Query 006673
Match_columns 636
No_of_seqs 200 out of 1091
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 12:50:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006673.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006673hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02759 Formate--tetrahydrofo 100.0 7E-291 1E-295 2321.9 60.7 633 4-636 4-637 (637)
2 PTZ00386 formyl tetrahydrofola 100.0 2E-285 5E-290 2275.2 58.1 618 7-636 6-625 (625)
3 PRK13507 formate--tetrahydrofo 100.0 5E-273 1E-277 2171.3 55.4 581 11-636 2-587 (587)
4 PF01268 FTHFS: Formate--tetra 100.0 5E-270 1E-274 2152.7 38.2 555 16-636 1-557 (557)
5 COG2759 MIS1 Formyltetrahydrof 100.0 1E-265 3E-270 2065.4 48.3 553 18-636 1-554 (554)
6 PRK13506 formate--tetrahydrofo 100.0 7E-263 2E-267 2095.3 54.4 576 16-636 1-578 (578)
7 KOG4230 C1-tetrahydrofolate sy 100.0 8E-258 2E-262 2039.0 46.7 627 6-636 302-935 (935)
8 PRK13505 formate--tetrahydrofo 100.0 2E-253 4E-258 2025.9 53.6 556 15-636 1-557 (557)
9 cd00477 FTHFS Formyltetrahydro 100.0 7E-248 1E-252 1964.8 49.9 522 32-619 1-524 (524)
10 TIGR03029 EpsG chain length de 96.8 0.0013 2.8E-08 66.5 4.1 51 67-121 101-154 (274)
11 TIGR01007 eps_fam capsular exo 96.0 0.0076 1.6E-07 58.3 4.5 52 67-122 15-69 (204)
12 cd01983 Fer4_NifH The Fer4_Nif 96.0 0.066 1.4E-06 43.6 9.4 26 83-110 9-34 (99)
13 CHL00175 minD septum-site dete 95.9 0.0097 2.1E-07 60.4 4.9 55 64-122 10-67 (281)
14 PRK11519 tyrosine kinase; Prov 95.9 0.0081 1.8E-07 69.7 4.8 52 67-122 524-578 (719)
15 TIGR01005 eps_transp_fam exopo 95.4 0.013 2.8E-07 67.9 3.9 51 67-121 544-597 (754)
16 TIGR03018 pepcterm_TyrKin exop 95.3 0.023 5E-07 55.6 4.8 52 67-121 33-87 (207)
17 PRK13705 plasmid-partitioning 95.2 0.02 4.2E-07 62.2 4.5 91 28-119 39-155 (388)
18 PRK09841 cryptic autophosphory 95.2 0.02 4.3E-07 66.7 4.5 51 67-121 529-582 (726)
19 cd02033 BchX Chlorophyllide re 95.0 0.03 6.6E-07 59.9 5.1 105 428-553 183-291 (329)
20 TIGR03453 partition_RepA plasm 94.9 0.023 5E-07 61.0 3.8 91 29-120 34-153 (387)
21 PHA02519 plasmid partition pro 94.7 0.043 9.3E-07 59.8 5.4 90 29-120 40-156 (387)
22 TIGR01968 minD_bact septum sit 94.7 0.038 8.1E-07 54.4 4.4 48 69-120 1-51 (261)
23 COG2805 PilT Tfp pilus assembl 94.4 0.045 9.8E-07 58.8 4.4 44 63-112 120-163 (353)
24 TIGR00347 bioD dethiobiotin sy 94.3 0.033 7.2E-07 52.1 2.8 35 77-114 2-36 (166)
25 COG0489 Mrp ATPases involved i 94.2 0.039 8.5E-07 57.0 3.4 52 68-123 56-110 (265)
26 PRK13869 plasmid-partitioning 94.0 0.076 1.7E-06 58.0 5.4 46 70-119 122-169 (405)
27 cd00550 ArsA_ATPase Oxyanion-t 93.2 0.071 1.5E-06 54.4 3.3 47 70-122 1-50 (254)
28 cd02037 MRP-like MRP (Multiple 93.2 0.09 2E-06 49.5 3.8 34 77-111 4-37 (169)
29 COG2894 MinD Septum formation 92.9 0.11 2.4E-06 54.0 4.0 36 69-108 2-37 (272)
30 cd02036 MinD Bacterial cell di 92.6 0.11 2.4E-06 48.1 3.4 41 77-118 4-47 (179)
31 cd02117 NifH_like This family 92.3 0.15 3.1E-06 50.1 4.0 38 71-113 2-39 (212)
32 PRK13185 chlL protochlorophyll 92.2 0.15 3.3E-06 51.4 4.1 39 69-112 2-40 (270)
33 PF02374 ArsA_ATPase: Anion-tr 91.2 0.14 3E-06 54.1 2.6 56 70-133 2-59 (305)
34 PF02367 UPF0079: Uncharacteri 91.1 0.21 4.5E-06 46.9 3.4 40 67-120 13-52 (123)
35 TIGR01969 minD_arch cell divis 91.1 0.24 5.1E-06 48.7 3.9 44 77-121 5-51 (251)
36 cd02040 NifH NifH gene encodes 91.1 0.15 3.3E-06 50.9 2.7 103 435-552 158-264 (270)
37 PRK13230 nitrogenase reductase 91.0 0.15 3.3E-06 51.9 2.6 31 81-112 9-39 (279)
38 cd02032 Bchl_like This family 90.9 0.16 3.5E-06 51.3 2.7 32 81-113 8-39 (267)
39 PRK00698 tmk thymidylate kinas 90.9 0.27 5.9E-06 46.9 4.1 45 68-119 2-46 (205)
40 TIGR01281 DPOR_bchL light-inde 90.6 0.18 3.8E-06 50.9 2.6 27 81-108 8-34 (268)
41 TIGR00064 ftsY signal recognit 90.4 0.33 7.1E-06 50.5 4.5 36 67-107 70-105 (272)
42 PLN02924 thymidylate kinase 90.4 0.34 7.3E-06 49.0 4.4 47 66-118 13-59 (220)
43 TIGR03815 CpaE_hom_Actino heli 90.3 0.4 8.7E-06 50.1 5.1 51 67-121 91-144 (322)
44 PRK10037 cell division protein 90.3 0.26 5.6E-06 49.6 3.5 44 76-120 5-50 (250)
45 PF01656 CbiA: CobQ/CobB/MinD/ 90.1 0.23 5E-06 46.5 2.8 34 78-112 4-37 (195)
46 PRK13235 nifH nitrogenase redu 89.9 0.28 6E-06 50.0 3.4 34 80-114 8-41 (274)
47 TIGR01287 nifH nitrogenase iro 89.9 0.22 4.8E-06 50.5 2.7 27 81-108 8-34 (275)
48 PRK11670 antiporter inner memb 89.5 0.39 8.4E-06 52.1 4.3 48 70-121 108-158 (369)
49 PHA02518 ParA-like protein; Pr 89.4 0.28 6E-06 46.9 2.8 29 79-108 7-35 (211)
50 COG0125 Tmk Thymidylate kinase 89.3 0.5 1.1E-05 47.8 4.6 44 68-117 2-45 (208)
51 PRK13232 nifH nitrogenase redu 89.0 0.35 7.5E-06 49.2 3.3 89 436-539 159-249 (273)
52 PRK15452 putative protease; Pr 88.9 2.6 5.5E-05 47.3 10.2 156 393-567 4-175 (443)
53 PLN02591 tryptophan synthase 88.9 4.2 9.2E-05 42.4 11.2 143 409-565 28-194 (250)
54 PF06564 YhjQ: YhjQ protein; 88.7 0.45 9.7E-06 49.4 3.9 52 70-147 2-53 (243)
55 PF09140 MipZ: ATPase MipZ; I 88.7 0.19 4.1E-06 52.8 1.2 35 80-115 8-45 (261)
56 PRK13234 nifH nitrogenase redu 88.6 0.38 8.2E-06 50.2 3.3 28 80-108 11-38 (295)
57 TIGR00041 DTMP_kinase thymidyl 88.4 0.67 1.4E-05 44.2 4.7 40 69-114 3-42 (195)
58 PRK00300 gmk guanylate kinase; 88.3 0.5 1.1E-05 45.5 3.7 45 67-116 3-47 (205)
59 PRK00090 bioD dithiobiotin syn 88.3 0.34 7.4E-06 47.5 2.6 30 77-107 4-33 (222)
60 TIGR03371 cellulose_yhjQ cellu 88.2 0.42 9.2E-06 47.0 3.2 28 79-107 8-35 (246)
61 CHL00072 chlL photochlorophyll 88.0 0.36 7.9E-06 50.4 2.7 31 81-112 8-38 (290)
62 PRK13973 thymidylate kinase; P 87.9 0.77 1.7E-05 45.5 4.8 42 69-116 3-44 (213)
63 cd01672 TMPK Thymidine monopho 87.5 0.87 1.9E-05 42.6 4.8 41 70-116 1-41 (200)
64 TIGR02016 BchX chlorophyllide 87.2 0.54 1.2E-05 49.3 3.5 34 81-115 8-41 (296)
65 PRK13233 nifH nitrogenase redu 86.6 0.58 1.2E-05 47.5 3.2 27 80-107 9-36 (275)
66 TIGR00150 HI0065_YjeE ATPase, 86.5 0.66 1.4E-05 44.0 3.3 72 67-163 20-92 (133)
67 cd02035 ArsA ArsA ATPase funct 86.5 0.64 1.4E-05 46.1 3.4 27 81-108 7-33 (217)
68 PRK13768 GTPase; Provisional 86.4 0.91 2E-05 46.5 4.5 88 448-539 160-251 (253)
69 PRK10818 cell division inhibit 86.2 0.67 1.5E-05 46.7 3.4 36 69-108 2-37 (270)
70 COG2804 PulE Type II secretory 86.0 0.76 1.6E-05 52.2 4.0 42 65-113 255-296 (500)
71 PRK04296 thymidine kinase; Pro 86.0 0.95 2.1E-05 44.2 4.3 45 69-120 2-46 (190)
72 PRK13111 trpA tryptophan synth 86.0 5.5 0.00012 41.6 10.0 153 401-565 28-205 (258)
73 PRK10416 signal recognition pa 86.0 0.91 2E-05 48.4 4.4 36 67-107 112-147 (318)
74 PRK10646 ADP-binding protein; 85.9 0.75 1.6E-05 44.7 3.5 28 67-98 26-53 (153)
75 PF13500 AAA_26: AAA domain; P 85.9 0.6 1.3E-05 45.2 2.8 32 77-110 5-36 (199)
76 CHL00200 trpA tryptophan synth 85.8 7.2 0.00016 40.9 10.8 144 409-565 41-207 (263)
77 cd03110 Fer4_NifH_child This p 85.3 0.65 1.4E-05 43.9 2.7 41 77-122 4-47 (179)
78 TIGR00262 trpA tryptophan synt 85.0 12 0.00026 38.9 11.8 154 401-565 26-203 (256)
79 COG1149 MinD superfamily P-loo 84.9 0.95 2.1E-05 48.1 3.9 170 273-535 109-281 (284)
80 PF02223 Thymidylate_kin: Thym 84.9 0.59 1.3E-05 44.5 2.2 34 82-117 5-38 (186)
81 PF02421 FeoB_N: Ferrous iron 84.8 0.93 2E-05 44.0 3.5 58 443-503 98-156 (156)
82 cd03111 CpaE_like This protein 84.8 0.81 1.8E-05 40.7 2.9 37 76-113 3-40 (106)
83 COG0003 ArsA Predicted ATPase 84.5 1 2.2E-05 48.5 4.0 68 70-164 3-72 (322)
84 PRK13236 nitrogenase reductase 84.4 0.71 1.5E-05 48.2 2.7 31 81-112 14-44 (296)
85 COG0802 Predicted ATPase or ki 84.0 1 2.3E-05 43.8 3.4 28 67-98 23-50 (149)
86 TIGR00475 selB selenocysteine- 83.9 5.1 0.00011 46.2 9.4 99 377-509 59-167 (581)
87 TIGR03263 guanyl_kin guanylate 83.6 0.86 1.9E-05 42.9 2.7 43 69-116 1-43 (180)
88 cd04165 GTPBP1_like GTPBP1-lik 83.5 2.9 6.4E-05 42.1 6.6 38 438-475 126-163 (224)
89 PRK14974 cell division protein 83.2 1.5 3.2E-05 47.4 4.6 36 67-107 138-173 (336)
90 PRK05480 uridine/cytidine kina 82.9 1.6 3.4E-05 42.6 4.3 26 68-97 5-30 (209)
91 PRK08233 hypothetical protein; 82.8 0.9 2E-05 42.4 2.5 25 69-97 3-27 (182)
92 PRK13976 thymidylate kinase; P 82.7 1.5 3.3E-05 43.9 4.2 40 70-113 1-40 (209)
93 PRK13231 nitrogenase reductase 82.5 0.82 1.8E-05 46.1 2.2 26 81-109 10-35 (264)
94 cd02025 PanK Pantothenate kina 82.3 1.2 2.6E-05 44.8 3.3 35 81-139 7-41 (220)
95 cd02042 ParA ParA and ParB of 82.3 1.1 2.5E-05 38.5 2.7 32 81-113 8-39 (104)
96 TIGR03499 FlhF flagellar biosy 82.3 1.8 3.9E-05 45.1 4.6 27 68-98 193-219 (282)
97 PRK12374 putative dithiobiotin 81.6 1.1 2.3E-05 45.1 2.6 34 72-110 5-38 (231)
98 PRK13849 putative crown gall t 81.5 1.4 3.1E-05 44.7 3.5 32 76-108 5-36 (231)
99 PRK10867 signal recognition pa 81.1 1.8 3.9E-05 48.4 4.4 36 69-109 100-136 (433)
100 PF13614 AAA_31: AAA domain; P 81.1 2.1 4.6E-05 39.1 4.2 48 70-121 1-51 (157)
101 COG1797 CobB Cobyrinic acid a, 81.0 0.95 2.1E-05 50.8 2.2 26 78-104 6-31 (451)
102 cd01828 sialate_O-acetylestera 80.7 13 0.00028 34.4 9.3 94 364-481 21-126 (169)
103 cd03115 SRP The signal recogni 80.7 1.4 3.1E-05 41.4 3.0 28 81-109 8-35 (173)
104 PRK06278 cobyrinic acid a,c-di 80.7 1.9 4.1E-05 48.8 4.4 61 32-98 193-264 (476)
105 cd01822 Lysophospholipase_L1_l 80.6 47 0.001 30.6 12.9 107 348-481 23-137 (177)
106 PRK00089 era GTPase Era; Revie 80.4 21 0.00045 36.7 11.5 76 440-521 103-180 (292)
107 COG1192 Soj ATPases involved i 80.3 1.1 2.5E-05 44.8 2.3 46 434-479 157-206 (259)
108 PRK00889 adenylylsulfate kinas 80.1 2.3 5E-05 40.2 4.2 34 67-105 2-35 (175)
109 TIGR01420 pilT_fam pilus retra 79.9 2.3 4.9E-05 45.5 4.5 40 68-112 121-160 (343)
110 PRK07933 thymidylate kinase; V 79.8 2.9 6.3E-05 41.8 5.0 40 70-115 1-40 (213)
111 TIGR00436 era GTP-binding prot 79.6 17 0.00038 37.2 10.6 89 443-533 100-189 (270)
112 PRK12726 flagellar biosynthesi 78.9 2.4 5.2E-05 47.3 4.4 35 67-106 204-238 (407)
113 PRK00131 aroK shikimate kinase 78.7 1.8 4E-05 39.8 3.0 28 67-98 2-29 (175)
114 cd04145 M_R_Ras_like M-Ras/R-R 78.6 12 0.00026 33.8 8.2 56 449-507 106-163 (164)
115 PRK10436 hypothetical protein; 78.0 2.2 4.7E-05 48.1 3.8 40 68-113 217-256 (462)
116 PF01583 APS_kinase: Adenylyls 77.8 2.6 5.5E-05 41.2 3.8 36 68-108 1-36 (156)
117 PTZ00301 uridine kinase; Provi 77.6 2.1 4.6E-05 43.1 3.2 27 70-100 4-30 (210)
118 PRK00771 signal recognition pa 77.3 2.8 6E-05 47.0 4.4 35 69-108 95-129 (437)
119 PF00009 GTP_EFTU: Elongation 77.3 13 0.00029 35.5 8.5 69 438-507 110-186 (188)
120 PTZ00141 elongation factor 1- 77.2 2.5 5.3E-05 47.1 3.9 72 378-476 95-175 (446)
121 PF03029 ATP_bind_1: Conserved 76.9 2 4.4E-05 43.9 3.0 87 437-531 143-232 (238)
122 TIGR00485 EF-Tu translation el 76.4 12 0.00025 40.8 8.7 42 438-479 115-162 (394)
123 TIGR00379 cobB cobyrinic acid 76.4 1.8 4E-05 48.0 2.7 31 77-108 4-34 (449)
124 COG0532 InfB Translation initi 76.3 9.1 0.0002 44.0 8.1 102 376-508 63-170 (509)
125 PRK05286 dihydroorotate dehydr 76.3 60 0.0013 35.0 13.9 105 435-545 123-247 (344)
126 cd01131 PilT Pilus retraction 76.2 3.5 7.7E-05 40.5 4.3 38 71-113 3-40 (198)
127 COG0826 Collagenase and relate 76.1 8.1 0.00018 42.1 7.4 115 438-567 50-178 (347)
128 cd04138 H_N_K_Ras_like H-Ras/N 76.1 15 0.00033 32.7 8.0 55 449-506 105-160 (162)
129 PRK06696 uridine kinase; Valid 75.7 3.1 6.6E-05 41.4 3.8 29 69-102 22-50 (223)
130 PRK03846 adenylylsulfate kinas 75.4 3.6 7.9E-05 40.1 4.2 35 67-106 22-56 (198)
131 PRK15494 era GTPase Era; Provi 75.4 20 0.00044 38.4 10.1 86 442-533 152-241 (339)
132 cd04112 Rab26 Rab26 subfamily. 75.2 5.6 0.00012 38.0 5.3 58 449-509 105-164 (191)
133 cd01394 radB RadB. The archaea 74.8 3.6 7.8E-05 40.2 3.9 36 67-107 17-52 (218)
134 TIGR02237 recomb_radB DNA repa 74.7 3.6 7.9E-05 39.8 3.9 34 67-105 10-43 (209)
135 cd03109 DTBS Dethiobiotin synt 74.2 2.6 5.6E-05 39.1 2.7 28 81-110 7-34 (134)
136 TIGR02524 dot_icm_DotB Dot/Icm 74.2 4.3 9.4E-05 44.2 4.7 44 67-114 132-176 (358)
137 PF13604 AAA_30: AAA domain; P 73.8 4.9 0.00011 39.6 4.6 36 68-108 17-52 (196)
138 PRK13896 cobyrinic acid a,c-di 73.7 2.1 4.5E-05 47.9 2.2 30 72-105 4-33 (433)
139 TIGR02538 type_IV_pilB type IV 73.7 3 6.5E-05 47.8 3.6 39 69-113 316-354 (564)
140 cd04127 Rab27A Rab27a subfamil 73.7 11 0.00023 35.0 6.7 69 436-507 102-176 (180)
141 PRK13210 putative L-xylulose 5 73.4 31 0.00067 34.8 10.4 102 426-531 83-200 (284)
142 PRK12298 obgE GTPase CgtA; Rev 73.3 26 0.00057 38.6 10.5 68 449-521 274-342 (390)
143 cd02038 FleN-like FleN is a me 73.2 4.2 9.1E-05 37.6 3.8 32 80-112 7-38 (139)
144 cd04106 Rab23_lke Rab23-like s 73.1 17 0.00036 32.9 7.6 52 449-503 105-158 (162)
145 TIGR00235 udk uridine kinase. 73.0 3.1 6.6E-05 40.8 3.0 28 66-97 3-30 (207)
146 PRK09554 feoB ferrous iron tra 72.6 9 0.0002 45.8 7.2 83 446-534 108-192 (772)
147 PF07015 VirC1: VirC1 protein; 72.0 2.7 5.9E-05 43.6 2.5 32 74-107 4-35 (231)
148 COG0370 FeoB Fe2+ transport sy 71.9 5.7 0.00012 46.7 5.2 89 438-532 93-186 (653)
149 TIGR03470 HpnH hopanoid biosyn 71.8 12 0.00027 39.7 7.4 57 436-492 148-204 (318)
150 COG1213 Predicted sugar nucleo 71.1 8 0.00017 40.5 5.6 84 438-552 33-119 (239)
151 PLN00043 elongation factor 1-a 71.1 6.2 0.00013 44.1 5.2 77 377-480 94-183 (447)
152 KOG0635 Adenosine 5'-phosphosu 70.9 6 0.00013 39.7 4.4 35 67-106 29-63 (207)
153 PRK07259 dihydroorotate dehydr 70.5 83 0.0018 32.9 13.0 92 447-543 88-189 (301)
154 cd04124 RabL2 RabL2 subfamily. 70.3 36 0.00078 31.3 9.3 69 435-507 87-157 (161)
155 PRK01077 cobyrinic acid a,c-di 70.0 2.7 5.8E-05 46.7 2.0 33 71-107 5-37 (451)
156 PRK05541 adenylylsulfate kinas 70.0 6.6 0.00014 37.2 4.4 35 67-106 5-39 (176)
157 TIGR00231 small_GTP small GTP- 70.0 24 0.00052 30.4 7.6 60 441-502 99-158 (161)
158 PRK13125 trpA tryptophan synth 69.7 71 0.0015 32.7 12.0 126 425-564 51-189 (244)
159 TIGR02533 type_II_gspE general 69.6 4.1 8.9E-05 46.0 3.4 39 67-112 241-279 (486)
160 PRK10512 selenocysteinyl-tRNA- 69.5 19 0.0004 42.1 8.7 68 438-508 91-166 (614)
161 TIGR02525 plasmid_TraJ plasmid 69.4 6.3 0.00014 43.3 4.7 42 69-114 149-190 (372)
162 cd01897 NOG NOG1 is a nucleola 69.3 26 0.00057 31.9 8.1 54 450-506 113-166 (168)
163 PF01261 AP_endonuc_2: Xylose 69.0 26 0.00057 32.8 8.2 91 427-521 62-166 (213)
164 cd04501 SGNH_hydrolase_like_4 68.8 55 0.0012 30.6 10.3 51 428-481 77-140 (183)
165 PRK09361 radB DNA repair and r 68.7 6 0.00013 39.0 4.0 35 67-106 21-55 (225)
166 COG0529 CysC Adenylylsulfate k 68.7 6.4 0.00014 40.1 4.2 36 67-107 21-56 (197)
167 PRK00784 cobyric acid synthase 68.7 3.3 7.1E-05 46.5 2.4 32 71-106 4-35 (488)
168 TIGR02322 phosphon_PhnN phosph 68.6 4 8.6E-05 38.6 2.6 26 69-98 1-26 (179)
169 PRK09856 fructoselysine 3-epim 68.4 41 0.00089 34.0 9.9 60 428-489 81-151 (275)
170 smart00382 AAA ATPases associa 68.2 3.6 7.9E-05 34.6 2.1 26 69-98 2-27 (148)
171 TIGR01425 SRP54_euk signal rec 68.2 6.3 0.00014 44.2 4.4 35 69-108 100-134 (429)
172 PHA00729 NTP-binding motif con 67.9 4.2 9.1E-05 42.0 2.8 24 71-98 19-42 (226)
173 cd04107 Rab32_Rab38 Rab38/Rab3 67.8 32 0.0007 33.1 8.7 59 448-508 108-168 (201)
174 PRK15453 phosphoribulokinase; 67.4 6.4 0.00014 42.2 4.1 32 68-104 4-35 (290)
175 PTZ00327 eukaryotic translatio 67.3 22 0.00049 40.1 8.5 99 377-508 126-233 (460)
176 COG0771 MurD UDP-N-acetylmuram 66.8 6.1 0.00013 44.6 4.0 98 29-161 83-193 (448)
177 cd02028 UMPK_like Uridine mono 66.6 5.9 0.00013 38.5 3.4 29 71-104 1-29 (179)
178 cd01129 PulE-GspE PulE/GspE Th 66.6 7.2 0.00016 40.5 4.2 39 69-113 80-118 (264)
179 cd00019 AP2Ec AP endonuclease 66.6 34 0.00075 34.8 9.1 97 424-522 72-179 (279)
180 smart00763 AAA_PrkA PrkA AAA d 66.5 4.4 9.5E-05 44.6 2.8 79 46-143 52-133 (361)
181 TIGR00959 ffh signal recogniti 66.1 4.7 0.0001 45.0 3.0 35 70-108 100-134 (428)
182 cd04738 DHOD_2_like Dihydrooro 65.2 1.4E+02 0.0029 32.1 13.5 101 439-544 117-237 (327)
183 PRK05703 flhF flagellar biosyn 65.1 8.5 0.00019 42.8 4.7 26 68-97 220-245 (424)
184 PF00448 SRP54: SRP54-type pro 64.8 5.7 0.00012 39.5 3.0 24 81-105 9-32 (196)
185 cd02023 UMPK Uridine monophosp 64.4 5.4 0.00012 38.5 2.7 17 81-97 7-23 (198)
186 PLN02348 phosphoribulokinase 64.2 8.7 0.00019 42.8 4.5 25 70-98 50-74 (395)
187 cd00227 CPT Chloramphenicol (C 64.2 6.2 0.00013 37.6 3.0 27 68-98 1-27 (175)
188 PRK05632 phosphate acetyltrans 64.1 4.8 0.0001 47.2 2.6 35 71-110 4-38 (684)
189 TIGR00455 apsK adenylylsulfate 64.0 9.3 0.0002 36.5 4.2 33 67-104 16-48 (184)
190 PF13245 AAA_19: Part of AAA d 63.9 6.7 0.00014 33.5 2.8 25 69-97 10-34 (76)
191 cd00154 Rab Rab family. Rab G 63.8 31 0.00068 30.1 7.2 63 437-502 89-156 (159)
192 cd04163 Era Era subfamily. Er 63.8 36 0.00079 29.9 7.6 63 440-504 101-165 (168)
193 cd04101 RabL4 RabL4 (Rab-like4 63.7 23 0.0005 32.1 6.5 55 449-506 106-162 (164)
194 cd00046 DEXDc DEAD-like helica 63.4 7 0.00015 33.0 2.9 18 81-98 8-25 (144)
195 PRK13886 conjugal transfer pro 63.3 9.6 0.00021 39.7 4.4 40 70-113 3-42 (241)
196 cd00958 DhnA Class I fructose- 63.2 90 0.0019 31.2 11.1 90 445-546 117-217 (235)
197 TIGR03881 KaiC_arch_4 KaiC dom 63.1 10 0.00022 37.3 4.4 33 67-105 18-51 (229)
198 PF05729 NACHT: NACHT domain 62.8 7.2 0.00016 35.2 3.0 25 70-98 1-25 (166)
199 cd01890 LepA LepA subfamily. 62.6 25 0.00055 32.4 6.6 61 447-507 116-176 (179)
200 TIGR00542 hxl6Piso_put hexulos 62.5 58 0.0013 33.2 9.8 91 426-521 83-184 (279)
201 COG0194 Gmk Guanylate kinase [ 62.5 8.5 0.00018 39.1 3.7 46 68-119 3-48 (191)
202 PF00485 PRK: Phosphoribulokin 62.5 5.3 0.00011 38.8 2.2 30 71-105 1-30 (194)
203 COG1838 FumA Tartrate dehydrat 62.4 8.4 0.00018 38.9 3.6 153 279-469 12-177 (184)
204 PRK13764 ATPase; Provisional 62.3 8.2 0.00018 45.1 4.1 39 68-112 256-294 (602)
205 TIGR02493 PFLA pyruvate format 62.1 18 0.00038 35.9 5.9 43 438-480 144-188 (235)
206 cd00945 Aldolase_Class_I Class 62.1 46 0.001 31.2 8.4 99 438-543 98-201 (201)
207 cd01866 Rab2 Rab2 subfamily. 62.0 21 0.00045 33.1 6.0 68 436-506 92-164 (168)
208 cd04724 Tryptophan_synthase_al 61.8 1E+02 0.0022 31.7 11.4 127 428-566 51-193 (242)
209 PRK06852 aldolase; Validated 61.6 84 0.0018 34.1 11.1 104 435-542 152-264 (304)
210 TIGR00677 fadh2_euk methylenet 61.5 26 0.00056 37.0 7.2 127 339-480 138-277 (281)
211 PRK12724 flagellar biosynthesi 61.4 9.8 0.00021 42.9 4.3 37 68-108 222-258 (432)
212 PF00290 Trp_syntA: Tryptophan 61.3 8.6 0.00019 40.4 3.6 151 401-565 26-203 (259)
213 PRK07565 dihydroorotate dehydr 61.2 1E+02 0.0022 33.1 11.7 49 434-485 84-133 (334)
214 PRK07667 uridine kinase; Provi 61.2 11 0.00024 36.8 4.2 31 69-104 17-47 (193)
215 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 61.1 24 0.00052 32.2 6.2 69 436-507 90-163 (166)
216 COG0159 TrpA Tryptophan syntha 61.1 48 0.001 35.4 9.0 151 401-565 33-210 (265)
217 TIGR00676 fadh2 5,10-methylene 60.8 22 0.00048 37.1 6.5 100 353-460 148-261 (272)
218 PF13207 AAA_17: AAA domain; P 60.8 5.3 0.00012 34.9 1.8 22 72-97 2-23 (121)
219 PRK14722 flhF flagellar biosyn 60.8 12 0.00025 41.4 4.7 33 67-103 135-167 (374)
220 PF00437 T2SE: Type II/IV secr 60.6 11 0.00024 38.2 4.3 39 68-112 126-164 (270)
221 smart00518 AP2Ec AP endonuclea 60.4 72 0.0016 32.2 10.0 97 424-522 71-176 (273)
222 cd00009 AAA The AAA+ (ATPases 60.4 14 0.0003 31.7 4.2 27 67-97 17-43 (151)
223 PRK06067 flagellar accessory p 59.5 13 0.00029 36.9 4.5 42 66-112 22-64 (234)
224 COG0283 Cmk Cytidylate kinase 59.3 5.1 0.00011 41.5 1.5 18 81-98 12-29 (222)
225 PF13238 AAA_18: AAA domain; P 59.1 8.4 0.00018 33.4 2.7 22 72-97 1-22 (129)
226 PF13086 AAA_11: AAA domain; P 58.9 8 0.00017 36.7 2.7 23 71-97 19-41 (236)
227 cd04136 Rap_like Rap-like subf 58.9 42 0.0009 30.2 7.2 55 449-506 105-161 (163)
228 cd00881 GTP_translation_factor 58.4 35 0.00077 31.3 6.8 65 440-507 104-186 (189)
229 PF00625 Guanylate_kin: Guanyl 57.9 8.6 0.00019 36.9 2.8 43 69-115 2-44 (183)
230 cd02029 PRK_like Phosphoribulo 57.6 9.8 0.00021 40.6 3.3 28 72-104 2-29 (277)
231 TIGR00036 dapB dihydrodipicoli 57.4 32 0.00069 35.8 7.0 98 438-556 80-178 (266)
232 COG2229 Predicted GTPase [Gene 57.4 31 0.00067 35.1 6.6 30 451-481 122-154 (187)
233 cd04740 DHOD_1B_like Dihydroor 57.2 2.4E+02 0.0053 29.3 14.3 98 441-543 79-186 (296)
234 cd02034 CooC The accessory pro 57.2 8.6 0.00019 35.2 2.5 42 81-123 7-49 (116)
235 cd02033 BchX Chlorophyllide re 56.9 38 0.00083 36.8 7.7 52 66-122 28-82 (329)
236 KOG1207 Diacetyl reductase/L-x 56.7 12 0.00027 38.3 3.7 36 68-112 6-41 (245)
237 TIGR03420 DnaA_homol_Hda DnaA 56.6 13 0.00028 36.2 3.8 33 67-104 36-68 (226)
238 cd04115 Rab33B_Rab33A Rab33B/R 56.5 58 0.0013 30.2 7.9 57 449-506 108-167 (170)
239 PRK13209 L-xylulose 5-phosphat 56.4 87 0.0019 31.8 9.9 90 426-520 88-188 (283)
240 cd04139 RalA_RalB RalA/RalB su 56.3 54 0.0012 29.4 7.5 68 438-508 92-162 (164)
241 PLN02495 oxidoreductase, actin 56.2 89 0.0019 34.8 10.5 113 427-546 87-217 (385)
242 PRK06547 hypothetical protein; 56.2 8.6 0.00019 37.5 2.5 25 69-97 15-39 (172)
243 PRK06762 hypothetical protein; 56.1 9.5 0.00021 35.6 2.7 25 69-97 2-26 (166)
244 PRK14738 gmk guanylate kinase; 55.9 13 0.00027 36.9 3.6 26 65-94 9-34 (206)
245 cd04104 p47_IIGP_like p47 (47- 55.4 57 0.0012 31.7 8.0 68 441-508 98-184 (197)
246 PRK00098 GTPase RsgA; Reviewed 55.4 74 0.0016 33.5 9.4 60 439-501 100-160 (298)
247 PRK06761 hypothetical protein; 55.4 12 0.00026 39.7 3.6 39 69-113 3-41 (282)
248 cd01891 TypA_BipA TypA (tyrosi 55.4 52 0.0011 31.5 7.6 35 442-476 109-146 (194)
249 PRK13975 thymidylate kinase; P 55.4 9.8 0.00021 36.3 2.7 26 69-98 2-27 (196)
250 KOG1145 Mitochondrial translat 55.3 23 0.00049 41.6 5.9 129 342-508 161-316 (683)
251 cd04175 Rap1 Rap1 subgroup. T 55.3 42 0.00091 30.6 6.7 56 449-507 105-162 (164)
252 PRK04040 adenylate kinase; Pro 55.2 10 0.00022 37.4 2.9 25 69-97 2-26 (188)
253 cd00945 Aldolase_Class_I Class 55.1 1.3E+02 0.0029 28.2 10.2 112 450-564 48-176 (201)
254 cd01879 FeoB Ferrous iron tran 54.9 52 0.0011 29.4 7.1 59 446-507 97-156 (158)
255 PRK15447 putative protease; Pr 54.9 33 0.00071 36.4 6.7 111 439-567 50-177 (301)
256 smart00173 RAS Ras subfamily o 54.8 72 0.0016 28.9 8.1 56 449-507 104-161 (164)
257 cd00876 Ras Ras family. The R 54.6 53 0.0011 29.2 7.1 66 437-505 90-158 (160)
258 COG1855 ATPase (PilT family) [ 54.4 14 0.0003 42.5 4.0 47 58-112 254-300 (604)
259 cd01867 Rab8_Rab10_Rab13_like 54.3 59 0.0013 30.0 7.6 56 449-507 107-164 (167)
260 PRK13946 shikimate kinase; Pro 54.1 9.2 0.0002 37.0 2.3 26 69-98 10-35 (184)
261 PTZ00369 Ras-like protein; Pro 54.0 65 0.0014 30.7 8.0 56 449-507 109-166 (189)
262 TIGR03880 KaiC_arch_3 KaiC dom 54.0 19 0.00042 35.5 4.6 40 67-111 14-54 (224)
263 cd00561 CobA_CobO_BtuR ATP:cor 53.9 12 0.00026 36.6 3.1 27 80-107 9-35 (159)
264 TIGR00708 cobA cob(I)alamin ad 53.8 12 0.00027 37.1 3.2 36 67-108 4-39 (173)
265 PF03205 MobB: Molybdopterin g 53.6 29 0.00063 32.7 5.5 48 71-123 2-49 (140)
266 PRK12289 GTPase RsgA; Reviewed 53.5 46 0.00099 36.4 7.7 62 439-503 109-170 (352)
267 cd01881 Obg_like The Obg-like 53.3 52 0.0011 29.9 7.0 54 449-505 119-174 (176)
268 PF06068 TIP49: TIP49 C-termin 53.2 9.5 0.00021 42.6 2.5 27 68-98 49-75 (398)
269 cd01894 EngA1 EngA1 subfamily. 53.1 49 0.0011 29.3 6.6 58 443-505 98-155 (157)
270 cd01834 SGNH_hydrolase_like_2 53.1 1.7E+02 0.0036 27.1 10.4 98 348-462 18-115 (191)
271 PRK04308 murD UDP-N-acetylmura 53.1 15 0.00032 40.2 3.9 31 68-105 109-139 (445)
272 smart00175 RAB Rab subfamily o 53.1 41 0.00088 30.2 6.2 56 449-507 104-161 (164)
273 PRK05306 infB translation init 53.0 38 0.00082 41.0 7.5 64 440-505 379-449 (787)
274 PRK14527 adenylate kinase; Pro 53.0 12 0.00026 36.1 2.9 28 67-98 4-31 (191)
275 PRK04663 murD UDP-N-acetylmura 52.9 15 0.00033 40.2 4.1 31 69-106 108-138 (438)
276 COG1703 ArgK Putative periplas 52.8 21 0.00045 39.0 4.9 55 56-115 37-92 (323)
277 cd00880 Era_like Era (E. coli 52.7 99 0.0022 26.5 8.3 61 442-505 96-161 (163)
278 cd01859 MJ1464 MJ1464. This f 52.7 69 0.0015 29.6 7.7 59 447-508 38-96 (156)
279 cd00071 GMPK Guanosine monopho 52.5 7.4 0.00016 36.2 1.3 35 81-115 7-41 (137)
280 PRK12735 elongation factor Tu; 52.4 77 0.0017 34.7 9.2 42 438-479 115-162 (396)
281 PRK10536 hypothetical protein; 52.2 18 0.00039 38.4 4.2 37 69-110 74-111 (262)
282 PLN02165 adenylate isopentenyl 52.1 11 0.00024 41.1 2.8 29 66-98 40-68 (334)
283 TIGR03878 thermo_KaiC_2 KaiC d 51.9 18 0.00039 37.2 4.2 35 67-106 34-68 (259)
284 smart00174 RHO Rho (Ras homolo 51.8 95 0.0021 28.5 8.5 63 443-507 93-171 (174)
285 PRK04213 GTP-binding protein; 51.7 77 0.0017 30.2 8.1 61 444-508 124-192 (201)
286 cd03278 ABC_SMC_barmotin Barmo 51.6 11 0.00025 37.1 2.5 58 44-117 5-62 (197)
287 PF01113 DapB_N: Dihydrodipico 51.4 20 0.00043 32.9 4.0 37 438-477 79-115 (124)
288 PRK13974 thymidylate kinase; P 51.3 23 0.00051 35.1 4.7 43 69-116 3-49 (212)
289 cd00959 DeoC 2-deoxyribose-5-p 50.8 56 0.0012 32.4 7.3 45 450-495 116-160 (203)
290 PRK03839 putative kinase; Prov 50.5 13 0.00027 35.4 2.6 24 71-98 2-25 (180)
291 cd00877 Ran Ran (Ras-related n 50.4 80 0.0017 29.4 7.9 66 439-508 94-159 (166)
292 cd02021 GntK Gluconate kinase 50.4 9.8 0.00021 34.8 1.8 24 71-98 1-24 (150)
293 cd01860 Rab5_related Rab5-rela 50.4 71 0.0015 28.8 7.3 55 449-506 105-161 (163)
294 PRK01368 murD UDP-N-acetylmura 50.3 18 0.00039 40.4 4.1 64 69-146 104-168 (454)
295 PF00004 AAA: ATPase family as 50.3 8.6 0.00019 33.5 1.3 18 81-98 6-23 (132)
296 COG4240 Predicted kinase [Gene 50.3 13 0.00029 39.4 2.9 35 73-109 51-85 (300)
297 COG0857 Pta BioD-like N-termin 50.0 12 0.00026 41.0 2.7 27 78-105 8-34 (354)
298 TIGR03598 GTPase_YsxC ribosome 49.9 34 0.00074 32.3 5.4 36 444-479 123-162 (179)
299 TIGR00176 mobB molybdopterin-g 49.9 14 0.00029 35.5 2.7 27 82-110 8-34 (155)
300 TIGR03574 selen_PSTK L-seryl-t 49.8 17 0.00036 36.7 3.5 30 71-105 1-30 (249)
301 PRK05439 pantothenate kinase; 49.7 14 0.0003 39.9 3.0 42 71-140 88-129 (311)
302 cd00983 recA RecA is a bacter 49.3 18 0.0004 39.2 3.9 69 31-106 10-87 (325)
303 PF13191 AAA_16: AAA ATPase do 49.2 16 0.00035 33.8 3.0 31 66-100 21-51 (185)
304 PRK08154 anaerobic benzoate ca 49.2 16 0.00035 38.6 3.4 27 67-97 131-157 (309)
305 PF02171 Piwi: Piwi domain; I 49.0 49 0.0011 34.2 6.8 120 351-479 50-182 (302)
306 cd01863 Rab18 Rab18 subfamily. 49.0 70 0.0015 28.9 7.1 55 448-505 104-159 (161)
307 cd02940 DHPD_FMN Dihydropyrimi 49.0 3.5E+02 0.0075 28.6 13.8 95 442-543 89-200 (299)
308 PF07005 DUF1537: Protein of u 48.9 16 0.00034 36.3 3.1 69 427-508 9-77 (223)
309 PRK04165 acetyl-CoA decarbonyl 48.8 27 0.00058 39.7 5.1 87 381-485 130-231 (450)
310 cd04132 Rho4_like Rho4-like su 48.5 91 0.002 29.2 8.0 59 449-509 104-168 (187)
311 TIGR01087 murD UDP-N-acetylmur 48.5 20 0.00043 38.9 4.0 32 68-106 101-132 (433)
312 KOG0744 AAA+-type ATPase [Post 48.5 14 0.0003 41.0 2.7 27 68-98 176-202 (423)
313 PRK02006 murD UDP-N-acetylmura 48.4 19 0.00042 40.1 4.0 32 69-107 121-152 (498)
314 cd01854 YjeQ_engC YjeQ/EngC. 48.3 60 0.0013 34.0 7.3 61 438-501 97-157 (287)
315 cd04119 RJL RJL (RabJ-Like) su 48.3 93 0.002 27.9 7.7 56 449-507 109-166 (168)
316 cd01130 VirB11-like_ATPase Typ 47.9 14 0.0003 35.8 2.4 27 67-97 23-49 (186)
317 TIGR00539 hemN_rel putative ox 47.9 57 0.0012 35.1 7.3 81 402-486 103-187 (360)
318 cd01861 Rab6 Rab6 subfamily. 47.8 64 0.0014 29.0 6.6 67 436-505 88-159 (161)
319 PF13555 AAA_29: P-loop contai 47.8 24 0.00051 29.8 3.5 43 44-97 5-47 (62)
320 TIGR03594 GTPase_EngA ribosome 47.7 76 0.0016 34.4 8.2 63 443-508 276-344 (429)
321 TIGR00750 lao LAO/AO transport 47.7 30 0.00065 36.3 5.1 41 67-112 32-72 (300)
322 TIGR00437 feoB ferrous iron tr 47.6 43 0.00093 38.9 6.7 59 446-507 95-154 (591)
323 PRK13813 orotidine 5'-phosphat 47.5 1.8E+02 0.004 28.7 10.3 44 438-481 94-141 (215)
324 PRK01060 endonuclease IV; Prov 47.4 1.3E+02 0.0027 30.7 9.3 97 423-521 75-181 (281)
325 TIGR00554 panK_bact pantothena 47.4 17 0.00036 38.8 3.1 36 81-140 70-105 (290)
326 PRK12727 flagellar biosynthesi 47.3 23 0.0005 41.3 4.4 28 67-98 348-375 (559)
327 PRK01438 murD UDP-N-acetylmura 47.2 21 0.00045 39.4 4.0 33 68-107 121-153 (480)
328 KOG1970 Checkpoint RAD17-RFC c 47.2 12 0.00026 43.6 2.2 29 65-97 106-134 (634)
329 PLN02748 tRNA dimethylallyltra 47.0 15 0.00031 41.9 2.8 29 66-98 19-47 (468)
330 cd00984 DnaB_C DnaB helicase C 46.9 29 0.00063 34.3 4.6 54 67-158 11-64 (242)
331 TIGR02768 TraA_Ti Ti-type conj 46.8 22 0.00048 42.4 4.3 35 69-108 368-402 (744)
332 PF03215 Rad17: Rad17 cell cyc 46.7 16 0.00036 41.8 3.2 29 66-98 42-70 (519)
333 COG1159 Era GTPase [General fu 46.7 1.3E+02 0.0029 32.7 9.7 92 441-533 105-197 (298)
334 cd00878 Arf_Arl Arf (ADP-ribos 46.7 71 0.0015 28.8 6.8 56 448-503 98-155 (158)
335 cd01122 GP4d_helicase GP4d_hel 46.7 25 0.00054 35.5 4.1 27 67-97 28-54 (271)
336 PRK12723 flagellar biosynthesi 46.6 24 0.00053 39.1 4.3 25 69-97 174-198 (388)
337 PF04055 Radical_SAM: Radical 46.5 47 0.001 29.4 5.5 39 436-474 126-165 (166)
338 TIGR02109 PQQ_syn_pqqE coenzym 46.4 62 0.0013 34.4 7.2 50 436-486 131-180 (358)
339 TIGR03877 thermo_KaiC_1 KaiC d 46.4 28 0.0006 35.1 4.4 40 67-112 19-60 (237)
340 PRK08533 flagellar accessory p 46.3 25 0.00054 35.7 4.1 33 67-104 22-54 (230)
341 PLN02840 tRNA dimethylallyltra 46.2 15 0.00033 41.2 2.8 28 67-98 19-46 (421)
342 PRK13948 shikimate kinase; Pro 46.2 18 0.00039 35.8 2.9 28 67-98 8-35 (182)
343 TIGR02385 RelE_StbE addiction 46.2 25 0.00054 29.0 3.4 50 540-590 2-61 (88)
344 cd01892 Miro2 Miro2 subfamily. 46.1 59 0.0013 30.5 6.3 69 438-508 95-166 (169)
345 PRK03803 murD UDP-N-acetylmura 45.9 22 0.00048 38.9 3.9 33 68-107 107-139 (448)
346 TIGR03234 OH-pyruv-isom hydrox 45.8 1.3E+02 0.0028 30.1 9.1 85 435-522 82-180 (254)
347 cd04176 Rap2 Rap2 subgroup. T 45.8 1E+02 0.0022 28.0 7.6 65 438-505 93-160 (163)
348 COG0132 BioD Dethiobiotin synt 45.8 17 0.00036 37.6 2.8 33 70-106 3-35 (223)
349 cd04130 Wrch_1 Wrch-1 subfamil 45.8 2.2E+02 0.0048 26.4 10.1 55 449-505 103-171 (173)
350 PRK03369 murD UDP-N-acetylmura 45.8 24 0.00051 39.6 4.2 32 69-107 117-148 (488)
351 PF00142 Fer4_NifH: 4Fe-4S iro 45.4 15 0.00033 39.2 2.4 104 436-554 159-266 (273)
352 cd01994 Alpha_ANH_like_IV This 45.4 78 0.0017 31.6 7.3 127 450-584 23-160 (194)
353 cd04113 Rab4 Rab4 subfamily. 45.3 55 0.0012 29.7 5.8 65 437-504 89-158 (161)
354 cd01884 EF_Tu EF-Tu subfamily. 45.1 51 0.0011 32.6 5.9 43 438-480 105-153 (195)
355 TIGR02012 tigrfam_recA protein 45.1 23 0.0005 38.3 3.8 68 31-105 10-86 (321)
356 PRK00454 engB GTP-binding prot 45.0 1.4E+02 0.0029 28.1 8.6 59 446-507 131-193 (196)
357 PF02562 PhoH: PhoH-like prote 44.9 24 0.00051 36.0 3.6 40 69-113 19-59 (205)
358 PRK13833 conjugal transfer pro 44.9 30 0.00065 37.5 4.6 41 69-113 144-184 (323)
359 CHL00200 trpA tryptophan synth 44.8 2.5E+02 0.0055 29.6 11.3 104 438-551 132-239 (263)
360 cd03114 ArgK-like The function 44.6 25 0.00054 33.3 3.6 31 81-112 7-37 (148)
361 PRK09354 recA recombinase A; P 44.6 24 0.00052 38.8 3.9 70 30-106 14-92 (349)
362 PF00910 RNA_helicase: RNA hel 44.5 15 0.00033 32.5 2.0 77 81-168 6-85 (107)
363 cd01888 eIF2_gamma eIF2-gamma 44.4 74 0.0016 31.1 6.9 66 440-508 126-199 (203)
364 cd03110 Fer4_NifH_child This p 44.3 58 0.0013 30.7 6.0 41 440-481 133-173 (179)
365 TIGR02729 Obg_CgtA Obg family 44.3 1.1E+02 0.0024 32.9 8.8 56 449-507 272-328 (329)
366 cd04123 Rab21 Rab21 subfamily. 44.0 1.4E+02 0.0031 26.5 8.2 58 445-505 100-159 (162)
367 cd02020 CMPK Cytidine monophos 43.8 13 0.00029 33.2 1.6 18 81-98 7-24 (147)
368 PHA02096 hypothetical protein 43.8 18 0.00039 32.7 2.3 36 426-461 39-76 (103)
369 cd04171 SelB SelB subfamily. 43.5 92 0.002 27.8 6.9 55 446-503 99-161 (164)
370 PF02219 MTHFR: Methylenetetra 43.4 16 0.00035 38.1 2.3 102 364-479 174-287 (287)
371 PRK00652 lpxK tetraacyldisacch 43.4 19 0.0004 39.0 2.8 38 70-110 50-87 (325)
372 PRK06526 transposase; Provisio 43.3 15 0.00032 38.2 1.9 72 30-106 54-130 (254)
373 KOG3022 Predicted ATPase, nucl 43.2 18 0.00039 39.0 2.6 48 71-122 49-99 (300)
374 COG4088 Predicted nucleotide k 43.1 21 0.00046 37.5 3.0 24 71-98 3-26 (261)
375 PRK04328 hypothetical protein; 43.1 33 0.00072 35.0 4.5 40 67-112 21-62 (249)
376 PF01202 SKI: Shikimate kinase 43.1 13 0.00029 35.0 1.5 16 83-98 2-17 (158)
377 cd01870 RhoA_like RhoA-like su 43.1 1.7E+02 0.0036 26.9 8.7 56 449-506 104-173 (175)
378 COG0455 flhG Antiactivator of 43.0 19 0.00041 37.8 2.7 121 364-536 114-240 (262)
379 PRK05986 cob(I)alamin adenolsy 43.0 23 0.0005 35.9 3.2 35 67-107 21-55 (191)
380 PRK14494 putative molybdopteri 42.9 27 0.00058 36.1 3.7 32 71-107 3-34 (229)
381 cd01673 dNK Deoxyribonucleosid 42.9 16 0.00034 35.0 2.0 32 71-113 1-32 (193)
382 TIGR01313 therm_gnt_kin carboh 42.8 13 0.00028 34.7 1.3 17 81-97 6-22 (163)
383 PF06745 KaiC: KaiC; InterPro 42.6 30 0.00065 34.1 3.9 42 67-113 17-60 (226)
384 TIGR01448 recD_rel helicase, p 42.6 27 0.00058 41.5 4.2 30 68-102 337-366 (720)
385 TIGR00313 cobQ cobyric acid sy 42.5 17 0.00038 40.9 2.5 29 77-106 3-31 (475)
386 PLN02881 tetrahydrofolylpolygl 42.5 1.4E+02 0.003 34.8 9.6 85 364-485 159-243 (530)
387 cd03271 ABC_UvrA_II The excisi 42.4 38 0.00083 35.4 4.8 33 67-103 19-52 (261)
388 cd04170 EF-G_bact Elongation f 42.2 52 0.0011 33.6 5.7 42 440-481 106-147 (268)
389 PRK03670 competence damage-ind 42.2 2.9E+02 0.0063 29.0 11.2 76 445-553 28-103 (252)
390 PF13173 AAA_14: AAA domain 42.1 25 0.00054 31.8 3.0 26 68-97 1-26 (128)
391 PRK06217 hypothetical protein; 41.9 17 0.00038 34.9 2.1 22 72-97 4-25 (183)
392 PRK09183 transposase/IS protei 41.9 34 0.00074 35.4 4.4 35 67-106 100-134 (259)
393 cd01868 Rab11_like Rab11-like. 41.6 76 0.0017 28.8 6.2 56 448-506 106-163 (165)
394 cd01864 Rab19 Rab19 subfamily. 41.5 1E+02 0.0023 28.1 7.1 66 438-505 96-163 (165)
395 TIGR02881 spore_V_K stage V sp 41.5 16 0.00035 37.2 1.9 26 72-102 45-70 (261)
396 PRK05506 bifunctional sulfate 41.4 25 0.00055 40.7 3.7 39 67-111 458-496 (632)
397 COG1348 NifH Nitrogenase subun 41.4 22 0.00048 37.8 2.8 103 438-555 162-268 (278)
398 PRK12736 elongation factor Tu; 41.4 1.2E+02 0.0025 33.4 8.5 42 439-480 116-163 (394)
399 TIGR00381 cdhD CO dehydrogenas 40.9 1.4E+02 0.0031 33.6 9.1 112 438-555 228-371 (389)
400 PRK13851 type IV secretion sys 40.8 22 0.00048 38.7 2.9 39 67-112 160-198 (344)
401 cd04144 Ras2 Ras2 subfamily. 40.7 1.4E+02 0.003 28.5 8.0 57 449-508 105-163 (190)
402 cd04157 Arl6 Arl6 subfamily. 40.6 84 0.0018 28.2 6.2 57 447-503 101-159 (162)
403 COG0467 RAD55 RecA-superfamily 40.5 33 0.00072 34.8 4.0 42 67-113 21-63 (260)
404 COG2909 MalT ATP-dependent tra 40.5 17 0.00036 44.2 2.1 35 57-95 25-59 (894)
405 COG2866 Predicted carboxypepti 40.5 16 0.00034 40.4 1.7 94 116-244 135-241 (374)
406 PF02492 cobW: CobW/HypB/UreG, 40.3 41 0.00088 32.4 4.4 35 71-111 2-36 (178)
407 TIGR03849 arch_ComA phosphosul 40.2 2.7E+02 0.0059 29.4 10.5 95 439-544 43-155 (237)
408 PRK01184 hypothetical protein; 40.1 21 0.00045 34.0 2.3 33 70-111 2-37 (184)
409 PRK07952 DNA replication prote 40.1 24 0.00052 36.6 2.9 31 71-106 101-131 (244)
410 cd01886 EF-G Elongation factor 40.1 59 0.0013 33.9 5.8 24 440-463 106-129 (270)
411 PRK00093 GTP-binding protein D 40.0 1.2E+02 0.0025 33.2 8.3 63 443-508 277-344 (435)
412 PF12774 AAA_6: Hydrolytic ATP 39.7 16 0.00034 37.6 1.5 31 80-114 39-69 (231)
413 PRK14737 gmk guanylate kinase; 39.7 28 0.00062 34.2 3.2 45 67-116 2-46 (186)
414 cd04120 Rab12 Rab12 subfamily. 39.7 1.3E+02 0.0028 29.9 7.8 56 449-507 104-162 (202)
415 KOG1144 Translation initiation 39.6 36 0.00079 41.3 4.5 55 376-460 548-602 (1064)
416 PF08303 tRNA_lig_kinase: tRNA 39.5 14 0.00029 37.0 1.0 17 81-97 7-23 (168)
417 PLN02772 guanylate kinase 39.5 25 0.00053 39.4 3.0 48 68-119 134-181 (398)
418 PF13481 AAA_25: AAA domain; P 39.4 31 0.00067 32.7 3.4 27 67-97 30-56 (193)
419 PRK05301 pyrroloquinoline quin 39.4 91 0.002 33.6 7.2 50 436-486 140-189 (378)
420 COG0552 FtsY Signal recognitio 39.4 44 0.00096 36.8 4.8 36 68-108 138-173 (340)
421 cd04732 HisA HisA. Phosphorib 39.2 1.4E+02 0.0029 29.7 7.9 94 447-546 117-222 (234)
422 cd01857 HSR1_MMR1 HSR1/MMR1. 39.2 85 0.0018 28.8 6.1 33 449-481 41-73 (141)
423 PRK01390 murD UDP-N-acetylmura 39.0 34 0.00073 37.7 4.0 32 68-106 113-144 (460)
424 TIGR02034 CysN sulfate adenyly 38.7 60 0.0013 35.7 5.8 25 439-463 121-146 (406)
425 COG2401 ABC-type ATPase fused 38.7 47 0.001 38.2 5.0 80 26-119 375-468 (593)
426 TIGR03822 AblA_like_2 lysine-2 38.7 97 0.0021 33.2 7.2 52 437-488 214-267 (321)
427 cd02911 arch_FMN Archeal FMN-b 38.6 2.6E+02 0.0057 28.7 10.0 67 439-509 61-137 (233)
428 cd03174 DRE_TIM_metallolyase D 38.4 4.2E+02 0.0091 26.5 11.7 106 435-543 113-222 (265)
429 cd06268 PBP1_ABC_transporter_L 38.3 3.7E+02 0.0081 25.9 11.5 120 441-565 81-221 (298)
430 cd01865 Rab3 Rab3 subfamily. 38.2 1.5E+02 0.0032 27.3 7.5 56 449-507 105-162 (165)
431 PRK00091 miaA tRNA delta(2)-is 38.2 25 0.00053 37.8 2.7 26 69-98 4-29 (307)
