4555 6788899999999999999999999987521100 1168899999999999999999999
Q ss_pred HHHHHH
Q 006672 456 SQNSFT 461 (636)
Q Consensus 456 ~~~~~~ 461 (636)
+++..+
T Consensus 353 ~~~~l~ 358 (368)
T 1fch_A 353 DARDLS 358 (368)
T ss_dssp HTTCHH
T ss_pred HHHHHH
Confidence 885543
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=2.7e-17 Score=167.27 Aligned_cols=259 Identities=12% Similarity=0.022 Sum_probs=206.2
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHH
Q 006672 196 SESVLLWNVLINGCSKIGYLRKAVELFGMMP---KKNVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMIN 269 (636)
Q Consensus 196 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 269 (636)
..+...|..+...+.+.|++++|+..|+++. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|..++.
T Consensus 62 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3456678888888899999999999988876 35667888899999999999999999988753 34778999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC-CchhHHHHH
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRAN-----------DFTVVSALSACAKVGALEAGVRVHNYISCNDFG-LKGAIGTAL 337 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 337 (636)
.|...|++++|+..|+++.+.. |+ ...+..+...+...|++++|...++.+.+.... .+..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999988742 32 222334567788899999999999999987522 168899999
Q ss_pred hhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcH
Q 006672 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQV 413 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 413 (636)
...|.+.|++++|...|+++.+ .+..+|+.+..+|...|++++|+..|+++.+ ..|+ ..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998764 4678999999999999999999999999998 4566 67888999999999999
Q ss_pred HHHHHHHHHhHhhcCC----------CCChhHHHHHHHHHHhcCCchHHHHHHHH
Q 006672 414 KLALNFFDSMRFDYFI----------EPSVKHHTVVVNLLSRVGQDSQGYQNSQN 458 (636)
Q Consensus 414 ~~a~~~~~~m~~~~~~----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 458 (636)
++|...|+++.+...- ..+...|..+..++...|+.+.|.+..++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999998752210 01367899999999999999998887663
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=1.1e-14 Score=155.82 Aligned_cols=378 Identities=10% Similarity=0.019 Sum_probs=255.2
Q ss_pred CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHH
Q 006672 91 PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPN-RLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVH 169 (636)
Q Consensus 91 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 169 (636)
+.+..+|..++. +.+.|++++|..+|+++.+. .|+ ...|...+..+.+.|+++.|..+|+++++.. |++..|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 447778888887 47788888888888888763 354 4457777777778888888888888887753 56666666
Q ss_pred HHHHH-HhcCChHHHHH----HHhhCCC-CCC-CCChhhHHHHHHHHHh---------cCChHHHHHHHhhCCC-CCh--
Q 006672 170 LADMY-VQLGKTRGAFK----VFDETPE-KNK-SESVLLWNVLINGCSK---------IGYLRKAVELFGMMPK-KNV-- 230 (636)
Q Consensus 170 li~~~-~~~g~~~~A~~----~~~~m~~-~~~-~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~-~~~-- 230 (636)
++... ...|+.++|.+ +|+.... .|. +++...|...+....+ .|++++|..+|++... |+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66433 34566666654 5554432 122 2345667666665544 5666677777766553 211
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH------HC---CCCCCH----
Q 006672 231 -ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQML------DA---GVRAND---- 296 (636)
Q Consensus 231 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~------~~---g~~p~~---- 296 (636)
..|..........|. ..+..++. ...+++..|..++.++. +. .++|+.
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~ 226 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQE 226 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCH
T ss_pred HHHHHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhH
Confidence 122222111111110 11111111 12345677777776632 11 134442
Q ss_pred ----HHHHHHHHHHHhc----CCc----HHHHHHHHHHHHcCCCCchhHHHHHhhHHhh-------cCCHH-------HH
Q 006672 297 ----FTVVSALSACAKV----GAL----EAGVRVHNYISCNDFGLKGAIGTALVDMYAK-------CGNIE-------AA 350 (636)
Q Consensus 297 ----~t~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A 350 (636)
..|...+...... ++. ..+..+|+.+++.. |.++.+|..++..+.+ .|+++ +|
T Consensus 227 ~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 227 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 3444443322221 232 36777888888764 6678899999888876 79987 89
Q ss_pred HHHHhhccC---C-ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 351 SLVFGETKE---K-DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 351 ~~~~~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
..+|++..+ | +...|..++..+.+.|++++|..+|+++++ ..|+. ..|..++..+.+.|++++|.++|++..
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999998764 3 577899999999999999999999999999 66763 478888888889999999999999998
Q ss_pred hhcCCCC-ChhHHHHHHHH-HHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 425 FDYFIEP-SVKHHTVVVNL-LSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 425 ~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+ ..| +...|...+.+ +...|+.++|..+|+++. +..|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 384 ~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al----~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 384 E---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGL----KKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp T---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred h---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHH----HHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 5 233 34444433333 346899999999999665 4579999999999999999999999999999998864
No 29
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=5.2e-14 Score=156.57 Aligned_cols=373 Identities=9% Similarity=0.102 Sum_probs=212.9
Q ss_pred HHHHHHHhhcCCChHHHHHHhccCC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH
Q 006672 66 TTQLISSASLHKSIDYALSIFDHFT-PK-----NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSV 139 (636)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~f~~~~-~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 139 (636)
....+..|+..|.+.+|+++++++. .+ +....|.++....+. +..+..++..+... ....-+...+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHHHHH
Confidence 3455556666666666666666544 11 223455555554444 33444444433321 1123344555
Q ss_pred HccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHH
Q 006672 140 ASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAV 219 (636)
Q Consensus 140 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 219 (636)
...|.+++|..+|++.. ......+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 66666677766666641 111111222 225566677766666543 3556666777777777777777
Q ss_pred HHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 006672 220 ELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDF 297 (636)
Q Consensus 220 ~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 297 (636)
+.|.+. .|...|..++..+.+.|++++|.+.|....+ ++....+.++.+|++.+++++.... .+ .|+..
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~---~~n~a 1196 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN---GPNNA 1196 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh---CCCHH
Confidence 776554 5555666667777777777777777654332 2222233466666666666643222 11 33445
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCC
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGR 377 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (636)
.+..+...|...|++++|..+|..+ ..|..++..|.+.|++++|.+.+++. .+..+|..+..+|...|+
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhH
Confidence 5556666666777777777777653 35666777777777777777777665 345666666666666666
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh--cCCchHHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSR--VGQDSQGYQ 454 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~--~g~~~~A~~ 454 (636)
+..|...... +..++..+..++..|...|.+++|+.+++... ++.| ....|+-+..+|.+ -+++.++.+
T Consensus 1266 f~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1266 FRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred HHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6666655443 22244455566667777777777777776654 2333 24455555555554 345555555
Q ss_pred HHHHHHHHHhccCC-----CCchhHHHHHHHHHHcCChhHHHH
Q 006672 455 NSQNSFTKLLQLKP-----KHPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 455 ~~~~~~~~~~~l~p-----~~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
+|... +.+.| .+...|.-+...|.+.|+|+.|..
T Consensus 1338 ~f~~r----ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSR----VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHh----cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 55421 22223 356678888888888888888874
No 30
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.73 E-value=2e-13 Score=152.00 Aligned_cols=404 Identities=12% Similarity=0.070 Sum_probs=302.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhC--CCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCch
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHN--LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQ 111 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 111 (636)
.+..+...+.+.++.++++.++..+ +..+....+.|+....+. +........++...-+ ...+...+...|.++
T Consensus 991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyE 1066 (1630)
T 1xi4_A 991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFE 1066 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHH
Confidence 3344445566999999999998442 223556777777766665 4455555555444222 455778888999999
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
+|..+|++... .....+.++. ..++++.|.++.++. .++.+|..+..++.+.|++++|.+.|.+.
T Consensus 1067 EAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A 1067 EAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence 99999998531 1112222322 677899998888754 34778999999999999999999999664
Q ss_pred CCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHH
Q 006672 192 EKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMIN 269 (636)
Q Consensus 192 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~ 269 (636)
.|...|..++..+.+.|++++|+++|....+ +++...+.++.+|++.+++++..... ..++...|..+..
T Consensus 1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd 1203 (1630)
T 1xi4_A 1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGD 1203 (1630)
T ss_pred -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHH
Confidence 5788899999999999999999999977653 44445556999999999999655443 3556677888999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHH
Q 006672 270 GFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEA 349 (636)
Q Consensus 270 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 349 (636)
.|...|++++|..+|... ..|..+...+.+.|+++.|.+.+... .+..+|..+..++...|++..
T Consensus 1204 ~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A 1204 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred HHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHH
Confidence 999999999999999885 37999999999999999999999876 456888888999999999999
Q ss_pred HHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHH--hcCcHHHHHHHHHHhHhh
Q 006672 350 ASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACW--YSGQVKLALNFFDSMRFD 426 (636)
Q Consensus 350 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~--~~g~~~~a~~~~~~m~~~ 426 (636)
|...... ...+...+..++..|...|.+++|+.+++..+. +.|.. ..|.-+...++ +.++..++.++|..-.
T Consensus 1269 A~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~peklmEhlk~f~~ri-- 1343 (1630)
T 1xi4_A 1269 AQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSRV-- 1343 (1630)
T ss_pred HHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--
Confidence 9998775 334556677899999999999999999988876 55553 35544544444 5567777777776432
Q ss_pred cCCCC------ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH--------hccCCCCchhHHHHHHHHHHcC
Q 006672 427 YFIEP------SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL--------LQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 427 ~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~l~p~~~~~~~~l~~~~~~~g 485 (636)
+++| +...|.-++-+|.+.|+++.|...+-+..... .-..+.|+..|.-.+.-|....
T Consensus 1344 -ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1344 -NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred -ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 4444 46789999999999999999984433111110 1124667888888888887666
No 31
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=4.6e-15 Score=145.18 Aligned_cols=267 Identities=12% Similarity=0.055 Sum_probs=190.6
Q ss_pred HHhcCChHHHHHHHhhCCCCCh----HHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 209 CSKIGYLRKAVELFGMMPKKNV----ASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 209 ~~~~g~~~~A~~~~~~m~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
....|++.+|+..+++....++ .....+..+|...|+++.|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 3456666666666666554332 233445667777777777777776654445667777778888888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CC
Q 006672 285 FQMLDAGVRAN-DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KD 361 (636)
Q Consensus 285 ~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~ 361 (636)
+++...+..|+ ...+..+..++...|++++|.+.++. +.+...+..++..|.+.|+.++|.+.|+++.+ |+
T Consensus 89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 162 (291)
T 3mkr_A 89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED 162 (291)
T ss_dssp HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence 88877665454 44455556777788888888888765 56777888888888888888888888888765 33
Q ss_pred hhcHHHHH----HHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHH
Q 006672 362 LLTWTAMI----WGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHT 437 (636)
Q Consensus 362 ~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 437 (636)
.. ...+. ..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|...|+++.+. -+-++.++.
T Consensus 163 ~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~ 238 (291)
T 3mkr_A 163 AT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLI 238 (291)
T ss_dssp CH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 22 22222 3333458999999999999985 2335678889999999999999999999998852 233578899
Q ss_pred HHHHHHHhcCCchH-HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 438 VVVNLLSRVGQDSQ-GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 438 ~l~~~~~~~g~~~~-A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
.++..+...|+.++ +.+++++ +++++|+++.+. +...+.+.++++..-
T Consensus 239 ~l~~~~~~~g~~~eaa~~~~~~----~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 239 NLVVLSQHLGKPPEVTNRYLSQ----LKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH----HHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHH----HHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 99999999999976 4677764 457799887654 345555566655443
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.72 E-value=3.2e-16 Score=156.32 Aligned_cols=262 Identities=10% Similarity=-0.006 Sum_probs=178.5
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCCh
Q 006672 198 SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEA 277 (636)
Q Consensus 198 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~ 277 (636)
+...|..+...+...|++++|+.+|+++... ...+..+|..+...|...|++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------------------~~~~~~~~~~l~~~~~~~~~~ 71 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA----------------------------APEREEAWRSLGLTQAENEKD 71 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------CTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------------------CCCCHHHHHHHHHHHHHcCCH
Confidence 3445555566666666666666666554310 011234444445555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHH--------------hh-HHh
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTAL--------------VD-MYA 342 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------i~-~~~ 342 (636)
++|...|+++.+.. +.+..++..+...+...|++++|...+..+.+.. +.+...+..+ .. .+.
T Consensus 72 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (327)
T 3cv0_A 72 GLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFA 149 (327)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTT
T ss_pred HHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHH
Confidence 55555555554432 2234444445555555555555555555554432 1122222222 33 477
Q ss_pred hcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 006672 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
..|++++|.+.++++.+ .+...|..+...|...|++++|+..++++.+ ..|+ ..++..+...+...|++++|..
T Consensus 150 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~ 227 (327)
T 3cv0_A 150 APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVE--LRPDDAQLWNKLGATLANGNRPQEALD 227 (327)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 78889999999888764 4677889999999999999999999999988 4454 6688889999999999999999
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC------------CchhHHHHHHHHHHcCC
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK------------HPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~------------~~~~~~~l~~~~~~~g~ 486 (636)
.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. ++.|. ++..|..++.+|...|+
T Consensus 228 ~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 228 AYNRALDI--NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI----YMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99998852 23457889999999999999999999998665 45676 68899999999999999
Q ss_pred hhHHHHHHHHH
Q 006672 487 WKDVARVRTLM 497 (636)
Q Consensus 487 ~~~A~~~~~~m 497 (636)
+++|..++++.
T Consensus 302 ~~~A~~~~~~~ 312 (327)
T 3cv0_A 302 PDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.69 E-value=8.2e-15 Score=154.45 Aligned_cols=368 Identities=10% Similarity=-0.040 Sum_probs=181.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCC------------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-----C-
Q 006672 63 SRITTQLISSASLHKSIDYALSIFDHFT------------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRL-----S- 124 (636)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g- 124 (636)
...||.|...|...|+.++|++.|++.. +...++|+.+...|...|++++|...|++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 4456666666666666666666554321 123345566666666666666666666554331 0
Q ss_pred CCCC-cccHHHHHHHHHc--cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH---HhcCChHHHHHHHhhCCCCCCCCC
Q 006672 125 VRPN-RLTYPFVSKSVAS--LSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMY---VQLGKTRGAFKVFDETPEKNKSES 198 (636)
Q Consensus 125 ~~p~-~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~ 198 (636)
..++ ..++.....++.. .+++++|...|++.++.. +.++..+..+..++ ...++.++|.+.|++..+.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 0111 1222222222222 234555555555555543 22233333333332 22344444555444433222 333
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhhHHHHHHHHHhCC
Q 006672 199 VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMP---EKGVVSWTAMINGFSQNG 275 (636)
Q Consensus 199 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g 275 (636)
..++..+...+...+ ...|+.++|.+.+++.. ..+..++..+...|...|
T Consensus 209 ~~~~~~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 261 (472)
T 4g1t_A 209 QYLKVLLALKLHKMR---------------------------EEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261 (472)
T ss_dssp HHHHHHHHHHHHHCC---------------------------------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHH---------------------------hhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcC
Confidence 333433333332221 11233444444444432 122444555555555555
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCcHHHHHHHHHHHHcCCCCchhHHHH
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAK-------------------VGALEAGVRVHNYISCNDFGLKGAIGTA 336 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (636)
++++|+..|++..+.. +-+..++..+..++.. .+..+.|...+..+.+.. +.+...+..
T Consensus 262 ~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 339 (472)
T 4g1t_A 262 EPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSI 339 (472)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHH
T ss_pred chHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhhh
Confidence 5555555555555432 2223333333332211 123567777787777665 566777888
Q ss_pred HhhHHhhcCCHHHHHHHHhhccC--CChh----cHHHHHH-HHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh
Q 006672 337 LVDMYAKCGNIEAASLVFGETKE--KDLL----TWTAMIW-GLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 409 (636)
+...|...|++++|...|++..+ ++.. .+..+.. .+.+.|+.++|+..|++.++ +.|+.......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~~------ 411 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEKM------ 411 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHHH------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHHH------
Confidence 99999999999999999998764 3322 2333332 23467999999999999998 77775433222
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
.+.+.++++..... -+.++..|..++.+|...|++++|.+.|+++. ++.|.+|.++.-++
T Consensus 412 ---~~~l~~~~~~~l~~--~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL----e~~~~~p~a~~~~G 471 (472)
T 4g1t_A 412 ---KDKLQKIAKMRLSK--NGADSEALHVLAFLQELNEKMQQADEDSERGL----ESGSLIPSASSWNG 471 (472)
T ss_dssp ---HHHHHHHHHHHHHH--CC-CTTHHHHHHHHHHHHHHCC----------------------------
T ss_pred ---HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCCCcHhhcCC
Confidence 23445556655531 24568899999999999999999999999665 66777776665443
No 34
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.2e-15 Score=152.02 Aligned_cols=149 Identities=13% Similarity=0.086 Sum_probs=94.8
Q ss_pred HHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHH
Q 006672 306 CAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAI 382 (636)
Q Consensus 306 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 382 (636)
+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.++++.+ .+..+|..+...|...|++++|+
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 344455555555555555443 33455555566666666666666666655442 34556677777777777777777
Q ss_pred HHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-------------ChhHHHHHHHHHHhcCC
Q 006672 383 QYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-------------SVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 383 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-------------~~~~~~~l~~~~~~~g~ 448 (636)
..|+++.+ ..|+ ..++..+...+...|++++|.+.++++.+. .| +...|..++.+|.+.|+
T Consensus 227 ~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 227 DAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 77777766 3343 556667777777777777777777777642 22 35677777788888888
Q ss_pred chHHHHHHHHHH
Q 006672 449 DSQGYQNSQNSF 460 (636)
Q Consensus 449 ~~~A~~~~~~~~ 460 (636)
+++|.++++++.
T Consensus 302 ~~~A~~~~~~~l 313 (327)
T 3cv0_A 302 PDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCCS
T ss_pred HHHHHHHHHHHH
Confidence 888887777444
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=2.4e-17 Score=177.60 Aligned_cols=127 Identities=8% Similarity=-0.004 Sum_probs=87.5
Q ss_pred chHHHHHHHHHhCCCchHHHHHHHHhHH---CCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006672 95 HIFNVLIRGLAENSHFQSCISHFVFMLR---LSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLA 171 (636)
Q Consensus 95 ~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 171 (636)
.+||+||.+|++.|+.++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|+.|.+.|+.||+.|||+||
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4677777777777777777777766543 3667777777777777777777777777777777777777777777777
Q ss_pred HHHHhcCCh-HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 006672 172 DMYVQLGKT-RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVEL 221 (636)
Q Consensus 172 ~~~~~~g~~-~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 221 (636)
+++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+.+-++.+.++
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 777777763 56677777777777777777777777666555433333333
No 36
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=4.6e-17 Score=175.45 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=127.2
Q ss_pred ChhHHHHHHHHhhcCCChHHHHHHhccCC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 006672 62 SSRITTQLISSASLHKSIDYALSIFDHFT-------PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPF 134 (636)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 134 (636)
-..+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34589999999999999999999997653 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCC-CCChhhHHHHHHHHHhc
Q 006672 135 VSKSVASLSLL-SLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNK-SESVLLWNVLINGCSKI 212 (636)
Q Consensus 135 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~li~~~~~~ 212 (636)
+|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+.+-++...++..++.-... +|.+.+...|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 78999999999999999999999999888777666666555444432111 12244555566666665
Q ss_pred C
Q 006672 213 G 213 (636)
Q Consensus 213 g 213 (636)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 5
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.2e-14 Score=137.51 Aligned_cols=223 Identities=9% Similarity=0.055 Sum_probs=178.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC--Cc----hhHH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG--LK----GAIG 334 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~ 334 (636)
...|..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+..+.+.... ++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456777778888888888888888887765 66777777888888888888888888877764311 11 5777
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG 411 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 411 (636)
..+...|.+.|++++|...|+++.+ ++ ...+...|++++|+..++++.. ..|+ ...+..+...+...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 8888888888888888888888765 33 2456677889999999999988 5565 457778888899999
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
++++|...++++.+. .+.+...|..++.+|.+.|++++|.+.++++. +++|.++.+|..++.+|...|++++|.
T Consensus 154 ~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----~~~~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI----EKDPNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999998852 23457889999999999999999999998665 568999999999999999999999999
Q ss_pred HHHHHHHhC
Q 006672 492 RVRTLMQRR 500 (636)
Q Consensus 492 ~~~~~m~~~ 500 (636)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988774
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.63 E-value=9.5e-15 Score=136.45 Aligned_cols=190 Identities=13% Similarity=0.060 Sum_probs=121.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHc
Q 006672 299 VVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (636)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 375 (636)
+..+...+...|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++..+ .+...|..+...+...
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 86 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVAL 86 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence 3333333444444444444444444332 33344444444444444444444444444332 2334455555555555
Q ss_pred -----------CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 376 -----------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 376 -----------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
|++++|+..|++..+ ..|+ ...+..+..++...|++++|+..|++..+ .. .++..+..++.+|
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 87 YRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALA-LE--DTPEIRSALAELY 161 (217)
T ss_dssp HHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC--CCHHHHHHHHHHH
T ss_pred hhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHh-cc--cchHHHHHHHHHH
Confidence 899999999999998 5676 56788888899999999999999999986 33 7788999999999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
...|++++|.+.++++. +++|+++..+..++.++...|++++|...+++..
T Consensus 162 ~~~g~~~~A~~~~~~al----~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKAL----EQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHcCCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999998655 6799999999999999999999999999887653
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.62 E-value=6.4e-14 Score=135.66 Aligned_cols=247 Identities=10% Similarity=0.018 Sum_probs=173.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN--DFTVVSALSAC 306 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~ 306 (636)
.+......+...|++++|...|++..+ .+...|..+...|...|++++|+..|++..+.+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556667777777777777776543 2355788888888888888888888888887432222 33477778888
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888765 45667888888888888888888888888775 345667777733444568888888
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCc---HHHHHHHHHHhHhhcCCCCC------hhHHHHHHHHHHhcCCchHHH
Q 006672 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQ---VKLALNFFDSMRFDYFIEPS------VKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 384 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~ 453 (636)
.|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+...-.|+ ...|..++..|.+.|++++|.
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887 4555 4566667777777777 77788888777653322343 256777888888888888888
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
+.++++. +++|+++.++..+.......+
T Consensus 242 ~~~~~al----~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 242 AAWKNIL----ALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHH----HHCTTCHHHHHHHC-------
T ss_pred HHHHHHH----hcCccHHHHHHHhhhhhcccc
Confidence 8887554 568888877777766554443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=1e-13 Score=134.29 Aligned_cols=238 Identities=8% Similarity=-0.149 Sum_probs=176.3
Q ss_pred cCCHHHHHHHHhhCCCC-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHH
Q 006672 243 KGDLKKAGELFEQMPEK-------GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 243 ~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
.|++++|...|+++.+. +..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45677777777765542 25678888888888888888888888888753 44677888888888888888888
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT 393 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 393 (636)
...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ |+.......+..+...|++++|+..+++.... .
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C
Confidence 88888888764 45678888888899999999999999988764 44333444445556679999999999888774 2
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 394 EPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
.++...+ .++..+...++.++|...++.... ..|+ ...+..++..|.+.|++++|.+.++++. +++|
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al----~~~p 246 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV----ANNV 246 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----TTCC
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCCc
Confidence 2333333 466677788888999999988763 2232 5788899999999999999999998554 6677
Q ss_pred CCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 469 KHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 469 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
.+.. ..+.++...|++++|.+.+
T Consensus 247 ~~~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HNFV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TTCH---HHHHHHHHHHHHHHC----
T ss_pred hhHH---HHHHHHHHHHHHHhhHHHH
Confidence 6644 4466788889999888765
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=2.7e-13 Score=139.43 Aligned_cols=226 Identities=12% Similarity=0.054 Sum_probs=145.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCC--------------------cHHHHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGA--------------------LEAGVR 317 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~--------------------~~~a~~ 317 (636)
+|..+...|...|++++|+..+++..+. +-.+ ...++..+...+...|+ ++.|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4445555555555555555555554431 0000 12244445555555555 566665
Q ss_pred HHHHHHHc----C-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHH
Q 006672 318 VHNYISCN----D-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 318 ~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~ 383 (636)
.+....+. + .+....++..+...|...|++++|...|++..+ ++ ..+|..+...|...|++++|+.
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 55554431 1 111234566777777778888888777776653 12 2377888888889999999999
Q ss_pred HHHHHhHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHH
Q 006672 384 YFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 384 ~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
.+++..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|.+.|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99887652 11111 346777888899999999999999887642211222 5678889999999999999999
Q ss_pred HHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChh
Q 006672 455 NSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 455 ~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~ 488 (636)
.++++.+..-+.. |....++..++.+|...|+..
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 9998876554442 334567888888888888664
No 42
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.54 E-value=4.6e-13 Score=139.76 Aligned_cols=341 Identities=11% Similarity=0.035 Sum_probs=183.7
Q ss_pred HHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC--
Q 006672 139 VASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKT---RGAFKVFDETPEKNKSESVLLWNVLINGCSKIG-- 213 (636)
Q Consensus 139 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-- 213 (636)
+.+.|++++|.+.+....+.| ++..+..|..+|...|+. ++|...|++..+ .+...+..+...+...|
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----TSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----CCHHHHHHHHHHHHhCCCC
Confidence 334445555555555554443 122222333334444444 555555554442 13344444444333333
Q ss_pred ---ChHHHHHHHhhCCCC-ChHHHHHHHHHHHhcCCHHH---HHHHHhhCCC-CChhhHHHHHHHHHhCCChHHHHHHHH
Q 006672 214 ---YLRKAVELFGMMPKK-NVASWVSLIDGFMRKGDLKK---AGELFEQMPE-KGVVSWTAMINGFSQNGEAEKALAMFF 285 (636)
Q Consensus 214 ---~~~~A~~~~~~m~~~-~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~ 285 (636)
++++|+..|++...+ +...+..|...|...+..++ +.+.+..... .+...+..+...|...+.++++.....
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~ 165 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVE 165 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHH
T ss_pred CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHH
Confidence 445555555544422 22344444444444333222 2222222221 234555556666666664444433322
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc----CCHHHHHHHHhhcc
Q 006672 286 QMLDAGVRANDFTVVSALSACAKVG---ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC----GNIEAASLVFGETK 358 (636)
Q Consensus 286 ~m~~~g~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~ 358 (636)
...+.-...+...+..+...+...| +.++|...+....+.| +++...+..|..+|... ++.++|...|++..
T Consensus 166 ~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 166 RICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 2222111111225555555666666 6666666666666665 44444445555555443 67788888887776
Q ss_pred CCChhcHHHHHHH-H--HHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHHhHhhcCCC
Q 006672 359 EKDLLTWTAMIWG-L--AIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG-----QVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 359 ~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~ 430 (636)
..+...+..+... | ...+++++|+..|++..+.| +...+..+...|. .| ++++|.++|++.. .
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~ 315 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----G 315 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----T
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----C
Confidence 4456677777766 3 45788889999998888765 4556666666665 45 8899999888664 4
Q ss_pred CChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 431 PSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 431 p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
-++..+..|..+|.. ..++++|...|+++.+ +.++.....|+.+|.. ..+.++|..++++..+.|.
T Consensus 316 g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 316 REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR------NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT------TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh------hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 456777788887776 3488999999987763 4567788899998885 3578899999999988774
No 43
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=4.3e-13 Score=128.42 Aligned_cols=235 Identities=13% Similarity=0.030 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----HHHHHHHH
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPE--KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAG--VRAN----DFTVVSAL 303 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~t~~~ll 303 (636)
.+..+...+...|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+.. ..|+ ..++..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 455555666666666666666654422 456677888888888888888888888877632 1122 46777777
Q ss_pred HHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHH
Q 006672 304 SACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 380 (636)
..+...|++++|...+..+.+.. |+ ...+.+.|++++|...++++... +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHH
Confidence 88888888888888888887754 33 23466678888898888887653 45678889999999999999
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 381 AIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
|+..|+++.+. .|+ ..++..+..++...|++++|...++...+. .+.+...|..++..|.+.|++++|.+.++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999884 444 678888999999999999999999999852 2345788999999999999999999999976
Q ss_pred HHHH--hccCCCCchhHHHHHH
Q 006672 460 FTKL--LQLKPKHPSSYVLLSN 479 (636)
Q Consensus 460 ~~~~--~~l~p~~~~~~~~l~~ 479 (636)
.+.. ....|.+...+..+..
T Consensus 234 ~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 234 RTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhChhhcCCCchHHHHHHHHH
Confidence 6432 1112766666665544
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.53 E-value=6.6e-12 Score=121.61 Aligned_cols=222 Identities=10% Similarity=-0.026 Sum_probs=159.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHcCCCCchhHHHH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK----VGALEAGVRVHNYISCNDFGLKGAIGTA 336 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 336 (636)
..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ ++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 4556666666667777777777777666632 34455556666666 677777777777766654 5566666
Q ss_pred HhhHHhh----cCCHHHHHHHHhhccC-CChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Q 006672 337 LVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTAC 407 (636)
Q Consensus 337 li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 407 (636)
+..+|.. .+++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 7777777 7777777777776654 356677777777777 788888888888888754 455666666777
Q ss_pred Hh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 408 WY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 408 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
.. .+++++|...|++..+ . .++..+..+..+|.. .+++++|.+.++++.+ .+| +..+..|+.
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~~--~~a~~~l~~ 226 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACE----LEN--GGGCFNLGA 226 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH----TTC--HHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh----CCC--HHHHHHHHH
Confidence 76 7888888888888774 2 245677778888888 8888888888886653 333 667888888
Q ss_pred HHHH----cCChhHHHHHHHHHHhCC
Q 006672 480 IYAA----EGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 480 ~~~~----~g~~~~A~~~~~~m~~~g 501 (636)
+|.. .|++++|.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888 888888888888888765
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=2.3e-12 Score=123.09 Aligned_cols=201 Identities=13% Similarity=0.001 Sum_probs=113.4
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.+..+.+.. +.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 103 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SR----------- 103 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC-----------
Confidence 3456666666666666666666666665542 2244445555555555555555555555554432 22
Q ss_pred HhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 006672 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+...+...|++++|...
T Consensus 104 --------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 104 --------------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334455555555555666666666665555323343 33555555566666666666666
Q ss_pred HHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 420 FDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 420 ~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
++++.+. .+.+...+..++.+|.+.|++++|.+.++++ ++..|.+...+..++.+|...|++++|.+.++++.+
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLF----AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6665531 1223555666666666666666666666543 345666666666666666666666666666666655
Q ss_pred C
Q 006672 500 R 500 (636)
Q Consensus 500 ~ 500 (636)
.
T Consensus 238 ~ 238 (252)
T 2ho1_A 238 L 238 (252)
T ss_dssp H
T ss_pred H
Confidence 3
No 46
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=7.4e-13 Score=123.51 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=132.2
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...|..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+++.. |.+...+..+...
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 4455666666666667777776666666542 3345566666666666677777777766666654 4456666666777
Q ss_pred Hhhc-----------CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH
Q 006672 341 YAKC-----------GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA 406 (636)
Q Consensus 341 ~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 406 (636)
|.+. |++++|...|++..+ .+...|..+...|...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 7776 888888888887764 356788888889999999999999999998866 667788888889
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+...|++++|...|++..+ ..| +...+..+..++.+.|++++|.+.+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALE---QAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999998875 334 5778888899999999999999888744
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.52 E-value=1.6e-12 Score=125.67 Aligned_cols=233 Identities=10% Similarity=0.000 Sum_probs=189.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc--hhHHHHHhh
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK--GAIGTALVD 339 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~ 339 (636)
..+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+..+.+.+..++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345567788999999999999999999864 33445788888899999999999999999998432222 334889999
Q ss_pred HHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHH
Q 006672 340 MYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKL 415 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 415 (636)
.|...|++++|...|++..+ .+..+|..+...|...|++++|+..|++..+ ..|+ ...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765 4667999999999999999999999999988 4666 4566666635555669999
Q ss_pred HHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCC-----chhHHHHHHHHHHcCC
Q 006672 416 ALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKH-----PSSYVLLSNIYAAEGR 486 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~-----~~~~~~l~~~~~~~g~ 486 (636)
|.+.|+++.+ ..|+ ...+..+..++...|+ +++|...++++.+.... .|.. ..+|..++..|...|+
T Consensus 161 A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 236 (272)
T 3u4t_A 161 ADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAP-GGAKYKDELIEANEYIAYYYTINRD 236 (272)
T ss_dssp HHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHcCC
Confidence 9999999986 3344 7788889999999998 99999999988765422 2331 2688899999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 006672 487 WKDVARVRTLMQRRS 501 (636)
Q Consensus 487 ~~~A~~~~~~m~~~g 501 (636)
+++|.+.++++.+..
T Consensus 237 ~~~A~~~~~~al~~~ 251 (272)
T 3u4t_A 237 KVKADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999998854
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.52 E-value=6.7e-13 Score=134.36 Aligned_cols=227 Identities=10% Similarity=0.082 Sum_probs=181.8
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHcCCCCchhHHHHHhh
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-LEAGVRVHNYISCNDFGLKGAIGTALVD 339 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (636)
...|+.+...+.+.|++++|+..|++.+... +-+...|..+..++...|+ +++|...++.+++.. +.+..+|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777777888888888888888887753 3356677777777778885 888888888888765 567778888888
Q ss_pred HHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh-cCcHH
Q 006672 340 MYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY-SGQVK 414 (636)
Q Consensus 340 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 414 (636)
+|.+.|++++|...|+++.+ .+..+|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 88888888888888887764 5677899999999999999999999999998 5665 5688888888888 56657
Q ss_pred HH-----HHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcC--CchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC-
Q 006672 415 LA-----LNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVG--QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG- 485 (636)
Q Consensus 415 ~a-----~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g- 485 (636)
+| +..|++.++ +.| +...|..+..+|.+.| ++++|.+.++++ +.+|+++.++..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-----~~~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-----QPSHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-----TTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-----ccCCCCHHHHHHHHHHHHHHhc
Confidence 77 588888875 445 4778999999999988 689998888643 678999999999999999975
Q ss_pred --------ChhHHHHHHHHH-Hh
Q 006672 486 --------RWKDVARVRTLM-QR 499 (636)
Q Consensus 486 --------~~~~A~~~~~~m-~~ 499 (636)
..++|.++++++ .+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHT
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 258999999998 55
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=3.7e-13 Score=127.67 Aligned_cols=209 Identities=11% Similarity=0.047 Sum_probs=107.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
..+|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 4556667777777777777777777777642 3355666666666677777777777777666553 3445555556666
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHH
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLA 416 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a 416 (636)
|...|++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+. .| +...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666555442 24445555555666666666666666665552 22 244555555555556666666
Q ss_pred HHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHH
Q 006672 417 LNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 417 ~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~ 479 (636)
...++++.+. .+.+...+..++.+|.+.|++++|.+.++++. +++|+++..+..+..
T Consensus 179 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 179 LSQFAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAI----DIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH----HHCTTCHHHHHHHTC
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHH----ccCcchHHHHHHHHH
Confidence 6666555531 12234555555566666666666665555333 345555555544443
No 50
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.51 E-value=3.4e-13 Score=130.61 Aligned_cols=224 Identities=13% Similarity=-0.012 Sum_probs=183.6
Q ss_pred HhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH
Q 006672 272 SQNGEAEKALAMFFQMLDAGVR---ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE 348 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 348 (636)
...|++++|+..|+++.+.... .+..++..+...+...|++++|...+..+++.. +.+..++..+...|...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 4568899999999999986321 245678888889999999999999999999875 567889999999999999999
Q ss_pred HHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 349 AASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 349 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
+|...|+++.+ .+..+|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++....
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99999998875 4678999999999999999999999999998 567665555555666778999999999988875
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
. .+++...+ .++..+...++.++|.+.++++.+......|.++..|..++.+|...|++++|...++++.+..
T Consensus 173 ~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 K--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp H--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred c--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 3 23444444 4777788888889999998866543333334457899999999999999999999999998854
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=3.4e-12 Score=121.85 Aligned_cols=207 Identities=12% Similarity=0.048 Sum_probs=147.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 230 VASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 230 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56788999999999999999999998753 357789999999999999999999999998764 34566777777777
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFK 386 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (636)
...|++++|...+..+.+.+..|+ +...|..+...|...|++++|+..|+
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~ 165 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPE------------------------------RSRVFENLGLVSLQMKKPAQAKEYFE 165 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTT------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcc------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777777777777777665211111 22344555566666667777777777
Q ss_pred HHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Q 006672 387 KMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ 465 (636)
Q Consensus 387 ~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 465 (636)
++.+. .|+ ...+..+...+...|++++|..+++.+.+ ..+.+...+..+...+.+.|++++|.+.++++. +
T Consensus 166 ~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~----~ 237 (252)
T 2ho1_A 166 KSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQ--GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLK----R 237 (252)
T ss_dssp HHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----H
T ss_pred HHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHH----H
Confidence 66663 333 55666677777777777777777777764 223446667777777778888888877777554 4
Q ss_pred cCCCCchhHH
Q 006672 466 LKPKHPSSYV 475 (636)
Q Consensus 466 l~p~~~~~~~ 475 (636)
+.|+++....
