BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006673
(636 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FPM|A Chain A, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FPM|B Chain B, Monovalent Cation Binding Sites In
N10-formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|A Chain A, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|1FP7|B Chain B, Monovalent Cation Binding Sites In
N10-Formyltetrahydrofolate Synthetase From Moorella
Thermoacetica
pdb|3PZX|A Chain A, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3PZX|B Chain B, Native Crystal Structure Of N10-Formyltetrahydrofolate
Synthetase
pdb|3QB6|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3QB6|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Folate
pdb|3RBO|A Chain A, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3RBO|B Chain B, Crystal Structure Of N10-Formyltetrahydrofolate Synthetase
With Adp And Formylphosphate
pdb|3SIN|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3SIN|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Zd9331 And Formylphosphate
pdb|3QUS|A Chain A, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
pdb|3QUS|B Chain B, Crystal Strucutre Of N10-Formyltetrahydrofolate Synthetase
With Atpgs
Length = 557
Score = 378 bits (971), Expect = e-105, Method: Compositional matrix adjust.
Identities = 201/415 (48%), Positives = 258/415 (62%), Gaps = 16/415 (3%)
Query: 222 LDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLA 281
L+IDP +ITWRRV+D+NDR LR I IG G + G+ RETGFDISVASE+MA L L + L
Sbjct: 157 LNIDPRTITWRRVIDLNDRALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 282 DMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFA 341
D++ER ++V+G + G P+TA DL G++ +LMKDAI P L+QTLE TP +H GPFA
Sbjct: 217 DLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFA 276
Query: 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 401
NIAHG +SI+A K ALKL +VVTEAGFGAD+GAEKF ++KCRY+G P VIVAT
Sbjct: 277 NIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVAT 333
Query: 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA 461
+RALKMHGG P+ EN+ + G NL +HI N +G VVA+N F
Sbjct: 334 VRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFP 385
Query: 462 TDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521
TD++ V A GG+G ++L V + E+ LY LD
Sbjct: 386 TDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLD 442
Query: 522 VSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKG 580
+SIK+KI IA YGA GV Y+ EA+K I+ Y G+ LP+ MAKTQYSFS + + G
Sbjct: 443 LSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLG 502
Query: 581 APTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGL 635
P F + +R+VR S G I P+ G + TMPGLP RP ID+D A G + GL
Sbjct: 503 RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Query: 13 VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYV 72
+S VP+DI+IA + + + E+A+ L ++ + +LYGKYKAK+ L V L+ DG +
Sbjct: 1 MSKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLI 60
Query: 73 VVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQV 132
+V ITPTP GEGK+TT+VGL AL A L K+V+ CLR+PS GP+FGIK Y+QV
Sbjct: 61 LVTAITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQV 119
Query: 133 IPMDEFNLHLTGDIH 147
+PM++ NLH TGDIH
Sbjct: 120 VPMEDINLHFTGDIH 134
>pdb|1EG7|A Chain A, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
pdb|1EG7|B Chain B, The Crystal Structure Of Formyltetrahydrofolate Synthetase
From Moorella Thermoacetica
Length = 557
Score = 375 bits (963), Expect = e-104, Method: Compositional matrix adjust.
Identities = 200/415 (48%), Positives = 257/415 (61%), Gaps = 16/415 (3%)
Query: 222 LDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLA 281
L+IDP +ITWRRV+D+N+R LR I IG G + G+ RETGFDISVASE+MA L L + L
Sbjct: 157 LNIDPRTITWRRVIDLNERALRNIVIGLGGKANGVPRETGFDISVASEVMACLCLASDLM 216
Query: 282 DMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFA 341
D++ER + V+G + G P+TA DL G++ +LMKDAI P L+QTLE TP +H GPFA
Sbjct: 217 DLKERFSRKVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPAFIHGGPFA 276
Query: 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVAT 401
NIAHG +SI+A K ALKL +VVTEAGFGAD+GAEKF ++KCRY+G P VIVAT
Sbjct: 277 NIAHGCNSIIATKTALKL---ADYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVAT 333
Query: 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA 461
+RALKMHGG P+ EN+ + G NL +HI N +G VVA+N F
Sbjct: 334 VRALKMHGGVPK--------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFP 385
Query: 462 TDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521
TD++ V A GG+G ++L V + E+ LY LD
Sbjct: 386 TDTEAELNLLYELCAKAGAE---VALSWAKGGEGGLELARKVLQTLESRPSNFHVLYNLD 442
Query: 522 VSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKG 580
+SIK+KI IA YGA GV Y+ EA+K I+ Y G+ LP+ MAKTQYSFS + + G
Sbjct: 443 LSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSFSDDMTKLG 502
Query: 581 APTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGL 635
P F + +R+VR S G I P+ G + TMPGLP RP ID+D A G + GL
Sbjct: 503 RPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGL 556
Score = 138 bits (348), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/135 (50%), Positives = 94/135 (69%), Gaps = 1/135 (0%)
Query: 13 VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYV 72
+S VP+DI+IA + + + E+A+ L ++ + +LYGKYKAK+ L V L+ DG +