432 COG1072 CoaA Panthothenate kin 38.1 26 0.00057 37.6 2.9 35 81-139 90-124 (283)
433 PF02606 LpxK: Tetraacyldisacc 38.1 45 0.00098 36.0 4.7 67 68-148 34-100 (326)
434 PRK09435 membrane ATPase/prote 38.0 83 0.0018 34.3 6.7 114 29-156 19-144 (332)
435 cd01878 HflX HflX subfamily. 38.0 1.3E+02 0.0028 28.8 7.4 61 439-505 142-202 (204)
436 PRK12339 2-phosphoglycerate ki 37.8 25 0.00055 35.1 2.6 26 68-97 2-27 (197)
437 PRK04220 2-phosphoglycerate ki 37.8 27 0.00058 37.7 2.9 37 57-97 80-116 (301)
438 PF00931 NB-ARC: NB-ARC domain 37.7 34 0.00073 34.4 3.5 27 67-97 17-43 (287)
439 PRK08227 autoinducer 2 aldolas 37.7 2.6E+02 0.0057 29.8 10.1 98 435-543 125-226 (264)
440 TIGR00376 DNA helicase, putati 37.7 25 0.00055 41.2 2.9 34 70-108 174-207 (637)
441 COG3414 SgaB Phosphotransferas 37.7 11 0.00025 34.0 0.1 53 522-577 16-68 (93)
442 PRK10078 ribose 1,5-bisphospho 37.5 24 0.00052 34.0 2.3 24 69-96 2-25 (186)
443 TIGR03471 HpnJ hopanoid biosyn 37.5 59 0.0013 36.2 5.6 77 401-481 289-368 (472)
444 cd04133 Rop_like Rop subfamily 37.5 1.3E+02 0.0029 29.0 7.4 72 436-509 88-174 (176)
445 COG1082 IolE Sugar phosphate i 37.4 2.1E+02 0.0045 28.6 9.0 61 426-487 73-146 (274)
446 PF13401 AAA_22: AAA domain; P 37.3 29 0.00063 30.5 2.7 27 68-98 3-29 (131)
447 cd01895 EngA2 EngA2 subfamily. 37.3 1.3E+02 0.0029 26.8 6.9 59 444-505 107-172 (174)
448 TIGR00676 fadh2 5,10-methylene 37.3 5.1E+02 0.011 27.1 14.0 156 377-564 13-189 (272)
449 PRK04690 murD UDP-N-acetylmura 37.3 34 0.00073 38.2 3.7 31 69-106 115-145 (468)
450 CHL00198 accA acetyl-CoA carbo 37.2 1.7E+02 0.0038 32.1 8.9 81 395-496 112-207 (322)
451 PLN03127 Elongation factor Tu; 37.2 1.2E+02 0.0026 34.2 7.9 30 438-467 164-194 (447)
452 PRK08939 primosomal protein Dn 37.2 44 0.00096 35.7 4.4 72 30-106 107-188 (306)
453 PRK14493 putative bifunctional 37.2 38 0.00082 35.8 3.9 34 71-111 3-36 (274)
454 PRK13947 shikimate kinase; Pro 37.0 19 0.00042 33.6 1.5 23 72-98 4-26 (171)
455 PRK08118 topology modulation p 37.0 19 0.00041 34.7 1.5 23 72-98 4-26 (167)
456 PRK13361 molybdenum cofactor b 36.9 96 0.0021 33.0 6.9 56 436-492 139-195 (329)
457 PRK05537 bifunctional sulfate 36.8 34 0.00075 39.6 3.8 40 67-111 390-429 (568)
458 PRK12299 obgE GTPase CgtA; Rev 36.7 1.6E+02 0.0034 32.0 8.5 58 449-509 270-329 (335)
459 cd04118 Rab24 Rab24 subfamily. 36.7 1.4E+02 0.0029 28.3 7.2 69 436-507 89-165 (193)
460 PRK02705 murD UDP-N-acetylmura 36.7 40 0.00087 36.9 4.1 33 68-107 108-140 (459)
461 TIGR02880 cbbX_cfxQ probable R 36.5 23 0.00049 37.1 2.1 29 71-104 60-88 (284)
462 PLN03110 Rab GTPase; Provision 36.5 1E+02 0.0022 30.4 6.6 67 438-507 102-173 (216)
463 PRK08760 replicative DNA helic 36.2 1.5E+02 0.0033 33.7 8.6 42 59-104 218-260 (476)
464 PRK08762 molybdopterin biosynt 36.1 1.3E+02 0.0029 32.7 7.9 85 196-308 93-177 (376)
465 TIGR02782 TrbB_P P-type conjug 36.0 49 0.0011 35.1 4.5 40 68-112 131-171 (299)
466 COG1936 Predicted nucleotide k 36.0 21 0.00045 36.2 1.6 27 71-106 2-28 (180)
467 cd04129 Rho2 Rho2 subfamily. 36.0 1.6E+02 0.0034 28.1 7.5 56 450-507 105-172 (187)
468 TIGR02116 toxin_Txe_YoeB toxin 35.8 17 0.00037 31.0 0.9 53 542-594 1-62 (80)
469 TIGR01361 DAHP_synth_Bsub phos 35.8 1.4E+02 0.0031 31.3 7.8 96 442-540 124-226 (260)
470 PRK09302 circadian clock prote 35.8 49 0.0011 37.2 4.7 42 66-112 28-71 (509)
471 PRK00048 dihydrodipicolinate r 35.8 1.2E+02 0.0027 31.2 7.3 94 439-555 73-167 (257)
472 PRK05506 bifunctional sulfate 35.7 64 0.0014 37.6 5.7 42 439-480 145-193 (632)
473 cd01020 TroA_b Metal binding p 35.7 2.6E+02 0.0057 28.8 9.6 35 422-456 123-159 (264)
474 TIGR03680 eif2g_arch translati 35.7 1.2E+02 0.0026 33.4 7.5 68 438-508 121-196 (406)
475 TIGR01360 aden_kin_iso1 adenyl 35.7 33 0.00071 32.2 2.9 25 69-97 3-27 (188)
476 smart00729 Elp3 Elongator prot 35.6 1.5E+02 0.0033 27.4 7.2 64 437-500 136-201 (216)
477 COG1224 TIP49 DNA helicase TIP 35.5 33 0.00071 38.6 3.1 28 67-98 63-90 (450)
478 PRK03806 murD UDP-N-acetylmura 35.4 43 0.00093 36.6 4.1 104 426-557 321-427 (438)
479 cd02019 NK Nucleoside/nucleoti 35.3 24 0.00051 29.1 1.6 17 81-97 7-23 (69)
480 cd04125 RabA_like RabA-like su 35.2 1.7E+02 0.0037 27.6 7.6 69 436-507 88-165 (188)
481 PRK14489 putative bifunctional 35.2 43 0.00092 36.4 4.0 36 70-111 206-241 (366)
482 cd02810 DHOD_DHPD_FMN Dihydroo 35.2 5.2E+02 0.011 26.6 14.9 44 435-481 81-126 (289)
483 cd01121 Sms Sms (bacterial rad 35.2 54 0.0012 36.1 4.8 36 67-107 80-115 (372)
484 cd01874 Cdc42 Cdc42 subfamily. 35.1 1.6E+02 0.0034 28.0 7.4 54 450-505 105-172 (175)
485 PRK13900 type IV secretion sys 35.1 36 0.00079 36.8 3.4 37 68-111 159-195 (332)
486 COG0572 Udk Uridine kinase [Nu 35.1 28 0.0006 36.1 2.4 26 69-98 8-33 (218)
487 PRK00141 murD UDP-N-acetylmura 35.1 38 0.00082 37.8 3.7 31 69-106 121-151 (473)
488 TIGR00053 addiction module tox 35.1 20 0.00044 30.8 1.2 54 539-592 3-66 (89)
489 COG2313 IndA Uncharacterized e 35.0 1.9E+02 0.0041 31.3 8.4 104 345-480 107-226 (310)
490 PRK06995 flhF flagellar biosyn 35.0 33 0.00071 39.3 3.2 32 68-103 255-286 (484)
491 PHA02530 pseT polynucleotide k 34.9 27 0.00057 35.8 2.3 24 70-97 3-26 (300)
492 cd02040 NifH NifH gene encodes 34.9 4.8E+02 0.01 26.1 14.0 27 81-108 9-35 (270)
493 PF01695 IstB_IS21: IstB-like 34.8 29 0.00063 33.9 2.4 34 68-106 46-79 (178)
494 PRK08318 dihydropyrimidine deh 34.6 6.7E+02 0.014 27.7 13.7 101 435-542 82-199 (420)
495 COG0703 AroK Shikimate kinase 34.6 21 0.00046 35.6 1.5 24 70-98 4-27 (172)
496 cd01832 SGNH_hydrolase_like_1 34.6 2.2E+02 0.0047 26.5 8.1 33 426-462 84-116 (185)
497 PRK12337 2-phosphoglycerate ki 34.5 28 0.00062 39.8 2.6 28 67-98 253-280 (475)
498 PF13671 AAA_33: AAA domain; P 34.5 21 0.00046 32.0 1.3 23 71-97 1-23 (143)
499 PRK00049 elongation factor Tu; 34.4 1.9E+02 0.004 31.9 8.7 69 438-507 115-202 (396)
500 PRK05973 replicative DNA helic 34.1 53 0.0012 34.1 4.3 41 67-112 62-103 (237)
No 1
>PLN02759 Formate--tetrahydrofolate ligase
Probab=100.00 E-value=6.7e-291 Score=2321.92 Aligned_cols=633 Identities=87% Similarity=1.339 Sum_probs=622.5
Q ss_pred CCCccCcccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCC
Q 006673 4 SKTVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLG 83 (636)
Q Consensus 4 ~~~~~~~~~~~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~G 83 (636)
|+...+++++.||||||||||+++++||++||+++||.+|+||+||+|||||+++++++++++|+|||||||||||||+|
T Consensus 4 ~~~~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKi~l~~l~~~~~~~~gklIlVTaitPTP~G 83 (637)
T PLN02759 4 SSSRRKLEVKSPVPADIDIAQSVEPLHISEIAKALGLLPDEYDLYGKYKAKVLLSVRDRLAGAPDGYYVVVAGITPTPLG 83 (637)
T ss_pred cCCCCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCChhhhccCCCcceEEcHHHHhhhccCCCCcEEEEEecCCCCCC
Confidence 33445577899999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred CCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhh
Q 006673 84 EGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTR 163 (636)
Q Consensus 84 EGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~ 163 (636)
||||||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+||||
T Consensus 84 EGKTTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~ 163 (637)
T PLN02759 84 EGKSTTTIGLCQALGAYLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMEEFNLHLTGDIHAITAANNLLAAAIDTR 163 (637)
T ss_pred CCchhHHHHHHHHHHHHhCCeeEEEeecCCcCCcCCcccccCCCcccccccHhhhcccccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999656999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccc
Q 006673 164 IFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLR 243 (636)
Q Consensus 164 i~~~n~~~~~~~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR 243 (636)
|||||+|+|++||+||||..++|||+|++.|+|||+||||+|+|||+||+|||++|++|+|||++|+|+||||||||+||
T Consensus 164 i~~~n~~~~~~l~~~l~p~~~~~~r~~~~~~~~rl~~l~i~~~~p~~lt~~e~~~~~~L~IDp~~I~w~RvlD~NDR~LR 243 (637)
T PLN02759 164 VFHEATQSDKALFNRLCPANKEGKRSFAAVMFRRLKKLGISKTDPDELTPEERKKFARLDIDPASITWRRVMDVNDRFLR 243 (637)
T ss_pred HhhccccchhhhhhccccccccccccccHHHHHHHHhhccCcCCccccCHHHhhhhhccCcCcceeEEEeeccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcC
Q 006673 244 KITIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPT 323 (636)
Q Consensus 244 ~I~iGlg~~~~G~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPN 323 (636)
+|+||+|+++||++||+|||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||
T Consensus 244 ~I~vGlgg~~~G~~Re~gFdITvASEiMAILcLa~dl~Dlk~Rlg~ivvg~~~~g~pVta~DL~~~GAmt~LLkDAikPN 323 (637)
T PLN02759 244 KITVGQGPEEKGMTRETGFDITVASEIMAVLALTTSLADMRERLGKMVIGNSKAGEPVTADDLGVGGALTVLMKDAIHPT 323 (637)
T ss_pred ceeeCcCCCCCCCcccCCceeeHHHHHHHHHHHcCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHhHHHHHHhhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCceeEEcccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeeh
Q 006673 324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIR 403 (636)
Q Consensus 324 LvQTlEgtPa~VHgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvR 403 (636)
||||+|||||||||||||||||||||||||++||||+|++||||||||||||||||||||||||.+|++|||+|||||||
T Consensus 324 LvQTlEgtPa~vHgGPFANIAhG~nSviAtk~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~~gl~P~a~VlVaTvR 403 (637)
T PLN02759 324 LMQTLEGTPVLVHAGPFANIAHGNSSIVADQIALKLVGPGGFVVTEAGFGADIGTEKFMNIKCRYSGLKPQCAVIVATVR 403 (637)
T ss_pred ceeecCCCceEEecCCcccccccchHHHHHHHHHhhcCCCCeEEEecccCCCCchhheecccccccCCCCCEEEEEeehH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeE
Q 006673 404 ALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDA 483 (636)
Q Consensus 404 ALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~ 483 (636)
|||||||+++..+|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+++|+.++
T Consensus 404 ALK~hGG~~~~~pg~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~v~~~~~~~ga~~~ 483 (637)
T PLN02759 404 ALKMHGGGPAVVAGKPLDHAYTTENVELVEAGCVNLARHIENTKSYGVNVVVAINMFATDTEAELEAVRQAALAAGAFDA 483 (637)
T ss_pred HHHhcCCCCcccCCccchhhhcccCHHHHHhhhhhHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999996459
Q ss_pred EEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCC
Q 006673 484 VVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLP 562 (636)
Q Consensus 484 avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LP 562 (636)
++|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++||
T Consensus 484 ~~~~~wa~GGeGa~eLA~~Vv~a~e~~~s~fk~LYd~~~sI~eKIetIAkeIYGAd~VefS~~AkkqLk~ie~lGfg~LP 563 (637)
T PLN02759 484 VLCTHHAHGGKGAVDLGEAVQKACEGNSQPFKFLYPLDISIKEKIEAIAKESYGADGVEYSEQAEAQIEMYTRQGFSNLP 563 (637)
T ss_pred EEechhhcccHHHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999986567899999999999999999999 99999999999999999999999999999
Q ss_pred eeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 563 ICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 563 VCmAKTqySlSdDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
||||||||||||||+++|+|+||+||||||++|+||||||++||+|||||||||+|||++||||+++|+|+|||
T Consensus 564 VCmAKTqyS~S~dp~l~G~P~gf~~~ir~~~~~~GAGFiv~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~ 637 (637)
T PLN02759 564 ICMAKTQYSFSHDASLKGAPSGFTLPIRDVRASVGAGFIYPLVGTMSTMPGLPTRPCFYDIDIDTETGKVLGLS 637 (637)
T ss_pred eeEecCCCCcCCChhhhCCCCCcEEEeeEEEEcCCCCEEEEecCccccCCCCCCCCcccccccccCCCEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=100.00 E-value=2.4e-285 Score=2275.17 Aligned_cols=618 Identities=65% Similarity=1.038 Sum_probs=606.7
Q ss_pred ccCcccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCc
Q 006673 7 VRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGK 86 (636)
Q Consensus 7 ~~~~~~~~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGK 86 (636)
-.++.++.||||||||||+++++||++||+++||++|||||||+|||||++++++|++++|+|||||||||||||+||||
T Consensus 6 ~~~~~~~~~~~sDieIa~~~~~~~I~~iA~~lgl~~~~le~YG~ykAKv~l~~~~~~~~~~~gklIlVTaitPTP~GEGK 85 (625)
T PTZ00386 6 TRKLSCQWPVPSDIDIAQSVKPQPITSVAESAGILLSELDPYGSTRAKVKLSVLKRLENSPNGKYVVVAGMNPTPLGEGK 85 (625)
T ss_pred CCCCCCCCCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHhcCCcceecCHHHHHhhccCCCCcEEEEeecCCCCCCCCc
Confidence 34578899999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred chhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhc
Q 006673 87 STTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH 166 (636)
Q Consensus 87 tTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~ 166 (636)
|||||||+|||++|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||
T Consensus 86 tTttIGL~~aL~~~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~HAItaA~NLlaA~iDn~i~~ 165 (625)
T PTZ00386 86 STTTIGLAQSLGAHLHRKTFACIRQPSQGPTFGIKGGAAGGGYSQVIPMEDFNLHGTGDIHAITAANNLLAAALDTRIFH 165 (625)
T ss_pred cchhhhhHHHHHHHhCcceEEEEecCCcCCcCCcccccCCCccccccchhhccccccchHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999559999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceee
Q 006673 167 EASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKIT 246 (636)
Q Consensus 167 ~n~~~~~~~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~ 246 (636)
||+|+|++||+||| +|+|+|+++|++||+||||.|+||++||+||+++|++|+|||++|+|+||||||||+||+|+
T Consensus 166 ~n~~~d~~l~~~l~----~~~r~~~~~~~~rl~~lgi~~~~p~~lt~ee~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~ 241 (625)
T PTZ00386 166 ERTQSDAALYRRLT----DELKKFTPIMLKRLEKLGISKTDPKQLTEEERVRFARLDIDPDTISWRRVTDVNDRMLREIT 241 (625)
T ss_pred ccccchhHHHhhhc----cccccccHHHHHHHHhhccCcCCccccCHHHhhhhhhcCcCcceeEEEeeccccchhhhcee
Confidence 99999999999999 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCcee
Q 006673 247 IGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQ 326 (636)
Q Consensus 247 iGlg~~~~G~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQ 326 (636)
||+|++++|++||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+||||||||||||
T Consensus 242 vGlG~~~~G~~Re~gFdITvASEiMAIl~La~dl~Dlr~Rlg~ivva~~~~g~pVta~DL~~~GAmt~LLkDAikPNLvQ 321 (625)
T PTZ00386 242 IGQGKEEKGITRKTGFDISVASEVMAILALATDLADMRQRLGAIVVAKSKSGEPVTAEDLGCAGAMTVLMKDTIEPTLMQ 321 (625)
T ss_pred eCcCCCCCCCcccCCceeEHHHHHHHHHHHhCCHHHHHHHHhceeeeecCCCCceeHHHcCchHHHHHHHHhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCceeEEcccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhh
Q 006673 327 TLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK 406 (636)
Q Consensus 327 TlEgtPa~VHgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK 406 (636)
|+|||||||||||||||||||||||||++||||+|.+||||||||||||||||||||||||.+|++||||||||||||||
T Consensus 322 TlEgtPa~VHgGPFANIAhG~nSviAt~~ALkla~~~dyvVTEAGFGaDlGaEKF~dIkcR~sgl~P~a~VlVaTvRALK 401 (625)
T PTZ00386 322 TLEGTPVLVHAGPFGNIAHGNSSIVADQIALKLAGQDGFVLTEAGFGADIGCEKFFNIKCRTSGLKPDAAVLVATVRALK 401 (625)
T ss_pred ecCCCceEEecCCcchhhcccHHHHHHHHHHHhCCCCCeEEEeccccCCCCchhhccccccccCCCcCEEEEEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHH-HcCCCeEEE
Q 006673 407 MHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM-AAGAFDAVV 485 (636)
Q Consensus 407 ~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~-~~Gv~~~av 485 (636)
||||+++. ++.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|+ ++|+.++++
T Consensus 402 ~hGG~~~~--------~l~~enl~al~~G~~NL~~Hien~~~fgvpvVVAIN~F~tDT~~Ei~~i~~~~~~~~ga~~~~~ 473 (625)
T PTZ00386 402 FHGGVEPV--------VAGKENLEAVRKGLSNLQRHIQNIRKFGVPVVVALNKFSTDTDAELELVKELALQEGGAADVVV 473 (625)
T ss_pred HhCCCCcc--------ccCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHhcCCccEEE
Confidence 99999874 466899999999999999999999999999999999999999999999999999 999545999
Q ss_pred cCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCee
Q 006673 486 CSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPIC 564 (636)
Q Consensus 486 s~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVC 564 (636)
|+||++||+|++|||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++||||
T Consensus 474 s~~~a~GG~Ga~eLA~~Vv~a~~~~~s~fk~LYd~~~sI~eKIetIAkeIYGA~gVefS~~AkkqLk~ie~~G~~~LPVC 553 (625)
T PTZ00386 474 TDHWAKGGAGAVDLAQALIRVTENVPSNFKLLYPLDASLKEKIETICKEIYGAAGVEYLNDADEKLEDFERMGYGKFPVC 553 (625)
T ss_pred echhhccchhHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHccCCCcEEECHHHHHHHHHHHHcCCCCCCeE
Confidence 999999999999999999999986568899999999999999999999 9999999999999999999999999999999
Q ss_pred EeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 565 MAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 565 mAKTqySlSdDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
||||||||||||+++|+|+||+|||||||+|+||||||++||+|||||||||+|||++||||+++|+|+|||
T Consensus 554 mAKTqyS~S~dp~l~G~P~gf~l~irdv~~~aGAGFiv~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~ 625 (625)
T PTZ00386 554 MAKTQYSFSHDPELRGAPTGFTVPIRDVRVNCGAGFVFPLLGDISTMPGLPTRPAFYNIDIDCETGKIVGLS 625 (625)
T ss_pred EeccCCCcCCChhhcCCCCCCEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCCceeccccCCCCEEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 3
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=4.9e-273 Score=2171.27 Aligned_cols=581 Identities=52% Similarity=0.831 Sum_probs=570.9
Q ss_pred ccCCCCCChHHHHccCC--CCCHHHHHHHcCCCCcccccccCeeeeeccc-hhhhccCCCCCcEEEEeecCCCCCCCCcc
Q 006673 11 QVVSPVPADIDIANSVE--PLHISEIAQELNLKPNHYDLYGKYKAKVLLS-VLDELEGSADGYYVVVGGITPTPLGEGKS 87 (636)
Q Consensus 11 ~~~~~m~sd~eia~~~~--~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~-~~~~~~~~~~gklilVTaitPTP~GEGKt 87 (636)
+++.|+||||||||+++ ++||++||+++||++|||||||+|||||+++ ++++++++|+|||||||||||||+|||||
T Consensus 2 ~~~~~~~sdieIa~~~~~~~~~I~~ia~~lgl~~~~le~YG~~kAKi~l~~~l~~~~~~~~gklIlVTaitPTP~GEGKt 81 (587)
T PRK13507 2 ALDPTKMKDWEIAEEAEKFMKPVEELAEELGLTKEELLPYGHYIAKVDFRKVLDRLKDRPDGKYIDVTAITPTPLGEGKS 81 (587)
T ss_pred CCCCCCCCHHHHHHhhhccCCCHHHHHHHcCCCHHHHHhcCCcceeecHHHHHHhhccCCCCeEEEEeccCCCCCCCCcc
Confidence 35679999999999999 8899999999999999999999999999998 89999888999999999999999999999
Q ss_pred hhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhcc
Q 006673 88 TTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHE 167 (636)
Q Consensus 88 TttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~ 167 (636)
||||||+|||+ ++||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||+
T Consensus 82 TttIGL~~aL~-~lgk~~~~~lRePSlGP~FGiKGGAaGGGysQv~Pme~iNLHfTGD~hAitaA~NLlaA~idn~i~~~ 160 (587)
T PRK13507 82 TTTMGLVQGLG-KRGKKVSGAIRQPSGGPTMNIKGSAAGGGLSQCIPLTPFSLGLTGDINAIMNAHNLAMVALTARMQHE 160 (587)
T ss_pred chhhhHHHHHH-hhcCceEEEEecCCcCCcCCcccccCCCccccccchhhccccccChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999995 89999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeee
Q 006673 168 ASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITI 247 (636)
Q Consensus 168 n~~~~~~~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~i 247 (636)
|+|+|++|+.| .|++|+|||++|+|+||||||||+||+|+|
T Consensus 161 n~~~~~~l~~~---------------------------------------~~~~L~IDp~~I~w~RvlD~NDR~LR~I~v 201 (587)
T PRK13507 161 RNYTDEQLARR---------------------------------------GLKRLDIDPTRVEMGWIIDFCAQALRNIII 201 (587)
T ss_pred Cccccchhhcc---------------------------------------cccccCCCcceeeEeecccccchhhhceee
Confidence 99999998754 366999999999999999999999999999
Q ss_pred ccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceee
Q 006673 248 GQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQT 327 (636)
Q Consensus 248 Glg~~~~G~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQT 327 (636)
|+|++.||+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||
T Consensus 202 GlG~~~~G~~Re~gFdITvASEiMAIlcLa~~l~Dlk~Rlg~ivva~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQT 281 (587)
T PRK13507 202 GIGGKTDGYMMQSGFGIAVSSEVMAILSVATDLKDLRERIGKIVVAYDKNGKPVTTADLEVDGAMTAWMVRAINPNLLQT 281 (587)
T ss_pred CcCCCCCCccccCCceeeHHHHHHHHHHHcCCHHHHHHHHhcEEEEEcCCCCeeeHHhccchHhHHHHHHhhcCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCceeEEcccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhh
Q 006673 328 LEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKM 407 (636)
Q Consensus 328 lEgtPa~VHgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~ 407 (636)
+||||||||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++|||+|||||||||||
T Consensus 282 lEgtPa~vHgGPFANIAHG~nSviAt~~ALkla---dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~ 358 (587)
T PRK13507 282 IEGQPVFVHAGPFANIAIGQSSIIADRVGLKLA---DYHVTESGFGADIGFEKFWNLKCRLSGLKPDCAVIVATIRALKM 358 (587)
T ss_pred cCCCceEEecCCcchhhcccHHHHHHHHHHhcC---CeEEeccccCCCCChhheeeeeccccCCCCCEEEEEeEhHHHHH
Confidence 999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred cCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcC
Q 006673 408 HGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (636)
Q Consensus 408 HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~ 487 (636)
|||+++..+|+|||++|.+||+++|++||+||.|||+|+++||+|||||||+|++||++||++|+++|++.|++ +++|+
T Consensus 359 hgG~~~~~~g~~l~~~l~~enl~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~l~~~~~~~g~~-~~v~~ 437 (587)
T PRK13507 359 HGGGPKVVPGKPLPEEYTKENVGLVEKGCANLLHHIGTVKKSGINPVVCINAFYTDTHAEIAIVRRLAEQAGAR-VAVSR 437 (587)
T ss_pred cCCCCccccCCccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCCCCCHHHHHHHHHHHHHcCCC-EEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999996 89999
Q ss_pred ccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCC-CCCCCeeE
Q 006673 488 HHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQG-FSGLPICM 565 (636)
Q Consensus 488 ~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG-~~~LPVCm 565 (636)
||++||+|++|||++|+++|++ +++|+|||++++||+|||++||+ ||||++|+||++|++||++||++| |++|||||
T Consensus 438 ~wa~GGeGa~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~EKIetIAkeIYGAdgVe~S~~A~kqLk~le~~gGfg~LPVCm 516 (587)
T PRK13507 438 HWEKGGEGALELADAVIDACNE-PNDFKFLYPLEMPLRERIETIAREVYGADGVSYTPEAEAKLKRLESDPETADFGTCM 516 (587)
T ss_pred hhhccchhHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHhcCCCCCCCEEE
Confidence 9999999999999999999985 57899999999999999999999 999999999999999999999996 99999999
Q ss_pred eecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 566 AKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 566 AKTqySlSdDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
|||||||||||+++|+|+||+|||||||+|+||||||++||+|||||||||+|+|++||||+++|+|+|||
T Consensus 517 AKTqyS~S~d~~~~g~P~gf~~~ir~v~~~~GAGFiv~l~G~i~tMPGLp~~Paa~~idid~~~G~i~GL~ 587 (587)
T PRK13507 517 VKTHLSLSHDPALKGVPKGWTLPIRDILTYGGAGFVVPVAGDISLMPGTGSDPAFRRIDVDTQTGKVKGLF 587 (587)
T ss_pred EecCcCcCCCccccCCCCCcEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCccccccccCCCCEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998
No 4
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=100.00 E-value=4.6e-270 Score=2152.67 Aligned_cols=555 Identities=58% Similarity=0.935 Sum_probs=462.4
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 16 m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
|||||||||+++++||++||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|
T Consensus 1 m~sd~~ia~~~~~~~i~~ia~~~gl~~~~~~~yG~~kaKi~~~~~~~~~~~~~gklilVTaitPTp~GEGKtTttiGL~~ 80 (557)
T PF01268_consen 1 MKSDIEIAQSAKLKPIEEIAEKLGLPEDDLEPYGRYKAKIDLSVLERLKDKPDGKLILVTAITPTPAGEGKTTTTIGLAQ 80 (557)
T ss_dssp --GGSTTTCTT----HHHHHHCTT--GGGEEEETTTEEEE-TCHHHHTTTS---EEEEEEESS--TTS-SHHHHHHHHHH
T ss_pred CCCHHHHHhcCCCCCHHHHHHHcCCCHHHHHhcCCCCcEeChHHHhhccccCCCcEEEEEecCCCCCCCCceeHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 006673 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (636)
Q Consensus 96 aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~ 175 (636)
|| +|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 al-~~lg~~~~~~lRePSlGP~fG~KGGAaGGG~sqv~Pme~iNLhfTGD~hAIt~A~NLlaA~idn~i~~gn------- 152 (557)
T PF01268_consen 81 AL-NRLGKKAIAALREPSLGPVFGIKGGAAGGGYSQVVPMEDINLHFTGDFHAITAANNLLAAMIDNHIYHGN------- 152 (557)
T ss_dssp HH-HHTT--EEEEE----CHHHHCST-STTCETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HH-HhcCCceEEEEecCCCCCccCccccccCCceeEEechHHeeccccCcHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 99 6999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCCC
Q 006673 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (636)
Q Consensus 176 ~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G 255 (636)
+|+|||++|+|+||||||||+||+|+||+|++.||
T Consensus 153 ---------------------------------------------~l~iDp~~I~w~Rv~D~NDR~LR~i~iglg~~~~G 187 (557)
T PF01268_consen 153 ---------------------------------------------ELNIDPRRITWKRVLDMNDRALRNIVIGLGGKANG 187 (557)
T ss_dssp ---------------------------------------------TT-EECCCE---EEESS--GGGSSEEESTSSCCC-
T ss_pred ---------------------------------------------cCCCCcceeeeeeeccccchhhhheeeCCCCCCCC
Confidence 69999999999999999999999999999999999
Q ss_pred cceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCceeEE
Q 006673 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (636)
Q Consensus 256 ~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa~V 335 (636)
+|||+|||||||||||||||||+|++|||+||||||||||+||+|||++||+++||||+|||||||||||||+|||||||
T Consensus 188 ~~r~~~FdIT~ASEiMAilcLa~~l~Dlk~Rl~~ivv~~~~~~~pvta~dl~~~Gam~~LLkdAikPNLvQTlEgtPa~v 267 (557)
T PF01268_consen 188 VPREDGFDITVASEIMAILCLATDLEDLKERLGRIVVAYTKDGKPVTAEDLGAAGAMTALLKDAIKPNLVQTLEGTPAFV 267 (557)
T ss_dssp --EEE-EEEGGGSHHHHHHHC-SSHHHHHHHHHC-EEEEETTS-EEECHHHT-HHHHHHHTTTTTS-EEEEETTS-EEEE
T ss_pred CcccCceeeEechhhheehhhhcCHHHHHHHHhCEEEEEcCCCCeEEHHHcCCcHhHHHHHHhhcCchhhhhcccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCcc
Q 006673 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (636)
Q Consensus 336 HgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~ 415 (636)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+.+
T Consensus 268 HgGPFANIAhG~nSviAt~~al~l~---dyvvTEAGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvRALK~HGG~~~-- 342 (557)
T PF01268_consen 268 HGGPFANIAHGCNSVIATKMALKLA---DYVVTEAGFGADLGAEKFFDIKCRKSGLKPDAVVLVATVRALKMHGGVAK-- 342 (557)
T ss_dssp -----SSSS--B--HHHHHHHHHHS---SEEEEEBSSSTTTHHHHHHHTHHHHHT---SEEEEEEEHHHHHHHTT--G--
T ss_pred eccccccccccCchHHHHHHHHhhc---ceeecccccccccChhhhcCccchhcccCcceEEEeeechHHHhhcCCCc--
Confidence 9999999999999999999999999 99999999999999999999999999999999999999999999999976
Q ss_pred CCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 006673 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (636)
Q Consensus 416 ~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeG 495 (636)
++|.+||++||++||+||+|||+|+|+||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|
T Consensus 343 ------~~l~~eNl~al~~G~~NL~rHIeNik~fGvpvVVAIN~F~tDT~aEi~~I~~~~~~~Gv~-~avs~~wa~GGeG 415 (557)
T PF01268_consen 343 ------DDLNEENLEALEKGFANLERHIENIKKFGVPVVVAINRFPTDTDAEIELIRELCEELGVR-AAVSEHWAKGGEG 415 (557)
T ss_dssp ------GGTTS--HHHHHHHHHHHHHHHHHHHCTT--EEEEEE--TTS-HHHHHHHHHHCCCCCEE-EEEC-HHHHGGGG
T ss_pred ------cccCccCHHHHHHHHHHHHHHHHHHHhcCCCeEEEecCCCCCCHHHHHHHHHHHHhCCCC-EEEechhhccccc
Confidence 678999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred hhHHHHHHHHHh-hcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCC
Q 006673 496 AVDLGIAVQRAC-ENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFS 573 (636)
Q Consensus 496 a~eLA~aVv~a~-e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlS 573 (636)
++|||++|+++| ++++++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++|||||||||||||
T Consensus 416 a~eLA~~Vv~a~ee~~~~~fk~LY~l~~sI~eKIe~IA~eIYGA~~V~~S~~A~kqLk~~e~~Gf~~LPVCmAKTqySlS 495 (557)
T PF01268_consen 416 AVELAEAVVEACEEEEPSNFKPLYDLEDSIEEKIETIATEIYGADGVEYSPKAKKQLKKIEKLGFGNLPVCMAKTQYSLS 495 (557)
T ss_dssp CHHHHHHHHHH-HHHS------SS-TTS-HHHHHHHHHHHTT--SEEEE-HHHHHHHHHHHHCTTTTS-EEEES-SSSSS
T ss_pred HHHHHHHHHHHhhccCCCCcCcccCCcccHHHHHHHHHhhhcCCCcceeCHHHHHHHHHHHhcCCCcCceEEecCCCCcc
Confidence 999999999999 55578899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 574 HNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 574 dDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
|||+++|+|+||+||||||++|+|||||||+||+|||||||||+|||++|||| ++|+|+|||
T Consensus 496 dDp~l~G~P~~f~i~Vrdv~~saGAGFvv~l~G~I~tMPGLpk~Paa~~idid-~~G~I~GLf 557 (557)
T PF01268_consen 496 DDPKLKGAPTGFTIPVRDVRISAGAGFVVALTGDIMTMPGLPKRPAAENIDID-EDGNIVGLF 557 (557)
T ss_dssp SSTT--SS--S-EEEE-EEEEETTTCEEEECSSTTTSS----SS-GGGC-EEC-TTTEECS--
T ss_pred CCCcccCCCCCcEEEEeEEEEcCCCcEEEEEeccccccCCCCCCccceeCCCC-CCCCEecCC
Confidence 99999999999999999999999999999999999999999999999999999 999999998
No 5
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-265 Score=2065.43 Aligned_cols=553 Identities=56% Similarity=0.909 Sum_probs=548.4
Q ss_pred ChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 18 ADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 18 sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|||||||+++++||++||+++||..||||+||+||||||++++++++.+++|||||||||||||+|||||||||||+|||
T Consensus 1 sDieIa~~~~~k~I~~ia~k~Gl~~d~lelYG~ykAKi~~~~~~~l~~k~~gKlILVTaitPTPaGEGKsTttiGL~~al 80 (554)
T COG2759 1 SDIEIARAATMKPIEEIAEKLGLSADDLELYGHYKAKISLEVIKRLKNKPDGKLILVTAITPTPAGEGKTTTTIGLVDAL 80 (554)
T ss_pred ChhhhhhhcccccHHHHHHHcCCCHHHhhhccchhhhcCHHHHHhhccCCCceEEEEEecCCCCCCCCcceeeehHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChhHhhh
Q 006673 98 GAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFN 177 (636)
Q Consensus 98 ~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~ 177 (636)
+|+||++++|||||||||||||||||||||||||+|||||||||||||||||||||||+|+|||||||||
T Consensus 81 -~~lgK~~i~alRePSlGP~fGiKGGAaGGGyaqv~PmediNLHfTGD~HAItaAnNllsA~Idnhi~~gn--------- 150 (554)
T COG2759 81 -NKLGKKAIIALREPSLGPVFGIKGGAAGGGYAQVLPMEDINLHFTGDFHAITAANNLLSAAIDNHIYHGN--------- 150 (554)
T ss_pred -HhcCchheEEeccCCcCCccccccccCCCceeeeeehhhccccccCchhHHHHHHHHHHHHHHhhhhcCc---------
Confidence 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCCCcc
Q 006673 178 RLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMV 257 (636)
Q Consensus 178 ~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~ 257 (636)
+|+|||+||+||||||||||+||+|++|+|++.||+|
T Consensus 151 -------------------------------------------~l~ID~~rI~wkRv~DmNDRaLR~I~vglg~~~~G~~ 187 (554)
T COG2759 151 -------------------------------------------ELGIDPRRITWKRVVDMNDRALRSIVVGLGGPENGVP 187 (554)
T ss_pred -------------------------------------------ccCcCcceEEEEeeeccchhhhhheeeccCCccCCcc
Confidence 7999999999999999999999999999999999999
Q ss_pred eecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCceeEEcc
Q 006673 258 RETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHA 337 (636)
Q Consensus 258 r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa~VHg 337 (636)
||||||||||||+|||||||+|+.|||+|||||||||++||+|||++||+++||||+|||||||||||||+|||||||||
T Consensus 188 RedgFdITvASEiMAIlcLa~dlkDlk~Rl~~iviay~~~~~PV~~~Dl~~~GAma~lLkDAikPNLvQTlEgtPa~VHg 267 (554)
T COG2759 188 REDGFDITVASEIMAILCLATDLKDLKERLGRIVIAYDYDGKPVTAGDLKVEGAMAALLKDAIKPNLVQTLEGTPAFVHG 267 (554)
T ss_pred cCCCceeehHHHHHHHHHHhhhHHHHHHHHhheEEEEecCCCceeeeccccchHHHHHHHhhccccceeecCCCceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCC
Q 006673 338 GPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAG 417 (636)
Q Consensus 338 GPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g 417 (636)
||||||||||||||||++||||+ ||||||||||||||||||||||||.+|++||||||||||||||||||+++
T Consensus 268 GPFANIAhGcnSiiAt~~AlkL~---dy~VTEAGFgaDlGaEKF~dIK~r~~gl~PdavVlVATvRALK~hGG~~~---- 340 (554)
T COG2759 268 GPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFFDIKCRSSGLKPDAVVLVATVRALKMHGGVPK---- 340 (554)
T ss_pred CccchhhccchhHHHHHHHHhhc---CeEEEecccccccchhhhcceeccccCCCCCeEEEeeehHHHHHcCCCCh----
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999985
Q ss_pred CCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchh
Q 006673 418 KPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (636)
Q Consensus 418 ~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~ 497 (636)
++|.+||+|+|++||+||.|||+|+|+||+|||||||+|++||++||+.|+++|++.|++ +++|+||++||+|++
T Consensus 341 ----~~l~~Env~avk~G~aNL~~Hi~Nikkfgvp~VVAIN~F~tDt~~Ei~~i~~~~~~~gv~-~~ls~vwakGg~Gg~ 415 (554)
T COG2759 341 ----EDLTEENVDAVKKGFANLLKHIENIKKFGVPVVVAINKFPTDTEAEIAAIEKLCEEHGVE-VALSEVWAKGGEGGI 415 (554)
T ss_pred ----HHhcchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccCCCCCHHHHHHHHHHHHHcCCc-eeehhhhhccCccHH
Confidence 789999999999999999999999999999999999999999999999999999999997 999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCCCCC
Q 006673 498 DLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNA 576 (636)
Q Consensus 498 eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlSdDp 576 (636)
|||++|++++++++++|++|||.++||++||++||+ ||||++|+||++|++||+++|++||++||||||||||||||||
T Consensus 416 eLA~kVv~~~~~~~~~f~~lYd~~~~i~~Ki~~I~~~iYga~~v~~s~~A~~ql~~~~~~g~d~lPiCmAKTqYS~Sddp 495 (554)
T COG2759 416 ELAKKVVEAIEQNDSEFKRLYDVEDPIEEKIEKIAKEIYGADGVEFSPKAKEQLKTFEKQGFDNLPICMAKTQYSFSDDP 495 (554)
T ss_pred HHHHHHHHHHhCCcccceeecccCCcHHHHHHHHHHHhcCCcceeeCHHHHHHHHHHHHhCCCCCceeEecCcccccCCH
Confidence 999999999998779999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 577 AEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 577 ~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
+|+|+|+||+|||||+|+|+|||||||+||+|||||||||.|+|++|||| ++|+|+|||
T Consensus 496 ~llg~P~~F~v~Ir~~~~s~GAGFival~g~ImtMPGLpk~Paa~~idv~-e~G~i~GLf 554 (554)
T COG2759 496 SLLGAPTGFTVPIRELRLSAGAGFIVALTGEIMTMPGLPKKPAAENIDVD-EDGEIVGLF 554 (554)
T ss_pred hhcCCCCCcEEEeeEeEecCCCceEeeeccccccCCCCCCCcchhceeec-CCCceeccC
Confidence 99999999999999999999999999999999999999999999999999 999999998
No 6
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=7.3e-263 Score=2095.27 Aligned_cols=576 Identities=54% Similarity=0.863 Sum_probs=565.5
Q ss_pred CCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 16 VPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 16 m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
|+|||||||+++++||++||+++||++||||+||+|||||+++++++++++|+||||+||+++|||+||||||||+||+|
T Consensus 1 m~sdieia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~ 80 (578)
T PRK13506 1 MLSDIEISRQAPLKPIAEIAAKLGLLPDELSPFGHTKAKVSLSVLKRLADKPKGKLVLVTAITPTPLGEGKTVTTIGLTQ 80 (578)
T ss_pred CCchHHHHhhCCCCCHHHHHHHcCCCHHHHhhcCCcceecCHHHHHhhccCCCCeEEEEEecCCCCCCCCHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred HHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChhHh
Q 006673 96 ALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKAL 175 (636)
Q Consensus 96 aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~ 175 (636)
+| +++|++++.|||||||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||+|+++|++|
T Consensus 81 ~l-a~~Gk~~i~~LR~Pslg~~fg~kgga~GGGlsqvlpme~iNLHfTGD~hAItaA~NLlaA~iDn~i~~gn~~~~~~~ 159 (578)
T PRK13506 81 GL-NALGQKVCACIRQPSMGPVFGVKGGAAGGGYAQVVPMEELNLHLTGDIHAVSAAHNLAAAAIDARLFHEQRLGYDAF 159 (578)
T ss_pred HH-HHhCCceEEEeccCCcCCccCCCCCCCCCCeeeeeeHhhccccccChHHHHHHHHHHHHHHHHHHHhccCccCccch
Confidence 99 59999999999999999999999999999999999999999999999999999999999999999999997665542
Q ss_pred hhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCCC
Q 006673 176 FNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKG 255 (636)
Q Consensus 176 ~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G 255 (636)
+|+++|++|+|||++|+|+||||||||+||+|+||+|++.||
T Consensus 160 --------------------------------------~~~~~~~~l~IDp~~I~w~Rv~DmNDR~LR~I~vglg~~~~G 201 (578)
T PRK13506 160 --------------------------------------EAQSGLPALDIDPEQILWKRVVDHNDRALRMITVGLGENGNG 201 (578)
T ss_pred --------------------------------------hhhccccccCcCcCeeEEeecccccchhhhceeeCcCCCCCC
Confidence 389999999999999999999999999999999999999999
Q ss_pred cceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCceeEE
Q 006673 256 MVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLV 335 (636)
Q Consensus 256 ~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa~V 335 (636)
+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||
T Consensus 202 ~~Re~gFdITvASEiMAIlcLa~dl~Dlk~Rl~~ivv~~~~~g~pVta~DL~~~GAm~~LLkDAikPNLvQTlEgtPa~v 281 (578)
T PRK13506 202 PEREDGFDITAASELMAILALSRDLKDMRQRIGRLVLAYNLQGQPITAEDLGVAGAMTVIMKDAIEPTLMQTLEGVPCLI 281 (578)
T ss_pred CcccCCceeeHHHHHHHHHHHcCCHHHHHHHhhcEEEEEcCCCCceeHHHccchHhHHHHHHHhccchhheecCCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCcc
Q 006673 336 HAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVV 415 (636)
Q Consensus 336 HgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~ 415 (636)
|||||||||||||||||||+||||+ ||||||||||||||||||||||||.+|++|||+||||||||||||||+....