T Consensus 238 ~~p~~~~~~~ 247 (252)
T 2ho1_A 238 LYPGSLEYQE 247 (252)
T ss_dssp HCTTSHHHHH
T ss_pred HCCCCHHHHH
Confidence 5676655443
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.51 E-value=1.2e-12 Score=132.60 Aligned_cols=243 Identities=8% Similarity=-0.008 Sum_probs=185.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006672 231 ASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGE-AEKALAMFFQMLDAGVRANDFTVVSALSAC 306 (636)
Q Consensus 231 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 306 (636)
..|..+...+.+.|++++|+..|+++.. .+..+|+.+...+...|+ +++|+..|++..... +-+...|..+..++
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 4555666666666777777777766542 346678888888888886 888888888888753 33667777788888
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHH-cCChHHH-
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAI-HGRYEQA- 381 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~g~~~~A- 381 (636)
...|++++|...++.+++.. +.+...|..+..++.+.|++++|...|+++.+ .+...|+.+..++.. .|..++|
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 88888888888888888765 66778888888888888888888888888775 466788888888888 6665777
Q ss_pred ----HHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC-------
Q 006672 382 ----IQYFKKMMYSGTEPD-GTVFLAILTACWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG------- 447 (636)
Q Consensus 382 ----~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g------- 447 (636)
+..|++.++ +.|+ ...|..+...+...| ++++|.+.+..+ + ..+.+...+..++++|.+.|
T Consensus 256 ~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 256 LEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 588999988 6676 568888888888888 689999988877 2 22345778889999999875
Q ss_pred --CchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 448 --QDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 448 --~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
.+++|.++++++. .+++|.....|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~---~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILA---KEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHH---HTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHhCchhHHHHHHHHHHHHH
Confidence 2588888887541 57899988999888776654
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.51 E-value=9.4e-12 Score=120.53 Aligned_cols=220 Identities=11% Similarity=-0.012 Sum_probs=173.1
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPEK-GVVSWTAMINGFSQ----NGEAEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
++.++..+...|...|++++|...|++..++ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 4455566666666667777777777665544 35677777888888 888888888888888765 566777777
Q ss_pred HHHHh----cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh----cCCHHHHHHHHhhccC-CChhcHHHHHHHHHH
Q 006672 304 SACAK----VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAASLVFGETKE-KDLLTWTAMIWGLAI 374 (636)
Q Consensus 304 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~ 374 (636)
..+.. .+++++|...++...+.+ +...+..+..+|.. .++.++|...|++..+ .+..++..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 77877 888888888888888764 66777888888888 8889999888887765 456678888888888
Q ss_pred ----cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh-
Q 006672 375 ----HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR- 445 (636)
Q Consensus 375 ----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~- 445 (636)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+ .+ +...+..+..+|.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-LE---NGGGCFNLGAMQYNG 231 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-CC---CHHHHHHHHHHHHcC
Confidence 899999999999998853 45677778888888 9999999999999885 22 26778889999998
Q ss_pred ---cCCchHHHHHHHHHHH
Q 006672 446 ---VGQDSQGYQNSQNSFT 461 (636)
Q Consensus 446 ---~g~~~~A~~~~~~~~~ 461 (636)
.|++++|.+.++++.+
T Consensus 232 ~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHH
Confidence 9999999999997664
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.50 E-value=3.3e-12 Score=133.29 Aligned_cols=339 Identities=12% Similarity=-0.003 Sum_probs=153.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCh---HHHHHHhccCCCCCcchHHHHHHHHHhCC--
Q 006672 34 IISLIHSSNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKSI---DYALSIFDHFTPKNLHIFNVLIRGLAENS-- 108 (636)
Q Consensus 34 ~~~~l~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g-- 108 (636)
+.......+++++|.+++....+.| ++.++..|-.+|...|+. ++|...|++....++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence 3344444456777888887777765 333444555566666666 77777777666556666666666555554
Q ss_pred ---CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---
Q 006672 109 ---HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLS---LGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGK--- 179 (636)
Q Consensus 109 ---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 179 (636)
++++|+..|++..+.|. ...+..|...+...+..+ .+.+.+....+.| ++.....|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 56677777777776542 224555555554443322 2334444444333 33455556666666653
Q ss_pred -hHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcC---ChHHHHHHHhhCCC---CChHHHHHHHHHHHhc----CCHHH
Q 006672 180 -TRGAFKVFDETPEKNKSESVLLWNVLINGCSKIG---YLRKAVELFGMMPK---KNVASWVSLIDGFMRK----GDLKK 248 (636)
Q Consensus 180 -~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~----g~~~~ 248 (636)
.+.+..+++... ..+..++..|...|...| +.++|++.|++..+ ++...+..|..+|... ++.++
T Consensus 160 ~~~~a~~~~~~a~----~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 160 HLDDVERICKAAL----NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GHHHHHHHHHHHT----TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 333333444433 223335555666665565 55555555554431 2222223444444332 34455
Q ss_pred HHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC
Q 006672 249 AGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFG 328 (636)
Q Consensus 249 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (636)
|...|++....+...+..+...|. .....++.++|...+....+.|
T Consensus 236 A~~~~~~aa~g~~~a~~~Lg~~~~--------------------------------~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 236 AQALLEKIAPGYPASWVSLAQLLY--------------------------------DFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp HHHHHHHHGGGSTHHHHHHHHHHH--------------------------------HSGGGCCHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH--------------------------------hCCCCCCHHHHHHHHHHHHHCC--
Confidence 555554444112334444443311 0023444444544444444433
Q ss_pred CchhHHHHHhhHHhhcC-----CHHHHHHHHhhccCCChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCCCHHH
Q 006672 329 LKGAIGTALVDMYAKCG-----NIEAASLVFGETKEKDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEPDGTV 399 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t 399 (636)
++.....|..+|. .| +.++|.+.|++....+...+..|...|.. ..++++|...|++..+.|. ...
T Consensus 282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A 356 (452)
T 3e4b_A 282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSA 356 (452)
T ss_dssp -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTH
T ss_pred -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHH
Confidence 3334444444444 23 55666666655553344455555554444 2256666666666655442 222
Q ss_pred HHHHHHHHHh----cCcHHHHHHHHHHhH
Q 006672 400 FLAILTACWY----SGQVKLALNFFDSMR 424 (636)
Q Consensus 400 ~~~ll~a~~~----~g~~~~a~~~~~~m~ 424 (636)
...+...|.. ..+.++|..+|+...
T Consensus 357 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 357 DFAIAQLFSQGKGTKPDPLNAYVFSQLAK 385 (452)
T ss_dssp HHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 3333333332 335666666666655
No 55
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.50 E-value=2.2e-13 Score=140.68 Aligned_cols=269 Identities=13% Similarity=0.046 Sum_probs=165.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhhCCC--C-Ch----HHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhhH
Q 006672 201 LWNVLINGCSKIGYLRKAVELFGMMPK--K-NV----ASWVSLIDGFMRKGDLKKAGELFEQMPEK---------GVVSW 264 (636)
Q Consensus 201 ~~~~li~~~~~~g~~~~A~~~~~~m~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~ 264 (636)
.+..+...+...|++++|+..|+++.. | +. .++..+...|...|++++|...|++.... ...+|
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 344455566666777776666665541 1 11 24445555555555555555555443210 12344
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC-CCCchhHHHHHhhHHhh
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND-FGLKGAIGTALVDMYAK 343 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~ 343 (636)
..+...|...|++++|+..|++..+.. .+.+ .+....++..+...|..
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence 444455555555555555554443210 0000 11223344555555666
Q ss_pred cCC-----------------HHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC
Q 006672 344 CGN-----------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD 396 (636)
Q Consensus 344 ~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~ 396 (636)
.|+ +++|.+.+++..+ . ...+|..+...|...|++++|+..+++..+.... ++
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 666 6666655554432 1 2346777888888889999998888887762110 11
Q ss_pred ----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-
Q 006672 397 ----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK- 467 (636)
Q Consensus 397 ----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~- 467 (636)
..++..+...+...|++++|...+++......-.. ....+..++.+|.+.|++++|.+.++++.+..-+..
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 12677788888999999999999988764221111 156788899999999999999999998776543331
Q ss_pred -CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 468 -PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 468 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+....++..++.+|...|++++|.+.+++..+.
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 223458889999999999999999999988763
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.49 E-value=4.5e-12 Score=118.38 Aligned_cols=200 Identities=13% Similarity=0.005 Sum_probs=115.6
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...|..+...|...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~----------- 74 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PD----------- 74 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CC-----------
Confidence 4556666666666666666666666666542 2334455555555555555555555555555432 22
Q ss_pred HhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHc-CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHH
Q 006672 341 YAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
+..+|..+...|... |++++|+..++++.+.+..|+ ...+..+..++...|++++|..
T Consensus 75 --------------------~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 134 (225)
T 2vq2_A 75 --------------------SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134 (225)
T ss_dssp --------------------CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --------------------ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHH
Confidence 334455555555555 666666666666555223333 3455555566666666666666
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC-CCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP-KHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.++++.+. .+.+...+..++.+|.+.|++++|.+.++++. +..| .++..+..++..+...|+.++|..+++.+
T Consensus 135 ~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 135 YLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQ----SRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 66666541 12235566666666666666666666666443 3456 56666666666666667777666666666
Q ss_pred Hh
Q 006672 498 QR 499 (636)
Q Consensus 498 ~~ 499 (636)
.+
T Consensus 209 ~~ 210 (225)
T 2vq2_A 209 QA 210 (225)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=8.6e-12 Score=116.46 Aligned_cols=210 Identities=13% Similarity=0.063 Sum_probs=142.7
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006672 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA 305 (636)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 305 (636)
+...+..+...+...|++++|...|+++.+ .+...|..+...|...|++++|...|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 456788999999999999999999998653 347789999999999999999999999998863 4466777778888
Q ss_pred HHhc-CCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHH
Q 006672 306 CAKV-GALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 306 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
+... |++++|...++.+.+.+..|+ +...|..+...+...|++++|+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPT------------------------------PYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSC------------------------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcc------------------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888 888888888888776211111 123444455555556666666666
Q ss_pred HHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Q 006672 385 FKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKL 463 (636)
Q Consensus 385 ~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 463 (636)
|+++.+ ..|+ ...+..+...+...|++++|..+++.+.+.. ...+...+..+...+...|+.++|..+++.+.
T Consensus 136 ~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--- 209 (225)
T 2vq2_A 136 LKRSLA--AQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ--- 209 (225)
T ss_dssp HHHHHH--HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---
T ss_pred HHHHHH--hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---
Confidence 666655 2333 4455666666666677777777666665411 11345556666666667777777766666433
Q ss_pred hccCCCCchhHHH
Q 006672 464 LQLKPKHPSSYVL 476 (636)
Q Consensus 464 ~~l~p~~~~~~~~ 476 (636)
+..|+++.....
T Consensus 210 -~~~p~~~~~~~~ 221 (225)
T 2vq2_A 210 -ANFPYSEELQTV 221 (225)
T ss_dssp -HHCTTCHHHHHH
T ss_pred -HhCCCCHHHHHH
Confidence 346666554443
No 58
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.48 E-value=1.3e-12 Score=123.89 Aligned_cols=199 Identities=13% Similarity=0.094 Sum_probs=157.4
Q ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHH
Q 006672 294 ANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIW 370 (636)
Q Consensus 294 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 370 (636)
....++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+ .+...|..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 344567777778889999999999999998754 56788999999999999999999999998764 46778999999
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD 449 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~ 449 (636)
.|...|++++|++.++++.+. .| +...+..+...+...|++++|..+++++.+. .+.+...+..++..|.+.|++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 999999999999999999984 34 4668888889999999999999999999852 234678899999999999999
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++|.+.++++. +..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVT----EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH----HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 99999998665 5689999999999999999999999999999998844
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.46 E-value=3.5e-10 Score=122.17 Aligned_cols=428 Identities=9% Similarity=0.005 Sum_probs=287.8
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC---CCCcchHHHHHHHHHhCCC---chHHHHHHHHhH
Q 006672 48 RQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT---PKNLHIFNVLIRGLAENSH---FQSCISHFVFML 121 (636)
Q Consensus 48 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 121 (636)
...++..+... +.|...|..++..+.+.+.++.|+.+|+++. +.....|...+..-.+.++ ++.+..+|++..
T Consensus 52 i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 52 IGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 33445555544 4588999999999999999999999999775 5667789998988888888 999999999998
Q ss_pred HCC-CCCCcccHHHHHHHHHccCCh--------HHHHHHHHHHHHh-CC-CCC-hhHHHHHHHHHH---------hcCCh
Q 006672 122 RLS-VRPNRLTYPFVSKSVASLSLL--------SLGRGLHCLIVKS-GV-EYD-AFVRVHLADMYV---------QLGKT 180 (636)
Q Consensus 122 ~~g-~~p~~~t~~~ll~~~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~li~~~~---------~~g~~ 180 (636)
... ..|+...|..-+....+.++. +..+++|+.++.. |. .++ ...|...+.... ..+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 753 237777777777665554443 3455788877654 65 554 467877776644 24467
Q ss_pred HHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhh-----
Q 006672 181 RGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQ----- 255 (636)
Q Consensus 181 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~----- 255 (636)
+.++++|++........-..+|......--..+. ..+..++.+ ...+++.|...+.+
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHHHH
Confidence 8899999988853222222344332221111111 011111111 00122222232221
Q ss_pred --C----CC----------C--C------hhhHHHHHHHHHhCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006672 256 --M----PE----------K--G------VVSWTAMINGFSQNG-------EAEKALAMFFQMLDAGVRANDFTVVSALS 304 (636)
Q Consensus 256 --~----~~----------~--~------~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 304 (636)
+ +. | + ...|...+.---.++ ..+.+..+|++.+.. ++-+...|...+.
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~ 351 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMAN 351 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHH
Confidence 1 10 0 0 235666655444333 134456778888765 3556777877777
Q ss_pred HHHhcCCcHHHH-HHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------------CC---------
Q 006672 305 ACAKVGALEAGV-RVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-------------KD--------- 361 (636)
Q Consensus 305 ~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------------~~--------- 361 (636)
-+...|+.+.|. .+++..+.. .|.+..++..++...-+.|+++.|.++|+++.. |+
T Consensus 352 ~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~ 430 (679)
T 4e6h_A 352 YQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLK 430 (679)
T ss_dssp HHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhc
Confidence 788889999996 999999864 366777888899999999999999999988764 21
Q ss_pred ---hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhc-CcHHHHHHHHHHhHhhcCCCCChhHHH
Q 006672 362 ---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYS-GQVKLALNFFDSMRFDYFIEPSVKHHT 437 (636)
Q Consensus 362 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~~~~~~ 437 (636)
...|...+....+.|+.+.|..+|.++++.-..+....|......-.+. ++.+.|.++|+...+. .+.+...+.
T Consensus 431 ~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~ 508 (679)
T 4e6h_A 431 SKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYIN 508 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHH
Confidence 2368888888888899999999999998851111233443332222233 4589999999999864 334567778
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP---KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
..++.....|+.+.|..+|+++. ...| .....|..++..-.+.|..+.+..+.+++.+.-.
T Consensus 509 ~y~~fe~~~~~~~~AR~lferal----~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 509 KYLDFLIYVNEESQVKSLFESSI----DKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHT----TTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH----HhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999665 3344 2446788888888899999999999999988643
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=1.2e-12 Score=130.34 Aligned_cols=238 Identities=11% Similarity=0.055 Sum_probs=152.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-----CCchh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDF-----GLKGA 332 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~ 332 (636)
.|..+...|...|++++|+..+++..+. +..| ...++..+...+...|++++|...+....+... .....
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 4445555555555555555555554321 1111 123444445555555566655555555443210 01123
Q ss_pred HHHHHhhHHhhcCC--------------------HHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHH
Q 006672 333 IGTALVDMYAKCGN--------------------IEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQ 383 (636)
Q Consensus 333 ~~~~li~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 383 (636)
++..+...|...|+ +++|.+.+++... + ...++..+...|...|++++|+.
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55556666666666 6666666655432 1 23467778888888999999999
Q ss_pred HHHHHhHcCC-CCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHH
Q 006672 384 YFKKMMYSGT-EPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 384 ~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 454 (636)
.+++..+... .++ ..++..+...+...|++++|..++++......-.++ ...+..++..|...|++++|.+
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9988765210 111 236777788889999999999999887642211122 5677889999999999999999
Q ss_pred HHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 455 NSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 455 ~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++++.+..-... +....++..++.+|...|++++|...++++.+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9998776543322 112457889999999999999999999998874
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.45 E-value=1.6e-12 Score=133.66 Aligned_cols=267 Identities=11% Similarity=0.067 Sum_probs=197.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCC---CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPE---KG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVV 300 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~ 300 (636)
+......+...|++++|...|++... .+ ..+|..+...|...|++++|...|++.... +-.| ...++.
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 34444455555555555555554432 12 346778888899999999999998887542 2222 245677
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC----C-CCchhHHHHHhhHHhhcCC--------------------HHHHHHHHh
Q 006672 301 SALSACAKVGALEAGVRVHNYISCND----F-GLKGAIGTALVDMYAKCGN--------------------IEAASLVFG 355 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~ 355 (636)
.+...+...|++++|...+..+.+.. . .....++..+...|...|+ +++|...++
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 171 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE 171 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 78888999999999999998877531 1 1124578889999999999 999998887
Q ss_pred hccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-CCC----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 006672 356 ETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD----GTVFLAILTACWYSGQVKLALNFFD 421 (636)
Q Consensus 356 ~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~ 421 (636)
+..+ + ...+|..+...|...|++++|+..+++..+... .++ ..++..+...+...|++++|...++
T Consensus 172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 251 (406)
T 3sf4_A 172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7543 1 234788899999999999999999999876211 112 2377888889999999999999999
Q ss_pred HhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHH
Q 006672 422 SMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 422 ~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
+......-.++ ...+..++..|.+.|++++|.+.++++.+..-+.. +....++..++.+|...|++++|.+.++
T Consensus 252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88642211112 56788999999999999999999998876543332 1125688899999999999999999999
Q ss_pred HHHh
Q 006672 496 LMQR 499 (636)
Q Consensus 496 ~m~~ 499 (636)
+..+
T Consensus 332 ~al~ 335 (406)
T 3sf4_A 332 KHLE 335 (406)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=1.7e-12 Score=136.26 Aligned_cols=209 Identities=11% Similarity=0.054 Sum_probs=164.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHh
Q 006672 277 AEKALAMFFQMLDAGVRANDFTVVSALSACAKVGAL-EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 277 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
+++++..+++..... +.+...+..+..++...|++ ++|.+.++.+++.. +.+...+..+...|.+.|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666554432 33566666667777777777 77777777777654 4556777778888888888888888887
Q ss_pred hccC--CChhcHHHHHHHHHHc---------CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc--------CcHHH
Q 006672 356 ETKE--KDLLTWTAMIWGLAIH---------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS--------GQVKL 415 (636)
Q Consensus 356 ~~~~--~~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~--------g~~~~ 415 (636)
+..+ |+...|..+...|... |++++|++.|++..+ ..|+ ...|..+..+|... |++++
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 7664 5566777777888887 999999999999988 5565 66888888888888 99999
Q ss_pred HHHHHHHhHhhcCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHH
Q 006672 416 ALNFFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVA 491 (636)
Q Consensus 416 a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~ 491 (636)
|...|++..+ +.| ++..|..+..+|.+.|++++|.+.++++. +++|+++.++..++.++...|++++|.
T Consensus 240 A~~~~~~al~---~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~l~p~~~~a~~~l~~~~~~lg~~~eAi 312 (474)
T 4abn_A 240 ALSAYAQAEK---VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA----ALDPAWPEPQQREQQLLEFLSRLTSLL 312 (474)
T ss_dssp HHHHHHHHHH---HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986 345 68899999999999999999999998655 679999999999999999999999998
Q ss_pred HHHHH
Q 006672 492 RVRTL 496 (636)
Q Consensus 492 ~~~~~ 496 (636)
+.+.+
T Consensus 313 ~~~~~ 317 (474)
T 4abn_A 313 ESKGK 317 (474)
T ss_dssp HHTTT
T ss_pred HHhcc
Confidence 76543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=2.4e-12 Score=132.75 Aligned_cols=263 Identities=14% Similarity=0.123 Sum_probs=164.1
Q ss_pred HHHHHHHhcCChHHHHHHHhhCCCCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHhhCCC---------CChHHHHH
Q 006672 169 HLADMYVQLGKTRGAFKVFDETPEKNKSESV----LLWNVLINGCSKIGYLRKAVELFGMMPK---------KNVASWVS 235 (636)
Q Consensus 169 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~~~~~~~~ 235 (636)
.+...+...|++++|...|++..+.. +.+. ..|..+...|...|++++|+..|++... ....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34455566666666666666555432 2222 3556666666666666666666655541 12357888
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCC---------ChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 006672 236 LIDGFMRKGDLKKAGELFEQMPEK---------GVVSWTAMINGFSQNGE-----------------AEKALAMFFQMLD 289 (636)
Q Consensus 236 li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~m~~ 289 (636)
+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 899999999999999998876431 13467777778888888 6666666665443
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC---
Q 006672 290 AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD--- 361 (636)
Q Consensus 290 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~--- 361 (636)
. .... ...+....++..+...|...|++++|...|++..+ .+
T Consensus 212 ~----------------------------~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 261 (411)
T 4a1s_A 212 L----------------------------MRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA 261 (411)
T ss_dssp H----------------------------HHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred H----------------------------HHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH
Confidence 1 0000 00011123444555555555666655555555443 11
Q ss_pred -hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC----
Q 006672 362 -LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP---- 431 (636)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p---- 431 (636)
..++..+...|...|++++|+..|++..+.... .+ ..++..+...+...|++++|..++++......-.+
T Consensus 262 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 262 ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 226667777777888888888888777652110 11 34667777788888888888888887764211111
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
....+..+..+|.+.|++++|.+.++++.+.
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1457788889999999999999999866643
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.44 E-value=6e-12 Score=113.85 Aligned_cols=165 Identities=11% Similarity=0.112 Sum_probs=139.2
Q ss_pred CchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHH
Q 006672 329 LKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAIL 404 (636)
Q Consensus 329 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll 404 (636)
.++.+|..+...|.+.|++++|.+.|++..+ .+..+|..+...|.+.|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 3567788888888888999999888888764 4677888999999999999999999999888 4454 55677777
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE 484 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~ 484 (636)
..+...++++.+...+.+..+. .+.+...+..++.+|.+.|++++|++.++++. +++|.++.+|..++.+|.+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l----~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTI----SIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHH----HhcchhhhHHHHHHHHHHHC
Confidence 7888999999999999988752 23457788999999999999999999998554 67999999999999999999
Q ss_pred CChhHHHHHHHHHHhCC
Q 006672 485 GRWKDVARVRTLMQRRS 501 (636)
Q Consensus 485 g~~~~A~~~~~~m~~~g 501 (636)
|++++|.+.+++..+..
T Consensus 155 g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKE 171 (184)
T ss_dssp TCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhCC
Confidence 99999999999998753
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.42 E-value=5e-12 Score=125.89 Aligned_cols=266 Identities=13% Similarity=0.092 Sum_probs=154.2
Q ss_pred HHHHHhcCChHHHHHHHhhCCCCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCH
Q 006672 171 ADMYVQLGKTRGAFKVFDETPEKNKSES----VLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDL 246 (636)
Q Consensus 171 i~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~ 246 (636)
...+...|++++|...|++..+.. +.+ ...|..+...+...|++++|++.+++..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-------------------- 70 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL-------------------- 70 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------
Confidence 344555566666666555554332 222 2344455555555555555555544322
Q ss_pred HHHHHHHhhCCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCC--------
Q 006672 247 KKAGELFEQMPEK--GVVSWTAMINGFSQNGEAEKALAMFFQMLDAG-VRAN----DFTVVSALSACAKVGA-------- 311 (636)
Q Consensus 247 ~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~-------- 311 (636)
.+......+ ...++..+...|...|++++|...+++..+.. -.++ ..++..+...+...|+
T Consensus 71 ----~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 146 (338)
T 3ro2_A 71 ----TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQ 146 (338)
T ss_dssp ----HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC
T ss_pred ----HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhh
Confidence 111111110 12344455555555555555555555543310 0011 2244445555555555
Q ss_pred ------------cHHHHHHHHHHHHc----C-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcH
Q 006672 312 ------------LEAGVRVHNYISCN----D-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTW 365 (636)
Q Consensus 312 ------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~ 365 (636)
++.|...+....+. + .+....++..+...|...|++++|...+++..+ ++ ..++
T Consensus 147 ~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 226 (338)
T 3ro2_A 147 DTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAY 226 (338)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 55555555544321 1 111234566677777788888888877776653 11 2377
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHc----CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHH 436 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~ 436 (636)
..+...|...|++++|+..+++..+. +..+. ..++..+...+...|++++|...+++..+...-.++ ...+
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 306 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRAC 306 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88888888999999999999887652 11111 346777788889999999999999887642211111 4577
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
..+...|.+.|++++|.+.++++.+
T Consensus 307 ~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 307 WSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Confidence 8899999999999999999986653
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=1.4e-10 Score=114.46 Aligned_cols=179 Identities=10% Similarity=0.068 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh-HHHHHhhHHhhcCCHHHHHHHHh
Q 006672 278 EKALAMFFQMLDAGVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA-IGTALVDMYAKCGNIEAASLVFG 355 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~ 355 (636)
++|..+|++..+. +.| +...+..++..+...|++++|..+|+.+++.. +.+.. +|..++..+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5666666666552 122 33455555555556666666666666665532 22232 56666666666666666666666
Q ss_pred hccCC---ChhcHHHHHHHHH-HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC
Q 006672 356 ETKEK---DLLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 356 ~~~~~---~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 430 (636)
+..+. +...|...+.... ..|+.++|..+|++..+ ..|+ ...|..++..+...|++++|..+|++......+.
T Consensus 159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLK--KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 65542 2222322222211 24666666666666665 3343 4456666666666666677776666666421234
Q ss_pred C--ChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 431 P--SVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 431 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
| ....|..++..+.+.|+.++|..+++++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 24566666666666666666666665443
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.36 E-value=1e-11 Score=135.70 Aligned_cols=163 Identities=17% Similarity=0.252 Sum_probs=139.6
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAI 403 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~l 403 (636)
|.+...++.|...|.+.|++++|.+.|++..+ .+..+|+.+..+|.+.|++++|++.|++.++ +.|+ ...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 44567788888888888888888888888764 4567889999999999999999999999988 6677 5688889
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
..++...|++++|++.|++..+ +.|+ ...|..++.+|.+.|++++|++.|+++. +++|+++.+|..|+.+|.
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al----~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTAL----KLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCChHHHhhhhhHHH
Confidence 9999999999999999999885 4454 7889999999999999999999988554 679999999999999999
Q ss_pred HcCChhHHHHHHHHHHh
Q 006672 483 AEGRWKDVARVRTLMQR 499 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~ 499 (636)
..|+|++|.+.++++.+
T Consensus 157 ~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HTTCCTTHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHH
Confidence 99999999998888765
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=1.3e-11 Score=126.06 Aligned_cols=228 Identities=10% Similarity=-0.013 Sum_probs=159.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC--C----CCchhHHH
Q 006672 267 MINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGVRVHNYISCND--F----GLKGAIGT 335 (636)
Q Consensus 267 li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 335 (636)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+....+.. . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776642 1111 22455666666677777777777776665421 1 11234667
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHc----CCCCC-HHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPD-GTVFL 401 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~ 401 (636)
.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..|++..+. +..|+ ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 777888888888888888776653 11 237888889999999999999999988762 23244 45788
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
.+...+...|++++|...+++..+...-.++ ...+..+...|...|+ +++|..++++. ...|.....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-----~~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-----MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-----cCHHHHHHHHH
Confidence 8888999999999999999987642211112 3345778888889998 77777777643 22344556788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.++.+|...|++++|...+++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999998865
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=1.4e-11 Score=121.34 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=172.1
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc------C-
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDA-------GVRANDFTVVSALSACAKVGALEAGVRVHNYISCN------D- 326 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~- 326 (636)
..+|..+...|...|++++|+.+|+++.+. ..+.....+..+...+...|++++|...+..+++. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 568899999999999999999999999873 22334567778888899999999999999988764 2
Q ss_pred CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----------CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc----
Q 006672 327 FGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----------KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---- 391 (636)
Q Consensus 327 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 391 (636)
.+....++..+...|...|++++|...|+++.+ ....++..+...|...|++++|++.|+++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 234567788899999999999999999987653 12346888889999999999999999998774
Q ss_pred --CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc------CCCCC-------hhHHHHHHHHHHhcCCchHHHHH
Q 006672 392 --GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY------FIEPS-------VKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 392 --g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
+..|+ ..++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 22444 3477888889999999999999999988521 11111 12233344455566677777777
Q ss_pred HHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 456 SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 456 ~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
+++.. ...|.++.++..++.+|.+.|++++|.+.+++..+
T Consensus 267 ~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACK----VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcC----CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66443 45677888999999999999999999999998876
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.34 E-value=4.3e-10 Score=110.88 Aligned_cols=218 Identities=11% Similarity=0.041 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCc-------HHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACA-------KVGAL-------EAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
++|...|++..... +-+...|..+...+. ..|++ ++|..+++..++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888752 445666766666654 35886 8999999999974225677799999999999
Q ss_pred cCCHHHHHHHHhhccC--C-Chh-cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH-hcCcHHHHH
Q 006672 344 CGNIEAASLVFGETKE--K-DLL-TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACW-YSGQVKLAL 417 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~-~~g~~~~a~ 417 (636)
.|++++|..+|+++.+ | +.. .|..++..+.+.|++++|..+|++..+. .|+ ...|........ ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876 3 344 8999999999999999999999999984 344 344544433322 379999999
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHcCChhHHHHHHHH
Q 006672 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTL 496 (636)
Q Consensus 418 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 496 (636)
.+|++..+.. +.++..|..+++.+.+.|++++|..+|+++.+.. .+.|+ ....|..++..+.+.|++++|..++++
T Consensus 190 ~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998632 3457899999999999999999999999776320 13453 667899999999999999999999999
Q ss_pred HHhCC
Q 006672 497 MQRRS 501 (636)
Q Consensus 497 m~~~g 501 (636)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 98854
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=2.7e-10 Score=102.40 Aligned_cols=163 Identities=11% Similarity=0.056 Sum_probs=140.8
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTA 406 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 406 (636)
...+..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..++++.+. .|+ ...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 45567778888999999999999998876 36678889999999999999999999999884 444 6688888889
Q ss_pred HHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 407 CWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 407 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+...|++++|.++++++.+. .+.+...+..++..|.+.|++++|.+.++++. +..|.++.++..++.+|...|+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIAL----GLRPNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHH----hcCccchHHHHHHHHHHHHcCC
Confidence 99999999999999998852 24567888999999999999999999998665 4578899999999999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 006672 487 WKDVARVRTLMQRRS 501 (636)
Q Consensus 487 ~~~A~~~~~~m~~~g 501 (636)
+++|.+.++++.+..
T Consensus 160 ~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 160 HEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999987743
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.28 E-value=2.5e-10 Score=103.00 Aligned_cols=165 Identities=8% Similarity=-0.006 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHH
Q 006672 298 TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAI 374 (636)
Q Consensus 298 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 374 (636)
.|..+...+...|++++|...|+.+++.. |.+..++..+...|.+.|++++|...+..... .+...+..+...+..
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM 85 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 33344444444444444444444444332 33444444455555555555555555544432 234455555555666
Q ss_pred cCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
.++++.|...+.+..+ ..|+ ...+..+..++...|++++|++.|++..+. -+.++..|..++.+|.+.|++++|.
T Consensus 86 ~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp TTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666665 3343 445556666666666777777666666541 1223556666777777777777777
Q ss_pred HHHHHHHHHHhccCCCCc
Q 006672 454 QNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~ 471 (636)
+.|+++. +++|+++
T Consensus 162 ~~~~~al----~~~p~~a 175 (184)
T 3vtx_A 162 KYFKKAL----EKEEKKA 175 (184)
T ss_dssp HHHHHHH----HTTHHHH
T ss_pred HHHHHHH----hCCccCH
Confidence 7666443 4566543
No 73
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.28 E-value=4.4e-10 Score=114.39 Aligned_cols=229 Identities=7% Similarity=-0.045 Sum_probs=155.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC--C---C-CchhHH
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAG-VRAN----DFTVVSALSACAKVGALEAGVRVHNYISCND--F---G-LKGAIG 334 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~---~-~~~~~~ 334 (636)
.....+...|++++|+..|++..+.- -.++ ..++..+...+...|+++.|...+....+.. . . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34445566777777777777766421 0122 2355566666777777777777776665421 0 1 124456
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHc---CCCCC-HHHHH
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS---GTEPD-GTVFL 401 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~-~~t~~ 401 (636)
+.+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|+..|++..+. ...|+ ..++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 6777778888888888877776553 12 246778888888999999999999888761 01222 55778
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
.+...+...|++++|..++++..+...-.++ ...+..+...|...|+ +++|...+++. ...|.....+.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-----~~~~~~~~~~~ 340 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-----NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-----TCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-----CChhHHHHHHH
Confidence 8888899999999999999988753322122 3456667777778888 77777777631 22233456778
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHh
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.++..|...|++++|...+++..+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999999999988765
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=4.6e-10 Score=114.52 Aligned_cols=228 Identities=8% Similarity=0.004 Sum_probs=125.3
Q ss_pred HHHHHHhcCChHHHHHHHhhCCCC----CCCC-ChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcC
Q 006672 170 LADMYVQLGKTRGAFKVFDETPEK----NKSE-SVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG 244 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g 244 (636)
....+...|++++|...|++.... +-++ ...+|..+...|...|++++|+..+++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a------------------- 169 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA------------------- 169 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH-------------------
Confidence 455667778888888888776532 1011 2356677777777777777777765443
Q ss_pred CHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCcHHHH
Q 006672 245 DLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRA-NDFTVVSALSACAKVGALEAGV 316 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~ 316 (636)
.+++...... ...+++.+...|...|++++|+..|++..+. +-.+ ...++..+...+...|++++|.
T Consensus 170 -----l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~ 244 (383)
T 3ulq_A 170 -----YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAI 244 (383)
T ss_dssp -----HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3333332210 1234555555566666666666655555431 1000 1124555555556666666666
Q ss_pred HHHHHHHHc----CC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-----CCh---hcHHHHHHHHHHcCC---hHH
Q 006672 317 RVHNYISCN----DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKE-----KDL---LTWTAMIWGLAIHGR---YEQ 380 (636)
Q Consensus 317 ~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~---~~~~~li~~~~~~g~---~~~ 380 (636)
..+....+. +. +....++..+...|.+.|++++|...+++..+ .+. ..+..+...|...|+ .++
T Consensus 245 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 324 (383)
T 3ulq_A 245 PYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324 (383)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHH
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 666555541 22 33345556666666666666666666655442 121 123445555666666 556
Q ss_pred HHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 381 AIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
|+.++++. +..|+ ...+..+...|...|++++|..++++..
T Consensus 325 al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 325 FFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666554 23333 2355566667777777777777777665
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.23 E-value=3.3e-08 Score=106.78 Aligned_cols=431 Identities=10% Similarity=0.023 Sum_probs=252.1
Q ss_pred CCHHHHHHHHHh---cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCC---hHHHHHHhccCC--C---CCcchH
Q 006672 29 ITETHIISLIHS---SNSTKQLRQIHAQIILHNLFASSRITTQLISSASLHKS---IDYALSIFDHFT--P---KNLHIF 97 (636)
Q Consensus 29 ~~~~~~~~~l~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~~~--~---~~~~~~ 97 (636)
-+......++.. .+.++.++.++++++.. ++.....|...+..-.+.|+ .+.+..+|++.. - |++..|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 444444444443 45689999999999987 45677889999999888998 999999999654 2 788899
Q ss_pred HHHHHHHHhCCCc--------hHHHHHHHHhHH-CCC-CCCc-ccHHHHHHHHHc---------cCChHHHHHHHHHHHH
Q 006672 98 NVLIRGLAENSHF--------QSCISHFVFMLR-LSV-RPNR-LTYPFVSKSVAS---------LSLLSLGRGLHCLIVK 157 (636)
Q Consensus 98 ~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~ 157 (636)
...+.-..+.++. +...++|+.... .|. .|+. ..|...+..... .++.+.++.+|..++.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 9888766555443 234478877654 566 6654 456655554332 2346778899998885
Q ss_pred hCCCCChhHHHHHHHHHHhcC-------------ChHHHHHHHhhCC------CCCCCCChhhHHHHHHHHHhcC-ChHH
Q 006672 158 SGVEYDAFVRVHLADMYVQLG-------------KTRGAFKVFDETP------EKNKSESVLLWNVLINGCSKIG-YLRK 217 (636)
Q Consensus 158 ~g~~~~~~~~~~li~~~~~~g-------------~~~~A~~~~~~m~------~~~~~~~~~~~~~li~~~~~~g-~~~~ 217 (636)
.....-..+|......-...+ +++.|...+.++. ...++....+.+ ....-..+ ....
T Consensus 223 iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ 300 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQ 300 (679)
T ss_dssp SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHH
T ss_pred CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHH
Confidence 322212233332222111111 1222333332210 000000000000 00000000 0000
Q ss_pred HHHHHhhCCCCChHHHHHHHHHHHhcC-------CHHHHHHHHhhCCC---CChhhHHHHHHHHHhCCChHHHH-HHHHH
Q 006672 218 AVELFGMMPKKNVASWVSLIDGFMRKG-------DLKKAGELFEQMPE---KGVVSWTAMINGFSQNGEAEKAL-AMFFQ 286 (636)
Q Consensus 218 A~~~~~~m~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~-~l~~~ 286 (636)
....|...+..--..+ ..+.+..+|++... .....|-..+.-+.+.|+.++|. ++|++
T Consensus 301 -----------ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 301 -----------QLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp -----------HHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 0123333333322221 11223344554432 24567777777777778878886 88888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC----------CCC-----------chhHHHHHhhHHhhcC
Q 006672 287 MLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND----------FGL-----------KGAIGTALVDMYAKCG 345 (636)
Q Consensus 287 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------~~~-----------~~~~~~~li~~~~~~g 345 (636)
.... ++.+...+...+......|+++.|.++|+.+++.. .+. ...+|...+....+.|
T Consensus 370 Ai~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~ 448 (679)
T 4e6h_A 370 GQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ 448 (679)
T ss_dssp HHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence 7763 34455555666666777788888888888777531 121 2347888888888888
Q ss_pred CHHHHHHHHhhccCC-ChhcHHHHH---HHHHHc-CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 006672 346 NIEAASLVFGETKEK-DLLTWTAMI---WGLAIH-GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 346 ~~~~A~~~~~~~~~~-~~~~~~~li---~~~~~~-g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
+++.|+.+|.+..+. +..+|...+ ..-.+. ++.+.|..+|+..++. .|+ ...+...+.-....|+.+.|+.+
T Consensus 449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~l 526 (679)
T 4e6h_A 449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSL 526 (679)
T ss_dssp CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHH
Confidence 899999999887643 222232222 222233 4588999999998884 444 45566777777778999999999
Q ss_pred HHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 420 FDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 420 ~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
|++... ....+ ....|...++.-.+.|..+.+.++.+++. +..|+++ ....++.=|.