Sbjct: 1 MSKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLI 60
Query: 73 VVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQV 132
+V ITPTP GEGK+TT+VGL AL A L K+V+ CLR+PS GP+FGIK Y+QV
Sbjct: 61 LVTAITPTPAGEGKTTTSVGLTDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQV 119
Query: 133 IPMDEFNLHLTGDIH 147
+PM++ NLH TGDIH
Sbjct: 120 VPMEDINLHFTGDIH 134
>pdb|3DO6|A Chain A, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
pdb|3DO6|B Chain B, Crystal Structure Of Putative Formyltetrahydrofolate
Synthetase (Tm1766) From Thermotoga Maritima At 1.85 A
Resolution
Length = 543
Score = 298 bits (764), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 171/417 (41%), Positives = 241/417 (57%), Gaps = 16/417 (3%)
Query: 221 RLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSL 280
L ID + W+R D NDR LR I IG G G RE F I+ ASE+ A+LAL+ +
Sbjct: 142 ELKIDITRVFWKRTXDXNDRALRSIVIGLGGSANGFPREDSFIITAASEVXAILALSENX 201
Query: 281 ADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPF 340
D++ERLGK+++ + DLG+ GA VL+KDAINP L+QT EGTP L+H GPF
Sbjct: 202 KDLKERLGKIIVALDADRKIVRISDLGIQGAXAVLLKDAINPNLVQTTEGTPALIHCGPF 261
Query: 341 ANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA 400
ANIAHG +SI+A K A KL + VTEAGFGAD+GAEKF++ R G P AV+VA
Sbjct: 262 ANIAHGTNSIIATKXAXKL---SEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVA 318
Query: 401 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMF 460
T+RALK HGG L + + EN+ ++ G NL H+ N + + VVVA+N F
Sbjct: 319 TVRALKYHGGA-------NLKNIH-EENLEALKEGFKNLRVHVENLRKFNLPVVVALNRF 370
Query: 461 ATDSKXXXXXXXXXXXXXXXXXXVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 520
+TD++ V G +G V+L AV A ++V +P +LY
Sbjct: 371 STDTE-KEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAKDV-EP-AYLYEX 427
Query: 521 DVSIKEKIDTIARS-YGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEK 579
+ +++KI+ +A+ Y A VE+S+ A+ ++ GF LP+ +AKT S SH+ + +
Sbjct: 428 NDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLR 487
Query: 580 GAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636
GAP G+ + D+ S GAGF+ L G ++ PGLP +P DVD +G +VG+S
Sbjct: 488 GAPEGYTFVVSDLFVSAGAGFVVALSGDINLXPGLPKKPNALNXDVDD-SGNIVGVS 543
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/117 (47%), Positives = 70/117 (59%), Gaps = 1/117 (0%)
Query: 31 ISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTT 90
I EIA +L LK + YG Y AK+ L LE DG ++V +TPTP GEGK+TT+
Sbjct: 5 IKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTS 64
Query: 91 VGLCQALGAFLDKKVVTCLRQPSQGPTFGIKXXXXXXXYSQVIPMDEFNLHLTGDIH 147
+GL +L K +VT LR+PS GPT G+K S+V+P DE NLH TGD H
Sbjct: 65 IGLSXSLNRIGKKSIVT-LREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDXH 120
>pdb|2EO2|A Chain A, Solution Structure Of The Insertion Region (510-573) Of
Fthfs Domain From Mouse Methylenetetrahydrofolate
Dehydrogenase (Nadp+ Dependent) 1-Like Protein
Length = 71
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 169 SQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPAS 228
+Q+DKAL+NRL P G R FS I RLKKLGI KT P LT EE+ +FARL+IDPA+
Sbjct: 9 TQTDKALYNRLVPL-VNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPAT 67
Query: 229 ITWR 232
ITW+
Sbjct: 68 ITWQ 71
>pdb|1WYT|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYT|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Apo Form
pdb|1WYU|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYU|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Holo Form
pdb|1WYV|A Chain A, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|C Chain C, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|E Chain E, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
pdb|1WYV|G Chain G, Crystal Structure Of Glycine Decarboxylase (P-Protein) Of
The Glycine Cleavage System, In Inhibitor-Bound Form
Length = 438
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 15/59 (25%)
Query: 321 NPTLMQTLEGTPVLVHAGPFANIAHGNSSI---VADKIALKLVGPGGFVVTEAGFGADI 376
NP + LE GPFA AHG ++ VAD ++L ++ P G +GADI
Sbjct: 204 NPNFLGALEDL------GPFAEAAHGAGALFVAVADPLSLGVLKPPG------AYGADI 250
>pdb|1V5C|A Chain A, The Crystal Structure Of The Inactive Form Chitosanase
From Bacillus Sp. K17 At Ph3.7
pdb|1V5D|A Chain A, The Crystal Structure Of The Active Form Chitosanase
From Bacillus Sp. K17 At Ph6.4
pdb|1V5D|B Chain B, The Crystal Structure Of The Active Form Chitosanase
From Bacillus Sp. K17 At Ph6.4
Length = 386
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
Query: 13 VSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYV 72
+ P P ++ A ++P H+++ + LN Y Y +K K L + L L G GYYV
Sbjct: 4 MKPFPQQVNYAGVIKPNHVTQ--ESLNASVRSY--YDNWKKKYLKNDLSSLPG---GYYV 56
Query: 73 ---VVG---GITPTPLGEGK 86
+ G G P EG+
Sbjct: 57 KGEITGDADGFKPLGTSEGQ 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,845,635
Number of Sequences: 62578
Number of extensions: 730927
Number of successful extensions: 1920
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1898
Number of HSP's gapped (non-prelim): 10
length of query: 636
length of database: 14,973,337
effective HSP length: 105
effective length of query: 531
effective length of database: 8,402,647
effective search space: 4461805557
effective search space used: 4461805557
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)