T Consensus 282 HgGPFANIAhG~nSviAt~~aLkla---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~~ 358 (578)
T PRK13506 282 HAGPFANIAHGNSSIIADRIALKLA---DYVVTEGGFGSDMGFEKFCNIKARQSGKAPDCAVLVATLRALKANSGLYDLR 358 (578)
T ss_pred ecCCcccccccchHHHHHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCceEEEEEEeehHHhcCCCCCcc
Confidence 9999999999999999999999999 9999999999999999999999999999999999999999999999988889
Q ss_pred CCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH-cCCCeEEEcCccccCcc
Q 006673 416 AGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-AGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 416 ~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~-~Gv~~~avs~~wa~GGe 494 (636)
.|+|||++|.+||+++|++||+||+|||+|+++||+|||||||+|++||++||++|+++|++ .|+. +++|+||++|||
T Consensus 359 ~g~pl~~~l~~en~~al~~G~~NL~~Hi~n~~~fg~pvVVaiN~F~~Dt~~Ei~~~~~~~~~~~~~~-~~~~~~wa~GGe 437 (578)
T PRK13506 359 PGQALPDSINAPDQARLEAGFANLKWHINNVAQYGLPVVVAINRFPTDTDEELEWLKEAVLLTGAFG-CEISEAFAQGGE 437 (578)
T ss_pred cCcccchhccccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCc-EEEechhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999 5665 999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCC
Q 006673 495 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFS 573 (636)
Q Consensus 495 Ga~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlS 573 (636)
|++|||++|+++|++ +++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++|||||||||||||
T Consensus 438 Ga~eLA~~Vv~a~e~-~s~fk~LYd~~~sI~eKIetIAkeIYGA~gVefS~~A~kqLk~ie~~Gf~~LPVCmAKTq~S~S 516 (578)
T PRK13506 438 GATALAQAVVRACEQ-PSQFKLLYPDEMSLEAKLMTLAEVGYGAAGVSLSDKAKQQLAQLTALGYDHLPVCMAKTPLSIS 516 (578)
T ss_pred hHHHHHHHHHHHhhC-cCCCcccCCCCCCHHHHHHHHHHHccCCCceEECHHHHHHHHHHHHcCCCCCCEEEEecCCccC
Confidence 999999999999986 58899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 574 HNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 574 dDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
|||+++|+|+||+||||||++|+||||||++||+|||||||||+|+|++|||| ++|+|+|||
T Consensus 517 ~d~~l~g~P~~f~~~ir~~~~~~GAgfiv~~~g~i~tMPGLp~~Paa~~idid-~~g~i~Gl~ 578 (578)
T PRK13506 517 HDPALKGAPTDFEVPIRELRLCAGAGFITALVGNVMTMPGLGLKPGYLNIDID-ADGEIVGLS 578 (578)
T ss_pred CChhhcCCCCCcEEEeeEEEEcCCCCEEEEecCccccCCCCCCCCccccCccC-CCCcEecCC
Confidence 99999999999999999999999999999999999999999999999999999 999999998
No 7
>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]
Probab=100.00 E-value=8.2e-258 Score=2038.98 Aligned_cols=627 Identities=64% Similarity=1.046 Sum_probs=621.2
Q ss_pred CccCcccCCCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCC
Q 006673 6 TVRKLQVVSPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEG 85 (636)
Q Consensus 6 ~~~~~~~~~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEG 85 (636)
++.||.++.|+||||+|||+++||+|.++|+++||.+.|||.||+|||||++++++|++.|++||||+||+|||||+|||
T Consensus 302 ~~~pl~l~tpvpsdidisrsq~pk~i~~la~e~gi~s~ele~yg~~kakv~l~v~erl~hr~dg~yvvvsgitptp~geg 381 (935)
T KOG4230|consen 302 DLLPLKLKTPVPSDIDISRSQEPKLIGQLAKELGIYSHELELYGHYKAKVNLAVLERLKHRKDGKYVVVSGITPTPLGEG 381 (935)
T ss_pred CCCccccCCCCCcccchhhccCcchHHHHHHHhchhhHHHHhhcchhhhcCHHHHHHHhccCCCcEEEEeccCCCCCCCC
Confidence 46677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhh
Q 006673 86 KSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIF 165 (636)
Q Consensus 86 KtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~ 165 (636)
|||||+||+|||+ +|||.+++|+||||+||+||+||||||||||||+||||||||+||||||||||||||+|+||+|||
T Consensus 382 kst~t~glvqal~-~l~k~~iacvrqpsqgptfgvkggaagggysq~ipmdefnlhltgdihaitaannllaaaidtrmf 460 (935)
T KOG4230|consen 382 KSTTTAGLVQALG-ALGKLAIACVRQPSQGPTFGVKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRMF 460 (935)
T ss_pred cchhHHHHHHHHH-hhCCcceeeecCCCcCCccccccccCCCccceeeehhhcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999996 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeeccccccccccee
Q 006673 166 HEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (636)
Q Consensus 166 ~~n~~~~~~~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I 245 (636)
|||+|+|++||+|||| +|+|+|+|+|+|+|||+||||+|+||++|||||+++|.||||||++|+|+||+|+|||+||+|
T Consensus 461 he~tq~daal~krlvp-~kng~r~f~~~m~rrlkrl~i~k~dp~~lt~ee~~~farlnidpdtit~~rvldvndrflr~i 539 (935)
T KOG4230|consen 461 HENTQSDAALYKRLVP-VKNGKRKFTPSMIRRLKRLGIEKTDPEDLTPEEIKKFARLNIDPDTITINRVLDVNDRFLRQI 539 (935)
T ss_pred hhcccchHHHHHhhcc-ccCCeeecCHHHHHHHHHhccccCCcccCCHHHHHHhHcccCCCCeeEEEEEeccchhhhhhe
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCce
Q 006673 246 TIGQGPEEKGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLM 325 (636)
Q Consensus 246 ~iGlg~~~~G~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLv 325 (636)
+||+.++++|+.|.+|||||||||+||||+||+||.|||+||||||||.+++|+|||++||||+||+|+|||||||||||
T Consensus 540 tig~a~tekg~tr~t~fdisvase~mailals~dl~dm~erlgrmvva~dk~g~pvtaedlgv~galtvllkdaikpnlm 619 (935)
T KOG4230|consen 540 TIGQAPTEKGHTRTTGFDISVASECMAILALSKDLNDMKERLGRMVVAADKYGEPVTAEDLGVSGALTVLLKDAIKPNLM 619 (935)
T ss_pred ecccCccccCcccccccceehHHHHHHHHHHhccHHHHHHHhhcEEEeecCCCCcccHHhcCcchhHHHHHHhhcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceeEEcccCccccccCCchHHHHHHHHhhcCCCC------eEEeeccccccccchhccccccccCCCCcceEEEE
Q 006673 326 QTLEGTPVLVHAGPFANIAHGNSSIVADKIALKLVGPGG------FVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIV 399 (636)
Q Consensus 326 QTlEgtPa~VHgGPFANIAhG~nSviAt~~aLklag~~d------yvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlV 399 (636)
|||||||||||+||||||+||.||||||++||||+|+|. ||||||||++|||+|||||||||+|||.||+||||
T Consensus 620 qtlegtpv~vhagpfanisigassiiadrialklvgte~~~keagyvvteagf~~dmgmekffnikcr~sgl~p~avvlv 699 (935)
T KOG4230|consen 620 QTLEGTPVFVHAGPFANISIGASSIIADRIALKLVGTESRPKEAGYVVTEAGFASDMGMEKFFNIKCRYSGLVPNAVVLV 699 (935)
T ss_pred hhccCCeeEEecccccccccchHHHHHHHHHHHhcCCCCCcccCceEEEecccccccchhheeeeeeecCCCCCceEEEe
Confidence 999999999999999999999999999999999999995 99999999999999999999999999999999999
Q ss_pred eeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC
Q 006673 400 ATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG 479 (636)
Q Consensus 400 aTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~G 479 (636)
|||||||+|||.|...+|+|||++|.+||+|.+++||+||.|||+|+++||+|||||||+|.|||+.||+.|++.+.++|
T Consensus 700 atvralk~hgggp~v~pg~plp~~y~~en~dlv~kg~snl~k~i~n~~~fgipvvvain~f~tds~~ei~~ir~~al~ag 779 (935)
T KOG4230|consen 700 ATVRALKLHGGGPKVKPGQPLPEEYTEENLDLVEKGCSNLVKQIENIKKFGIPVVVAINKFKTDSEKEIEAIREAALEAG 779 (935)
T ss_pred ehhHHHHhcCCCCCCCCCCCCcHHHHHhhHHHHHHHHHHHHHHHHhHHhcCCCEEEEeccccCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCC
Q 006673 480 AFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGF 558 (636)
Q Consensus 480 v~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~ 558 (636)
+.+++.|+||++||+||++||++|+++|++ +++|++|||.+.|+|+||+.||+ +|||+++++||+|+++++.|.++||
T Consensus 780 a~dav~snhwaeggkgai~la~av~~a~~~-~s~f~llydv~~~iedk~~~iaqkmyga~~ie~~p~aq~ki~~y~kqgf 858 (935)
T KOG4230|consen 780 AFDAVTSNHWAEGGKGAIELAKAVITACDS-PSKFRLLYDVNSSIEDKLTIIAQKMYGAAGIELSPEAQEKIDTYKKQGF 858 (935)
T ss_pred CcccccccchhhcCccHHHHHHHHHHHhcC-CcceeEEEecCccHHHHHHHHHHHHcCCccceeCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999985 68999999999999999999999 9999999999999999999999999
Q ss_pred CCCCeeEeecCCCCCCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 559 SGLPICMAKTQYSFSHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 559 ~~LPVCmAKTqySlSdDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
++||||||||||||||||.++|+|+||++||||+|+|+||||+|||++.|+||||||+.|++++|||| ++|+|+|||
T Consensus 859 gnlpiciaktqyslshdp~~kgvpt~ft~pird~r~s~gagflyplaa~iqtipglpt~p~y~~idi~-~~gei~gl~ 935 (935)
T KOG4230|consen 859 GNLPICIAKTQYSLSHDPELKGVPTGFTVPIRDMRLSAGAGFLYPLAAEIQTIPGLPTYPAYMNIDID-ENGEIVGLF 935 (935)
T ss_pred CCCceeeeecccccccCccccCCCCCceeechhhhcccCCcchhhhhHHhhcCCCCCCccceeeeeec-CCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999 999999998
No 8
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=100.00 E-value=1.6e-253 Score=2025.88 Aligned_cols=556 Identities=53% Similarity=0.861 Sum_probs=549.4
Q ss_pred CCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHH
Q 006673 15 PVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (636)
Q Consensus 15 ~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~ 94 (636)
+|||||||||+++++||++||+++||++|+||+||+|||||+++.+++++++|++|+|+||+++|||+||||||||+||+
T Consensus 1 ~~~sd~eia~~~~~~~i~~ia~~~gl~~~~~e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA 80 (557)
T PRK13505 1 TMKSDIEIAQEATLKPITEIAAKLGIPEDDLEPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLG 80 (557)
T ss_pred CCCChHHHHhhCCCcCHHHHHHHcCCCHHHHHhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999988889999999999999999999999999999
Q ss_pred HHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChhH
Q 006673 95 QALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKA 174 (636)
Q Consensus 95 ~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~ 174 (636)
|+| +++|++++++||||||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 81 ~~l-a~~GkkvlliLR~Psl~~~fg~kggaaGGG~~qvlpme~inLhftGD~hAit~A~NLlaA~idn~i~~gn------ 153 (557)
T PRK13505 81 DAL-NKIGKKTVIALREPSLGPVFGIKGGAAGGGYAQVVPMEDINLHFTGDFHAITSANNLLAALIDNHIHQGN------ 153 (557)
T ss_pred HHH-HHcCCeEEEEEecCCcccccCCCCCcCCCCceeeecHhHccccccChHHHHHHHHHHHHHHHHHHHhccC------
Confidence 999 5999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCC
Q 006673 175 LFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEK 254 (636)
Q Consensus 175 ~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~ 254 (636)
+|+|||++|+||||||||||+||+|+||+|++.|
T Consensus 154 ----------------------------------------------~l~id~~~i~w~Rv~D~NDR~LR~i~iglg~~~~ 187 (557)
T PRK13505 154 ----------------------------------------------ELGIDPRRITWKRVLDMNDRALRNIVVGLGGPAN 187 (557)
T ss_pred ----------------------------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCC
Confidence 7999999999999999999999999999999999
Q ss_pred CcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCceeE
Q 006673 255 GMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVL 334 (636)
Q Consensus 255 G~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa~ 334 (636)
|+|||||||||||||||||||||+|++|||+|||||||||++||+||||+||+++||||+|||||||||||||+||||||
T Consensus 188 G~~re~gFdIT~ASEiMAilcLa~~l~Dl~~Rl~~ivv~~~~~~~pvt~~dl~~~GAm~~lLkdAi~PnLvQTle~tPa~ 267 (557)
T PRK13505 188 GVPREDGFDITVASEIMAILCLATDLKDLKERLGRIVVGYTYDGKPVTVKDLKVEGAMALLLKDAIKPNLVQTLEGTPAF 267 (557)
T ss_pred CCcccCCceeeHHHHHHHHHHHhCCHHHHHHHHhCEEEEEcCCCCceeHHHcCchHHHHHHHHhhcccceeeecCCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCc
Q 006673 335 VHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQV 414 (636)
Q Consensus 335 VHgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~ 414 (636)
||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+|||+||||||||||||||+++
T Consensus 268 vHgGPFANIAhG~nSviAt~~al~la---dyvvTEaGFGaDlGaEKF~dIkcr~~gl~P~~~VlVaTvraLK~hgg~~~- 343 (557)
T PRK13505 268 VHGGPFANIAHGCNSVLATKTALKLA---DYVVTEAGFGADLGAEKFLDIKCRKAGLKPDAVVIVATVRALKMHGGVAK- 343 (557)
T ss_pred EecCCcchhhcccHHHHHHHHHHhhC---CEEEecccccCCCCCceeeeeecccCCCCCCEEEEEeehHHHHHcCCCCh-
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999986
Q ss_pred cCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 006673 415 VAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 415 ~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGe 494 (636)
++|.+||+|++++||.||+|||+|+|+||+|||||||+|++||++|+++|+++|++.|++ +++|+||++||+
T Consensus 344 -------~~l~~en~Eal~sGl~NL~RHIenvr~FGvPvVVAINKFd~DTe~Ei~~I~~~c~e~Gv~-va~~~~~~~Gg~ 415 (557)
T PRK13505 344 -------DDLKEENVEALKKGFANLERHIENIRKFGVPVVVAINKFVTDTDAEIAALKELCEELGVE-VALSEVWAKGGE 415 (557)
T ss_pred -------hhccccCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEecccccCCc
Confidence 678999999999999999999999999999999999999999999999999999999997 999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCC
Q 006673 495 GAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFS 573 (636)
Q Consensus 495 Ga~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlS 573 (636)
|+++||++|++++++++++|+++|++++|++|||++||+ ||||++|+||++|++||++||++||++|||||||||||||
T Consensus 416 Gai~LA~aVveA~~~~~s~f~~lY~~d~sl~eKIe~IAkkIYGA~~V~~s~~A~kqL~~~e~~Gf~~lPVCmAKTqyS~s 495 (557)
T PRK13505 416 GGVELAEKVVELIEEGESNFKPLYDDEDSLEEKIEKIATKIYGAKGVEFSPKAKKQLKQIEKNGWDKLPVCMAKTQYSFS 495 (557)
T ss_pred chHHHHHHHHHHHhcCCCCCceecCCCCcHHHHHHHHHHHccCCCCeeECHHHHHHHHHHHHcCCCCCCeEEEccCCCcC
Confidence 999999999999996567899999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 574 HNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 574 dDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
|||+++|+|+||+||||||++|+||||||++||+|||||||||+|+|++|||| ++|+|+|||
T Consensus 496 ~d~~~~g~p~~f~~~ir~~~~~~GAgfiv~~~g~i~tmPGLp~~Paa~~idid-~~g~i~gl~ 557 (557)
T PRK13505 496 DDPKLLGAPTGFTITVRELRPSAGAGFIVALTGDIMTMPGLPKVPAALNIDVD-EDGNIVGLF 557 (557)
T ss_pred CChhhhCCCCCcEEEeeEEEEcCCCCEEEEecCCcccCCCCCCCCcccccccC-CCCceecCC
Confidence 99999999999999999999999999999999999999999999999999999 999999998
No 9
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=100.00 E-value=6.6e-248 Score=1964.79 Aligned_cols=522 Identities=64% Similarity=1.020 Sum_probs=514.4
Q ss_pred HHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 32 SEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 32 ~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
++||+++||++||+||||+|||||+++++++++++|++|||+||+++|||+||||||||+||+|+| +++|++++++|||
T Consensus 1 ~~ia~~lgl~~~~~~~yG~~kaKi~~~~~~~~~~~~~~k~IlVTs~~PTp~GEGKTT~si~La~~l-a~~Gkk~l~~LR~ 79 (524)
T cd00477 1 EEIAKELGLLEDELEPYGKYKAKVDLDVLKRLEKRPDGKLILVTAITPTPAGEGKTTTTIGLAQAL-NAHGKKAIACLRE 79 (524)
T ss_pred ChhHHHcCCCHHHHHhccCcceeecHHHHhhhccCCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHH-HHhCCcEEEEEec
Confidence 379999999999999999999999999999999889999999999999999999999999999999 5899999999999
Q ss_pred CCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCCcchh
Q 006673 112 PSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGERSFS 191 (636)
Q Consensus 112 PSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~~l~~~~~~~~r~~~ 191 (636)
|||||+||+||||||||||||+|||||||||||||||||||||||||+|||||||+|
T Consensus 80 PSlg~~fg~kggaaGGG~sqvlpme~iNLhfTGD~hAItaA~NLlaA~iDn~i~~gn----------------------- 136 (524)
T cd00477 80 PSLGPTFGIKGGAAGGGYSQVIPMEEINLHFTGDIHAITAANNLLAAAIDNHIHHGN----------------------- 136 (524)
T ss_pred CCcCcccCCCCCCCCCChhhcccHhhhcccccchHHHHHHHHHHHHHHHHHHHhccc-----------------------
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCCCcceecceeEeehhhHH
Q 006673 192 NIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIM 271 (636)
Q Consensus 192 ~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r~~gFdITvASEiM 271 (636)
+|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||||||
T Consensus 137 -----------------------------~l~iDp~~I~w~Rv~D~NDR~LR~iviglGg~~~G~~re~gFdITvASEiM 187 (524)
T cd00477 137 -----------------------------RLDIDPRRITWKRVLDVNDRALRKIVIGLGGKENGVPRETGFDITVASEIM 187 (524)
T ss_pred -----------------------------ccCCCcceeEEEecccccchhhhceEeccCCCCCCccccCCceeeHHHHHH
Confidence 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCceeEEcccCccccccCCchHH
Q 006673 272 AVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGNSSIV 351 (636)
Q Consensus 272 AIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa~VHgGPFANIAhG~nSvi 351 (636)
||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||+|||||||||||||||||||||||
T Consensus 188 AIlcLa~~l~DLk~Rl~~ivv~~~~~g~PVta~DL~~~GAmt~LLkdAikPNLvQTlEgtPa~vHgGPFANIAhGcnSvi 267 (524)
T cd00477 188 AILCLATDLEDLKERLGRIVVAYSKDGEPVTAEDLGVAGAMAVLLKDAIKPNLVQTLEGTPAFVHGGPFANIAHGCNSII 267 (524)
T ss_pred HHHHHcCCHHHHHHHHhCEEEEEcCCCCcEeHHHcCchHhHHHHHHhhhCccceeecCCCceEEecCCcccccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCccccc-ccCHH
Q 006673 352 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYL-NENVA 430 (636)
Q Consensus 352 At~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~-~eNle 430 (636)
|||+||+|+ ||||||||||||||||||||||||.+||+|||+||||||||||||||+++. ++. +||++
T Consensus 268 Atk~al~la---DyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a~VlVaTvRALK~hGG~~~~--------~l~~~en~~ 336 (524)
T cd00477 268 ADKIALKLA---DYVVTEAGFGADLGAEKFFNIKCRYSGLKPDAVVLVATVRALKMHGGVPKV--------TLGLEENLE 336 (524)
T ss_pred HHHHHHhhc---CeEEeeccccCCCCCceeeeeeeccCCCCCCEEEEEEehHHHHHhCCCCcc--------cCCCccCHH
Confidence 999999999 999999999999999999999999999999999999999999999999874 455 89999
Q ss_pred HHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 431 aL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
||++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|++|||++|+++|++
T Consensus 337 al~~G~~NL~~Hi~n~~~fg~p~VVaiN~F~~Dt~~Ei~~v~~~~~~~g~~-~~~~~~~~~GG~Ga~eLA~~Vi~a~e~- 414 (524)
T cd00477 337 ALEKGFANLRKHIENIKKFGVPVVVAINKFSTDTDAELALVRKLAEEAGAF-VAVSEHWAEGGKGAVELAEAVIEACEQ- 414 (524)
T ss_pred HHHhHHHHHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHcCCC-EEEehhhhhhhhhHHHHHHHHHHHhcC-
Confidence 999999999999999999999999999999999999999999999999997 999999999999999999999999986
Q ss_pred CCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCCCCCCCCCCCCCceEEe
Q 006673 511 TQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFILPI 589 (636)
Q Consensus 511 ~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlSdDp~l~G~P~gf~l~V 589 (636)
+++|+|+|++++||+|||++||+ ||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+|||
T Consensus 415 ~s~fk~LY~~~~si~eKIetIAk~IYGA~~V~~S~~A~kqLk~ie~~Gfg~LPvCmAKTqyS~S~d~~~~g~P~~f~~~v 494 (524)
T cd00477 415 PSEFKFLYDLEDPLEDKIETIAKKIYGADGVELSPKAKKKLARYEKQGFGNLPVCMAKTQYSLSDDPSLKGAPTGFTLPI 494 (524)
T ss_pred CCCCccccCCCCCHHHHHHHHHHHccCCCceeECHHHHHHHHHHHHcCCCCCCeEEEcCCCCcCCCccccCCCCCcEEEe
Confidence 58899999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeCCCceEEeecCccccCCCCCCCCc
Q 006673 590 RDVRASIGAGFIYPLVGTMSTMPGLPTRPC 619 (636)
Q Consensus 590 rdv~~~aGAGFival~G~ImtMPGLPk~Pa 619 (636)
|||++|+||||||++||+|||||||||+|+
T Consensus 495 r~~~~~~GAgfiv~l~g~i~tMPGLp~~Pa 524 (524)
T cd00477 495 RDVRLSAGAGFIVALTGDIMTMPGLPKRPA 524 (524)
T ss_pred eEEEEcCCCCEEEEecCCcccCCCCCCCCC
Confidence 999999999999999999999999999996
No 10
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=96.76 E-value=0.0013 Score=66.52 Aligned_cols=51 Identities=25% Similarity=0.299 Sum_probs=42.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE---EeeCCCCCCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~---~lRePSlGP~FGiK 121 (636)
+..|.|.||+-. -||||||++..|+.+| ++.|+++.+ .+|.|++.-.||.+
T Consensus 101 ~~~~vi~vts~~---~g~Gktt~a~nLA~~l-a~~g~~VllID~D~~~~~~~~~~~~~ 154 (274)
T TIGR03029 101 EGRKALAVVSAK---SGEGCSYIAANLAIVF-SQLGEKTLLIDANLRDPVQHRNFKLS 154 (274)
T ss_pred CCCeEEEEECCC---CCCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCccHHHhcCCC
Confidence 457899998765 4999999999999999 689999874 47999988777653
No 11
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.02 E-value=0.0076 Score=58.29 Aligned_cols=52 Identities=27% Similarity=0.340 Sum_probs=41.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
++-|.|.||+.. -|+||||++..|+.+| ++.|+++.+. ++.|++.-.||..+
T Consensus 15 ~~~kvI~v~s~k---gG~GKTt~a~~LA~~l-a~~G~rVllID~D~~~~~l~~~~~~~~ 69 (204)
T TIGR01007 15 AEIKVLLITSVK---PGEGKSTTSANIAVAF-AQAGYKTLLIDGDMRNSVMSGTFKSQN 69 (204)
T ss_pred CCCcEEEEecCC---CCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCChhHHHHhCCCC
Confidence 447899888764 5999999999999999 5889997743 78888776666543
No 12
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.02 E-value=0.066 Score=43.60 Aligned_cols=26 Identities=38% Similarity=0.450 Sum_probs=21.4
Q ss_pred CCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 83 GEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 83 GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
|+||||++..|++.| ++.|++. +++.
T Consensus 9 G~Gktt~~~~l~~~l-~~~g~~v-~~~~ 34 (99)
T cd01983 9 GVGKTTLAANLAAAL-AKRGKRV-LLID 34 (99)
T ss_pred CCCHHHHHHHHHHHH-HHCCCeE-EEEC
Confidence 999999999999999 4777775 4444
No 13
>CHL00175 minD septum-site determining protein; Validated
Probab=95.92 E-value=0.0097 Score=60.40 Aligned_cols=55 Identities=22% Similarity=0.242 Sum_probs=42.1
Q ss_pred cCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 64 EGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 64 ~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
+.++.+|.|.|++- .=|.||||++..|+.+| ++.|+++.+. ++.+++.-.||+..
T Consensus 10 ~~~~~~~vi~v~s~---KGGvGKTt~a~nLA~~L-a~~g~~vlliD~D~~~~~l~~~lg~~~ 67 (281)
T CHL00175 10 KSATMSRIIVITSG---KGGVGKTTTTANLGMSI-ARLGYRVALIDADIGLRNLDLLLGLEN 67 (281)
T ss_pred hcCCCceEEEEEcC---CCCCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCChhhhcCCCC
Confidence 33456888888765 56999999999999999 5889997765 44566777777753
No 14
>PRK11519 tyrosine kinase; Provisional
Probab=95.90 E-value=0.0081 Score=69.71 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=44.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
...|.|+||+..| ||||||++..|+.+| ++.|+++.+. +|.|++.-.||...
T Consensus 524 ~~~kvi~vts~~~---geGKTt~a~nLA~~l-a~~g~rvLlID~Dlr~~~~~~~~~~~~ 578 (719)
T PRK11519 524 AQNNVLMMTGVSP---SIGKTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 578 (719)
T ss_pred CCceEEEEECCCC---CCCHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCcHHHHhCCCC
Confidence 4578999998777 999999999999999 6899998765 89999988888653
No 15
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=95.37 E-value=0.013 Score=67.86 Aligned_cols=51 Identities=18% Similarity=0.087 Sum_probs=43.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiK 121 (636)
+..|.|.||+-.| ||||||++..|+.+| ++.|+++.+. +|.||+.=.||+.
T Consensus 544 ~~~kvi~vts~~~---G~GKTt~a~nLA~~l-A~~g~rvLlID~D~~~~~l~~~~~~~ 597 (754)
T TIGR01005 544 AEPEVVETQRPRP---VLGKSDIEANAAALI-ASGGKRALLIDADGRKAALSQILVAR 597 (754)
T ss_pred CCceEEEeecCCC---CCChhHHHHHHHHHH-HhCCCeEEEEeCCCCchhHHHHhCCc
Confidence 4578888887654 899999999999999 5899997765 7999998888864
No 16
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=95.32 E-value=0.023 Score=55.63 Aligned_cols=52 Identities=35% Similarity=0.486 Sum_probs=39.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE---EeeCCCCCCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIK 121 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~---~lRePSlGP~FGiK 121 (636)
..+|.|.||+ ..-|+||||++..|+.+|....|+++.+ .++.|++...||+.
T Consensus 33 ~~~~vi~v~s---~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~ 87 (207)
T TIGR03018 33 KNNNLIMVTS---SLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLE 87 (207)
T ss_pred CCCeEEEEEC---CCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCC
Confidence 4578887775 4679999999999999994235998764 46778887777654
No 17
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=95.24 E-value=0.02 Score=62.25 Aligned_cols=91 Identities=19% Similarity=0.204 Sum_probs=58.8
Q ss_pred CCCHHHHHHHcCCCCcccccc--------------cCe--eeeeccchhhhc-------cCCCCCcEEEEeecCCCCCCC
Q 006673 28 PLHISEIAQELNLKPNHYDLY--------------GKY--KAKVLLSVLDEL-------EGSADGYYVVVGGITPTPLGE 84 (636)
Q Consensus 28 ~~~I~~ia~~lgl~~~~l~~Y--------------G~~--kAKi~~~~~~~~-------~~~~~gklilVTaitPTP~GE 84 (636)
.-+|.|+|+.+|++++.+-.| |+. +.-.+++-+.++ ..++.|.-.-|-+|.--.-|.
T Consensus 39 ~~~i~e~A~~~gvs~~tiR~ye~~gll~~~~~~~~gr~~~~~~ftL~ei~~lr~~~~~~~~r~~~~~~~vIai~n~KGGV 118 (388)
T PRK13705 39 RWRIGEAADLVGVSSQAIRDAEKAGRLPHPDMEMRGRVEQRVGYTIEQINHMRDVFGTRLRRAEDVFPPVIGVAAHKGGV 118 (388)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCcchhhcCcCHHHHHHHHHhhcccccccCCCCCeEEEEECCCCCc
Confidence 347999999999999888877 321 111233322221 122334222233455568899
Q ss_pred CcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccc
Q 006673 85 GKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFG 119 (636)
Q Consensus 85 GKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FG 119 (636)
|||||++.|+.+| ++.|+++.+. -.|-|+--.||
T Consensus 119 GKTT~a~nLA~~L-A~~G~rVLlID~~DpQ~nlt~~~g 155 (388)
T PRK13705 119 YKTSVSVHLAQDL-ALKGLRVLLVEGNDPQGTASMYHG 155 (388)
T ss_pred hHHHHHHHHHHHH-HhcCCCeEEEcCCCCCCchhhhcC
Confidence 9999999999999 6899998765 25656655565
No 18
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=95.15 E-value=0.02 Score=66.68 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=43.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiK 121 (636)
..+|.|+||+-.| ||||||++..|+.+| ++.|+++.+. +|.|++--.||+.
T Consensus 529 ~~~kvI~vtS~~~---g~GKTtva~nLA~~l-a~~G~rVLlID~D~r~~~l~~~~~~~ 582 (726)
T PRK09841 529 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVS 582 (726)
T ss_pred CCCeEEEEecCCC---CCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCcHHHHcCCC
Confidence 4689999998765 999999999999999 6899998854 8999987778765
No 19
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=95.03 E-value=0.03 Score=59.92 Aligned_cols=105 Identities=11% Similarity=0.094 Sum_probs=69.1
Q ss_pred CHHHHHHHHhHHHHHHHHHhhcCCc---EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 006673 428 NVALVEAGCVNLARHIANTKAYGAN---VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~~fGvP---vVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
++.++.. -.|+.|.++.+++.|.+ .-+.+|++..+. + +.++|++.|++ +. |-+-.-+.|.
T Consensus 183 e~~si~~-A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~--~---ie~~ae~lgi~-vL----------g~IP~D~~V~ 245 (329)
T cd02033 183 DLQSLYV-ANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG--E---AQAFAAHAGIP-IL----------AAIPADEELR 245 (329)
T ss_pred hHHHHHH-HHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc--h---HHHHHHHhCCC-EE----------EECCCCHHHH
Confidence 4444432 34788889999888755 568899976533 3 56778888886 42 3344556777
Q ss_pred HHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHH
Q 006673 505 RACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMY 553 (636)
Q Consensus 505 ~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~i 553 (636)
++..+. ++++..+.++.+.++.||+ |...-.+.-.+.-+++|..+
T Consensus 246 ~a~~~g----~~~~~p~s~~a~~f~~LA~~I~~~~~~~~~~~~~~~~~~~ 291 (329)
T cd02033 246 RKSAAY----QIVGRPGTTWGPLFEQLATNVAEAPPMRPKPLSQDELLGL 291 (329)
T ss_pred HHHHcC----CeecCCCCHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHH
Confidence 776542 2445556678999999999 87766665555555555444
No 20
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=94.87 E-value=0.023 Score=61.03 Aligned_cols=91 Identities=25% Similarity=0.255 Sum_probs=54.1
Q ss_pred CCHHHHHHHcCCCCcccccc---cC-eeeee--------c---cchhhh---c---------cCCCCCcEEEEeecCCCC
Q 006673 29 LHISEIAQELNLKPNHYDLY---GK-YKAKV--------L---LSVLDE---L---------EGSADGYYVVVGGITPTP 81 (636)
Q Consensus 29 ~~I~~ia~~lgl~~~~l~~Y---G~-~kAKi--------~---~~~~~~---~---------~~~~~gklilVTaitPTP 81 (636)
-+|.|+|+.+|++++-|-.| |. +..+- + +..|.. . ..++.|+-.-|-+++-..
T Consensus 34 ~~i~eva~~~gv~~~tlr~~e~~~~~~~~~r~~~g~r~yt~~di~~l~~~~~~~~~~~~~~~~~r~~g~~~~vI~v~n~K 113 (387)
T TIGR03453 34 FTSGEVAKLLGVSDSYLRQLSLEGKGPEPETLSNGRRSYTLEQINELRRHLAQRGREARRYLPHRRGGEHLQVIAVTNFK 113 (387)
T ss_pred CCHHHHHHHHCcCHHHHHHHHHcCCCCCCCcCCCCceeeCHHHHHHHHHHHHhccccccccCCCcCCCCCceEEEEEccC
Confidence 38999999999998877655 10 01110 0 111111 0 111223222233444557
Q ss_pred CCCCcchhHHHHHHHHhhhcCCcEEEEe--eCCCCCCcccc
Q 006673 82 LGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGI 120 (636)
Q Consensus 82 ~GEGKtTttIGL~~aL~~~lg~~~~~~l--RePSlGP~FGi 120 (636)
-|+||||||+-|+.+| ++.|+++.+.= -|+|+.-.||.
T Consensus 114 GGvGKTT~a~nLA~~L-a~~G~rVLlID~DpQ~~ls~~~g~ 153 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYL-ALRGYRVLAIDLDPQASLSALFGY 153 (387)
T ss_pred CCcCHHHHHHHHHHHH-HhcCCCEEEEecCCCCCHHHHcCC
Confidence 7999999999999999 57899865431 35666666664
No 21
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=94.74 E-value=0.043 Score=59.75 Aligned_cols=90 Identities=19% Similarity=0.210 Sum_probs=57.0
Q ss_pred CCHHHHHHHcCCCCcccccc--------------cCeeee--eccchhhh-------ccCCCCCc-EEEEeecCCCCCCC
Q 006673 29 LHISEIAQELNLKPNHYDLY--------------GKYKAK--VLLSVLDE-------LEGSADGY-YVVVGGITPTPLGE 84 (636)
Q Consensus 29 ~~I~~ia~~lgl~~~~l~~Y--------------G~~kAK--i~~~~~~~-------~~~~~~gk-lilVTaitPTP~GE 84 (636)
-.+.|+|+.+|+++..|..| |+-..+ .+++-+.. ...++.++ ...+ ++.-..-|.
T Consensus 40 f~~~eaA~l~gvs~~~lr~~~~~g~~p~~~~~~~gr~~~R~~ytl~eI~~lr~~~~~~~~r~~~~~~~vI-av~n~KGGV 118 (387)
T PHA02519 40 WGITEVADLIGVTPQAIRDAEKSGRLPPPDFETRGRVERRAGYTIDQISHMRDHFGNPNQRPDDKNPVVL-AVMSHKGGV 118 (387)
T ss_pred cCHHHHHHHhCcCHHHHHHHHHcCCCCCCccCCCCcccccceEcHHHHHHHHHHhhccccCcCCCCceEE-EEecCCCCC
Confidence 37999999999998777655 221112 23322221 11223343 2222 333457899
Q ss_pred CcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccc
Q 006673 85 GKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGI 120 (636)
Q Consensus 85 GKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGi 120 (636)
||||||+-|+++| ++.|+++.+. -.|.|+--.||.
T Consensus 119 GKTTta~nLA~~L-A~~G~rVLlIDl~DpQ~nlt~~~g~ 156 (387)
T PHA02519 119 YKTSSAVHTAQWL-ALQGHRVLLIEGNDPQGTASMYHGY 156 (387)
T ss_pred cHHHHHHHHHHHH-HhCCCcEEEEeCCCCCCCcccccCc
Confidence 9999999999999 5899997654 356677767764
No 22
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.69 E-value=0.038 Score=54.43 Aligned_cols=48 Identities=35% Similarity=0.328 Sum_probs=34.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee---CCCCCCcccc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR---QPSQGPTFGI 120 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR---ePSlGP~FGi 120 (636)
||.|.|++ +.-|+||||++..|+.+| ++.|+++.+.=- +|++.-.||.
T Consensus 1 ~~ii~v~s---~kGGvGKTt~a~~lA~~l-a~~g~~vlliD~D~~~~~~~~~lg~ 51 (261)
T TIGR01968 1 ARVIVITS---GKGGVGKTTTTANLGTAL-ARLGKKVVLIDADIGLRNLDLLLGL 51 (261)
T ss_pred CeEEEEec---CCCCccHHHHHHHHHHHH-HHcCCeEEEEECCCCCCCeeEEeCC
Confidence 56777765 467999999999999999 588999876533 3444444544
No 23
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.38 E-value=0.045 Score=58.83 Aligned_cols=44 Identities=32% Similarity=0.515 Sum_probs=35.4
Q ss_pred ccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 63 LEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 63 ~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+.++++| |||||+ |-|+|||||--.+.+-+| +--...|+++-.|
T Consensus 120 ~~~~~~G-LILVTG----pTGSGKSTTlAamId~iN-~~~~~HIlTIEDP 163 (353)
T COG2805 120 LAESPRG-LILVTG----PTGSGKSTTLAAMIDYIN-KHKAKHILTIEDP 163 (353)
T ss_pred HHhCCCc-eEEEeC----CCCCcHHHHHHHHHHHHh-ccCCcceEEecCc
Confidence 3444555 999999 449999999999999996 6677778888765
No 24
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=94.26 E-value=0.033 Score=52.06 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=29.3
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCC
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSl 114 (636)
|++|-.|+||||++.||+.+| .+-|+++. ++.|.+
T Consensus 2 I~~t~~~~GKT~va~~L~~~l-~~~g~~V~--~~kP~~ 36 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKL-KKAGYSVG--YYKPVQ 36 (166)
T ss_pred eecCCCCccHHHHHHHHHHHH-HHCCCcEE--EEEeee
Confidence 688999999999999999999 58898764 466554
No 25
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.17 E-value=0.039 Score=57.03 Aligned_cols=52 Identities=37% Similarity=0.381 Sum_probs=44.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE---EeeCCCCCCccccccC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKGG 123 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~---~lRePSlGP~FGiKGG 123 (636)
..+.|.||+ .+-|+||||||.-|+.+| ++.|+++.+ -+|.||+--.||+...
T Consensus 56 ~~~~I~V~S---~kgGvGKStva~nLA~al-A~~G~rVlliDaD~~gps~~~~l~~~~~ 110 (265)
T COG0489 56 VKNVIAVTS---GKGGVGKSTVAVNLAAAL-AQLGKRVLLLDADLRGPSIPRMLGLENL 110 (265)
T ss_pred cceEEEEEe---CCCCCcHHHHHHHHHHHH-HhcCCcEEEEeCcCCCCchHHHhCCCCC
Confidence 466787775 567999999999999999 699999875 4899999999998543
No 26
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=94.02 E-value=0.076 Score=58.00 Aligned_cols=46 Identities=30% Similarity=0.312 Sum_probs=32.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEe--eCCCCCCccc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFG 119 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~l--RePSlGP~FG 119 (636)
|.|.|+ =..-|.||||||+-|+++| ++.|+++.+.= -|.|+--.||
T Consensus 122 ~vIav~---n~KGGvGKTTta~nLA~~L-A~~G~rVLlIDlDpQ~~lt~~~g 169 (405)
T PRK13869 122 QVIAVT---NFKGGSGKTTTSAHLAQYL-ALQGYRVLAVDLDPQASLSALLG 169 (405)
T ss_pred eEEEEE---cCCCCCCHHHHHHHHHHHH-HhcCCceEEEcCCCCCCHHHHcC
Confidence 445444 4578999999999999999 68999865431 3444433454
No 27
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=93.25 E-value=0.071 Score=54.36 Aligned_cols=47 Identities=30% Similarity=0.322 Sum_probs=39.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
|+|++|+ .-|+||||++..|+.++ ++.|+++.+. .| ||++-+||++-
T Consensus 1 ~~~~~~g----kgG~GKtt~a~~la~~~-a~~g~~vLlvd~D~~-~sl~~~~~~~~ 50 (254)
T cd00550 1 RYIFFGG----KGGVGKTTISAATAVRL-AEQGKKVLLVSTDPA-HSLSDSFNQEF 50 (254)
T ss_pred CEEEEEC----CCCchHHHHHHHHHHHH-HHCCCCceEEeCCCc-ccHHHHhCCcc
Confidence 4677776 47999999999999999 5899998765 44 79999999984
No 28
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=93.21 E-value=0.09 Score=49.52 Aligned_cols=34 Identities=38% Similarity=0.272 Sum_probs=27.9
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
++-..-|+||||+++.|+.+| +..|+++.+.=..
T Consensus 4 v~s~kgG~GKTt~a~~LA~~l-a~~g~~vllvD~D 37 (169)
T cd02037 4 VMSGKGGVGKSTVAVNLALAL-AKLGYKVGLLDAD 37 (169)
T ss_pred EecCCCcCChhHHHHHHHHHH-HHcCCcEEEEeCC
Confidence 445567999999999999999 5889998876334
No 29
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=92.86 E-value=0.11 Score=54.01 Aligned_cols=36 Identities=44% Similarity=0.436 Sum_probs=31.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
||.|+||+ -.-|.||||||--|+-|| +++|||+++.
T Consensus 2 ~~iIVvTS---GKGGVGKTTttAnig~aL-A~~GkKv~li 37 (272)
T COG2894 2 ARIIVVTS---GKGGVGKTTTTANIGTAL-AQLGKKVVLI 37 (272)
T ss_pred ceEEEEec---CCCCcCccchhHHHHHHH-HHcCCeEEEE
Confidence 67888875 478999999999999999 6999998753
No 30
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=92.60 E-value=0.11 Score=48.13 Aligned_cols=41 Identities=39% Similarity=0.332 Sum_probs=31.0
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcc
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTF 118 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~F 118 (636)
++-+.-|+||||++..|+.+| ++.|+++.+. .++|++.-.|
T Consensus 4 v~~~kgG~GKtt~a~~la~~l-~~~g~~vllvD~D~~~~~~~~~~ 47 (179)
T cd02036 4 VTSGKGGVGKTTTTANLGTAL-AQLGYKVVLIDADLGLRNLDLIL 47 (179)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCchhhc
Confidence 345677999999999999999 5889998776 4445544443
No 31
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=92.35 E-value=0.15 Score=50.06 Aligned_cols=38 Identities=39% Similarity=0.429 Sum_probs=29.4
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.|-|++ .-|.||||+|.-|+.+| ++.|+++.+.=-.|-
T Consensus 2 ~iav~g----KGGvGKTt~~~nLA~~l-a~~G~rvLliD~D~q 39 (212)
T cd02117 2 QIAIYG----KGGIGKSTTSQNLSAAL-AEMGKKVLQVGCDPK 39 (212)
T ss_pred EEEEEC----CCcCcHHHHHHHHHHHH-HHCCCcEEEEeCCCC
Confidence 355553 88999999999999999 689999765534444
No 32
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.25 E-value=0.15 Score=51.40 Aligned_cols=39 Identities=38% Similarity=0.346 Sum_probs=30.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+|.|-|. + .-|.|||||++-|+.+| ++.|+++.+.=-.|
T Consensus 2 ~~iIav~--~--KGGVGKTT~~~nLA~~l-a~~G~kVLliD~Dp 40 (270)
T PRK13185 2 ALVLAVY--G--KGGIGKSTTSSNLSAAF-AKLGKKVLQIGCDP 40 (270)
T ss_pred ceEEEEE--C--CCCCCHHHHHHHHHHHH-HHCCCeEEEEeccC
Confidence 4566663 4 99999999999999999 58999976653444
No 33
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.22 E-value=0.14 Score=54.10 Aligned_cols=56 Identities=32% Similarity=0.389 Sum_probs=41.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC--CCCCccccccCCCCCCceeee
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVI 133 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP--SlGP~FGiKGGAaGGGysqv~ 133 (636)
|+|++++ +=|.||||++..++.++ ++-|+++.++==.| |+|.+||.+-| +.-.+|.
T Consensus 2 r~~~~~G----KGGVGKTT~aaA~A~~~-A~~G~rtLlvS~Dpa~~L~d~l~~~~~---~~~~~v~ 59 (305)
T PF02374_consen 2 RILFFGG----KGGVGKTTVAAALALAL-ARRGKRTLLVSTDPAHSLSDVLGQKLG---GEPTKVE 59 (305)
T ss_dssp SEEEEEE----STTSSHHHHHHHHHHHH-HHTTS-EEEEESSTTTHHHHHHTS--B---SS-EEET
T ss_pred eEEEEec----CCCCCcHHHHHHHHHHH-hhCCCCeeEeecCCCccHHHHhCCcCC---CCCeEec
Confidence 5778887 57999999999999999 57899998886666 68889999653 3444543
No 34
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.10 E-value=0.21 Score=46.86 Aligned_cols=40 Identities=38% Similarity=0.699 Sum_probs=28.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCcccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGi 120 (636)
+.|.+|+..+ ++|.||||.+.|++++|+ +.++--=|+|-+
T Consensus 13 ~~g~vi~L~G----dLGaGKTtf~r~l~~~lg----------~~~~V~SPTF~l 52 (123)
T PF02367_consen 13 KPGDVILLSG----DLGAGKTTFVRGLARALG----------IDEEVTSPTFSL 52 (123)
T ss_dssp SS-EEEEEEE----STTSSHHHHHHHHHHHTT------------S----TTTTS
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHcC----------CCCCcCCCCeEE
Confidence 5689999998 799999999999999995 223445577765
No 35
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=91.09 E-value=0.24 Score=48.69 Aligned_cols=44 Identities=34% Similarity=0.345 Sum_probs=32.8
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEe---eCCCCCCccccc
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL---RQPSQGPTFGIK 121 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~~l---RePSlGP~FGiK 121 (636)
+.-..-|.||||+++.|+.+| ++.|+++.+.= .++++.=.||++
T Consensus 5 v~~~KGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~~g~~ 51 (251)
T TIGR01969 5 IASGKGGTGKTTITANLGVAL-AKLGKKVLALDADITMANLELILGME 51 (251)
T ss_pred EEcCCCCCcHHHHHHHHHHHH-HHCCCeEEEEeCCCCCccceeEeCCC
Confidence 345678999999999999999 58898876652 345665556654
No 36
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=91.09 E-value=0.15 Score=50.89 Aligned_cols=103 Identities=16% Similarity=0.053 Sum_probs=56.3
Q ss_pred HHhHHHHHHHHHhh-cCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 006673 435 GCVNLARHIANTKA-YGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 435 G~~NL~kHIeNi~~-fGvPvV-VAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s 512 (636)
|+.++.+-++.+++ .++++. |..|+.. +..+-+.+.+++++.|.. +. ..... -.+|.++..+. .
T Consensus 158 ~~~~l~~~i~~~~~~~~~~l~gVv~n~~~--~~~~~~~~~~l~~~~g~~-vl-~~Ip~---------~~~v~~A~~~g-~ 223 (270)
T cd02040 158 AANNICKGILKYAKSGGVRLGGLICNSRN--TDREDELIDAFAKRLGTQ-MI-HFVPR---------DNVVQRAELRG-K 223 (270)
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEecCC--ChhHHHHHHHHHHHcCCC-eE-eecCC---------cHHHHHHHHcC-C
Confidence 45566666665543 567765 4456643 344445677777777874 32 22222 22444444332 2
Q ss_pred CCcccCCCCCCHHHHHHHHHH-HhCC-CceeeCHHHHHHHHH
Q 006673 513 PLKFLYPLDVSIKEKIDTIAR-SYGA-SGVEYSEEAEKQIEM 552 (636)
Q Consensus 513 ~fk~LY~~~~~L~eKIetIA~-IYGA-~~V~~S~~A~kqLk~ 552 (636)
+ -+.|..+.+..+.++.+++ +.+. .-+.+.+-+-+.++.
T Consensus 224 p-v~~~~p~~~aa~~~~~La~el~~~~~~~~~~~~~~~~~~~ 264 (270)
T cd02040 224 T-VIEYDPESKQADEYRELARKIVENKLLVIPTPLEMDELEE 264 (270)
T ss_pred c-eEEecCCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence 2 2345566677788899988 6553 224555555554443
No 37
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=91.01 E-value=0.15 Score=51.94 Aligned_cols=31 Identities=42% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.=|.||||||+.|+.+| ++.|+++.+.==.|
T Consensus 9 KGGVGKTT~a~nLA~~L-a~~G~rVLliD~Dp 39 (279)
T PRK13230 9 KGGIGKSTTVCNIAAAL-AESGKKVLVVGCDP 39 (279)
T ss_pred CCCCcHHHHHHHHHHHH-HhCCCEEEEEeeCC
Confidence 78999999999999999 69999976653343
No 38
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=90.94 E-value=0.16 Score=51.28 Aligned_cols=32 Identities=44% Similarity=0.369 Sum_probs=26.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.=|.||||+|+-|+.+| ++.|+++.+.==.|.
T Consensus 8 KGGvGKTT~a~nLA~~l-a~~G~rvlliD~Dpq 39 (267)
T cd02032 8 KGGIGKSTTSSNLSVAL-AKRGKKVLQIGCDPK 39 (267)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEecCCC
Confidence 78999999999999999 589999776544553
No 39
>PRK00698 tmk thymidylate kinase; Validated
Probab=90.92 E-value=0.27 Score=46.86 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=35.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
+|++|.|.|+ -|.||||.+--|.+.|+ ..| ..+...|+|+ +-.+|
T Consensus 2 ~~~~I~ieG~----~gsGKsT~~~~L~~~l~-~~~-~~~~~~~~p~-~~~~~ 46 (205)
T PRK00698 2 RGMFITIEGI----DGAGKSTQIELLKELLE-QQG-RDVVFTREPG-GTPLG 46 (205)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHHH-HcC-CceeEeeCCC-CChHH
Confidence 3889999996 69999999999999994 667 4467789998 43343
No 40
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=90.64 E-value=0.18 Score=50.94 Aligned_cols=27 Identities=44% Similarity=0.458 Sum_probs=23.8
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.=|.||||||+-|+.+| ++.|+++.+.
T Consensus 8 KGGVGKTT~~~nLA~~L-a~~g~rVLli 34 (268)
T TIGR01281 8 KGGIGKSTTSSNLSVAF-AKLGKRVLQI 34 (268)
T ss_pred CCcCcHHHHHHHHHHHH-HhCCCeEEEE
Confidence 77999999999999999 5889997654
No 41
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=90.43 E-value=0.33 Score=50.50 Aligned_cols=36 Identities=28% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.+.+.|++++ |-|+|||||+.-|+..| .+.|+++.+
T Consensus 70 ~~~~vi~l~G----~~G~GKTTt~akLA~~l-~~~g~~V~l 105 (272)
T TIGR00064 70 NKPNVILFVG----VNGVGKTTTIAKLANKL-KKQGKSVLL 105 (272)
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCEEEE
Confidence 3467888885 77999999999999999 577876543
No 42
>PLN02924 thymidylate kinase
Probab=90.35 E-value=0.34 Score=48.96 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCcc
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~F 118 (636)
++.|++|.+.++ -|.||||.+--|.+.|. ..|.++ ..+|||+-+...
T Consensus 13 ~~~g~~IviEGi----DGsGKsTq~~~L~~~l~-~~g~~v-~~~~ep~~~~~~ 59 (220)
T PLN02924 13 ESRGALIVLEGL----DRSGKSTQCAKLVSFLK-GLGVAA-ELWRFPDRTTSV 59 (220)
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCCc-eeeeCCCCCChH
Confidence 356999999998 59999999999999995 678875 688999754333
No 43
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=90.34 E-value=0.4 Score=50.11 Aligned_cols=51 Identities=25% Similarity=0.178 Sum_probs=37.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiK 121 (636)
+.||.|.|++ ..-|.||||++..|+.+| ++.|+++.+. .+.+++.-.||++
T Consensus 91 ~~~~vIav~~---~KGGvGkTT~a~nLA~~l-a~~g~~VlLvD~D~~~~~~~~~lg~~ 144 (322)
T TIGR03815 91 ARGVVVAVIG---GRGGAGASTLAAALALAA-ARHGLRTLLVDADPWGGGLDLLLGAE 144 (322)
T ss_pred CCceEEEEEc---CCCCCcHHHHHHHHHHHH-HhcCCCEEEEecCCCCCCeeeeecCC
Confidence 4689888876 567999999999999999 5889887654 2333333445554
No 44
>PRK10037 cell division protein; Provisional
Probab=90.31 E-value=0.26 Score=49.62 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.7
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE-e-eCCCCCCcccc
Q 006673 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC-L-RQPSQGPTFGI 120 (636)
Q Consensus 76 aitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~-l-RePSlGP~FGi 120 (636)
++.=..-|.||||+++.|+.+| ++.|+++.+. + .|.++.-.||.