T Consensus 527 feral~-~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~----~~~P~~~-~~~~f~~ry~ 585 (679)
T 4e6h_A 527 FESSID-KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFF----EKFPEVN-KLEEFTNKYK 585 (679)
T ss_dssp HHHHTT-TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHH----HHSTTCC-HHHHHHHHTC
T ss_pred HHHHHH-hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCc-HHHHHHHHhc
Confidence 998874 21111 35678888888888999999988888665 4467554 3344444443
No 76
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=1.6e-10 Score=113.81 Aligned_cols=231 Identities=10% Similarity=0.026 Sum_probs=166.6
Q ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------C
Q 006672 229 NVASWVSLIDGFMRKGDLKKAGELFEQMPE--------KG---VVSWTAMINGFSQNGEAEKALAMFFQMLDA------G 291 (636)
Q Consensus 229 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g 291 (636)
+..++..+...|...|++++|...|+++.+ .+ ..++..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 346788999999999999999999998764 22 467889999999999999999999998864 2
Q ss_pred CCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc------CC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC---
Q 006672 292 VRA-NDFTVVSALSACAKVGALEAGVRVHNYISCN------DF-GLKGAIGTALVDMYAKCGNIEAASLVFGETKEK--- 360 (636)
Q Consensus 292 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 360 (636)
-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|.+.|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 223 3567788888999999999999999998764 22 334567888999999999999999999876541
Q ss_pred --------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHc-------CCCCCHHHH-------HHHHHHHHhcCcHHHHHH
Q 006672 361 --------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-------GTEPDGTVF-------LAILTACWYSGQVKLALN 418 (636)
Q Consensus 361 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~-------~~ll~a~~~~g~~~~a~~ 418 (636)
...++..+...|...|++++|+..++++.+. ...|..... ..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2347888999999999999999999999863 122222211 112222333444555555
Q ss_pred HHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 419 FFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 419 ~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
.++.... ..+.....+..++.+|.+.|++++|.+.++++.+
T Consensus 266 ~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5655542 1233467889999999999999999999997653
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=1.7e-10 Score=121.10 Aligned_cols=181 Identities=6% Similarity=-0.043 Sum_probs=156.5
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCH-HHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNI-EAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKK 387 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (636)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++..+ .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455556666555433 56788999999999999999 999999998764 4577999999999999999999999999
Q ss_pred HhHcCCCCCHHHHHHHHHHHHhc---------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc--------CCch
Q 006672 388 MMYSGTEPDGTVFLAILTACWYS---------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--------GQDS 450 (636)
Q Consensus 388 m~~~g~~p~~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 450 (636)
..+ ..|+...+..+..++... |++++|.+.|++..+. -+.+...|..++.+|... |+++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 998 668878888899999999 9999999999999862 233578899999999999 9999
Q ss_pred HHHHHHHHHHHHHhccCC---CCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 451 QGYQNSQNSFTKLLQLKP---KHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+|.+.|+++. +++| .++..|..++.+|...|++++|.+.+++..+..
T Consensus 239 ~A~~~~~~al----~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAE----KVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHH----HHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH----HhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999998665 5688 899999999999999999999999999998743
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=4.1e-09 Score=106.93 Aligned_cols=238 Identities=11% Similarity=0.054 Sum_probs=151.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCcHHHHHHHHHHHHc----CCC--C-c
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGV-RAND----FTVVSALSACAKVGALEAGVRVHNYISCN----DFG--L-K 330 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 330 (636)
+++.+...|...|++++|...+++...... .++. .++..+...+...|++++|...++...+. +.+ | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 455555666667777777777666554100 1111 22444555666677777777777666542 211 1 2
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhhccC--C------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHH
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGETKE--K------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFL 401 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~ 401 (636)
...+..+...|...|++++|...+++... + ...+|..+...+...|++++|...+++.......++ ...+.
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 34555677777778888888777776542 1 124567777888888999999999988875322221 11121
Q ss_pred -----HHHHHHHhcCcHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC-CCC-ch
Q 006672 402 -----AILTACWYSGQVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK-PKH-PS 472 (636)
Q Consensus 402 -----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~-p~~-~~ 472 (636)
..+..+...|++++|...++.......-.+ ....+..+..++...|++++|.+.++++.+..-... |.+ ..
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 294 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 294 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHH
Confidence 223346788999999999988764211111 123567788889999999999999997765543322 112 23
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 473 SYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 473 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+..++.+|...|++++|...+++....
T Consensus 295 ~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 295 NLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6778899999999999999999887663
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.19 E-value=9.4e-10 Score=103.11 Aligned_cols=207 Identities=6% Similarity=-0.017 Sum_probs=160.0
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHh
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (636)
.|...|......+...|++++|+..|++..+...+++...+..+..++...|++++|...++..++.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 45678888999999999999999999999987644788888888889999999999999999999765 55788899999
Q ss_pred hHHhhcCCHHHHHHHHhhccC--C-Ch-------hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--H-HHHHHHHH
Q 006672 339 DMYAKCGNIEAASLVFGETKE--K-DL-------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--G-TVFLAILT 405 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~--~-~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~-~t~~~ll~ 405 (636)
..|...|++++|...|++..+ | +. ..|..+...+...|++++|++.|++..+ ..|+ . ..+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 999999999999999998775 3 44 4588888889999999999999999988 6776 3 46666666
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
++... +..+++.+.. .+ ..+...|.... ....+.+++|...++++. +++|+++.+...+..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~-~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~----~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNN-----GADVLRKATP-LA-SSNKEKYASEK--AKADAAFKKAVDYLGEAV----TLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHH-----HHHHHHHHGG-GT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHH----HHCTTCHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHh-cc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHh----hcCCCCHHHHHHHHHHH
Confidence 66544 4445555553 21 23344444333 344566888988887554 67999988877776553
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=2.9e-10 Score=110.00 Aligned_cols=228 Identities=11% Similarity=0.048 Sum_probs=155.7
Q ss_pred HhCCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc------C-CCCchhHHHHH
Q 006672 272 SQNGEAEKALAMFFQMLD-------AGVRANDFTVVSALSACAKVGALEAGVRVHNYISCN------D-FGLKGAIGTAL 337 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~-------~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 337 (636)
...|++++|+.+|++..+ ...+....++..+...+...|++++|...+..+++. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777776654 122234567778888889999999999999888764 2 23346678888
Q ss_pred hhHHhhcCCHHHHHHHHhhccC-------C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHc------CCCCC-HHH
Q 006672 338 VDMYAKCGNIEAASLVFGETKE-------K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS------GTEPD-GTV 399 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t 399 (636)
...|...|++++|...|++..+ + ...+|..+...|...|++++|+..|+++.+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999998887653 1 2457888888899999999999999998773 11343 347
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhc------CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc---cCCC
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDY------FIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ---LKPK 469 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---l~p~ 469 (636)
+..+...+...|++++|..+++++.+.. ...+. ...|..+...+...+....+..+ ..+....-. ..|.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 7788888899999999999999887521 11222 34455555555544444444332 222211112 2344
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+.++..++.+|...|++++|..++++..+.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999999988763
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.17 E-value=7e-10 Score=103.97 Aligned_cols=191 Identities=8% Similarity=-0.049 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHH
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 371 (636)
|+..+......+...|++++|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666666667777777777777766655325555555566666666666666666665543 233456666666
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCC-H-------HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHH
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPD-G-------TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVV 440 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~ 440 (636)
|...|++++|+..|++..+ ..|+ . ..|..+...+...|++++|.+.|++..+ +.|+ ...|..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 6666666666666666665 3343 2 2344444555556666666666666553 3343 34555555
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+|...|+ ..++ +...+.+.++..|..+ .....|.+++|...+++..+..
T Consensus 161 ~~~~~~~~-----~~~~----~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNNGA-----DVLR----KATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHH----HHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHH----HHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC
Confidence 55544332 1111 2223333333333222 2233445699999999988743
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.17 E-value=9.6e-10 Score=111.89 Aligned_cols=217 Identities=10% Similarity=0.033 Sum_probs=113.0
Q ss_pred HHHHhcCChHHHHHHHhhCCCCCC-CC----ChhhHHHHHHHHHhcCChHHHHHHHhhCCC-----CC-----hHHHHHH
Q 006672 172 DMYVQLGKTRGAFKVFDETPEKNK-SE----SVLLWNVLINGCSKIGYLRKAVELFGMMPK-----KN-----VASWVSL 236 (636)
Q Consensus 172 ~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-----~~~~~~l 236 (636)
..+...|++++|...|++...... .+ ...++..+...|...|++++|+..+++... ++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344455555555555554432100 01 233455555566666666655555554431 11 2345555
Q ss_pred HHHHHhcCCHHHHHHHHhhCCC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006672 237 IDGFMRKGDLKKAGELFEQMPE-----KG----VVSWTAMINGFSQNGEAEKALAMFFQMLD-----AGVRANDFTVVSA 302 (636)
Q Consensus 237 i~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~l 302 (636)
...|...|++++|.+.|++..+ .+ ..+++.+...|...|++++|+..|++..+ .. +....++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHH
Confidence 5566666666666655554332 11 34666777777777777777777777665 22 2224556666
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHcC----CCCchhHHHHHhhHHhhcCC---HHHHHHHHhhccCC--ChhcHHHHHHHHH
Q 006672 303 LSACAKVGALEAGVRVHNYISCND----FGLKGAIGTALVDMYAKCGN---IEAASLVFGETKEK--DLLTWTAMIWGLA 373 (636)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~--~~~~~~~li~~~~ 373 (636)
...+...|++++|...++...+.. .+.....+..+...|...|+ +.+|...+++.... ....+..+...|.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 666667777777777776665531 11222334444445555555 55555555543221 1123344555555
Q ss_pred HcCChHHHHHHHHHHh
Q 006672 374 IHGRYEQAIQYFKKMM 389 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~ 389 (636)
..|++++|...|++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555543
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.15 E-value=2.5e-08 Score=101.09 Aligned_cols=163 Identities=12% Similarity=0.022 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc-hhHHH-
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVR--A--NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK-GAIGT- 335 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~- 335 (636)
.++..+...|...|++++|...+++....... + ...++..+...+...|++++|...++...+....++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 45666777788888888888888877653211 1 234555666667777777777777776654311111 11111
Q ss_pred ----HHhhHHhhcCCHHHHHHHHhhccCCCh-------hcHHHHHHHHHHcCChHHHHHHHHHHhHc----CCCCCH-HH
Q 006672 336 ----ALVDMYAKCGNIEAASLVFGETKEKDL-------LTWTAMIWGLAIHGRYEQAIQYFKKMMYS----GTEPDG-TV 399 (636)
Q Consensus 336 ----~li~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t 399 (636)
.++..+...|+.++|...+++....+. ..+..+...+...|++++|...+++.... |..++. ..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 223335566666666666666554211 12344555555566666666666555431 111111 13
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
+..+..++...|+.++|...+++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3333344445555555555554443
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.12 E-value=3.5e-09 Score=94.99 Aligned_cols=156 Identities=15% Similarity=0.097 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAK 308 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 308 (636)
.+..+...+...|++++|...|+++... +..+|..+...|...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 3445555566666666666666665532 34566666677777777777777777766542 3344555555555666
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|...++++.+ .+..+|..+...+...|++++|...+
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666555443 33344444444444444444444444443332 12333444444444444444444444
Q ss_pred HHHh
Q 006672 386 KKMM 389 (636)
Q Consensus 386 ~~m~ 389 (636)
+++.
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.12 E-value=1.5e-09 Score=118.59 Aligned_cols=159 Identities=13% Similarity=0.080 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHH
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLA 373 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 373 (636)
.+++.+..++.+.|++++|.+.|+++++.. +.+...+..|..+|.+.|++++|.+.|++..+ .+..+|+.+..+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555555555555555555555555443 34455666666666666666666666666543 34567777888888
Q ss_pred HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchH
Q 006672 374 IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 451 (636)
..|++++|++.|++.++ +.|+ ...+..+..++...|++++|++.|++..+ +.|+ ...|..++.+|...|++++
T Consensus 89 ~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888887 5666 55788888888888888888888888875 3454 6778888888888888888
Q ss_pred HHHHHHHHHH
Q 006672 452 GYQNSQNSFT 461 (636)
Q Consensus 452 A~~~~~~~~~ 461 (636)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888886654
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.11 E-value=5.2e-10 Score=97.17 Aligned_cols=141 Identities=12% Similarity=0.089 Sum_probs=117.6
Q ss_pred HhhHHhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCc
Q 006672 337 LVDMYAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ 412 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~ 412 (636)
|..++...|++++|...++...+. +...+..+...|.+.|++++|++.|++.++ +.|+ ..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCc
Confidence 566777888999999999888763 455778899999999999999999999999 6676 6688899999999999
Q ss_pred HHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHH-HHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 413 VKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQN-SQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+++|...|++..+ +.| ++..|..++.+|.+.|++++|.+. ++ ++++++|+++.+|.....++...|+
T Consensus 81 ~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~----~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVE----RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH----HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHH----HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999986 455 478899999999999999887765 45 4457899999999999999888875
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.09 E-value=4.5e-09 Score=102.66 Aligned_cols=162 Identities=10% Similarity=-0.053 Sum_probs=105.2
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHc-CChHHHHHHHHHHhHcCCCCC-----
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIH-GRYEQAIQYFKKMMYSGTEPD----- 396 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~----- 396 (636)
.+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...|... |++++|+..|++..+ +.|+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~ 155 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQSVA 155 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCCChH
Confidence 3455555555555555555555554432 11 34677788888886 999999999988876 2221
Q ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh-----hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 397 --GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV-----KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 397 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
..++..+...+...|++++|...|++..+...-.+.. ..|..++.++...|++++|...+++ .++++|.
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~----al~l~p~ 231 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE----GQSEDPN 231 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG----GGCC---
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHhhCCC
Confidence 2467788888999999999999999887522111221 2577788889999999999998884 4577776
Q ss_pred Cchh-----HHHHHHHHH--HcCChhHHHHHHHHHHh
Q 006672 470 HPSS-----YVLLSNIYA--AEGRWKDVARVRTLMQR 499 (636)
Q Consensus 470 ~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~~ 499 (636)
...+ +..++..|. ..+++++|...++++..
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 5443 344566664 35678888888765543
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.02 E-value=2e-08 Score=96.24 Aligned_cols=190 Identities=11% Similarity=0.046 Sum_probs=119.1
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhccC--C-C---hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC-CCC-HHHHH
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGETKE--K-D---LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT-EPD-GTVFL 401 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~ 401 (636)
+...+..+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344445555555566666666666665543 2 2 34555566666666666666666666665211 111 22444
Q ss_pred HHHHHHHh--------cCcHHHHHHHHHHhHhhcCCCCChh---------------HHHHHHHHHHhcCCchHHHHHHHH
Q 006672 402 AILTACWY--------SGQVKLALNFFDSMRFDYFIEPSVK---------------HHTVVVNLLSRVGQDSQGYQNSQN 458 (636)
Q Consensus 402 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~---------------~~~~l~~~~~~~g~~~~A~~~~~~ 458 (636)
.+..++.. .|++++|...|+++.+.+.-.+... .+..++..|.+.|++++|...+++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45555555 6666666666666654221111111 125678899999999999999996
Q ss_pred HHHHHhccCCC---CchhHHHHHHHHHHc----------CChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCCc
Q 006672 459 SFTKLLQLKPK---HPSSYVLLSNIYAAE----------GRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGGH 525 (636)
Q Consensus 459 ~~~~~~~l~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~~ 525 (636)
+. +..|+ .+..+..++.+|... |++++|...++++.+.. |+ +
T Consensus 174 ~l----~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~-------------------~ 228 (261)
T 3qky_A 174 VF----DAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PD-------------------S 228 (261)
T ss_dssp HH----HHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TT-------------------C
T ss_pred HH----HHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CC-------------------C
Confidence 65 45676 345888999999977 89999999999998743 21 4
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q 006672 526 KLAKEIHSKLEDIMAGARE 544 (636)
Q Consensus 526 ~~~~~i~~~l~~l~~~~~~ 544 (636)
|.+.+....+.++...+.+
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666544
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.98 E-value=3.8e-09 Score=102.03 Aligned_cols=213 Identities=10% Similarity=0.024 Sum_probs=150.9
Q ss_pred HHHHHHHHhhCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCcHH
Q 006672 246 LKKAGELFEQMPEKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA------GVRA-NDFTVVSALSACAKVGALEA 314 (636)
Q Consensus 246 ~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~ 314 (636)
+++|++++++....+ ..+|..+...|...|++++|+..|++..+. +-.| ...++..+...+...|++++
T Consensus 24 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 103 (283)
T 3edt_B 24 CKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKE 103 (283)
T ss_dssp HHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHH
Confidence 556666666554333 568999999999999999999999998864 2223 35678888899999999999
Q ss_pred HHHHHHHHHHc------C-CCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----------ChhcHHHHHHHHHHcC
Q 006672 315 GVRVHNYISCN------D-FGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----------DLLTWTAMIWGLAIHG 376 (636)
Q Consensus 315 a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g 376 (636)
|...+..+.+. . .+....++..+...|...|++++|...|++..+. ...++..+...|...|
T Consensus 104 A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g 183 (283)
T 3edt_B 104 AEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183 (283)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence 99999998764 1 2345678889999999999999999999876542 2457888999999999
Q ss_pred ChHHHHHHHHHHhHc-------CCCCCHH-HHHHHHHHHHhcC------cHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYS-------GTEPDGT-VFLAILTACWYSG------QVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~-------g~~p~~~-t~~~ll~a~~~~g------~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
++++|+..++++.+. ...|... .+..+.......+ .+..+...++.... ..+.....+..++.+
T Consensus 184 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 184 KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGAL 261 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 999999999998863 1233322 3333333333222 23333333332221 112235678899999
Q ss_pred HHhcCCchHHHHHHHHHH
Q 006672 443 LSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 443 ~~~~g~~~~A~~~~~~~~ 460 (636)
|.+.|++++|.+.++++.
T Consensus 262 ~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 999999999999998665
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.98 E-value=1.2e-08 Score=85.91 Aligned_cols=131 Identities=15% Similarity=0.267 Sum_probs=108.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
.|..+...+...|++++|+.+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 56778888889999999999999988742 224567778888888999999999999998752 234577888899999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+.|++++|.+.++++. +..|.++..+..++.+|...|++++|...++++.+..
T Consensus 80 ~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKAL----ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHH----HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999998665 4578888899999999999999999999999987643
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.98 E-value=8.1e-08 Score=92.17 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=123.5
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC-CCchhHHHHHhhHHhhcCCHHHHHHHHhhcc
Q 006672 280 ALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDF-GLKGAIGTALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 280 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
|+..|++....+ .++..++..+..++...|++++|.+++...+..+. ..+...+..++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666666554 45555656667777777888888877777765542 2456677777888888888888888888776
Q ss_pred C--C-----ChhcHHHHHHH--HHHcC--ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc
Q 006672 359 E--K-----DLLTWTAMIWG--LAIHG--RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDY 427 (636)
Q Consensus 359 ~--~-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 427 (636)
+ | +..+...+..+ ....| ++.+|..+|+++.+ -.|+..+-..++.++.+.|++++|.+.++.+.+.+
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~--~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ--TFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT--TSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH--hCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5 3 13444555555 22234 88899999999876 44653333444457888999999999988766422
Q ss_pred ----C----CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 428 ----F----IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 428 ----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
. -+.++.+...+|.+....|+ +|.++++ ++.+..|+++.+.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~----qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTN----QLVKLDHEHAFIK 290 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHH----HHHHTTCCCHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHH----HHHHhCCCChHHH
Confidence 0 13356777677766666776 7777766 4446788876544
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.96 E-value=5.4e-08 Score=93.42 Aligned_cols=238 Identities=8% Similarity=0.011 Sum_probs=163.4
Q ss_pred hcCCHHHHHHHHhhCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Q 006672 242 RKGDLKKAGELFEQMPEKG-VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHN 320 (636)
Q Consensus 242 ~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 320 (636)
-.|.+..++.-...+...+ ...-.-+.++|...|+++.. ..-.|....+..+... ...+ +...++
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~ 90 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELE 90 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHH
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHH
Confidence 3566666666445443322 22222344667777766532 1223443343333333 3322 566777
Q ss_pred HHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC-----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC
Q 006672 321 YISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 321 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 395 (636)
..++.+ +++......+..+|...|++++|.+++.+.... +...+..++..+.+.|+.+.|.+.+++|.+ ..|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCc
Confidence 766555 455566678899999999999999999987543 456788889999999999999999999988 677
Q ss_pred -----CHHHHHHHHHH--HHhcC--cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhc-
Q 006672 396 -----DGTVFLAILTA--CWYSG--QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ- 465 (636)
Q Consensus 396 -----~~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 465 (636)
+..+...+..+ ....| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+.+.--+
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35666677666 33334 899999999999752 355333344444899999999999999854422111
Q ss_pred -----cCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 466 -----LKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 466 -----l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+|+|+.++..++.++...|+ +|.++++++++..
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 158899999888888888887 8999999999854
No 93
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.95 E-value=2e-08 Score=98.07 Aligned_cols=208 Identities=14% Similarity=0.079 Sum_probs=143.0
Q ss_pred CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCcHHHHHHH
Q 006672 245 DLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDA----GVRAN-DFTVVSALSACAKVGALEAGVRVH 319 (636)
Q Consensus 245 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~ 319 (636)
++++|...|++. +..|...|++++|+..|.+..+. |-+++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666666553 45677788888888888777542 32222 457777888888888888888888
Q ss_pred HHHHHcCC---CC--chhHHHHHhhHHhhc-CCHHHHHHHHhhccC--C---C----hhcHHHHHHHHHHcCChHHHHHH
Q 006672 320 NYISCNDF---GL--KGAIGTALVDMYAKC-GNIEAASLVFGETKE--K---D----LLTWTAMIWGLAIHGRYEQAIQY 384 (636)
Q Consensus 320 ~~~~~~~~---~~--~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~g~~~~A~~~ 384 (636)
+..++... .+ ...+++.+..+|... |++++|...|++..+ | + ..+|+.+...|...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 87765321 11 145778888889986 999999999988764 1 1 34688889999999999999999
Q ss_pred HHHHhHcCCCCCHH------HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh------hHHHHHHHHHH--hcCCch
Q 006672 385 FKKMMYSGTEPDGT------VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSV------KHHTVVVNLLS--RVGQDS 450 (636)
Q Consensus 385 ~~~m~~~g~~p~~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~------~~~~~l~~~~~--~~g~~~ 450 (636)
|++..+........ .+..+..++...|++++|...|++..+ +.|+. ..+..++..+. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998843222211 466777788899999999999998874 44442 13444556664 456788
Q ss_pred HHHHHHHHHHHHHhccCCCC
Q 006672 451 QGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p~~ 470 (636)
+|++.|++ .++++|.+
T Consensus 258 ~A~~~~~~----~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDN----FMRLDKWK 273 (292)
T ss_dssp HHHHHHTT----SSCCCHHH
T ss_pred HHHHHhcc----CCccHHHH
Confidence 88887763 33555543
No 94
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.94 E-value=3.5e-09 Score=116.24 Aligned_cols=169 Identities=9% Similarity=0.034 Sum_probs=118.0
Q ss_pred HhcCCcHHHHHHHHHHH--------HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHc
Q 006672 307 AKVGALEAGVRVHNYIS--------CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIH 375 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 375 (636)
...|++++|.+.++.+. +.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777776 322 45566777777777777888888777777664 3566777777777778
Q ss_pred CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHH
Q 006672 376 GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 376 g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
|++++|++.|++..+ ..|+ ...+..+..++...|++++ .+.|++..+ +.| +...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888777 5555 4566777777777888877 777777764 233 4667777777888888888888
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+.++ ++++++|.+..+|..++.+|...|+
T Consensus 555 ~~~~----~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLD----EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHH----TSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHH----hhcccCcccHHHHHHHHHHHHccCC
Confidence 7776 3446777777777777777766555
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.92 E-value=2e-08 Score=89.75 Aligned_cols=158 Identities=13% Similarity=0.006 Sum_probs=115.8
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHH-HH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTA-CW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~ 408 (636)
....+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++... ..|+.......... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHH
Confidence 345566778888999999999988775 4667888888889999999999999988877 44443322221111 11
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHcC
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIYAAEG 485 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~~~~g 485 (636)
..+...+|...+++..+ ..| ++..+..+..+|.+.|++++|.+.++++ ++.+|.. +..+..++.+|...|
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~----l~~~p~~~~~~a~~~l~~~~~~~g 158 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNI----LKVNLGAQDGEVKKTFMDILSALG 158 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCTTTTTTHHHHHHHHHHHHHC
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH----HHhCcccChHHHHHHHHHHHHHhC
Confidence 22223346778888775 345 4788888999999999999999998854 4667754 568899999999999
Q ss_pred ChhHHHHHHHHHHh
Q 006672 486 RWKDVARVRTLMQR 499 (636)
Q Consensus 486 ~~~~A~~~~~~m~~ 499 (636)
+.++|...+++...
T Consensus 159 ~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 159 QGNAIASKYRRQLY 172 (176)
T ss_dssp SSCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999998887653
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.91 E-value=1.5e-08 Score=111.26 Aligned_cols=195 Identities=11% Similarity=0.054 Sum_probs=155.5
Q ss_pred HhCCChHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 272 SQNGEAEKALAMFFQML--------DAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
...|++++|++.|++.. +.. +.+...+..+..++...|++++|...++.+++.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 78899999999999988 332 3455778888889999999999999999999875 6678899999999999
Q ss_pred cCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHH
Q 006672 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNF 419 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 419 (636)
.|++++|.+.|++..+ .+...|..+..+|.+.|++++ ++.|++..+ ..|+ ...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998774 467789999999999999999 999999998 5666 56888999999999999999999
Q ss_pred HHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHH-HHHHHHHHHHHhccCCCCchhH
Q 006672 420 FDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQG-YQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 420 ~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
|+++.+ +.|+ ...|..++.+|...|+.+++ .+-++++.+.+..+.+.++...
T Consensus 557 ~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~ 610 (681)
T 2pzi_A 557 LDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL 610 (681)
T ss_dssp HHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred HHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence 998874 5565 67788888888777775555 5666666666666655554433
No 97
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=2e-08 Score=96.11 Aligned_cols=207 Identities=10% Similarity=-0.050 Sum_probs=120.2
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCC--CCchhH
Q 006672 259 KGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRAN---DFTVVSALSACAKVGALEAGVRVHNYISCNDF--GLKGAI 333 (636)
Q Consensus 259 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 333 (636)
.+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...++.+++... +.....
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566667777777788888888887777642 112 45566666667777777777777777766431 122334
Q ss_pred HHHHhhHHhh--------cCCHHHHHHHHhhccC--CC-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHH
Q 006672 334 GTALVDMYAK--------CGNIEAASLVFGETKE--KD-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLA 402 (636)
Q Consensus 334 ~~~li~~~~~--------~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 402 (636)
+..+..+|.+ .|++++|...|+++.+ |+ ...+.++. .+...... -...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~--------------~~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQ--------------KIRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHH--------------HHHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHH--------------HHHHHHHH----HHHHHHH
Confidence 4555555555 5555555555555443 21 11111110 00000000 0011245
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhc----------CCchHHHHHHHHHHHHHhccCCCCc
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRV----------GQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
+...+...|++++|...|+.+.+...-.+ ....+..++.+|... |++++|...++++. +..|+++
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~----~~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLL----QIFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHH----HHCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHH----HHCCCCh
Confidence 66778888999999999988876332222 245777788888766 88899999888655 5578775
Q ss_pred h---hHHHHHHHHHHcCChh
Q 006672 472 S---SYVLLSNIYAAEGRWK 488 (636)
Q Consensus 472 ~---~~~~l~~~~~~~g~~~ 488 (636)
. ++..+..++.+.|+++
T Consensus 230 ~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 230 LLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3 3444555555444443
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=5.6e-08 Score=90.71 Aligned_cols=182 Identities=11% Similarity=0.027 Sum_probs=109.4
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCC-C-chhHHHHHhhHHhhcCCHHHHHHHHhhccC--CCh----hcHHHH
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFG-L-KGAIGTALVDMYAKCGNIEAASLVFGETKE--KDL----LTWTAM 368 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l 368 (636)
..+......+...|++++|...|+.+++.... + ....+..+..+|.+.|++++|...|++..+ |+. .++..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34445555666777777777777777764311 1 134566667777777777777777776654 221 133334
Q ss_pred HHHHHH------------------cCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC
Q 006672 369 IWGLAI------------------HGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTACWYSGQVKLALNFFDSMRFDYFI 429 (636)
Q Consensus 369 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 429 (636)
..++.. .|+.++|+..|+++++ ..|+.. ....... .+ .+...+
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----l~------~~~~~~------ 146 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----LV------FLKDRL------ 146 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----HH------HHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----HH------HHHHHH------
Confidence 444433 2344555555555544 233321 1110000 00 000000
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc---hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP---SSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
......++..|.+.|++++|...++++. +..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l----~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGML----RDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHH----HHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 0112356778999999999999999665 5578765 57899999999999999999999999886543
No 99
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=2.4e-08 Score=97.10 Aligned_cols=163 Identities=10% Similarity=-0.007 Sum_probs=93.8
Q ss_pred CCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHH-HH
Q 006672 328 GLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFL-AI 403 (636)
Q Consensus 328 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~l 403 (636)
+.+......+...+...|++++|...|++... .+...+..+...+.+.|++++|+..++++.. ..|+..... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHH
Confidence 33444445555555566666666666655542 2445566666666666666666666666655 344433221 12
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHH
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIY 481 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~ 481 (636)
...+...+..++|...+++..+. -+.+...+..+..+|...|++++|.+.++++. +.+|.+ ...+..|+.+|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l----~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHL----RXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHH----hcccccccchHHHHHHHHH
Confidence 22344555556666666666541 12345666667777777777777777666444 446655 66677777777
Q ss_pred HHcCChhHHHHHHHHHH
Q 006672 482 AAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 482 ~~~g~~~~A~~~~~~m~ 498 (636)
...|+.++|...+++..
T Consensus 266 ~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 266 AALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHH
Confidence 77777777766666543
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.90 E-value=8.7e-08 Score=93.13 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=133.9
Q ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHH-HHH
Q 006672 293 RANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWT-AMI 369 (636)
Q Consensus 293 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~-~li 369 (636)
+.+...+..+...+...|++++|...++.+++.. |.+...+..+...|.+.|++++|...++++.. |+..... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3445566677777888899999999999888765 56778889999999999999999999999876 4443322 233
Q ss_pred HHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCC
Q 006672 370 WGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQ 448 (636)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~ 448 (636)
..+...++.++|+..+++... ..|+ ...+..+..++...|++++|...|.++.+...-..+...+..++.+|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 346677888999999999998 5666 5688888999999999999999999998632222236789999999999999
Q ss_pred chHHHHHHHHHHHHH
Q 006672 449 DSQGYQNSQNSFTKL 463 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~ 463 (636)
.++|...++++...+
T Consensus 271 ~~~a~~~~r~al~~~ 285 (287)
T 3qou_A 271 GDALASXYRRQLYAL 285 (287)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHh
Confidence 999999999776553
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.86 E-value=5.5e-08 Score=81.76 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=67.8
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
.|..++..|...|++++|+.+|+++.+.+ +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566666777777777777777766543 2345555556666666666666666666665543 333444444445555
Q ss_pred hcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 343 KCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..|++++|.+.|+++.+ .+...|..+...+...|++++|...++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555444444332 2233444444444444444444444444443
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.85 E-value=4.7e-09 Score=91.05 Aligned_cols=124 Identities=9% Similarity=0.024 Sum_probs=102.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHh
Q 006672 368 MIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSR 445 (636)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~ 445 (636)
|...+...|++++|+..+++... ..|+ ...+..+...|...|++++|.+.|++..+ +.| ++..|..++.+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~ 77 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYEL 77 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHH
Confidence 34455667889999999999876 5555 44677788899999999999999999986 345 58899999999999
Q ss_pred cCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH-HHHHHhC
Q 006672 446 VGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV-RTLMQRR 500 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 500 (636)
.|++++|...|+++. +++|.++.+|..++.+|.+.|++++|.+. +++..+.
T Consensus 78 ~~~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 78 EENTDKAVECYRRSV----ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp TTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999998554 67999999999999999999999887765 5777763
No 103
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.83 E-value=9.2e-08 Score=85.33 Aligned_cols=157 Identities=13% Similarity=0.097 Sum_probs=113.6
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHH-HHHcCC
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWG-LAIHGR 377 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~g~ 377 (636)
.....+...|++++|...++.+++.. |.+...+..+...|.+.|++++|...|++... |+...+..+... +...+.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~ 89 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAA 89 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcc
Confidence 34445566677777777776665543 45667777888888888888888888888765 333322222211 223233
Q ss_pred hHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHhcCCchHHH
Q 006672 378 YEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~ 453 (636)
..+|+..+++..+ ..|+ ...+..+..++...|++++|...|+++.+ ..|+ ...+..++.+|...|+.++|.
T Consensus 90 ~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 90 ESPELKRLEQELA--ANPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp SCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 4467899999988 6676 66888888999999999999999999985 3443 568899999999999999999
Q ss_pred HHHHHHHHHH
Q 006672 454 QNSQNSFTKL 463 (636)
Q Consensus 454 ~~~~~~~~~~ 463 (636)
..|+++...+
T Consensus 165 ~~y~~al~~~ 174 (176)
T 2r5s_A 165 SKYRRQLYSI 174 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999776543
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.82 E-value=5.5e-07 Score=94.27 Aligned_cols=374 Identities=10% Similarity=-0.040 Sum_probs=223.5
Q ss_pred CC-ChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCC-hHHHHHHHH
Q 006672 76 HK-SIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSL-LSLGRGLHC 153 (636)
Q Consensus 76 ~g-~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~ 153 (636)
.| +++.|+.+|+... ..+-. |+++.+..+|++.... .|+...|..-+....+.++ .+....+|+
T Consensus 7 ~~~~i~~aR~vyer~l-----------~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 7 MGVELSSPSAIMEHAR-----------RLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -----CCHHHHHHHHH-----------HHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred cCcchHHHHHHHHHHH-----------HHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 45 3667777776542 22211 8899999999998873 4788888888877766653 456778888
Q ss_pred HHHHh-CCCC-ChhHHHHHHHHHH----hcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC
Q 006672 154 LIVKS-GVEY-DAFVRVHLADMYV----QLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK 227 (636)
Q Consensus 154 ~~~~~-g~~~-~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 227 (636)
.++.. |..+ +..+|...+..+. ..|+++.+.++|++........-...|......- +......+..++.+
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~--- 148 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGD--- 148 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHH---
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHH---
Confidence 88775 4333 5677777776654 3467888999999887532111122333322211 11112222222221
Q ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhhHHHHHHHHHhCC--C-----hHHHHHHHHHHHHCCCCCCH
Q 006672 228 KNVASWVSLIDGFMRKGDLKKAGELFEQMP----EKGVVSWTAMINGFSQNG--E-----AEKALAMFFQMLDAGVRAND 296 (636)
Q Consensus 228 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~A~~l~~~m~~~g~~p~~ 296 (636)
.. +.+..|..+++.+. ..+...|...+.--..++ - .+.+..+|+++... .+.+.
T Consensus 149 ------------~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~ 213 (493)
T 2uy1_A 149 ------------TL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAE 213 (493)
T ss_dssp ------------HH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCH
T ss_pred ------------Hh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCH
Confidence 00 11222222222211 123345655554433221 1 34567788888775 34556
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhcc------------CCChhc
Q 006672 297 FTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETK------------EKDLLT 364 (636)
Q Consensus 297 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~------------~~~~~~ 364 (636)
..|...+.-+...|+.+.|..+++..++. |.+...+...... .+.++. ...+.+... ......
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l 288 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLL 288 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC----------CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhhhhcccccHHH
Confidence 77777777777888999999999988877 4554444332221 111111 111211110 012246
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACW-YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLL 443 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~ 443 (636)
|...+....+.++.+.|..+|+++ +. ..++...|......-. ..++.+.|..+|+...+.++ .++..+...++..
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e 364 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHH
Confidence 777777777788899999999999 32 1223444433222112 23469999999999987442 3456677788989
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+.|+.+.|..+|+++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 365 ~~~~~~~~aR~l~er~--------~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRL--------EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHS--------CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999865 34667888888888888999999998888764
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.81 E-value=6.4e-08 Score=104.17 Aligned_cols=161 Identities=10% Similarity=-0.047 Sum_probs=121.8
Q ss_pred cCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHH
Q 006672 309 VGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYF 385 (636)
Q Consensus 309 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (636)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988764 56688899999999999999999999998775 45678999999999999999999999
Q ss_pred HHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---CCchHHHHHHHHHHH
Q 006672 386 KKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV---GQDSQGYQNSQNSFT 461 (636)
Q Consensus 386 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 461 (636)
++..+ ..|+ ...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |++++|.+.++++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al- 155 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV- 155 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH-
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH-
Confidence 99998 4565 568888889999999999999999998852 133577889999999999 99999999988654
Q ss_pred HHhccCCCCchhHHHHH
Q 006672 462 KLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~ 478 (636)
+.+|.+...|..++
T Consensus 156 ---~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 ---AQGVGAVEPFAFLS 169 (568)
T ss_dssp ---HHTCCCSCHHHHTT
T ss_pred ---hcCCcccChHHHhC
Confidence 56888888887776
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=2.2e-07 Score=85.65 Aligned_cols=173 Identities=10% Similarity=0.011 Sum_probs=118.3
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC-CChhcHHHHHHHHHHcC----ChHHHHHHHHHHh
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHG----RYEQAIQYFKKMM 389 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 389 (636)
|.+.|....+.| ++..+..|..+|...+++++|.+.|++..+ .+..++..|...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444332 444555555556666666666666665544 345556666666665 5 7788888888876
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHh----cCCchHHHHHHHH
Q 006672 390 YSGTEPDGTVFLAILTACWY----SGQVKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR----VGQDSQGYQNSQN 458 (636)
Q Consensus 390 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 458 (636)
+.| +...+..+...|.. .+++++|.++|++..+ ..|. +..+..|..+|.. .+++++|...|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 643 45566666666666 7788888888888763 2342 6777888888888 7889999999987
Q ss_pred HHHHHhccCCCCchhHHHHHHHHHHc-C-----ChhHHHHHHHHHHhCCC
Q 006672 459 SFTKLLQLKPKHPSSYVLLSNIYAAE-G-----RWKDVARVRTLMQRRSI 502 (636)
Q Consensus 459 ~~~~~~~l~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~ 502 (636)
+.+ + |.++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 155 A~~----~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSS----L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHH----T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHH----c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 653 3 55777888999998874 3 88999999999888763
No 107
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=1.2e-06 Score=85.25 Aligned_cols=164 Identities=13% Similarity=-0.025 Sum_probs=124.5
Q ss_pred HHhhHHhhcCCHHHHHHHHhhccCC-----C----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC----HHHHH
Q 006672 336 ALVDMYAKCGNIEAASLVFGETKEK-----D----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFL 401 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~ 401 (636)
..+..+...|++++|...+++..+. + ...+..+...+...|++++|+..|++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 3467788899999999999887652 1 113334666677778999999999999884222 22 22688
Q ss_pred HHHHHHHhcCcHHHHHHHHHHhHhhc----CCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhH
Q 006672 402 AILTACWYSGQVKLALNFFDSMRFDY----FIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSY 474 (636)
Q Consensus 402 ~ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~ 474 (636)
.+..+|...|++++|..+|+++.+.. +..+. ...|..++..|.+.|++++|.+.++++.+...+.+ +.-+.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 88899999999999999999987421 11222 45788999999999999999999998876544432 2225789
Q ss_pred HHHHHHHHHcCC-hhHHHHHHHHHHh
Q 006672 475 VLLSNIYAAEGR-WKDVARVRTLMQR 499 (636)
Q Consensus 475 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 499 (636)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999988764
No 108
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.78 E-value=1.7e-07 Score=86.16 Aligned_cols=185 Identities=13% Similarity=0.089 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDF-TVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK 343 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 343 (636)
-.....+.+.|++++|+..|++..+. .|+.. .+.. ..... ...........+...|.+
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~--------------~~~~~~~~~~~lg~~~~~ 66 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDK--------------NSEISSKLATELALAYKK 66 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCT--------------TSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcc--------------hhhhhHHHHHHHHHHHHH
Confidence 34455667778888888888777764 33322 1211 00000 001112233446777777
Q ss_pred cCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCc--HHHHH
Q 006672 344 CGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ--VKLAL 417 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~--~~~a~ 417 (636)
.|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+ ..++..+..++...|. .+.+.
T Consensus 67 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 144 (208)
T 3urz_A 67 NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLE 144 (208)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 7888888877777654 3566777788888888888888888888877 5565 4566666666655543 33445
Q ss_pred HHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 418 NFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 418 ~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
..++.... ..|....+..+..++...|++++|...|++ .+++.|+ ......|..+
T Consensus 145 ~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~----al~l~P~-~~~~~~l~~i 199 (208)
T 3urz_A 145 TDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQK----VILRFPS-TEAQKTLDKI 199 (208)
T ss_dssp HHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHH----HTTTSCC-HHHHHHHHHH
T ss_pred HHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHH----HHHhCCC-HHHHHHHHHH
Confidence 55544431 222222334455666677888888888774 4467774 4445555554
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.77 E-value=4.9e-08 Score=84.30 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=85.7
Q ss_pred CCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 393 TEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 393 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+.|+. ..+..+...+...|++++|...|++... +.| ++..|..++.+|.+.|++++|.+.|+++. +++|++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al----~l~P~~ 103 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF----ALGKND 103 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH----hhCCCC
Confidence 55653 4677777888889999999999998885 344 57888899999999999999999988554 679999
Q ss_pred chhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 471 PSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.+|..++.+|...|++++|...|++..+..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999988744
No 110
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.77 E-value=2.5e-06 Score=82.61 Aligned_cols=219 Identities=9% Similarity=0.089 Sum_probs=159.1
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHcCCCCchhHHHHHhhHH----hhc-
Q 006672 272 SQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVDMY----AKC- 344 (636)
Q Consensus 272 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~- 344 (636)
.+....++|+.++.+++..+ +-+...++.--.++...+ +++++...++.++... |-+..+|+.-...+ .+.
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 33444567888888877643 223444555555566666 7888888888887765 44555555444444 444
Q ss_pred --CCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChH--HHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCc-----
Q 006672 345 --GNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--QAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ----- 412 (636)
Q Consensus 345 --g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~----- 412 (636)
++++++..+++.+.+ +|..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-.....+.|.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 778888888888775 57778888888888888888 999999999985332 45677766666666666
Q ss_pred -HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH-HHHHHHHHHHHHhccC---CCCchhHHHHHHHHHHcCCh
Q 006672 413 -VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ-GYQNSQNSFTKLLQLK---PKHPSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 413 -~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~l~---p~~~~~~~~l~~~~~~~g~~ 487 (636)
+++++++++.++.. -+-+...|+.+..++.+.|+..+ +.++.+ +.++++ |.++.++..++.+|.+.|+.
T Consensus 201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~al~~la~~~~~~~~~ 274 (306)
T 3dra_A 201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSL----QFVDLEKDQVTSSFALETLAKIYTQQKKY 274 (306)
T ss_dssp HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHH----TTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHH----HHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence 89999999988852 24467889899999999998655 444554 333444 78889999999999999999
Q ss_pred hHHHHHHHHHHh
Q 006672 488 KDVARVRTLMQR 499 (636)
Q Consensus 488 ~~A~~~~~~m~~ 499 (636)
++|.++++.+.+
T Consensus 275 ~~A~~~~~~l~~ 286 (306)
T 3dra_A 275 NESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
No 111
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.76 E-value=3.1e-07 Score=84.42 Aligned_cols=129 Identities=13% Similarity=0.095 Sum_probs=80.0
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG 345 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 345 (636)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...++.+++.. |.+...+..+...|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 37777777888888888887777653 3356667777777777777777777777777665 455666666666665444
Q ss_pred C--HHHHHHHHhhccCCChh--cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH
Q 006672 346 N--IEAASLVFGETKEKDLL--TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT 398 (636)
Q Consensus 346 ~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 398 (636)
. .+.+...++....++.. .|..+..++...|++++|+..|++.++ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 34455555555554432 233344455556666777777776666 556543
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.76 E-value=1e-07 Score=79.70 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=77.1
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
..|......|.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|+..|++.++ +.| +...|..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIR---LDSKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH---hhhhhhHHHHHHH
Confidence 3556667777777888888888877777 4454 55677777777778888888887777764 233 366777777
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
.+|...|++++|.+.|+++ ++++|+++.++..|.++
T Consensus 89 ~~~~~~~~~~~A~~~~~~a----l~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDA----LQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH----HHHCcCCHHHHHHHHHh
Confidence 7888888888887777744 35677777777666554
No 113
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.73 E-value=2e-07 Score=85.81 Aligned_cols=127 Identities=10% Similarity=0.007 Sum_probs=86.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLS 444 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~ 444 (636)
+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|++..+. .+.+...|..++.+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 3445555666667777776666652 445566666666667777777777777766642 1234566677777777
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCCCc----------------hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPKHP----------------SSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
+.|++++|.+.++++. ++.|.+. ..+..++.+|...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~A~~~~~~al----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEAL----IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHH----HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHH----HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777776544 3445444 788889999999999999999998888754
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=2.1e-07 Score=91.39 Aligned_cols=181 Identities=10% Similarity=-0.062 Sum_probs=99.7
Q ss_pred HHHhcCCcHHHHHHHHHHHHc----CCC-CchhHHHHHhhHHhhcCCHHHHHHHHhhccC-------C--ChhcHHHHHH
Q 006672 305 ACAKVGALEAGVRVHNYISCN----DFG-LKGAIGTALVDMYAKCGNIEAASLVFGETKE-------K--DLLTWTAMIW 370 (636)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~ 370 (636)
.+...|++++|...+....+. +-+ .-..+++.+..+|.+.|++++|...|++..+ + -..+++.+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444556666666655554432 100 0123455555666666666666555554332 1 1235666666
Q ss_pred HHHHcCChHHHHHHHHHHhHcCCC----CC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhc---CCCCC-hhHHHHHHH
Q 006672 371 GLAIHGRYEQAIQYFKKMMYSGTE----PD-GTVFLAILTACWYSGQVKLALNFFDSMRFDY---FIEPS-VKHHTVVVN 441 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~g~~----p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~l~~ 441 (636)
.|.. |++++|+..|++..+.... +. ..++..+...+...|++++|...|++..+.. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 7766 7777777777776652100 01 2456667777777888888888777776421 11111 235566666
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhccCCCCchh-----HHHHHHHHHHcCChhHHHH
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSS-----YVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~-----~~~l~~~~~~~g~~~~A~~ 492 (636)
++...|++++|...++++ + ++|....+ ...++..| ..|+.+.+.+
T Consensus 204 ~~~~~g~~~~A~~~~~~a----l-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRES----Y-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHH----T-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH----h-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 777778888888877744 3 45543322 33444444 4566554444
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.71 E-value=1.4e-07 Score=101.43 Aligned_cols=148 Identities=9% Similarity=-0.050 Sum_probs=107.4
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHH
Q 006672 274 NGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLV 353 (636)
Q Consensus 274 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (636)
.|++++|+..|++..+.. +-+...+..+...+...|++++|.+.++...+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478889999998887653 3356778888888888999999999999988765 55678888899999999999999999
Q ss_pred HhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc---CcHHHHHHHHHHhHh
Q 006672 354 FGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS---GQVKLALNFFDSMRF 425 (636)
Q Consensus 354 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~---g~~~~a~~~~~~m~~ 425 (636)
|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++... |+.++|.+.+++..+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ--LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 988764 4567888888999999999999999999888 4555 56777888888888 899999999998875
No 116
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.69 E-value=1e-07 Score=82.32 Aligned_cols=109 Identities=10% Similarity=-0.003 Sum_probs=85.4
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 384 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.|+++.. +.|+ ...+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|.+.++++.
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-- 82 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA-- 82 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH--
Confidence 3455544 5555 346666777888889999999999888752 23357788888889999999999999888554
Q ss_pred HhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 463 LLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 463 ~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+++|+++..|..++.+|...|++++|...+++..+.
T Consensus 83 --~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 83 --VMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp --HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 668999999999999999999999999999988774
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=1.2e-06 Score=80.54 Aligned_cols=132 Identities=7% Similarity=-0.026 Sum_probs=110.3
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcC
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSG 411 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 411 (636)
.+..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 34566778889999999999999998888899999999999999999999999999884 454 568888889999999
Q ss_pred cHHHHHHHHHHhHhhcCC-------------CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 412 QVKLALNFFDSMRFDYFI-------------EP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~-------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
++++|.+.|++..+...- .| ....+..++.+|.+.|++++|.+.++++ +++.|.+
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a----l~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA----TSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH----HHcCccc
Confidence 999999999998852211 11 1378899999999999999999999855 4678865
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.68 E-value=2.1e-06 Score=79.09 Aligned_cols=174 Identities=8% Similarity=-0.024 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC----CHHHHHHHH
Q 006672 279 KALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG----NIEAASLVF 354 (636)
Q Consensus 279 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 354 (636)
+|+.+|++..+.| +...+..+...+...+++++|...|....+.+ ++..+..|..+|.. + +.++|.+.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4556666666654 45555566666666677777777777766654 45556666666666 5 777777777
Q ss_pred hhccC-CChhcHHHHHHHHHH----cCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHh----cCcHHHHHHHHHHhH
Q 006672 355 GETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWY----SGQVKLALNFFDSMR 424 (636)
Q Consensus 355 ~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~ 424 (636)
++..+ .+..++..|...|.. .+++++|+.+|++..+.|... +...+..|...|.. .+++++|..+|++..
T Consensus 77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 77654 356677777777766 678888888888887744320 15566677777776 778888888888887
Q ss_pred hhcCCCCChhHHHHHHHHHHhc-C-----CchHHHHHHHHHHHH
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRV-G-----QDSQGYQNSQNSFTK 462 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 462 (636)
+ . .+++..+..|..+|... | ++++|...++++.+.
T Consensus 157 ~-~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 157 S-L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp H-T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred H-c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 5 2 34556677788877653 3 788999988877754
No 119
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.68 E-value=1e-05 Score=84.67 Aligned_cols=370 Identities=11% Similarity=-0.005 Sum_probs=219.8
Q ss_pred hHHHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCC--CCCcchHHHHHHHHHhCCC-chHHHHHHHHh
Q 006672 44 TKQLRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFT--PKNLHIFNVLIRGLAENSH-FQSCISHFVFM 120 (636)
Q Consensus 44 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m 120 (636)
+..++.++++.+.. +-. |+.+.|..+|++.. .|++..|...+.-..+.+. .+....+|+..
T Consensus 11 i~~aR~vyer~l~~---------------~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~a 74 (493)
T 2uy1_A 11 LSSPSAIMEHARRL---------------YMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFT 74 (493)
T ss_dssp -CCHHHHHHHHHHH---------------HHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHH
T ss_pred hHHHHHHHHHHHHH---------------CCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55566666666654 221 89999999998765 4788899998887776653 45677888887
Q ss_pred HHC-CCCC-CcccHHHHHHHHH----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCC
Q 006672 121 LRL-SVRP-NRLTYPFVSKSVA----SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKN 194 (636)
Q Consensus 121 ~~~-g~~p-~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 194 (636)
... |..| +...|...+..+. ..++.+.++.+|+.+++.....-..+|......- +......+.++..+..
T Consensus 75 l~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~~~--- 150 (493)
T 2uy1_A 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGDTL--- 150 (493)
T ss_dssp HHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHHHH---
T ss_pred HHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHHHh---
Confidence 753 5444 4455555555443 2356788999999999842221122333332221 1122233333332211
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcC--C-----HHHHHHHHhhCCC---CChhhH
Q 006672 195 KSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKG--D-----LKKAGELFEQMPE---KGVVSW 264 (636)
Q Consensus 195 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~---~~~~~~ 264 (636)
| .|..- ...++++...+.. .+...|...++.-...+ - .+.+..+|+++.. .....|
T Consensus 151 --~---~y~~a------r~~y~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW 216 (493)
T 2uy1_A 151 --P---IFQSS------FQRYQQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVY 216 (493)
T ss_dssp --H---HHHHH------HHHHHHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred --H---HHHHH------HHHHHHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 0 00000 0002222222222 13345555555432211 0 2345566766543 336678
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcC------------CCCchh
Q 006672 265 TAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCND------------FGLKGA 332 (636)
Q Consensus 265 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~ 332 (636)
-..+.-+.+.|+.++|..+|++.... |....+.. .++.....+.. ++.+.+.- ......
T Consensus 217 ~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~ 287 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDL 287 (493)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHH
Confidence 88888888999999999999999887 44332211 23222222222 23322210 011235
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccCCC--hhcHHHHHHHHH-HcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKEKD--LLTWTAMIWGLA-IHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~ 408 (636)
+|...+..+.+.++++.|..+|++...++ ...|......-. ..++.+.|..+|+...+. .|+ +..+...+.-..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~--~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK--HPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 66777777777889999999999984333 223332222222 234699999999999884 244 444555666667
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
..|+.+.|..+|+++. .....|...++.-.+.|+.+.+.++++++.+.+.
T Consensus 366 ~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 366 RIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 8899999999999873 2578889999888889999999999998887554
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.67 E-value=2.3e-06 Score=83.26 Aligned_cols=168 Identities=10% Similarity=-0.082 Sum_probs=123.9
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC--C-Ch------hcHHHHHHHHHHcCChHHHHHHHHHHhHcCC---CCC--H
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE--K-DL------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---EPD--G 397 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~ 397 (636)
..+...+..+...|++++|.+.+.+..+ + .. ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445567788889999999888876543 1 11 2344456667788999999999999876321 122 3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC--CC
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP--KH 470 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p--~~ 470 (636)
.+++.+...|...|++++|..+|++..+.....|+ ...|..++..|.+.|++++|.+.++++.+.....+. .-
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888889999999999999999988732112222 258899999999999999999999988765432211 12
Q ss_pred chhHHHHHHHHHHcCChhHH-HHHHHHHHh
Q 006672 471 PSSYVLLSNIYAAEGRWKDV-ARVRTLMQR 499 (636)
Q Consensus 471 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 499 (636)
..+|..++.+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56889999999999999999 777887654
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.65 E-value=9.1e-08 Score=92.64 Aligned_cols=191 Identities=10% Similarity=0.009 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHH
Q 006672 296 DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGL 372 (636)
Q Consensus 296 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 372 (636)
...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3445555556666666666666666666543 44666777777788888888888888877665 3566788888888
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
...|++++|+..|++..+ +.|+. ..+...+..... ..++... .... .....++......+...+ .|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~-~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS--LAKEQRLNFGDDIPSALR---IAKKKRW-NSIE-ERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH--HHHHTTCCCCSHHHHHHH---HHHHHHH-HHHH-HTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCccchhhHHHHHHHHHH---HHHHHHH-HHHH-HHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 899999999999988877 33432 111111211111 1111111 1122 133455566555555543 688888
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHHHHHHHHc-CChhHHHHHHHHHHhC
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAE-GRWKDVARVRTLMQRR 500 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 500 (636)
|.+.+++ .++++|.+......+...+.+. +++++|.++|+++.+.
T Consensus 154 A~~~~~~----al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQR----NHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSG----GGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHh----hhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9888774 4477898888888888878776 7799999999988664
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=5.4e-07 Score=82.04 Aligned_cols=157 Identities=12% Similarity=0.053 Sum_probs=102.5
Q ss_pred hcCCHHHHHH---HHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH----cCCCCC-HHHHHHHHHHHHhcCcHH
Q 006672 343 KCGNIEAASL---VFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY----SGTEPD-GTVFLAILTACWYSGQVK 414 (636)
Q Consensus 343 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~ 414 (636)
..|++++|.+ .+..-......++..+...+...|++++|+..+++..+ .+..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777 44332223455677777777778888888888777665 122222 346666777788888888
Q ss_pred HHHHHHHHhHhhcCCCC-----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHcCCh
Q 006672 415 LALNFFDSMRFDYFIEP-----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH--PSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~--~~~~~~l~~~~~~~g~~ 487 (636)
+|...+++..+...-.+ ....+..+...+...|++++|.+.++++.+..-...... ..++..++.+|...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 88888887764311122 134577788888888888888888887765433322111 23457888888888999
Q ss_pred hHHHHHHHHHHh
Q 006672 488 KDVARVRTLMQR 499 (636)
Q Consensus 488 ~~A~~~~~~m~~ 499 (636)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988888887765
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=5.8e-07 Score=78.79 Aligned_cols=130 Identities=9% Similarity=0.011 Sum_probs=106.0
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 440 (636)
...|..+...+...|++++|+..|++..+ ..|+ ..++..+..++...|++++|...+++..+. .+.+...|..++
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a 88 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRA 88 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34677788888899999999999999888 4454 667888888899999999999999998852 234577889999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH--HHHcCChhHHHHHHHHHHh
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI--YAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 499 (636)
.++.+.|++++|.+.++++. ++.|.+...+..+..+ +...|++++|...++...+
T Consensus 89 ~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 89 ASNMALGKFRAALRDYETVV----KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998655 5689888888555554 8888999999999887654
No 124
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.62 E-value=3.1e-07 Score=76.69 Aligned_cols=102 Identities=10% Similarity=0.103 Sum_probs=89.8
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 393 TEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 393 ~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
+.|+ ...+......+.+.|++++|++.|++..+. -+.++..|..++.+|.+.|++++|++.++++. +++|.++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~~~p~~~ 81 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCI----RLDSKFI 81 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH----Hhhhhhh
Confidence 5666 347788889999999999999999999852 23458899999999999999999999998554 6799999
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.+|..++.+|...|++++|.+.+++..+.
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999884
No 125
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.60 E-value=1.5e-06 Score=80.83 Aligned_cols=187 Identities=10% Similarity=-0.075 Sum_probs=125.0
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCch---hHHH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVR-A-NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKG---AIGT 335 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~ 335 (636)
...+..+...+.+.|++++|+..|+++.+.... | ....+..+..++...|++++|...++.+++... .+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHH
Confidence 445667788899999999999999999975321 2 135677788899999999999999999998652 222 2444
Q ss_pred HHhhHHhh------------------cCCHHHHHHHHhhccCC--C-hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCC
Q 006672 336 ALVDMYAK------------------CGNIEAASLVFGETKEK--D-LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE 394 (636)
Q Consensus 336 ~li~~~~~------------------~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 394 (636)
.+...|.+ .|+.++|...|+++.+. + ...+.+.... ..+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHH----------HHHHHHHH-----
Confidence 45555543 67899999999998873 2 2233222111 00111110
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 395 PDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 395 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
.....+...+...|++++|...|+.+.+.+.-.|. ...+..++.+|.+.|+.++|.+.++++. ...|++
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~----~~~~~~ 217 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA----ANSSNT 217 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HCCSCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH----hhCCCc
Confidence 11224456677889999999999888863322221 3567788888999999999988887444 345544
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.60 E-value=4.1e-07 Score=77.77 Aligned_cols=102 Identities=10% Similarity=-0.027 Sum_probs=80.4
Q ss_pred CCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 393 TEPDG-TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 393 ~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
..|+. ..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|...++++. +++|.++
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~ 86 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGA----LMDINEP 86 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCT
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCCCc
Confidence 44543 35566667788888888888888888752 23357778888888999999999998888554 5689899
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
..|..++.+|...|++++|.+.+++..+.
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 87 RFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999888764
No 127
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.59 E-value=3.6e-07 Score=90.90 Aligned_cols=145 Identities=14% Similarity=-0.008 Sum_probs=115.9
Q ss_pred HHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----------------HHHHHHHHHH
Q 006672 347 IEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----------------TVFLAILTAC 407 (636)
Q Consensus 347 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~ 407 (636)
+++|...|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+. ..+..+..++
T Consensus 129 ~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444332 2455788888888899999999999999888 44543 6888889999
Q ss_pred HhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCCh
Q 006672 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRW 487 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~ 487 (636)
...|++++|+..+++..+. -+.+...|..+..+|...|++++|.+.|+++. +++|.+..++..++.++...|++
T Consensus 207 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVL----QLYPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCSSCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH----HHCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999862 23358889999999999999999999998654 67999999999999999999999
Q ss_pred hHH-HHHHHHHHh
Q 006672 488 KDV-ARVRTLMQR 499 (636)
Q Consensus 488 ~~A-~~~~~~m~~ 499 (636)
++| ...++.|..
T Consensus 281 ~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 281 LAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 998 456666643
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.58 E-value=7.4e-07 Score=87.45 Aligned_cols=200 Identities=9% Similarity=-0.011 Sum_probs=146.8
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHH
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASL 352 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 352 (636)
..|++++|.+++++..+.. +.. + +...++++.|...|..+ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3577889999998877531 111 0 11146777777777654 456778899999999
Q ss_pred HHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC---CCC--HHHHHHHHHHHHhcCcHHHHHH
Q 006672 353 VFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT---EPD--GTVFLAILTACWYSGQVKLALN 418 (636)
Q Consensus 353 ~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~g~~~~a~~ 418 (636)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 8887654 12 34788899999999999999999999876211 122 3467788888888 99999999
Q ss_pred HHHHhHhhcCCCC----ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC--CchhHHHHHHHHHHcCChhHHHH
Q 006672 419 FFDSMRFDYFIEP----SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK--HPSSYVLLSNIYAAEGRWKDVAR 492 (636)
Q Consensus 419 ~~~~m~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~--~~~~~~~l~~~~~~~g~~~~A~~ 492 (636)
.|++......-.. ....+..+..+|.+.|++++|++.++++.+...+.... ....+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9998875221111 14678899999999999999999999887654332210 12367788888999999999999
Q ss_pred HHHHHH
Q 006672 493 VRTLMQ 498 (636)
Q Consensus 493 ~~~~m~ 498 (636)
.+++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.57 E-value=1.2e-06 Score=72.17 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=92.3
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVV 440 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~ 440 (636)
...|..+...+...|++++|++.|+++.+. .| +..++..+...+...|++++|..+++++.+. .+.+...+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 84 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 456777888888889999999999988874 34 3567778888888899999999999888752 234577888889
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcC
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEG 485 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g 485 (636)
..|.+.|++++|.+.++++. +.+|.++..+..++.++...|
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKAL----ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999888655 568888888888888776654
No 130
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.56 E-value=1.1e-07 Score=86.69 Aligned_cols=156 Identities=10% Similarity=-0.083 Sum_probs=108.7
Q ss_pred hhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-H----------------
Q 006672 338 VDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-G---------------- 397 (636)
Q Consensus 338 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~---------------- 397 (636)
+......|.++.|.+.++...+ .....|..+...+...|++++|+..|++..+ ..|+ .
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchhhHHHHHHHHHH
Confidence 3344455666666666654433 2445677888889999999999999999987 3333 2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..+..+..+|...|++++|...++...+. -+.+...+..++.+|...|++++|.+.++++. +++|.++.++..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAA----SLNPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHH----HHCCCcHHHHHHH
Confidence 57778888999999999999999999862 23457889999999999999999999998654 6799999999999
Q ss_pred HHHHHHcCChhHHH-HHHHHHHhCC
Q 006672 478 SNIYAAEGRWKDVA-RVRTLMQRRS 501 (636)
Q Consensus 478 ~~~~~~~g~~~~A~-~~~~~m~~~g 501 (636)
+.++...|+.+++. ..+..|...|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 163 ELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999988887776 5555555443
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.56 E-value=9.7e-07 Score=73.52 Aligned_cols=120 Identities=12% Similarity=0.006 Sum_probs=99.0
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
+...|..+...+...|++++|+..|++.... .| +...+..+...+...|++++|...++...+. .+.+...+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~ 86 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHH
Confidence 3456777888888999999999999998873 44 4667888888899999999999999998852 23347788999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChh
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWK 488 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~ 488 (636)
+.+|.+.|++++|.+.++++. ++.|.++..+..++.++...|+++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKAL----ELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhCCHHHHHHHHHHHH----hcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999998655 568999999999999999888753
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.54 E-value=1e-06 Score=73.84 Aligned_cols=118 Identities=14% Similarity=0.030 Sum_probs=98.1
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVV 439 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 439 (636)
+...|..+...+...|++++|+..|++..+ ..| +...+..+...+...|++++|...+++..+. .+.+...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 90 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRK 90 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHH
Confidence 456788888899999999999999999987 455 4667888888899999999999999998852 23457888999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCC
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~ 486 (636)
+.+|.+.|++++|.+.++++. +++|.+...+..++.++...|+
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKAL----DLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999998655 5688888899999988887664
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.53 E-value=2.9e-06 Score=80.29 Aligned_cols=135 Identities=10% Similarity=-0.064 Sum_probs=92.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-----hhhHHHHHHHHHhCC
Q 006672 203 NVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMRKGDLKKAGELFEQMPEKG-----VVSWTAMINGFSQNG 275 (636)
Q Consensus 203 ~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~g 275 (636)
-.+...+...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... ...+..+..++.+.|
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG 185 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC
Confidence 3455667778888888888877763 333355566667788888888888887665432 235677788888888
Q ss_pred ChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhh
Q 006672 276 EAEKALAMFFQMLDAGVRAN--DFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVD 339 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 339 (636)
++++|+..|++.......|. .........++.+.|+.++|..+|+.+.... |+..+..+|.+
T Consensus 186 ~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL~~ 249 (282)
T 4f3v_A 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAALKD 249 (282)
T ss_dssp CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHHhC
Confidence 88888888888875433253 2345556667778888888888888888765 22555555543
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.52 E-value=7.4e-06 Score=77.54 Aligned_cols=138 Identities=13% Similarity=-0.055 Sum_probs=97.0
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC--CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE--KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACW 408 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~ 408 (636)
+...+..++...|++++|.++|+.+.. |+......+...+.+.|++++|+..|+...... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 445567778888999999999988875 332355666667888899999999888655421 111 235667777888
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..|++++|+..|++... ....|. .........++.+.|+.++|...|+++. ..+|. ...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~----a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ----TTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCc-HHHHHHH
Confidence 88999999999888863 222253 4466777888888899999988888655 45776 5555444
No 135
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.48 E-value=1.2e-05 Score=77.76 Aligned_cols=226 Identities=8% Similarity=-0.066 Sum_probs=138.6
Q ss_pred HHHHHHHhhCCC--C-ChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CCcHH
Q 006672 247 KKAGELFEQMPE--K-GVVSWTAMINGFSQNG--EAEKALAMFFQMLDAGVRANDFTVVSALSAC----AKV---GALEA 314 (636)
Q Consensus 247 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~----~~~---~~~~~ 314 (636)
++|+..++.+.. | +..+|+.-...+...| ++++++++++.+.... +-+...++.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 445555554432 2 2345555555555555 6666666666666542 11222232222222 233 56666
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHH--HHHHHHhhccC---CChhcHHHHHHHHHHcCC------hHHHHH
Q 006672 315 GVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIE--AASLVFGETKE---KDLLTWTAMIWGLAIHGR------YEQAIQ 383 (636)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~g~------~~~A~~ 383 (636)
+..+++.+.+.. +-+..+|+.-.-++.+.|.++ ++.+.++++.+ .|..+|+.-...+...|+ ++++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 666666666554 455666666555566666665 67777776664 456677766666666665 788888
Q ss_pred HHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHH-HHHHHHHhHhhc-CCCCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 384 YFKKMMYSGTEPD-GTVFLAILTACWYSGQVKL-ALNFFDSMRFDY-FIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 384 ~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~-a~~~~~~m~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+++++. ..|+ ...|+.+-..+.+.|+... ...+..++.... .-..++..+..++++|.+.|+.++|.+.++.+.
T Consensus 208 ~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 208 YVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 8888888 4454 5677777777777776443 555666554311 113456788889999999999999999998654
Q ss_pred HHHhccCCCCchhHHHHHH
Q 006672 461 TKLLQLKPKHPSSYVLLSN 479 (636)
Q Consensus 461 ~~~~~l~p~~~~~~~~l~~ 479 (636)
+ +.+|-....|...++
T Consensus 286 ~---~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 286 S---KYNPIRSNFWDYQIS 301 (306)
T ss_dssp H---TTCGGGHHHHHHHHH
T ss_pred h---ccChHHHHHHHHHHh
Confidence 3 368877777776543
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.48 E-value=9.3e-07 Score=78.69 Aligned_cols=121 Identities=8% Similarity=0.076 Sum_probs=96.7
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH-HHhcCCc-
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL-LSRVGQD- 449 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~-~~~~g~~- 449 (636)
...|++++|+..+++..+ ..|+ ...+..+...|...|++++|...|++..+.. +.+...+..++.+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 456788889999988887 3454 5688888888999999999999999887521 2357788888888 7789998
Q ss_pred -hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 450 -SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 450 -~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++|...++++. +++|.++..+..++.+|...|++++|...++++.+..
T Consensus 97 ~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKAL----ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999988655 5689999999999999999999999999999998854
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=3.6e-07 Score=78.82 Aligned_cols=101 Identities=9% Similarity=0.010 Sum_probs=85.7
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...|..+...+.+.|++++|+..|+++.. ..|+ ...|..+..+|...|++++|...|++..+ +.| ++..|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHH
Confidence 455788888899999999999999999998 5676 66888888999999999999999999986 344 4788999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
++.+|.+.|++++|.+.|+++. ++.|++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al----~l~~~~ 137 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVI----QHSNDE 137 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HhCCCH
Confidence 9999999999999999998665 556754
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=9.1e-07 Score=76.20 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=86.2
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...+..+...+...|++++|+..|++... ..|+ ...|..+..+|...|++++|...|++..+ +.| ++..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV---MDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCCCchHHHH
Confidence 455677788889999999999999999988 5564 66788888899999999999999999885 334 5778889
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
++.+|...|++++|.+.|+++. ++.|.++....
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~ 127 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQ----ELIANXPEFXE 127 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHHTTCGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH----HHCcCCCcchH
Confidence 9999999999999999998654 56777665543
No 139
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.39 E-value=2.3e-06 Score=77.73 Aligned_cols=82 Identities=12% Similarity=0.018 Sum_probs=42.7
Q ss_pred hcCCHHHHHH---HHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCcH
Q 006672 242 RKGDLKKAGE---LFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLD----AGVRA-NDFTVVSALSACAKVGALE 313 (636)
Q Consensus 242 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~ll~~~~~~~~~~ 313 (636)
..|++++|.+ .+..-+.....++..+...|...|++++|+..+++... .+..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566666666 44443323355666666777777777777777766654 11111 1233444444555555555
Q ss_pred HHHHHHHHHH
Q 006672 314 AGVRVHNYIS 323 (636)
Q Consensus 314 ~a~~~~~~~~ 323 (636)
+|...+....
T Consensus 84 ~A~~~~~~al 93 (203)
T 3gw4_A 84 AARRCFLEER 93 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 140
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.38 E-value=1.5e-05 Score=77.37 Aligned_cols=172 Identities=9% Similarity=-0.065 Sum_probs=111.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH
Q 006672 261 VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM 340 (636)
Q Consensus 261 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 340 (636)
...+...+..+...|++++|++.+.+..+.... ...... ....+..+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~-----------------------------~~~~~~~~~~~ 124 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQ-----------------------------FLQWQYYVAAY 124 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHH-----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHH-----------------------------HHHHHHHHHHH
Confidence 344555666677777777777777766654211 111100 00112234445
Q ss_pred HhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHc-CCCCC-----HHHHHHHHH
Q 006672 341 YAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEPD-----GTVFLAILT 405 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~ll~ 405 (636)
|...|++++|...|++..+ .+ ..+|+.+...|...|++++|+..|++..+. ...|+ ..++..+..
T Consensus 125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHH
Confidence 5566666666666655432 11 347788888888999999999999888731 01222 147788888
Q ss_pred HHHhcCcHHHHHHHHHHhHhhc---CCCC-ChhHHHHHHHHHHhcCCchHH-HHHHHHHHHH
Q 006672 406 ACWYSGQVKLALNFFDSMRFDY---FIEP-SVKHHTVVVNLLSRVGQDSQG-YQNSQNSFTK 462 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~ 462 (636)
.|...|++++|..++++..+.. +... ....|..++.+|.+.|++++| ...++++..-
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999999999999999876421 1111 167889999999999999999 7778866543
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.38 E-value=7.2e-05 Score=73.24 Aligned_cols=231 Identities=10% Similarity=0.051 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHh
Q 006672 264 WTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVG-ALEAGVRVHNYISCNDFGLKGAIGTALVDMYA 342 (636)
Q Consensus 264 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 342 (636)
++.+-....+.+..++|++++.+++..+ +-+...++.--..+...+ .++++..+++.+++.. +-+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444444455566677888888887753 224444555555555666 4788888888887665 556667766666666
Q ss_pred hc-C-CHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChH--------HHHHHHHHHhHcCCCCCHHHHHHHHHHHHh
Q 006672 343 KC-G-NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYE--------QAIQYFKKMMYSGTEPDGTVFLAILTACWY 409 (636)
Q Consensus 343 ~~-g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 409 (636)
+. + +.+++.++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVS 213 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTT
T ss_pred HhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 65 5 77888888888876 45567776666666656565 899999999884322 46677777777777
Q ss_pred cCc-------HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCc--------------------hHHHHHHHHHHHH
Q 006672 410 SGQ-------VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQD--------------------SQGYQNSQNSFTK 462 (636)
Q Consensus 410 ~g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~ 462 (636)
.+. ++++++++++++. -.+-+...|+.+-.++.+.|+- .+..++..+....
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred ccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 765 7888888888875 1234577788777788877765 1122221111100
Q ss_pred H--hccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 463 L--LQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 463 ~--~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
. .+.++.++..+..|+.+|...|+.++|.++++.+.+
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 0 011246777888999999999999999999999864
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.38 E-value=3.3e-06 Score=70.22 Aligned_cols=95 Identities=6% Similarity=0.017 Sum_probs=64.2
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
.+......+...|++++|...|++..+. -+.+...|..++.+|.+.|++++|.+.++++. +++|.++..|..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~lg 79 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAI----EKDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH----HhCCCcHHHHHHHH
Confidence 4555555666677777777777666641 12345667777777777777777777776443 55777777777777
Q ss_pred HHHHHcCChhHHHHHHHHHHh
Q 006672 479 NIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+|...|++++|...+++..+
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 777777777777777777765
No 143
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=5.2e-07 Score=94.29 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=97.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLL 443 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~ 443 (636)
..+...+.+.|++++|++.|++..+ ..|+ ...+..+..++...|++++|.+.+++..+ +.| +...|..++.+|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3344456678899999999999988 4565 66888888999999999999999999885 344 578899999999
Q ss_pred HhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH--HHHcCChhHHHHHHHH
Q 006672 444 SRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI--YAAEGRWKDVARVRTL 496 (636)
Q Consensus 444 ~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 496 (636)
.+.|++++|.+.++++. +++|++...+..++.+ +.+.|++++|.+.+++
T Consensus 85 ~~~g~~~eA~~~~~~al----~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVV----KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHH----HHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHcCCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999998665 5689999999999888 8889999999999874
No 144
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.36 E-value=2.8e-06 Score=73.73 Aligned_cols=136 Identities=11% Similarity=0.093 Sum_probs=92.8
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hh
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTE-PD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VK 434 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 434 (636)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4556666677777777777777776552110 11 135666677777888888888888776542211111 45
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--CCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK--PKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+..+...+...|++++|.+.++++.+...+.. +.....+..++.+|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 677788888899999999999887775543332 12245788899999999999999999988765
No 145
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.36 E-value=6.7e-06 Score=71.82 Aligned_cols=127 Identities=9% Similarity=0.021 Sum_probs=89.3
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHH
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTAC 407 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~ 407 (636)
..+..+...+...|++++|...|++... .+..+|..+...+...|++++|+..+++..+ ..|+ ...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHH
Confidence 3455566667777777777777776543 3566777888888888888888888888887 3444 56777777888
Q ss_pred HhcCcHHHHHHHHHHhHhhcCCCCChhHH--HHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 408 WYSGQVKLALNFFDSMRFDYFIEPSVKHH--TVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
...|++++|...|++..+.. +.+...+ ..++..+.+.|++++|.+.+++..+.