T Consensus 5 av~n~KGGvGKTT~a~nLA~~L-a~~G~rVLlID~D~q~~~s~~~g~ 50 (250)
T PRK10037 5 GLQGVRGGVGTTSITAALAWSL-QMLGENVLVIDACPDNLLRLSFNV 50 (250)
T ss_pred EEecCCCCccHHHHHHHHHHHH-HhcCCcEEEEeCChhhhHHHHhCC
Confidence 4445678999999999999999 5899997654 2 23344444544
No 45
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=90.13 E-value=0.23 Score=46.50 Aligned_cols=34 Identities=41% Similarity=0.375 Sum_probs=26.4
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 78 TPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 78 tPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.-+.-|.||||+|..|+.+| ++.|+++.+.=-.|
T Consensus 4 ~~~kGG~GKTt~a~~la~~l-a~~g~~VlliD~D~ 37 (195)
T PF01656_consen 4 TSGKGGVGKTTIAANLAQAL-ARKGKKVLLIDLDP 37 (195)
T ss_dssp EESSTTSSHHHHHHHHHHHH-HHTTS-EEEEEEST
T ss_pred EcCCCCccHHHHHHHHHhcc-ccccccccccccCc
Confidence 34567999999999999999 57899987765443
No 46
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=89.89 E-value=0.28 Score=49.96 Aligned_cols=34 Identities=38% Similarity=0.333 Sum_probs=27.3
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCC
Q 006673 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSl 114 (636)
-.=|.|||||++.|+.+| ++.|+++.+.==.|-.
T Consensus 8 ~KGGVGKTT~~~nLA~~L-a~~G~rVLlID~Dpq~ 41 (274)
T PRK13235 8 GKGGIGKSTTTQNTVAGL-AEMGKKVMVVGCDPKA 41 (274)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCcEEEEecCCcc
Confidence 388999999999999999 6899997665334443
No 47
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=89.86 E-value=0.22 Score=50.49 Aligned_cols=27 Identities=48% Similarity=0.482 Sum_probs=23.4
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.=|.||||+|+.|+.+| ++.|+++.+.
T Consensus 8 KGGVGKTT~a~nLA~~L-a~~G~~Vlli 34 (275)
T TIGR01287 8 KGGIGKSTTTQNIAAAL-AEMGKKVMIV 34 (275)
T ss_pred CCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 78999999999999999 5889876543
No 48
>PRK11670 antiporter inner membrane protein; Provisional
Probab=89.52 E-value=0.39 Score=52.11 Aligned_cols=48 Identities=33% Similarity=0.325 Sum_probs=37.7
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiK 121 (636)
|.|.|+ -..-|+||||||+.|+.+| ++.|+++.+. ++-||+-=.||+.
T Consensus 108 ~vIaV~---S~KGGVGKTT~avNLA~aL-A~~G~rVlLID~D~qgps~~~~lg~~ 158 (369)
T PRK11670 108 NIIAVS---SGKGGVGKSSTAVNLALAL-AAEGAKVGILDADIYGPSIPTMLGAE 158 (369)
T ss_pred EEEEEe---CCCCCCCHHHHHHHHHHHH-HHCCCcEEEEeCCCCCCCcchhcCCc
Confidence 555554 5577999999999999999 6899998765 7778775567654
No 49
>PHA02518 ParA-like protein; Provisional
Probab=89.37 E-value=0.28 Score=46.93 Aligned_cols=29 Identities=28% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 79 PTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
-..=|.||||+++.|+.+| ++.|+++.+.
T Consensus 7 ~~KGGvGKTT~a~~la~~l-a~~g~~vlli 35 (211)
T PHA02518 7 NQKGGAGKTTVATNLASWL-HADGHKVLLV 35 (211)
T ss_pred cCCCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 3467899999999999999 5889887643
No 50
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=89.26 E-value=0.5 Score=47.78 Aligned_cols=44 Identities=32% Similarity=0.444 Sum_probs=38.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~ 117 (636)
+|++|.+-+| -|.||||.+--|.+-| ..-|. .++..|||+=+|+
T Consensus 2 ~g~fI~iEGi----DGaGKTT~~~~L~~~l-~~~g~-~v~~trEP~~~~i 45 (208)
T COG0125 2 KGMFIVIEGI----DGAGKTTQAELLKERL-EERGI-KVVLTREPGGTPI 45 (208)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHHH-HHcCC-eEEEEeCCCCChH
Confidence 5899999998 6999999999999999 57788 6788999986553
No 51
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=89.03 E-value=0.35 Score=49.23 Aligned_cols=89 Identities=19% Similarity=0.128 Sum_probs=54.2
Q ss_pred HhHHHHHHHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCC
Q 006673 436 CVNLARHIANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPL 514 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvV-VAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~f 514 (636)
..++.+.++.++.-++++. +.+|++..+.+.| .+.++.+..|.. + . |.+-.-.+|.++..+. .+
T Consensus 159 ~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~~~~--~~e~l~~~~~~~-v-l---------~~Ip~~~~v~~A~~~g-~p- 223 (273)
T PRK13232 159 ANNICKGLAKFAKGGARLGGIICNSRNVDGERE--LLEAFAKKLGSQ-L-I---------HFVPRDNIVQRAEINR-KT- 223 (273)
T ss_pred HHHHHHHHHHHhCCCCceeEEEEeCCCCCccHH--HHHHHHHHhCCC-e-E---------EECCCCHHHHHHHHcC-CC-
Confidence 3457777777766778774 7789886554333 344444455543 2 1 2355556677766542 22
Q ss_pred cccCCCCCCHHHHHHHHHH-HhCCCc
Q 006673 515 KFLYPLDVSIKEKIDTIAR-SYGASG 539 (636)
Q Consensus 515 k~LY~~~~~L~eKIetIA~-IYGA~~ 539 (636)
-+.|+.+.+..+.++.+|+ +-+...
T Consensus 224 v~~~~p~s~~a~~y~~La~el~~~~~ 249 (273)
T PRK13232 224 VIDFDPESNQAKEYLTLAHNVQNNDK 249 (273)
T ss_pred eEEeCCCChHHHHHHHHHHHHHhCCC
Confidence 2556667777888999999 776543
No 52
>PRK15452 putative protease; Provisional
Probab=88.95 E-value=2.6 Score=47.30 Aligned_cols=156 Identities=19% Similarity=0.180 Sum_probs=87.5
Q ss_pred cceEEEEeeehhhhhc--CCCCCccCCCCCccc-ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHH
Q 006673 393 PQCAVIVATIRALKMH--GGGPQVVAGKPLDHA-YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELN 469 (636)
Q Consensus 393 P~avVlVaTvRALK~H--GG~~~~~~g~pL~~~-l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~ 469 (636)
|...|-|-|.-+||.- .|+..+-.|.+--.. ....|. ..+.|++.++-.+++|+.+.|++|.++. ++|++
T Consensus 4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f-----~~edl~eav~~ah~~g~kvyvt~n~i~~--e~el~ 76 (443)
T PRK15452 4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEF-----NHENLALGINEAHALGKKFYVVVNIAPH--NAKLK 76 (443)
T ss_pred cEEEEECCCHHHHHHHHHCCCCEEEECCCccchhhhccCC-----CHHHHHHHHHHHHHcCCEEEEEecCcCC--HHHHH
Confidence 6666666666666633 455544443210000 000111 1234777888899999999999999988 46676
Q ss_pred HHHHHHH---HcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHHHhCCCceeeCHHH
Q 006673 470 AVRNAAM---AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEA 546 (636)
Q Consensus 470 ~v~e~c~---~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~IYGA~~V~~S~~A 546 (636)
.+.++.+ +.|+..+++++. |.+.++++. .+.-+++.-|..+-.=.+-++... =+|++.|++|.+-
T Consensus 77 ~~~~~l~~l~~~gvDgvIV~d~------G~l~~~ke~-----~p~l~ih~stqlni~N~~a~~f~~-~lG~~rvvLSrEL 144 (443)
T PRK15452 77 TFIRDLEPVIAMKPDALIMSDP------GLIMMVREH-----FPEMPIHLSVQANAVNWATVKFWQ-QMGLTRVILSREL 144 (443)
T ss_pred HHHHHHHHHHhCCCCEEEEcCH------HHHHHHHHh-----CCCCeEEEEecccCCCHHHHHHHH-HCCCcEEEECCcC
Confidence 6665554 788875555543 555555542 111122222322222222233322 4699999999887
Q ss_pred -HHHHHHHHhC---------CCCCCCeeEee
Q 006673 547 -EKQIEMYTGQ---------GFSGLPICMAK 567 (636)
Q Consensus 547 -~kqLk~ie~l---------G~~~LPVCmAK 567 (636)
.++|+.+.+. -+|.+|++.+.
T Consensus 145 sl~EI~~i~~~~~~~elEvfVHGalc~m~Sg 175 (443)
T PRK15452 145 SLEEIEEIRQQCPDMELEVFVHGALCMAYSG 175 (443)
T ss_pred CHHHHHHHHhhCCCCCEEEEEEccchheeeC
Confidence 5788887632 24566665544
No 53
>PLN02591 tryptophan synthase
Probab=88.95 E-value=4.2 Score=42.35 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=87.1
Q ss_pred CCCCCccCCCCCcc------cccccCHHHHHHHHhHHHH---HHHHHhh-cCCcEEE--EecCCCCCCHHHHHHHHHHHH
Q 006673 409 GGGPQVVAGKPLDH------AYLNENVALVEAGCVNLAR---HIANTKA-YGANVVV--AVNMFATDSKAELNAVRNAAM 476 (636)
Q Consensus 409 GG~~~~~~g~pL~~------~l~~eNleaL~~G~~NL~k---HIeNi~~-fGvPvVV--AINrF~tDT~aEI~~v~e~c~ 476 (636)
+|++-.++|-|-.+ -..+-+..||+.|+ |+.+ -++++|+ +.+|+|+ -.|-+- .-=++...+.|+
T Consensus 28 ~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~-~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~---~~G~~~F~~~~~ 103 (250)
T PLN02591 28 CGADVIELGVPYSDPLADGPVIQAAATRALEKGT-TLDSVISMLKEVAPQLSCPIVLFTYYNPIL---KRGIDKFMATIK 103 (250)
T ss_pred CCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcCCCCCEEEEecccHHH---HhHHHHHHHHHH
Confidence 67777777765544 23456788898886 4444 4444543 6788653 234321 113455677889
Q ss_pred HcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCH
Q 006673 477 AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSE 544 (636)
Q Consensus 477 ~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IY-----GA~~V--~~S~ 544 (636)
++|+..+.+-+.= .|-++.+.+.|++..-.+=++...+.+ ++.|+.||+ || |..+. .+.+
T Consensus 104 ~aGv~GviipDLP-------~ee~~~~~~~~~~~gl~~I~lv~Ptt~-~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~ 175 (250)
T PLN02591 104 EAGVHGLVVPDLP-------LEETEALRAEAAKNGIELVLLTTPTTP-TERMKAIAEASEGFVYLVSSTGVTGARASVSG 175 (250)
T ss_pred HcCCCEEEeCCCC-------HHHHHHHHHHHHHcCCeEEEEeCCCCC-HHHHHHHHHhCCCcEEEeeCCCCcCCCcCCch
Confidence 9999877776541 355667777776533345566655555 445555554 55 23333 3446
Q ss_pred HHHHHHHHHHhCCCCCCCeeE
Q 006673 545 EAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 545 ~A~kqLk~ie~lG~~~LPVCm 565 (636)
..++-++++++. .++|||+
T Consensus 176 ~~~~~i~~vk~~--~~~Pv~v 194 (250)
T PLN02591 176 RVESLLQELKEV--TDKPVAV 194 (250)
T ss_pred hHHHHHHHHHhc--CCCceEE
Confidence 666778889884 6899997
No 54
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.72 E-value=0.45 Score=49.40 Aligned_cols=52 Identities=27% Similarity=0.300 Sum_probs=37.8
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~h 147 (636)
|.|.|.++ .=|.||||+|..|+.+| .++|+++.+. -.-|-.-..|||.=|+.
T Consensus 2 ~~iai~s~---kGGvG~TTltAnLA~aL-~~~G~~VlaI----------------------D~dpqN~Lrlhfg~~~~ 53 (243)
T PF06564_consen 2 KVIAIVSP---KGGVGKTTLTANLAWAL-ARLGESVLAI----------------------DLDPQNLLRLHFGLPLD 53 (243)
T ss_pred cEEEEecC---CCCCCHHHHHHHHHHHH-HHCCCcEEEE----------------------eCCcHHHHHHhcCCCCc
Confidence 34555544 57999999999999999 6999986543 33455566677776654
No 55
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=88.69 E-value=0.19 Score=52.77 Aligned_cols=35 Identities=49% Similarity=0.472 Sum_probs=27.0
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCC
Q 006673 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQG 115 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlG 115 (636)
-.=|.||||||+=|+-|| .+.|+++-+. +||||+.
T Consensus 8 gKGGvGKSTva~~lA~aL-a~~G~kVg~lD~Di~q~S~~ 45 (261)
T PF09140_consen 8 GKGGVGKSTVAVNLAVAL-ARMGKKVGLLDLDIRQPSLP 45 (261)
T ss_dssp SSTTTTHHHHHHHHHHHH-HCTT--EEEEE--TTT-HHH
T ss_pred CCCCCcHHHHHHHHHHHH-HHCCCeEEEEecCCCCCCHH
Confidence 467999999999999999 6999997654 6888775
No 56
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=88.60 E-value=0.38 Score=50.18 Aligned_cols=28 Identities=32% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
-.-|.|||||++-|+.+| ++.|+++.+.
T Consensus 11 ~KGGvGKTt~~~nLa~~l-a~~g~kVLli 38 (295)
T PRK13234 11 GKGGIGKSTTSQNTLAAL-VEMGQKILIV 38 (295)
T ss_pred CCCCccHHHHHHHHHHHH-HHCCCeEEEE
Confidence 688999999999999999 6999997765
No 57
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=88.45 E-value=0.67 Score=44.20 Aligned_cols=40 Identities=33% Similarity=0.424 Sum_probs=34.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSl 114 (636)
|++|.++|+ -|.||||.+--|.+.|+ ..|.+. ..+++|+-
T Consensus 3 g~~IvieG~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~~ 42 (195)
T TIGR00041 3 GMFIVIEGI----DGAGKTTQANLLKKLLQ-ENGYDV-LFTREPGG 42 (195)
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCC
Confidence 899999997 59999999999999995 568775 56899863
No 58
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.32 E-value=0.5 Score=45.52 Aligned_cols=45 Identities=33% Similarity=0.460 Sum_probs=35.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
+.|++|.++| |.|.||||++.-|.+-+. .+.......-|+|..|-
T Consensus 3 ~~g~~i~i~G----~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 3 RRGLLIVLSG----PSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCC
Confidence 4699999999 679999999988887763 55555556778988764
No 59
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=88.31 E-value=0.34 Score=47.54 Aligned_cols=30 Identities=33% Similarity=0.285 Sum_probs=25.4
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
|+.|-.|.|||++|.||.++| .+.|+++..
T Consensus 4 I~~t~t~~GKT~vs~~L~~~l-~~~g~~v~~ 33 (222)
T PRK00090 4 VTGTDTDVGKTVVTAALAQAL-REAGYSVAG 33 (222)
T ss_pred EEeCCCCcCHHHHHHHHHHHH-HHcCCceEE
Confidence 456778999999999999999 688998643
No 60
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=88.16 E-value=0.42 Score=46.99 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.8
Q ss_pred CCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 79 PTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 79 PTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
-..-|+||||+++.|+.+| ++.|+++.+
T Consensus 8 s~KGGvGKTt~a~nla~~l-a~~g~~Vll 35 (246)
T TIGR03371 8 GVKGGVGKTTLTANLASAL-KLLGEPVLA 35 (246)
T ss_pred eCCCCccHHHHHHHHHHHH-HhCCCcEEE
Confidence 4567999999999999999 578988654
No 61
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=87.97 E-value=0.36 Score=50.37 Aligned_cols=31 Identities=42% Similarity=0.374 Sum_probs=25.4
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.=|.|||||++-|+.+| ++.|+++.+.==.|
T Consensus 8 KGGVGKTTta~nLA~~L-a~~G~rVLlID~Dp 38 (290)
T CHL00072 8 KGGIGKSTTSCNISIAL-ARRGKKVLQIGCDP 38 (290)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCeEEEEeccC
Confidence 67999999999999999 58999966543333
No 62
>PRK13973 thymidylate kinase; Provisional
Probab=87.90 E-value=0.77 Score=45.49 Aligned_cols=42 Identities=31% Similarity=0.410 Sum_probs=35.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
|++|.+-|+ -|.||||.+-.|.+.|. ..|.+ +...|||+..|
T Consensus 3 g~~IviEG~----dGsGKtTq~~~l~~~l~-~~g~~-~~~~~~p~~~~ 44 (213)
T PRK13973 3 GRFITFEGG----EGAGKSTQIRLLAERLR-AAGYD-VLVTREPGGSP 44 (213)
T ss_pred ceEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEECCCCCc
Confidence 899999997 59999999999999995 66876 57789998544
No 63
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=87.54 E-value=0.87 Score=42.61 Aligned_cols=41 Identities=32% Similarity=0.436 Sum_probs=33.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
++|.+.|+ -|.||||.+--|++.|+ ..|.++ +.+++|+-++
T Consensus 1 ~~I~ieG~----~GsGKtT~~~~L~~~l~-~~g~~v-~~~~~~~~~~ 41 (200)
T cd01672 1 MFIVFEGI----DGAGKTTLIELLAERLE-ARGYEV-VLTREPGGTP 41 (200)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE-EEEeCCCCCc
Confidence 46777774 69999999999999995 678885 7899998543
No 64
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=87.19 E-value=0.54 Score=49.33 Aligned_cols=34 Identities=32% Similarity=0.381 Sum_probs=28.2
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
.-|+||||||+.|+.+| ++.|+++.+.==.|.++
T Consensus 8 KGGvGKTT~a~nLA~~L-a~~g~rVLlID~Dpq~~ 41 (296)
T TIGR02016 8 KGGSGKSFTTTNLSHMM-AEMGKRVLQLGCDPKHD 41 (296)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEEecCCCC
Confidence 78999999999999999 58899987765555443
No 65
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=86.56 E-value=0.58 Score=47.53 Aligned_cols=27 Identities=48% Similarity=0.495 Sum_probs=23.2
Q ss_pred CCCCCCcchhHHHHHHHHhhh-cCCcEEE
Q 006673 80 TPLGEGKSTTTVGLCQALGAF-LDKKVVT 107 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~-lg~~~~~ 107 (636)
-.=|.|||||++-|+-+| ++ .|+++.+
T Consensus 9 ~KGGVGKTT~a~nLA~~L-a~~~G~rvLl 36 (275)
T PRK13233 9 GKGGIGKSTTTQNTAAAM-AYFHDKKVFI 36 (275)
T ss_pred cCCCCcHHHHHHHHHHHH-HHhcCCeEEE
Confidence 489999999999999999 56 5998554
No 66
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=86.54 E-value=0.66 Score=44.03 Aligned_cols=72 Identities=26% Similarity=0.429 Sum_probs=47.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccc-cccch
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL-HLTGD 145 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNL-HfTGD 145 (636)
+.|++|++.+ +.|.||||.+.+++++|+ . .++=--|+|-+.--=.. ....+ || |
T Consensus 20 ~~~~~i~l~G----~lGaGKTtl~~~l~~~lg-~---------~~~v~SPTf~lv~~Y~~---------~~~~l~H~--D 74 (133)
T TIGR00150 20 DFGTVVLLKG----DLGAGKTTLVQGLLQGLG-I---------QGNVTSPTFTLVNEYNE---------GNLMVYHF--D 74 (133)
T ss_pred CCCCEEEEEc----CCCCCHHHHHHHHHHHcC-C---------CCcccCCCeeeeeeccc---------CCCcEEEe--c
Confidence 4588999998 689999999999999984 2 12334577877543221 11122 44 6
Q ss_pred hhHHHHHHhHHHHHHHhh
Q 006673 146 IHAITAANNLLAAAIDTR 163 (636)
Q Consensus 146 ~hAItaA~NLlaA~idn~ 163 (636)
+..+.....+..--+|-.
T Consensus 75 lYRl~~~~e~~~lg~ee~ 92 (133)
T TIGR00150 75 LYRLADPEELELMGLEDY 92 (133)
T ss_pred hhhcCChhHHHHCChHHh
Confidence 777776666655555543
No 67
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=86.45 E-value=0.64 Score=46.08 Aligned_cols=27 Identities=33% Similarity=0.265 Sum_probs=24.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.-|+||||++.+|+..+ ++.|+++.+.
T Consensus 7 ~~g~Gkt~~~~~la~~~-a~~g~~~~l~ 33 (217)
T cd02035 7 KGGVGKTTIAAATAVRL-AEEGKKVLLV 33 (217)
T ss_pred CCCchHHHHHHHHHHHH-HHCCCcEEEE
Confidence 56999999999999999 5889998776
No 68
>PRK13768 GTPase; Provisional
Probab=86.40 E-value=0.91 Score=46.51 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=51.3
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC--CC-CcccCCCCCCH
Q 006673 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT--QP-LKFLYPLDVSI 524 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~--s~-fk~LY~~~~~L 524 (636)
++++|+++++|+-..-+++|.+.+.++.++.- ..+.+.=..+|.= .+|-+++++.+++-. .. |.+--.....+
T Consensus 160 ~~~~~~i~v~nK~D~~~~~~~~~~~~~l~~~~---~~~~~l~~~~~~~-~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl 235 (253)
T PRK13768 160 RLGLPQIPVLNKADLLSEEELERILKWLEDPE---YLLEELKLEKGLQ-GLLSLELLRALEETGLPVRVIPVSAKTGEGF 235 (253)
T ss_pred HcCCCEEEEEEhHhhcCchhHHHHHHHHhCHH---HHHHHHhcccchH-HHHHHHHHHHHHHHCCCCcEEEEECCCCcCH
Confidence 47999999999998888888877777655100 0000000011111 556666666555421 12 22222345788
Q ss_pred HHHHHHHHH-HhCCCc
Q 006673 525 KEKIDTIAR-SYGASG 539 (636)
Q Consensus 525 ~eKIetIA~-IYGA~~ 539 (636)
++=++.|.+ .|+..+
T Consensus 236 ~~L~~~I~~~l~~~~~ 251 (253)
T PRK13768 236 DELYAAIQEVFCGGED 251 (253)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 888888888 887654
No 69
>PRK10818 cell division inhibitor MinD; Provisional
Probab=86.16 E-value=0.67 Score=46.74 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=28.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+|.|-|+ -..-|.||||+++.|+-+| ++.|+++++.
T Consensus 2 ~kviav~---s~KGGvGKTt~a~nlA~~l-a~~g~~vllv 37 (270)
T PRK10818 2 ARIIVVT---SGKGGVGKTTSSAAIATGL-AQKGKKTVVI 37 (270)
T ss_pred ceEEEEE---eCCCCCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4555555 4567999999999999999 5889987665
No 70
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=86.05 E-value=0.76 Score=52.23 Aligned_cols=42 Identities=26% Similarity=0.521 Sum_probs=32.5
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 65 ~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.+|+| +||||+ |.|+|||||--.+.+-|+ .-.++ |+++=.|=
T Consensus 255 ~~p~G-liLvTG----PTGSGKTTTLY~~L~~ln-~~~~n-I~TiEDPV 296 (500)
T COG2804 255 NRPQG-LILVTG----PTGSGKTTTLYAALSELN-TPERN-IITIEDPV 296 (500)
T ss_pred hCCCe-EEEEeC----CCCCCHHHHHHHHHHHhc-CCCce-EEEeeCCe
Confidence 34666 899998 569999999998888884 44444 88887763
No 71
>PRK04296 thymidine kinase; Provisional
Probab=86.03 E-value=0.95 Score=44.23 Aligned_cols=45 Identities=20% Similarity=0.239 Sum_probs=34.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCcccc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGi 120 (636)
|+++|+|+ |.|.||||.+++++..+. .-|+++.+. -|++.+-+|.
T Consensus 2 g~i~litG----~~GsGKTT~~l~~~~~~~-~~g~~v~i~--k~~~d~~~~~ 46 (190)
T PRK04296 2 AKLEFIYG----AMNSGKSTELLQRAYNYE-ERGMKVLVF--KPAIDDRYGE 46 (190)
T ss_pred cEEEEEEC----CCCCHHHHHHHHHHHHHH-HcCCeEEEE--eccccccccC
Confidence 77889987 679999999999999883 558776654 4666655543
No 72
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=85.99 E-value=5.5 Score=41.61 Aligned_cols=153 Identities=15% Similarity=0.236 Sum_probs=96.9
Q ss_pred eehhhhhc--CCCCCccCCCCCcc------cccccCHHHHHHHHh--HHHHHHHHHh-h-cCCcEEEEe--cCCCCCCHH
Q 006673 401 TIRALKMH--GGGPQVVAGKPLDH------AYLNENVALVEAGCV--NLARHIANTK-A-YGANVVVAV--NMFATDSKA 466 (636)
Q Consensus 401 TvRALK~H--GG~~~~~~g~pL~~------~l~~eNleaL~~G~~--NL~kHIeNi~-~-fGvPvVVAI--NrF~tDT~a 466 (636)
|++.++.- +|+.-.++|-|..+ -..+-+..||+.|+. .+..-++.+| + +.+|+|+-- |-+-.=
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~--- 104 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQY--- 104 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhc---
Confidence 45555533 78888788876644 244568889999973 3355566666 3 688987544 653321
Q ss_pred HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHH--HHHHHHHH--Hh-----CC
Q 006673 467 ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIK--EKIDTIAR--SY-----GA 537 (636)
Q Consensus 467 EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~--eKIetIA~--IY-----GA 537 (636)
-++...+.|+++|+..+.+.+. -.|-++.+++.|.+..-.+=++...+.|-+ ++|...+. || |.
T Consensus 105 G~e~f~~~~~~aGvdGviipDL-------p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 105 GVERFAADAAEAGVDGLIIPDL-------PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred CHHHHHHHHHHcCCcEEEECCC-------CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 3445678889999987777654 235677777777653223335555555532 34444444 66 45
Q ss_pred Cce--eeCHHHHHHHHHHHhCCCCCCCeeE
Q 006673 538 SGV--EYSEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 538 ~~V--~~S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
.++ .+++...+.++++++. .+.|||+
T Consensus 178 TG~~~~~~~~~~~~i~~vk~~--~~~pv~v 205 (258)
T PRK13111 178 TGARSADAADLAELVARLKAH--TDLPVAV 205 (258)
T ss_pred CCcccCCCccHHHHHHHHHhc--CCCcEEE
Confidence 555 5667788899999985 4789987
No 73
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=85.98 E-value=0.91 Score=48.44 Aligned_cols=36 Identities=31% Similarity=0.341 Sum_probs=29.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.|++|++.+ |-|+|||||+.-|+-.+ ..-|+++.+
T Consensus 112 ~~~~vi~lvG----pnGsGKTTt~~kLA~~l-~~~g~~V~L 147 (318)
T PRK10416 112 KKPFVILVVG----VNGVGKTTTIGKLAHKY-KAQGKKVLL 147 (318)
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHH-HhcCCeEEE
Confidence 3588999988 77999999999999999 466776554
No 74
>PRK10646 ADP-binding protein; Provisional
Probab=85.92 E-value=0.75 Score=44.72 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=24.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|.+|+..+ ++|.||||.+.||+++|+
T Consensus 26 ~~g~vi~L~G----dLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 26 DGATVIYLYG----DLGAGKTTFSRGFLQALG 53 (153)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4588999988 699999999999999995
No 75
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=85.86 E-value=0.6 Score=45.15 Aligned_cols=32 Identities=38% Similarity=0.451 Sum_probs=25.6
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
|+||-.|.|||+++.||.++| .+.|.++. ..|
T Consensus 5 I~~t~t~vGKT~vslgL~~~l-~~~g~~v~-~~K 36 (199)
T PF13500_consen 5 ITGTDTGVGKTVVSLGLARAL-RRRGIKVG-YFK 36 (199)
T ss_dssp EEESSSSSSHHHHHHHHHHHH-HHTTSEEE-EEE
T ss_pred EEeCCCCCCHHHHHHHHHHHH-HhCCCceE-EEe
Confidence 457888999999999999999 57777743 444
No 76
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=85.81 E-value=7.2 Score=40.88 Aligned_cols=144 Identities=19% Similarity=0.261 Sum_probs=90.9
Q ss_pred CCCCCccCCCCCcc------cccccCHHHHHHHH--hHHHHHHHHHhh-cCCcEEE--EecCCCCCCHHHHHHHHHHHHH
Q 006673 409 GGGPQVVAGKPLDH------AYLNENVALVEAGC--VNLARHIANTKA-YGANVVV--AVNMFATDSKAELNAVRNAAMA 477 (636)
Q Consensus 409 GG~~~~~~g~pL~~------~l~~eNleaL~~G~--~NL~kHIeNi~~-fGvPvVV--AINrF~tDT~aEI~~v~e~c~~ 477 (636)
+|++-.++|-|-.+ -..+.+..||+.|+ ..+..-++.+|+ +.+|+|+ -.|-+-. -=++...+.|++
T Consensus 41 ~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~---~G~e~F~~~~~~ 117 (263)
T CHL00200 41 KGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH---YGINKFIKKISQ 117 (263)
T ss_pred CCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH---hCHHHHHHHHHH
Confidence 67777777765544 23456788888886 234444555554 6888653 2353221 123445677888
Q ss_pred cCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCHH
Q 006673 478 AGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSEE 545 (636)
Q Consensus 478 ~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IY-----GA~~V--~~S~~ 545 (636)
+|+..+.+-+.= .|-++.+.+.|.+..-.+-++...+.| .+.|+.|++ || |..|. .+.+.
T Consensus 118 aGvdgviipDLP-------~ee~~~~~~~~~~~gi~~I~lv~PtT~-~eri~~i~~~a~gFIY~vS~~GvTG~~~~~~~~ 189 (263)
T CHL00200 118 AGVKGLIIPDLP-------YEESDYLISVCNLYNIELILLIAPTSS-KSRIQKIARAAPGCIYLVSTTGVTGLKTELDKK 189 (263)
T ss_pred cCCeEEEecCCC-------HHHHHHHHHHHHHcCCCEEEEECCCCC-HHHHHHHHHhCCCcEEEEcCCCCCCCCccccHH
Confidence 999866665541 244777788886543445677777765 556777766 34 45555 56677
Q ss_pred HHHHHHHHHhCCCCCCCeeE
Q 006673 546 AEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 546 A~kqLk~ie~lG~~~LPVCm 565 (636)
.++-++++++ +-++|||+
T Consensus 190 ~~~~i~~ir~--~t~~Pi~v 207 (263)
T CHL00200 190 LKKLIETIKK--MTNKPIIL 207 (263)
T ss_pred HHHHHHHHHH--hcCCCEEE
Confidence 8888888888 45899997
No 77
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=85.33 E-value=0.65 Score=43.89 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=31.5
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEE---EeeCCCCCCcccccc
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVT---CLRQPSQGPTFGIKG 122 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~---~lRePSlGP~FGiKG 122 (636)
++-..-|+||||++.-|+.+| +++.+ -+|.|++--.||+++
T Consensus 4 v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~ 47 (179)
T cd03110 4 VISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEI 47 (179)
T ss_pred EEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCc
Confidence 344567999999999999988 45443 268888888888876
No 78
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=84.96 E-value=12 Score=38.95 Aligned_cols=154 Identities=11% Similarity=0.173 Sum_probs=92.2
Q ss_pred eehhhhh--cCCCCCccCCCCCcc------cccccCHHHHHHHH--hHHHHHHHHHhh--cCCcEEEEecCCCCCCHHHH
Q 006673 401 TIRALKM--HGGGPQVVAGKPLDH------AYLNENVALVEAGC--VNLARHIANTKA--YGANVVVAVNMFATDSKAEL 468 (636)
Q Consensus 401 TvRALK~--HGG~~~~~~g~pL~~------~l~~eNleaL~~G~--~NL~kHIeNi~~--fGvPvVVAINrF~tDT~aEI 468 (636)
|++.++. .+|+.-.++|-|..+ -..+-+..||+.|+ ..+...++.+++ ..+|+| ..=.+..=-.-=+
T Consensus 26 ~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~~G~ 104 (256)
T TIGR00262 26 SLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFRKGV 104 (256)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhhhhH
Confidence 4454443 378887788866644 23445678888886 245566777775 478866 3322221000011
Q ss_pred HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----H-----hCCC
Q 006673 469 NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----S-----YGAS 538 (636)
Q Consensus 469 ~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----I-----YGA~ 538 (636)
+...+.|+++|+..+.+-+. ..+-.+.+++.|.+..-.+-++...+.|.+ .|+.|++ | +|..
T Consensus 105 e~f~~~~~~aGvdgviipDl-------p~ee~~~~~~~~~~~gl~~i~lv~P~T~~e-ri~~i~~~~~gfiy~vs~~G~T 176 (256)
T TIGR00262 105 EEFYAKCKEVGVDGVLVADL-------PLEESGDLVEAAKKHGVKPIFLVAPNADDE-RLKQIAEKSQGFVYLVSRAGVT 176 (256)
T ss_pred HHHHHHHHHcCCCEEEECCC-------ChHHHHHHHHHHHHCCCcEEEEECCCCCHH-HHHHHHHhCCCCEEEEECCCCC
Confidence 23456677899975555432 234566777777653233446667777754 4555554 3 3445
Q ss_pred cee--eCHHHHHHHHHHHhCCCCCCCeeE
Q 006673 539 GVE--YSEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 539 ~V~--~S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+.. |.+...+.+++++++ -+.|||+
T Consensus 177 G~~~~~~~~~~~~i~~lr~~--~~~pi~v 203 (256)
T TIGR00262 177 GARNRAASALNELVKRLKAY--SAKPVLV 203 (256)
T ss_pred CCcccCChhHHHHHHHHHhh--cCCCEEE
Confidence 654 889999999999996 3568886
No 79
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=84.95 E-value=0.95 Score=48.14 Aligned_cols=170 Identities=19% Similarity=0.232 Sum_probs=98.0
Q ss_pred HHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeec-CceeEEcccCccccccCCchHH
Q 006673 273 VLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLE-GTPVLVHAGPFANIAHGNSSIV 351 (636)
Q Consensus 273 Il~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlE-gtPa~VHgGPFANIAhG~nSvi 351 (636)
+.|=-+-++.-+.++|+|.-+.+..|.|+.-..|++-=..++=|-+++|-+- .| .-.++|-+-|= -||+ |+
T Consensus 109 ~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~a---~E~~~~~IIDsaaG----~gCp-Vi 180 (284)
T COG1149 109 IVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHA---KELADLLIIDSAAG----TGCP-VI 180 (284)
T ss_pred eeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHhh---hhhcceeEEecCCC----CCCh-HH
Confidence 3444455567788999999999988879988888875544443333332110 01 22233332221 1333 22
Q ss_pred HHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHH
Q 006673 352 ADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVAL 431 (636)
Q Consensus 352 At~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNlea 431 (636)
|. ++ | -|++++|+ -| =
T Consensus 181 ~s---l~--------------~-------------------aD~ai~VT----------EP-------T----------- 196 (284)
T COG1149 181 AS---LK--------------G-------------------ADLAILVT----------EP-------T----------- 196 (284)
T ss_pred Hh---hc--------------c-------------------CCEEEEEe----------cC-------C-----------
Confidence 11 11 1 45677877 11 1
Q ss_pred HHHHHhHHHHHHHHHhhcCCcEEEEecCC-CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 432 VEAGCVNLARHIANTKAYGANVVVAVNMF-ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 432 L~~G~~NL~kHIeNi~~fGvPvVVAINrF-~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
-.|+--|+|-+|-++.||+|+++.|||+ +.|+ | |+++|++.|++ +...=-| -+.+.++..+.
T Consensus 197 -p~glhD~kr~~el~~~f~ip~~iViNr~~~g~s--~---ie~~~~e~gi~-il~~IPy----------d~~i~~~~~~g 259 (284)
T COG1149 197 -PFGLHDLKRALELVEHFGIPTGIVINRYNLGDS--E---IEEYCEEEGIP-ILGEIPY----------DKDIPEAYVNG 259 (284)
T ss_pred -ccchhHHHHHHHHHHHhCCceEEEEecCCCCch--H---HHHHHHHcCCC-eeEECCc----------chhHHHHHhCC
Confidence 1356679999999999999999999999 2333 4 57999999997 5422222 23555555432
Q ss_pred CCCCcccCCCCCCHHHHHHHHHH-Hh
Q 006673 511 TQPLKFLYPLDVSIKEKIDTIAR-SY 535 (636)
Q Consensus 511 ~s~fk~LY~~~~~L~eKIetIA~-IY 535 (636)
+++-..++.-.+++..++. +|
T Consensus 260 ----~~~~~~~~k~~~~~~~~~~~~~ 281 (284)
T COG1149 260 ----EPFVEPDSKEAEAILEEAEKLK 281 (284)
T ss_pred ----CccccccchHHHHHHHHHHHHH
Confidence 2222244455555555554 44
No 80
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=84.94 E-value=0.59 Score=44.52 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCc
Q 006673 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (636)
Q Consensus 82 ~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~ 117 (636)
-|.||||.+--|.++| ...|.+ +...++|+-.|+
T Consensus 5 DGsGKtT~~~~L~~~l-~~~~~~-~~~~~~~~~~~~ 38 (186)
T PF02223_consen 5 DGSGKTTQIRLLAEAL-KEKGYK-VIITFPPGSTPI 38 (186)
T ss_dssp TTSSHHHHHHHHHHHH-HHTTEE-EEEEESSTSSHH
T ss_pred CCCCHHHHHHHHHHHH-HHcCCc-ccccCCCCCChH
Confidence 5999999999999999 588988 888999987664
No 81
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=84.81 E-value=0.93 Score=44.03 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=36.5
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aV 503 (636)
...++.+|+|+||++|+..-=.+..+. ...++.+.+|++ ++. +=+..|+|-.+|-+++
T Consensus 98 ~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~p-vi~--~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 98 TLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVP-VIP--VSARTGEGIDELKDAI 156 (156)
T ss_dssp HHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS--EEE--EBTTTTBTHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCC-EEE--EEeCCCcCHHHHHhhC
Confidence 345667999999999997321111111 144556678997 443 3468899988887764
No 82
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=84.75 E-value=0.81 Score=40.66 Aligned_cols=37 Identities=22% Similarity=0.158 Sum_probs=27.9
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhc-CCcEEEEeeCCC
Q 006673 76 GITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQPS 113 (636)
Q Consensus 76 aitPTP~GEGKtTttIGL~~aL~~~l-g~~~~~~lRePS 113 (636)
++.-+.-|+||||++..|+-++ .+. |+++.+.==.|.
T Consensus 3 ~~~~~kgg~gkt~~~~~la~~~-~~~~~~~~~l~d~d~~ 40 (106)
T cd03111 3 AFIGAKGGVGATTLAANLAVAL-AKEAGRRVLLVDLDLQ 40 (106)
T ss_pred EEECCCCCCcHHHHHHHHHHHH-HhcCCCcEEEEECCCC
Confidence 3455678999999999999999 577 888766523333
No 83
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=84.46 E-value=1 Score=48.48 Aligned_cols=68 Identities=29% Similarity=0.288 Sum_probs=52.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC--CCCCccccccCCCCCCceeeecCccccccccchhh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP--SQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP--SlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~h 147 (636)
++|++|+- -|.||||++.+++=-+ +..|+++.+.-=.| |+|.+|+++= .-|.+
T Consensus 3 riv~f~GK----GGVGKTT~aaA~A~~l-A~~g~kvLlvStDPAhsL~d~f~~el--------------------g~~~~ 57 (322)
T COG0003 3 RIVFFTGK----GGVGKTTIAAATAVKL-AESGKKVLLVSTDPAHSLGDVFDLEL--------------------GHDPR 57 (322)
T ss_pred EEEEEecC----CcccHHHHHHHHHHHH-HHcCCcEEEEEeCCCCchHhhhcccc--------------------CCchh
Confidence 58888885 6999999999999999 57898866666776 7787776532 35777
Q ss_pred HHHHHHhHHHHHHHhhh
Q 006673 148 AITAANNLLAAAIDTRI 164 (636)
Q Consensus 148 AItaA~NLlaA~idn~i 164 (636)
+|+ .||-+..||...
T Consensus 58 ~I~--~nL~a~eiD~~~ 72 (322)
T COG0003 58 KVG--PNLDALELDPEK 72 (322)
T ss_pred hcC--CCCceeeecHHH
Confidence 777 888777777543
No 84
>PRK13236 nitrogenase reductase; Reviewed
Probab=84.40 E-value=0.71 Score=48.17 Aligned_cols=31 Identities=29% Similarity=0.327 Sum_probs=26.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.-|.|||||++-|+.+| ++.|+++.+.==.|
T Consensus 14 KGGVGKTt~a~NLA~~L-a~~G~rVLliD~D~ 44 (296)
T PRK13236 14 KGGIGKSTTSQNTLAAM-AEMGQRILIVGCDP 44 (296)
T ss_pred CCcCCHHHHHHHHHHHH-HHCCCcEEEEEccC
Confidence 78999999999999999 57899987653343
No 85
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=83.98 E-value=1 Score=43.83 Aligned_cols=28 Identities=39% Similarity=0.701 Sum_probs=25.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|.+|+..+ ++|.||||.+.|+++||+
T Consensus 23 ~~g~Vv~L~G----dLGAGKTtf~rgi~~~Lg 50 (149)
T COG0802 23 KAGDVVLLSG----DLGAGKTTLVRGIAKGLG 50 (149)
T ss_pred CCCCEEEEEc----CCcCChHHHHHHHHHHcC
Confidence 4688999988 699999999999999995
No 86
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=83.86 E-value=5.1 Score=46.19 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=61.3
Q ss_pred cchhccccccccCCCC-cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCc-EE
Q 006673 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (636)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvP-vV 454 (636)
|-|+|. +...+|+. .|++++|..+.- |. +.....|+..++.+|+| +|
T Consensus 59 Ghe~f~--~~~~~g~~~aD~aILVVDa~~-----G~------------------------~~qT~ehl~il~~lgi~~iI 107 (581)
T TIGR00475 59 GHEKFI--SNAIAGGGGIDAALLVVDADE-----GV------------------------MTQTGEHLAVLDLLGIPHTI 107 (581)
T ss_pred CHHHHH--HHHHhhhccCCEEEEEEECCC-----CC------------------------cHHHHHHHHHHHHcCCCeEE
Confidence 445664 44455544 789999875541 11 11344677788889999 99
Q ss_pred EEecCCCCCCHHHHHH----HHHHHHHc----CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 455 VAVNMFATDSKAELNA----VRNAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 455 VAINrF~tDT~aEI~~----v~e~c~~~----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
|++|+-..-++++++. ++++++.. +++ ++.++ +.=|+|-.+|-+.+.+.++.
T Consensus 108 VVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~-ii~vS--A~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 108 VVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK-IFKTS--AKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc-EEEEe--CCCCCCchhHHHHHHHHHHh
Confidence 9999987655665544 44444443 344 44433 34467777887777666653
No 87
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=83.60 E-value=0.86 Score=42.89 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=31.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
||+|++.+ |.|.||||++.-|.+-+. ......-.+.|+|..|.
T Consensus 1 g~ii~l~G----~~GsGKsTl~~~L~~~~~-~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 1 GLLIVISG----PSGVGKSTLVKALLEEDP-NLKFSISATTRKPRPGE 43 (180)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHccCc-cccccccceeeCCCCCC
Confidence 68899988 779999998777766552 34444445678887664
No 88
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=83.52 E-value=2.9 Score=42.13 Aligned_cols=38 Identities=16% Similarity=0.088 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHH
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAA 475 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c 475 (636)
.-.+|++-++.+|+|+||++|+..--.+++++...+..
T Consensus 126 ~d~~~l~~l~~~~ip~ivvvNK~D~~~~~~~~~~~~~l 163 (224)
T cd04165 126 MTKEHLGLALALNIPVFVVVTKIDLAPANILQETLKDL 163 (224)
T ss_pred HHHHHHHHHHHcCCCEEEEEECccccCHHHHHHHHHHH
Confidence 46778999999999999999999875666666555433
No 89
>PRK14974 cell division protein FtsY; Provisional
Probab=83.22 E-value=1.5 Score=47.41 Aligned_cols=36 Identities=31% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.+.++|++++ |-|.|||||..-|+..| ...|+++.+
T Consensus 138 ~~~~vi~~~G----~~GvGKTTtiakLA~~l-~~~g~~V~l 173 (336)
T PRK14974 138 GKPVVIVFVG----VNGTGKTTTIAKLAYYL-KKNGFSVVI 173 (336)
T ss_pred CCCeEEEEEc----CCCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 3467999999 56999999999999999 466766543
No 90
>PRK05480 uridine/cytidine kinase; Provisional
Probab=82.94 E-value=1.6 Score=42.61 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++.+|.++| |.|.||||++..|.+.|
T Consensus 5 ~~~iI~I~G----~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAG----GSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 467899999 78999999998887665
No 91
>PRK08233 hypothetical protein; Provisional
Probab=82.84 E-value=0.9 Score=42.42 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=20.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+++|.|+|. | |.||||++-.|++.|
T Consensus 3 ~~iI~I~G~---~-GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAV---S-GGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECC---C-CCCHHHHHHHHHhhC
Confidence 568888883 3 999999999998887
No 92
>PRK13976 thymidylate kinase; Provisional
Probab=82.71 E-value=1.5 Score=43.88 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=31.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
++|.+-|| -|.||||.+--|.+.|..+.|...+...|||+
T Consensus 1 ~fIv~EGi----DGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~ 40 (209)
T PRK13976 1 MFITFEGI----DGSGKTTQSRLLAEYLSDIYGENNVVLTREPG 40 (209)
T ss_pred CEEEEECC----CCCCHHHHHHHHHHHHHHhcCCcceEEeeCCC
Confidence 46677776 59999999999999995333654566789997
No 93
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=82.54 E-value=0.82 Score=46.14 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.4
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEe
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~l 109 (636)
.=|.||||||+.|+.+| ++.| + ++.+
T Consensus 10 KGGvGKTT~a~nLA~~L-a~~G-r-VLli 35 (264)
T PRK13231 10 KGGIGKSTTVSNMAAAY-SNDH-R-VLVI 35 (264)
T ss_pred CCCCcHHHHHHHHhccc-CCCC-E-EEEE
Confidence 88999999999999999 5789 6 4444
No 94
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=82.32 E-value=1.2 Score=44.80 Aligned_cols=35 Identities=29% Similarity=0.218 Sum_probs=27.3
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCcccc
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iN 139 (636)
|-|.||||++--|.+.|+ ... +++...+++||++.
T Consensus 7 ~sGSGKTTla~~L~~~l~-~~~-----------------------~~~~v~vi~~D~f~ 41 (220)
T cd02025 7 SVAVGKSTTARVLQALLS-RWP-----------------------DHPNVELITTDGFL 41 (220)
T ss_pred CCCCCHHHHHHHHHHHHh-hcC-----------------------CCCcEEEEecCccc
Confidence 679999999999988883 321 24678899999983
No 95
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=82.31 E-value=1.1 Score=38.54 Aligned_cols=32 Identities=41% Similarity=0.412 Sum_probs=25.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.-|.||||++..|++.| ++.|+++.+.==.|+
T Consensus 8 kgG~Gkst~~~~la~~~-~~~~~~vl~~d~d~~ 39 (104)
T cd02042 8 KGGVGKTTTAVNLAAAL-ARRGKRVLLIDLDPQ 39 (104)
T ss_pred CCCcCHHHHHHHHHHHH-HhCCCcEEEEeCCCC
Confidence 45999999999999999 577888766645555
No 96
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.27 E-value=1.8 Score=45.15 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.+++|++.+ | -|.|||||...|+..+.
T Consensus 193 ~~~vi~~vG--p--tGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 193 QGGVIALVG--P--TGVGKTTTLAKLAARFV 219 (282)
T ss_pred CCeEEEEEC--C--CCCCHHHHHHHHHHHHH
Confidence 577888886 4 59999999999999984
No 97
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=81.58 E-value=1.1 Score=45.07 Aligned_cols=34 Identities=29% Similarity=0.277 Sum_probs=26.7
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
++|| +|-.|.|||++|.||.++| .+.|.++. .+|
T Consensus 5 ifIt---~t~t~vGKT~vt~~L~~~l-~~~g~~v~-~~K 38 (231)
T PRK12374 5 FFIT---GTDTSVGKTVVSRALLQAL-ASQGKTVA-GYK 38 (231)
T ss_pred EEEE---ECCCCCCHHHHHHHHHHHH-HHCCCeEE-EEC
Confidence 5555 5678999999999999999 57787744 455
No 98
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=81.46 E-value=1.4 Score=44.70 Aligned_cols=32 Identities=38% Similarity=0.472 Sum_probs=26.1
Q ss_pred ecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 76 GITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 76 aitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
++.-..=|.|||||++-|+.+| ++.|+++.+.
T Consensus 5 ~v~n~KGGvGKTT~a~nLA~~l-a~~G~~Vlli 36 (231)
T PRK13849 5 TFCSFKGGAGKTTALMGLCAAL-ASDGKRVALF 36 (231)
T ss_pred EEECCCCCccHHHHHHHHHHHH-HhCCCcEEEE
Confidence 3345678999999999999999 5889886554
No 99
>PRK10867 signal recognition particle protein; Provisional
Probab=81.12 E-value=1.8 Score=48.38 Aligned_cols=36 Identities=31% Similarity=0.296 Sum_probs=28.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCcEEEEe
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCL 109 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~l-g~~~~~~l 109 (636)
.++|++++ |.|+|||||+.-|+..| ... |+++.+.=
T Consensus 100 p~vI~~vG----~~GsGKTTtaakLA~~l-~~~~G~kV~lV~ 136 (433)
T PRK10867 100 PTVIMMVG----LQGAGKTTTAGKLAKYL-KKKKKKKVLLVA 136 (433)
T ss_pred CEEEEEEC----CCCCcHHHHHHHHHHHH-HHhcCCcEEEEE
Confidence 46788886 78999999999999999 466 88776543
No 100
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=81.10 E-value=2.1 Score=39.06 Aligned_cols=48 Identities=33% Similarity=0.338 Sum_probs=30.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiK 121 (636)
|+|.|++- --|.||||++..|+..| ++-|+++++. .+.|++--.||..
T Consensus 1 k~i~v~s~---~~g~G~t~~a~~lA~~l-a~~~~~Vllid~~~~~~~~~~~~~~~ 51 (157)
T PF13614_consen 1 KVIAVWSP---KGGVGKTTLALNLAAAL-ARKGKKVLLIDFDFFSPSLSRLLGIE 51 (157)
T ss_dssp EEEEEEES---STTSSHHHHHHHHHHHH-HHTTT-EEEEE--SSS-HHHHHTTSS
T ss_pred CEEEEECC---CCCCCHHHHHHHHHHHH-HhcCCCeEEEECCCCCCCcccccccc
Confidence 45666653 45899999999999999 5788874332 2444444344443
No 101
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=81.01 E-value=0.95 Score=50.79 Aligned_cols=26 Identities=42% Similarity=0.477 Sum_probs=22.2
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 78 TPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 78 tPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
--|-.|.||||+|+||..||. +-|.+
T Consensus 6 Ag~~SG~GKTTvT~glm~aL~-~rg~~ 31 (451)
T COG1797 6 AGTSSGSGKTTVTLGLMRALR-RRGLK 31 (451)
T ss_pred ecCCCCCcHHHHHHHHHHHHH-hcCCc
Confidence 357899999999999999994 66766
No 102
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=80.69 E-value=13 Score=34.43 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=51.6
Q ss_pred CeEEeeccccccc---cchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHH
Q 006673 364 GFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (636)
Q Consensus 364 dyvVTEAGFGaDl---GaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~ 440 (636)
++.|...|.+.+. ..+++-.+. ..+||.|||-. |.... ....+.+..++++.+|.