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 88888888888888887522 1233344 33444477788888888888765443
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.36 E-value=1.1e-06 Score=84.97 Aligned_cols=15 Identities=7% Similarity=0.073 Sum_probs=6.9
Q ss_pred CChHHHHHHHHHHhH
Q 006672 376 GRYEQAIQYFKKMMY 390 (636)
Q Consensus 376 g~~~~A~~~~~~m~~ 390 (636)
|+.++|++.+++..+
T Consensus 149 ~~~~~A~~~~~~al~ 163 (281)
T 2c2l_A 149 AERERELEECQRNHE 163 (281)
T ss_dssp HHHHHHHTTTSGGGT
T ss_pred HHHHHHHHHHHhhhc
Confidence 444444444444443
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.36 E-value=4.5e-06 Score=69.36 Aligned_cols=110 Identities=8% Similarity=-0.057 Sum_probs=89.3
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVV 440 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~ 440 (636)
..|..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|...+++..+ +.| +...|..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE---KDPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCcHHHHHHHH
Confidence 4567778888899999999999999988 4555 66888888899999999999999999885 334 477889999
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHhccC------CCCchhHHHHHHHH
Q 006672 441 NLLSRVGQDSQGYQNSQNSFTKLLQLK------PKHPSSYVLLSNIY 481 (636)
Q Consensus 441 ~~~~~~g~~~~A~~~~~~~~~~~~~l~------p~~~~~~~~l~~~~ 481 (636)
.+|...|++++|.+.++++. +++ |.+...+..+..+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~al----~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAAR----TKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH----HHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHH----HhCcccCCchhHHHHHHHHHHHH
Confidence 99999999999999998665 456 77777776666554
No 148
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.36 E-value=5.6e-05 Score=73.31 Aligned_cols=198 Identities=7% Similarity=0.060 Sum_probs=106.6
Q ss_pred CCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcch---HHHHHHHHHhCCCchHHHHHHHHhHHCCC-CCCcc----
Q 006672 59 LFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHI---FNVLIRGLAENSHFQSCISHFVFMLRLSV-RPNRL---- 130 (636)
Q Consensus 59 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~---- 130 (636)
..|+..+...+...+.-.- ..+|..-...+... +...+..+...|++++|..++++..+... .|+..
T Consensus 42 ~~~~~~~l~~i~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 3u3w_A 42 VYPSMDILQGIAAKLQIPI-----IHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp CCCCHHHHHHHHHHHTCCT-----HHHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCH-----HHHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHH
Confidence 3566666655555544321 12333322222322 33345677788888888888888776321 12211
Q ss_pred cHHHHHHHHHccCChHHHHHHHHHHHHhCCC-CC----hhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHH
Q 006672 131 TYPFVSKSVASLSLLSLGRGLHCLIVKSGVE-YD----AFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVL 205 (636)
Q Consensus 131 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 205 (636)
.+..+...+...++++.|...+..+++.... ++ ..+++.+...|...|++++|...|++..+
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~------------- 183 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK------------- 183 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------
Confidence 1122344445556777777777777764322 22 12466667777777777777776665541
Q ss_pred HHHHHhcCChHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCCHHHHHHHHhhCC-------CCC--hhhHHHHHHHHHh
Q 006672 206 INGCSKIGYLRKAVELFGMMPKK---NVASWVSLIDGFMRKGDLKKAGELFEQMP-------EKG--VVSWTAMINGFSQ 273 (636)
Q Consensus 206 i~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~--~~~~~~li~~~~~ 273 (636)
.++..... ...++..+...|.+.|++++|...+++.. ... ..+|..+...|.+
T Consensus 184 ---------------~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 248 (293)
T 3u3w_A 184 ---------------QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248 (293)
T ss_dssp ---------------HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHH
T ss_pred ---------------HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 00000000 11234445555555555555555554432 111 4577888888888
Q ss_pred CCC-hHHHHHHHHHHHH
Q 006672 274 NGE-AEKALAMFFQMLD 289 (636)
Q Consensus 274 ~g~-~~~A~~l~~~m~~ 289 (636)
.|+ +++|.+.|++...
T Consensus 249 ~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 249 LEYEEAEIEDAYKKASF 265 (293)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHH
Confidence 884 5888888877654
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.33 E-value=8.4e-06 Score=66.25 Aligned_cols=110 Identities=12% Similarity=0.000 Sum_probs=75.6
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
..|..+...+...|++++|+..|++... ..| +...+..+...+...|++++|...+++..+. .+.+...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~ 80 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 4566667777777888888888887776 334 3556666777777778888888877777642 1234667777777
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
+|.+.|++++|.+.++++ ++++|.++..+..++.+
T Consensus 81 ~~~~~~~~~~A~~~~~~~----~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEG----LKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHH----HTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHH----HHcCCCCHHHHHHHHHh
Confidence 788888888887777644 36677777666666554
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.33 E-value=3.5e-06 Score=71.84 Aligned_cols=118 Identities=12% Similarity=0.077 Sum_probs=90.0
Q ss_pred HHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 353 VFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 353 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
.|+++... +...+..+...+.+.|++++|+..|++... ..|+ ...|..+..++...|++++|...|++..+.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 81 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-- 81 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 44444442 344666777888899999999999999988 5565 567888888999999999999999999852
Q ss_pred CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 429 IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 429 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
-+.++..+..++.+|...|++++|.+.++++. ++.|.++.......
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~~~ 127 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSAR----ALAAAQPAHEALAA 127 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHTCGGGHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCCcchHHHHH
Confidence 23357788899999999999999999998655 55777776655443
No 151
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.33 E-value=3.7e-06 Score=67.72 Aligned_cols=98 Identities=5% Similarity=-0.016 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC--CchhHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK--HPSSYV 475 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~--~~~~~~ 475 (636)
..+..+...+...|++++|...+++..+. .+.+...+..++.++.+.|++++|.+.++++. ++.|. +...+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~~ 80 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVI----NVIEDEYNKDVWA 80 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTSCCTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCcccchHHHHH
Confidence 35555666677777777777777777642 12346677777888888888888888877544 56787 788888
Q ss_pred HHHHHHHHc-CChhHHHHHHHHHHhCC
Q 006672 476 LLSNIYAAE-GRWKDVARVRTLMQRRS 501 (636)
Q Consensus 476 ~l~~~~~~~-g~~~~A~~~~~~m~~~g 501 (636)
.++.+|... |++++|.+.+++..+..
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 888888888 88888888888887654
No 152
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.32 E-value=2.1e-06 Score=89.75 Aligned_cols=119 Identities=9% Similarity=0.065 Sum_probs=87.0
Q ss_pred HHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh
Q 006672 334 GTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY 409 (636)
Q Consensus 334 ~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~ 409 (636)
+..+...|.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|++.+++..+ +.|+ ...+..+..+|..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 34455667778888888888887654 3567888888888889999999999998888 5565 5677888888888
Q ss_pred cCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHH--HHhcCCchHHHHHHH
Q 006672 410 SGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNL--LSRVGQDSQGYQNSQ 457 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 457 (636)
.|++++|.+.|++..+. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999888752 33 34455555555 778888888888876
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.31 E-value=6.4e-06 Score=72.16 Aligned_cols=109 Identities=11% Similarity=0.022 Sum_probs=90.2
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..+|...|++++|+..|++..+ +.| +...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATV---VDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 445678888889999999999999999988 5564 66888888899999999999999999885 334 4788999
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+..+|.+.|++++|.+.++++. +++|++...|...+
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGI----EAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----HHHSSSCCHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH----HhCCCchHHHHHHH
Confidence 9999999999999999998655 56888887665544
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=9e-06 Score=69.39 Aligned_cols=114 Identities=15% Similarity=0.030 Sum_probs=88.5
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhH
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKH 435 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 435 (636)
.+...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..+. .+.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHH
Confidence 3566778888888889999999999999887 5666 457777778888899999999999888752 1235777
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
+..+..+|.+.|++++|.+.++++. +++|.+...+..+..+.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCV----SLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH----HHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----HcCCCcHHHHHHHHHHH
Confidence 8888888999999999998888554 56888777776666554
No 155
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.31 E-value=3.1e-06 Score=69.90 Aligned_cols=95 Identities=11% Similarity=-0.056 Sum_probs=77.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+..+...+...|++++|...|++..+ ..| +...|..+..++.+.|++++|+..++++ ++++|+++..+..++
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a----l~l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHA----RMLDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCCCCHHHHHHHH
Confidence 44556677788888999888888875 334 5778888889999999999999988855 467899999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCC
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.+|...|++++|...+++..+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999887643
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.31 E-value=7.6e-06 Score=68.95 Aligned_cols=99 Identities=6% Similarity=-0.057 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHH
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
+...+..+...+...|++++|...|+..... .+.+...|..++.+|...|++++|...++++. +++|.++..|.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRAL----ELDGQSVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHH----HhCchhHHHHH
Confidence 3556777777788888888888888877652 12346778888888888888888888887554 56788888888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 476 LLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 476 ~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++.+|...|++++|...+++..+.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888888888764
No 157
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=2.7e-06 Score=70.98 Aligned_cols=93 Identities=6% Similarity=-0.007 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc-------
Q 006672 400 FLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP------- 471 (636)
Q Consensus 400 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~------- 471 (636)
+..+...+.+.|++++|+..|++..+ +.| ++..|..++.+|.+.|++++|++.++++.+ ++|++.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~---~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~a 83 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIE---LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE----VGRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HHHHTTCCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH----hCcccchhhHHHH
Confidence 33344444444444444444444443 122 244444455555555555555555543332 222221
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.+|..++.+|...|++++|++.+++..+
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2444555555555556665555555544
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=3.1e-05 Score=79.80 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=60.0
Q ss_pred HcCChHHHHHHHHHHhH----cCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC----ChhHHHHHHHHHH
Q 006672 374 IHGRYEQAIQYFKKMMY----SGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP----SVKHHTVVVNLLS 444 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l~~~~~ 444 (636)
..|++++|+.++++... .+..+. ..++..+...+...|++++|..+++.+.....-.. ....|..++.+|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 34555555555554432 122222 23444555555566666666665555443211111 1345555566666
Q ss_pred hcCCchHHHHHHHHHHHHHhccCCC---CchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 445 RVGQDSQGYQNSQNSFTKLLQLKPK---HPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 445 ~~g~~~~A~~~~~~~~~~~~~l~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|++++|..+++++.........+ -...+..++..+...|++++|...+.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6666666666665554333222111 01344455555555666666655555443
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.28 E-value=6.1e-06 Score=72.28 Aligned_cols=99 Identities=9% Similarity=0.004 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|++.++++. +++|.++..|..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~ 84 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELAT----VVDPKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHH
Confidence 457778888999999999999999999862 13368899999999999999999999998655 679999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.+|...|++++|.+.+++..+..
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.27 E-value=7.6e-06 Score=69.89 Aligned_cols=66 Identities=8% Similarity=0.016 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHH---HhccCCCCchhH----HHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTK---LLQLKPKHPSSY----VLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~l~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.|..+..++.+.|++++|+..++++.+. ..+++|+++..| ...+.++...|++++|+..|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 7888888999999999999988866532 334599999999 99999999999999999999999873
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.26 E-value=7.6e-06 Score=68.20 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=74.8
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-CCCC----hhHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF-IEPS----VKHH 436 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-~~p~----~~~~ 436 (636)
.++..+...+.+.|++++|+..|++.++ +.|+ ...|..+..+|...|++++|++.+++..+... ..++ ...|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567788888899999999999999888 5666 56788888889999999999999988764211 1111 2467
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
..++.++...|++++|++.|+++.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 788889999999999999998665
No 162
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=3.7e-06 Score=74.70 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=57.7
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhH-HhhcCCH--HH
Q 006672 273 QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDM-YAKCGNI--EA 349 (636)
Q Consensus 273 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~--~~ 349 (636)
..|++++|+..|++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+..+ |...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 3455555555555555432 2344455555555555555555555555555443 2344444445554 4455554 55
Q ss_pred HHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 350 ASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 350 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
|...|++..+ .+...|..+...|...|++++|+..|+++.+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555554432 2334455555555555555555555555555
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.23 E-value=6.3e-06 Score=85.65 Aligned_cols=131 Identities=11% Similarity=-0.006 Sum_probs=103.7
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC----------------HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD----------------GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
....|..+...|.+.|++++|+..|++.++ +.|+ ...|..+..+|.+.|++++|+..+++..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 344 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL 344 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 345677788888888999999999998887 3444 3678888899999999999999999998
Q ss_pred hhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHH-HHHHHHh
Q 006672 425 FDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVAR-VRTLMQR 499 (636)
Q Consensus 425 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~~ 499 (636)
+. -+.+...|..+..+|...|++++|...|+++ ++++|.+..++..++.++...|++++|.+ .+++|..
T Consensus 345 ~~--~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a----l~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 345 GL--DSANEKGLYRRGEAQLLMNEFESAKGDFEKV----LEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hc--CCccHHHHHHHHHHHHHccCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 62 2335788999999999999999999999855 57899999999999999999999988764 4555544
No 164
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.23 E-value=1.4e-05 Score=64.89 Aligned_cols=99 Identities=11% Similarity=0.071 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...++..... .+.+...+..++..+.+.|++++|.+.++++. ++.|.++..+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~ 77 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV----DLKPDWGKGYSR 77 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHH----HhCcccHHHHHH
Confidence 456777788899999999999999999852 23467889999999999999999999998665 568999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
++.+|...|++++|.+.+++..+.+
T Consensus 78 ~a~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 78 KAAALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 9999999999999999999998754
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.21 E-value=2.6e-05 Score=63.92 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYIS 323 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (636)
..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344445555555555555555555554431 2233333334444444444444444444433
No 166
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-05 Score=66.93 Aligned_cols=98 Identities=10% Similarity=0.090 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...|++..+. .+.+...+..++.+|...|++++|.+.++++. +++|.++..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~~~~ 89 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECI----QLEPTFIKGYTR 89 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHH----HhCCCchHHHHH
Confidence 457888888999999999999999998851 23367889999999999999999999998665 568999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhC
Q 006672 477 LSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 477 l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++.+|...|++++|.+.+++..+.
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999998874
No 167
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.19 E-value=1.2e-05 Score=79.69 Aligned_cols=96 Identities=14% Similarity=0.068 Sum_probs=78.7
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 439 (636)
..+|..+..+|.+.|++++|+..|++.++ +.|+ ...+..+..++...|++++|...|++..+ +.| +...+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l 270 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALE--LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHH
Confidence 46788889999999999999999999988 5565 66888888899999999999999999885 344 46788889
Q ss_pred HHHHHhcCCchHH-HHHHHHHHHH
Q 006672 440 VNLLSRVGQDSQG-YQNSQNSFTK 462 (636)
Q Consensus 440 ~~~~~~~g~~~~A-~~~~~~~~~~ 462 (636)
..++.+.|+.++| ...++++..+
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988 4566666544
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.18 E-value=2.1e-05 Score=63.10 Aligned_cols=103 Identities=14% Similarity=0.133 Sum_probs=79.4
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC--ChhHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP--SVKHHT 437 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~ 437 (636)
+...|..+...+...|++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+. .+. +...+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~ 80 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWA 80 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHH
Confidence 4567777888888888999999999888873 343 567777888888899999999999888752 122 477888
Q ss_pred HHHHHHHhc-CCchHHHHHHHHHHHHHhccCCCCc
Q 006672 438 VVVNLLSRV-GQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 438 ~l~~~~~~~-g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
.+..+|.+. |++++|.+.++++ ++..|.++
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~----~~~~p~~~ 111 (112)
T 2kck_A 81 AKADALRYIEGKEVEAEIAEARA----KLEHHHHH 111 (112)
T ss_dssp HHHHHHTTCSSCSHHHHHHHHHH----GGGCCCCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHH----hhcccCCC
Confidence 888899999 9999999888744 45666543
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.17 E-value=2.4e-05 Score=66.69 Aligned_cols=99 Identities=7% Similarity=-0.046 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP 471 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~ 471 (636)
+...+..+...+...|++++|.+.|++..+ ..|+ ...|..+...|.+.|++++|.+.++++. +++|.++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~----~~~~~~~ 99 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAI----EKDGGDV 99 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHTSCCH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHH----hhCccCH
Confidence 356788888899999999999999999985 4566 6788999999999999999999998665 5689999
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 472 SSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 472 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..|..++.+|...|++++|...+++..+..
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999998743
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=1.6e-05 Score=66.92 Aligned_cols=99 Identities=13% Similarity=0.025 Sum_probs=80.1
Q ss_pred CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHH
Q 006672 360 KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTV 438 (636)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 438 (636)
.+...|..+...+...|++++|+..|++... ..|+ ...+..+..++...|++++|...++...+. -+.+...+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~ 82 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF 82 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHH
Confidence 4566788888888899999999999999888 4455 567888888888999999999999988752 1335778888
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHH
Q 006672 439 VVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
++.+|...|++++|.+.++++.+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999866643
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.15 E-value=0.0001 Score=75.75 Aligned_cols=131 Identities=10% Similarity=0.031 Sum_probs=82.4
Q ss_pred HhhHHhhcCCHHHHHHHHhhccC-----C----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHc--C--CCCC-HHHHHH
Q 006672 337 LVDMYAKCGNIEAASLVFGETKE-----K----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--G--TEPD-GTVFLA 402 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g--~~p~-~~t~~~ 402 (636)
+...+...|+.+.|..+++.... . -..++..+...|...|++++|+.+++++... + -.|. ..++..
T Consensus 101 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~ 180 (434)
T 4b4t_Q 101 IEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLL 180 (434)
T ss_dssp HHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 33344445666666666554432 1 1235667777788888888888888776542 1 1222 236777
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcC-C--CCC--hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYF-I--EPS--VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK 467 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~-~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~ 467 (636)
++..|...|++++|..++++...... + +|. ...+..++..+...|++++|...+.++.+..-...
T Consensus 181 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~ 250 (434)
T 4b4t_Q 181 ESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLT 250 (434)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhh
Confidence 77788888888888888877653211 1 111 34567777777888888888888887766544433
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.15 E-value=3.7e-05 Score=63.83 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHH
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVV 439 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 439 (636)
+..+...+...|++++|+..|+++.+. .|+. ..+..+..++...|++++|...|+.+.+...-.+. ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 344566677788888888888888773 3442 36666777788888888888888887752211111 5567777
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHH
Q 006672 440 VNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLS 478 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~ 478 (636)
+.+|.+.|++++|.+.++++. +..|+++.......
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~a~~ 117 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVA----TQYPGSDAARVAQE 117 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH----HHSTTSHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH----HHCCCChHHHHHHH
Confidence 888888888888888887554 44676665544443
No 173
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.14 E-value=3.7e-05 Score=63.63 Aligned_cols=91 Identities=13% Similarity=0.057 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 345555555555666666666665555432 2234444444445555555555555555544432 22233333333333
Q ss_pred hhcCCHHHHHHHH
Q 006672 342 AKCGNIEAASLVF 354 (636)
Q Consensus 342 ~~~g~~~~A~~~~ 354 (636)
.+.|++++|...|
T Consensus 91 ~~~~~~~~A~~~~ 103 (131)
T 2vyi_A 91 SSLNKHVEAVAYY 103 (131)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHhCCHHHHHHHH
Confidence 3333333333333
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00067 Score=66.01 Aligned_cols=180 Identities=7% Similarity=-0.043 Sum_probs=118.1
Q ss_pred cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcC--CHHHHHHHHhhccC---CChhcHHHHHHHHHHcCC-hHHHHHHH
Q 006672 312 LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCG--NIEAASLVFGETKE---KDLLTWTAMIWGLAIHGR-YEQAIQYF 385 (636)
Q Consensus 312 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~~~ 385 (636)
++++..+++.++... |-+..+|+.-.-.+.+.| .++++..+++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 566777777777654 566777776666666666 47888888888775 566778877777777787 58888888
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhc--------------CcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc-----
Q 006672 386 KKMMYSGTEPDGTVFLAILTACWYS--------------GQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV----- 446 (636)
Q Consensus 386 ~~m~~~g~~p~~~t~~~ll~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~----- 446 (636)
.++++..+. |...|+.....+.+. +.++++++++..... --+-+...|+-+-.++.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 888884322 355666555554443 457888888888874 1233566676666666655
Q ss_pred ------CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH---HcCChhHHHHHHHHHHh
Q 006672 447 ------GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA---AEGRWKDVARVRTLMQR 499 (636)
Q Consensus 447 ------g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~ 499 (636)
+.++++++.++ ++++++|++.=.+..++.... ..|..+++...+.++++
T Consensus 246 ~~~~~~~~l~~el~~~~----elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 246 LSVEKSTVLQSELESCK----ELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp CCHHHHHHHHHHHHHHH----HHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH----HHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 34566666666 445778977433333322211 35667788888888876
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.11 E-value=8.8e-06 Score=69.49 Aligned_cols=108 Identities=10% Similarity=-0.021 Sum_probs=81.3
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-------------HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-------------GTVFLAILTACWYSGQVKLALNFFDSMRFD---- 426 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---- 426 (636)
.+......+.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..+++.++-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345566667778888888888888877 4444 127888888888899999999988888751
Q ss_pred cCCCCC-hhHH----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 427 YFIEPS-VKHH----TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 427 ~~~~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
..+.|+ ...| ...+.+|...|++++|++.|+++. +++|.|...+.-+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl----el~p~d~~~~~~~ 142 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV----EMIEERKGETPGK 142 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHHHHCCSCCTTH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH----hcCCCcHHHHHHH
Confidence 012665 5677 889999999999999999998554 6788877665544
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.10 E-value=1.9e-05 Score=65.13 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=73.4
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHH
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVN 441 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~ 441 (636)
.+..+...+.+.|++++|+..|++.++ ..|+ ...+..+..++...|++++|+..|++..+ +.| +...+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~la~ 93 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAV 93 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 456667778888899999999988888 5565 56777777888888999999999888875 344 4677888888
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
+|.+.|++++|.+.++++ ++++|.+
T Consensus 94 ~~~~~g~~~~A~~~~~~a----l~~~P~~ 118 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAW----LLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH----HC-----
T ss_pred HHHHcCCHHHHHHHHHHH----HHhCcCC
Confidence 889999999998888754 4667754
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.10 E-value=1.4e-05 Score=69.67 Aligned_cols=111 Identities=8% Similarity=-0.009 Sum_probs=80.3
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHc--------CC--------CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS--------GT--------EPD-GTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~--------~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
..+......+.+.|++++|+..|++.+.. .. .|. ...|..+..+|...|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34566677777788888888888777662 00 233 34677778888889999999999988875
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCc-hhHHHHHHH
Q 006672 426 DYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHP-SSYVLLSNI 480 (636)
Q Consensus 426 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~-~~~~~l~~~ 480 (636)
+.| ++..|..++.+|...|++++|...++++. +++|.++ .....+..+
T Consensus 92 ---~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al----~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 ---REETNEKALFRRAKARIAAWKLDEAEEDLKLLL----RNHPAAASVVAREMKIV 141 (162)
T ss_dssp ---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCGGGHHHHHHHHHHH
T ss_pred ---cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHH----hcCCCCHHHHHHHHHHH
Confidence 234 47788888999999999999998888544 6688877 445455443
No 178
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.09 E-value=5.3e-06 Score=82.44 Aligned_cols=128 Identities=11% Similarity=0.015 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH------------------HHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT------------------VFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------------------t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.|..+...+.+.|++++|+..|++.+. ..|+.. .|..+..++.+.|++++|+..+++..+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH--HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555566666677777777766665 344432 556666667777777777777777664
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH-HcCChhHHHHHHHHHHhC
Q 006672 426 DYFIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA-AEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 426 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~ 500 (636)
+.| +...|..+..+|...|++++|.+.|++ +++++|.++.++..|..+.. ..+..+++...+++|...
T Consensus 259 ---~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~----al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 ---EEEKNPKALFRRGKAKAELGQMDSARDDFRK----AQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH----TTC------------------------------------
T ss_pred ---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 223 456677777777777777777777663 34667777777777666633 345566666666666543
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.09 E-value=2.1e-05 Score=65.25 Aligned_cols=113 Identities=9% Similarity=-0.016 Sum_probs=78.9
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCC-CCC----hhHH
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFI-EPS----VKHH 436 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~----~~~~ 436 (636)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|...+++......- .++ ...+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45666777788888888888888888773 34 3556777777788888888888888877642211 122 6677
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
..++.+|.+.|++++|.+.++++. ++.| ++..+..+..+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSL----AEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH----HHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH----HhCC-CHHHHHHHHHHHH
Confidence 788888888888888888887655 3456 5666666555444
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.06 E-value=0.00038 Score=67.78 Aligned_cols=193 Identities=9% Similarity=0.009 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCC-HHHHHHHH
Q 006672 278 EKALAMFFQMLDAGVRANDFTVVSALSACAKVG--ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN-IEAASLVF 354 (636)
Q Consensus 278 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 354 (636)
++++.++..+.... +-+..+|..-...+...+ .++.+..+++.+.+.. +.+...|+.-.-++.+.|. ++++.+.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 44444444444432 223333333333333333 2445555555554433 3344444444444444444 34555555
Q ss_pred hhccC---CChhcHHHHHHHHHHc--------------CChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc------
Q 006672 355 GETKE---KDLLTWTAMIWGLAIH--------------GRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS------ 410 (636)
Q Consensus 355 ~~~~~---~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~------ 410 (636)
+.+.+ .|..+|+.....+... +.++++++.+.+... ..|+ ...|+.+-..+.+.
T Consensus 169 ~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCcccc
Confidence 54443 3444555544444333 346777788877777 5555 44555444333333
Q ss_pred -----CcHHHHHHHHHHhHhhcCCCCChhHHHH--HHH---HHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Q 006672 411 -----GQVKLALNFFDSMRFDYFIEPSVKHHTV--VVN---LLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNI 480 (636)
Q Consensus 411 -----g~~~~a~~~~~~m~~~~~~~p~~~~~~~--l~~---~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~ 480 (636)
+.++++++.++++.+ +.|+. .|.. ++. .....|..+++...+. ++.+++|...+-|.-|...
T Consensus 247 ~~~~~~~l~~el~~~~elle---~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~----~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE---LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFS----TLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHH----HHHHHCGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh---hCccc-chHHHHHHHHHHhhcccccHHHHHHHHH----HHHHhCcchhhHHHHHHHH
Confidence 457888888888875 45664 2322 221 1223455556555554 6678899888888777655
Q ss_pred HH
Q 006672 481 YA 482 (636)
Q Consensus 481 ~~ 482 (636)
+.
T Consensus 319 ~~ 320 (331)
T 3dss_A 319 FL 320 (331)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.05 E-value=3.9e-05 Score=63.66 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCCh---hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC---chhH
Q 006672 401 LAILTACWYSGQVKLALNFFDSMRFDYFIEPSV---KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH---PSSY 474 (636)
Q Consensus 401 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~---~~~~ 474 (636)
..+...+...|++++|...|+.+.+... .+. ..+..++.+|.+.|++++|.+.++++. +..|++ +.++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~----~~~p~~~~~~~~~ 79 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLV----SRYPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTSTTHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH----HHCCCCcccHHHH
Confidence 3455677889999999999999986322 223 578889999999999999999998665 568888 7789
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 475 VLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 475 ~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
..++.+|...|++++|...++++.+..
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999999999999999998743
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.03 E-value=6.1e-06 Score=67.62 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=32.0
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...+..++.+|.+.|++++|.+.++++. +++|+++.++..++.+|...|++++|...+++..+
T Consensus 27 ~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 27 AECYLGLGSTFRTLGEYRKAEAVLANGV----KQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344445555555555555555554332 33555555555555555555555555555555444
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.03 E-value=3.6e-05 Score=66.45 Aligned_cols=130 Identities=12% Similarity=0.068 Sum_probs=86.6
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHhhccC-----CC----hhcHHHHHHHHHHcCChHHHHHHHHHHhHcC----CCCC-HH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFGETKE-----KD----LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG----TEPD-GT 398 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~-~~ 398 (636)
++..+...|...|++++|...+++..+ ++ ..++..+...|...|++++|+..+++..+.. -.+. ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 445555566666666666666655443 11 1366777777888888888888888776521 1111 33
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhc---CCCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDY---FIEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTK 462 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 462 (636)
.+..+...+...|++++|.+.+++..+.. +..+ ....+..+...|...|++++|.+.++++.+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56667778888899999998888776421 1111 1456778888999999999999999877654
No 184
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.01 E-value=3.5e-05 Score=67.18 Aligned_cols=99 Identities=7% Similarity=0.028 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC------C---------CC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYF------I---------EP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFT 461 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------~---------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 461 (636)
..+......+...|++++|...|+....... - .| ....|..+..+|.+.|++++|+..++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al- 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL- 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH-
Confidence 4566777888999999999999999875200 0 12 24688999999999999999999998654
Q ss_pred HHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 462 KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 462 ~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+++|.++.+|..++.+|...|++++|...+++..+.
T Consensus 91 ---~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 ---KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ---HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 679999999999999999999999999999999874
No 185
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.01 E-value=1e-05 Score=73.44 Aligned_cols=161 Identities=12% Similarity=0.002 Sum_probs=80.1
Q ss_pred HHhcCCHHHHHHHHhhCCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCcHHH
Q 006672 240 FMRKGDLKKAGELFEQMPEK---GVVSWTAMINGFSQNGEAEKALAMFFQMLDAGV-RANDFTVVSALSACAKVGALEAG 315 (636)
Q Consensus 240 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~~~~~~a 315 (636)
....|++++|.+.++..... ....|..+...+...|++++|+..|++..+... .|+.... .+ +.-
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~---------~~~ 82 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--IL---------LDK 82 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--HH---------HHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--hH---------HHH
Confidence 33445555555555433221 244677777888888888888888888876421 1100000 00 000
Q ss_pred HHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 316 VRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
.. .....++..+..+|.+.|++++|...+++..+ .+...|..+..+|...|++++|+..|++..+
T Consensus 83 ---~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-- 150 (198)
T 2fbn_A 83 ---KK-------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-- 150 (198)
T ss_dssp ---HH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred ---HH-------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--
Confidence 00 00123445555566666666666666655443 3455666667777777777777777777766
Q ss_pred CCCC-HHHHHHHHHHHHhcCcHHHHH-HHHHHh
Q 006672 393 TEPD-GTVFLAILTACWYSGQVKLAL-NFFDSM 423 (636)
Q Consensus 393 ~~p~-~~t~~~ll~a~~~~g~~~~a~-~~~~~m 423 (636)
+.|+ ...+..+..++...++.+++. ..+..+
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454 345555555666666665555 344444
No 186
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.00 E-value=2.2e-05 Score=65.06 Aligned_cols=108 Identities=14% Similarity=0.111 Sum_probs=64.0
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCC--CCC----HHHHHH
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGT--EPD----GTVFLA 402 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~ 402 (636)
..+..+...+...|++++|...|++... .+...|..+...|...|++++|+..++++.+... .++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 3445555556666666666666655443 3445566666667777777777777777665311 111 445666
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNL 442 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~ 442 (636)
+..++...|++++|.+.|+.+.+ ..|+......+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA---EHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH---hCCCHHHHHHHHHH
Confidence 66677777777777777777764 23455544444443
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.99 E-value=4e-05 Score=76.99 Aligned_cols=123 Identities=13% Similarity=0.053 Sum_probs=99.2
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHc--------------CCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYS--------------GTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYF 428 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 428 (636)
.|..+...+.+.|++++|+..|++.++. ...|. ...|..+..+|.+.|++++|+..+++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE--- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH---
Confidence 4666777777888888888888777651 02333 45788888899999999999999999985
Q ss_pred CCC-ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHH
Q 006672 429 IEP-SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARV 493 (636)
Q Consensus 429 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~ 493 (636)
+.| +...|..+..+|.+.|++++|.+.++++. +++|.+...+..+..++...++.+++.+.
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al----~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQ----EIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 57889999999999999999999998655 67999999999999999998888877543
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.99 E-value=0.00057 Score=66.84 Aligned_cols=85 Identities=13% Similarity=0.049 Sum_probs=51.3
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhc-C-ChHH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLG-KTRGAFKVFDETPEKNKSESVLLWNVLINGCSKI-G-YLRK 217 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~ 217 (636)
.....++|.++.+.++..+ +.+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHH
Confidence 3344556777777777664 334555666666666666 4777777777766555 55666666655555554 4 5556
Q ss_pred HHHHHhhCCC
Q 006672 218 AVELFGMMPK 227 (636)
Q Consensus 218 A~~~~~~m~~ 227 (636)
++++++++..
T Consensus 144 EL~~~~k~L~ 153 (349)
T 3q7a_A 144 EIEYIHGSLL 153 (349)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHHH
Confidence 6666555553
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.91 E-value=0.00021 Score=75.89 Aligned_cols=168 Identities=11% Similarity=0.057 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCC----------HHHHHHHHhhccC---CChhcHHHHHHHHHHcC--C
Q 006672 313 EAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGN----------IEAASLVFGETKE---KDLLTWTAMIWGLAIHG--R 377 (636)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~ 377 (636)
++|.+.++.+++.. |-+..+|+.--..+.+.|+ ++++.+.++.+.+ ++..+|+.-.-.+.+.| +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 44455555555543 3344445444444444444 6777777777664 46667777777777778 6
Q ss_pred hHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcC-cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc---------
Q 006672 378 YEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSG-QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV--------- 446 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~--------- 446 (636)
++++++.++++.+. .| |...|+.-..++.+.| .++++.++++++++ .-+-+...|+....++.+.
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccccc
Confidence 68888888888884 44 3567777777777778 78888888888874 1233567777777776663
Q ss_pred -----CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhH
Q 006672 447 -----GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 447 -----g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
+.+++|.+.++++ ++++|.|..+|.-+..++.+.|+.++
T Consensus 201 ~~~~~~~~~eel~~~~~a----i~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNA----FFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHH----HHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHH----HhhCCCCccHHHHHHHHHhcCCCccc
Confidence 4567888877754 47799999999999999999988665
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=1.6e-05 Score=65.01 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=71.1
Q ss_pred HcCChHHHHHHHHHHhHcCC-CCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH
Q 006672 374 IHGRYEQAIQYFKKMMYSGT-EPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 374 ~~g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 451 (636)
..|++++|+..|++.++.+. .|+ ...+..+..++...|++++|...|++..+. .+-+...+..++.+|.+.|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 35788899999999988421 244 457888888999999999999999998852 23347788889999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCchhHH
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYV 475 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~ 475 (636)
|.+.++++. +..|.++....
T Consensus 80 A~~~~~~al----~~~p~~~~~~~ 99 (117)
T 3k9i_A 80 GVELLLKII----AETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHH----HHHCCCHHHHH
T ss_pred HHHHHHHHH----HhCCCcHHHHH
Confidence 999998665 45777765443
No 191
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=4.8e-05 Score=78.91 Aligned_cols=131 Identities=11% Similarity=0.019 Sum_probs=99.1
Q ss_pred HHHHcCChHHHHHHHHHHhHc---CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cCC-CCC-hhHHH
Q 006672 371 GLAIHGRYEQAIQYFKKMMYS---GTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFD----YFI-EPS-VKHHT 437 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~~~ 437 (636)
.+..+|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++..+- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888887652 12233 247888888999999999999988877532 221 232 56789
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhc-cCCCCch---hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 438 VVVNLLSRVGQDSQGYQNSQNSFTKLLQ-LKPKHPS---SYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 438 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-l~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
.|+.+|...|++++|+.+++++.+-... +.|+++. ....|..++...|++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765443 4566654 45678888999999999999999998754
No 192
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.84 E-value=7.6e-05 Score=77.46 Aligned_cols=100 Identities=11% Similarity=0.087 Sum_probs=74.7
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTVV 439 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 439 (636)
...|..+..+|.+.|++++|+..|++.++ +.|+ ...+..+..+|...|++++|...|+++.+ +.| +...+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l 391 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALG--LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE---VNPQNKAARLQI 391 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TC----CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 46788889999999999999999999988 5565 56888888899999999999999999875 445 46788888
Q ss_pred HHHHHhcCCchHHHH-HHHHHHHHHhcc
Q 006672 440 VNLLSRVGQDSQGYQ-NSQNSFTKLLQL 466 (636)
Q Consensus 440 ~~~~~~~g~~~~A~~-~~~~~~~~~~~l 466 (636)
..++.+.|+.++|.. ++.++..+..+.
T Consensus 392 ~~~~~~~~~~~~a~~~~~~~~f~k~~~~ 419 (457)
T 1kt0_A 392 SMCQKKAKEHNERDRRIYANMFKKFAEQ 419 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 899999888887764 455555554443
No 193
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=0.00028 Score=71.98 Aligned_cols=123 Identities=11% Similarity=0.093 Sum_probs=90.2
Q ss_pred HHHHHhcCcHHHHHHHHHHhHhhcC--CCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CCCCc---hh
Q 006672 404 LTACWYSGQVKLALNFFDSMRFDYF--IEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL-KPKHP---SS 473 (636)
Q Consensus 404 l~a~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l-~p~~~---~~ 473 (636)
+..+...|++++|..++++..+... +.|+ ..+++.++.+|...|++++|+.+++++.+-..+. .|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3445567788888888887764221 2222 5678888899999999999999999777554443 33333 57
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCC-cccHHHHHHHHHHHHHHHH
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-HKLAKEIHSKLEDIMAGAR 543 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~-~~~~~~i~~~l~~l~~~~~ 543 (636)
++.|+.+|...|++++|..++++..+.-. -..|. ||...+++..+.+....|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-----------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-----------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999876211 12343 9999999998888777665
No 194
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.70 E-value=0.00027 Score=59.59 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=94.3
Q ss_pred cCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHh----cCCch
Q 006672 375 HGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSR----VGQDS 450 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 450 (636)
.+++++|++.|++..+.| .|+.. +...|...+.+++|.++|++..+ . -++..+..|..+|.. .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHH
Confidence 356789999999999876 33333 66677777889999999999885 3 467888889999988 89999
Q ss_pred HHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH----cCChhHHHHHHHHHHhCCC
Q 006672 451 QGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA----EGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 451 ~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 502 (636)
+|.+.++++.+. .++.++..|+.+|.. .+++++|.+++++..+.|.
T Consensus 79 ~A~~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999988754 478899999999999 8999999999999999874
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.70 E-value=0.00014 Score=57.36 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=56.1
Q ss_pred ChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 432 SVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 432 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
++..+..++.+|.+.|++++|++.|+++. +++|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELV----ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 46778888999999999999999888554 568999999999999999999999999999988763
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00013 Score=58.43 Aligned_cols=94 Identities=13% Similarity=0.000 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC-----
Q 006672 396 DGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH----- 470 (636)
Q Consensus 396 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~----- 470 (636)
+...+..+...+...|++++|...|++..+. .+.+...|..++.+|.+.|++++|.+.++++ ++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG----LRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH----HTSCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH----HHhCCCccHHHH
Confidence 3455666777777888888888888877752 2235677788888888888888888888744 4678877
Q ss_pred -chhHHHHHHHHHHcCChhHHHHHHH
Q 006672 471 -PSSYVLLSNIYAAEGRWKDVARVRT 495 (636)
Q Consensus 471 -~~~~~~l~~~~~~~g~~~~A~~~~~ 495 (636)
...+..++.++...|++++|...++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 6677778888887777776655443
No 197
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.64 E-value=5.8e-05 Score=64.27 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=63.6
Q ss_pred hcCcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHhccCCCCchhHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQD----------SQGYQNSQNSFTKLLQLKPKHPSSYVLL 477 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~l~p~~~~~~~~l 477 (636)
+.+.+++|.+.++...+ +.| ++..|..+..++...|++ ++|+..|++ +++++|++..+|..+
T Consensus 14 r~~~feeA~~~~~~Ai~---l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~----AL~ldP~~~~A~~~L 86 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYK---SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE----ALLIDPKKDEAVWCI 86 (158)
T ss_dssp HHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH----HHHHCTTCHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHH----HHHhCcCcHHHHHHH
Confidence 34556666666666654 233 466666666666666554 477777774 457899999999999
Q ss_pred HHHHHHcC-----------ChhHHHHHHHHHHhCC
Q 006672 478 SNIYAAEG-----------RWKDVARVRTLMQRRS 501 (636)
Q Consensus 478 ~~~~~~~g-----------~~~~A~~~~~~m~~~g 501 (636)
+++|...| ++++|++.|++..+..
T Consensus 87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99999875 8999999999999843
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.62 E-value=0.00033 Score=56.71 Aligned_cols=80 Identities=6% Similarity=0.007 Sum_probs=60.3
Q ss_pred HHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 415 LALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
+|...|++..+ .-+.+...+..++..|.+.|++++|.+.++++. +++|.++..|..++.+|...|++++|...+
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al----~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAAL----DFDPTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH----HHCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35566666653 122346777888888888888888888887554 567888888888888888888888888888
Q ss_pred HHHHhC
Q 006672 495 TLMQRR 500 (636)
Q Consensus 495 ~~m~~~ 500 (636)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887763
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.60 E-value=0.00037 Score=53.32 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
...+..+...+...|++++|...|++..+. .+.+...+..+..+|.+.|++++|.+.++++. +++|.++..+..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----~~~p~~~~~~~~ 82 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPNNAEAKQN 82 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH----hcCCCCHHHHHH
Confidence 345666777778888888888888887752 12356778888888888999999988888554 568888888888
Q ss_pred HHHHHHHcC
Q 006672 477 LSNIYAAEG 485 (636)
Q Consensus 477 l~~~~~~~g 485 (636)
++.++...|
T Consensus 83 l~~~~~~~g 91 (91)
T 1na3_A 83 LGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 888877654
No 200
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.59 E-value=0.00026 Score=70.10 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...+.+.|++++|+..|++.... .|+...+ ...++.+++...+ ....+..+..+|
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-------~~~~~~~~~~~~l----------~~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMF-------QLYGKYQDMALAV----------KNPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHH-------TCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhh-------hhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence 44666777778888888888888887763 3433211 1112222221111 112455666666
Q ss_pred hhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH-HHHHHHHH-HHhcCcHHHH
Q 006672 342 AKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT-VFLAILTA-CWYSGQVKLA 416 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a-~~~~g~~~~a 416 (636)
.+.|++++|...|++..+ .+...|..+..+|...|++++|+..|++..+ +.|+.. .+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666777777666666543 3455666677777777777777777777665 445433 33333322 2234555666
Q ss_pred HHHHHHhH
Q 006672 417 LNFFDSMR 424 (636)
Q Consensus 417 ~~~~~~m~ 424 (636)
...|..|.
T Consensus 319 ~~~~~~~l 326 (338)
T 2if4_A 319 KEMYKGIF 326 (338)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 66666665
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.59 E-value=0.00048 Score=71.39 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=72.7
Q ss_pred hcHHHHHHHHHHcCChHHHHHHHHHHhHc-----C-CCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cCC-C
Q 006672 363 LTWTAMIWGLAIHGRYEQAIQYFKKMMYS-----G-TEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFD----YFI-E 430 (636)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~ 430 (636)
.+++.|...|...|++++|+.++++.++- | -.|+ ..+++.|...|...|++++|..++++..+. .|. .
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 36677777777777777777777776541 1 1233 347788888888888888888888876531 232 1
Q ss_pred CC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 431 PS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 431 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
|+ ....+.+..++...|++++|+.++.++.+..++-.|
T Consensus 432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 22 455677778888899999999999988877655444
No 202
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.56 E-value=0.00046 Score=53.39 Aligned_cols=70 Identities=13% Similarity=0.105 Sum_probs=60.1
Q ss_pred CCChhHHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCc
Q 006672 430 EPSVKHHTVVVNLLSRVGQ---DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 503 (636)
++++..+..+..++...++ .++|..+++++ ++++|+++.++..++..+.+.|++++|+..|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A----L~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQA----LQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH----HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----HHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4568888888888875555 79999998855 4789999999999999999999999999999999987644
No 203
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.56 E-value=0.00029 Score=71.83 Aligned_cols=111 Identities=11% Similarity=0.026 Sum_probs=79.2
Q ss_pred hcCcHHHHHHHHHHhHhhc--CCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc-CCCC---chhHHHHH
Q 006672 409 YSGQVKLALNFFDSMRFDY--FIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL-KPKH---PSSYVLLS 478 (636)
Q Consensus 409 ~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l-~p~~---~~~~~~l~ 478 (636)
..|++++|..++++..+.. -+.|+ ..+++.|+.+|...|++++|+.+++++.+-..+. .|++ ..+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567788887777665321 12222 4678889999999999999999999776554443 3433 35788999
Q ss_pred HHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEECCEEEEecCCC-cccHHHHHHHHH
Q 006672 479 NIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVNGHVHRFEAGG-HKLAKEIHSKLE 536 (636)
Q Consensus 479 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~~~~~~~~~~~-~~~~~~i~~~l~ 536 (636)
.+|...|++++|..++++..+.-. -..|. ||...++...++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~-----------------~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIME-----------------VAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHH-----------------HHTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHH-----------------HHcCCCChHHHHHHHHHh
Confidence 999999999999999999876211 12343 998888776554
No 204
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.54 E-value=0.00042 Score=69.51 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=68.8
Q ss_pred ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC-ChhHHHH
Q 006672 361 DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP-SVKHHTV 438 (636)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~ 438 (636)
+...|..+..+|.+.|++++|+..+++.++ +.|+ ...+..+..+|...|++++|...|++..+ +.| +...+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---l~P~~~~~~~~ 346 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALE--IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---IAPEDKAIQAE 346 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888888899999999999999888 5565 56778888888899999999999988875 334 4666777
Q ss_pred HHHHHHhcCCchHHHH
Q 006672 439 VVNLLSRVGQDSQGYQ 454 (636)
Q Consensus 439 l~~~~~~~g~~~~A~~ 454 (636)
+..++.+.++.+++.+
T Consensus 347 l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 347 LLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777776666543
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.54 E-value=0.00013 Score=62.11 Aligned_cols=95 Identities=14% Similarity=0.033 Sum_probs=66.0
Q ss_pred HHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCc----------HHHHHHHHHHhHhhcCCCCC-hhHHHHHH
Q 006672 373 AIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQ----------VKLALNFFDSMRFDYFIEPS-VKHHTVVV 440 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~l~ 440 (636)
.+.+++++|++.+++..+ ..|+ ...|..+..++...++ +++|+..|++.++ +.|+ ...|.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHH
Confidence 344567777777777777 4554 4566666666666554 4588888888875 5564 67888888
Q ss_pred HHHHhcC-----------CchHHHHHHHHHHHHHhccCCCCchhHHH
Q 006672 441 NLLSRVG-----------QDSQGYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 441 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
.+|...| ++++|.+.|+++. +++|++......
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl----~l~P~~~~y~~a 130 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAV----DEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH----HHCTTCHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHH----HhCCCCHHHHHH
Confidence 8888764 8999999888554 779987644443
No 206
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00071 Score=53.96 Aligned_cols=91 Identities=12% Similarity=0.071 Sum_probs=66.8
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-------h
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS-------V 433 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~ 433 (636)
...|..+...+...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..+ +.|+ .
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~ 78 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR---YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCSSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCccHHHHHH
Confidence 45677777888888888888888888887 4454 56777788888888888888888888874 3454 4
Q ss_pred hHHHHHHHHHHhcCCchHHHHHHH
Q 006672 434 KHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 434 ~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
..+..+..++...|+.++|.+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHH
Confidence 556666777777777776655443
No 207
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.24 E-value=0.0094 Score=63.21 Aligned_cols=170 Identities=9% Similarity=-0.018 Sum_probs=121.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------cHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhc
Q 006672 275 GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA----------LEAGVRVHNYISCNDFGLKGAIGTALVDMYAKC 344 (636)
Q Consensus 275 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 344 (636)
...++|++.++++...+ +-+...|+.--.++...++ ++++.+.++.+.+.. +-+..+|..-.-.+.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467777777777653 2233444444444444455 778888888887765 56677777777777777
Q ss_pred C--CHHHHHHHHhhccC---CChhcHHHHHHHHHHcC-ChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhc-------
Q 006672 345 G--NIEAASLVFGETKE---KDLLTWTAMIWGLAIHG-RYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYS------- 410 (636)
Q Consensus 345 g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~------- 410 (636)
| +++++.+.++++.+ +|..+|+.-...+...| .++++++.++++++ ..|+ ...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~--~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHH--HCCCCccHHHHHHHHHHhhccccccc
Confidence 7 67888888888775 56778888888888888 78889999888887 4454 55676666655542
Q ss_pred -------CcHHHHHHHHHHhHhhcCCCC-ChhHHHHHHHHHHhcCCchH
Q 006672 411 -------GQVKLALNFFDSMRFDYFIEP-SVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 411 -------g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 451 (636)
+.++++.++++.... +.| +...|..+..++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~---~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH---HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHh---hCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999988875 334 57888889999988888655
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.19 E-value=0.0099 Score=58.08 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=88.0
Q ss_pred CChhcHHHHHHHHH--HcC---ChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHh---cC-----cHHHHHHHHHHhHh
Q 006672 360 KDLLTWTAMIWGLA--IHG---RYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWY---SG-----QVKLALNFFDSMRF 425 (636)
Q Consensus 360 ~~~~~~~~li~~~~--~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~---~g-----~~~~a~~~~~~m~~ 425 (636)
.+...|...+.+.. ..+ ...+|+.+|++.++ ..|+ ...+..+..+|.. .+ ........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 46667777666543 222 34788889999888 6777 3444444433321 11 11111122222211
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRS 501 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 501 (636)
....+.++..|..+.-.+...|++++|...++++. +++| +...|..++.++.-.|++++|.+.+++....+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl----~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGI----DLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 12235567788888777777899999999988665 5566 57788899999999999999999999988754
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.18 E-value=0.0013 Score=51.69 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=32.1
Q ss_pred hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 362 LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
...|..+...|...|++++|+..|++..+ ..|+ ...|..+..+|...|++++|.+.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555 3333 3345555555555555555555555544
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.08 E-value=0.0073 Score=50.58 Aligned_cols=107 Identities=11% Similarity=0.038 Sum_probs=45.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh----cCCHHHHH
Q 006672 276 EAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK----CGNIEAAS 351 (636)
Q Consensus 276 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~ 351 (636)
++++|+.+|++..+.| .|+.. +...|...+..++|.+.+....+.| ++.....|..+|.. .++.++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3455555555555554 22222 3333333344444555555444432 23333444444443 34444444
Q ss_pred HHHhhccC-CChhcHHHHHHHHHH----cCChHHHHHHHHHHhH
Q 006672 352 LVFGETKE-KDLLTWTAMIWGLAI----HGRYEQAIQYFKKMMY 390 (636)
Q Consensus 352 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~ 390 (636)
+.|++..+ .+..++..|...|.. .++.++|+..|++..+
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 44444332 233344444444444 3444444444444444
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.07 E-value=0.0018 Score=52.13 Aligned_cols=57 Identities=11% Similarity=-0.088 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 399 VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 399 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
.+..+..++...|++++|...|++..+. -+.+...|..++.+|.+.|++++|...++
T Consensus 21 ~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 21 LRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3333444444444444444444444321 01123344444444444444444444444
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.01 E-value=2.4e-06 Score=84.58 Aligned_cols=369 Identities=11% Similarity=0.129 Sum_probs=197.4
Q ss_pred CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006672 93 NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (636)
Q Consensus 93 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 172 (636)
.+..|..|..+....++..+|++.|-+. -|...|..++.++.+.|.+++-...+....+. ..++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3456889999999999999988766432 26677888999999999999888887766654 345556678999
Q ss_pred HHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 006672 173 MYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGEL 252 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~ 252 (636)
+|++.+++.+-.+++. .||+.-...+.+-|...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHH
Confidence 9999999776544332 6777788888888999999998888887765 122233333444444443322
Q ss_pred HhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchh
Q 006672 253 FEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGA 332 (636)
Q Consensus 253 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 332 (636)
-++ ..++.||-.+-.+|...+.+.-|.-.--.+. +.|| -...++..|...|.+++-+.+++.-+... .....
T Consensus 193 ArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmG 264 (624)
T 3lvg_A 193 ARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 264 (624)
T ss_dssp TTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHH
T ss_pred HHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHH
Confidence 111 1234555555555665555554433322222 1111 11223344455555555555555444221 23455
Q ss_pred HHHHHhhHHhhcCCHHHHHHHHh----hccC-------CChhcHHHHHHHHHHcCChHHHHHH-------------HHHH
Q 006672 333 IGTALVDMYAKCGNIEAASLVFG----ETKE-------KDLLTWTAMIWGLAIHGRYEQAIQY-------------FKKM 388 (636)
Q Consensus 333 ~~~~li~~~~~~g~~~~A~~~~~----~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m 388 (636)
+++-|.-.|+|-. .+.-.+-++ ++-- .....|.-++-.|.+-.+++.|... |.+.
T Consensus 265 mFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdi 343 (624)
T 3lvg_A 265 MFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 343 (624)
T ss_dssp HHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTT
T ss_pred HHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHH
Confidence 5555555555432 222222111 1111 1334566666666655555544321 1111
Q ss_pred hHc---------------CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhh-----c--CC--CCChhHHHHHHHHHH
Q 006672 389 MYS---------------GTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFD-----Y--FI--EPSVKHHTVVVNLLS 444 (636)
Q Consensus 389 ~~~---------------g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-----~--~~--~p~~~~~~~l~~~~~ 444 (636)
... ...| ...+-|+.++...=+...+.++|++.-.- + .+ .-+..+-.++-++|.
T Consensus 344 i~KVaN~EiyYKAi~FYL~e~P--~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~I 421 (624)
T 3lvg_A 344 ITKVANVELYYRAIQFYLEFKP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 421 (624)
T ss_dssp GGGCSCSHHHHHHHHHHTTSCC--TTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHhCh--HHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 100 0111 12334444444444444555555432100 0 00 112334456667777
Q ss_pred hcCCchHHHHHHH--------HHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHH
Q 006672 445 RVGQDSQGYQNSQ--------NSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVR 494 (636)
Q Consensus 445 ~~g~~~~A~~~~~--------~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 494 (636)
...+++.-...++ ..++++ +..+ -...--.-+.+|.++++|+++..+.
T Consensus 422 EEEDy~~LR~SId~ydNFD~i~LA~rL-EkHe-L~eFRrIAA~LYkkn~rw~qsi~l~ 477 (624)
T 3lvg_A 422 TEEDYQALRTSIDAYDNFDNISLAQRL-EKHE-LIEFRRIAAYLFKGNNRWKQSVELC 477 (624)
T ss_dssp HTTCCHHHHHTTSSCCCSCTTHHHHHH-HTCS-SHHHHHHHHHHHHTTCHHHHHSSCS
T ss_pred hhhhHHHHHHHHHHhccccHHHHHHHH-hhCc-hHHHHHHHHHHHHhcccHHHHHHHH
Confidence 7777765544443 222221 2111 2233334566788888888887664
No 213
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.95 E-value=0.022 Score=63.51 Aligned_cols=154 Identities=14% Similarity=0.102 Sum_probs=100.2
Q ss_pred HHHHhcCChHHHHH-HHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHH
Q 006672 172 DMYVQLGKTRGAFK-VFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAG 250 (636)
Q Consensus 172 ~~~~~~g~~~~A~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 250 (636)
......+++++|.+ ++..++ +......++..+.+.|.+++|+++.+. . ..-.......|++++|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHH
Confidence 34456788888888 554432 122337777888888999998887642 2 12234567789999999
Q ss_pred HHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCc
Q 006672 251 ELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLK 330 (636)
Q Consensus 251 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (636)
++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...++.+...++-+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~--- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK--- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC---
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc---
Confidence 9988774 457899999999999999999999987753 23344445556666655555444444331
Q ss_pred hhHHHHHhhHHhhcCCHHHHHHHHhh
Q 006672 331 GAIGTALVDMYAKCGNIEAASLVFGE 356 (636)
Q Consensus 331 ~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (636)
++.-...|.++|++++|.+++.+
T Consensus 739 ---~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 739 ---FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---hHHHHHHHHHcCCHHHHHHHHHH
Confidence 12333445556666666665433
No 214
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0082 Score=61.15 Aligned_cols=108 Identities=19% Similarity=0.111 Sum_probs=79.4
Q ss_pred HHHHHHcCChHHHHHHHHHHhHc---CCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cC-CCCC-hhH
Q 006672 369 IWGLAIHGRYEQAIQYFKKMMYS---GTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFD----YF-IEPS-VKH 435 (636)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~-~~p~-~~~ 435 (636)
+..+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|+.+++++..- +| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999999999888752 13343 247888888999999999999999877632 22 1222 567
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHhc-cCCCCchhHHH
Q 006672 436 HTVVVNLLSRVGQDSQGYQNSQNSFTKLLQ-LKPKHPSSYVL 476 (636)
Q Consensus 436 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-l~p~~~~~~~~ 476 (636)
++.|+.+|...|++++|+.+++++.+-... +.|+++.+-.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 899999999999999999999988765544 46766655443
No 215
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.89 E-value=0.0099 Score=44.98 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHH
Q 006672 262 VSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMY 341 (636)
Q Consensus 262 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 341 (636)
..|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++.+.+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 445555666666666666666666665542 2244455555555666666666666666655543 33444444444444
Q ss_pred h
Q 006672 342 A 342 (636)
Q Consensus 342 ~ 342 (636)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.0066 Score=61.76 Aligned_cols=100 Identities=11% Similarity=0.068 Sum_probs=72.0
Q ss_pred cCChHHHHHHHHHHhH---cCCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHhHhh----cCC-CCC-hhHHHHHHH
Q 006672 375 HGRYEQAIQYFKKMMY---SGTEPD----GTVFLAILTACWYSGQVKLALNFFDSMRFD----YFI-EPS-VKHHTVVVN 441 (636)
Q Consensus 375 ~g~~~~A~~~~~~m~~---~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~~~~l~~ 441 (636)
.|++++|+.++++.++ .-+.|+ ..+++.+..+|...|++++|..++++..+- +|- .|+ ..+|+.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888877665 223333 247888888999999999999888887532 231 233 567899999
Q ss_pred HHHhcCCchHHHHHHHHHHHHHhc-cCCCCchhH
Q 006672 442 LLSRVGQDSQGYQNSQNSFTKLLQ-LKPKHPSSY 474 (636)
Q Consensus 442 ~~~~~g~~~~A~~~~~~~~~~~~~-l~p~~~~~~ 474 (636)
+|...|++++|+.+++++.+-... +.|+++.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999988765543 456665443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.62 E-value=0.0047 Score=47.98 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=34.6
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCC-Chh-HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEP-SVK-HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
..+...|++++|...|++..+ ..| +.. .+..++.+|.+.|++++|.+.++++. +++|.++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al----~~~p~~~~~~ 72 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQ---TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI----ELNPDSPALQ 72 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH---HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCTTSTHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hcCCCcHHHH
Confidence 345556666666666666654 223 344 55566666666666666666655433 4455555444
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.40 E-value=0.022 Score=44.03 Aligned_cols=57 Identities=26% Similarity=0.259 Sum_probs=46.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HH-HHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 367 AMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GT-VFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
.....+...|++++|+..|++..+ ..|+ .. .+..+..++...|++++|.+.|++..+
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQ--TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH--HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345667788999999999999888 4555 45 777788888899999999999998875
No 219
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.22 E-value=0.047 Score=53.32 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 397 GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 397 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
..++..+...+...|++++|...++++.. +.|+...|..+..++.-.|+.++|.+.|+++. .++|..
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~---Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~Al----rL~P~~ 343 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGID---LEMSWLNYVLLGKVYEMKGMNREAADAYLTAF----NLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHSCSH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----hcCCCc
Confidence 44554444444445666666666666654 22555555555666666666666666665333 445543
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.21 E-value=0.22 Score=55.34 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=19.6
Q ss_pred hcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHH
Q 006672 343 KCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 343 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 388 (636)
.+|++++|.++.+.+. +...|..+...+.+.|+++.|++.|.++
T Consensus 664 ~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444444444443332 2334444444444444444444444443
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.16 E-value=0.072 Score=44.67 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchHH
Q 006672 378 YEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQG 452 (636)
Q Consensus 378 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 452 (636)
...+.+.|.+..+.|. ++..+...+..++.+++ +.++|..+++...+. . .| ..+.+-.+.-++.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 3456666666666554 67777777778888888 677999999998863 2 24 355666777788999999999
Q ss_pred HHHHHHHHHHHhccCCCCchhHHH
Q 006672 453 YQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 453 ~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
.+.+++ +++++|+|..+...
T Consensus 91 ~~y~~~----lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 91 LKYVRG----LLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHH----HHHHCTTCHHHHHH
T ss_pred HHHHHH----HHhcCCCCHHHHHH
Confidence 999984 45779987655443
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.92 E-value=0.058 Score=42.32 Aligned_cols=76 Identities=8% Similarity=0.024 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcC-----CCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch
Q 006672 398 TVFLAILTACWYSGQVKLALNFFDSMRFDYF-----IEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS 472 (636)
Q Consensus 398 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~ 472 (636)
.....+...+...|+++.|...|+...+... -.+....+..++.+|.+.|++++|...++++. +++|.++.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al----~l~P~~~~ 81 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL----ELDPEHQR 81 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----HHCTTCHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH----hcCCCCHH
Confidence 3444566666677777777777776654221 12346778888899999999999999888554 67888877
Q ss_pred hHHHH
Q 006672 473 SYVLL 477 (636)
Q Consensus 473 ~~~~l 477 (636)
+...+
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 65554
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.76 E-value=0.098 Score=43.87 Aligned_cols=83 Identities=10% Similarity=-0.073 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcC---CchHHHHHHHHHHHHHhccC-C-CCchhHHHHHHHHHHcCC
Q 006672 412 QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVG---QDSQGYQNSQNSFTKLLQLK-P-KHPSSYVLLSNIYAAEGR 486 (636)
Q Consensus 412 ~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~l~-p-~~~~~~~~l~~~~~~~g~ 486 (636)
....+++-|.+..+ .+ .++..+...+..++.+.+ +.+++..+++...+. + | ++...+..|+-+|.+.|+
T Consensus 13 ~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----~~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 13 DLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCccchHHHHHHHHHHHHHccC
Confidence 34556666666653 23 378889999999999988 667999998866653 4 5 457788899999999999
Q ss_pred hhHHHHHHHHHHhC
Q 006672 487 WKDVARVRTLMQRR 500 (636)
Q Consensus 487 ~~~A~~~~~~m~~~ 500 (636)
+++|.+.++.+.+.
T Consensus 87 Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 87 YEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999883
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.73 E-value=0.031 Score=52.32 Aligned_cols=87 Identities=10% Similarity=0.068 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhHhhcCCCCC---hhHHHHHHHHHHh-----cCCchHHHHHHHHHHHHHhccCCCC-chhHHHHHHHHHH
Q 006672 413 VKLALNFFDSMRFDYFIEPS---VKHHTVVVNLLSR-----VGQDSQGYQNSQNSFTKLLQLKPKH-PSSYVLLSNIYAA 483 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~ 483 (636)
...|...+++..+ +.|+ -..|..++..|.+ -|+.++|.+.|+++ ++++|.. ..++..++..++.
T Consensus 179 l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA----L~LnP~~~id~~v~YA~~l~~ 251 (301)
T 3u64_A 179 VHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL----TRYCSAHDPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH----HHHCCTTCSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH----HHhCCCCCchHHHHHHHHHHH
Confidence 3455555555553 4555 4466777777777 37788887777744 3667753 7777778887777
Q ss_pred c-CChhHHHHHHHHHHhCCCccCC
Q 006672 484 E-GRWKDVARVRTLMQRRSIKKDP 506 (636)
Q Consensus 484 ~-g~~~~A~~~~~~m~~~g~~~~~ 506 (636)
. |+.++|.+.+++........+|
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVP 275 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCS
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCC
Confidence 4 7788888888888775554334
No 225
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.25 E-value=0.23 Score=46.46 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=89.0
Q ss_pred cCCHHHHHHHHhhccCCCh--hcHHHHHHH-HHHc--C------ChHHHHHHHHHHhHcCCCCC---HHHHHHHHHHHHh
Q 006672 344 CGNIEAASLVFGETKEKDL--LTWTAMIWG-LAIH--G------RYEQAIQYFKKMMYSGTEPD---GTVFLAILTACWY 409 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~~~~--~~~~~li~~-~~~~--g------~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~ 409 (636)
.++...-.+.+.+..+.++ ..|..++.+ +... | ....|...+++.++ +.|+ ...|..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 3444444455555554433 356665553 2332 2 24677788888888 7777 4577778777877
Q ss_pred c-----CcHHHHHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhc-CCchHHHHHHHHHHHHHhccCCCC-chhHHHHHHH
Q 006672 410 S-----GQVKLALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRV-GQDSQGYQNSQNSFTKLLQLKPKH-PSSYVLLSNI 480 (636)
Q Consensus 410 ~-----g~~~~a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~ 480 (636)
. |+.++|.+.|++..+ +.| +..++..+.+.|++. |+.++|.+.++++. ...|.. +. ..+.+.
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL----~a~p~~~P~--~~lan~ 282 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL----AIDPESVPH--NKLLVI 282 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH----HCCGGGCSS--CHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCCCCCC--hhHHHH
Confidence 4 899999999999986 566 378888889988884 89999999888665 444432 22 233333
Q ss_pred HHHcCChhHHHHHHHHH
Q 006672 481 YAAEGRWKDVARVRTLM 497 (636)
Q Consensus 481 ~~~~g~~~~A~~~~~~m 497 (636)
++-++|..+++++
T Consensus 283 ----~~q~eA~~LL~~~ 295 (301)
T 3u64_A 283 ----LSQKRARWLKAHV 295 (301)
T ss_dssp ----HHHHHHHHHHHTH
T ss_pred ----HHHHHHHHHHHHh
Confidence 2334566655544
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.21 E-value=1 Score=38.75 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=26.4
Q ss_pred hhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHh
Q 006672 342 AKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMM 389 (636)
Q Consensus 342 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 389 (636)
..+|+++.|.++.+.+ .+...|..+......+|+++-|.+.|++..
T Consensus 16 L~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 4455666665555544 344556666666666666666666666543
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.21 E-value=0.11 Score=40.76 Aligned_cols=70 Identities=7% Similarity=-0.080 Sum_probs=57.9
Q ss_pred CChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhcc---CCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 431 PSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQL---KPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
.++.-+-.++..+.+.|+++.|...++.+.+..-.- .+..+.++..|+.+|.+.|++++|...++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 345566788999999999999999999888664321 2345678999999999999999999999999873
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.02 E-value=0.3 Score=39.36 Aligned_cols=93 Identities=9% Similarity=-0.015 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHH---HHHHHHHhHhhcCCCC--ChhHHHHHHHHHHhcCCchH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKL---ALNFFDSMRFDYFIEP--SVKHHTVVVNLLSRVGQDSQ 451 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 451 (636)
....+.+-|.+....|. |+..+-..+..++.++....+ ++.+++.+.+. -.| ..+..-.|.-++.|.|++++
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~--~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK--GSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT--SCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455566666555444 666666677778888876655 88999888752 123 23444556678899999999
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHH
Q 006672 452 GYQNSQNSFTKLLQLKPKHPSSYVL 476 (636)
Q Consensus 452 A~~~~~~~~~~~~~l~p~~~~~~~~ 476 (636)
|.+.++ .+++.+|.|..+...
T Consensus 93 A~~~~~----~lL~~eP~n~QA~~L 113 (126)
T 1nzn_A 93 ALKYVR----GLLQTEPQNNQAKEL 113 (126)
T ss_dssp HHHHHH----HHHHHCTTCHHHHHH
T ss_pred HHHHHH----HHHHhCCCCHHHHHH
Confidence 999988 455779987665543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.82 E-value=1.1 Score=38.49 Aligned_cols=104 Identities=10% Similarity=-0.058 Sum_probs=68.0
Q ss_pred HHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHH
Q 006672 71 SSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRG 150 (636)
Q Consensus 71 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 150 (636)
.....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|..... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445678888888877665 4566788888888888888888888887653 4445445555666665555
Q ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCC
Q 006672 151 LHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 151 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
+-+.....| -+|.....+.-.|+++++.++|.+.-
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 544444443 13444455666777777777775543
No 230
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.79 E-value=0.099 Score=39.98 Aligned_cols=44 Identities=11% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHhH
Q 006672 379 EQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSMR 424 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 424 (636)
++|..++++.++ ..|+. .....+...+...|++++|...|+++.
T Consensus 26 ~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444 33332 233333344444444444444444444
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.25 E-value=1.8 Score=35.06 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=14.5
Q ss_pred CchhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 006672 470 HPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSI 502 (636)
Q Consensus 470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 502 (636)
++....-++++|.+-|+..+|.+++.++-++|+
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344444444444444444444444444444443
No 232
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.21 E-value=1.8 Score=35.00 Aligned_cols=119 Identities=14% Similarity=0.013 Sum_probs=84.6
Q ss_pred cCCHHHHHHHHhhccC-CChhcHHHHHHHHHHcCChHHHHHHHHHHhHc-CCCC----------------CHHHHHHHHH
Q 006672 344 CGNIEAASLVFGETKE-KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYS-GTEP----------------DGTVFLAILT 405 (636)
Q Consensus 344 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p----------------~~~t~~~ll~ 405 (636)
.|.+++..++..+... .+..-||-+|.-....-+-+-..+.++..-+- .+.+ +..-+...+.
T Consensus 20 dG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ALd 99 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKALD 99 (172)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHHH
Confidence 5777888888877765 45556666676666666777777777765441 1111 1222444566
Q ss_pred HHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Q 006672 406 ACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLL 464 (636)
Q Consensus 406 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 464 (636)
.....|.-|+-.+++..+. .+.+|+++..-.+..+|.+.|+..+|.++..++.++++
T Consensus 100 ~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 6777778887777777766 36788999999999999999999999999999987754
No 233
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.39 E-value=3.8 Score=41.55 Aligned_cols=181 Identities=8% Similarity=0.012 Sum_probs=99.6
Q ss_pred CChHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-cCCCCchhHHHHHhh----HHhhc
Q 006672 275 GEAEKALAMFFQMLD-----AGVRANDFTVVSALSACAKVGALEAGVRVHNYISC-NDFGLKGAIGTALVD----MYAKC 344 (636)
Q Consensus 275 g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~----~~~~~ 344 (636)
|++++|++.+..+.+ .+..........++..|...++++...+.+..+.+ +|... .....+++ .....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhcC
Confidence 678889888776664 23455667788888899999999888777766654 33222 22223332 22222
Q ss_pred CCH--HHHHHHHhhccC---CC-------hhcHHHHHHHHHHcCChHHHHHHHHHHhHc--CCCCCH---HHHHHHHHHH
Q 006672 345 GNI--EAASLVFGETKE---KD-------LLTWTAMIWGLAIHGRYEQAIQYFKKMMYS--GTEPDG---TVFLAILTAC 407 (636)
Q Consensus 345 g~~--~~A~~~~~~~~~---~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~ 407 (636)
... +.-..+.+.... .- ......|...|...|++.+|..++.++... |..+.. ..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 222 222223322221 10 112344566677777777777777776542 222211 2344455666
Q ss_pred HhcCcHHHHHHHHHHhHhh-cCCCCC----hhHHHHHHHHHHhcCCchHHHHHHH
Q 006672 408 WYSGQVKLALNFFDSMRFD-YFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQ 457 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~ 457 (636)
...+++..|..+++++... ....+. ...|.+++..+...+++.+|...|.
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~ 242 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQ 242 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6777777777777665321 112222 2345666666666666666666555
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.28 E-value=0.7 Score=38.25 Aligned_cols=117 Identities=12% Similarity=0.243 Sum_probs=79.2
Q ss_pred CCCCCcchHHHHHHHHHhCCCc------hHHHHHHHHhHHCCCCCCcc----cHHHHHHH---HHccCChHHHHHHHHHH
Q 006672 89 FTPKNLHIFNVLIRGLAENSHF------QSCISHFVFMLRLSVRPNRL----TYPFVSKS---VASLSLLSLGRGLHCLI 155 (636)
Q Consensus 89 ~~~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~~---~~~~~~~~~a~~~~~~~ 155 (636)
|.+.|..+|=..+...-+.|++ +..+++|++.... ++|+.. .|..+.-- +...++.+.|+++|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3466888888888888888888 7888888887763 555432 22222111 12347889999999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHH
Q 006672 156 VKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLING 208 (636)
Q Consensus 156 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 208 (636)
++.+-.- ..+|......-.+.|+++.|++++......+ +.+.......+.-
T Consensus 87 ~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~~~le~a~~n 137 (161)
T 4h7y_A 87 RANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPLEMLEIALRN 137 (161)
T ss_dssp HHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCHHHHHHHHHH
T ss_pred HHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcHHHHHHHHHh
Confidence 8764333 7778777788888999999999998877665 4444444444443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.83 E-value=1.3 Score=36.75 Aligned_cols=109 Identities=13% Similarity=0.096 Sum_probs=74.0
Q ss_pred CCChhcHHHHHHHHHHcCCh------HHHHHHHHHHhHcCCCCCHH----HHHHHHH---HHHhcCcHHHHHHHHHHhHh
Q 006672 359 EKDLLTWTAMIWGLAIHGRY------EQAIQYFKKMMYSGTEPDGT----VFLAILT---ACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~----t~~~ll~---a~~~~g~~~~a~~~~~~m~~ 425 (636)
..|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|..+.- .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 8888888888774 666431 1222211 12344788889999988875
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhH
Q 006672 426 DYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSY 474 (636)
Q Consensus 426 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~ 474 (636)
. .-.- ...|......-.|+|+++.|.+++.++. .+.|.+....
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai----G~~~k~~~~l 131 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV----ERGAVPLEML 131 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH----HTTCBCHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh----ccCCCcHHHH
Confidence 3 2222 7777777777788999999998888555 4566554433
No 236
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.48 E-value=1.2 Score=37.64 Aligned_cols=95 Identities=9% Similarity=-0.054 Sum_probs=55.4
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-------hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC--------
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPS-------VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK-------- 467 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~-------- 467 (636)
-+..+...|.++.|+-+.+.+..-.+..|+ ..++..+++++...|++..|...|+++.+....+.
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 344555566666666555554322222222 13445566666666777777766666543332111
Q ss_pred -------------CCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 468 -------------PKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 468 -------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
+.+...-.-++.+|.+.|++++|+.+++.+
T Consensus 106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 106 TGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp -----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 112245567899999999999999998754
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.41 E-value=3.4 Score=40.91 Aligned_cols=94 Identities=9% Similarity=-0.050 Sum_probs=44.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCC----hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCch----hH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPS----VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPS----SY 474 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~----~~ 474 (636)
+...|...|++.+|.+++..+.++..-..+ .+.|..-+.+|...|++.++...+..+..-.-.+.| +|. ..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i~a~i~ 183 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKVQGALD 183 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHHHHHHH
Confidence 445555566666665555555543221111 344555555566666666666666554433322211 111 12
Q ss_pred HHHHHHHH-HcCChhHHHHHHHHH
Q 006672 475 VLLSNIYA-AEGRWKDVARVRTLM 497 (636)
Q Consensus 475 ~~l~~~~~-~~g~~~~A~~~~~~m 497 (636)
..-+-.+. ..++|.+|...|-+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHH
Confidence 22233344 456666665555443
No 238
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.31 E-value=0.0011 Score=66.11 Aligned_cols=201 Identities=13% Similarity=0.128 Sum_probs=113.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCC--CChHHHHHHHHHHHh
Q 006672 165 FVRVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPK--KNVASWVSLIDGFMR 242 (636)
Q Consensus 165 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~li~~~~~ 242 (636)
.+|..|..++.+.+++.+|.+.|=+ ..|...|..+|.+..+.|.+++-+.++.-.++ .++.+=+.|+.+|++
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAK 128 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHT
T ss_pred cHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHh
Confidence 3444555555555555554443321 22444455555555555555555555544442 334444555555555
Q ss_pred cCCHH----------------------------HHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 006672 243 KGDLK----------------------------KAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRA 294 (636)
Q Consensus 243 ~g~~~----------------------------~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 294 (636)
.+++. .|.-+|..+.. |.-|...+.+.|++..|.+.- . -.-
T Consensus 129 ~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaA---r---KAn 197 (624)
T 3lvg_A 129 TNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGA---R---KAN 197 (624)
T ss_dssp SCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTT---T---TCC
T ss_pred hCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHH---H---hcC
Confidence 55544 33333333222 233334444555555444321 1 123
Q ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHH
Q 006672 295 NDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWG 371 (636)
Q Consensus 295 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 371 (636)
+..||..+-.+|...+.+..|...--.++- .+.-...++..|-..|.+++-..+++.... ...-.++-|.-.
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 567899999999999988776554433332 222234578889999999998888887653 466788888888
Q ss_pred HHHcCChHHHHHHHHHH
Q 006672 372 LAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m 388 (636)
|++- ++++..+.++-.