T Consensus 21 ~~~v~n~g~~G~~~~~~~~~l~~~~----~~~pd~vvl~~---------G~ND~---------~~~~~~~~~~~~l~~li 78 (169)
T cd01828 21 DVKVANRGISGDTTRGLLARLDEDV----ALQPKAIFIMI---------GINDL---------AQGTSDEDIVANYRTIL 78 (169)
T ss_pred CCceEecCcccccHHHHHHHHHHHh----ccCCCEEEEEe---------eccCC---------CCCCCHHHHHHHHHHHH
Confidence 5555555555443 223322221 46799998865 43321 12245677777777775
Q ss_pred HHHHHHhhcCCcEEEEecCCCC-----CCHHH----HHHHHHHHHHcCCC
Q 006673 441 RHIANTKAYGANVVVAVNMFAT-----DSKAE----LNAVRNAAMAAGAF 481 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~t-----DT~aE----I~~v~e~c~~~Gv~ 481 (636)
+.+... .-+.+||+. .-.+. ...++ -+.+++.|++.|+.
T Consensus 79 ~~~~~~-~~~~~vi~~-~~~p~~~~~~~~~~~~~~~n~~l~~~a~~~~~~ 126 (169)
T cd01828 79 EKLRKH-FPNIKIVVQ-SILPVGELKSIPNEQIEELNRQLAQLAQQEGVT 126 (169)
T ss_pred HHHHHH-CCCCeEEEE-ecCCcCccCcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 555433 257776663 33333 23333 34578888888885
No 103
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=80.66 E-value=1.4 Score=41.44 Aligned_cols=28 Identities=36% Similarity=0.288 Sum_probs=22.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEe
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~l 109 (636)
|.|+||||++.-|+..+. ..|++..++=
T Consensus 8 ~~G~GKTt~~~~la~~~~-~~g~~v~~i~ 35 (173)
T cd03115 8 LQGVGKTTTAAKLALYLK-KKGKKVLLVA 35 (173)
T ss_pred CCCCCHHHHHHHHHHHHH-HCCCcEEEEE
Confidence 679999999999999994 6687765543
No 104
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=80.66 E-value=1.9 Score=48.79 Aligned_cols=61 Identities=18% Similarity=0.150 Sum_probs=36.9
Q ss_pred HHHHHHcCCCCcccccccCeeee-----------eccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 32 SEIAQELNLKPNHYDLYGKYKAK-----------VLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 32 ~~ia~~lgl~~~~l~~YG~~kAK-----------i~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..+-+.+|..+|+.|.-=+ |-| |+.......+++++ -|+||| |-.|.||||+|.||.++|.
T Consensus 193 ~~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~Iag---t~Tg~GKT~vt~~L~~al~ 264 (476)
T PRK06278 193 ENFLKYLKIKEDEKEEIFK-KNKILKEKLKSRSGISTNNKKEERNKPK--GIILLA---TGSESGKTFLTTSIAGKLR 264 (476)
T ss_pred HHHHHHcCCChHHHHHHHH-HhHHHHHHHHHHhcccccccchhhcCCC--eEEEEe---CCCCCCHHHHHHHHHHHHH
Confidence 4466778888886654311 111 11111222222233 377776 4689999999999999995
No 105
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=80.59 E-value=47 Score=30.58 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=57.5
Q ss_pred chHHHHHHHHhhcCCCCeEEeeccccccccc---hhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccc
Q 006673 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGA---EKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAY 424 (636)
Q Consensus 348 nSviAt~~aLklag~~dyvVTEAGFGaDlGa---EKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l 424 (636)
.+.++.++.-... ++-|+-.|++.+.-. +.+-. -....+||.|||-. |.... .
T Consensus 23 ~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~l~~---~~~~~~pd~v~i~~---------G~ND~---------~ 78 (177)
T cd01822 23 PALLQKRLDARGI---DVTVINAGVSGDTTAGGLARLPA---LLAQHKPDLVILEL---------GGNDG---------L 78 (177)
T ss_pred HHHHHHHHHHhCC---CeEEEecCcCCcccHHHHHHHHH---HHHhcCCCEEEEec---------cCccc---------c
Confidence 3455555553333 677777777654322 22221 12336899877754 33211 1
Q ss_pred cccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCC----CCHHH-HHHHHHHHHHcCCC
Q 006673 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT----DSKAE-LNAVRNAAMAAGAF 481 (636)
Q Consensus 425 ~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t----DT~aE-I~~v~e~c~~~Gv~ 481 (636)
...+.+..++ ||++=|+.+++.+.++|+.--..+. +..++ -+.+++.|++.++.
T Consensus 79 ~~~~~~~~~~---~l~~li~~~~~~~~~vil~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 137 (177)
T cd01822 79 RGIPPDQTRA---NLRQMIETAQARGAPVLLVGMQAPPNYGPRYTRRFAAIYPELAEEYGVP 137 (177)
T ss_pred cCCCHHHHHH---HHHHHHHHHHHCCCeEEEEecCCCCccchHHHHHHHHHHHHHHHHcCCc
Confidence 1234555555 5555566677778887775211222 11223 35567788888885
No 106
>PRK00089 era GTPase Era; Reviewed
Probab=80.42 E-value=21 Score=36.70 Aligned_cols=76 Identities=20% Similarity=0.164 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCC-CHHHHHHH-HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCccc
Q 006673 440 ARHIANTKAYGANVVVAVNMFATD-SKAELNAV-RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 517 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tD-T~aEI~~v-~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~L 517 (636)
..+++.++..++|+++++|+-.-- +.+++... .++++..+..++..+. ++=|+|-.+|-+.+.+.+... + ++
T Consensus 103 ~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iS--A~~~~gv~~L~~~L~~~l~~~--~--~~ 176 (292)
T PRK00089 103 EFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPIS--ALKGDNVDELLDVIAKYLPEG--P--PY 176 (292)
T ss_pred HHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEec--CCCCCCHHHHHHHHHHhCCCC--C--CC
Confidence 344555666789999999998765 44555544 4444444433233322 456789899988888877432 2 46
Q ss_pred CCCC
Q 006673 518 YPLD 521 (636)
Q Consensus 518 Y~~~ 521 (636)
|+.+
T Consensus 177 y~~~ 180 (292)
T PRK00089 177 YPED 180 (292)
T ss_pred CCCC
Confidence 6665
No 107
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=80.32 E-value=1.1 Score=44.81 Aligned_cols=46 Identities=13% Similarity=0.163 Sum_probs=29.7
Q ss_pred HHHhHHHHHHHHHhhcCC----cEEEEecCCCCCCHHHHHHHHHHHHHcC
Q 006673 434 AGCVNLARHIANTKAYGA----NVVVAVNMFATDSKAELNAVRNAAMAAG 479 (636)
Q Consensus 434 ~G~~NL~kHIeNi~~fGv----PvVVAINrF~tDT~aEI~~v~e~c~~~G 479 (636)
.|+..+.++|+-+++++. ++-+.+|+|..-+....+.+.+.-+..+
T Consensus 157 ~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 206 (259)
T COG1192 157 EGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELKQLLG 206 (259)
T ss_pred HHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHHHHHHHHHHHhc
Confidence 456668899999988553 3447788998865555555544444333
No 108
>PRK00889 adenylylsulfate kinase; Provisional
Probab=80.15 E-value=2.3 Score=40.25 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
++|++|.+++. .|.||||++.-|++.|. .-|.+.
T Consensus 2 ~~g~~i~~~G~----~GsGKST~a~~la~~l~-~~g~~v 35 (175)
T PRK00889 2 QRGVTVWFTGL----SGAGKTTIARALAEKLR-EAGYPV 35 (175)
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHHH-HcCCeE
Confidence 56999999986 69999999999999994 556543
No 109
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=79.91 E-value=2.3 Score=45.53 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.+.+|+|++ |.|.|||||.-.|...++ ......++++-+|
T Consensus 121 ~~g~ili~G----~tGSGKTT~l~al~~~i~-~~~~~~i~tiEdp 160 (343)
T TIGR01420 121 PRGLILVTG----PTGSGKSTTLASMIDYIN-KNAAGHIITIEDP 160 (343)
T ss_pred cCcEEEEEC----CCCCCHHHHHHHHHHhhC-cCCCCEEEEEcCC
Confidence 478999998 459999999999988884 4445668888877
No 110
>PRK07933 thymidylate kinase; Validated
Probab=79.78 E-value=2.9 Score=41.82 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=32.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
++|.+-|+ -|.||||.+--|.+.|. .-|.+ ++..|+|..|
T Consensus 1 ~~IviEG~----dGsGKST~~~~L~~~L~-~~g~~-v~~~~~P~~~ 40 (213)
T PRK07933 1 MLIAIEGV----DGAGKRTLTEALRAALE-ARGRS-VATLAFPRYG 40 (213)
T ss_pred CEEEEEcC----CCCCHHHHHHHHHHHHH-HCCCe-EEEEecCCCC
Confidence 36677776 59999999999999995 66876 6778999644
No 111
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=79.65 E-value=17 Score=37.17 Aligned_cols=89 Identities=18% Similarity=0.086 Sum_probs=51.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCCH-HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 443 IANTKAYGANVVVAVNMFATDSK-AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~-aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
.+.+++++.|+++++|+-..-.. +..+.+.+++...+...+ -..=++-|+|-.+|.+.+.+.+...+.-|..-|-.+
T Consensus 100 ~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v--~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~ 177 (270)
T TIGR00436 100 LTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDI--VPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTD 177 (270)
T ss_pred HHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCce--EEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence 44456689999999999755323 334455666654443212 223357789999999999988744222122223334
Q ss_pred CCHHHHHHHHHH
Q 006673 522 VSIKEKIDTIAR 533 (636)
Q Consensus 522 ~~L~eKIetIA~ 533 (636)
.|.+.-+..|.|
T Consensus 178 ~~~~~~~~e~ir 189 (270)
T TIGR00436 178 QPDRFKISEIIR 189 (270)
T ss_pred CCHHHHHHHHHH
Confidence 454444444433
No 112
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=78.92 E-value=2.4 Score=47.27 Aligned_cols=35 Identities=31% Similarity=0.274 Sum_probs=27.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
..+++|++++ || |.|||||...|+..+. +-|+++.
T Consensus 204 ~~~~ii~lvG--pt--GvGKTTt~akLA~~l~-~~g~~V~ 238 (407)
T PRK12726 204 SNHRIISLIG--QT--GVGKTTTLVKLGWQLL-KQNRTVG 238 (407)
T ss_pred cCCeEEEEEC--CC--CCCHHHHHHHHHHHHH-HcCCeEE
Confidence 3588999988 55 9999999999998873 5576543
No 113
>PRK00131 aroK shikimate kinase; Reviewed
Probab=78.67 E-value=1.8 Score=39.79 Aligned_cols=28 Identities=39% Similarity=0.532 Sum_probs=24.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++++.|+++++ .|.||||++..|++.|+
T Consensus 2 ~~~~~i~l~G~----~GsGKstla~~La~~l~ 29 (175)
T PRK00131 2 LKGPNIVLIGF----MGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCCeEEEEcC----CCCCHHHHHHHHHHHhC
Confidence 35789999995 69999999999999884
No 114
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=78.58 E-value=12 Score=33.77 Aligned_cols=56 Identities=9% Similarity=-0.101 Sum_probs=38.2
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++|+||++|+..-..+. ..+...+++++.++. +..+. ++-|+|-.+|=+.+++.+
T Consensus 106 ~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 106 DEFPMILVGNKADLEHQRKVSREEGQELARKLKIP-YIETS--AKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCCEEEEeeCccccccceecHHHHHHHHHHcCCc-EEEee--CCCCCCHHHHHHHHHHhh
Confidence 689999999998754433 233467778888875 44443 355788888877776543
No 115
>PRK10436 hypothetical protein; Provisional
Probab=78.02 E-value=2.2 Score=48.08 Aligned_cols=40 Identities=25% Similarity=0.311 Sum_probs=31.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
..-+||||+-| |+|||||.-.+...++ ..+ +.++.+=.|-
T Consensus 217 ~~GliLvtGpT----GSGKTTtL~a~l~~~~-~~~-~~i~TiEDPv 256 (462)
T PRK10436 217 PQGLILVTGPT----GSGKTVTLYSALQTLN-TAQ-INICSVEDPV 256 (462)
T ss_pred cCCeEEEECCC----CCChHHHHHHHHHhhC-CCC-CEEEEecCCc
Confidence 35699999944 9999999988888884 544 4588888774
No 116
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=77.80 E-value=2.6 Score=41.16 Aligned_cols=36 Identities=28% Similarity=0.351 Sum_probs=28.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+|..|.+|+. .|.||||++-.|.+.| ...|.++..-
T Consensus 1 ~g~vIwltGl----sGsGKtTlA~~L~~~L-~~~g~~~~~L 36 (156)
T PF01583_consen 1 KGFVIWLTGL----SGSGKTTLARALERRL-FARGIKVYLL 36 (156)
T ss_dssp S-EEEEEESS----TTSSHHHHHHHHHHHH-HHTTS-EEEE
T ss_pred CCEEEEEECC----CCCCHHHHHHHHHHHH-HHcCCcEEEe
Confidence 3778999997 5999999999999999 4779887653
No 117
>PTZ00301 uridine kinase; Provisional
Probab=77.56 E-value=2.1 Score=43.14 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=22.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~ 100 (636)
++|-|+| |.|+||||++-.|.+.|+.+
T Consensus 4 ~iIgIaG----~SgSGKTTla~~l~~~l~~~ 30 (210)
T PTZ00301 4 TVIGISG----ASGSGKSSLSTNIVSELMAH 30 (210)
T ss_pred EEEEEEC----CCcCCHHHHHHHHHHHHHhh
Confidence 4777877 46999999999999998533
No 118
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=77.35 E-value=2.8 Score=46.95 Aligned_cols=35 Identities=26% Similarity=0.225 Sum_probs=28.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
..+|++++ |-|+|||||+.-|+..| ...|+++.++
T Consensus 95 p~vI~lvG----~~GsGKTTtaakLA~~L-~~~g~kV~lV 129 (437)
T PRK00771 95 PQTIMLVG----LQGSGKTTTAAKLARYF-KKKGLKVGLV 129 (437)
T ss_pred CeEEEEEC----CCCCcHHHHHHHHHHHH-HHcCCeEEEe
Confidence 56888888 67999999999999999 4678776654
No 119
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=77.26 E-value=13 Score=35.48 Aligned_cols=69 Identities=19% Similarity=0.195 Sum_probs=46.3
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCe---EEEcCccccCccchhHHHHHHHHHh
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFD---AVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~---~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
....|++-++.+++|+||+||+-..- +++++.+.+... ..+... +-+--.=+.=|.|-.+|-+.+++.+
T Consensus 110 ~~~~~l~~~~~~~~p~ivvlNK~D~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~ 186 (188)
T PF00009_consen 110 QTEEHLKILRELGIPIIVVLNKMDLI-EKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL 186 (188)
T ss_dssp HHHHHHHHHHHTT-SEEEEEETCTSS-HHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred ccccccccccccccceEEeeeeccch-hhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence 57889999999999999999998766 666665544433 333321 2222233455778888888888765
No 120
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=77.16 E-value=2.5 Score=47.10 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=46.5
Q ss_pred chhccccccccCCCC-cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHH---hHHHHHHHHHhhcCCc-
Q 006673 378 AEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN- 452 (636)
Q Consensus 378 aEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~---~NL~kHIeNi~~fGvP- 452 (636)
-++| +++..+|+. .|++|||.-... |+- ++|| ....+|+.-++.+|+|
T Consensus 95 h~~f--~~~~~~g~~~aD~ailVVda~~-----G~~--------------------e~~~~~~~qT~eh~~~~~~~gi~~ 147 (446)
T PTZ00141 95 HRDF--IKNMITGTSQADVAILVVASTA-----GEF--------------------EAGISKDGQTREHALLAFTLGVKQ 147 (446)
T ss_pred hHHH--HHHHHHhhhhcCEEEEEEEcCC-----Cce--------------------ecccCCCccHHHHHHHHHHcCCCe
Confidence 4556 467777776 889888875331 211 1122 2578999999999999
Q ss_pred EEEEecCCCCC----CHHHHHHHHHHHH
Q 006673 453 VVVAVNMFATD----SKAELNAVRNAAM 476 (636)
Q Consensus 453 vVVAINrF~tD----T~aEI~~v~e~c~ 476 (636)
+||+||+-..+ +++.++.+.+..+
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~i~ 175 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKEVS 175 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHHHH
Confidence 56999998743 3455555544443
No 121
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=76.88 E-value=2 Score=43.92 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC--CC
Q 006673 437 VNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PL 514 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s--~f 514 (636)
.++.-...-+-++++|.|+++|+..-=.+. .+...+|..+.......+... -..|.+++.++++.-.. .|
T Consensus 143 s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~-~~~~l~~~~d~~~l~~~~~~~-------~~~l~~~i~~~l~~~~~~~~f 214 (238)
T PF03029_consen 143 SSLLLSLSIMLRLELPHVNVLSKIDLLSKY-LEFILEWFEDPDSLEDLLESD-------YKKLNEEIAELLDDFGLVIRF 214 (238)
T ss_dssp HHHHHHHHHHHHHTSEEEEEE--GGGS-HH-HHHHHHHHHSHHHHHHHHHT--------HHHHHHHHHHHCCCCSSS---
T ss_pred HHHHHHHHHHhhCCCCEEEeeeccCcccch-hHHHHHHhcChHHHHHHHHHH-------HHHHHHHHHHHHhhcCCCceE
Confidence 355555556667999999999998654322 445555544222210111111 67889999999975322 35
Q ss_pred cccCC-CCCCHHHHHHHH
Q 006673 515 KFLYP-LDVSIKEKIDTI 531 (636)
Q Consensus 515 k~LY~-~~~~L~eKIetI 531 (636)
.++-- +..++++=+..|
T Consensus 215 ~pls~~~~~~~~~L~~~i 232 (238)
T PF03029_consen 215 IPLSSKDGEGMEELLAAI 232 (238)
T ss_dssp EE-BTTTTTTHHHHHHHH
T ss_pred EEEECCChHHHHHHHHHH
Confidence 54443 345555444433
No 122
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=76.43 E-value=12 Score=40.78 Aligned_cols=42 Identities=21% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCcEE-EEecCCCCCCHHHH-----HHHHHHHHHcC
Q 006673 438 NLARHIANTKAYGANVV-VAVNMFATDSKAEL-----NAVRNAAMAAG 479 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvV-VAINrF~tDT~aEI-----~~v~e~c~~~G 479 (636)
.-.+|+..++.+|+|.+ |++|+..--+++|. +.+++++++.+
T Consensus 115 qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHHHcCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 34589999999999976 68999875443332 24666777666
No 123
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=76.36 E-value=1.8 Score=48.01 Aligned_cols=31 Identities=32% Similarity=0.405 Sum_probs=25.5
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
|+-|..|.||||+|.||.++| .+.|.++...
T Consensus 4 I~gT~t~vGKT~vt~~L~~~L-~~~G~~V~~f 34 (449)
T TIGR00379 4 IAGTSSGVGKTTISTGIMKAL-SRRKLRVQPF 34 (449)
T ss_pred EEeCCCCCcHHHHHHHHHHHH-HHCCCceeEE
Confidence 345778999999999999999 5789986543
No 124
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=76.33 E-value=9.1 Score=43.96 Aligned_cols=102 Identities=26% Similarity=0.360 Sum_probs=65.0
Q ss_pred ccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEE
Q 006673 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (636)
Q Consensus 376 lGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVV 455 (636)
-|=|=|-+.-.|-+.+. |.||||.-+ .+|=.|+ -+|| |+.+|.+|+|.||
T Consensus 63 PGHeAFt~mRaRGa~vt-DIaILVVa~----dDGv~pQ--------------TiEA-----------I~hak~a~vP~iV 112 (509)
T COG0532 63 PGHEAFTAMRARGASVT-DIAILVVAA----DDGVMPQ--------------TIEA-----------INHAKAAGVPIVV 112 (509)
T ss_pred CcHHHHHHHHhcCCccc-cEEEEEEEc----cCCcchh--------------HHHH-----------HHHHHHCCCCEEE
Confidence 35566777667766555 556665532 2322221 2333 6678899999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHcCCC------eEEEcCccccCccchhHHHHHHHHHhh
Q 006673 456 AVNMFATDSKAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 456 AINrF~tDT~aEI~~v~e~c~~~Gv~------~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
|+|+-.-- ++..+.++....+.|.. ++.+-.+=|+.|+|--+|=+.++-.++
T Consensus 113 AiNKiDk~-~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 113 AINKIDKP-EANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEecccCC-CCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 99986443 33444555555555542 255556668999999999888877765
No 125
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=76.26 E-value=60 Score=35.04 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=56.6
Q ss_pred HHhHHHHHHHHHhhcCCcEEEEecCCC----CCCHHHHHHHHHHHHHcCCCeEEEcCcc---ccCc------cchhHHHH
Q 006673 435 GCVNLARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAFDAVVCSHH---AHGG------KGAVDLGI 501 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAINrF~----tDT~aEI~~v~e~c~~~Gv~~~avs~~w---a~GG------eGa~eLA~ 501 (636)
|.+...+|++..+ .++|++|-||... .++.+|...+.+.+.+ ++. +...+.- .+|+ +-..++.+
T Consensus 123 g~~~~~~~l~~~~-~~~pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad-~lelN~scP~~~g~~~~~~~~~~~eiv~ 199 (344)
T PRK05286 123 GADALAERLKKAY-RGIPLGINIGKNKDTPLEDAVDDYLICLEKLYP-YAD-YFTVNISSPNTPGLRDLQYGEALDELLA 199 (344)
T ss_pred hHHHHHHHHHHhc-CCCcEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCC-EEEEEccCCCCCCcccccCHHHHHHHHH
Confidence 4444555555555 7899999998774 3456777666666543 453 4333321 1121 22345555
Q ss_pred HHHHHhhc----CCCCCcccCCCCCCHHHHHHHHHH---HhCCCceeeCHH
Q 006673 502 AVQRACEN----VTQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYSEE 545 (636)
Q Consensus 502 aVv~a~e~----~~s~fk~LY~~~~~L~eKIetIA~---IYGA~~V~~S~~ 545 (636)
+|.+++.. .|=-.|.-. +.+.++ +..+|+ -.|+|+|+.+..
T Consensus 200 aVr~~~~~~~~~~PV~vKlsp--~~~~~~-~~~ia~~l~~~Gadgi~~~nt 247 (344)
T PRK05286 200 ALKEAQAELHGYVPLLVKIAP--DLSDEE-LDDIADLALEHGIDGVIATNT 247 (344)
T ss_pred HHHHHHhccccCCceEEEeCC--CCCHHH-HHHHHHHHHHhCCcEEEEeCC
Confidence 66555531 121133332 234333 556666 469999988653
No 126
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=76.20 E-value=3.5 Score=40.48 Aligned_cols=38 Identities=29% Similarity=0.450 Sum_probs=28.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|+|++ |.|.||||+.-.|...+. .-....++++.+|-
T Consensus 3 lilI~G----ptGSGKTTll~~ll~~~~-~~~~~~i~t~e~~~ 40 (198)
T cd01131 3 LVLVTG----PTGSGKSTTLAAMIDYIN-KNKTHHILTIEDPI 40 (198)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHhh-hcCCcEEEEEcCCc
Confidence 567776 669999999999988884 33445677888763
No 127
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=76.13 E-value=8.1 Score=42.15 Aligned_cols=115 Identities=20% Similarity=0.198 Sum_probs=68.9
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCc
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk 515 (636)
.|+.+|+-++++|.-+.|++|-|..+.+.| .+.++++ .+.|+..+++++. |.+.|+++. -.++.
T Consensus 50 ~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l-~e~GvDaviv~Dp------g~i~l~~e~-------~p~l~ 115 (347)
T COG0826 50 DLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRL-VELGVDAVIVADP------GLIMLARER-------GPDLP 115 (347)
T ss_pred HHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHH-HHcCCCEEEEcCH------HHHHHHHHh-------CCCCc
Confidence 488999999999999999999999887777 4555555 4599987777765 344444332 12344
Q ss_pred ccCCCCCCH--HHHHHHHHHHhCCCceeeCHHH-HHHHHHHHhC---------CCCCCCeeEee
Q 006673 516 FLYPLDVSI--KEKIDTIARSYGASGVEYSEEA-EKQIEMYTGQ---------GFSGLPICMAK 567 (636)
Q Consensus 516 ~LY~~~~~L--~eKIetIA~IYGA~~V~~S~~A-~kqLk~ie~l---------G~~~LPVCmAK 567 (636)
+-+....++ .++++--.+. |+..|..+.+- ..+|+++.+. -++.|++...+
T Consensus 116 ih~S~q~~v~N~~~~~f~~~~-G~~rvVl~rEls~~ei~~i~~~~~~veiEvfVhGalcia~Sg 178 (347)
T COG0826 116 IHVSTQANVTNAETAKFWKEL-GAKRVVLPRELSLEEIKEIKEQTPDVEIEVFVHGALCIAYSG 178 (347)
T ss_pred EEEeeeEecCCHHHHHHHHHc-CCEEEEeCccCCHHHHHHHHHhCCCceEEEEEecchhhccCc
Confidence 444333322 2333333332 36666666542 3444444443 25566655544
No 128
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=76.06 E-value=15 Score=32.74 Aligned_cols=55 Identities=15% Similarity=0.060 Sum_probs=35.6
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 449 fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
.++|+||+.|+..--. ....+.+.++++..+.. +..+. ++-|+|-.+|=+.+++.
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 105 DDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIP-YIETS--AKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCCCEEEEEECcccccceecHHHHHHHHHHhCCe-EEEec--CCCCCCHHHHHHHHHHH
Confidence 5899999999966422 22344566777777875 43333 56777777766665543
No 129
>PRK06696 uridine kinase; Validated
Probab=75.67 E-value=3.1 Score=41.42 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=24.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg 102 (636)
-.+|.|+| +.|.||||++--|++.|+ ..|
T Consensus 22 ~~iI~I~G----~sgsGKSTlA~~L~~~l~-~~g 50 (223)
T PRK06696 22 PLRVAIDG----ITASGKTTFADELAEEIK-KRG 50 (223)
T ss_pred ceEEEEEC----CCCCCHHHHHHHHHHHHH-HcC
Confidence 34888888 679999999999999995 434
No 130
>PRK03846 adenylylsulfate kinase; Provisional
Probab=75.42 E-value=3.6 Score=40.09 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
++|++|.+|+.+ |.||||++--|.+.|. ..|..++
T Consensus 22 ~~~~~i~i~G~~----GsGKSTla~~l~~~l~-~~~~~~~ 56 (198)
T PRK03846 22 HKGVVLWFTGLS----GSGKSTVAGALEEALH-ELGVSTY 56 (198)
T ss_pred CCCEEEEEECCC----CCCHHHHHHHHHHHHH-hCCCCEE
Confidence 568999999874 9999999999988883 4565543
No 131
>PRK15494 era GTPase Era; Provisional
Probab=75.36 E-value=20 Score=38.41 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=54.2
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
.++.++.++.|+|+++|+..-.. ++++.+.+++.+.+.. ..+-..=++=|+|-.+|-+.+.+.+... .++|+.+
T Consensus 152 il~~l~~~~~p~IlViNKiDl~~-~~~~~~~~~l~~~~~~-~~i~~iSAktg~gv~eL~~~L~~~l~~~----~~~~~~~ 225 (339)
T PRK15494 152 ILDKLRSLNIVPIFLLNKIDIES-KYLNDIKAFLTENHPD-SLLFPISALSGKNIDGLLEYITSKAKIS----PWLYAED 225 (339)
T ss_pred HHHHHHhcCCCEEEEEEhhcCcc-ccHHHHHHHHHhcCCC-cEEEEEeccCccCHHHHHHHHHHhCCCC----CCCCCCC
Confidence 35556678899999999987533 2456667777665532 1222333667888888888888776433 3556555
Q ss_pred ----CCHHHHHHHHHH
Q 006673 522 ----VSIKEKIDTIAR 533 (636)
Q Consensus 522 ----~~L~eKIetIA~ 533 (636)
.|.+.-+..|-|
T Consensus 226 ~~td~~~~~~~~eiiR 241 (339)
T PRK15494 226 DITDLPMRFIAAEITR 241 (339)
T ss_pred CCCCCCHHHHHHHHHH
Confidence 455655555544
No 132
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=75.21 E-value=5.6 Score=38.01 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=39.5
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++|++|+.|+..-..+.+ .+.+++++++.+.. +..+. ++=|+|-.+|-+.+++.+-+
T Consensus 105 ~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~S--a~~~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 105 EDVVIMLLGNKADMSGERVVKREDGERLAKEYGVP-FMETS--AKTGLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCcEEEEEEcccchhccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 4799999999987643322 23455666777775 44443 34568999988888877754
No 133
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=74.76 E-value=3.6 Score=40.22 Aligned_cols=36 Identities=33% Similarity=0.362 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.|.+++|++ |.|.||||.+.-++..+ ...|.+++.
T Consensus 17 ~~g~i~~i~G----~~GsGKT~l~~~~a~~~-~~~g~~v~y 52 (218)
T cd01394 17 ERGTVTQVYG----PPGTGKTNIAIQLAVET-AGQGKKVAY 52 (218)
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhcCCeEEE
Confidence 6799999999 67999999999998887 355666543
No 134
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=74.68 E-value=3.6 Score=39.83 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
|.|++++|++ |.|.||||.+.-++-... +.|.++
T Consensus 10 ~~g~i~~i~G----~~GsGKT~l~~~~~~~~~-~~g~~v 43 (209)
T TIGR02237 10 ERGTITQIYG----PPGSGKTNICMILAVNAA-RQGKKV 43 (209)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCeE
Confidence 6799999999 789999999987766652 344433
No 135
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=74.19 E-value=2.6 Score=39.06 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=21.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
-.|.||||+|.||...| .+.|.++ .++|
T Consensus 7 ~~~~Gkt~~~~~l~~~l-~~~~~~v-~~~k 34 (134)
T cd03109 7 GTDIGKTVATAILARAL-KEKGYRV-APLK 34 (134)
T ss_pred CCCcCHHHHHHHHHHHH-HHCCCeE-EEEe
Confidence 35699999999999999 5777774 4444
No 136
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=74.17 E-value=4.3 Score=44.16 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC-CcEEEEeeCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKVVTCLRQPSQ 114 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg-~~~~~~lRePSl 114 (636)
+.+.+|+||+ |-|.|||||.-.|.+-++...+ .+.++++-.|.-
T Consensus 132 ~~~glilI~G----pTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 132 PQEGIVFITG----ATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIE 176 (358)
T ss_pred ccCCEEEEEC----CCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCce
Confidence 3578999999 4599999999999988853333 346888888764
No 137
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=73.83 E-value=4.9 Score=39.58 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=27.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
..++++|++ |+|.||||+...+.+++. .-|++.+++
T Consensus 17 ~~~~~~l~G----~aGtGKT~~l~~~~~~~~-~~g~~v~~~ 52 (196)
T PF13604_consen 17 GDRVSVLQG----PAGTGKTTLLKALAEALE-AAGKRVIGL 52 (196)
T ss_dssp TCSEEEEEE----STTSTHHHHHHHHHHHHH-HTT--EEEE
T ss_pred CCeEEEEEE----CCCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 457899988 699999999999999994 546555443
No 138
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=73.68 E-value=2.1 Score=47.92 Aligned_cols=30 Identities=33% Similarity=0.371 Sum_probs=24.9
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
|+|| .|-.|.||||+|.||.++| .+.|.++
T Consensus 4 ~~i~---~~~s~~GKT~vt~gl~~~l-~~~g~~v 33 (433)
T PRK13896 4 FVLG---GTSSGVGKTVATLATIRAL-EDAGYAV 33 (433)
T ss_pred EEEE---eCCCCCCHHHHHHHHHHHH-HHCCCee
Confidence 4555 4578999999999999999 5778876
No 139
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=73.67 E-value=3 Score=47.78 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=30.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.-+||||+-| |+|||||--.+...++ ... +.++++-.|-
T Consensus 316 ~Glilv~G~t----GSGKTTtl~a~l~~~~-~~~-~~i~tiEdpv 354 (564)
T TIGR02538 316 QGMVLVTGPT----GSGKTVSLYTALNILN-TEE-VNISTAEDPV 354 (564)
T ss_pred CCeEEEECCC----CCCHHHHHHHHHHhhC-CCC-ceEEEecCCc
Confidence 4589999843 9999999888888884 443 4588888873
No 140
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=73.66 E-value=11 Score=34.98 Aligned_cols=69 Identities=10% Similarity=0.067 Sum_probs=47.2
Q ss_pred HhHHHHHHHHHhhc----CCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 436 CVNLARHIANTKAY----GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 436 ~~NL~kHIeNi~~f----GvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
|.++...++.++.+ +.|++++.|+..--.+ -..+.+.++|++.++. .-+..++=|+|-.+|-+.+++.+
T Consensus 102 ~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~---~~e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 102 FLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIP---YFETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCe---EEEEeCCCCCCHHHHHHHHHHHH
Confidence 44455555555543 6899999999765322 1234567888888875 34678888999988888877654
No 141
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=73.39 E-value=31 Score=34.83 Aligned_cols=102 Identities=11% Similarity=0.031 Sum_probs=62.9
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEec--CC-CCCCHH-------HHHHHHHHHHHcCCCeEEEcCccccCccc
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN--MF-ATDSKA-------ELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAIN--rF-~tDT~a-------EI~~v~e~c~~~Gv~~~avs~~wa~GGeG 495 (636)
.+|.+.-++.+.++++.|+..+.+|.++|+.-- .| ..++++ .++.+.+.+++.|+. +++-++-..-. .
T Consensus 83 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~-~ 160 (284)
T PRK13210 83 SRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVM-LAVEIMDTPFM-N 160 (284)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCE-EEEEecCcccc-C
Confidence 456677788899999999999999999998521 01 123332 367777888899996 77766521111 1
Q ss_pred hhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHH
Q 006673 496 AVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTI 531 (636)
Q Consensus 496 a~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetI 531 (636)
..+-+..+++.+.. ..+.+.||. ..++.+-++..
T Consensus 161 ~~~~~~~l~~~v~~--~~~~~~~D~~h~~~~~~~~~~~l~~~ 200 (284)
T PRK13210 161 SISKWKKWDKEIDS--PWLTVYPDVGNLSAWGNDVWSELKLG 200 (284)
T ss_pred CHHHHHHHHHHcCC--CceeEEecCChhhhcCCCHHHHHHHh
Confidence 22233345555532 347776665 33445555544
No 142
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=73.26 E-value=26 Score=38.63 Aligned_cols=68 Identities=15% Similarity=-0.012 Sum_probs=44.3
Q ss_pred cCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 449 YGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
.+.|+||++|+-.--..+|+. .+.+++++.+.. ..+..+-+.=|+|-.+|.+.+.+.+.+. .++|+.+
T Consensus 274 ~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~-~~Vi~ISA~tg~GIdeLl~~I~~~L~~~----~~~~~~~ 342 (390)
T PRK12298 274 AEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWE-GPVYLISAASGLGVKELCWDLMTFIEEN----PREEAEE 342 (390)
T ss_pred cCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCC-CCEEEEECCCCcCHHHHHHHHHHHhhhC----cccCCcc
Confidence 468999999998765556654 445555554431 0122234555899999999999988642 3556654
No 143
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=73.18 E-value=4.2 Score=37.62 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=26.3
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
-.-|+||||++.+|+..+ +..|+++.+.=-.|
T Consensus 7 ~kgg~gkt~~~~~~a~~~-~~~~~~~~~vd~D~ 38 (139)
T cd02038 7 GKGGVGKTNISANLALAL-AKLGKRVLLLDADL 38 (139)
T ss_pred CCCCCcHHHHHHHHHHHH-HHCCCcEEEEECCC
Confidence 378999999999999999 47788877765554
No 144
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=73.13 E-value=17 Score=32.85 Aligned_cols=52 Identities=10% Similarity=-0.128 Sum_probs=33.1
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aV 503 (636)
.++|+||+.|+..-..+.+ .+.+.+++++.|.+ +..+.... |+|-.+|-+.+
T Consensus 105 ~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~--~~~v~~l~~~l 158 (162)
T cd04106 105 GDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLP-LFRTSVKD--DFNVTELFEYL 158 (162)
T ss_pred CCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEEECCC--CCCHHHHHHHH
Confidence 5899999999987543333 34556777888886 55444433 45655554443
No 145
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=73.05 E-value=3.1 Score=40.81 Aligned_cols=28 Identities=29% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+|.|.+|.+++ |.|.||||++--|.+.|
T Consensus 3 ~~~g~vi~I~G----~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 3 KPKGIIIGIGG----GSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCCeEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 47799999999 67999999887666555
No 146
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=72.59 E-value=9 Score=45.85 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=54.6
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCH
Q 006673 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSI 524 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L 524 (636)
+++.|+|+||++|+-.-....+++ .+.++.++.|++ ++. .-+.=|+|-.+|.+++.+..+++ ..-+.-|+. .+
T Consensus 108 l~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~p-Vvp--iSA~~g~GIdeL~~~I~~~~~~~-~~~~~~yp~--~l 181 (772)
T PRK09554 108 LLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCP-VIP--LVSTRGRGIEALKLAIDRHQANE-NVELVHYPQ--PL 181 (772)
T ss_pred HHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCC-EEE--EEeecCCCHHHHHHHHHHhhhcc-CCcccCCCH--HH
Confidence 456799999999998754333322 245566778987 443 34556788888888888776432 222344653 58
Q ss_pred HHHHHHHHH-H
Q 006673 525 KEKIDTIAR-S 534 (636)
Q Consensus 525 ~eKIetIA~-I 534 (636)
++.++.+.. +
T Consensus 182 e~~I~~l~~~L 192 (772)
T PRK09554 182 LNEADSLAKVM 192 (772)
T ss_pred HHHHHHHHHHh
Confidence 888888877 5
No 147
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=72.03 E-value=2.7 Score=43.58 Aligned_cols=32 Identities=25% Similarity=0.291 Sum_probs=25.1
Q ss_pred EeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 74 VTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
||.+ -+.=|.||||+.+.|+.+| .+.|+++.+
T Consensus 4 Itf~-s~KGGaGKTT~~~~LAs~l-a~~G~~V~l 35 (231)
T PF07015_consen 4 ITFA-SSKGGAGKTTAAMALASEL-AARGARVAL 35 (231)
T ss_pred EEEe-cCCCCCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 3444 3678999999999999999 577887654
No 148
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=71.87 E-value=5.7 Score=46.75 Aligned_cols=89 Identities=25% Similarity=0.347 Sum_probs=59.2
Q ss_pred HHHHHHHH---HhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 006673 438 NLARHIAN---TKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 438 NL~kHIeN---i~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s 512 (636)
||+|++-- +..+|+|+|+|+|..+--... +|+ +.++-+.+|++ ++. .-++=|+|-.||=+++++..+++..
T Consensus 93 nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~ID-~~~L~~~LGvP-Vv~--tvA~~g~G~~~l~~~i~~~~~~~~~ 168 (653)
T COG0370 93 NLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRID-IEKLSKLLGVP-VVP--TVAKRGEGLEELKRAIIELAESKTT 168 (653)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEeccHhhHHhcCCccc-HHHHHHHhCCC-EEE--EEeecCCCHHHHHHHHHHhcccccc
Confidence 77777654 456999999999987321110 121 34455679998 332 2356678899999999998876433
Q ss_pred CCcccCCCCCCHHHHHHHHH
Q 006673 513 PLKFLYPLDVSIKEKIDTIA 532 (636)
Q Consensus 513 ~fk~LY~~~~~L~eKIetIA 532 (636)
++.+-|+ ..+++.|+.++
T Consensus 169 ~~~~~y~--~~ie~~i~~l~ 186 (653)
T COG0370 169 PREVDYG--EEIEEEIKELE 186 (653)
T ss_pred ccccccc--hHHHHHHHHHH
Confidence 4556664 46777777665
No 149
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=71.84 E-value=12 Score=39.67 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=42.6
Q ss_pred HhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 006673 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~G 492 (636)
|....+-|+++++.|++|.|-.--|..++.+|++.+.+++.++|+..+.++..+..|
T Consensus 148 f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~ 204 (318)
T TIGR03470 148 FDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGMTISPGYAYE 204 (318)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc
Confidence 344445556666789987665555778999999999999999999767777666554
No 150
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=71.10 E-value=8 Score=40.52 Aligned_cols=84 Identities=18% Similarity=0.132 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEEcCccccCccch-hHHHHHHHHHhhcCCCCC
Q 006673 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGA-VDLGIAVQRACENVTQPL 514 (636)
Q Consensus 438 NL~kHIeNi~~fGv-PvVVAINrF~tDT~aEI~~v~e~c~~~G-v~~~avs~~wa~GGeGa-~eLA~aVv~a~e~~~s~f 514 (636)
=|.+||+|+.+-|+ .+||+.|.|-.| +++++..+.. ...++.+..|.+|.-|- +-+|+..+. ..|
T Consensus 33 ii~~~i~~L~~~gi~e~vvV~~g~~~~------lve~~l~~~~~~~~iv~N~~y~ktN~~~Sl~~akd~~~------~~f 100 (239)
T COG1213 33 IIYRTIENLAKAGITEFVVVTNGYRAD------LVEEFLKKYPFNAKIVINSDYEKTNTGYSLLLAKDYMD------GRF 100 (239)
T ss_pred eHHHHHHHHHHcCCceEEEEeccchHH------HHHHHHhcCCcceEEEeCCCcccCCceeEEeeehhhhc------CcE
Confidence 48999999999998 577778899876 6777777655 33477888888887443 334444332 114
Q ss_pred cccCCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHHH
Q 006673 515 KFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEM 552 (636)
Q Consensus 515 k~LY~~~~~L~eKIetIA~IYGA~~V~~S~~A~kqLk~ 552 (636)
-.++ .++.|.+...+++=+
T Consensus 101 ii~~-------------------sD~vye~~~~e~l~~ 119 (239)
T COG1213 101 ILVM-------------------SDHVYEPSILERLLE 119 (239)
T ss_pred EEEe-------------------CCEeecHHHHHHHHh
Confidence 4444 357788877776655
No 151
>PLN00043 elongation factor 1-alpha; Provisional
Probab=71.06 E-value=6.2 Score=44.06 Aligned_cols=77 Identities=23% Similarity=0.383 Sum_probs=48.9
Q ss_pred cchhccccccccCCCC-cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHH---hHHHHHHHHHhhcCCc
Q 006673 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---VNLARHIANTKAYGAN 452 (636)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~---~NL~kHIeNi~~fGvP 452 (636)
|-|+|+. ...+|+. .|++|||.-..- |.. ++|+ .-..+|+.-++.+|+|
T Consensus 94 Gh~df~~--~~~~g~~~aD~aIlVVda~~----G~~---------------------e~g~~~~~qT~eh~~~~~~~gi~ 146 (447)
T PLN00043 94 GHRDFIK--NMITGTSQADCAVLIIDSTT----GGF---------------------EAGISKDGQTREHALLAFTLGVK 146 (447)
T ss_pred CHHHHHH--HHHhhhhhccEEEEEEEccc----Cce---------------------ecccCCCchHHHHHHHHHHcCCC
Confidence 4466653 4455554 899999986542 211 1111 2568899999999996
Q ss_pred -EEEEecCCCCCC----HHH----HHHHHHHHHHcCC
Q 006673 453 -VVVAVNMFATDS----KAE----LNAVRNAAMAAGA 480 (636)
Q Consensus 453 -vVVAINrF~tDT----~aE----I~~v~e~c~~~Gv 480 (636)
+||++|+-...+ ++. ++.+++++++.|.
T Consensus 147 ~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~g~ 183 (447)
T PLN00043 147 QMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGY 183 (447)
T ss_pred cEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 589999976321 222 4556777777773
No 152
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=70.87 E-value=6 Score=39.66 Aligned_cols=35 Identities=34% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.+|=.|-+|+.+ |+||||++-.|.|+|. .-|+-+.
T Consensus 29 qkGcviWiTGLS----gSGKStlACaL~q~L~-qrgkl~Y 63 (207)
T KOG0635|consen 29 QKGCVIWITGLS----GSGKSTLACALSQALL-QRGKLTY 63 (207)
T ss_pred CCCcEEEEeccC----CCCchhHHHHHHHHHH-hcCceEE
Confidence 569999999995 9999999999999995 5577654
No 153
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=70.49 E-value=83 Score=32.89 Aligned_cols=92 Identities=21% Similarity=0.320 Sum_probs=52.4
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC-CCeEEE---cCccccCccc---hhHHHHHHHHHhhcCCCCCcccCC
Q 006673 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAG-AFDAVV---CSHHAHGGKG---AVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~G-v~~~av---s~~wa~GGeG---a~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
+++++|++|-|+-. +.+++....+.+++.| +..+.+ |-+...||.- -.++..++++.+.+. .++-....
T Consensus 88 ~~~~~p~i~si~g~---~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~-~~~pv~vK 163 (301)
T PRK07259 88 EEFDTPIIANVAGS---TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV-VKVPVIVK 163 (301)
T ss_pred hccCCcEEEEeccC---CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh-cCCCEEEE
Confidence 35799999988754 4788888888888898 753434 3333333321 135566666666432 12222222
Q ss_pred CCCCHHHHHHHHHH---HhCCCceeeC
Q 006673 520 LDVSIKEKIDTIAR---SYGASGVEYS 543 (636)
Q Consensus 520 ~~~~L~eKIetIA~---IYGA~~V~~S 543 (636)
....++ .+..+|+ -.|+|.|.++
T Consensus 164 l~~~~~-~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 164 LTPNVT-DIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred cCCCch-hHHHHHHHHHHcCCCEEEEE
Confidence 222232 3445555 4788888763
No 154
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=70.33 E-value=36 Score=31.35 Aligned_cols=69 Identities=17% Similarity=0.106 Sum_probs=44.3
Q ss_pred HHhHHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 435 GCVNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 435 G~~NL~kHIeNi~~f--GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.+.++.+.++.++++ ++|++|+.|+-.-+. ++.+...+++++.+.+ +.. .=++=|+|-.+|-+.+++.+
T Consensus 87 s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~-~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 87 TYKNLSKWYEELREYRPEIPCIVVANKIDLDP-SVTQKKFNFAEKHNLP-LYY--VSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEECccCch-hHHHHHHHHHHHcCCe-EEE--EeCCCCCCHHHHHHHHHHHH
Confidence 345566666666664 899999999976542 2233445667766765 333 23466678888877777654
No 155
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=70.03 E-value=2.7 Score=46.70 Aligned_cols=33 Identities=33% Similarity=0.451 Sum_probs=26.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
-|+||+ |..|.||||+|.||+++| ++.|.++..
T Consensus 5 ~i~I~g---t~s~~GKT~it~~L~~~L-~~~G~~V~~ 37 (451)
T PRK01077 5 ALVIAA---PASGSGKTTVTLGLMRAL-RRRGLRVQP 37 (451)
T ss_pred EEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCCcce
Confidence 367766 568999999999999999 578977553
No 156
>PRK05541 adenylylsulfate kinase; Provisional
Probab=70.02 E-value=6.6 Score=37.17 Aligned_cols=35 Identities=29% Similarity=0.552 Sum_probs=28.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
++|.+|+++++ .|.||||++.-|...|. .-+..++
T Consensus 5 ~~~~~I~i~G~----~GsGKst~a~~l~~~l~-~~~~~~~ 39 (176)
T PRK05541 5 PNGYVIWITGL----AGSGKTTIAKALYERLK-LKYSNVI 39 (176)
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcEE
Confidence 56899999996 59999999999999994 4455543
No 157
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=69.95 E-value=24 Score=30.38 Aligned_cols=60 Identities=10% Similarity=-0.022 Sum_probs=34.7
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 006673 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~a 502 (636)
+.+.+..+.++|++|++|+..--.++..+...+.....+-..+. ..=+..|+|-.+|-+.
T Consensus 99 ~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 99 KEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPII--PLSAETGKNIDSAFKI 158 (161)
T ss_pred HHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceE--EeecCCCCCHHHHHHH
Confidence 33444334489999999998765443344444444444332222 2337788887776554
No 158
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=69.68 E-value=71 Score=32.69 Aligned_cols=126 Identities=11% Similarity=0.040 Sum_probs=73.7
Q ss_pred cccCHHHHHHHHhHHHHHHHHHhh-cCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc-cccCccchhHHH
Q 006673 425 LNENVALVEAGCVNLARHIANTKA-YGANVV--VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH-HAHGGKGAVDLG 500 (636)
Q Consensus 425 ~~eNleaL~~G~~NL~kHIeNi~~-fGvPvV--VAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~-wa~GGeGa~eLA 500 (636)
.+.+..+++.|+ ...++.+++ ..+|++ +-+|-|..| .++ ..+.|++.|+..+.+-+. +. +.+-.
T Consensus 51 ~~~~~~a~~~g~---~~~v~~vr~~~~~Pl~lM~y~n~~~~~-~~~---~i~~~~~~Gadgvii~dlp~e-----~~~~~ 118 (244)
T PRK13125 51 RKSHRKVKGLDI---WPLLEEVRKDVSVPIILMTYLEDYVDS-LDN---FLNMARDVGADGVLFPDLLID-----YPDDL 118 (244)
T ss_pred HHHHHHHHHcCc---HHHHHHHhccCCCCEEEEEecchhhhC-HHH---HHHHHHHcCCCEEEECCCCCC-----cHHHH
Confidence 344567788888 567888876 689985 556887544 332 345567799974444321 32 11224
Q ss_pred HHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----Hh----CCCceeeCHHHHHHHHHHHhCCCCCCCee
Q 006673 501 IAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY----GASGVEYSEEAEKQIEMYTGQGFSGLPIC 564 (636)
Q Consensus 501 ~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IY----GA~~V~~S~~A~kqLk~ie~lG~~~LPVC 564 (636)
+..++.+.+..-..=++...+.|+ +.++.++. +| +..+-.|.+...++++++.++ .++.||+
T Consensus 119 ~~~~~~~~~~Gl~~~~~v~p~T~~-e~l~~~~~~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~-~~~~~i~ 189 (244)
T PRK13125 119 EKYVEIIKNKGLKPVFFTSPKFPD-LLIHRLSKLSPLFIYYGLRPATGVPLPVSVERNIKRVRNL-VGNKYLV 189 (244)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCH-HHHHHHHHhCCCEEEEEeCCCCCCCchHHHHHHHHHHHHh-cCCCCEE
Confidence 456666654222333444555554 45555554 32 224457889999999999987 3345665
No 159
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=69.58 E-value=4.1 Score=46.05 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=29.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+.| +||||+ |-|+|||||.-.+.+.++ .-+ ..++++=.|
T Consensus 241 ~~G-lilitG----ptGSGKTTtL~a~L~~l~-~~~-~~iiTiEDp 279 (486)
T TIGR02533 241 PHG-IILVTG----PTGSGKTTTLYAALSRLN-TPE-RNILTVEDP 279 (486)
T ss_pred CCC-EEEEEc----CCCCCHHHHHHHHHhccC-CCC-CcEEEEcCC
Confidence 444 999998 459999999988878884 434 457777665
No 160
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=69.53 E-value=19 Score=42.10 Aligned_cols=68 Identities=22% Similarity=0.212 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcCCcE-EEEecCCCCCCHHHHHH----HHHHHHHcC---CCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKAYGANV-VVAVNMFATDSKAELNA----VRNAAMAAG---AFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~fGvPv-VVAINrF~tDT~aEI~~----v~e~c~~~G---v~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.-..|++.++.+|+|. ||++|+..--++++++. +++++.+.| ++ ++... +.-|+|-.+|-+.+.+...