T Consensus 273 YsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELF 288 (624)
T ss_dssp HHSS-CTTHHHHHHTTS
T ss_pred HHhc-CHHHHHHHHHHH
Confidence 8875 456666655543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.39 E-value=0.78 Score=49.55 Aligned_cols=122 Identities=15% Similarity=0.097 Sum_probs=74.9
Q ss_pred HHHHHcCC-hHHHHHHHHHHhHcCCCCCHHH-H-HHHHHHHHhcC-cHHHHHHHHHHhHhh-----cCCCCCh-------
Q 006672 370 WGLAIHGR-YEQAIQYFKKMMYSGTEPDGTV-F-LAILTACWYSG-QVKLALNFFDSMRFD-----YFIEPSV------- 433 (636)
Q Consensus 370 ~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t-~-~~ll~a~~~~g-~~~~a~~~~~~m~~~-----~~~~p~~------- 433 (636)
..+...|+ ++.|+.+|+++.+. .|...+ + ..++..+...+ .--+|.+++.+..+. ....+..
T Consensus 256 ~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~ 333 (754)
T 4gns_B 256 SFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLM 333 (754)
T ss_dssp HHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccccc
Confidence 33334455 57788888888773 343322 2 22233333322 222344444443321 0122211
Q ss_pred ----hHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHH
Q 006672 434 ----KHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLM 497 (636)
Q Consensus 434 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 497 (636)
.....-++.+...|+++-|+++.+++ +...|.+-.+|..|+.+|...|+|+.|+-.+..+
T Consensus 334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~A----V~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 334 NCMSDLLNIQTNFLLNRGDYELALGVSNTS----TELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----HHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CcchHHHHHHHHHHhccCcHHHHHHHHHHH----HhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12223345567789999999887754 5678999999999999999999999999998876
No 240
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.54 E-value=4.4 Score=32.53 Aligned_cols=85 Identities=11% Similarity=-0.051 Sum_probs=61.7
Q ss_pred cCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchH---HHHHHHHHHHHHhccC-C-CCchhHHHHHHHHHHc
Q 006672 410 SGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQ---GYQNSQNSFTKLLQLK-P-KHPSSYVLLSNIYAAE 484 (636)
Q Consensus 410 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~l~-p-~~~~~~~~l~~~~~~~ 484 (636)
......+.+-|..... .| .|+..+--.+..++.+.....+ ++.+++. ++..+ | ........|+-++.+.
T Consensus 14 ~~~l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~----l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE----LLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH----HTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHHHh
Confidence 3344555566665543 23 3788888889999999888777 6666664 33444 4 3456777899999999
Q ss_pred CChhHHHHHHHHHHhC
Q 006672 485 GRWKDVARVRTLMQRR 500 (636)
Q Consensus 485 g~~~~A~~~~~~m~~~ 500 (636)
|++++|.+..+.+.+.
T Consensus 88 g~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQT 103 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 9999999999999883
No 241
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=90.51 E-value=3.3 Score=31.30 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=40.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 300 (636)
..+...|++++|..+.+...-||++.|-+|-. .+.|..+++...+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 34667788888888888888888888876643 35667777777776776665 45444443
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.41 E-value=3 Score=31.44 Aligned_cols=60 Identities=10% Similarity=0.069 Sum_probs=44.1
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVV 300 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 300 (636)
..+...|++++|..+.+...-||++.|-+|-. .+.|..+++...+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45677888888888888888888888876643 46777888888777777776 55555544
No 243
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.69 E-value=23 Score=37.44 Aligned_cols=422 Identities=7% Similarity=-0.042 Sum_probs=221.1
Q ss_pred HHHHHHHHhcCC--hHHHHHHHHHHHHh-CCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCC
Q 006672 32 THIISLIHSSNS--TKQLRQIHAQIILH-NLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENS 108 (636)
Q Consensus 32 ~~~~~~l~~~~~--~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 108 (636)
..+..+....+. +. ++-..+.+. |.+.....-+.-+..+++.+++......+.. ++.+...-.....+....|
T Consensus 41 l~y~~l~~~l~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G 116 (618)
T 1qsa_A 41 LEYRQITDDLMNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTG 116 (618)
T ss_dssp HHHHHHHHTGGGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 345555444432 33 444444443 2222334455666777888899988887776 5555555556677788889
Q ss_pred CchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHh
Q 006672 109 HFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFD 188 (636)
Q Consensus 109 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 188 (636)
+..+|......+-..|- ........++..+.+.|.+ .+..++. -+......|+...|..+..
T Consensus 117 ~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~l----------------t~~~~~~-R~~~al~~~~~~~a~~l~~ 178 (618)
T 1qsa_A 117 QSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ----------------DPLAYLE-RIRLAMKAGNTGLVTVLAG 178 (618)
T ss_dssp CHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS----------------CHHHHHH-HHHHHHHTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCC----------------CHHHHHH-HHHHHHHCCCHHHHHHHHH
Confidence 88888888888776552 2334445555554443332 2222222 2345567778888888776
Q ss_pred hCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChH---HHHHHHHHHHhcCCHHHHHHHHhhCCC---CC--
Q 006672 189 ETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVA---SWVSLIDGFMRKGDLKKAGELFEQMPE---KG-- 260 (636)
Q Consensus 189 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~~~---~~-- 260 (636)
.+. .........++..+.. ...+....... .++.. .+...+.-+.+. +.+.|...|..... .+
T Consensus 179 ~l~----~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~ 249 (618)
T 1qsa_A 179 QMP----ADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNED 249 (618)
T ss_dssp TCC----GGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHH
T ss_pred hCC----HHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHH
Confidence 653 2222222333332222 23333333332 22222 111222223333 67888888866532 12
Q ss_pred --hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHh
Q 006672 261 --VVSWTAMINGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALV 338 (636)
Q Consensus 261 --~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (636)
...+..++..+...+...++...+....... ++.....-.+....+.|+++.+...+..+.... .......--+.
T Consensus 250 ~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ 326 (618)
T 1qsa_A 250 QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQA 326 (618)
T ss_dssp HHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHH
Confidence 1234444445555564566667777655432 333333334444456789998888887775422 12333344566
Q ss_pred hHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC---HH---HHHHHHHHHHhcCc
Q 006672 339 DMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD---GT---VFLAILTACWYSGQ 412 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~---t~~~ll~a~~~~g~ 412 (636)
.++...|+.++|..+|..+..+. +|-.++.+ .+.|..-. . ....+.+. .. .-...+..+...|.
T Consensus 327 ra~~~~g~~~~a~~~~~~~a~~~--~fYg~lAa-~~Lg~~~~-~------~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~ 396 (618)
T 1qsa_A 327 DLLLERGREAEAKEILHQLMQQR--GFYPMVAA-QRIGEEYE-L------KIDKAPQNVDSALTQGPEMARVRELMYWNL 396 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--SHHHHHHH-HHTTCCCC-C------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHhcCC--ChHHHHHH-HHcCCCCC-C------CCCCCChhHHhhhccChHHHHHHHHHHCCC
Confidence 67778899999999988887653 44333322 22232100 0 00001111 00 11223445678899
Q ss_pred HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccC---CCCchhHHHHHHHHHHcCChhH
Q 006672 413 VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLK---PKHPSSYVLLSNIYAAEGRWKD 489 (636)
Q Consensus 413 ~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~---p~~~~~~~~l~~~~~~~g~~~~ 489 (636)
...|...+..+.. + .+......+.....+.|..+.+.....+.. ..+ ..-|..|..++.-+++.-..+.
T Consensus 397 ~~~a~~ew~~~~~--~--~~~~~~~~la~~a~~~~~~~~~v~~~~~~~----~~~~~~~~~P~~y~~~i~~~a~~~gv~~ 468 (618)
T 1qsa_A 397 DNTARSEWANLVK--S--KSKTEQAQLARYAFNNQWWDLSVQATIAGK----LWDHLEERFPLAYNDLFKRYTSGKEIPQ 468 (618)
T ss_dssp HHHHHHHHHHHHT--T--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----CTTCHHHHSCCTTHHHHHHHHTTSSSCH
T ss_pred hhhHHHHHHHHHh--c--CCHHHHHHHHHHHHHCCChHHHHHHHHHHH----hhcchhhhCCcchHHHHHHHHHHcCCCH
Confidence 9999998888764 2 233334455666677788777765443211 000 0012345555666665555555
Q ss_pred HHHHHHHHHhCCCccC
Q 006672 490 VARVRTLMQRRSIKKD 505 (636)
Q Consensus 490 A~~~~~~m~~~g~~~~ 505 (636)
++-.---.++.+..|.
T Consensus 469 ~ll~Ai~~~ES~f~p~ 484 (618)
T 1qsa_A 469 SYAMAIARQESAWNPK 484 (618)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHhCCCCCC
Confidence 4433333445555554
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.28 E-value=15 Score=42.27 Aligned_cols=189 Identities=13% Similarity=0.048 Sum_probs=120.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCC--------------------
Q 006672 301 SALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEK-------------------- 360 (636)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------- 360 (636)
.++..+...+..+.+.++.... +.++...-.+..+|..+|++++|.+.|.+....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566667777666554332 344555556778899999999999999876431
Q ss_pred ------ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCC
Q 006672 361 ------DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDG----TVFLAILTACWYSGQVKLALNFFDSMRFDYFIE 430 (636)
Q Consensus 361 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 430 (636)
-..-|.-++..+.++|.++.++++-+..++..-.-+. ..|..+.+++...|++++|...+-.+.. ..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~-- 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP-- 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--
Confidence 0112566778888999999999988887764222121 2578888999999999999988877752 22
Q ss_pred CChhHHHHHHHHHHhcCCch------------HHHHHHHHHHHHHhccCCCC-chhHHHHHHHHHHcCChhHHHH-HHHH
Q 006672 431 PSVKHHTVVVNLLSRVGQDS------------QGYQNSQNSFTKLLQLKPKH-PSSYVLLSNIYAAEGRWKDVAR-VRTL 496 (636)
Q Consensus 431 p~~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~~~~~~l~p~~-~~~~~~l~~~~~~~g~~~~A~~-~~~~ 496 (636)
-.......+|..++..|..+ +..+++..-++... ++.+ +..|..|-.-+...|++..|.. +|+.
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~--~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~ 1046 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMI--NVESQPCWYNILFSWRYKHQNYRDAAAIIYEK 1046 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHH--HHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCC--ccccCCCHHHHhHhhhhccCChHHHHHHHHHH
Confidence 23455666776666655544 33334332222211 2222 3456666666777888876654 4666
Q ss_pred HHh
Q 006672 497 MQR 499 (636)
Q Consensus 497 m~~ 499 (636)
+.+
T Consensus 1047 ~~R 1049 (1139)
T 4fhn_B 1047 LSR 1049 (1139)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 245
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.42 E-value=21 Score=35.27 Aligned_cols=220 Identities=11% Similarity=0.025 Sum_probs=120.5
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCcHHHHHHHHHHHH--cCCCCchhHHH---
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLDAGVRAN-----DFTVVSALSACAKVGALEAGVRVHNYISC--NDFGLKGAIGT--- 335 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~--- 335 (636)
-++..|...|++.+|+.++.++.+.=-..| ...+..-+..|...+++..+...+..... ..+.+++.+..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 567888889999999888888876311112 12344555667788888888888877764 22323333322
Q ss_pred -HHhhHHh-hcCCHHHHHHHHhhccC----C------ChhcHHHHHHHHHHcCChHHHHHHHH-HHhHcCCCCCHHHHHH
Q 006672 336 -ALVDMYA-KCGNIEAASLVFGETKE----K------DLLTWTAMIWGLAIHGRYEQAIQYFK-KMMYSGTEPDGTVFLA 402 (636)
Q Consensus 336 -~li~~~~-~~g~~~~A~~~~~~~~~----~------~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~t~~~ 402 (636)
.-.-++. ..+++..|...|-+..+ - +...|..+ .+... ++..+.-.++. .....-..|+...+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL-~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLL-CKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHH-HHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 2233455 68888888777655421 1 12223222 22222 23222222221 1111112344445666
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYA 482 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~ 482 (636)
++.++ ..+++.+...+++.... .+..|+.....+-..+ .++.+....+. ..|-.......++..+.
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~---------~~Ir~~~L~~i--~~pYsrIsl~~iA~~l~ 327 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLY---------DTMLEQNLCRI--IEPYSRVQVAHVAESIQ 327 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHH---------HHHHHHHHHHH--HTTCSEEEHHHHHHHHT
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHH---------HHHHHHHHHHH--hHhhceeeHHHHHHHHC
Confidence 66654 56677777777766543 3444544322221111 12223333333 24666677777776654
Q ss_pred HcCChhHHHHHHHHHHhCCCc
Q 006672 483 AEGRWKDVARVRTLMQRRSIK 503 (636)
Q Consensus 483 ~~g~~~~A~~~~~~m~~~g~~ 503 (636)
- ..+++....-+|...|.-
T Consensus 328 l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 328 L--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp C--CHHHHHHHHHHHHHTTSS
T ss_pred c--CHHHHHHHHHHHHHCCCe
Confidence 3 678999999999988753
No 246
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=87.77 E-value=14 Score=32.54 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=7.0
Q ss_pred ChhHHHHHHHHHHhcCC
Q 006672 163 DAFVRVHLADMYVQLGK 179 (636)
Q Consensus 163 ~~~~~~~li~~~~~~g~ 179 (636)
|..+....+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 34444444444444443
No 247
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.57 E-value=14 Score=32.26 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=7.4
Q ss_pred CChhHHHHHHHHHHhcCC
Q 006672 162 YDAFVRVHLADMYVQLGK 179 (636)
Q Consensus 162 ~~~~~~~~li~~~~~~g~ 179 (636)
+|..+....+..+.+.|.
T Consensus 26 ~~~~vr~~A~~~L~~~~~ 43 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGD 43 (201)
T ss_dssp SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 334444444444444443
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=87.21 E-value=21 Score=33.92 Aligned_cols=181 Identities=12% Similarity=0.061 Sum_probs=108.3
Q ss_pred HHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHH----
Q 006672 208 GCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAM---- 283 (636)
Q Consensus 208 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l---- 283 (636)
.....|++=||.+. |.++..=|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 22 ~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 22 NKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHH
Confidence 34456777677665 456777788888888888876432 3345566776665554
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHhhHHhhcCCHHHHHHHHhh
Q 006672 284 FFQMLDAGVRANDFTVVSALSACAKVGALE-AGVRVHNYIS----CND--FGLKGAIGTALVDMYAKCGNIEAASLVFGE 356 (636)
Q Consensus 284 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 356 (636)
.+-..+.+++++......++..+.....-+ .=..+...++ +.| ..-++.....+...|.+.|++.+|+.-|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 444455688888888888877766533221 2233444443 222 224778888899999999999999987763
Q ss_pred ccCCChhcHHHHHHHHHHc---CChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHh
Q 006672 357 TKEKDLLTWTAMIWGLAIH---GRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 425 (636)
....+...+..|+.-+... |...++-- ..-..++ -|.-.|+...|..+|+...+
T Consensus 160 ~~~~s~~~~a~~l~~w~~~~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQVDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHhcCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 3323455555555444433 33322211 1111122 34457888888888876653
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.92 E-value=28 Score=35.12 Aligned_cols=221 Identities=10% Similarity=0.083 Sum_probs=127.8
Q ss_pred CCHHHHHHHHhhCC-----CCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHH----Hhc
Q 006672 244 GDLKKAGELFEQMP-----EKG----VVSWTAMINGFSQNGEAEKALAMFFQMLDA-GVRANDFTVVSALSAC----AKV 309 (636)
Q Consensus 244 g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~~~----~~~ 309 (636)
|+++.|.+.+-.+. ..| ......++..|...|+++...+.+..+... |..+.. ...++..+ ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhcC
Confidence 67888877765443 122 345677888999999999988887766643 333322 23344333 233
Q ss_pred CCcHHHHH--HHHHHHH--cC-CCC---chhHHHHHhhHHhhcCCHHHHHHHHhhccC----C-C----hhcHHHHHHHH
Q 006672 310 GALEAGVR--VHNYISC--ND-FGL---KGAIGTALVDMYAKCGNIEAASLVFGETKE----K-D----LLTWTAMIWGL 372 (636)
Q Consensus 310 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~-~----~~~~~~li~~~ 372 (636)
...+.... +.+.+.. .| +-. ...+...|...|...|++.+|.+++.++.. . + +..+..-+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332111 1111110 11 111 223446788899999999999999988753 1 1 34677777888
Q ss_pred HHcCChHHHHHHHHHHhH----cCCCCCH--HHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhc
Q 006672 373 AIHGRYEQAIQYFKKMMY----SGTEPDG--TVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRV 446 (636)
Q Consensus 373 ~~~g~~~~A~~~~~~m~~----~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~ 446 (636)
...+++.+|..++++... ....|+. ..+...+..+.+.+++.+|.+.| ..+.+.+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y----------------~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYL----------------QEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------------HHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHH----------------HHHHhccccc
Confidence 899999999999988743 2222221 23445555666777777765543 3345556666
Q ss_pred CCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 447 GQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 447 g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
++.......+..+.--. -+.|.++.--..+...+..
T Consensus 252 ~d~~~~~~~L~~~v~~~-iLa~~~~~~~~ll~~~~~~ 287 (445)
T 4b4t_P 252 SDEAKWKPVLSHIVYFL-VLSPYGNLQNDLIHKIQND 287 (445)
T ss_dssp SCHHHHHHHHHHHHHHH-HHSSCSSTTHHHHHSHHHH
T ss_pred CCHHHHHHHHHHHHHHH-HhCCCCchHHHHHHHHhhc
Confidence 66655555555443322 2455555545555555544
No 250
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.71 E-value=5.2 Score=30.43 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.4
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
+.-+..+-++.+....+-|++....+.+.||.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4556677777777788889999999999999999999999999998875443 33455665554
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.55 E-value=14 Score=30.30 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=12.5
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 474 YVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 474 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
...|+-++.+.|++++|.++.+.+.+
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444445555555555555544444
No 252
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=85.30 E-value=41 Score=35.52 Aligned_cols=115 Identities=8% Similarity=-0.057 Sum_probs=53.1
Q ss_pred ChHHHHHHHHHHhHcC-CCCCHH--HHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHH
Q 006672 377 RYEQAIQYFKKMMYSG-TEPDGT--VFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGY 453 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 453 (636)
+.+.|..+|....+.. +.+... ....+.......+...++...+..... ..++.....-.+..-.+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHHH
Confidence 5667777776665432 211111 222222233333423444444444332 1122222222222233557777777
Q ss_pred HHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006672 454 QNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQ 498 (636)
Q Consensus 454 ~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 498 (636)
..|+.+... .+..+....=++.++...|+.++|..+|+.+.
T Consensus 306 ~~~~~l~~~----~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 306 TWLARLPME----AKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHSCTT----GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccc----ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 776643221 01123334455666667777777777776654
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=84.94 E-value=4.1 Score=34.40 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=64.4
Q ss_pred HhhHHhhcCCHHHHHHHHhhccC-----CCh-------hcHHHHHHHHHHcCChHHHHHHHHHHhHcC-CCCCHH-HHHH
Q 006672 337 LVDMYAKCGNIEAASLVFGETKE-----KDL-------LTWTAMIWGLAIHGRYEQAIQYFKKMMYSG-TEPDGT-VFLA 402 (636)
Q Consensus 337 li~~~~~~g~~~~A~~~~~~~~~-----~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-t~~~ 402 (636)
-+..+...|.++.|+-+.+-+.. +++ .+...+..++...|++.+|...|++.++.. .-|... +...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 34556667777777666655332 221 144556666777777777777777764411 111111 1111
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIY 481 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~ 481 (636)
+-. ...... .....++.+.---+..+|.+.|+.++|+..++.+- ..-+.+.+-.+|++.|
T Consensus 106 ~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-----~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 106 TGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-----SRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-----GGGCCHHHHHHHHHHC
T ss_pred ccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-----chhcCHHHHHHHHHHh
Confidence 100 000000 01123344555557788999999999999887321 1223566666777665
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.73 E-value=1.8 Score=43.00 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCccCC
Q 006672 437 TVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR-----RSIKKDP 506 (636)
Q Consensus 437 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~ 506 (636)
..+++.+.+.|++++|....+.. +..+|-+-..|..|+.+|.+.|+..+|.+.|++..+ .|+.|.+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~----~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEAL----TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH----HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH----HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 44667777888888888776643 466888888888888888888888888888887644 4776654
No 255
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.66 E-value=28 Score=33.04 Aligned_cols=112 Identities=9% Similarity=-0.004 Sum_probs=55.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHH----HHHhHHCCCCCCcccHHHHHHHHH
Q 006672 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH----FVFMLRLSVRPNRLTYPFVSKSVA 140 (636)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~~ 140 (636)
.+.++..-|.+.+++++|..++-. -...+.+.|+...|-++ .+...+.++++|..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666667777777777776543 12234455665555443 333344566666666666665554
Q ss_pred ccCChH-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006672 141 SLSLLS-LGRGLHCLIVK----SG--VEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (636)
Q Consensus 141 ~~~~~~-~a~~~~~~~~~----~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 187 (636)
.....+ .-..+...+++ .| ...|+.....+...|.+.|++.+|+..|
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 422111 11222222222 21 1234455555555555555655555544
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=84.43 E-value=22 Score=40.91 Aligned_cols=52 Identities=13% Similarity=0.094 Sum_probs=34.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 006672 235 SLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMFFQM 287 (636)
Q Consensus 235 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 287 (636)
.++..+.+.+..+.|.++..-.+.. ...--.+..+|...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~-~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSD-PIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCC-HHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCC-cHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3555566667777777665555443 333345667788888888888888765
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.37 E-value=9.8 Score=30.71 Aligned_cols=78 Identities=8% Similarity=-0.024 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCC
Q 006672 392 GTEPDGTVFLAILTACWYSG---QVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKP 468 (636)
Q Consensus 392 g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p 468 (636)
+-.|+..|--.+..++.++. +..+|+.+++.+.+. +..-..+..-.+.-++.|.|++++|.+..+ .+++++|
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d----~lL~~eP 109 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVD----TLFEHER 109 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHH----HHHTTCT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHH----HHHhhCC
Confidence 34455555555566666655 445788888887752 211124455566778889999999988877 5567888
Q ss_pred CCchhH
Q 006672 469 KHPSSY 474 (636)
Q Consensus 469 ~~~~~~ 474 (636)
.|..+-
T Consensus 110 ~N~QA~ 115 (134)
T 3o48_A 110 NNKQVG 115 (134)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 875443
No 258
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=83.97 E-value=47 Score=35.21 Aligned_cols=83 Identities=7% Similarity=0.018 Sum_probs=41.0
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhh---c
Q 006672 268 INGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAK---C 344 (636)
Q Consensus 268 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~ 344 (636)
...+.-.|+++.|++++-+. ...+.+.+...+..+ |-+.....++..- .+ .| ..-+..||..|.+ .
T Consensus 301 f~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~~ 369 (661)
T 2qx5_A 301 LQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKIDSSTRLTK--KP-KR-DIRFANILANYTKSFRY 369 (661)
T ss_dssp HHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCCCcccccC--CC-cc-cccHHHHHHHHHHHhhc
Confidence 44556678888888877644 244555555555443 3222211111110 01 11 1124566767754 5
Q ss_pred CCHHHHHHHHhhccCCC
Q 006672 345 GNIEAASLVFGETKEKD 361 (636)
Q Consensus 345 g~~~~A~~~~~~~~~~~ 361 (636)
.+..+|.+.|--+.-++
T Consensus 370 td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 370 SDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TCHHHHHHHHHGGGGSC
T ss_pred CCHHHHHHHHHHHhccC
Confidence 78888888777664443
No 259
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=83.68 E-value=4.9 Score=43.42 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=35.2
Q ss_pred HHHcCChHHHHHHHHHHhHcCCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 372 LAIHGRYEQAIQYFKKMMYSGTEPDG-TVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 372 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
+...|+++-|+++-++... ..|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4456777777777777776 56664 47777777777777777777777665
No 260
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=83.20 E-value=11 Score=28.46 Aligned_cols=78 Identities=13% Similarity=0.047 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+....||..+|-++-.. +.|..+++..-+.++-.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 45677777766665542 333333334557778889999988888888888888877653 56777777777766665
Q ss_pred cC
Q 006672 391 SG 392 (636)
Q Consensus 391 ~g 392 (636)
+|
T Consensus 98 sg 99 (116)
T 2p58_C 98 SQ 99 (116)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 261
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.27 E-value=7.6 Score=38.49 Aligned_cols=69 Identities=20% Similarity=0.277 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHhHcCCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHhH----hhcCCCCChhHH
Q 006672 366 TAMIWGLAIHGRYEQAIQYFKKMMYSGTEP-DGTVFLAILTACWYSGQVKLALNFFDSMR----FDYFIEPSVKHH 436 (636)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~~ 436 (636)
..++..+...|++++|+..++.+.. ..| +...+..++.++...|+..+|.+.|+... ++.|+.|++.+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 4456667778888888888888776 444 45678888888888888888888887754 346888887643
No 262
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.03 E-value=20 Score=29.38 Aligned_cols=76 Identities=7% Similarity=-0.054 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhcCc---HHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC
Q 006672 394 EPDGTVFLAILTACWYSGQ---VKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH 470 (636)
Q Consensus 394 ~p~~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~ 470 (636)
.|+..+--.+..++.++.. ..+++.+++.+.+. +..-.-+..-.|.-++.|.|++++|.++.+ .+++++|.|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d----~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVD----TLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHH----HHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHH----HHHhcCCCc
Confidence 5666666666667777664 56788899888752 211123444556678999999999999887 556889987
Q ss_pred chhH
Q 006672 471 PSSY 474 (636)
Q Consensus 471 ~~~~ 474 (636)
..+-
T Consensus 111 ~QA~ 114 (144)
T 1y8m_A 111 KQVG 114 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 263
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=81.77 E-value=11 Score=28.54 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=54.2
Q ss_pred CcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCChhcHHHHHHHHHHcCChHHHHHHHHHHhH
Q 006672 311 ALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKDLLTWTAMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 311 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
..++|..|-+.+...+. ...+--.-+..+.+.|++++|..+.+....||..+|-++-. .+.|..+++..-+.++-.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777776665542 33333333455778899999999888888888888887755 367777777777767666
Q ss_pred cC
Q 006672 391 SG 392 (636)
Q Consensus 391 ~g 392 (636)
+|
T Consensus 97 sg 98 (115)
T 2uwj_G 97 SS 98 (115)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 264
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=81.60 E-value=38 Score=32.38 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHH----HHhHHCCCCCCcccHHHHHHHHH
Q 006672 65 ITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHF----VFMLRLSVRPNRLTYPFVSKSVA 140 (636)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~~ 140 (636)
.+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +...+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455666677778888888887542 123345556665555444 33445667777776666666665
Q ss_pred ccCChH-HHHHHHHHHH----HhC--CCCChhHHHHHHHHHHhcCChHHHHHHH
Q 006672 141 SLSLLS-LGRGLHCLIV----KSG--VEYDAFVRVHLADMYVQLGKTRGAFKVF 187 (636)
Q Consensus 141 ~~~~~~-~a~~~~~~~~----~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~ 187 (636)
....-+ .-..+...++ +.| ..-|+.....+...|.+.+++.+|+.-|
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 443211 1122222222 222 2344555566666666666666666665
No 265
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.52 E-value=30 Score=29.95 Aligned_cols=19 Identities=42% Similarity=0.487 Sum_probs=8.4
Q ss_pred CChhHHHHHHHHHHhcCCh
Q 006672 162 YDAFVRVHLADMYVQLGKT 180 (636)
Q Consensus 162 ~~~~~~~~li~~~~~~g~~ 180 (636)
++..+....+.++.+.|..
T Consensus 57 ~~~~vr~~a~~~L~~~~~~ 75 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDE 75 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHhhCCH
Confidence 3444444444444444443
No 266
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=79.33 E-value=8.5 Score=29.26 Aligned_cols=61 Identities=3% Similarity=-0.060 Sum_probs=42.7
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 172 (636)
-+..+-++.+....+.|+.....+.|++|.+.+++..|.++++-+...- .....+|..+++
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 3555666666667778888888888888888888888888888776542 333445655543
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=79.22 E-value=23 Score=28.52 Aligned_cols=69 Identities=7% Similarity=-0.037 Sum_probs=52.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCch---HHHHHHHHHHHHHhccCCC-CchhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 428 FIEPSVKHHTVVVNLLSRVGQDS---QGYQNSQNSFTKLLQLKPK-HPSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 428 ~~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~l~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
+-.|++.+--.+..++.+....+ +++.+++... +.+|. ....+..|+-++.+.|++++|.+..+.+.+.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~----~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIY----KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH----HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH----hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 44677888788888898887764 4566665444 44563 3567788999999999999999999999873
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.21 E-value=12 Score=30.15 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred ChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHH
Q 006672 377 RYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVN 441 (636)
Q Consensus 377 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~ 441 (636)
+.-+..+-++.+....+-|++......+.||.+.+++..|.++|+.++.+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666677777778899999999999999999999999999998875443 44556666654
No 269
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.90 E-value=91 Score=34.57 Aligned_cols=213 Identities=15% Similarity=0.055 Sum_probs=111.9
Q ss_pred HHHhcCCHHHHHHHHhhCCC----CC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--C-----CCHHHHHHHHHH
Q 006672 239 GFMRKGDLKKAGELFEQMPE----KG--VVSWTAMINGFSQNGEAEKALAMFFQMLDAGV--R-----ANDFTVVSALSA 305 (636)
Q Consensus 239 ~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~-----p~~~t~~~ll~~ 305 (636)
+....|+.++++.+++.... .+ +..-..+.-+....|..+++.+++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34566778888888887664 12 22333444556666766678887777664321 0 111111122222
Q ss_pred HHhcCC-cHHHHHHHHHHHHcCCCCch--hHHHHHhhHHhhcCCHHHHHHHHhhccC-CChhc--HHHHHHHHHHcCChH
Q 006672 306 CAKVGA-LEAGVRVHNYISCNDFGLKG--AIGTALVDMYAKCGNIEAASLVFGETKE-KDLLT--WTAMIWGLAIHGRYE 379 (636)
Q Consensus 306 ~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~--~~~li~~~~~~g~~~ 379 (636)
.+..|. -+++.+.+..++...- ... ...-+|.-.|.-.|+-+....++..+.+ .+... .-++.-++...|+.+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGG
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChH
Confidence 222332 2445555555543221 111 1223444455667777777777766543 22222 223333444678888
Q ss_pred HHHHHHHHHhHcCCCCCH-HHHH---HHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHH
Q 006672 380 QAIQYFKKMMYSGTEPDG-TVFL---AILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQN 455 (636)
Q Consensus 380 ~A~~~~~~m~~~g~~p~~-~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 455 (636)
.+..+.+.+... .++ .-|. .+.-+|+..|+.....+++..+..+ ...++.....+.-++.-.|+.+.+.++
T Consensus 542 ~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 542 LADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 888888887762 232 2333 3345777888988887788888752 223333333333344446666555554
Q ss_pred HH
Q 006672 456 SQ 457 (636)
Q Consensus 456 ~~ 457 (636)
++
T Consensus 617 v~ 618 (963)
T 4ady_A 617 VQ 618 (963)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.30 E-value=23 Score=30.98 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCccCCeeeEEEEC
Q 006672 435 HHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKKDPGWSYIEVN 514 (636)
Q Consensus 435 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~s~i~~~ 514 (636)
.|-.+++.+ .++...++.++|..+..+ .+.-.-+..|...+..+...|++++|.++++.-.+++-.|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P---------- 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNK--GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP---------- 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHH--TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS----------
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----------
Confidence 344444433 234466888888888777 4455677888899999999999999999998888877654
Q ss_pred CEEEEecCCCcccHHHHHHHHHHHHHHHHHcCCc
Q 006672 515 GHVHRFEAGGHKLAKEIHSKLEDIMAGAREQGYM 548 (636)
Q Consensus 515 ~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 548 (636)
.+.+-+.......+|.+.+.+
T Consensus 149 -------------~~rL~~~~~~F~~R~~~~~~~ 169 (202)
T 3esl_A 149 -------------YNRLLRSLSNYEDRLREMNIV 169 (202)
T ss_dssp -------------HHHHHHHHHHHHHHHHHTTCC
T ss_pred -------------HHHHHHHHHHHHHHHHhcCCC
Confidence 234444555666777777663
No 271
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=75.52 E-value=50 Score=30.38 Aligned_cols=50 Identities=12% Similarity=-0.029 Sum_probs=20.5
Q ss_pred CCChHHHHHHHHHHHhcC--CHHHHHHHHhhCCCCChhhHHHHHHHHHhCCC
Q 006672 227 KKNVASWVSLIDGFMRKG--DLKKAGELFEQMPEKGVVSWTAMINGFSQNGE 276 (636)
Q Consensus 227 ~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 276 (636)
.++..+-...+.++.+.| ..+....+.+.+.+++...-...+.++.+.|+
T Consensus 170 d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 170 DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444433 22222233333334444444444455555554
No 272
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.03 E-value=42 Score=29.26 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=58.0
Q ss_pred hHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 111 QSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLADMYVQLGKTRGAFKVFDET 190 (636)
Q Consensus 111 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 190 (636)
.+++..+..+.. .||...-...+..+...+..+....+.+ +++ .+|..+....+.++.+.|+.+....+.+.+
T Consensus 18 ~~~~~~L~~~L~---~~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 90 (211)
T 3ltm_A 18 PEKVEMYIKNLQ---DDSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAVEPLIKAL 90 (211)
T ss_dssp GGGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGHHHHHHHT
T ss_pred HhHHHHHHHHHc---CCCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence 444544444443 2455555555666666665333333322 222 345566666666666666543333333333
Q ss_pred CCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 006672 191 PEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKKNVASWVSLIDGFMRKGD 245 (636)
Q Consensus 191 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 245 (636)
. .++...-...+.++.+.|+.+....+...+..++..+-...+.++.+.|+
T Consensus 91 ~----~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 91 K----DEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp T----CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred c----CCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 3 34444444555555555544333333333334444444444444444443
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=70.20 E-value=1.4e+02 Score=33.16 Aligned_cols=151 Identities=13% Similarity=0.095 Sum_probs=69.0
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCcHHHHHHHHHHHHcCCCCchhHHH--HHhhHHhhc
Q 006672 269 NGFSQNGEAEKALAMFFQMLDAGVRANDFTVVSALSA--CAKVGALEAGVRVHNYISCNDFGLKGAIGT--ALVDMYAKC 344 (636)
Q Consensus 269 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~ 344 (636)
..|.-.|+.+-...++..+.+.. +......+.-+ +...|+.+.+..+.+.+.... .|...... ++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCC
Confidence 33445566666666666555431 22222222222 335566666666666665432 22222222 334456667
Q ss_pred CCHHHHHHHHhhccC-CC--hhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCcH-HHHHHHH
Q 006672 345 GNIEAASLVFGETKE-KD--LLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQV-KLALNFF 420 (636)
Q Consensus 345 g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~-~~a~~~~ 420 (636)
|+.....+++..+.+ ++ +...-.+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++...+
T Consensus 574 Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L 652 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVL 652 (963)
T ss_dssp CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 776666666666553 22 2222222223333555555566665554432 23222111222222223322 4566666
Q ss_pred HHhH
Q 006672 421 DSMR 424 (636)
Q Consensus 421 ~~m~ 424 (636)
..+.
T Consensus 653 ~~L~ 656 (963)
T 4ady_A 653 DPLT 656 (963)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6665
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=68.49 E-value=20 Score=28.95 Aligned_cols=60 Identities=3% Similarity=-0.046 Sum_probs=45.2
Q ss_pred HHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006672 112 SCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAFVRVHLAD 172 (636)
Q Consensus 112 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 172 (636)
+..+-++.+...++.|+.......|++|.+.+|+..|..+++-++..- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 455566666777788999999999999999999999999998877552 344556665554
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.38 E-value=1.2e+02 Score=30.22 Aligned_cols=96 Identities=9% Similarity=-0.026 Sum_probs=56.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHc---CCCCchh--HHH
Q 006672 263 SWTAMINGFSQNGEAEKALAMFFQMLDAG--VRANDFTVVSALSACAKVGALEAGVRVHNYISCN---DFGLKGA--IGT 335 (636)
Q Consensus 263 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~--~~~ 335 (636)
++..+...|.+.|++++|.+.|.++.... ..--...+..+++.+...+++..+......+... +..++.. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45567777777777777777777776532 2223345666677777777777777777766532 2122211 111
Q ss_pred HHhhHHhhcCCHHHHHHHHhhcc
Q 006672 336 ALVDMYAKCGNIEAASLVFGETK 358 (636)
Q Consensus 336 ~li~~~~~~g~~~~A~~~~~~~~ 358 (636)
.-+-.+...+++..|...|-++.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHh
Confidence 12223445678888877776543
No 276
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=61.47 E-value=1.1e+02 Score=29.07 Aligned_cols=144 Identities=12% Similarity=0.044 Sum_probs=86.2
Q ss_pred HHHhcCCh---HHHHHHHhhCCCCChHHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 006672 208 GCSKIGYL---RKAVELFGMMPKKNVASWVSLIDGFMRKGDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKALAMF 284 (636)
Q Consensus 208 ~~~~~g~~---~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 284 (636)
.....|++ =+|.+. |.++..=|.+.+++++|.+++-. -...+.+.|+..-|-++-
T Consensus 21 ~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 21 RRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp HHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 34456676 555554 44566777888888888877533 123455566665554444
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHHhcCCcH-HHHHHHHHHH----HcC--CCCchhHHHHHhhHHhhcCCHHHHHHH
Q 006672 285 ----FQMLDAGVRANDFTVVSALSACAKVGALE-AGVRVHNYIS----CND--FGLKGAIGTALVDMYAKCGNIEAASLV 353 (636)
Q Consensus 285 ----~~m~~~g~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 353 (636)
+-..+.++++|..+...++..+.....-+ .=..+...++ +.| ..-|+.....+...|.+.+++.+|+.-
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44445677888877777777776554322 1123333333 223 234677888899999999999999988
Q ss_pred HhhccCCChhcHHHHHHHHH
Q 006672 354 FGETKEKDLLTWTAMIWGLA 373 (636)
Q Consensus 354 ~~~~~~~~~~~~~~li~~~~ 373 (636)
|-.-..+.+..+..|+.-+.