T Consensus 91 qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~-ii~VS--A~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 91 QTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAK-LFVTA--ATEGRGIDALREHLLQLPE 166 (614)
T ss_pred HHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCc-EEEEe--CCCCCCCHHHHHHHHHhhc
Confidence 3557788888899995 79999987655555554 444454445 33 33333 3457888888888876653
No 161
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.43 E-value=6.3 Score=43.31 Aligned_cols=42 Identities=21% Similarity=0.329 Sum_probs=31.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSl 114 (636)
..+||||+ |-|+|||||.-.|.+.++.......++++=+|.=
T Consensus 149 ~GlilI~G----~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICG----ETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHHHHhcCCCceEEEEecCch
Confidence 44899998 4599999999999999853233456788877744
No 162
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=69.30 E-value=26 Score=31.85 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=36.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 450 GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
+.|+||++|+-..-+..++....++....+.. +. ..=++=|+|-.+|-+.+.+.
T Consensus 113 ~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~ 166 (168)
T cd01897 113 NKPVIVVLNKIDLLTFEDLSEIEEEEELEGEE-VL--KISTLTEEGVDEVKNKACEL 166 (168)
T ss_pred cCCeEEEEEccccCchhhHHHHHHhhhhccCc-eE--EEEecccCCHHHHHHHHHHH
Confidence 89999999998765566666555665544444 32 33357788888887776654
No 163
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=68.98 E-value=26 Score=32.79 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=61.0
Q ss_pred cCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe----cCCCCCCHH--------HHHHHHHHHHHcCCCeEEEcCccccCcc
Q 006673 427 ENVALVEAGCVNLARHIANTKAYGANVVVAV----NMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 427 eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI----NrF~tDT~a--------EI~~v~e~c~~~Gv~~~avs~~wa~GGe 494 (636)
++-+ -++.+..+.+.|+-.+.+|.+.||.- +....++.+ -++.+.+.|++.|+. +++-++......
T Consensus 62 ~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-i~lE~~~~~~~~ 139 (213)
T PF01261_consen 62 ANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR-IALENHPGPFSE 139 (213)
T ss_dssp SSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE-EEEE-SSSSSSS
T ss_pred cchh-hHHHHHHHHHHHHHHHHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce-EEEecccCcccc
Confidence 3434 78888999999999999999998877 345555443 345566667788996 777777766665
Q ss_pred chh--HHHHHHHHHhhcCCCCCcccCCCC
Q 006673 495 GAV--DLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 495 Ga~--eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
... +-+..+++.+.. .++.++||..
T Consensus 140 ~~~~~~~~~~~l~~~~~--~~~~i~~D~~ 166 (213)
T PF01261_consen 140 TPFSVEEIYRLLEEVDS--PNVGICFDTG 166 (213)
T ss_dssp EESSHHHHHHHHHHHTT--TTEEEEEEHH
T ss_pred chhhHHHHHHHHhhcCC--CcceEEEehH
Confidence 552 334444554432 3488888753
No 164
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=68.80 E-value=55 Score=30.62 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=30.7
Q ss_pred CHHHHHHHHhHHHHHHHHHhhcCCcEEEEe----cCCCC-----CCHHHHH----HHHHHHHHcCCC
Q 006673 428 NVALVEAGCVNLARHIANTKAYGANVVVAV----NMFAT-----DSKAELN----AVRNAAMAAGAF 481 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~~fGvPvVVAI----NrF~t-----DT~aEI~----~v~e~c~~~Gv~ 481 (636)
.++...+ |+++=|+-+++.|.++|+.. +.... .+.++++ .++++|++.++.
T Consensus 77 ~~~~~~~---~~~~li~~~~~~~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~v~ 140 (183)
T cd04501 77 SLEMIKD---NIRSMVELAEANGIKVILASPLPVDDYPWKPQWLRPANKLKSLNRWLKDYARENGLL 140 (183)
T ss_pred CHHHHHH---HHHHHHHHHHHCCCcEEEEeCCCcCccccchhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 3455555 55555666678898877764 22221 2234444 367888888886
No 165
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=68.72 E-value=6 Score=38.97 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=28.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|++++|++ |.|.||||.+.-++.... ..|.+++
T Consensus 21 ~~g~i~~i~G----~~GsGKT~l~~~la~~~~-~~~~~v~ 55 (225)
T PRK09361 21 ERGTITQIYG----PPGSGKTNICLQLAVEAA-KNGKKVI 55 (225)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEE
Confidence 6799999999 789999999999987773 4455544
No 166
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=68.72 E-value=6.4 Score=40.09 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=32.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.+|..|..|+. .|.||||++-.|.+.| ...|+++.+
T Consensus 21 ~~~~viW~TGL----SGsGKSTiA~ale~~L-~~~G~~~y~ 56 (197)
T COG0529 21 QKGAVIWFTGL----SGSGKSTIANALEEKL-FAKGYHVYL 56 (197)
T ss_pred CCCeEEEeecC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 56889999997 5999999999999999 588998775
No 167
>PRK00784 cobyric acid synthase; Provisional
Probab=68.71 E-value=3.3 Score=46.52 Aligned_cols=32 Identities=41% Similarity=0.545 Sum_probs=26.4
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
-|+||+ |..|.||||+|.||.++| .+.|.++.
T Consensus 4 ~ifItG---T~T~vGKT~vt~~L~~~l-~~~G~~v~ 35 (488)
T PRK00784 4 ALMVQG---TASDAGKSTLVAGLCRIL-ARRGYRVA 35 (488)
T ss_pred eEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEe
Confidence 477776 568999999999999999 57787755
No 168
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=68.60 E-value=4 Score=38.60 Aligned_cols=26 Identities=35% Similarity=0.376 Sum_probs=21.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
|++|+|++ |.|.||||++-.|+..++
T Consensus 1 ~~~~~i~G----~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVG----PSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 56888888 579999999998888773
No 169
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.36 E-value=41 Score=33.96 Aligned_cols=60 Identities=10% Similarity=0.011 Sum_probs=44.5
Q ss_pred CHHHHHHHHhHHHHHHHHHhhcCCcEEEE---ecCCCCCCHHH--------HHHHHHHHHHcCCCeEEEcCcc
Q 006673 428 NVALVEAGCVNLARHIANTKAYGANVVVA---VNMFATDSKAE--------LNAVRNAAMAAGAFDAVVCSHH 489 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~~fGvPvVVA---INrF~tDT~aE--------I~~v~e~c~~~Gv~~~avs~~w 489 (636)
+-+..++.+.-+.++|+-.+.+|.+.||. -+.+.. +.+| ++.+.++|++.|+. .++-++.
T Consensus 81 ~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~a~~~gv~-l~iE~~~ 151 (275)
T PRK09856 81 DEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLT-PPNVIWGRLAENLSELCEYAENIGMD-LILEPLT 151 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC
Confidence 44567788899999999999999999876 222322 3444 67788888999996 7777663
No 170
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=68.17 E-value=3.6 Score=34.58 Aligned_cols=26 Identities=38% Similarity=0.698 Sum_probs=20.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+..+++++ |.|.||||++..|++.+.
T Consensus 2 ~~~~~l~G----~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 2 GEVILIVG----PPGSGKTTLARALARELG 27 (148)
T ss_pred CCEEEEEC----CCCCcHHHHHHHHHhccC
Confidence 34566665 589999999999988884
No 171
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.17 E-value=6.3 Score=44.22 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=28.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.++|++++ |-|.|||||+.-|+..| .+.|+++.+.
T Consensus 100 ~~vi~lvG----~~GvGKTTtaaKLA~~l-~~~G~kV~lV 134 (429)
T TIGR01425 100 QNVIMFVG----LQGSGKTTTCTKLAYYY-QRKGFKPCLV 134 (429)
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCCEEEE
Confidence 46788888 57999999999999999 4778876554
No 172
>PHA00729 NTP-binding motif containing protein
Probab=67.88 E-value=4.2 Score=42.01 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=19.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
-|++|| || |.||||++..|+..|+
T Consensus 19 nIlItG---~p-GvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 19 SAVIFG---KQ-GSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEC---CC-CCCHHHHHHHHHHHHH
Confidence 466777 34 9999999999999884
No 173
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=67.82 E-value=32 Score=33.08 Aligned_cols=59 Identities=8% Similarity=-0.052 Sum_probs=38.4
Q ss_pred hcCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 448 AYGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 448 ~fGvPvVVAINrF~tD--T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..++|+|++.|+-.-. .....+.+.++|++.+...+..+. ++=|+|-.++-+.+++.+-
T Consensus 108 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S--ak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 108 GEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETS--AKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred CCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 4689999999997753 223445577888888842233332 3446787777777766553
No 174
>PRK15453 phosphoribulokinase; Provisional
Probab=67.39 E-value=6.4 Score=42.23 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
+..+|.|||- .|.||||++-.|.+.| .+.+.+
T Consensus 4 k~piI~ItG~----SGsGKTTva~~l~~if-~~~~~~ 35 (290)
T PRK15453 4 KHPIIAVTGS----SGAGTTTVKRAFEKIF-RRENIN 35 (290)
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHH-hhcCCC
Confidence 4568999985 6999999999999999 466643
No 175
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=67.34 E-value=22 Score=40.13 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=59.8
Q ss_pred cchhccccccccCCCC-cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCc-EE
Q 006673 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (636)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvP-vV 454 (636)
|-|+| +++-.+|+. .|++++|....- |+.. .-..+|+..++.+|+| +|
T Consensus 126 GH~~f--i~~m~~g~~~~D~alLVVda~~----g~~~------------------------~qT~ehl~i~~~lgi~~iI 175 (460)
T PTZ00327 126 GHDIL--MATMLNGAAVMDAALLLIAANE----SCPQ------------------------PQTSEHLAAVEIMKLKHII 175 (460)
T ss_pred CHHHH--HHHHHHHHhhCCEEEEEEECCC----Cccc------------------------hhhHHHHHHHHHcCCCcEE
Confidence 34566 356666666 788888886541 2211 1235788888889996 78
Q ss_pred EEecCCCCCCHHHHHHHHHHHHH-------cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 455 VAVNMFATDSKAELNAVRNAAMA-------AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 455 VAINrF~tDT~aEI~~v~e~c~~-------~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
|+||+-.--++++++.+.+..++ .+++ ++. +=+.=|+|-.+|-+.+.+.+.
T Consensus 176 VvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~-iip--VSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 176 ILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAP-IIP--ISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEEecccccCHHHHHHHHHHHHHHHHhhccCCCe-EEE--eeCCCCCCHHHHHHHHHhhCC
Confidence 99999775555554443333322 2333 222 334456788788877776554
No 176
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=66.78 E-value=6.1 Score=44.61 Aligned_cols=98 Identities=21% Similarity=0.313 Sum_probs=63.1
Q ss_pred CCHHHHHHHcCCC-CcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 29 LHISEIAQELNLK-PNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 29 ~~I~~ia~~lgl~-~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.|+-+.|++.|++ ..|+|.+= |.. +..+.|-||+.| ||||||-=+++-| +..|.++.+
T Consensus 83 ~p~v~~A~~~gi~i~~dieL~~------------r~~--~~~p~vaITGTN------GKTTTTsli~~~l-~~~G~~~~l 141 (448)
T COG0771 83 HPLVEAAKAAGIEIIGDIELFY------------RLS--GEAPIVAITGTN------GKTTTTSLIAHLL-KAAGLDALL 141 (448)
T ss_pred CHHHHHHHHcCCcEEeHHHHHH------------Hhc--CCCCEEEEECCC------chHHHHHHHHHHH-HhcCCCcee
Confidence 3567777888876 23333332 111 345599999987 9999999999999 589998765
Q ss_pred EeeCCCCCCccccccCCCCCCceeee-----------cCccccccccchhhHHHH-HHhHHHHHHH
Q 006673 108 CLRQPSQGPTFGIKGGAAGGGYSQVI-----------PMDEFNLHLTGDIHAITA-ANNLLAAAID 161 (636)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysqv~-----------Pme~iNLHfTGD~hAIta-A~NLlaA~id 161 (636)
||--|..-++++ =+..|-||.|=.|..--| =-|+=..=+|
T Consensus 142 --------------gGNIG~p~l~~~~~~~~~d~~VlElSSfQL~~~~~~~P~iavilNi~~DHLD 193 (448)
T COG0771 142 --------------GGNIGTPALELLEQAEPADVYVLELSSFQLETTSSLRPEIAVILNISEDHLD 193 (448)
T ss_pred --------------ccccCccHHHhhcccCCCCEEEEEccccccccCccCCccEEEEecCCHHHhh
Confidence 455565555544 355688888876654332 1344444444
No 177
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=66.63 E-value=5.9 Score=38.49 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=22.1
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
+|.|+| +.|.||||++--|.+.|. ..|.+
T Consensus 1 ii~i~G----~sgsGKttla~~l~~~l~-~~~~~ 29 (179)
T cd02028 1 VVGIAG----PSGSGKTTFAKKLSNQLR-VNGIG 29 (179)
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHHH-HcCCC
Confidence 366777 579999999999999984 43443
No 178
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=66.60 E-value=7.2 Score=40.48 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=29.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+.+|+||+- -|+|||||.-.|.+.+. ..+ ..++.+=+|.
T Consensus 80 ~GlilisG~----tGSGKTT~l~all~~i~-~~~-~~iitiEdp~ 118 (264)
T cd01129 80 HGIILVTGP----TGSGKTTTLYSALSELN-TPE-KNIITVEDPV 118 (264)
T ss_pred CCEEEEECC----CCCcHHHHHHHHHhhhC-CCC-CeEEEECCCc
Confidence 458999984 59999999999999884 433 3567776663
No 179
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=66.57 E-value=34 Score=34.79 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=61.0
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEE-ecCCCC-CCHHH----HHHHHHH---HHHcCCCeEEEcCccccCc-
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFAT-DSKAE----LNAVRNA---AMAAGAFDAVVCSHHAHGG- 493 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVA-INrF~t-DT~aE----I~~v~e~---c~~~Gv~~~avs~~wa~GG- 493 (636)
+..++.+.-++.+..+++.|+-.+.+|.+.||. ...... ++++. ++.+++. +++.|+. +++-+++....
T Consensus 72 ~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~-l~lEn~~~~~~~ 150 (279)
T cd00019 72 LASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVV-IALETMAGQGNE 150 (279)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCE-EEEeCCCCCCCC
Confidence 445677788999999999999999999998776 222222 22322 2334444 4467986 88877765531
Q ss_pred -cchhHHHHHHHHHhhcCCCCCcccCCCCC
Q 006673 494 -KGAVDLGIAVQRACENVTQPLKFLYPLDV 522 (636)
Q Consensus 494 -eGa~eLA~aVv~a~e~~~s~fk~LY~~~~ 522 (636)
-...+-+..+++.+++ ...+..+||...
T Consensus 151 ~~~t~~~~~~li~~v~~-~~~~g~~lD~~h 179 (279)
T cd00019 151 IGSSFEELKEIIDLIKE-KPRVGVCIDTCH 179 (279)
T ss_pred CCCCHHHHHHHHHhcCC-CCCeEEEEEhhh
Confidence 2344555666766651 234777666543
No 180
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=66.51 E-value=4.4 Score=44.57 Aligned_cols=79 Identities=24% Similarity=0.317 Sum_probs=53.6
Q ss_pred ccccCeeeeecc-chhhhccC--CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCcccccc
Q 006673 46 DLYGKYKAKVLL-SVLDELEG--SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKG 122 (636)
Q Consensus 46 ~~YG~~kAKi~~-~~~~~~~~--~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKG 122 (636)
+.||.++++-.+ +.++.... ....|+++.++ |-|.||||++--|+.+|+ +. .|+ .-||.|-+||
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~G----PPGsGKStla~~La~~l~-~y-------s~t-~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLG----PVGGGKSSLVECLKRGLE-EY-------SKT-PEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEEC----CCCCCHHHHHHHHHHHHh-hh-------ccc-ccCceEEEEe
Confidence 578888886553 23333221 23457888887 679999999999999995 32 233 4689999988
Q ss_pred CCCCCCceeeecCcccccccc
Q 006673 123 GAAGGGYSQVIPMDEFNLHLT 143 (636)
Q Consensus 123 GAaGGGysqv~Pme~iNLHfT 143 (636)
+. ..-||-|-=||+-
T Consensus 119 ~~------~~sp~~e~Pl~l~ 133 (361)
T smart00763 119 NG------EESPMHEDPLHLF 133 (361)
T ss_pred cC------CCCCCccCCcccC
Confidence 65 5557777666653
No 181
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=66.08 E-value=4.7 Score=45.03 Aligned_cols=35 Identities=31% Similarity=0.284 Sum_probs=26.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+|++++ |.|+|||||+.-|+..|..+.|+++.+.
T Consensus 100 ~vi~~vG----~~GsGKTTtaakLA~~l~~~~g~kV~lV 134 (428)
T TIGR00959 100 TVILMVG----LQGSGKTTTCGKLAYYLKKKQGKKVLLV 134 (428)
T ss_pred EEEEEEC----CCCCcHHHHHHHHHHHHHHhCCCeEEEE
Confidence 4566654 6799999999999999832568876644
No 182
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=65.17 E-value=1.4e+02 Score=32.10 Aligned_cols=101 Identities=19% Similarity=0.180 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCcEEEEecCCC----CCCHHHHHHHHHHHHHcCCCeEEEcCc---cccCc------cchhHHHHHHHH
Q 006673 439 LARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAFDAVVCSH---HAHGG------KGAVDLGIAVQR 505 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~----tDT~aEI~~v~e~c~~~Gv~~~avs~~---wa~GG------eGa~eLA~aVv~ 505 (636)
..+.++..+.+++|++|-|+... .+..+|+..+.+.+.. .+. +..-+. ...|+ +-..++.++|.+
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~~~~~~~~d~~~~~~~~~~-~ad-~ielN~scP~~~g~~~~~~~~~~~~iv~av~~ 194 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDTPLEDAVEDYVIGVRKLGP-YAD-YLVVNVSSPNTPGLRDLQGKEALRELLTAVKE 194 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCCcccccHHHHHHHHHHHHh-hCC-EEEEECCCCCCCccccccCHHHHHHHHHHHHH
Confidence 33444444447899999998775 2224455444344332 243 333222 12232 223345555555
Q ss_pred Hhhc----CCCCCcccCCCCCCHHHHHHHHHH-H--hCCCceeeCH
Q 006673 506 ACEN----VTQPLKFLYPLDVSIKEKIDTIAR-S--YGASGVEYSE 544 (636)
Q Consensus 506 a~e~----~~s~fk~LY~~~~~L~eKIetIA~-I--YGA~~V~~S~ 544 (636)
.+.. .|=-.|.-. +.+. +-+..+|+ . .|+++|..+.
T Consensus 195 ~~~~~~~~~Pv~vKl~~--~~~~-~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 195 ERNKLGKKVPLLVKIAP--DLSD-EELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred HHhhcccCCCeEEEeCC--CCCH-HHHHHHHHHHHHcCCcEEEEEC
Confidence 5431 121133321 2332 34566776 3 5889988543
No 183
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=65.05 E-value=8.5 Score=42.79 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=21.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.|+.|++.+ | -|.|||||+..|+-.+
T Consensus 220 ~~~~i~~vG--p--tGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 220 QGGVVALVG--P--TGVGKTTTLAKLAARY 245 (424)
T ss_pred CCcEEEEEC--C--CCCCHHHHHHHHHHHH
Confidence 367777764 4 4999999999999888
No 184
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.80 E-value=5.7 Score=39.48 Aligned_cols=24 Identities=46% Similarity=0.524 Sum_probs=18.3
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
|.|.|||||..=|+.-+..+ |++.
T Consensus 9 ptGvGKTTt~aKLAa~~~~~-~~~v 32 (196)
T PF00448_consen 9 PTGVGKTTTIAKLAARLKLK-GKKV 32 (196)
T ss_dssp STTSSHHHHHHHHHHHHHHT-T--E
T ss_pred CCCCchHhHHHHHHHHHhhc-cccc
Confidence 67999999999999999534 6654
No 185
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=64.41 E-value=5.4 Score=38.47 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=13.6
Q ss_pred CCCCCcchhHHHHHHHH
Q 006673 81 PLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL 97 (636)
|.|.||||++--|...|
T Consensus 7 ~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 7 GSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999997776555
No 186
>PLN02348 phosphoribulokinase
Probab=64.24 E-value=8.7 Score=42.83 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=20.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
-+|-|+| +.|.||||++-.|.+.|+
T Consensus 50 ~IIGIaG----~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 50 VVIGLAA----DSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 3666776 579999999999999995
No 187
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=64.15 E-value=6.2 Score=37.59 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.|++|++++. .|.||||.+--|.+.+.
T Consensus 1 ~~~~i~l~G~----~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 1 TGRIIILNGG----SSAGKSSIARALQSVLA 27 (175)
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHhhC
Confidence 3789999984 69999999999988763
No 188
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=64.09 E-value=4.8 Score=47.20 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=27.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
-|+|| +|..|.|||++|.||.++| .+.|.++ ...|
T Consensus 4 ~l~I~---~T~t~~GKT~vslgL~~~L-~~~G~~V-g~fK 38 (684)
T PRK05632 4 SIYLA---PTGTGVGLTSVSLGLMRAL-ERKGVKV-GFFK 38 (684)
T ss_pred EEEEE---ECCCCCCHHHHHHHHHHHH-HhCCCeE-EEeC
Confidence 35555 6788999999999999999 5778874 4466
No 189
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=64.00 E-value=9.3 Score=36.53 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
..|.+|++++.+ |.||||++-.|...|. .-|..
T Consensus 16 ~~~~~i~i~G~~----GsGKstla~~l~~~l~-~~~~~ 48 (184)
T TIGR00455 16 HRGVVIWLTGLS----GSGKSTIANALEKKLE-SKGYR 48 (184)
T ss_pred CCCeEEEEECCC----CCCHHHHHHHHHHHHH-HcCCc
Confidence 568999999974 9999999999999883 44544
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=63.91 E-value=6.7 Score=33.54 Aligned_cols=25 Identities=40% Similarity=0.504 Sum_probs=21.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.++.+|+| |.|.|||||.+-+...+
T Consensus 10 ~~~~vv~g----~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQG----PPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHH
Confidence 56777776 78999999999998888
No 191
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=63.85 E-value=31 Score=30.13 Aligned_cols=63 Identities=14% Similarity=0.164 Sum_probs=36.3
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCC--CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFAT--DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~t--DT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~a 502 (636)
..+.+.++.+.. .+.|++|++|+..- +.+.-.+.+++++.+.++. ++.+.... |+|-.++-+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~sa~~--~~~i~~~~~~ 156 (159)
T cd00154 89 ENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLL-FFETSAKT--GENVEELFQS 156 (159)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCe-EEEEecCC--CCCHHHHHHH
Confidence 344444444444 46999999999866 3333345566777777775 44443322 4555554443
No 192
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=63.81 E-value=36 Score=29.91 Aligned_cols=63 Identities=16% Similarity=0.082 Sum_probs=38.2
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCC-CHHHHHHHHHHHHHcC-CCeEEEcCccccCccchhHHHHHHH
Q 006673 440 ARHIANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tD-T~aEI~~v~e~c~~~G-v~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
.+.++.++.++.|+++++|+.... ++++++.+.+...+.. ...+..++ ++=++|-.+|-+.+.
T Consensus 101 ~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~~~~l~~~l~ 165 (168)
T cd04163 101 EFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS--ALKGENVDELLEEIV 165 (168)
T ss_pred HHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE--eccCCChHHHHHHHH
Confidence 344455666799999999998776 5667776666655443 22233322 344566655555443
No 193
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=63.68 E-value=23 Score=32.09 Aligned_cols=55 Identities=24% Similarity=0.072 Sum_probs=33.3
Q ss_pred cCCcEEEEecCCCCCCHHHHH--HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKAELN--AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~--~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
.++|+||++|+.....+.++. ....+....+.. +..+. ++=|.|-.+|-+.+.+.
T Consensus 106 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 106 KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLK-FFKTS--ALRGVGYEEPFESLARA 162 (164)
T ss_pred CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEe--CCCCCChHHHHHHHHHH
Confidence 579999999998654443332 234455556664 43333 34467777776666554
No 194
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=63.41 E-value=7 Score=33.04 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=16.4
Q ss_pred CCCCCcchhHHHHHHHHh
Q 006673 81 PLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~ 98 (636)
|.|.|||++.+.+...+.
T Consensus 8 ~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 8 PTGSGKTLAALLPILELL 25 (144)
T ss_pred CCCCchhHHHHHHHHHHH
Confidence 679999999999999884
No 195
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=63.32 E-value=9.6 Score=39.73 Aligned_cols=40 Identities=23% Similarity=0.068 Sum_probs=29.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
|.++|.+ ..-|.||||++..|+++| ++.|+++.+.=-.|+
T Consensus 3 ~i~~i~~---~KGGvGKSt~a~~la~~l-~~~g~~vl~iD~D~~ 42 (241)
T PRK13886 3 KIHMVLQ---GKGGVGKSFIAATIAQYK-ASKGQKPLCIDTDPV 42 (241)
T ss_pred eEEEEec---CCCCCcHHHHHHHHHHHH-HhCCCCEEEEECCCC
Confidence 3455443 578999999999999999 578988654434554
No 196
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=63.23 E-value=90 Score=31.25 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=55.4
Q ss_pred HHhhcCCcEEEEecCCCC-------CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCccc
Q 006673 445 NTKAYGANVVVAVNMFAT-------DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 517 (636)
Q Consensus 445 Ni~~fGvPvVVAINrF~t-------DT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~L 517 (636)
..+++|+|++| |-+.. .++++++...+.|.+.|+. ++-.. |. +..+.-+++++.+. -+. ..
T Consensus 117 ~~~~~g~~~ii--e~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD-~Ik~~-~~----~~~~~~~~i~~~~~---~pv-v~ 184 (235)
T cd00958 117 EAHKYGLPLIA--WMYPRGPAVKNEKDPDLIAYAARIGAELGAD-IVKTK-YT----GDAESFKEVVEGCP---VPV-VI 184 (235)
T ss_pred HHHHcCCCEEE--EEeccCCcccCccCHHHHHHHHHHHHHHCCC-EEEec-CC----CCHHHHHHHHhcCC---CCE-EE
Confidence 34579999887 54441 2467888766677789996 54442 43 24666666666542 222 12
Q ss_pred CC--CCCCHHHHHHHHHH--HhCCCceeeCHHH
Q 006673 518 YP--LDVSIKEKIDTIAR--SYGASGVEYSEEA 546 (636)
Q Consensus 518 Y~--~~~~L~eKIetIA~--IYGA~~V~~S~~A 546 (636)
-. ...+.++-++.+.. -+||++|.+....
T Consensus 185 ~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i 217 (235)
T cd00958 185 AGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNI 217 (235)
T ss_pred eCCCCCCCHHHHHHHHHHHHHcCCcEEEechhh
Confidence 12 22567776777766 6899998877654
No 197
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=63.12 E-value=10 Score=37.31 Aligned_cols=33 Identities=27% Similarity=0.433 Sum_probs=25.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCcE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKV 105 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~-aL~~~lg~~~ 105 (636)
+.|.+++|++ |.|.||||++.-++- ++ +-|+++
T Consensus 18 ~~G~~~~i~G----~~G~GKT~l~~~~~~~~~--~~g~~~ 51 (229)
T TIGR03881 18 PRGFFVAVTG----EPGTGKTIFCLHFAYKGL--RDGDPV 51 (229)
T ss_pred cCCeEEEEEC----CCCCChHHHHHHHHHHHH--hcCCeE
Confidence 6799999999 779999999987654 44 236554
No 198
>PF05729 NACHT: NACHT domain
Probab=62.79 E-value=7.2 Score=35.17 Aligned_cols=25 Identities=36% Similarity=0.411 Sum_probs=21.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++++|+| ++|.||||+..-+++.+.
T Consensus 1 r~l~I~G----~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISG----EPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEEC----CCCCChHHHHHHHHHHHH
Confidence 3677777 589999999999999994
No 199
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=62.57 E-value=25 Score=32.43 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=38.3
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
...++|+|+++|+..-....+-+...++++..|....-+-..=++=|+|-.+|.+.+.+.+
T Consensus 116 ~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 116 LENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 3578999999999875322222334555666666311122344567889888888877654
No 200
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=62.50 E-value=58 Score=33.22 Aligned_cols=91 Identities=9% Similarity=0.031 Sum_probs=54.3
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCC----CCCCHHH-------HHHHHHHHHHcCCCeEEEcCccccCcc
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMF----ATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF----~tDT~aE-------I~~v~e~c~~~Gv~~~avs~~wa~GGe 494 (636)
.+|.+.-++.+..++++|+-.+.+|.|+|+. +-. ..++++. +..+.++|++.|+. +++-.+...=-.
T Consensus 83 ~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~-l~lE~~~~~~~~ 160 (279)
T TIGR00542 83 SKDKAVRQQGLEIMEKAIQLARDLGIRTIQL-AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVT-LAVEIMDTPFMS 160 (279)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHhCCCEEEe-cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCCchhc
Confidence 3466677889999999999999999998864 421 2233433 33445667788996 666554111011
Q ss_pred chhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 495 GAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 495 Ga~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
-..+ +.++++.+.. ..++.+||.-
T Consensus 161 t~~~-~~~li~~v~~--~~v~~~~D~~ 184 (279)
T TIGR00542 161 SISK-WLKWDHYLNS--PWFTLYPDIG 184 (279)
T ss_pred CHHH-HHHHHHHcCC--CceEEEeCcC
Confidence 1112 2234444432 3577777663
No 201
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=62.49 E-value=8.5 Score=39.13 Aligned_cols=46 Identities=35% Similarity=0.468 Sum_probs=39.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
+|+++++|| |.|.||||+.--|-+.. .+....-.+=|+|=-|=+=|
T Consensus 3 ~G~l~vlsg----PSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G 48 (191)
T COG0194 3 KGLLIVLSG----PSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDG 48 (191)
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCC
Confidence 699999998 89999999999998888 47888888999998885544
No 202
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=62.48 E-value=5.3 Score=38.76 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=22.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
+|-|+| |.|.||||++--|.+.|+ ..|..+
T Consensus 1 IIgI~G----~sgSGKTTla~~L~~~L~-~~~~~~ 30 (194)
T PF00485_consen 1 IIGIAG----PSGSGKTTLAKRLAQILN-KRGIPA 30 (194)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHHT-TCTTTC
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHhC-ccCcCc
Confidence 355555 579999999999999995 556553
No 203
>COG1838 FumA Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]
Probab=62.44 E-value=8.4 Score=38.94 Aligned_cols=153 Identities=22% Similarity=0.302 Sum_probs=90.5
Q ss_pred CHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCc--CceeeecCceeEEcccCccccccCCchHHHHHHH
Q 006673 279 SLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINP--TLMQTLEGTPVLVHAGPFANIAHGNSSIVADKIA 356 (636)
Q Consensus 279 ~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkP--NLvQTlEgtPa~VHgGPFANIAhG~nSviAt~~a 356 (636)
++.+|| .|.+|. .+|+-+|++|.-- .=|.+.++- -|=+.|+|.+ +.|+||--+-
T Consensus 12 ~i~~Lk--vGd~v~---lsG~I~t~RD~AH-----~ri~e~~~~ge~lP~dl~g~~-Iy~aGP~~~~------------- 67 (184)
T COG1838 12 EIAKLK--VGDVVY---LSGKIVTGRDAAH-----KRLLEMLDRGEELPVDLKGHI-IYYAGPVKTK------------- 67 (184)
T ss_pred HHHhcc--CCCEEE---EeeEEEEehhHHH-----HHHHHHHhcCCCCCccCCCCE-EEEeccccCC-------------
Confidence 344554 677664 6899999999533 334455520 1126777765 5799997654
Q ss_pred HhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEe-------eehhhhhcCCCCCccCCC--CC-ccccc-
Q 006673 357 LKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVA-------TIRALKMHGGGPQVVAGK--PL-DHAYL- 425 (636)
Q Consensus 357 Lklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVa-------TvRALK~HGG~~~~~~g~--pL-~~~l~- 425 (636)
++|+|--+|-=+..=+++|.+.---+.|+. ++|. |++|+|=||++....+|- .| -+..+
T Consensus 68 ------~~~~v~s~GPTTs~RMd~~~~~~l~~~G~~----~~iGKG~~~~~~~ea~~~~kavyl~~~gGaA~L~a~~IK~ 137 (184)
T COG1838 68 ------DGWVVGSAGPTTSGRMDKFTDELLEQTGVL----AMIGKGGRGPETVEACKKHKAVYLVAPGGAAALAAKSIKS 137 (184)
T ss_pred ------CCceeeccCCcchhhhhhhHHHHHHhcCeE----EEEecCCcCHHHHHHHHHcCeEEEEccchHHHHHHHhhhh
Confidence 399999999999999999988655554432 3332 779999998877655441 00 00000
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHH
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELN 469 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~ 469 (636)
.+++...+-|++-+ +++ -++.| |++|+|-..-.+--+|..
T Consensus 138 ~~~v~~~dLGmEAi-w~l-eVe~f--PliV~iDs~Gn~~~~~~~ 177 (184)
T COG1838 138 VRCVAYEDLGMEAI-WEL-EVEDF--PLIVAIDSKGNSLFKEGP 177 (184)
T ss_pred eeeEeecccChhhe-eEE-Eeccc--cEEEEEeCCCcChhhhcc
Confidence 11222222222100 111 12344 999999877776666655
No 204
>PRK13764 ATPase; Provisional
Probab=62.26 E-value=8.2 Score=45.08 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=29.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
..+.||||+ |.|.||||+...|.+.++ .-+ +.+.++-+|
T Consensus 256 ~~~~ILIsG----~TGSGKTTll~AL~~~i~-~~~-riV~TiEDp 294 (602)
T PRK13764 256 RAEGILIAG----APGAGKSTFAQALAEFYA-DMG-KIVKTMESP 294 (602)
T ss_pred cCCEEEEEC----CCCCCHHHHHHHHHHHHh-hCC-CEEEEECCC
Confidence 356699998 459999999999999995 434 345466554
No 205
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=62.14 E-value=18 Score=35.91 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC
Q 006673 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA 480 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~--tDT~aEI~~v~e~c~~~Gv 480 (636)
...+-|+.++++|+++.|...-++ .|+++|++.+.+++.+.|.
T Consensus 144 ~v~~~i~~l~~~g~~~~v~~vv~~~~~~n~~ei~~l~~~~~~l~~ 188 (235)
T TIGR02493 144 PTLDFAKYLAKRNKPIWIRYVLVPGYTDSEEDIEALAEFVKTLPN 188 (235)
T ss_pred HHHHHHHHHHhCCCcEEEEEeeeCCcCCCHHHHHHHHHHHHhCCC
Confidence 445556677788999877666666 6899999999999999994
No 206
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=62.08 E-value=46 Score=31.23 Aligned_cols=99 Identities=18% Similarity=0.158 Sum_probs=59.0
Q ss_pred HHHHHHHHHhhc---CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCC
Q 006673 438 NLARHIANTKAY---GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPL 514 (636)
Q Consensus 438 NL~kHIeNi~~f---GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~f 514 (636)
.+.+|++.+.+. ++|+++-.+-..+-+.+++..+.+.+++.|+.-+-.+..|..|+.. .+..+++.+.... +.+|
T Consensus 98 ~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~-~~~~~~i~~~~~~-~~~v 175 (201)
T cd00945 98 EVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGGGAT-VEDVKLMKEAVGG-RVGV 175 (201)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCC-HHHHHHHHHhccc-CCcE
Confidence 577777777764 9998888775444567788877777788999745455556654444 4445556655421 1234
Q ss_pred cccCCCCCCHHHHHHHHHH--HhCCCceeeC
Q 006673 515 KFLYPLDVSIKEKIDTIAR--SYGASGVEYS 543 (636)
Q Consensus 515 k~LY~~~~~L~eKIetIA~--IYGA~~V~~S 543 (636)
...-..+ ++ +.+.. ..||+++.++
T Consensus 176 ~~~gg~~-~~----~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 176 KAAGGIK-TL----EDALAAIEAGADGIGTS 201 (201)
T ss_pred EEECCCC-CH----HHHHHHHHhccceeecC
Confidence 3343333 22 22333 4588887653
No 207
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=62.01 E-value=21 Score=33.05 Aligned_cols=68 Identities=12% Similarity=0.099 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 436 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
+.++.+.++++++ .++|+||+.|+.....+.+ .+.+++++.+.++.-+-+| +.-|+|-.++-+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~S---a~~~~~i~~~~~~~~~~ 164 (168)
T cd01866 92 FNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETS---AKTASNVEEAFINTAKE 164 (168)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe---CCCCCCHHHHHHHHHHH
Confidence 3355666666655 4899999999976542222 3345677777777522233 34555655555444433
No 208
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=61.79 E-value=1e+02 Score=31.70 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=76.0
Q ss_pred CHHHHHHHH--hHHHHHHHHHhh-cCCcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 006673 428 NVALVEAGC--VNLARHIANTKA-YGANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (636)
Q Consensus 428 NleaL~~G~--~NL~kHIeNi~~-fGvPvVV--AINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~a 502 (636)
+..||+.|+ ......++.+|+ ..+|+++ -+|-+-+=- ++...+.|.++|+..+.+-+.-. |-.+.
T Consensus 51 ~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G---~~~fi~~~~~aG~~giiipDl~~-------ee~~~ 120 (242)
T cd04724 51 SERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG---LERFLRDAKEAGVDGLIIPDLPP-------EEAEE 120 (242)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC---HHHHHHHHHHCCCcEEEECCCCH-------HHHHH
Confidence 355777776 456666777775 5789776 446432111 23345567889997666644321 23456
Q ss_pred HHHHhhcCCCCCcccCCCCCCHH--HHHHHHHH--Hh-----CCCce--eeCHHHHHHHHHHHhCCCCCCCeeEe
Q 006673 503 VQRACENVTQPLKFLYPLDVSIK--EKIDTIAR--SY-----GASGV--EYSEEAEKQIEMYTGQGFSGLPICMA 566 (636)
Q Consensus 503 Vv~a~e~~~s~fk~LY~~~~~L~--eKIetIA~--IY-----GA~~V--~~S~~A~kqLk~ie~lG~~~LPVCmA 566 (636)
+++.|.+..-..-++...+.|.+ ++|...+. +| |..+. .|.+...+.++++++. -++|||+-
T Consensus 121 ~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~--~~~pI~vg 193 (242)
T cd04724 121 FREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY--TDLPIAVG 193 (242)
T ss_pred HHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc--CCCcEEEE
Confidence 66777543233456667666655 33433223 44 33333 2678888999999986 48999973
No 209
>PRK06852 aldolase; Validated
Probab=61.58 E-value=84 Score=34.10 Aligned_cols=104 Identities=16% Similarity=0.055 Sum_probs=62.4
Q ss_pred HHhHHHHHHHHHhhcCCcEEE---EecCCCCC-C-HHHHHHHHHHHHHcCCCeEEEcCccc-cCccchhHHHHHHHHHhh
Q 006673 435 GCVNLARHIANTKAYGANVVV---AVNMFATD-S-KAELNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVV---AINrF~tD-T-~aEI~~v~e~c~~~Gv~~~avs~~wa-~GGeGa~eLA~aVv~a~e 508 (636)
=+.||.+=++-.++||+|+|+ .-.....| . .+-|....+.|.++|+. ++-.-|. +=|+|-.+.=++|++.|.
T Consensus 152 ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGAD--IVKv~y~~~~~~g~~e~f~~vv~~~g 229 (304)
T PRK06852 152 MLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGAD--FVKVNYPKKEGANPAELFKEAVLAAG 229 (304)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCC--EEEecCCCcCCCCCHHHHHHHHHhCC
Confidence 366888889999999999886 33322222 2 35777788888999995 4555554 223344444445777662
Q ss_pred cCCCCCcccCCCCCCHHHHHHHHHH-H--hCCCceee
Q 006673 509 NVTQPLKFLYPLDVSIKEKIDTIAR-S--YGASGVEY 542 (636)
Q Consensus 509 ~~~s~fk~LY~~~~~L~eKIetIA~-I--YGA~~V~~ 542 (636)
+.+.=+.=-...+.++=++.+-. + -||.||.+
T Consensus 230 --~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~ 264 (304)
T PRK06852 230 --RTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNAT 264 (304)
T ss_pred --CCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeee
Confidence 12111222233355555555555 4 48889876
No 210
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=61.54 E-value=26 Score=37.01 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=74.4
Q ss_pred CccccccCCchHHHHHHHHhh-cCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhh---hcCCCCCc
Q 006673 339 PFANIAHGNSSIVADKIALKL-VGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALK---MHGGGPQV 414 (636)
Q Consensus 339 PFANIAhG~nSviAt~~aLkl-ag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK---~HGG~~~~ 414 (636)
|+.+..-.+--.-.+++.-|. +|- ||+||-..|..+. .++|++ +||..|+..=.+.=|.-+..+| +.-.+
T Consensus 138 Pe~Hp~~~~~~~d~~~L~~Ki~aGA-~f~iTQ~~Fd~~~-~~~f~~-~~~~~gi~~PIi~GI~pi~s~~~~~~~~~~--- 211 (281)
T TIGR00677 138 PEGHPEAESVELDLKYLKEKVDAGA-DFIITQLFYDVDN-FLKFVN-DCRAIGIDCPIVPGIMPINNYASFLRRAKW--- 211 (281)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCC-CEeeccceecHHH-HHHHHH-HHHHcCCCCCEEeeccccCCHHHHHHHHhc---
Confidence 666544333222234555554 332 7999999999876 678888 7999998754433333333333 22122
Q ss_pred cCCCCCcccccc------cCHHH-HHHHHhHHHHHHHHHhhcCCcE--EEEecCCCCCCHHHHHHHHHHHHHcCC
Q 006673 415 VAGKPLDHAYLN------ENVAL-VEAGCVNLARHIANTKAYGANV--VVAVNMFATDSKAELNAVRNAAMAAGA 480 (636)
Q Consensus 415 ~~g~pL~~~l~~------eNlea-L~~G~~NL~kHIeNi~~fGvPv--VVAINrF~tDT~aEI~~v~e~c~~~Gv 480 (636)
.|..+|+++.+ .+.++ -+.|++--...|+.+..+|+|- +.++|++ +.+.+.|+.+|.
T Consensus 212 -~Gi~vP~~l~~~l~~~~~~~~~~~~~gi~~a~~~~~~l~~~G~~giH~~t~n~~--------~~~~~il~~l~~ 277 (281)
T TIGR00677 212 -SKTKIPQEIMSRLEPIKDDDEAVRDYGIELIVEMCQKLLASGIKGLHFYTLNLE--------KAALMILERLGL 277 (281)
T ss_pred -CCCCCCHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHCCCCeeEEeccCch--------HHHHHHHHHcCC
Confidence 34456665544 23333 3568877777888888888774 3456665 455666666554
No 211
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=61.45 E-value=9.8 Score=42.90 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+++|++++ |.|.|||||+.-|+..+....|+++.+.
T Consensus 222 ~~~vi~lvG----ptGvGKTTtaaKLA~~~~~~~G~~V~Li 258 (432)
T PRK12724 222 QRKVVFFVG----PTGSGKTTSIAKLAAKYFLHMGKSVSLY 258 (432)
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHHHhcCCeEEEe
Confidence 366788876 6799999999999975533457766543
No 212
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=61.31 E-value=8.6 Score=40.44 Aligned_cols=151 Identities=19% Similarity=0.265 Sum_probs=86.9
Q ss_pred eehhhhh--cCCCCCccCCCCCcc------cccccCHHHHHHHHhHHHHH---HHHHh-h-cCCcEEEE--ecCCCCCCH
Q 006673 401 TIRALKM--HGGGPQVVAGKPLDH------AYLNENVALVEAGCVNLARH---IANTK-A-YGANVVVA--VNMFATDSK 465 (636)
Q Consensus 401 TvRALK~--HGG~~~~~~g~pL~~------~l~~eNleaL~~G~~NL~kH---IeNi~-~-fGvPvVVA--INrF~tDT~ 465 (636)
|++.++. .+|++-.++|-|-.+ -..+-+..||+.|+ |+.+= ++.++ + ..+|+|+- .|-+- .
T Consensus 26 ~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~-~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~---~ 101 (259)
T PF00290_consen 26 TLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGF-TLEKIFELVKEIRKKEPDIPIVLMTYYNPIF---Q 101 (259)
T ss_dssp HHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT---HHHHHHHHHHHHHHCTSSEEEEEE-HHHHH---H
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CHHHHHHHHHHHhccCCCCCEEEEeeccHHh---c
Confidence 3444444 567766666655443 23456778889887 45544 45555 3 56777653 23210 1
Q ss_pred HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----Hh-----
Q 006673 466 AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY----- 535 (636)
Q Consensus 466 aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IY----- 535 (636)
--++...+.|+++|+..+++-+.= .|-++.+.++|++..=++-++-..+ +-.++|+.|++ ||
T Consensus 102 ~G~e~F~~~~~~aGvdGlIipDLP-------~ee~~~~~~~~~~~gl~~I~lv~p~-t~~~Ri~~i~~~a~gFiY~vs~~ 173 (259)
T PF00290_consen 102 YGIERFFKEAKEAGVDGLIIPDLP-------PEESEELREAAKKHGLDLIPLVAPT-TPEERIKKIAKQASGFIYLVSRM 173 (259)
T ss_dssp H-HHHHHHHHHHHTEEEEEETTSB-------GGGHHHHHHHHHHTT-EEEEEEETT-S-HHHHHHHHHH-SSEEEEESSS
T ss_pred cchHHHHHHHHHcCCCEEEEcCCC-------hHHHHHHHHHHHHcCCeEEEEECCC-CCHHHHHHHHHhCCcEEEeeccC
Confidence 224556778889999877777653 2456677777765221222333322 45666777764 55
Q ss_pred CCCce--eeCHHHHHHHHHHHhCCCCCCCeeE
Q 006673 536 GASGV--EYSEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 536 GA~~V--~~S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
|..|. .++....+.++++++.. ++|||+
T Consensus 174 GvTG~~~~~~~~l~~~i~~ik~~~--~~Pv~v 203 (259)
T PF00290_consen 174 GVTGSRTELPDELKEFIKRIKKHT--DLPVAV 203 (259)
T ss_dssp SSSSTTSSCHHHHHHHHHHHHHTT--SS-EEE
T ss_pred CCCCCcccchHHHHHHHHHHHhhc--CcceEE
Confidence 33333 46678899999999985 999997
No 213
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=61.22 E-value=1e+02 Score=33.06 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=32.9
Q ss_pred HHHhHHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 006673 434 AGCVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (636)
Q Consensus 434 ~G~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~av 485 (636)
.|.....++++.+++ +++|++|-|+- .+.+|+..+.+.++++|+..+.+
T Consensus 84 ~g~d~~~~~i~~~~~~~~~pvi~sI~g---~~~~e~~~~a~~~~~agad~iel 133 (334)
T PRK07565 84 VGPEEYLELIRRAKEAVDIPVIASLNG---SSAGGWVDYARQIEQAGADALEL 133 (334)
T ss_pred cCHHHHHHHHHHHHHhcCCcEEEEecc---CCHHHHHHHHHHHHHcCCCEEEE
Confidence 355556777777755 68999988866 34556666666677888863444
No 214
>PRK07667 uridine kinase; Provisional
Probab=61.19 E-value=11 Score=36.83 Aligned_cols=31 Identities=16% Similarity=0.162 Sum_probs=23.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
..+|.++| +-|.||||++--|.+.|+ ..|.+
T Consensus 17 ~~iIgI~G----~~gsGKStla~~L~~~l~-~~~~~ 47 (193)
T PRK07667 17 RFILGIDG----LSRSGKTTFVANLKENMK-QEGIP 47 (193)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHHH-hCCCc
Confidence 35777776 469999999999999994 54443
No 215
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=61.07 E-value=24 Score=32.22 Aligned_cols=69 Identities=13% Similarity=0.126 Sum_probs=43.9
Q ss_pred HhHHHHHHHHHhhc---CCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 436 CVNLARHIANTKAY---GANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 436 ~~NL~kHIeNi~~f---GvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
|.++...++.++++ ++|+|++.|+..-..+. ..+.++++|++.++. +..+ =++-|+|-.++=+.+.+.+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 90 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIP-FLET--SAKNATNVEQAFMTMAREI 163 (166)
T ss_pred HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCe-EEEE--ECCCCcCHHHHHHHHHHHH
Confidence 44555556665553 68999999997653332 235567788888875 4332 2445677777766666544
No 216
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=61.06 E-value=48 Score=35.39 Aligned_cols=151 Identities=17% Similarity=0.235 Sum_probs=94.6
Q ss_pred eehhhh--hcCCCCCccCCCCCcc------cccccCHHHHHHHHhHHHHHHHHHhhc-----CCcEEE--EecC-CCCCC
Q 006673 401 TIRALK--MHGGGPQVVAGKPLDH------AYLNENVALVEAGCVNLARHIANTKAY-----GANVVV--AVNM-FATDS 464 (636)
Q Consensus 401 TvRALK--~HGG~~~~~~g~pL~~------~l~~eNleaL~~G~~NL~kHIeNi~~f-----GvPvVV--AINr-F~tDT 464 (636)
|+..+| -.+|+.-.++|-|-.+ ....-+..||+.|+ .+.+-.|-++++ .+|+|. ..|- |.-.
T Consensus 33 s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~-t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~G- 110 (265)
T COG0159 33 SLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGV-TLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYG- 110 (265)
T ss_pred HHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhh-
Confidence 444455 3466666666655443 34456788999887 455555555443 356665 3453 4332
Q ss_pred HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCC--HHHHHHHHHH--Hh-----
Q 006673 465 KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVS--IKEKIDTIAR--SY----- 535 (636)
Q Consensus 465 ~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~--L~eKIetIA~--IY----- 535 (636)
++...+.|++.|+..+.+-+. -.|.++.+.+.|++..-++-||-..+.+ .-+||-..++ ||
T Consensus 111 ---ie~F~~~~~~~GvdGlivpDL-------P~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~ 180 (265)
T COG0159 111 ---IEKFLRRAKEAGVDGLLVPDL-------PPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRM 180 (265)
T ss_pred ---HHHHHHHHHHcCCCEEEeCCC-------ChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecc
Confidence 344567789999988888776 4678888999887533344555555543 4455555554 44
Q ss_pred CCCceeeC--HHHHHHHHHHHhCCCCCCCeeE
Q 006673 536 GASGVEYS--EEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 536 GA~~V~~S--~~A~kqLk~ie~lG~~~LPVCm 565 (636)
|..|+.-. ....+.++++++. .++|||.