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHH
Confidence 85322222345544444333
No 277
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.93 E-value=57 Score=26.12 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHH
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRANDF 297 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 297 (636)
...++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4456677777788888888888776553 2334444555555432 356677777777776554443
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.63 E-value=40 Score=33.77 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=25.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHh
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD--GTVFLAILTACWYSGQVKLALNFFDSM 423 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m 423 (636)
+..+..-|.+.|++++|.+.|.++...-..+. ...+..++..+...+++..+....+++
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33444444444444444444444443222222 123334444444444444444444444
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=60.49 E-value=72 Score=26.79 Aligned_cols=53 Identities=6% Similarity=0.061 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
+++.++|..+..+ .+.-.-+..|...+..+...|++.+|.++++.-.+++-.|
T Consensus 77 ~~p~~if~~L~~~--~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 77 NEPLDMYSYLHNQ--GIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp SCHHHHHHHHHHT--TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHC--CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4577788877766 4455677889999999999999999999999888877655
No 280
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=59.40 E-value=1.2e+02 Score=30.04 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=35.9
Q ss_pred HhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH---HHHHHHHHHHhcCcHH
Q 006672 341 YAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILTACWYSGQVK 414 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~ 414 (636)
.++.|+.+-+..+++.-.. .+..-++.|..+ +..|+.+- .+.+.+.|..++.. -.+.+-.| ...|..+
T Consensus 285 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A-~~~g~~~~----v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~~ 358 (437)
T 1n11_A 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA-SHYGNIKL----VKFLLQHQADVNAKTKLGYSPLHQA-AQQGHTD 358 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH-HHSSCSHH----HHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCHH
T ss_pred HHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHH-HHcCcHHH----HHHHHhcCCCCCCCCCCCCCHHHHH-HHCChHH
Confidence 3445666655555554322 222233344333 34566543 33344445554422 12223223 3456655
Q ss_pred HHHHHHHHhHhhcCCCCCh
Q 006672 415 LALNFFDSMRFDYFIEPSV 433 (636)
Q Consensus 415 ~a~~~~~~m~~~~~~~p~~ 433 (636)
-+.-+++ .|..|+.
T Consensus 359 iv~~Ll~-----~ga~~~~ 372 (437)
T 1n11_A 359 IVTLLLK-----NGASPNE 372 (437)
T ss_dssp HHHHHHH-----TTCCSCC
T ss_pred HHHHHHH-----CcCCCCC
Confidence 4444332 4555553
No 281
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.45 E-value=60 Score=26.86 Aligned_cols=53 Identities=11% Similarity=0.064 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 450 SQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 450 ~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
+++.++|..+..+ .+.-.-+..|...+..+...|++++|.++++.-.+++-.|
T Consensus 82 ~dp~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNH--GIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTT--TTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4477777766655 3344566777788888888888888888888777766554
No 282
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=56.81 E-value=1e+02 Score=27.13 Aligned_cols=19 Identities=5% Similarity=0.041 Sum_probs=9.9
Q ss_pred HHHhcCChHHHHHHHhhCC
Q 006672 173 MYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 173 ~~~~~g~~~~A~~~~~~m~ 191 (636)
..+..|+.+-+..+++...
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAA 103 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHcCC
Confidence 3445566655555555443
No 283
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=56.45 E-value=22 Score=32.67 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=42.4
Q ss_pred HHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCC
Q 006672 405 TACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPK 469 (636)
Q Consensus 405 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~ 469 (636)
....+.|.+++++.....-++ .-+-|...-..++.+|+-.|+++.|.+-++... +++|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a----~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI----KLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH----HHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HhCch
Confidence 345677888888887777664 234567778888888888888888888777444 45664
No 284
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=54.41 E-value=73 Score=30.79 Aligned_cols=71 Identities=13% Similarity=0.184 Sum_probs=47.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRANDFTVVSAL 303 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll 303 (636)
.+.++.=|...|+.++|.+.++++..+. .+....+..++-+.++ .+....++..+...|+-+.......+.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~ 295 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE 295 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 4677788888889999999988887664 2344455555555433 356778888888877665554443333
No 285
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=54.41 E-value=91 Score=28.23 Aligned_cols=23 Identities=13% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHHHhhcCCChHHHHHHhccCC
Q 006672 68 QLISSASLHKSIDYALSIFDHFT 90 (636)
Q Consensus 68 ~li~~~~~~g~~~~A~~~f~~~~ 90 (636)
..+...++.|+++....+++.-.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~ 29 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGA 29 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCC
Confidence 44555566677777766666543
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.00 E-value=65 Score=28.34 Aligned_cols=48 Identities=8% Similarity=-0.110 Sum_probs=20.8
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCh---hhHHHHHHHHHhCCChHHHHHHHHH
Q 006672 238 DGFMRKGDLKKAGELFEQMPEKGV---VSWTAMINGFSQNGEAEKALAMFFQ 286 (636)
Q Consensus 238 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~ 286 (636)
...+..|+.+-+..+++.-...+. .-++ -+....+.|+.+-+.-+++.
T Consensus 182 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 182 HWAVLAGNTTVISLLLEAGANVDAQNIKGES-ALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCBCTTSCB-HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCcHHHHHHHHHh
Confidence 334455566555555554332221 1111 23334455665554444443
No 287
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.39 E-value=61 Score=26.86 Aligned_cols=65 Identities=14% Similarity=0.246 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHH
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRANDF 297 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ 297 (636)
...++.-|...|+.++|...++++..|. .++...+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 3456666777777777777777776553 2334444445554322 345667777777666544433
No 288
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=51.12 E-value=1.4e+02 Score=26.95 Aligned_cols=83 Identities=10% Similarity=-0.061 Sum_probs=38.9
Q ss_pred HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---cHHHHHHHHHccCChHHHHHHHHHHHHhCCCCChh--HHHHHHHH
Q 006672 99 VLIRGLAENSHFQSCISHFVFMLRLSVRPNRL---TYPFVSKSVASLSLLSLGRGLHCLIVKSGVEYDAF--VRVHLADM 173 (636)
Q Consensus 99 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~ 173 (636)
+.+...++.|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+ +.+.+++.|..++.. ...+.+..
T Consensus 7 ~~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 7 HLLIKAVQNEDVD----LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred hHHHHHHHcCCHH----HHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHH
Confidence 3444556667654 334444555544432 1112344444555554 444455556554432 11223344
Q ss_pred HHhcCChHHHHHHHhh
Q 006672 174 YVQLGKTRGAFKVFDE 189 (636)
Q Consensus 174 ~~~~g~~~~A~~~~~~ 189 (636)
.+..|+.+-+..+++.
T Consensus 79 A~~~~~~~~v~~Ll~~ 94 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSK 94 (285)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHc
Confidence 4556666655555543
No 289
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=46.02 E-value=1.7e+02 Score=26.52 Aligned_cols=11 Identities=27% Similarity=0.347 Sum_probs=4.4
Q ss_pred HHHHHHHHHcC
Q 006672 366 TAMIWGLAIHG 376 (636)
Q Consensus 366 ~~li~~~~~~g 376 (636)
...+.++.+.|
T Consensus 210 ~~A~~aL~~~~ 220 (280)
T 1oyz_A 210 IEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhC
Confidence 33333444444
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=44.70 E-value=1e+02 Score=27.34 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHhCCCcc
Q 006672 449 DSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQRRSIKK 504 (636)
Q Consensus 449 ~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 504 (636)
.+++.++|..+..+ .+.-.-+..|...+..+...|++++|.++|+.-.+++-.|
T Consensus 130 ~~~p~~if~~L~~~--~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHH--HIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHT--TCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHC--CcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35677777777666 3445567788888888888888888888888877766554
No 291
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=44.40 E-value=1.6e+02 Score=25.64 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=39.5
Q ss_pred cHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCC
Q 006672 364 TWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPS 432 (636)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 432 (636)
.|-..+..+ ..+...++..+|..|...|+--. ..-|......+...|++.+|.++|+.-++ .+-+|-
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P~ 149 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRPY 149 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBSH
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCccH
Confidence 344444433 13335577777777777666655 33555555666667777777777776664 445553
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.87 E-value=44 Score=30.98 Aligned_cols=176 Identities=13% Similarity=0.030 Sum_probs=74.6
Q ss_pred HhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---cHHHHHHHHHccCChHHH
Q 006672 72 SASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRL---TYPFVSKSVASLSLLSLG 148 (636)
Q Consensus 72 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a 148 (636)
..+..|+.+-+..+++.-..++...-.+.+...+..|+.+- ++.+.+.|..|+.. -.+ .+...+..|+.+-+
T Consensus 37 ~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~ga~~~~~d~~g~t-~L~~A~~~g~~~~v 111 (285)
T 3kea_A 37 YAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKI----VKILLFSGLDDSQFDDKGNT-ALYYAVDSGNMQTV 111 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHH----HHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHHCCCCCCCcCCCCCc-HHHHHHHcCCHHHH
Confidence 34445666666655554322211111122333344455432 23333445444322 122 22333344554433
Q ss_pred HHHHHHHHHhCCCCChhH---HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhC
Q 006672 149 RGLHCLIVKSGVEYDAFV---RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMM 225 (636)
Q Consensus 149 ~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 225 (636)
+.+++.|..++... +.+.+...+..|+.+-+..+++.-... .+...-.+.+...+..|+.+-+.-+++.-
T Consensus 112 ----~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 184 (285)
T 3kea_A 112 ----KLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYM 184 (285)
T ss_dssp ----HHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----HHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHcC
Confidence 33334454333221 123444455667766666555543211 12212233444455666666555555432
Q ss_pred CC---CChHHHHHHHHHHHhcCCHHHHHHHHhhCCCC
Q 006672 226 PK---KNVASWVSLIDGFMRKGDLKKAGELFEQMPEK 259 (636)
Q Consensus 226 ~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 259 (636)
.. .|..-++..+...++.|+.+-+.-+++.-...
T Consensus 185 ad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~ 221 (285)
T 3kea_A 185 TSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINI 221 (285)
T ss_dssp HHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCS
T ss_pred CCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 21 12112222234445567766666655543333
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=43.57 E-value=1.6e+02 Score=25.53 Aligned_cols=20 Identities=5% Similarity=-0.139 Sum_probs=10.9
Q ss_pred HHHHHhcCCcHHHHHHHHHH
Q 006672 303 LSACAKVGALEAGVRVHNYI 322 (636)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~ 322 (636)
+......|+.+-+..+++.-
T Consensus 214 l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 214 LDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHhh
Confidence 44445566666655555443
No 294
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=42.20 E-value=8 Score=23.39 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.7
Q ss_pred ccc-ccccccCCCC
Q 006672 623 HYF-KDGTCSCRDY 635 (636)
Q Consensus 623 h~~-~~g~csc~~~ 635 (636)
|.. .+|.|||+-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 443 6899999876
No 295
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=40.64 E-value=2.2e+02 Score=26.14 Aligned_cols=108 Identities=7% Similarity=0.023 Sum_probs=54.4
Q ss_pred HhcCCcHHHHHHHHHHHHcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccCCC------hhcHHHHHHHHHHcCChHH
Q 006672 307 AKVGALEAGVRVHNYISCNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKEKD------LLTWTAMIWGLAIHGRYEQ 380 (636)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~ 380 (636)
.+.|+++++++....-++.. |.|...-..|+..+|-.|+++.|.+-++...+-+ ...|..+|.+
T Consensus 8 l~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a--------- 77 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA--------- 77 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH---------
T ss_pred HhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH---------
Confidence 44555666665555555444 5566666666666666666666666555544311 1233333332
Q ss_pred HHHHHHHHhHcCCCCC-----HHHHHHHHHHH--HhcCcHHHHHHHHHHhHh
Q 006672 381 AIQYFKKMMYSGTEPD-----GTVFLAILTAC--WYSGQVKLALNFFDSMRF 425 (636)
Q Consensus 381 A~~~~~~m~~~g~~p~-----~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~ 425 (636)
+..=.+...-+-.|. ..-...++.+. ...|+.++|..+-..+.+
T Consensus 78 -E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp -HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 222222332222221 22233344443 346888888887777754
No 296
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.38 E-value=2.7e+02 Score=27.20 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=34.9
Q ss_pred HhhcCCHHHHHHHHhhccCC---ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHH---HHHHHHHHHHhcCcHH
Q 006672 341 YAKCGNIEAASLVFGETKEK---DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGT---VFLAILTACWYSGQVK 414 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~ 414 (636)
.+..|+.+-+..+++.-... +...++.+..+ +..|+.+-+ +.+.+.|..++.. -.+.|. ..+..|+.+
T Consensus 252 A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A-~~~~~~~~~----~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~ 325 (437)
T 1n11_A 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLV-AQEGHVPVA----DVLIKHGVMVDATTRMGYTPLH-VASHYGNIK 325 (437)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHH-HHHTCHHHH----HHHHHHTCCTTCCCSSCCCHHH-HHHHSSCSH
T ss_pred HHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHcCCHHHH----HHHHhCCccCCCCCCCCCCHHH-HHHHcCcHH
Confidence 34566666666666543332 22333444433 355665543 3344445444321 222333 334567766
Q ss_pred HHHHHHH
Q 006672 415 LALNFFD 421 (636)
Q Consensus 415 ~a~~~~~ 421 (636)
-+.-+++
T Consensus 326 ~v~~Ll~ 332 (437)
T 1n11_A 326 LVKFLLQ 332 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555543
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=39.70 E-value=1.2e+02 Score=27.34 Aligned_cols=31 Identities=10% Similarity=0.043 Sum_probs=20.5
Q ss_pred CCChhHHHHHHHHHHhcCCchHHHHHHHHHH
Q 006672 430 EPSVKHHTVVVNLLSRVGQDSQGYQNSQNSF 460 (636)
Q Consensus 430 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 460 (636)
.+++..-...+..+.|.|+-++|.++|=++.
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3445555566677778888888887776443
No 298
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=38.54 E-value=1.4e+02 Score=25.91 Aligned_cols=61 Identities=13% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHH---hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHcCC
Q 006672 266 AMINGFS---QNGEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-----LEAGVRVHNYISCNDF 327 (636)
Q Consensus 266 ~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 327 (636)
.+|+++. +..+++.|+-++.+|++.| .|....-..++.+...-|. +..|...++.....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 3555554 5689999999999999999 7777666667767666553 2233344444444553
No 299
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=38.40 E-value=1.7e+02 Score=24.17 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=29.9
Q ss_pred HHHHHhhccCC-----ChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 350 ASLVFGETKEK-----DLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 350 A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
+..+|..|... -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 55555555443 233566666666677777777777777777766664
No 300
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.77 E-value=85 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.306 Sum_probs=29.8
Q ss_pred cCCchHHHHHHHHHHH---HHhccCCCCchhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006672 446 VGQDSQGYQNSQNSFT---KLLQLKPKHPSSYVLLSNIYAAEGRWKDVARVRTLMQR 499 (636)
Q Consensus 446 ~g~~~~A~~~~~~~~~---~~~~l~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 499 (636)
.|+.+.|+++|++... +++.+...-+. .....|++|.++.++|++
T Consensus 35 ~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 35 LGQKEEAKNYYKQGIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 4888899999885543 44555432111 223468999999999986
No 301
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=37.03 E-value=12 Score=22.88 Aligned_cols=11 Identities=18% Similarity=0.712 Sum_probs=9.3
Q ss_pred ccccccchhhH
Q 006672 593 KLTICGDCHSL 603 (636)
Q Consensus 593 nl~~~~~~h~~ 603 (636)
+.|+|.+|+.-
T Consensus 16 ~YRvC~~CgkP 26 (44)
T 2lo3_A 16 QYRVCEKCGKP 26 (44)
T ss_dssp CEEECTTTCCE
T ss_pred cchhhcccCCc
Confidence 78999999853
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=36.54 E-value=1.1e+02 Score=24.35 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=36.3
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccCCC---hhcHHHHHHHHHHcCC--hHHHHHHHHHHhHcCCCC
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHGR--YEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 395 (636)
..++.-|...|+.++|.+.++++..|. ......+..++-+.+. .+.+..++..+...|+-+
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456777777788888888888876542 2233344444444332 345666777776655443
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=35.66 E-value=2e+02 Score=32.22 Aligned_cols=57 Identities=9% Similarity=-0.109 Sum_probs=32.5
Q ss_pred HHHHHHhcCcHHHHHHHHHHhHhhcCCCCC-----------------------hhHHHHHHHHHHhcCCchHHHHHHHHH
Q 006672 403 ILTACWYSGQVKLALNFFDSMRFDYFIEPS-----------------------VKHHTVVVNLLSRVGQDSQGYQNSQNS 459 (636)
Q Consensus 403 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 459 (636)
+..+|...|++++|.++|+++- .|+.++ ..-|..++..+-+.+.++-+.++.+.+
T Consensus 846 ~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 846 KALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455666677777777766553 233211 124566666666666666666666655
Q ss_pred HH
Q 006672 460 FT 461 (636)
Q Consensus 460 ~~ 461 (636)
.+
T Consensus 924 I~ 925 (950)
T 4gq2_M 924 DA 925 (950)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 304
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.99 E-value=1.8e+02 Score=26.65 Aligned_cols=169 Identities=12% Similarity=0.067 Sum_probs=91.0
Q ss_pred CChHHHHHHhccC--CCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCChHHHHHHHHH
Q 006672 77 KSIDYALSIFDHF--TPKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLLSLGRGLHCL 154 (636)
Q Consensus 77 g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 154 (636)
.+..+..+++..- ..+|..-++.|. ..+..|+.+-+ +.+.+.|..++...-.+.+...+..|+.+-.+ .
T Consensus 10 ~~~~~v~~lL~~~~~~~~d~~g~t~L~-~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~ 80 (285)
T 3kea_A 10 WKSKQLKSFLSSKDTFKADVHGHSASY-YAIADNNVRLV----CTLLNAGALKNLLENEFPLHQAATLEDTKIVK----I 80 (285)
T ss_dssp CCHHHHHHHHHSTTTTCCCTTSCCHHH-HHHHTTCHHHH----HHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----H
T ss_pred cCHHHHHHHHHhCCCCccCCCCCCHHH-HHHHcCCHHHH----HHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----H
Confidence 3444445544322 233333344443 34456666544 44445565544332233455556677766444 4
Q ss_pred HHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHHHHHHHHHhcCChHHHHHHHhhCCCC-ChH
Q 006672 155 IVKSGVEYDAFV--RVHLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWNVLINGCSKIGYLRKAVELFGMMPKK-NVA 231 (636)
Q Consensus 155 ~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~ 231 (636)
+++.|..++... ..+.+...+..|+.+-+..+++.-..-. ..+..-|.+.+...+..|+.+-+.-+++.-... +..
T Consensus 81 Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 159 (285)
T 3kea_A 81 LLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159 (285)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCS
T ss_pred HHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc
Confidence 455676554321 1223445567888888877776632111 223333345566667788887777777665433 221
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhh
Q 006672 232 SWVSLIDGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 232 ~~~~li~~~~~~g~~~~A~~~~~~ 255 (636)
...+.+...+..|+.+-+..+++.
T Consensus 160 ~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 160 ILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCccHHHHHHHcChHHHHHHHHHc
Confidence 344555666788888888777765
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=34.34 E-value=2.3e+02 Score=24.61 Aligned_cols=48 Identities=2% Similarity=-0.135 Sum_probs=23.4
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhH--HHHHHHHhhcCCChHHHHHHhcc
Q 006672 41 SNSTKQLRQIHAQIILHNLFASSRI--TTQLISSASLHKSIDYALSIFDH 88 (636)
Q Consensus 41 ~~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~ 88 (636)
.++.+..+.+.+.+.+.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 3456666666665555554333211 11233344455666666555553
No 306
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.24 E-value=1.8e+02 Score=24.43 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=25.2
Q ss_pred HhhcCCHHHHHHHHhhc-cC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcCCCCC
Q 006672 341 YAKCGNIEAASLVFGET-KE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPD 396 (636)
Q Consensus 341 ~~~~g~~~~A~~~~~~~-~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 396 (636)
.+..|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..|+
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 34456666655555543 11 2333344444433322222233455555555555554
No 307
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.75 E-value=1.6e+02 Score=26.32 Aligned_cols=24 Identities=13% Similarity=0.001 Sum_probs=17.6
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH
Q 006672 266 AMINGFSQNGEAEKALAMFFQMLD 289 (636)
Q Consensus 266 ~li~~~~~~g~~~~A~~l~~~m~~ 289 (636)
--++.+....++++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346677778888888888877654
No 308
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.72 E-value=1.3e+02 Score=26.03 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHcCCCCchhHHHHHh
Q 006672 267 MINGFSQN---GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-----LEAGVRVHNYISCNDFGLKGAIGTALV 338 (636)
Q Consensus 267 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~~~~~~~~li 338 (636)
+|+++.++ .+++.|+-++.+|++.|-.|....-..++.+.-..|. +..|...++.....|.|--.....-.+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred hHHhhcCCHHHHHHHHhhc
Q 006672 339 DMYAKCGNIEAASLVFGET 357 (636)
Q Consensus 339 ~~~~~~g~~~~A~~~~~~~ 357 (636)
..++.+-+-..+...++..
T Consensus 90 iyLA~aPKSNs~y~A~~~A 108 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTA 108 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHH
No 309
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=29.67 E-value=56 Score=24.60 Aligned_cols=38 Identities=11% Similarity=0.101 Sum_probs=30.9
Q ss_pred CChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHH
Q 006672 77 KSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCI 114 (636)
Q Consensus 77 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 114 (636)
...+.|+++++.++.+...+|..++.++...|+..-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46888999999999888899999999997767655443
No 310
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=29.05 E-value=2.7e+02 Score=26.35 Aligned_cols=20 Identities=10% Similarity=0.184 Sum_probs=11.1
Q ss_pred HHHHHHhcCChHHHHHHHhh
Q 006672 170 LADMYVQLGKTRGAFKVFDE 189 (636)
Q Consensus 170 li~~~~~~g~~~~A~~~~~~ 189 (636)
.+...+..|+.+-+..+++.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 33444556666666666654
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=28.74 E-value=1e+02 Score=25.48 Aligned_cols=61 Identities=21% Similarity=0.317 Sum_probs=35.4
Q ss_pred HHHhhHHhhcCCHHHHHHHHhhccCCC---hhcHHHHHHHHHHcCC--hHHHHHHHHHHhHcCCCC
Q 006672 335 TALVDMYAKCGNIEAASLVFGETKEKD---LLTWTAMIWGLAIHGR--YEQAIQYFKKMMYSGTEP 395 (636)
Q Consensus 335 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 395 (636)
..++.-|...|+.++|.+.++++..|. ......+..++-+.++ .+.+..++..+...|+-+
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 556777777788888888888776542 2233344444443222 344566666666655443
No 312
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.45 E-value=2e+02 Score=25.22 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----cHHHHHHHHHHHHcCCCC
Q 006672 258 EKGVVSWTAMINGFSQN---GEAEKALAMFFQMLDAGVRANDFTVVSALSACAKVGA-----LEAGVRVHNYISCNDFGL 329 (636)
Q Consensus 258 ~~~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 329 (636)
+++-...-.+|+++.++ .+++.|+-++.+|++.|-.|....-..++.+.-.-|. +..|...++.....|.|-
T Consensus 29 Dk~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 108 (213)
T 3ctd_A 29 DKNGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPE 108 (213)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTT
T ss_pred CCCchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Q ss_pred chhHHHHHhhHHhhcCCHHHHHHHHhhc
Q 006672 330 KGAIGTALVDMYAKCGNIEAASLVFGET 357 (636)
Q Consensus 330 ~~~~~~~li~~~~~~g~~~~A~~~~~~~ 357 (636)
-.....-.+..++.+-+-..+ ..++..
T Consensus 109 ~~i~LaqaviyLA~APKSNs~-~A~~~A 135 (213)
T 3ctd_A 109 GLFFLSQASLYLAISPKSNST-KSIFKA 135 (213)
T ss_dssp THHHHHHHHHHHHHSCCCCGG-GHHHHH
T ss_pred HHHHHHHHHHHHHcCCccHHH-HHHHHH
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.55 E-value=2.2e+02 Score=28.98 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCC-------chhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006672 433 VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKH-------PSSYVLLSNIYAAEGRWKDVARVRTLMQRR 500 (636)
Q Consensus 433 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 500 (636)
...++.++..|...+.++.|..++.+.. -|.+ ...+.-++.++.-.++|.+|.+.+....++
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLE------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHC------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCc------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 5567888888999999999999988542 3432 234556788899999999999998888664
No 314
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.54 E-value=2.6e+02 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=12.9
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC
Q 006672 168 VHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
..++.-|...|+.++|...++++.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 445555555555555555555554
No 315
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.49 E-value=4e+02 Score=25.25 Aligned_cols=60 Identities=15% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCC
Q 006672 234 VSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNG-EAEKALAMFFQMLDAGVR 293 (636)
Q Consensus 234 ~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~ 293 (636)
..++.=|...|+.++|...++++..|. ......+..+.-+.. ..+.+..++..+.+.|+-
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~i 78 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHL 78 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCC
Confidence 345555666666666666666665543 112222222222211 123445566666655543
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=27.33 E-value=4.8e+02 Score=26.10 Aligned_cols=69 Identities=17% Similarity=0.127 Sum_probs=36.0
Q ss_pred HcCCCCchhHHHHHhhHHhhcCCHHHHHHHHhhccC---CChhcHHHHHHHHHHcCChHHHHHHHHHHhHcC
Q 006672 324 CNDFGLKGAIGTALVDMYAKCGNIEAASLVFGETKE---KDLLTWTAMIWGLAIHGRYEQAIQYFKKMMYSG 392 (636)
Q Consensus 324 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 392 (636)
+.|++--...|..-.+.+...|++++|.++-...+. ++..+.+.+-..=.+.|+..--+.+|..+.+.|
T Consensus 354 R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 354 RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS
T ss_pred hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC
Confidence 344444444555555566667777777776655544 333333333322223345555556666665554
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=26.53 E-value=82 Score=23.63 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=25.5
Q ss_pred CCHHHHHHHHhhCCCCChhhHHHHHHHHHhCCChHHH
Q 006672 244 GDLKKAGELFEQMPEKGVVSWTAMINGFSQNGEAEKA 280 (636)
Q Consensus 244 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 280 (636)
...+.|.++++.++.++..+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777666665544
No 318
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=26.50 E-value=2.5e+02 Score=22.58 Aligned_cols=112 Identities=11% Similarity=-0.008 Sum_probs=55.2
Q ss_pred HHHHhhcCCChHHHHHHhccCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccH--HHHHHHHHcc
Q 006672 69 LISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTY--PFVSKSVASL 142 (636)
Q Consensus 69 li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~ 142 (636)
.+...++.|+.+....+++.-. ..+..-++.|. ..+..|+. ++++.+.+.|..++.... .+.+...+..
T Consensus 11 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 85 (165)
T 3twr_A 11 QLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLH-FAAGYNRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHH-HHHHTTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHH-HHHHcChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc
Confidence 3344566788888888876433 12222233333 34455554 445555566665543322 1233333445
Q ss_pred CChHHHHHHHHHHHHhCCCCChhH--HHHHHHHHHhcCChHHHHHHHhh
Q 006672 143 SLLSLGRGLHCLIVKSGVEYDAFV--RVHLADMYVQLGKTRGAFKVFDE 189 (636)
Q Consensus 143 ~~~~~a~~~~~~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~ 189 (636)
|+.+ +.+.+++.|..++... ..+.+...+..|+.+-+..+++.
T Consensus 86 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 130 (165)
T 3twr_A 86 GHYE----VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130 (165)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 5554 3444555665544321 11233444566666666555543
No 319
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=26.20 E-value=13 Score=19.41 Aligned_cols=13 Identities=38% Similarity=1.242 Sum_probs=8.5
Q ss_pred ccccccc--cCCCCC
Q 006672 624 YFKDGTC--SCRDYW 636 (636)
Q Consensus 624 ~~~~g~c--sc~~~~ 636 (636)
.|.+|.| .|++-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 5777777 566555
No 320
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.73 E-value=2.2e+02 Score=26.71 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCCHHH
Q 006672 233 WVSLIDGFMRKGDLKKAGELFEQMPEKG---VVSWTAMINGFSQNGE--AEKALAMFFQMLDAGVRANDFT 298 (636)
Q Consensus 233 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t 298 (636)
...++.-|...|+.++|.+.++++..|. .+....+..+.-+.++ .+....++..+.+.|+-+....
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 4567778888899999999999887664 2344455555555433 4556788888887775554443
No 321
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=25.60 E-value=22 Score=24.63 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=16.8
Q ss_pred ceEEEec-CcccccccccccCC
Q 006672 613 REIVLRD-TRFHYFKDGTCSCR 633 (636)
Q Consensus 613 ~~~~~~d-~~~h~~~~g~csc~ 633 (636)
..|=+.| +..|+|+||+-+-.
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4566789 99999999986543
No 322
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=25.51 E-value=1.7e+02 Score=21.44 Aligned_cols=66 Identities=8% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHhhcCCChHHHHHHhccCCCCCcchHHHHHHHHHhCCCchHHHHH
Q 006672 47 LRQIHAQIILHNLFASSRITTQLISSASLHKSIDYALSIFDHFTPKNLHIFNVLIRGLAENSHFQSCISH 116 (636)
Q Consensus 47 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 116 (636)
...+.+.+... .+.+-.-.=..-+.....+.|.++++.++.+....+..++.++...+...-|..+
T Consensus 24 v~~lld~L~~~----~vlt~~~~e~I~~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La~~L 89 (94)
T 2p1h_A 24 TSYIMDHMISD----GFLTISEEEKVRNEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLAALL 89 (94)
T ss_dssp HHHHHHHHHHH----TSSCHHHHHHHHTSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHC----CCCCHHHHHHHHcCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHHHHH
No 323
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=25.16 E-value=29 Score=27.93 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCcEEEee----ccccccchhhHHHHhhhhcCceEEEec-Cccccccccccc
Q 006672 585 GTTIKIVK----KLTICGDCHSLMKYASKISQREIVLRD-TRFHYFKDGTCS 631 (636)
Q Consensus 585 ~~~~~i~~----nl~~~~~~h~~~k~~s~~~~~~~~~~d-~~~h~~~~g~cs 631 (636)
...+||+. ..++|.+| .++..-..-.+ ..||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 45567763 46777776 34444445568 899999999874
No 324
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.94 E-value=4.3e+02 Score=24.71 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcCc--HHHHHHHHHHhHh
Q 006672 365 WTAMIWGLAIHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSGQ--VKLALNFFDSMRF 425 (636)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~ 425 (636)
.+.++.-|...|+.++|.+.++++......| ......+..+.-+.++ .+...+++..+.+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~ 230 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWK 230 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Confidence 4567888888899999999888875311111 2233444445544332 3455566666663
No 325
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=23.97 E-value=2e+02 Score=29.26 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=35.4
Q ss_pred HhcCcHHHHHHHHHHhHhhcCCCCC-hhHHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHH
Q 006672 408 WYSGQVKLALNFFDSMRFDYFIEPS-VKHHTVVVNLLSRVGQDSQGYQNSQNSFTKLLQLKPKHPSSYVLLSNIYAA 483 (636)
Q Consensus 408 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~l~p~~~~~~~~l~~~~~~ 483 (636)
.....++.|..+|..... +.|+ -..|+.|+-+....|+.-+|.-.|-+.. ....+-+.+...|...+.+
T Consensus 163 RY~~~~~~A~~~Y~~A~~---~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl----~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 163 RYRNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI----AVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH----SSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---hCCCCCchHHHHHHHHhcccccHHHHHHHHHHH----hcCCCChhHHHHHHHHHHH
Confidence 334455666666666654 3333 4556666666665666555555544322 2222245555555555443
No 326
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.94 E-value=1.8e+02 Score=23.50 Aligned_cols=63 Identities=16% Similarity=0.057 Sum_probs=40.7
Q ss_pred HHHhHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCCChhHHHHHHHHHHhcCCch
Q 006672 386 KKMMYSGTEPDGTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEPSVKHHTVVVNLLSRVGQDS 450 (636)
Q Consensus 386 ~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l~~~~~~~g~~~ 450 (636)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+ .+...+..+----++.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCCEE
Confidence 346667887775422 334444455666678889988875 344455555555668888899874
No 327
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=23.31 E-value=3.6e+02 Score=23.17 Aligned_cols=176 Identities=11% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHhhcCCChHHHHHHhccCC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHH--HHHHHHH
Q 006672 67 TQLISSASLHKSIDYALSIFDHFT----PKNLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYP--FVSKSVA 140 (636)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~ 140 (636)
+..+...++.|+++....+++.-+ .++..-++.|..+..... .++++.+.+.|..++..... +.+...+
T Consensus 7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 81 (231)
T 3aji_A 7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH-----TEIVEFLLQLGVPVNDKDDAGWSPLHIAA 81 (231)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCc-----HHHHHHHHHhCCCCCCcCCCCCCHHHHHH
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhHHH--HHHHHHHhcCChHHHHHHHhhCCCCCCCCChhhHH--HHHHHHHhcCChH
Q 006672 141 SLSLLSLGRGLHCLIVKSGVEYDAFVRV--HLADMYVQLGKTRGAFKVFDETPEKNKSESVLLWN--VLINGCSKIGYLR 216 (636)
Q Consensus 141 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~ 216 (636)
..|+.+ +.+.+++.|..++..... +.+...+..|+.+-+..+++.-. .++..... +.+...+..|+.+
T Consensus 82 ~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----~~~~~~~~g~t~L~~A~~~~~~~ 153 (231)
T 3aji_A 82 SAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----NPDAKDHYDATAMHRAAAKGNLK 153 (231)
T ss_dssp HHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC----CTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcCCCCCcHHHHHHHcCCHH
Q ss_pred HHHHHHhhCCCCChHHHH--HHHHHHHhcCCHHHHHHHHhh
Q 006672 217 KAVELFGMMPKKNVASWV--SLIDGFMRKGDLKKAGELFEQ 255 (636)
Q Consensus 217 ~A~~~~~~m~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~ 255 (636)
-+.-+++.-..++..... +.+...++.|+.+-+.-+++.
T Consensus 154 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 154 MVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
No 328
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.00 E-value=3.9e+02 Score=27.22 Aligned_cols=59 Identities=14% Similarity=0.149 Sum_probs=31.0
Q ss_pred hHHHHHhhHHhhcCCHHHHHHHHhhccCCCh-hc------HH-HHHHHHHHcCChHHHHHHHHHHhH
Q 006672 332 AIGTALVDMYAKCGNIEAASLVFGETKEKDL-LT------WT-AMIWGLAIHGRYEQAIQYFKKMMY 390 (636)
Q Consensus 332 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~------~~-~li~~~~~~g~~~~A~~~~~~m~~ 390 (636)
.++|.++..|...+.++.|..+..+..-|.. .+ |. .+...+.-.+++.+|.+.+.....
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455566666666666666666665544321 11 11 123334455666666666666554
No 329
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=22.94 E-value=75 Score=28.58 Aligned_cols=53 Identities=11% Similarity=-0.016 Sum_probs=27.7
Q ss_pred HHHhCCCchHHHHHHHHhHHCCCCCCccc-------HHHHHHHHH--ccCChHHHHHHHHHH
Q 006672 103 GLAENSHFQSCISHFVFMLRLSVRPNRLT-------YPFVSKSVA--SLSLLSLGRGLHCLI 155 (636)
Q Consensus 103 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~ 155 (636)
..++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34456677776667776666665555332 233333322 445555555555443
No 330
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=22.55 E-value=3.8e+02 Score=23.71 Aligned_cols=52 Identities=8% Similarity=0.096 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhHcCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHhHhhcCCCC
Q 006672 379 EQAIQYFKKMMYSGTEPD-GTVFLAILTACWYSGQVKLALNFFDSMRFDYFIEP 431 (636)
Q Consensus 379 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 431 (636)
+.+..+|..|...|+--. ..-|......+...|++.+|..+|+.-++ .+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~-~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR-MKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 455667777776666555 33455555556666777777777766663 44445
No 331
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=22.48 E-value=4.9e+02 Score=24.46 Aligned_cols=88 Identities=9% Similarity=-0.107 Sum_probs=38.7
Q ss_pred HHHHhhcCCChHHHHHHhccCCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHccCCh
Q 006672 69 LISSASLHKSIDYALSIFDHFTPK---NLHIFNVLIRGLAENSHFQSCISHFVFMLRLSVRPNRLTYPFVSKSVASLSLL 145 (636)
Q Consensus 69 li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 145 (636)
.+...+..|+.+.+..+++.-..+ |..-++.|.. .+..|+.+ +.+.+.+.|..++...-.+.+...+..|+.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~ 97 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL-ACKFGCVD----TAKYLASVGEVHSLWHGQKPIHLAVMANKT 97 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHHCCHH----HHHHHHHHCCCCCCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHH-HHHcCCHH----HHHHHHHCCCCccccCCCCHHHHHHHcCCH
Confidence 334445566666666666543222 2222333332 23344443 233333334333332222233344455666
Q ss_pred HHHHHHHHHHHHhCCC
Q 006672 146 SLGRGLHCLIVKSGVE 161 (636)
Q Consensus 146 ~~a~~~~~~~~~~g~~ 161 (636)
+-++.+++.....|..
T Consensus 98 ~~v~~Ll~~~~~~~~~ 113 (364)
T 3ljn_A 98 DLVVALVEGAKERGQM 113 (364)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccccCCC
Confidence 6666655554444443
No 332
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.80 E-value=3.9e+02 Score=23.13 Aligned_cols=45 Identities=11% Similarity=0.170 Sum_probs=31.9
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHhHcCCCCCHHHHHHHHHHHHhcC
Q 006672 366 TAMIWGLA---IHGRYEQAIQYFKKMMYSGTEPDGTVFLAILTACWYSG 411 (636)
Q Consensus 366 ~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 411 (636)
--+|+++- +..+.+.|+-.+-+|++.| .|..+.-..++.|....|
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 33455553 4688999999999999999 776555555556665555
No 333
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.96 E-value=5.8e+02 Score=24.75 Aligned_cols=18 Identities=11% Similarity=0.503 Sum_probs=9.0
Q ss_pred HHHHcCChHHHHHHHHHH
Q 006672 371 GLAIHGRYEQAIQYFKKM 388 (636)
Q Consensus 371 ~~~~~g~~~~A~~~~~~m 388 (636)
...+..+.++|++.++++
T Consensus 85 ~~~~~~d~~~al~~L~~~ 102 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDL 102 (393)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHhhcCCHHHHHHHHHHH
Confidence 334444555555555554
No 334
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=20.43 E-value=5.7e+02 Score=24.49 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhhCC
Q 006672 168 VHLADMYVQLGKTRGAFKVFDETP 191 (636)
Q Consensus 168 ~~li~~~~~~g~~~~A~~~~~~m~ 191 (636)
..+|.-|...|+.++|...++++.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhC
Confidence 445555555666666666666554
Done!