T Consensus 181 GvTG~~~~~~~~~~~~v~~vr~~--~~~Pv~v 210 (265)
T COG0159 181 GVTGARNPVSADVKELVKRVRKY--TDVPVLV 210 (265)
T ss_pred cccCCCcccchhHHHHHHHHHHh--cCCCeEE
Confidence 66666544 3377888888875 4889996
No 217
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=60.78 E-value=22 Score=37.05 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=63.2
Q ss_pred HHHHHhhc-CCCCeEEeeccccccccchhccccccccCCCCcceEE---EEeeeh-hhhhcCCCCCccCCCCCcccccc-
Q 006673 353 DKIALKLV-GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAV---IVATIR-ALKMHGGGPQVVAGKPLDHAYLN- 426 (636)
Q Consensus 353 t~~aLkla-g~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avV---lVaTvR-ALK~HGG~~~~~~g~pL~~~l~~- 426 (636)
.++.-|.. |- ||+||-..|..+. .++|++ .||..|+..-.++ -+.+.+ +++|.- . +|-.+|+++.+
T Consensus 148 ~~L~~K~~aGA-~f~iTQ~~fd~~~-~~~~~~-~~~~~gi~~PIi~Gi~p~~s~k~~~~~~~-~----~Gv~vP~~~~~~ 219 (272)
T TIGR00676 148 ENLKRKVDAGA-DYAITQLFFDNDD-YYRFVD-RCRAAGIDVPIIPGIMPITNFKQLLRFAE-R----CGAEIPAWLVKR 219 (272)
T ss_pred HHHHHHHHcCC-CeEeeccccCHHH-HHHHHH-HHHHcCCCCCEecccCCcCCHHHHHHHHh-c----cCCCCCHHHHHH
Confidence 44555553 33 7999999999987 778888 8999988742221 134445 444542 2 23345654433
Q ss_pred -----cCHHHH-HHHHhHHHHHHHHHhhcCCc--EEEEecCC
Q 006673 427 -----ENVALV-EAGCVNLARHIANTKAYGAN--VVVAVNMF 460 (636)
Q Consensus 427 -----eNleaL-~~G~~NL~kHIeNi~~fGvP--vVVAINrF 460 (636)
++.+++ +.|++--...++.++.+|++ -+.++|++
T Consensus 220 l~~~~~~~~~~~~~gi~~~~~~~~~l~~~g~~GiHl~t~n~~ 261 (272)
T TIGR00676 220 LEKYDDDPEEVRAVGIEYATDQCEDLIAEGVPGIHFYTLNRA 261 (272)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEcCCCCH
Confidence 233333 46887778888888888877 55667765
No 218
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=60.78 E-value=5.3 Score=34.94 Aligned_cols=22 Identities=41% Similarity=0.747 Sum_probs=17.8
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|+|+| |.|.||||++-=|++.+
T Consensus 2 I~I~G----~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISG----PPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEE----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHH
Confidence 56666 47999999998888776
No 219
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.77 E-value=12 Score=41.40 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~ 103 (636)
++|+.|++.+ |-|.|||||..-|+..+..+.|.
T Consensus 135 ~~g~ii~lvG----ptGvGKTTtiakLA~~~~~~~G~ 167 (374)
T PRK14722 135 ERGGVFALMG----PTGVGKTTTTAKLAARCVMRFGA 167 (374)
T ss_pred cCCcEEEEEC----CCCCCHHHHHHHHHHHHHHhcCC
Confidence 4577888776 56999999999999876334454
No 220
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=60.59 E-value=11 Score=38.20 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=30.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.++.|+|+|- -|+||||+.-.|.+.+. .. ...++++=+|
T Consensus 126 ~~~~ili~G~----tGSGKTT~l~all~~i~-~~-~~~iv~iEd~ 164 (270)
T PF00437_consen 126 GRGNILISGP----TGSGKTTLLNALLEEIP-PE-DERIVTIEDP 164 (270)
T ss_dssp TTEEEEEEES----TTSSHHHHHHHHHHHCH-TT-TSEEEEEESS
T ss_pred cceEEEEECC----CccccchHHHHHhhhcc-cc-ccceEEeccc
Confidence 4789999995 49999999999988884 33 4567776653
No 221
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=60.38 E-value=72 Score=32.25 Aligned_cols=97 Identities=10% Similarity=0.107 Sum_probs=61.8
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCC-CCCHHHHH----HHHHHHH-HcCCCeEEEcCccccCccc-
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKAELN----AVRNAAM-AAGAFDAVVCSHHAHGGKG- 495 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~-tDT~aEI~----~v~e~c~-~~Gv~~~avs~~wa~GGeG- 495 (636)
+..++.+..++.+..|+++|+-.+.+|.+.||.- ..+. .++++.++ .+++.|+ +.|+. .++-+.+..+..=
T Consensus 71 l~s~d~~~r~~~~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~~ 149 (273)
T smart00518 71 LASPDKEKVEKSIERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALNRIIESLNEVIDETKGVV-ILLETTAGKGSQIG 149 (273)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHHHHhccCCcE-EEEeccCCCCCccC
Confidence 4567778889999999999999999999988852 1222 23345455 4455554 36775 7777765544321
Q ss_pred -hhHHHHHHHHHhhcCCCCCcccCCCCC
Q 006673 496 -AVDLGIAVQRACENVTQPLKFLYPLDV 522 (636)
Q Consensus 496 -a~eLA~aVv~a~e~~~s~fk~LY~~~~ 522 (636)
..+-...+++.++.. .++.+++|...
T Consensus 150 ~~~~~~~~ll~~v~~~-~~~g~~lD~gH 176 (273)
T smart00518 150 STFEDLKEIIDLIKEL-DRIGVCIDTCH 176 (273)
T ss_pred CCHHHHHHHHHhcCCC-CCeEEEEEccc
Confidence 234455666666431 35788887543
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=60.37 E-value=14 Score=31.66 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.++.|+++| |.|.||||+..-+.+.+
T Consensus 17 ~~~~~v~i~G----~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 17 PPPKNLLLYG----PPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4578899988 57999999998888887
No 223
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=59.53 E-value=13 Score=36.90 Aligned_cols=42 Identities=21% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE-EEEeeCC
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~-~~~lReP 112 (636)
-|.|.+++|++ |.|.||||.+..++.... +-|.++ .+.+.|+
T Consensus 22 ~~~g~~~~i~G----~~GsGKt~l~~~~~~~~~-~~g~~~~y~~~e~~ 64 (234)
T PRK06067 22 IPFPSLILIEG----DHGTGKSVLSQQFVYGAL-KQGKKVYVITTENT 64 (234)
T ss_pred CcCCcEEEEEC----CCCCChHHHHHHHHHHHH-hCCCEEEEEEcCCC
Confidence 47799999998 679999999999865441 346665 4555554
No 224
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=59.31 E-value=5.1 Score=41.54 Aligned_cols=18 Identities=50% Similarity=0.713 Sum_probs=17.0
Q ss_pred CCCCCcchhHHHHHHHHh
Q 006673 81 PLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~ 98 (636)
|+|.||||++-.|++.|+
T Consensus 12 PagsGKsTvak~lA~~Lg 29 (222)
T COG0283 12 PAGSGKSTVAKILAEKLG 29 (222)
T ss_pred CCccChHHHHHHHHHHhC
Confidence 999999999999999985
No 225
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.08 E-value=8.4 Score=33.43 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=17.4
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|+|+|+ .|.||||++--|.+-+
T Consensus 1 I~i~G~----~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGI----PGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEES----TTSSHHHHHHHHHHHH
T ss_pred CEEECC----CCCCHHHHHHHHHHHH
Confidence 566665 5999999998887765
No 226
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=58.90 E-value=8 Score=36.65 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=17.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.+|.| |-|.|||||...+...+
T Consensus 19 ~~~i~G----pPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQG----PPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-----STTSSHHHHHHHHHHHH
T ss_pred CEEEEC----CCCCChHHHHHHHHHHh
Confidence 456655 56999999999998888
No 227
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=58.86 E-value=42 Score=30.22 Aligned_cols=55 Identities=13% Similarity=-0.027 Sum_probs=33.7
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 449 fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
.++|++|+.|+..--. +...+...+++++.+.+ +..+. ++=|+|-.+|-+.+++.
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 105 ENVPMVLVGNKCDLEDERVVSREEGQALARQWGCP-FYETS--AKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCCCEEEEEECccccccceecHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHh
Confidence 5899999999975421 12233455666666764 33333 34477877777776653
No 228
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=58.37 E-value=35 Score=31.30 Aligned_cols=65 Identities=22% Similarity=0.240 Sum_probs=39.8
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHH----HHHHHHHcC--------------CCeEEEcCccccCccchhHHHH
Q 006673 440 ARHIANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAAG--------------AFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~----v~e~c~~~G--------------v~~~avs~~wa~GGeGa~eLA~ 501 (636)
..+++.+++.+.|+++++|+...-++++++. +++..+..+ .+ +..+. ++-|+|-.+|-+
T Consensus 104 ~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~S--a~~g~gi~~l~~ 180 (189)
T cd00881 104 REHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVP-IVPGS--ALTGIGVEELLE 180 (189)
T ss_pred HHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcce-EEEEe--cccCcCHHHHHH
Confidence 3445566668999999999976655555443 444443322 32 33222 566778777777
Q ss_pred HHHHHh
Q 006673 502 AVQRAC 507 (636)
Q Consensus 502 aVv~a~ 507 (636)
.+.+.+
T Consensus 181 ~l~~~l 186 (189)
T cd00881 181 AIVEHL 186 (189)
T ss_pred HHHhhC
Confidence 776655
No 229
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=57.86 E-value=8.6 Score=36.88 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=33.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
+|+|+++| |.|.||||+.--|.+.+..+++.-..-+-|.|-.|
T Consensus 2 ~r~ivl~G----psg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~ 44 (183)
T PF00625_consen 2 RRPIVLVG----PSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPG 44 (183)
T ss_dssp SSEEEEES----STTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTT
T ss_pred CCEEEEEC----CCCCCHHHHHHHHHHhcccccccceeecccCCccc
Confidence 56677765 78999999999999998656777777788998665
No 230
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=57.61 E-value=9.8 Score=40.64 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=22.6
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
|.||| +.|.||||++-.|.+.|. +.|.+
T Consensus 2 IgItG----~SGSGKTTv~~~l~~~l~-~~g~~ 29 (277)
T cd02029 2 IAVTG----SSGAGTTTVKRAFEHIFA-REGIH 29 (277)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 55666 579999999999999994 66754
No 231
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=57.40 E-value=32 Score=35.78 Aligned_cols=98 Identities=19% Similarity=0.117 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCccc
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 517 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~L 517 (636)
....|++..-+.|+|+|+.-=- =|++|.+.+.+.|++.|+. +.++-.|+-|=.=...|++...+.+ .-
T Consensus 80 ~~~~~~~~al~~g~~vVigttg---~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l--------~~ 147 (266)
T TIGR00036 80 GVLNHLKFALEHGVRLVVGTTG---FSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYL--------GD 147 (266)
T ss_pred HHHHHHHHHHHCCCCEEEECCC---CCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhc--------cC
Confidence 3556778888899999996533 3789999999999999997 8888888876443333443333322 11
Q ss_pred CCCCCCHHHHHHHHHHHhCCCceee-CHHHHHHHHHHHhC
Q 006673 518 YPLDVSIKEKIDTIARSYGASGVEY-SEEAEKQIEMYTGQ 556 (636)
Q Consensus 518 Y~~~~~L~eKIetIA~IYGA~~V~~-S~~A~kqLk~ie~l 556 (636)
|| ..|. .+-....++. |-.|.+-.+.+.+.
T Consensus 148 ~d--ieI~-------E~HH~~K~DaPSGTA~~l~~~i~~~ 178 (266)
T TIGR00036 148 YD--IEII-------ELHHRHKKDAPSGTALKTAEMIAEA 178 (266)
T ss_pred CC--EEee-------eeccCCCCCCCCHHHHHHHHHHHHh
Confidence 32 1222 2445556666 77777766666654
No 232
>COG2229 Predicted GTPase [General function prediction only]
Probab=57.39 E-value=31 Score=35.12 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=22.9
Q ss_pred CcEEEEecCC---CCCCHHHHHHHHHHHHHcCCC
Q 006673 451 ANVVVAVNMF---ATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 451 vPvVVAINrF---~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
+|+|||+|+| ...+.++|..+.+.|. +.++
T Consensus 122 ip~vVa~NK~DL~~a~ppe~i~e~l~~~~-~~~~ 154 (187)
T COG2229 122 IPVVVAINKQDLFDALPPEKIREALKLEL-LSVP 154 (187)
T ss_pred CCEEEEeeccccCCCCCHHHHHHHHHhcc-CCCc
Confidence 9999999984 5677788877777764 4555
No 233
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=57.20 E-value=2.4e+02 Score=29.25 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=54.3
Q ss_pred HHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE---cCccccCcc---chhHHHHHHHHHhhcCCCC
Q 006673 441 RHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV---CSHHAHGGK---GAVDLGIAVQRACENVTQP 513 (636)
Q Consensus 441 kHIeNi~~-fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~av---s~~wa~GGe---Ga~eLA~aVv~a~e~~~s~ 513 (636)
+++...++ .+.|++|-|+-. +.+++....+.+++.|+.-+.+ |-+...+|+ +..++..++++.+.+. .+
T Consensus 79 ~~~~~~~~~~~~p~ivsi~g~---~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~ 154 (296)
T cd04740 79 EELLPWLREFGTPVIASIAGS---TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TD 154 (296)
T ss_pred HHHHHHhhcCCCcEEEEEecC---CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cC
Confidence 34444433 789999988743 4678777788888888863333 233333222 3456777788777542 12
Q ss_pred CcccCCCCCCHHHHHHHHHH---HhCCCceeeC
Q 006673 514 LKFLYPLDVSIKEKIDTIAR---SYGASGVEYS 543 (636)
Q Consensus 514 fk~LY~~~~~L~eKIetIA~---IYGA~~V~~S 543 (636)
+-........+. .+..+|+ -.|+|.|.++
T Consensus 155 ~Pv~vKl~~~~~-~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 155 VPVIVKLTPNVT-DIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CCEEEEeCCCch-hHHHHHHHHHHcCCCEEEEE
Confidence 211111111122 2455555 4788888763
No 234
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=57.20 E-value=8.6 Score=35.22 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=29.7
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeC-CCCCCccccccC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ-PSQGPTFGIKGG 123 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRe-PSlGP~FGiKGG 123 (636)
+-|.||||++.-|++.| .+.|++..+.=-. ||+-.-|+.+.+
T Consensus 7 kgG~GKTt~a~~la~~l-~~~g~~V~~id~D~~~~~~~~~~~~~ 49 (116)
T cd02034 7 KGGVGKTTIAALLARYL-AEKGKPVLAIDADPDDLPERLSVEVG 49 (116)
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCcEEEEECCchhhHHHHhhccC
Confidence 47999999999999999 5778876543333 455444555543
No 235
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=56.90 E-value=38 Score=36.76 Aligned_cols=52 Identities=25% Similarity=0.257 Sum_probs=42.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
.+..|.|.||+ .-|+||||++.-|+.+| ++.|+++.+. +|.||+.-.||++.
T Consensus 28 ~~~~~ii~v~g----kgG~GKSt~a~nLa~~l-a~~g~rVllid~D~~~~~~~~~~g~~~ 82 (329)
T cd02033 28 TKKTQIIAIYG----KGGIGKSFTLANLSYMM-AQQGKRVLLIGCDPKSDTTSLLFGGKA 82 (329)
T ss_pred CCCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCcEEEEEeeecccccchhccccC
Confidence 35688899984 68999999999999999 5889998765 78888888887643
No 236
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.68 E-value=12 Score=38.32 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=30.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.|+.||||+ +=+|-|| ++.++| +.-|-+.++.-|.|
T Consensus 6 aG~~vlvTg---agaGIG~-----~~v~~L-a~aGA~ViAvaR~~ 41 (245)
T KOG1207|consen 6 AGVIVLVTG---AGAGIGK-----EIVLSL-AKAGAQVIAVARNE 41 (245)
T ss_pred cceEEEeec---ccccccH-----HHHHHH-HhcCCEEEEEecCH
Confidence 599999999 6677776 677999 68999999998863
No 237
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=56.57 E-value=13 Score=36.16 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=26.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
..++.|+++| |.|.||||++..+...+. ..|.+
T Consensus 36 ~~~~~lll~G----~~G~GKT~la~~~~~~~~-~~~~~ 68 (226)
T TIGR03420 36 KGDRFLYLWG----ESGSGKSHLLQAACAAAE-ERGKS 68 (226)
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc
Confidence 4577899998 679999999999998874 44544
No 238
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=56.53 E-value=58 Score=30.20 Aligned_cols=57 Identities=7% Similarity=-0.042 Sum_probs=36.1
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccc-cCccchhHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHA-HGGKGAVDLGIAVQRA 506 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa-~GGeGa~eLA~aVv~a 506 (636)
-++|+|++.|+..-....+ .+...++++..+.. +..+.... .++++-.++-..+++.
T Consensus 108 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~e~Sa~~~~~~~~i~~~f~~l~~~ 167 (170)
T cd04115 108 NEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMP-LFETSAKDPSENDHVEAIFMTLAHK 167 (170)
T ss_pred CCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCc-EEEEeccCCcCCCCHHHHHHHHHHH
Confidence 4699999999987543332 23455666666665 55555554 4577777766666544
No 239
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=56.42 E-value=87 Score=31.82 Aligned_cols=90 Identities=9% Similarity=0.042 Sum_probs=54.6
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCC---C-CCH-------HHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA---T-DSK-------AELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~---t-DT~-------aEI~~v~e~c~~~Gv~~~avs~~wa~GGe 494 (636)
.+|.+.-++.+..+++.|+..+.+|.|.|+. .-+. . +.+ +.+..+.+.+++.|+. +++-++... --
T Consensus 88 ~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i~iE~~~~~-~~ 164 (283)
T PRK13209 88 SEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-AGYDVYYEQANNETRRRFIDGLKESVELASRASVT-LAFEIMDTP-FM 164 (283)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-CCccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeecCCc-cc
Confidence 4566677888999999999999999998874 3222 1 112 2245556667788996 777665321 11
Q ss_pred chhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 495 GAVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 495 Ga~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
...+=+..+++.+. ...++..||.
T Consensus 165 ~~~~~~~~ll~~v~--~~~lgl~~D~ 188 (283)
T PRK13209 165 NSISKALGYAHYLN--SPWFQLYPDI 188 (283)
T ss_pred CCHHHHHHHHHHhC--CCccceEecc
Confidence 12222333444442 2358888774
No 240
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=56.31 E-value=54 Score=29.36 Aligned_cols=68 Identities=15% Similarity=0.071 Sum_probs=44.4
Q ss_pred HHHHHHHHHh-hcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTK-AYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~-~fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++..++..++ .+++|+||++|+..... ..+.+..++.+.+.+++ ++.+. +.=|+|-.+|-+.+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 92 EFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVP-YVETS--AKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEee--CCCCCCHHHHHHHHHHHHH
Confidence 3444444443 37899999999987644 23455667778877875 43332 3556888888877766543
No 241
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=56.23 E-value=89 Score=34.83 Aligned_cols=113 Identities=16% Similarity=0.158 Sum_probs=65.5
Q ss_pred cCHHHH-HHHHhHHHHHHHHHh-hc-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc--cccCcc--c----
Q 006673 427 ENVALV-EAGCVNLARHIANTK-AY-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH--HAHGGK--G---- 495 (636)
Q Consensus 427 eNleaL-~~G~~NL~kHIeNi~-~f-GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~--wa~GGe--G---- 495 (636)
+|.+.+ +.|+.....|+..++ +| .+|+|+-|- ...+.+|+..+.+.+++.|+.-+.++=. ...+.. |
T Consensus 87 ~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~--~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g 164 (385)
T PLN02495 87 QNIELISDRPFETMLAEFKQLKEEYPDRILIASIM--EEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG 164 (385)
T ss_pred cCcccccccCHHHHHHHHHHHHhhCCCCcEEEEcc--CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc
Confidence 454422 456777777888886 47 579999872 2346788988888899999863333221 222111 1
Q ss_pred -hhHHHHHHHHHhhcC---CCCCcccCCCCCCHHHHHHHHHH---HhCCCceeeCHHH
Q 006673 496 -AVDLGIAVQRACENV---TQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYSEEA 546 (636)
Q Consensus 496 -a~eLA~aVv~a~e~~---~s~fk~LY~~~~~L~eKIetIA~---IYGA~~V~~S~~A 546 (636)
-.|+.++|++.+.+. |--.|...+.+ + |..+|+ -.||++|......
T Consensus 165 q~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t----~-i~~ia~aa~~~Gadgi~liNT~ 217 (385)
T PLN02495 165 QDCDLLEEVCGWINAKATVPVWAKMTPNIT----D-ITQPARVALKSGCEGVAAINTI 217 (385)
T ss_pred cCHHHHHHHHHHHHHhhcCceEEEeCCChh----h-HHHHHHHHHHhCCCEEEEeccc
Confidence 235666666666431 11123332222 1 556666 5789999876543
No 242
>PRK06547 hypothetical protein; Provisional
Probab=56.18 E-value=8.6 Score=37.48 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
-.+|+|++ |.|.||||++--|++.+
T Consensus 15 ~~~i~i~G----~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 15 MITVLIDG----RSGSGKTTLAGALAART 39 (172)
T ss_pred CEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 45788877 67999999998888775
No 243
>PRK06762 hypothetical protein; Provisional
Probab=56.07 E-value=9.5 Score=35.60 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=20.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.++|++||. .|.||||.+--|.+.+
T Consensus 2 ~~li~i~G~----~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGN----SGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 468888885 6999999998888777
No 244
>PRK14738 gmk guanylate kinase; Provisional
Probab=55.95 E-value=13 Score=36.87 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=20.6
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHHHHH
Q 006673 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLC 94 (636)
Q Consensus 65 ~~~~gklilVTaitPTP~GEGKtTttIGL~ 94 (636)
+.+++++|+++| |.|.||||+.-.|.
T Consensus 9 ~~~~~~~ivi~G----psG~GK~tl~~~L~ 34 (206)
T PRK14738 9 KPAKPLLVVISG----PSGVGKDAVLARMR 34 (206)
T ss_pred CCCCCeEEEEEC----cCCCCHHHHHHHHH
Confidence 346799999998 67999999775553
No 245
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=55.44 E-value=57 Score=31.73 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHH-------------HHHHHHHHHH----cCC--CeEEEcCccccCccchhHHHH
Q 006673 441 RHIANTKAYGANVVVAVNMFATDSKAE-------------LNAVRNAAMA----AGA--FDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tDT~aE-------------I~~v~e~c~~----~Gv--~~~avs~~wa~GGeGa~eLA~ 501 (636)
+.++.++++|.|+++++|+-..+...| ++.+++.|.+ .|+ ..+.+...+..||-+-..|-+
T Consensus 98 ~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~ 177 (197)
T cd04104 98 KLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRE 177 (197)
T ss_pred HHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHH
Confidence 446667778999999999988765322 6677777763 222 234555556567788888888
Q ss_pred HHHHHhh
Q 006673 502 AVQRACE 508 (636)
Q Consensus 502 aVv~a~e 508 (636)
.++..+.
T Consensus 178 ~~~~~l~ 184 (197)
T cd04104 178 TLLKDLP 184 (197)
T ss_pred HHHHHhh
Confidence 8888775
No 246
>PRK00098 GTPase RsgA; Reviewed
Probab=55.43 E-value=74 Score=33.54 Aligned_cols=60 Identities=22% Similarity=0.225 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCC-CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 006673 439 LARHIANTKAYGANVVVAVNMFAT-DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~t-DT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~ 501 (636)
+.+-+..++..++|+|+++|+-.- +..++++...+.+++.|.. +...+. +=|+|-.+|.+
T Consensus 100 idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~-v~~vSA--~~g~gi~~L~~ 160 (298)
T PRK00098 100 LDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYD-VLELSA--KEGEGLDELKP 160 (298)
T ss_pred HHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCe-EEEEeC--CCCccHHHHHh
Confidence 456666677789999999999775 3455666666777778875 333222 33555544443
No 247
>PRK06761 hypothetical protein; Provisional
Probab=55.41 E-value=12 Score=39.74 Aligned_cols=39 Identities=26% Similarity=0.231 Sum_probs=30.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+++|+|++. .|.||||++--|.+-|. ..|.++.. .++|.
T Consensus 3 ~~lIvI~G~----~GsGKTTla~~L~~~L~-~~g~~v~~-~~~~~ 41 (282)
T PRK06761 3 TKLIIIEGL----PGFGKSTTAKMLNDILS-QNGIEVEL-YLEGN 41 (282)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHhcC-cCceEEEE-EecCC
Confidence 579999996 49999999999999994 56776544 55544
No 248
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=55.38 E-value=52 Score=31.52 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=23.6
Q ss_pred HHHHHhhcCCcEEEEecCCCCC---CHHHHHHHHHHHH
Q 006673 442 HIANTKAYGANVVVAVNMFATD---SKAELNAVRNAAM 476 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tD---T~aEI~~v~e~c~ 476 (636)
++..+...++|+|+++|+-.-. .++.++.+++++.
T Consensus 109 ~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 146 (194)
T cd01891 109 VLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFI 146 (194)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence 3444556799999999998752 2344666777664
No 249
>PRK13975 thymidylate kinase; Provisional
Probab=55.36 E-value=9.8 Score=36.30 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=22.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
|++|.+.|+ -|.||||.+--|++.|+
T Consensus 2 ~~~I~ieG~----~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGI----DGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 578999986 69999999999999884
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=55.29 E-value=23 Score=41.56 Aligned_cols=129 Identities=22% Similarity=0.288 Sum_probs=84.3
Q ss_pred ccccCCchHHHHHHHHhhcCCCCeEEeeccc----------cccccchh--cccc-------ccccCCCC-cceEEEEee
Q 006673 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGF----------GADIGAEK--FMNI-------KCRYSGLT-PQCAVIVAT 401 (636)
Q Consensus 342 NIAhG~nSviAt~~aLklag~~dyvVTEAGF----------GaDlGaEK--F~dI-------kcr~~gl~-P~avVlVaT 401 (636)
..-||--|++- +|+-+ ..+-+|+|= ..+=| ++ |+|- +.|.-|-+ -|-||||..
T Consensus 161 HVDHGKTTLLD---~lRks---~VAA~E~GGITQhIGAF~V~~p~G-~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVA 233 (683)
T KOG1145|consen 161 HVDHGKTTLLD---ALRKS---SVAAGEAGGITQHIGAFTVTLPSG-KSITFLDTPGHAAFSAMRARGANVTDIVVLVVA 233 (683)
T ss_pred cccCChhhHHH---HHhhC---ceehhhcCCccceeceEEEecCCC-CEEEEecCCcHHHHHHHHhccCccccEEEEEEE
Confidence 47899888772 45555 556666651 12223 44 6664 67887877 788888873
Q ss_pred ehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHH-------
Q 006673 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA------- 474 (636)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~------- 474 (636)
.- -|+ ...-+|+ |...|.-++|+|||||+-..- ++-++.+.+.
T Consensus 234 ad-----DGV-------------mpQT~Ea-----------IkhAk~A~VpiVvAinKiDkp-~a~pekv~~eL~~~gi~ 283 (683)
T KOG1145|consen 234 AD-----DGV-------------MPQTLEA-----------IKHAKSANVPIVVAINKIDKP-GANPEKVKRELLSQGIV 283 (683)
T ss_pred cc-----CCc-------------cHhHHHH-----------HHHHHhcCCCEEEEEeccCCC-CCCHHHHHHHHHHcCcc
Confidence 21 122 1122233 556677899999999997643 4455555444
Q ss_pred HHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 475 AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 475 c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
|++.|.. +-+-..=+.=|++--+|+++++-.++
T Consensus 284 ~E~~GGd-VQvipiSAl~g~nl~~L~eaill~Ae 316 (683)
T KOG1145|consen 284 VEDLGGD-VQVIPISALTGENLDLLEEAILLLAE 316 (683)
T ss_pred HHHcCCc-eeEEEeecccCCChHHHHHHHHHHHH
Confidence 4556663 66667778899999999999998775
No 251
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=55.29 E-value=42 Score=30.58 Aligned_cols=56 Identities=13% Similarity=0.032 Sum_probs=36.9
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++|++|+.|+..-..+. +.+...++|++.+.. +..+. ++=|+|-.++-+.+++.+
T Consensus 105 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 105 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCA-FLETS--AKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHHHHHh
Confidence 679999999997653221 223345677777775 44443 345788888888877654
No 252
>PRK04040 adenylate kinase; Provisional
Probab=55.20 E-value=10 Score=37.37 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.++|+|||+ .|.||||++--|.+.|
T Consensus 2 ~~~i~v~G~----pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGV----PGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeC----CCCCHHHHHHHHHHHh
Confidence 468999997 5999999999998888
No 253
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=55.12 E-value=1.3e+02 Score=28.16 Aligned_cols=112 Identities=16% Similarity=0.109 Sum_probs=57.8
Q ss_pred CCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEc--CccccCc---cchhHHHHHHHHHhhcCCCC-CcccCCCC
Q 006673 450 GANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVC--SHHAHGG---KGAVDLGIAVQRACENVTQP-LKFLYPLD 521 (636)
Q Consensus 450 GvPvVVAINrF~tD--T~aEI~~v~e~c~~~Gv~~~avs--~~wa~GG---eGa~eLA~aVv~a~e~~~s~-fk~LY~~~ 521 (636)
.+|++|-++....+ |++-++.+ +.|+++|+. ++.. ..+..-. ++..+.-++|.+.+ ..+-+ +=+.|+..
T Consensus 48 ~~~v~~~v~~~~~~~~~~~~~~~a-~~a~~~Gad-~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~ 124 (201)
T cd00945 48 DVPVIVVVGFPTGLTTTEVKVAEV-EEAIDLGAD-EIDVVINIGSLKEGDWEEVLEEIAAVVEAA-DGGLPLKVILETRG 124 (201)
T ss_pred CCeEEEEecCCCCCCcHHHHHHHH-HHHHHcCCC-EEEEeccHHHHhCCCHHHHHHHHHHHHHHh-cCCceEEEEEECCC
Confidence 59999999987643 44444444 556778997 4443 2332221 44555555666654 11111 11222322
Q ss_pred C-CH--HHHHHHHHHHhCCCceeeCHH------HHHHHHHHHhCCCCCCCee
Q 006673 522 V-SI--KEKIDTIARSYGASGVEYSEE------AEKQIEMYTGQGFSGLPIC 564 (636)
Q Consensus 522 ~-~L--~eKIetIA~IYGA~~V~~S~~------A~kqLk~ie~lG~~~LPVC 564 (636)
. +. -.++-.++...|++.|..+.. -..+++++.+.-=.++||.
T Consensus 125 ~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~ 176 (201)
T cd00945 125 LKTADEIAKAARIAAEAGADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVK 176 (201)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEE
Confidence 2 32 222223344579999988765 3455666654311144554
No 254
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=54.91 E-value=52 Score=29.35 Aligned_cols=59 Identities=27% Similarity=0.299 Sum_probs=36.1
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+.++++|+|+++|+...-.++++. .+.+++...+.. +.... +.-|+|-.+|-+.+.+++
T Consensus 97 ~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~iS--a~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 97 LLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP-VVPTS--ARKGEGIDELKDAIAELA 156 (158)
T ss_pred HHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCC-eEEEE--ccCCCCHHHHHHHHHHHh
Confidence 345799999999998763333222 234555566775 43333 344667777777766654
No 255
>PRK15447 putative protease; Provisional
Probab=54.87 E-value=33 Score=36.39 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccC
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY 518 (636)
|..=|+-+++.|..|+|++|+.... ++|++.+.++++. ++. .++. +--|.+.++++. .+....
T Consensus 50 l~e~v~~~~~~gkkvyva~p~i~~~-~~e~~~l~~~l~~-~~~-~v~v-----~d~g~l~~~~e~---------~~~l~~ 112 (301)
T PRK15447 50 WLELAERLAAAGKEVVLSTLALVEA-PSELKELRRLVEN-GEF-LVEA-----NDLGAVRLLAER---------GLPFVA 112 (301)
T ss_pred HHHHHHHHHHcCCEEEEEecccccC-HHHHHHHHHHHhc-CCC-EEEE-----eCHHHHHHHHhc---------CCCEEE
Confidence 4455667788999999999996421 3588888887764 554 3332 223555555541 122222
Q ss_pred CCCCCHHH--HHHHHHHHhCCCceeeCHHHH-HHHHHHHh--------------CCCCCCCeeEee
Q 006673 519 PLDVSIKE--KIDTIARSYGASGVEYSEEAE-KQIEMYTG--------------QGFSGLPICMAK 567 (636)
Q Consensus 519 ~~~~~L~e--KIetIA~IYGA~~V~~S~~A~-kqLk~ie~--------------lG~~~LPVCmAK 567 (636)
+..+.+-. =++... =+|++.|+.|.+-- +||+.+.+ .-||++|+++..
T Consensus 113 d~~lni~N~~a~~~l~-~~G~~rv~ls~ELsl~eI~~i~~~~~~~~~~~~~~Ev~VhG~lp~m~S~ 177 (301)
T PRK15447 113 GPALNCYNAATLALLA-RLGATRWCMPVELSRDWLANLLAQCPELGRNQFEVEVFAYGRLPLAYSA 177 (301)
T ss_pred ecccccCCHHHHHHHH-HcCCcEEEECCcCCHHHHHHHHHhcccccCCCcceEEEEEchhHHHhhc
Confidence 22232222 222222 57999999998754 77777743 247788865443
No 256
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=54.80 E-value=72 Score=28.87 Aligned_cols=56 Identities=14% Similarity=0.013 Sum_probs=36.8
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++|+|++.|+..-..+. +.+.+.+++++.++. +..+. ++-|+|-.+|=+.+++.+
T Consensus 104 ~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 104 DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCP-FLETS--AKERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCEEEEEECccccccceEcHHHHHHHHHHcCCE-EEEee--cCCCCCHHHHHHHHHHHH
Confidence 589999999998653222 234456677777765 33332 345888888877777655
No 257
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=54.56 E-value=53 Score=29.19 Aligned_cols=66 Identities=12% Similarity=0.004 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhh-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 437 VNLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 437 ~NL~kHIeNi~~-fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++...+.+... .++|++|++|+....... -.+.+.+++++.+..-+.+| ++-|+|-.+|-+.+++
T Consensus 90 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S---~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 90 KGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETS---AKDNINIDEVFKLLVR 158 (160)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEec---cCCCCCHHHHHHHHHh
Confidence 345555555544 689999999998765322 22456666676776523333 3456777777766654
No 258
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=54.38 E-value=14 Score=42.52 Aligned_cols=47 Identities=32% Similarity=0.533 Sum_probs=34.1
Q ss_pred chhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 58 SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 58 ~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.+.+|+.++..| |||.+ |-|.||||.+.+|+.=+ +..|| .+=++-.|
T Consensus 254 kl~eRL~eraeG--ILIAG----~PGaGKsTFaqAlAefy-~~~Gk-iVKTmEsP 300 (604)
T COG1855 254 KLKERLEERAEG--ILIAG----APGAGKSTFAQALAEFY-ASQGK-IVKTMESP 300 (604)
T ss_pred HHHHHHHhhhcc--eEEec----CCCCChhHHHHHHHHHH-HhcCc-EEeeccCc
Confidence 355677665555 77765 67999999999999999 57888 44444433
No 259
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=54.25 E-value=59 Score=29.97 Aligned_cols=56 Identities=7% Similarity=-0.067 Sum_probs=35.6
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
-++|++|+.|+..-..+. ..+..+++++..+..-+.+|-.+ |+|-.++-+.+++.+
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~v~~~~~~i~~~~ 164 (167)
T cd01867 107 EDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKA---NINVEEAFFTLAKDI 164 (167)
T ss_pred CCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC---CCCHHHHHHHHHHHH
Confidence 479999999997653221 33445667777777534444433 577777777777655
No 260
>PRK13946 shikimate kinase; Provisional
Probab=54.09 E-value=9.2 Score=36.95 Aligned_cols=26 Identities=42% Similarity=0.566 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.+.|+|+++ .|.||||++.-|++.|+
T Consensus 10 ~~~I~l~G~----~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGL----MGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHcC
Confidence 457999998 49999999999988874
No 261
>PTZ00369 Ras-like protein; Provisional
Probab=54.00 E-value=65 Score=30.71 Aligned_cols=56 Identities=14% Similarity=0.012 Sum_probs=35.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
-++|+|++.|+..-..+ -+.+...+++++.+.+ +..+. ++-|+|-.++-+.+++.+
T Consensus 109 ~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~-~~e~S--ak~~~gi~~~~~~l~~~l 166 (189)
T PTZ00369 109 DRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIP-FLETS--AKQRVNVDEAFYELVREI 166 (189)
T ss_pred CCCCEEEEEECcccccccccCHHHHHHHHHHhCCE-EEEee--CCCCCCHHHHHHHHHHHH
Confidence 48999999999764211 1233456667777775 44333 566788888666665554
No 262
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=53.97 E-value=19 Score=35.45 Aligned_cols=40 Identities=25% Similarity=0.285 Sum_probs=28.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE-EEEeeC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQ 111 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~-~~~lRe 111 (636)
|.|.+++|++ |-|.|||+.+..++-.. .+-|+++ .+++.+
T Consensus 14 ~~g~~~li~G----~~G~GKt~~~~~~~~~~-~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 14 PEGHVIVVIG----EYGTGKTTFSLQFLYQG-LKNGEKAMYISLEE 54 (224)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEEEEECCC
Confidence 6799999999 57999999988876433 1336665 445544
No 263
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=53.87 E-value=12 Score=36.60 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=21.3
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 80 TPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
|+-|-||||.++|++.... ..|+++..
T Consensus 9 ~g~G~Gkt~~a~g~~~ra~-~~g~~v~~ 35 (159)
T cd00561 9 TGNGKGKTTAALGLALRAL-GHGYRVGV 35 (159)
T ss_pred CCCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 4459999999999987773 56888654
No 264
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=53.76 E-value=12 Score=37.12 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=27.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+|-+.+.|+ -|-||||.++||+... ...|+++.+.
T Consensus 4 ~~Gli~v~~g-----~GkGKtt~a~g~a~ra-~~~g~~v~iv 39 (173)
T TIGR00708 4 ERGIIIVHTG-----NGKGKTTAAFGMALRA-LGHGKKVGVI 39 (173)
T ss_pred cccEEEEECC-----CCCChHHHHHHHHHHH-HHCCCeEEEE
Confidence 3477777765 6999999999998777 4678887543
No 265
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=53.59 E-value=29 Score=32.74 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=34.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGG 123 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGG 123 (636)
.|.|.+ |.+.||||+.--|..-| .+.|.+..+...-.--.+.|..-|-
T Consensus 2 vv~VvG----~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~g~~~~d~pG~ 49 (140)
T PF03205_consen 2 VVQVVG----PKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDHGQFEIDPPGT 49 (140)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHH-HHTT--EEEEEE-STTSTTCSTTCH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHH-hHcCCceEEEEEccCCCcccCCCCc
Confidence 567777 46999999999999999 4789998877776554556666665
No 266
>PRK12289 GTPase RsgA; Reviewed
Probab=53.46 E-value=46 Score=36.42 Aligned_cols=62 Identities=19% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHH
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aV 503 (636)
|.+.+..+...|+|+|+++|+-.-.+++|++...+..+..|.. +...+ +.-|+|-.+|.+.+
T Consensus 109 LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~-v~~iS--A~tg~GI~eL~~~L 170 (352)
T PRK12289 109 LSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQ-PLFIS--VETGIGLEALLEQL 170 (352)
T ss_pred HHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCe-EEEEE--cCCCCCHHHHhhhh
Confidence 4455555567899999999998876777776666666778885 43332 44456655555443
No 267
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=53.25 E-value=52 Score=29.92 Aligned_cols=54 Identities=26% Similarity=0.259 Sum_probs=35.0
Q ss_pred cCCcEEEEecCCCCCCHHHHHHH--HHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKAELNAV--RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v--~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.+.|+||++|+..-.+.+++... ...+...+.. +..+ =++-|+|-.+|.+.+..
T Consensus 119 ~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 119 TAKPVIYVLNKIDLDDAEELEEELVRELALEEGAE-VVPI--SAKTEEGLDELIRAIYE 174 (176)
T ss_pred hhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCC-EEEE--ehhhhcCHHHHHHHHHh
Confidence 58999999999887766666554 3333334443 3333 35677888787776654
No 268
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=53.18 E-value=9.5 Score=42.55 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
-||-||+++ |-|.|||.+++|++|.|+
T Consensus 49 aGr~iLiaG----ppGtGKTAlA~~ia~eLG 75 (398)
T PF06068_consen 49 AGRAILIAG----PPGTGKTALAMAIAKELG 75 (398)
T ss_dssp TT-EEEEEE-----TTSSHHHHHHHHHHHCT
T ss_pred cCcEEEEeC----CCCCCchHHHHHHHHHhC
Confidence 499999998 679999999999999984
No 269
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=53.12 E-value=49 Score=29.30 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.+-++++++|+|+++|+......++. .+...+.+...+. .+=++-|+|-.+|-+.+++
T Consensus 98 ~~~~~~~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~--~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 98 AKYLRKSKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPI--PISAEHGRGIGDLLDAILE 155 (157)
T ss_pred HHHHHhcCCCEEEEEECcccCChHHH---HHHHHhcCCCCeE--EEecccCCCHHHHHHHHHh
Confidence 33455678999999999876554443 3334456663232 3334556777777766654
No 270
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=53.10 E-value=1.7e+02 Score=27.09 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=50.0
Q ss_pred chHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCccccccc
Q 006673 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (636)
Q Consensus 348 nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~e 427 (636)
...+...++.+..+ .++-|.-.|++-+.=.+---.+.......+||.|+|-. |......+.+ ...
T Consensus 18 ~~~~~~~l~~~~~~-~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~~d~v~l~~---------G~ND~~~~~~-----~~~ 82 (191)
T cd01834 18 VGYVETYLAARYPE-LKLTFRNLGWSGDTVSDLAARRDRDVLPAKPDVVSIMF---------GINDSFRGFD-----DPV 82 (191)
T ss_pred HHHHHHHHHHhCCC-CCcEEEEcccCccchhhhhhhhhcccccCCCCEEEEEe---------ecchHhhccc-----ccc
Confidence 45566666666521 25777778877665332211344445557799887744 3221100000 123
Q ss_pred CHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCC
Q 006673 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT 462 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t 462 (636)
+++..+..+..+.+.+.. +.-+.++| .++-++.
T Consensus 83 ~~~~~~~~l~~~v~~~~~-~~~~~~ii-~~~p~~~ 115 (191)
T cd01834 83 GLEKFKTNLRRLIDRLKN-KESAPRIV-LVSPIAY 115 (191)
T ss_pred cHHHHHHHHHHHHHHHHc-ccCCCcEE-EECCccc
Confidence 566777666665544431 23455544 4665543
No 271
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.09 E-value=15 Score=40.22 Aligned_cols=31 Identities=16% Similarity=0.074 Sum_probs=26.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
+.+.|-||+.+ ||||||-=|++.| ...|+++
T Consensus 109 ~~~~I~ITGT~------GKTTTt~li~~iL-~~~g~~~ 139 (445)
T PRK04308 109 GDKVIAITGSN------GKTTVTSLVGYLC-IKCGLDT 139 (445)
T ss_pred CCCEEEEECCC------cHHHHHHHHHHHH-HHcCCCe
Confidence 46899999985 9999999999999 4677764
No 272
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=53.08 E-value=41 Score=30.23 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=38.4
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++|+||++|+-.-.. +...+.+++++++.|+. +. ++=++-|+|-.+|-+.+++.+
T Consensus 104 ~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 104 PNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLP-FF--ETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred CCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCe-EE--EEeCCCCCCHHHHHHHHHHHH
Confidence 4799999999865433 22356677888888875 33 333456778888777776654
No 273
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=53.03 E-value=38 Score=40.98 Aligned_cols=64 Identities=23% Similarity=0.283 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHH-------HHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNA-------AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~-------c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
..|+..++.+++|+||++|+..-.. +..+.+.+. +++.|-. +-+..+=+.=|+|-.+|-+.++.
T Consensus 379 ~e~i~~a~~~~vPiIVviNKiDl~~-a~~e~V~~eL~~~~~~~e~~g~~-vp~vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 379 IEAINHAKAAGVPIIVAINKIDKPG-ANPDRVKQELSEYGLVPEEWGGD-TIFVPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred HHHHHHHHhcCCcEEEEEECccccc-cCHHHHHHHHHHhcccHHHhCCC-ceEEEEeCCCCCCchHHHHhhhh
Confidence 3466777889999999999987532 122223322 2233311 11222334557777777766654
No 274
>PRK14527 adenylate kinase; Provisional
Probab=52.98 E-value=12 Score=36.10 Aligned_cols=28 Identities=39% Similarity=0.563 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+++++|+|.+ |-|.||||.+--|++-++
T Consensus 4 ~~~~~i~i~G----~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 4 TKNKVVIFLG----PPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 4688999998 479999999999987773
No 275
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=52.87 E-value=15 Score=40.19 Aligned_cols=31 Identities=26% Similarity=0.103 Sum_probs=27.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.|.|-||+.+ ||||||-=|++.| .+.|+++.
T Consensus 108 ~~~I~VTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (438)
T PRK04663 108 KPVIAITGSN------GKSTVTDLTGVMA-KAAGVKVA 138 (438)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HHCCCCEE
Confidence 5799999986 9999999999999 57888754
No 276
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=52.84 E-value=21 Score=38.95 Aligned_cols=55 Identities=29% Similarity=0.343 Sum_probs=37.3
Q ss_pred ccchhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 56 LLSVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 56 ~~~~~~~~~-~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
+.++|.++. ...+.-.| +||-+| |.||||+.=.|++-| .+-|+++.+--=.||--
T Consensus 37 a~~ll~~l~p~tG~a~vi---GITG~P-GaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 37 ARELLRALYPRTGNAHVI---GITGVP-GAGKSTLIEALGREL-RERGHRVAVLAVDPSSP 92 (323)
T ss_pred HHHHHHHHhhcCCCCcEE---EecCCC-CCchHHHHHHHHHHH-HHCCcEEEEEEECCCCC
Confidence 344555442 22233344 555555 999999999999999 58899877666677765
No 277
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=52.67 E-value=99 Score=26.51 Aligned_cols=61 Identities=18% Similarity=0.189 Sum_probs=36.3
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHH-----HHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRN-----AAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e-----~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.+....+.+.|+||++|+...-++.++....+ .....+.+ +...+ ++=|+|-.+|-+.+.+
T Consensus 96 ~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s--a~~~~~v~~l~~~l~~ 161 (163)
T cd00880 96 LLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLP-VIAVS--ALTGEGIDELREALIE 161 (163)
T ss_pred HHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCc-eEEEe--eeccCCHHHHHHHHHh
Confidence 56667779999999999987766666655421 12223343 22222 2335666666655544
No 278
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=52.65 E-value=69 Score=29.57 Aligned_cols=59 Identities=15% Similarity=0.134 Sum_probs=38.8
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 447 KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+..+.|+++++|+..--++++.+...++.+..+.+-+.+| ++-|+|-.+|-+.+.+.+.
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iS---a~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVS---AKERLGTKILRRTIKELAK 96 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEE---ccccccHHHHHHHHHHHHh
Confidence 3458999999999876445555544445555555422233 4667888888888877764
No 279
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=52.48 E-value=7.4 Score=36.20 Aligned_cols=35 Identities=31% Similarity=0.402 Sum_probs=24.6
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
|.|.||||.+.-|.+-+..+++.-.-.+-|+|.-|
T Consensus 7 psGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~ 41 (137)
T cd00071 7 PSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG 41 (137)
T ss_pred CCCCCHHHHHHHHHhcCCccceecccccccCCCCC
Confidence 67999999888887766434445445567888755
No 280
>PRK12735 elongation factor Tu; Reviewed
Probab=52.39 E-value=77 Score=34.73 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCcEE-EEecCCCCCCHHHH-H----HHHHHHHHcC
Q 006673 438 NLARHIANTKAYGANVV-VAVNMFATDSKAEL-N----AVRNAAMAAG 479 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvV-VAINrF~tDT~aEI-~----~v~e~c~~~G 479 (636)
...+|+..++.+|+|.+ |++|+...-+++|+ + .++++++..+
T Consensus 115 qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~ 162 (396)
T PRK12735 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYD 162 (396)
T ss_pred hHHHHHHHHHHcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcC
Confidence 35589999999999966 68999875333332 2 3444555544
No 281
>PRK10536 hypothetical protein; Provisional
Probab=52.25 E-value=18 Score=38.36 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=27.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCcEEEEee
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVVTCLR 110 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~-aL~~~lg~~~~~~lR 110 (636)
..+|++|+ |+|.|||++++.++. +|-+. ..+.++..|
T Consensus 74 ~~lV~i~G----~aGTGKT~La~a~a~~~l~~~-~~~kIiI~R 111 (262)
T PRK10536 74 KQLIFATG----EAGCGKTWISAAKAAEALIHK-DVDRIIVTR 111 (262)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHHhcC-CeeEEEEeC
Confidence 45999998 799999999999988 45121 355566566
No 282
>PLN02165 adenylate isopentenyltransferase
Probab=52.11 E-value=11 Score=41.07 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++.|++|++.+ |-|.||||+++-|++.++
T Consensus 40 ~~~g~iivIiG----PTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 40 NCKDKVVVIMG----ATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCCCEEEEEC----CCCCcHHHHHHHHHHHcC
Confidence 46799999888 449999999999988884
No 283
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=51.85 E-value=18 Score=37.20 Aligned_cols=35 Identities=17% Similarity=0.085 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
|.|.++||++ |.|.||||.+.=++-.. .+.|.+++
T Consensus 34 p~gs~~lI~G----~pGtGKT~l~~qf~~~~-a~~Ge~vl 68 (259)
T TIGR03878 34 PAYSVINITG----VSDTGKSLMVEQFAVTQ-ASRGNPVL 68 (259)
T ss_pred ECCcEEEEEc----CCCCCHHHHHHHHHHHH-HhCCCcEE
Confidence 5799999999 57999999998875544 23476653
No 284
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=51.79 E-value=95 Score=28.49 Aligned_cols=63 Identities=16% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHhh--cCCcEEEEecCCCCCCHHH-H-------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 443 IANTKA--YGANVVVAVNMFATDSKAE-L-------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 443 IeNi~~--fGvPvVVAINrF~tDT~aE-I-------------~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
++.+++ -++|+|++.|+..-..+.+ + +...++|++.|...+..+ =++=|+|-.+|-+.+++.
T Consensus 93 ~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 93 YPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLEC--SALTQEGVREVFEEAIRA 170 (174)
T ss_pred HHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEe--cCCCCCCHHHHHHHHHHH
Confidence 444444 3899999999977543221 1 223457777776324333 346667777777777655
Q ss_pred h
Q 006673 507 C 507 (636)
Q Consensus 507 ~ 507 (636)
+
T Consensus 171 ~ 171 (174)
T smart00174 171 A 171 (174)
T ss_pred h
Confidence 4
No 285
>PRK04213 GTP-binding protein; Provisional
Probab=51.73 E-value=77 Score=30.23 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=36.7
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--------eEEEcCccccCccchhHHHHHHHHHhh
Q 006673 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--------DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~--------~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++..++|++|++|+..-...+ -+.+.+++++.|.. .+..+.. +=| |-.+|-+.+.+.+.
T Consensus 124 ~~~~~~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~SA--~~g-gi~~l~~~l~~~~~ 192 (201)
T PRK04213 124 DFLRELGIPPIVAVNKMDKIKNR-DEVLDEIAERLGLYPPWRQWQDIIAPISA--KKG-GIEELKEAIRKRLH 192 (201)
T ss_pred HHHHHcCCCeEEEEECccccCcH-HHHHHHHHHHhcCCccccccCCcEEEEec--ccC-CHHHHHHHHHHhhc
Confidence 34445799999999998753332 23445556666651 1333333 334 77777777776654
No 286
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=51.60 E-value=11 Score=37.06 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=36.8
Q ss_pred ccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCc
Q 006673 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (636)
Q Consensus 44 ~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~ 117 (636)
.+..|..|+-.+++++ ..| ++.+++ |-|+||||+.-.|.-.+ +......+|.++.|-+
T Consensus 5 ~~~~fr~~~~~~~l~~-------~~g-~~~i~G----~nGsGKStll~al~~l~----~~~~~~~~~~~~~~~~ 62 (197)
T cd03278 5 ELKGFKSFADKTTIPF-------PPG-LTAIVG----PNGSGKSNIIDAIRWVL----GEQSAKSLRGEKMSDV 62 (197)
T ss_pred EEeCCcCcCCCeeeec-------CCC-cEEEEC----CCCCCHHHHHHHHHHHh----ccccchhhcccCHHHH
Confidence 4566777755666653 237 777776 66999999887765443 3333445667666655
No 287
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=51.44 E-value=20 Score=32.92 Aligned_cols=37 Identities=14% Similarity=0.254 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMA 477 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~ 477 (636)
.+..|++-..++|+|+|+.-=-| |++|++.|++++++
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~---~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGF---SDEQIDELEELAKK 115 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSS---HHHHHHHHHHHTTT
T ss_pred HhHHHHHHHHhCCCCEEEECCCC---CHHHHHHHHHHhcc
Confidence 56778888889999999988777 78999999998876
No 288
>PRK13974 thymidylate kinase; Provisional
Probab=51.29 E-value=23 Score=35.09 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=33.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC----cEEEEeeCCCCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK----KVVTCLRQPSQGP 116 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~----~~~~~lRePSlGP 116 (636)
|++|.+-++ -|.||||.+--|.+-|. .-|+ ..++..|+|.-.|
T Consensus 3 g~~i~~eG~----dGsGKsT~~~~l~~~l~-~~g~~~~~~~~~~~~~p~~~~ 49 (212)
T PRK13974 3 GKFIVLEGI----DGCGKTTQIDHLSKWLP-SSGLMPKGAKLIITREPGGTL 49 (212)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHHH-hcCccccCCeeeeeeCCCCCc
Confidence 888999886 59999999999999994 4454 3677789987433
No 289
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=50.77 E-value=56 Score=32.45 Aligned_cols=45 Identities=22% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 006673 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (636)
Q Consensus 450 GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeG 495 (636)
|+|+.|.+..=.- +++||....+.|.++|+..+-.++.|..+|.-
T Consensus 116 g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at 160 (203)
T cd00959 116 GAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKTSTGFGPGGAT 160 (203)
T ss_pred CCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCC
Confidence 8999886665333 58899999999999999755566789766643
No 290
>PRK03839 putative kinase; Provisional
Probab=50.54 E-value=13 Score=35.44 Aligned_cols=24 Identities=33% Similarity=0.535 Sum_probs=19.3
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.|+++++ -|.||||++.-|++.++
T Consensus 2 ~I~l~G~----pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGT----PGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHhC
Confidence 4777776 39999999988888873
No 291
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=50.39 E-value=80 Score=29.43 Aligned_cols=66 Identities=8% Similarity=-0.084 Sum_probs=37.5
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..+.|.+... ++|+||+.|+..-..........++++..+.. +. +.=++=|+|-.++-+.+++.+-
T Consensus 94 ~~~~i~~~~~-~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~--e~Sa~~~~~v~~~f~~l~~~~~ 159 (166)
T cd00877 94 WHRDLVRVCG-NIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQ-YY--EISAKSNYNFEKPFLWLARKLL 159 (166)
T ss_pred HHHHHHHhCC-CCcEEEEEEchhcccccCCHHHHHHHHHcCCE-EE--EEeCCCCCChHHHHHHHHHHHH
Confidence 3344444333 89999999998764222112334556555554 32 2334446777777777765553
No 292
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.39 E-value=9.8 Score=34.83 Aligned_cols=24 Identities=46% Similarity=0.674 Sum_probs=19.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+|++++. .|.||||++.-|.+.++
T Consensus 1 li~l~G~----~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 1 IIVVMGV----SGSGKSTVGKALAERLG 24 (150)
T ss_pred CEEEEcC----CCCCHHHHHHHHHhhcC
Confidence 4666664 69999999999988763
No 293
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=50.35 E-value=71 Score=28.80 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=36.8
Q ss_pred cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 449 fGvPvVVAINrF~tD--T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
.++|+||++|+-.-- ...+.+.+.++|++.++. +..+.. +=|+|-.+|-+.+++.
T Consensus 105 ~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~v~~l~~~l~~~ 161 (163)
T cd01860 105 PNIIIALVGNKADLESKRQVSTEEAQEYADENGLL-FFETSA--KTGENVNELFTEIAKK 161 (163)
T ss_pred CCCeEEEEEECccccccCcCCHHHHHHHHHHcCCE-EEEEEC--CCCCCHHHHHHHHHHH
Confidence 569999999986532 222455677888888865 444433 4477888887777654
No 294
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=50.34 E-value=18 Score=40.38 Aligned_cols=64 Identities=23% Similarity=0.287 Sum_probs=41.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC-CccccccCCCCCCceeeecCccccccccchh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG-PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDI 146 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG-P~FGiKGGAaGGGysqv~Pme~iNLHfTGD~ 146 (636)
.++|-||+.+ ||||||-=|++-| ...|+++.++= .+| |......+ ..+. |+=+..+.|+++--|
T Consensus 104 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~~~G---niG~p~l~~~~~---~~~~-VlE~ss~ql~~~~~~ 168 (454)
T PRK01368 104 LKFIAITGTN------GKSTTTALISHIL-NSNGLDYPVAG---NIGVPALQAKAS---KDGY-VLELSSFQLDLVKTF 168 (454)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEEEc---cCCHHHhcccCC---CCEE-EEEcCchhhcccccc
Confidence 4689999885 9999999999999 58899876540 122 21222221 2333 666777777665433
No 295
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=50.33 E-value=8.6 Score=33.48 Aligned_cols=18 Identities=50% Similarity=0.722 Sum_probs=16.0
Q ss_pred CCCCCcchhHHHHHHHHh
Q 006673 81 PLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~ 98 (636)
|.|.||||++--|++.++
T Consensus 6 ~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 6 PPGTGKTTLARALAQYLG 23 (132)
T ss_dssp STTSSHHHHHHHHHHHTT
T ss_pred cCCCCeeHHHHHHHhhcc
Confidence 789999999999988883
No 296
>COG4240 Predicted kinase [General function prediction only]
Probab=50.29 E-value=13 Score=39.45 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=25.6
Q ss_pred EEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEe
Q 006673 73 VVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL 109 (636)
Q Consensus 73 lVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~l 109 (636)
|+-+| --|-|+||||+++-|.--| .+.|-.+++.+
T Consensus 51 li~gi-sGpQGSGKStls~~i~~~L-~~kg~ert~~l 85 (300)
T COG4240 51 LIVGI-SGPQGSGKSTLSALIVRLL-AAKGLERTATL 85 (300)
T ss_pred eEEEe-ecCCCCchhhHHHHHHHHH-HHhcccceEEe
Confidence 33444 2489999999999999999 57774455544
No 297
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=49.97 E-value=12 Score=41.05 Aligned_cols=27 Identities=41% Similarity=0.554 Sum_probs=23.9
Q ss_pred CCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 78 TPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 78 tPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
.||..|+|||.++.||..+| .+.|.+.
T Consensus 8 ~p~~~~~G~tsi~lgLl~~l-~~k~~kv 34 (354)
T COG0857 8 IPTETGVGKTSISLGLLRAL-EQKGLKV 34 (354)
T ss_pred eccCCCccHHHHHHHHHHHH-HHcCcee
Confidence 59999999999999999999 4777763
No 298
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=49.93 E-value=34 Score=32.29 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=24.7
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcC
Q 006673 444 ANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAG 479 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~aE----I~~v~e~c~~~G 479 (636)
+.++.+++|+++++|+.....+++ ++.+++++...+
T Consensus 123 ~~~~~~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~ 162 (179)
T TIGR03598 123 EWLRERGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDA 162 (179)
T ss_pred HHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhcc
Confidence 334568999999999987765554 455556666544
No 299
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=49.87 E-value=14 Score=35.47 Aligned_cols=27 Identities=26% Similarity=0.286 Sum_probs=21.3
Q ss_pred CCCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 82 ~GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
.|.||||++--|...|. ..|.++. .+.
T Consensus 8 ~gsGKTtl~~~l~~~l~-~~G~~V~-viK 34 (155)
T TIGR00176 8 KNSGKTTLIERLVKALK-ARGYRVA-TIK 34 (155)
T ss_pred CCCCHHHHHHHHHHHHH-hcCCeEE-EEe
Confidence 49999999999999994 5687644 444
No 300
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=49.83 E-value=17 Score=36.73 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=23.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
||+++|. -|.||||.+-.|++.|. ..|.+.
T Consensus 1 LIvl~G~----pGSGKST~a~~La~~l~-~~~~~v 30 (249)
T TIGR03574 1 LIILTGL----PGVGKSTFSKELAKKLS-EKNIDV 30 (249)
T ss_pred CEEEEcC----CCCCHHHHHHHHHHHHH-HcCCce
Confidence 4777776 59999999999999994 445544
No 301
>PRK05439 pantothenate kinase; Provisional
Probab=49.75 E-value=14 Score=39.86 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=30.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccc
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNL 140 (636)
+|.||| |-|.||||++--|...|+ +.. +|-..+|++||+|-+
T Consensus 88 iIgIaG----~~gsGKSTla~~L~~~l~-~~~-----------------------~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 88 IIGIAG----SVAVGKSTTARLLQALLS-RWP-----------------------EHPKVELVTTDGFLY 129 (311)
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHHH-hhC-----------------------CCCceEEEecccccc
Confidence 666666 569999999999988884 331 123468999998854
No 302
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=49.34 E-value=18 Score=39.21 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=42.3
Q ss_pred HHHHHHHcCCCCcccccccC----eeeeeccc--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc
Q 006673 31 ISEIAQELNLKPNHYDLYGK----YKAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (636)
Q Consensus 31 I~~ia~~lgl~~~~l~~YG~----~kAKi~~~--~~~~~-~--~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~l 101 (636)
+.+|-+++|=. .+-..|. ...+++.. -|+.+ . .=|.|++++|.+ |.|.||||++.-++-.. .+.
T Consensus 10 ~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~G----p~GsGKTtLal~~~~~~-~~~ 82 (325)
T cd00983 10 LKQIEKKFGKG--SIMKLGDDAVQDVEVIPTGSLSLDIALGIGGYPKGRIIEIYG----PESSGKTTLALHAIAEA-QKL 82 (325)
T ss_pred HHHHHHHhCCc--ceEECccccccCCceecCCCHHHHHHhcCCCccCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 56666666643 2233332 12244433 24442 2 347899999999 78999999999887666 355
Q ss_pred CCcEE
Q 006673 102 DKKVV 106 (636)
Q Consensus 102 g~~~~ 106 (636)
|.+++
T Consensus 83 g~~~v 87 (325)
T cd00983 83 GGTVA 87 (325)
T ss_pred CCCEE
Confidence 55544
No 303
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=49.23 E-value=16 Score=33.83 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=20.4
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~ 100 (636)
...+++|+|+| |.|.||||+..-+.+.+..+
T Consensus 21 ~~~~~~~ll~G----~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 21 SGSPRNLLLTG----ESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp S-----EEE-B-----TTSSHHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEC----CCCCCHHHHHHHHHHHHHhc
Confidence 35689999999 58999999999888888533
No 304
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=49.20 E-value=16 Score=38.60 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+++.|+++++ -|.||||++.-|++.|
T Consensus 131 ~~~~~I~l~G~----~GsGKStvg~~La~~L 157 (309)
T PRK08154 131 ARRRRIALIGL----RGAGKSTLGRMLAARL 157 (309)
T ss_pred cCCCEEEEECC----CCCCHHHHHHHHHHHc
Confidence 35889999997 6999999998888776
No 305
>PF02171 Piwi: Piwi domain; InterPro: IPR003165 This domain is found in the stem cell self-renewal protein Piwi and its relatives in Drosophila melanogaster []. It has been found in the C-terminal of a number of proteins which also contain the PAZ domain (IPR003100 from INTERPRO) in their central region, for example the Argonaute proteins. Several of these proteins have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 4F1N_B 3LUH_B 4EI1_A 3QX8_A 3LUC_C 3LUJ_B 3LUD_B 3QX9_A 3LUG_B 3LUK_B ....
Probab=49.04 E-value=49 Score=34.20 Aligned_cols=120 Identities=17% Similarity=0.086 Sum_probs=74.9
Q ss_pred HHHHHHHhhcCCCCeEEeeccccccccchhcccc-ccccCCC---CcceEEEEeee--hhhhhcCCCCCccCCCCCcccc
Q 006673 351 VADKIALKLVGPGGFVVTEAGFGADIGAEKFMNI-KCRYSGL---TPQCAVIVATI--RALKMHGGGPQVVAGKPLDHAY 424 (636)
Q Consensus 351 iAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dI-kcr~~gl---~P~avVlVaTv--RALK~HGG~~~~~~g~pL~~~l 424 (636)
|+-++-.||+|.. +.+-+.-...++..+=|+=| .|+.... .|+.+-+|+++ ...+|.+...... -
T Consensus 50 i~lkinaKlGG~n-~~~~~~~~~~~~~~~miIGidv~h~~~~~~~~~sv~g~~~s~~~~~~~~~~~~~~~~--------~ 120 (302)
T PF02171_consen 50 IALKINAKLGGIN-PWLLDSPPSIDLKNTMIIGIDVSHPSPGSDKNPSVVGFVASFDSDGSKYFSSVRFQD--------S 120 (302)
T ss_dssp HHHHHHHHTTTBS-EEECSCSSGSSESEEEEEEEEEEEESSTCTCSCEEEEEEEEESTTTCEEEEEEEEEC--------T
T ss_pred HHHHHHHhCCCee-eeecccccccccCceEEEEEEEEecCcccCCcceeeEEEEeccCccccccceeEEec--------c
Confidence 5677888898765 56666655333311112111 2444444 49999999999 7888887765432 3
Q ss_pred cccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecC-------CCCCCHHHHHHHHHHHHHcC
Q 006673 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-------FATDSKAELNAVRNAAMAAG 479 (636)
Q Consensus 425 ~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINr-------F~tDT~aEI~~v~e~c~~~G 479 (636)
.+|..+.|+.-+.+..++.++..+-..|-=|.|=| |..=-++|++.+++.|.+.+
T Consensus 121 ~~e~~~~l~~~~~~~L~~~~~~~~~~~P~~IiiyRdGvse~~~~~v~~~Ei~~i~~a~~~~~ 182 (302)
T PF02171_consen 121 GQEIIDNLEEIIKEALKEFKKNNGKWLPERIIIYRDGVSEGQFKKVLEEEIEAIKEAIKELG 182 (302)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTTT-TTSEEEEEEES--GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhcchhhHHHHHHHHHHHHcCCCCCceEEEEEcccCHHhhcccHHHHHHHHHHHHhhcc
Confidence 46777888887777666665555533555444433 22223669999999998776
No 306
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=49.01 E-value=70 Score=28.89 Aligned_cols=55 Identities=7% Similarity=-0.057 Sum_probs=34.9
Q ss_pred hcCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 448 AYGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 448 ~fGvPvVVAINrF~tD-T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
..++|++|++|+-... .+...+...+++++.++. +..+.. +=|+|-.++-+.+++
T Consensus 104 ~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~gi~~~~~~~~~ 159 (161)
T cd01863 104 NNDIVKMLVGNKIDKENREVTREEGLKFARKHNML-FIETSA--KTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCcEEEEEECCcccccccCHHHHHHHHHHcCCE-EEEEec--CCCCCHHHHHHHHHH
Confidence 4789999999986542 222334566777777775 333332 336787777776654
No 307
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=48.98 E-value=3.5e+02 Score=28.57 Aligned_cols=95 Identities=23% Similarity=0.278 Sum_probs=49.4
Q ss_pred HHHHHhh-c-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE---cCc-cccCccch-----hHHHHHHHHHhhcC
Q 006673 442 HIANTKA-Y-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV---CSH-HAHGGKGA-----VDLGIAVQRACENV 510 (636)
Q Consensus 442 HIeNi~~-f-GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~av---s~~-wa~GGeGa-----~eLA~aVv~a~e~~ 510 (636)
++..+++ + ..|+++-++-. .+.+|+..+.+.+++.|+..+.+ |-+ ..+.|.|+ .++..++++.+.+.
T Consensus 89 ~~~~~~~~~~~~p~i~si~G~--~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~ 166 (299)
T cd02940 89 EIRELKKDFPDKILIASIMCE--YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREA 166 (299)
T ss_pred HHHHHHhhCCCCeEEEEecCC--CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHh
Confidence 3444444 3 57888777653 35678777777777778753444 211 11122221 34556666666431
Q ss_pred ---CCCCcccCCCCCCHHHHHHHHHH---HhCCCceeeC
Q 006673 511 ---TQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEYS 543 (636)
Q Consensus 511 ---~s~fk~LY~~~~~L~eKIetIA~---IYGA~~V~~S 543 (636)
|=-.|.-- +. +.+..+|+ -.|+++|..+
T Consensus 167 ~~~Pv~vKl~~--~~---~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 167 VKIPVIAKLTP--NI---TDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred cCCCeEEECCC--Cc---hhHHHHHHHHHHcCCCEEEEe
Confidence 11133221 11 13555665 4688988743
No 308
>PF07005 DUF1537: Protein of unknown function, DUF1537; InterPro: IPR010737 This entry represents a conserved region found in a range of Proteobacteria as well as the Gram-positive Oceanobacillus iheyensis. This entry includes YgbK from Escherichia coli, which is dependent upon FlhDC, the master regulator of the flagellar genes. The ygbK gene appears to be regulated by sigmaF [].; PDB: 3DQQ_B 1YZY_B.
Probab=48.91 E-value=16 Score=36.31 Aligned_cols=69 Identities=26% Similarity=0.344 Sum_probs=49.7
Q ss_pred cCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 427 eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
=+++.|++|-..|..+++++.+-|..+|| |..-|++.++.|-+.+.+.+.+ + .|..++- ||.++.+.
T Consensus 9 i~l~~v~~g~~~l~~~l~~~~~~g~~ivV----~Da~t~~DL~~ia~a~~~~~~~-~----l~vGsag----la~aL~~~ 75 (223)
T PF07005_consen 9 IDLEDVRRGPEALSAALAALQAEGARIVV----FDAETDEDLDAIAEALLELGRR-V----LWVGSAG----LAAALARA 75 (223)
T ss_dssp E-HHHHCC-HHHHHHHHHHHHHTTECEEE----E-BSSCHHHHHHHHHCTT-S--------EEEESCH----HHHHHHHH
T ss_pred EEHHHHhCcHHHHHHHHHHHHhCCCcEEE----EecCCHHHHHHHHHHHHhCCCc-e----EEecchH----HHHHHHhh
Confidence 36788999999999999999999999998 7999999999999998887765 2 4443333 55555555
Q ss_pred hh
Q 006673 507 CE 508 (636)
Q Consensus 507 ~e 508 (636)
..
T Consensus 76 ~~ 77 (223)
T PF07005_consen 76 LA 77 (223)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 309
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=48.76 E-value=27 Score=39.68 Aligned_cols=87 Identities=21% Similarity=0.249 Sum_probs=0.0
Q ss_pred ccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHH---------------hHHHHHHHH
Q 006673 381 FMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGC---------------VNLARHIAN 445 (636)
Q Consensus 381 F~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~---------------~NL~kHIeN 445 (636)
+.+++|-.. .|+.+ ..+|++++-.-+++. .+...|.+.+++++ .|++.-.+-
T Consensus 130 ~IaL~~~s~--dp~~v--~~~Vk~V~~~~dvPL---------SIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~l 196 (450)
T PRK04165 130 MVALRNASG--DPEKF--AKAVKKVAETTDLPL---------ILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAEL 196 (450)
T ss_pred EEEEeCCCC--CHHHH--HHHHHHHHHhcCCCE---------EEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHH
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 006673 446 TKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~av 485 (636)
+++||.|+|| .+.| -+++..+.+.|.++|+.+.++
T Consensus 197 a~~yg~pvVv----~~~d-l~~L~~lv~~~~~~GI~dIIL 231 (450)
T PRK04165 197 AKEYNCPLVV----KAPN-LEELKELVEKLQAAGIKDLVL 231 (450)
T ss_pred HHHcCCcEEE----Echh-HHHHHHHHHHHHHcCCCcEEE
No 310
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=48.55 E-value=91 Score=29.19 Aligned_cols=59 Identities=14% Similarity=0.091 Sum_probs=40.3
Q ss_pred cCCcEEEEecCCCCCCHH------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKA------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a------EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
-++|+|++.|+..-..+. ..+...++|.+.+...+..+. ++=|+|-.++-+.+++.+..
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 104 PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS--AKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc--CCCCCCHHHHHHHHHHHHHh
Confidence 479999999997643211 134567788888873344444 56778888888888777643
No 311
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=48.51 E-value=20 Score=38.93 Aligned_cols=32 Identities=31% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.+.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 101 ~~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~ 132 (433)
T TIGR01087 101 PLPVVAITGTN------GKTTTTSLLYHLL-KAAGLKAF 132 (433)
T ss_pred CCCEEEEECCC------CHHHHHHHHHHHH-HhcCCCeE
Confidence 35799999985 9999999999999 57888754
No 312
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=48.46 E-value=14 Score=41.01 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=24.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..|+||+++ |-|.|||+..-+|+|-|.
T Consensus 176 ~NRliLlhG----PPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHG----PPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeC----CCCCChhHHHHHHHHhhe
Confidence 367999998 789999999999999995
No 313
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=48.35 E-value=19 Score=40.11 Aligned_cols=32 Identities=28% Similarity=0.190 Sum_probs=27.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.+.|-||+.+ ||||||-=|.+.| ...|+++..
T Consensus 121 ~~~I~VTGTn------GKTTTt~ml~~iL-~~~g~~~~~ 152 (498)
T PRK02006 121 PKVLAITGTN------GKTTTTALTGLLC-ERAGKKVAV 152 (498)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCCEEE
Confidence 3799999986 9999999999999 578988664
No 314
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=48.28 E-value=60 Score=34.03 Aligned_cols=61 Identities=23% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~ 501 (636)
.+.+++..++..++|+|+++|+-.-.++.+......+..+.|.. +...+ ++=|+|-.+|-+
T Consensus 97 ~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~-v~~vS--A~~g~gi~~L~~ 157 (287)
T cd01854 97 LLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYP-VLAVS--AKTGEGLDELRE 157 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCe-EEEEE--CCCCccHHHHHh
Confidence 46777877888999999999997764444433334445667775 33322 334455544443
No 315
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=48.27 E-value=93 Score=27.86 Aligned_cols=56 Identities=18% Similarity=0.063 Sum_probs=36.4
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.+.|+|++.|+-....+ ...+..++++.+.+.. +..+ =++-|+|-.++-+.+++.+
T Consensus 109 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 109 ENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFK-YFET--SACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCceEEEEEEchhcccccccCHHHHHHHHHHcCCe-EEEE--ECCCCCCHHHHHHHHHHHH
Confidence 56999999999875421 1234445677777865 3322 2455888888887776543
No 316
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=47.93 E-value=14 Score=35.82 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|+.|++++ |-|.||||+.-.|..-+
T Consensus 23 ~~g~~i~I~G----~tGSGKTTll~aL~~~i 49 (186)
T cd01130 23 EARKNILISG----GTGSGKTTLLNALLAFI 49 (186)
T ss_pred hCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 3488999999 77999999998888777
No 317
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=47.92 E-value=57 Score=35.10 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=58.5
Q ss_pred ehhhhhcCCCCCccCCCCCcccccccCHHHHHHH--HhHHHHHHHHHhhcCCcEEEE--ecCCCCCCHHHHHHHHHHHHH
Q 006673 402 IRALKMHGGGPQVVAGKPLDHAYLNENVALVEAG--CVNLARHIANTKAYGANVVVA--VNMFATDSKAELNAVRNAAMA 477 (636)
Q Consensus 402 vRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G--~~NL~kHIeNi~~fGvPvVVA--INrF~tDT~aEI~~v~e~c~~ 477 (636)
++.||-. |+.....|. +....+-++.+.++ ++...+-|++++++|++.|.+ |=-+|.+|.+++....+++.+
T Consensus 103 l~~l~~~-Gv~risiGv---qS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (360)
T TIGR00539 103 CKGLKGA-GINRLSLGV---QSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKE 178 (360)
T ss_pred HHHHHHc-CCCEEEEec---ccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHc
Confidence 4677766 466555552 44555667777543 677888999999999975433 556899999999999999999
Q ss_pred cCCCeEEEc
Q 006673 478 AGAFDAVVC 486 (636)
Q Consensus 478 ~Gv~~~avs 486 (636)
+++..+.+.
T Consensus 179 l~~~~is~y 187 (360)
T TIGR00539 179 LPINHLSAY 187 (360)
T ss_pred cCCCEEEee
Confidence 998644433
No 318
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=47.80 E-value=64 Score=29.03 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=40.4
Q ss_pred HhHHHHHHHHHhh-cC--CcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 436 CVNLARHIANTKA-YG--ANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 436 ~~NL~kHIeNi~~-fG--vPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
+.++...++.++. .+ +|+++++|+-.-.... -.+.+.+.+++.++. +. +.=++=|+|-.+|-+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 88 FDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAM-FI--ETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCE-EE--EEeCCCCCCHHHHHHHHHH
Confidence 5556656665543 44 9999999987762221 223455666666764 32 2334566777777776654
No 319
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=47.77 E-value=24 Score=29.78 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=28.8
Q ss_pred ccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 44 HYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 44 ~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+|..||.|.. .++++ .++|+..++|+ |-|.||||+-=.+.=+|
T Consensus 5 ~L~Nw~~f~~-~~~~~------~~~g~~tli~G----~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 5 QLVNWGSFDG-ETIDF------DPRGDVTLITG----PNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEeccCccCC-eEEee------cCCCcEEEEEC----CCCCCHHHHHHHHHHHH
Confidence 4566777665 23332 25678888888 56999999876665555
No 320
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=47.66 E-value=76 Score=34.38 Aligned_cols=63 Identities=21% Similarity=0.137 Sum_probs=40.7
Q ss_pred HHHHhhcCCcEEEEecCCCCC-CHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 443 IANTKAYGANVVVAVNMFATD-SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tD-T~aEI~~v~e~c~~~-----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+..+.+.|.|+||++|++.-. .+++.+.+++...+. +++ ++.+. |+=|.|-.+|-+.+.+..+
T Consensus 276 ~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-vi~~S--A~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 276 AGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP-IVFIS--ALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred HHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc-eEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 444566899999999998764 566666666665432 233 33333 3446777777777776654
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=47.66 E-value=30 Score=36.32 Aligned_cols=41 Identities=29% Similarity=0.248 Sum_probs=32.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
..++.|.||+ |-|.||||+..-|+..+. ..|+++.+.-=.|
T Consensus 32 ~~~~~i~i~G----~~G~GKttl~~~l~~~~~-~~~~~v~~i~~D~ 72 (300)
T TIGR00750 32 GNAHRVGITG----TPGAGKSTLLEALGMELR-RRGLKVAVIAVDP 72 (300)
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 5688898886 579999999999999994 6788876543333
No 322
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=47.58 E-value=43 Score=38.95 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=40.6
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 446 TKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+++.++|+|+++|+..-..+.++. ...+++++.|++ +.... ++=|+|-.+|-+.+.+.+
T Consensus 95 l~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~p-vv~tS--A~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 95 LLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVP-VVPTS--ATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHh
Confidence 345799999999998653322222 246677788986 44333 566889999998888764
No 323
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=47.53 E-value=1.8e+02 Score=28.70 Aligned_cols=44 Identities=25% Similarity=0.304 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCC----CCCHHHHHHHHHHHHHcCCC
Q 006673 438 NLARHIANTKAYGANVVVAVNMFA----TDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~----tDT~aEI~~v~e~c~~~Gv~ 481 (636)
.+.+=++-+++||.++.+++|--. .+-..+++.+...|.+.|..
T Consensus 94 ~l~~~i~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~v~~m~~e~G~~ 141 (215)
T PRK13813 94 SLKAVVEAAAESGGKVFVVVEMSHPGALEFIQPHADKLAKLAQEAGAF 141 (215)
T ss_pred HHHHHHHHHHhcCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 466667888999999999998632 22245788888888888875
No 324
>PRK01060 endonuclease IV; Provisional
Probab=47.45 E-value=1.3e+02 Score=30.65 Aligned_cols=97 Identities=15% Similarity=0.095 Sum_probs=57.5
Q ss_pred cccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCC-CCCHH-HHHH----HHHHHH-HcCCCeEEEcCccccCcc
Q 006673 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFA-TDSKA-ELNA----VRNAAM-AAGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 423 ~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~-tDT~a-EI~~----v~e~c~-~~Gv~~~avs~~wa~GGe 494 (636)
.+..+|.+-.++....++++|+-.+++|.|.||.- -.+. ..+++ -++. +++.++ +.|+. +++-++|..+..
T Consensus 75 nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~h~G~~~~~~~~~~~~~~~~e~l~~l~~~~~gv~-l~iEn~~~~~~~ 153 (281)
T PRK01060 75 NLGNPNKEILEKSRDFLIQEIERCAALGAKLLVFHPGSHLGDIDEEDCLARIAESLNEALDKTQGVT-IVLENTAGQGSE 153 (281)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCcHHHHHHHHHHHHHHHHhcCCCCE-EEEecCCCCCCc
Confidence 35567778888999999999999999999987762 1221 12222 3343 333332 35775 888888766532
Q ss_pred c--hhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 495 G--AVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 495 G--a~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
- ..+-...+++.++. ++.+.+.+|..
T Consensus 154 ~~~~~~~~~~l~~~v~~-~~~vg~~lD~g 181 (281)
T PRK01060 154 LGRRFEELARIIDGVED-KSRVGVCLDTC 181 (281)
T ss_pred ccCCHHHHHHHHHhcCC-cccEEEEEeHH
Confidence 1 12233445555543 22266666543
No 325
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=47.40 E-value=17 Score=38.81 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=25.9
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccc
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNL 140 (636)
|-|.||||++--|..-| .++ |+ +|..++++||.+.+
T Consensus 70 ~~GSGKSTlar~L~~ll-~~~----------~~-------------~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 70 SVAVGKSTTARILQALL-SRW----------PE-------------HRKVELITTDGFLH 105 (290)
T ss_pred CCCCCHHHHHHHHHHHH-hhc----------CC-------------CCceEEEecccccc
Confidence 67999999997776656 232 21 35678999998754
No 326
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.26 E-value=23 Score=41.26 Aligned_cols=28 Identities=39% Similarity=0.596 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..|++|.+++ || |.|||||+.-|+..+.
T Consensus 348 ~~G~vIaLVG--Pt--GvGKTTtaakLAa~la 375 (559)
T PRK12727 348 ERGGVIALVG--PT--GAGKTTTIAKLAQRFA 375 (559)
T ss_pred cCCCEEEEEC--CC--CCCHHHHHHHHHHHHH
Confidence 3588888887 44 9999999999988773
No 327
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=47.23 E-value=21 Score=39.40 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.+.|-||+.+ ||||||-=|++.| ...|+++..
T Consensus 121 ~~~~I~VTGTn------GKTTTt~mi~~iL-~~~g~~~~~ 153 (480)
T PRK01438 121 PAPWLAVTGTN------GKTTTVQMLASML-RAAGLRAAA 153 (480)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HHcCCCeEE
Confidence 56799999985 9999999999999 578887653
No 328
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.20 E-value=12 Score=43.64 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=23.7
Q ss_pred CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 65 GSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 65 ~~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+-.+++.|+|+ |+|.|||||--=|+.-|
T Consensus 106 ~~l~~~iLLltG----PsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 106 PKLGSRILLLTG----PSGCGKSTTVKVLSKEL 134 (634)
T ss_pred cCCCceEEEEeC----CCCCCchhHHHHHHHhh
Confidence 344578999998 89999999987777666
No 329
>PLN02748 tRNA dimethylallyltransferase
Probab=47.02 E-value=15 Score=41.88 Aligned_cols=29 Identities=38% Similarity=0.507 Sum_probs=24.5
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.+++++|+|++ |-|.||||+++-|++.++
T Consensus 19 ~~~~~~i~i~G----ptgsGKs~la~~la~~~~ 47 (468)
T PLN02748 19 KGKAKVVVVMG----PTGSGKSKLAVDLASHFP 47 (468)
T ss_pred CCCCCEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 35688999988 459999999999999884
No 330
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=46.90 E-value=29 Score=34.27 Aligned_cols=54 Identities=15% Similarity=0.234 Sum_probs=39.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDI 146 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~ 146 (636)
+.|.+++|+|- .|.||||.+.-++-.+....|.+ =|.|+.+.
T Consensus 11 ~~G~l~lI~G~----~G~GKT~~~~~~~~~~~~~~g~~----------------------------------vly~s~E~ 52 (242)
T cd00984 11 QPGDLIIIAAR----PSMGKTAFALNIAENIAKKQGKP----------------------------------VLFFSLEM 52 (242)
T ss_pred CCCeEEEEEeC----CCCCHHHHHHHHHHHHHHhCCCc----------------------------------eEEEeCCC
Confidence 67999999994 69999999988765552221221 25778888
Q ss_pred hHHHHHHhHHHH
Q 006673 147 HAITAANNLLAA 158 (636)
Q Consensus 147 hAItaA~NLlaA 158 (636)
+.-...+++++.
T Consensus 53 ~~~~~~~r~~~~ 64 (242)
T cd00984 53 SKEQLLQRLLAS 64 (242)
T ss_pred CHHHHHHHHHHH
Confidence 888888888764
No 331
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=46.80 E-value=22 Score=42.38 Aligned_cols=35 Identities=31% Similarity=0.308 Sum_probs=29.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.++++||+ ++|.||||+..++.+++ ...|++.+.|
T Consensus 368 ~~~~il~G----~aGTGKTtll~~i~~~~-~~~g~~V~~~ 402 (744)
T TIGR02768 368 GDIAVVVG----RAGTGKSTMLKAAREAW-EAAGYRVIGA 402 (744)
T ss_pred CCEEEEEe----cCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 46889998 68999999999999999 4678876654
No 332
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=46.74 E-value=16 Score=41.85 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=23.5
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.+..++.|+|| |+|.|||||.--|++-|+
T Consensus 42 ~~~~~iLlLtG----P~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 42 SSPKRILLLTG----PSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CCCcceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 34567888898 899999999888877763
No 333
>COG1159 Era GTPase [General function prediction only]
Probab=46.71 E-value=1.3e+02 Score=32.68 Aligned_cols=92 Identities=13% Similarity=-0.052 Sum_probs=59.4
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHH-HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCC
Q 006673 441 RHIANTKAYGANVVVAVNMFATDSKAE-LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tDT~aE-I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
.-++.+++-..|++++||+-..-++++ +..+.++..+..-+ ..+-..=|.-|.+-..|.+.+.+.+.+++.-|-.-|=
T Consensus 105 ~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f-~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~i 183 (298)
T COG1159 105 FILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPF-KEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQI 183 (298)
T ss_pred HHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCc-ceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhc
Confidence 345566666689999999866444444 44555555555443 3445566889999999999999988654332333333
Q ss_pred CCCCHHHHHHHHHH
Q 006673 520 LDVSIKEKIDTIAR 533 (636)
Q Consensus 520 ~~~~L~eKIetIA~ 533 (636)
.+.|-+-.+..|-|
T Consensus 184 tD~~~rf~~aEiiR 197 (298)
T COG1159 184 TDRPERFLAAEIIR 197 (298)
T ss_pred cCChHHHHHHHHHH
Confidence 45666666665555
No 334
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=46.70 E-value=71 Score=28.80 Aligned_cols=56 Identities=9% Similarity=-0.092 Sum_probs=32.1
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHc--CCCeEEEcCccccCccchhHHHHHH
Q 006673 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAA--GAFDAVVCSHHAHGGKGAVDLGIAV 503 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~--Gv~~~avs~~wa~GGeGa~eLA~aV 503 (636)
..+.|++++.|+.......+.+.+.+.+... +-..+-+.++=++=|+|-.++=+.+
T Consensus 98 ~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l 155 (158)
T cd00878 98 LKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL 155 (158)
T ss_pred cCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence 4799999999998876655455555554422 1111223233344467766664443
No 335
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=46.68 E-value=25 Score=35.52 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.+++|+| |.|.||||++.-++..+
T Consensus 28 ~~g~~~~i~g----~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 28 RKGELIILTA----GTGVGKTTFLREYALDL 54 (271)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5699999998 56999999999887766
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.59 E-value=24 Score=39.09 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=19.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+++|++.+ || |.|||||+.-|+-.+
T Consensus 174 ~~vi~lvG--pt--GvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVG--PT--GVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEEC--CC--CCCHHHHHHHHHHHH
Confidence 45666644 55 999999999999777
No 337
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=46.48 E-value=47 Score=29.42 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHH
Q 006673 436 CVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNA 474 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvP-vVVAINrF~tDT~aEI~~v~e~ 474 (636)
++...+-++.+++.|+| ++..+=-++.+|++|++.+.++
T Consensus 126 ~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 126 FERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 45666777888889999 7888888999999999888775
No 338
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=46.42 E-value=62 Score=34.40 Aligned_cols=50 Identities=12% Similarity=0.079 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 006673 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs 486 (636)
|....+.|++++++|+++.|... ...++.+|++.+.+++.++|+..+.+.
T Consensus 131 f~~v~~~i~~l~~~g~~v~v~~v-v~~~N~~~l~~~~~~~~~lg~~~i~~~ 180 (358)
T TIGR02109 131 FEQKLAMARAVKAAGLPLTLNFV-IHRHNIDQIPEIIELAIELGADRVELA 180 (358)
T ss_pred HHHHHHHHHHHHhCCCceEEEEE-eccCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 55666778888899999877554 345788999999999999999765554
No 339
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=46.37 E-value=28 Score=35.10 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=29.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCcE-EEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~-~aL~~~lg~~~-~~~lReP 112 (636)
|.|..+||++ |.|.||||.+.=+. .++ +-|.++ .+++-||
T Consensus 19 ~~gs~~lI~G----~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 19 PERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGIYVALEEH 60 (237)
T ss_pred cCCeEEEEEc----CCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeCC
Confidence 6799999999 88999999887543 445 347776 4555553
No 340
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=46.29 E-value=25 Score=35.65 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
+.|..++|++ |.|.||||++.-+...+ .+-|.+
T Consensus 22 ~~g~~~~i~G----~~G~GKTtl~~~~~~~~-~~~g~~ 54 (230)
T PRK08533 22 PAGSLILIEG----DESTGKSILSQRLAYGF-LQNGYS 54 (230)
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCc
Confidence 6789999998 56999999987776665 233544
No 341
>PLN02840 tRNA dimethylallyltransferase
Probab=46.24 E-value=15 Score=41.23 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+++++|++++ |.|.||||+++-|++.++
T Consensus 19 ~~~~vi~I~G----ptgsGKTtla~~La~~~~ 46 (421)
T PLN02840 19 KKEKVIVISG----PTGAGKSRLALELAKRLN 46 (421)
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4577888877 569999999999999985
No 342
>PRK13948 shikimate kinase; Provisional
Probab=46.17 E-value=18 Score=35.80 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=22.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.+..|+++++ .|.||||+..-|++.|+
T Consensus 8 ~~~~~I~LiG~----~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGF----MGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 45667888886 59999999988888773
No 343
>TIGR02385 RelE_StbE addiction module toxin, RelE/StbE family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all are found adjacent to RelB/DinJ family antitoxin genes (TIGR02384), as are most genes found by the resulting model. StbE from Morganella morganii plasmid R485 shows typical behaviour for an addiction module toxin. It cannot be cloned without its partner (the antitoxin), whereas its partner cannot confer plasmid stability without StbE.
Probab=46.16 E-value=25 Score=29.02 Aligned_cols=50 Identities=16% Similarity=0.196 Sum_probs=27.6
Q ss_pred eeeCHHHHHHHHHHHhCCCCCCCe------eEeecC---CCCCCCCCCCCCCCC-ceEEee
Q 006673 540 VEYSEEAEKQIEMYTGQGFSGLPI------CMAKTQ---YSFSHNAAEKGAPTG-FILPIR 590 (636)
Q Consensus 540 V~~S~~A~kqLk~ie~lG~~~LPV------CmAKTq---ySlSdDp~l~G~P~g-f~l~Vr 590 (636)
|.||+.|+++|+++.+.=-...|- ++.++. .++.+.| ++|..+| |.+.|.
T Consensus 2 i~~t~~A~~dl~~i~~~i~~~~~~~~~~i~~i~~~~~~~~~l~~~p-l~G~~~g~r~~~v~ 61 (88)
T TIGR02385 2 IVYTEQFKKDLKKIKKYIRKDLPKLLEVIELLINGKPLERRYRDHP-LTGSWKGTRECHIE 61 (88)
T ss_pred ceECHHHHHHHHHHHhhcCccHHHHHHHHHHHhcCCcCCccccCcc-ccCCcCCeEEEEEC
Confidence 678888888888886542222222 222222 2454455 5777777 345555
No 344
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=46.05 E-value=59 Score=30.48 Aligned_cols=69 Identities=9% Similarity=-0.053 Sum_probs=40.9
Q ss_pred HHHHHHHHHh-hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTK-AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~-~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++..-++.++ ..++|+|+++|+..-..+.+ .+...+++++.|...+.. .=++=|+|-.+|-+.+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~--~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 95 YCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLH--FSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEE--EEeccCccHHHHHHHHHHHhh
Confidence 4444444443 25899999999987532222 123456677777632222 234556688888877777653
No 345
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.91 E-value=22 Score=38.94 Aligned_cols=33 Identities=24% Similarity=0.255 Sum_probs=27.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.+.|-||+.+ ||||||-=|++.| .+.|+++.+
T Consensus 107 ~~~~I~VTGT~------GKTTTt~li~~iL-~~~g~~~~~ 139 (448)
T PRK03803 107 KAPVIAITGSN------GKSTVTTLVGEMA-KAAGKRVAV 139 (448)
T ss_pred CCCEEEEECCC------cHHHHHHHHHHHH-HhcCCCeEE
Confidence 35799999986 9999999999999 578986554
No 346
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=45.81 E-value=1.3e+02 Score=30.14 Aligned_cols=85 Identities=21% Similarity=0.126 Sum_probs=50.6
Q ss_pred HHhHHHHHHHHHhhcCCcEEEEecCCCC--CCHHH--------HHHHHHHHHHcCCCeEEEcC--ccccCcc--chhHHH
Q 006673 435 GCVNLARHIANTKAYGANVVVAVNMFAT--DSKAE--------LNAVRNAAMAAGAFDAVVCS--HHAHGGK--GAVDLG 500 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAINrF~t--DT~aE--------I~~v~e~c~~~Gv~~~avs~--~wa~GGe--Ga~eLA 500 (636)
-..+++++|+..+.+|.++|+...-... .+.+| +..+.++|++.|+. +.+-. .|...+. ...+-+
T Consensus 82 ~~~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~-l~lE~~~~~~~~~~~l~t~~~~ 160 (254)
T TIGR03234 82 FREGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLT-LLIEPINSFDMPGFFLTTTEQA 160 (254)
T ss_pred HHHHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEECCcccCCCChhcCHHHH
Confidence 3568999999999999998876543221 12233 45566667788996 66653 3432222 122233
Q ss_pred HHHHHHhhcCCCCCcccCCCCC
Q 006673 501 IAVQRACENVTQPLKFLYPLDV 522 (636)
Q Consensus 501 ~aVv~a~e~~~s~fk~LY~~~~ 522 (636)
..+++.+. ..+++.+||.-.
T Consensus 161 ~~li~~v~--~~~~~i~~D~~h 180 (254)
T TIGR03234 161 LAVIDDVG--RENLKLQYDLYH 180 (254)
T ss_pred HHHHHHhC--CCCEeEeeehhh
Confidence 34444443 245888887654
No 347
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=45.81 E-value=1e+02 Score=28.02 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=37.0
Q ss_pred HHHHHHHHHhh-cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 438 NLARHIANTKA-YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 438 NL~kHIeNi~~-fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
++.+.+.+... .++|+|++.|+.....+. +.+...++++..++. +..+.. +=|.|-.++-+.+++
T Consensus 93 ~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa--~~~~~v~~l~~~l~~ 160 (163)
T cd04176 93 PMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCP-FMETSA--KSKTMVNELFAEIVR 160 (163)
T ss_pred HHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCE-EEEecC--CCCCCHHHHHHHHHH
Confidence 34444444433 689999999998753322 233456667777774 444333 334565565555443
No 348
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=45.79 E-value=17 Score=37.64 Aligned_cols=33 Identities=33% Similarity=0.342 Sum_probs=27.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
|-++||+ |.-|-|||++|-+|+|+|. .-|.+++
T Consensus 3 ~~~fVtG---TDT~VGKTv~S~aL~~~l~-~~g~~~~ 35 (223)
T COG0132 3 KRFFVTG---TDTGVGKTVVSAALAQALK-QQGYSVA 35 (223)
T ss_pred ceEEEEe---CCCCccHHHHHHHHHHHHH-hCCCeeE
Confidence 4577877 5789999999999999994 6788865
No 349
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=45.79 E-value=2.2e+02 Score=26.38 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=35.3
Q ss_pred cCCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--------------EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++|++|+.|+-.-..+. +.+..++++++.+...+.. .=++-|+|-.+|-++++-
T Consensus 103 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e--~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 103 PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIE--CSALTQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEE--EeCCCCCCHHHHHHHHHh
Confidence 479999999997543211 2234567777777732433 335677888888777653
No 350
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=45.79 E-value=24 Score=39.63 Aligned_cols=32 Identities=34% Similarity=0.394 Sum_probs=26.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.++|-||+.| ||||||-=|.+.| ...|+++..
T Consensus 117 ~~vIgITGTn------GKTTTt~li~~iL-~~~g~~~~~ 148 (488)
T PRK03369 117 RRWLVVTGTN------GKTTTTSMLHAML-IAAGRRSVL 148 (488)
T ss_pred CCEEEEECCC------cHHHHHHHHHHHH-HHcCCceEE
Confidence 4689888875 9999999999999 578876543
No 351
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=45.38 E-value=15 Score=39.23 Aligned_cols=104 Identities=16% Similarity=0.111 Sum_probs=58.8
Q ss_pred HhHHHHHHHHHhh-cCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCC
Q 006673 436 CVNLARHIANTKA-YGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQP 513 (636)
Q Consensus 436 ~~NL~kHIeNi~~-fGvPvV-VAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~ 513 (636)
..|..+-|++..+ -+.++- +..|+=..+ .|-+.|.++|++.|.+ + +.. +-.- ..++.+|.. .+
T Consensus 159 ANNI~~~i~~~~~~g~~~l~GiI~N~r~~~--~e~~~v~~fa~~~g~~-i-~~~---------iPr~-~~v~~ae~~-~~ 223 (273)
T PF00142_consen 159 ANNICKAIKNFADRGGARLGGIICNSRNVD--DEEEIVEDFAERIGTP-I-IAF---------IPRS-EIVQRAELY-GK 223 (273)
T ss_dssp HHHHHHHHHHHCTTSS-EEEEEEEE-SSST--THHHHHHHHHHHHTSE-E-EEE---------E----HHHHHHHHC-TS
T ss_pred HHHHHHHHHHHhccCCCceEEEEecCCCCC--CchHHHHHHHHHcCCc-E-EEe---------cCch-HHHHHHHHc-CC
Confidence 3589999999875 556665 677865544 3455689999999996 3 222 2223 344445532 22
Q ss_pred CcccCCCCCCHHHHHHHHHH-HhCCC-ceeeCHHHHHHHHHHH
Q 006673 514 LKFLYPLDVSIKEKIDTIAR-SYGAS-GVEYSEEAEKQIEMYT 554 (636)
Q Consensus 514 fk~LY~~~~~L~eKIetIA~-IYGA~-~V~~S~~A~kqLk~ie 554 (636)
--+=|..+....+-.+.+|+ |+... .+.-.|.-.++|..+-
T Consensus 224 TVie~~P~s~~a~~yr~LA~~I~~~~~~~~P~PL~~eeL~~l~ 266 (273)
T PF00142_consen 224 TVIEAAPDSEQAQEYRELARKILENPEPVIPKPLSDEELEELL 266 (273)
T ss_dssp -CCCC-TTSHHHHHHHHHHHHHHH----B------HHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Confidence 22335667778889999999 99887 5666666677776653
No 352
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=45.36 E-value=78 Score=31.62 Aligned_cols=127 Identities=13% Similarity=0.184 Sum_probs=75.2
Q ss_pred CCcEEEEecCCCCCCH------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccC-CC--
Q 006673 450 GANVVVAVNMFATDSK------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY-PL-- 520 (636)
Q Consensus 450 GvPvVVAINrF~tDT~------aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY-~~-- 520 (636)
|..|+..++..+.+.+ .+++.++..|+++|++ ..+.+....-.+=..+|.+.+.++.++ .+..+. -+
T Consensus 23 G~~v~~l~~~~~~~~~~~~~h~~~~e~~~~~A~~lgip-l~~i~~~~~~e~~~~~l~~~l~~~~~~---g~~~vv~G~i~ 98 (194)
T cd01994 23 GHEVVALLNLTPEEGSSMMYHTVNHELLELQAEAMGIP-LIRIEISGEEEDEVEDLKELLRKLKEE---GVDAVVFGAIL 98 (194)
T ss_pred CCEEEEEEEEecCCCCcccccccCHHHHHHHHHHcCCc-EEEEeCCCCchHHHHHHHHHHHHHHHc---CCCEEEECccc
Confidence 5445444444444333 3889999999999997 444433212222235666666665433 233222 21
Q ss_pred CCCHHHHHHHHHHHhCCCcee--eCHHHHHHHHHHHhCCCCCCCeeEeecCCCCCCCCCCCCCCCC
Q 006673 521 DVSIKEKIDTIARSYGASGVE--YSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTG 584 (636)
Q Consensus 521 ~~~L~eKIetIA~IYGA~~V~--~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlSdDp~l~G~P~g 584 (636)
.+-.++.++.+|.=-|-.-+. |-...++=++++-+.||.-.=||++...+ |++.+|+.=+
T Consensus 99 sd~~~~~~e~~~~~~gl~~~~PLW~~~~~~ll~e~~~~g~~~~iv~v~~~~L----~~~~lG~~~~ 160 (194)
T cd01994 99 SEYQRTRVERVCERLGLEPLAPLWGRDQEELLREMIEAGFKAIIIKVAAEGL----DESWLGREID 160 (194)
T ss_pred cHHHHHHHHHHHHHcCCEEEecccCCCHHHHHHHHHHcCCeEEEEEeccCCC----CHHHCCCCcc
Confidence 235678888888822433322 33344556788888999988888887653 4788887655
No 353
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=45.34 E-value=55 Score=29.66 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=37.3
Q ss_pred hHHHHHHHHHh---hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 006673 437 VNLARHIANTK---AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 437 ~NL~kHIeNi~---~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
.|+.+-++.++ ..++|++|+.|+..--...+ .+.+.+++++.+.. +..+ =++=|+|-.++=+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~~i~~~~~~~~ 158 (161)
T cd04113 89 EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLL-FLET--SALTGENVEEAFLKCA 158 (161)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCE-EEEE--ECCCCCCHHHHHHHHH
Confidence 34444444443 46899999999975422222 23456677777764 3333 2355666666554443
No 354
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=45.06 E-value=51 Score=32.60 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCC-CCHHHHH----HHHHHHHHcCC
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFAT-DSKAELN----AVRNAAMAAGA 480 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~t-DT~aEI~----~v~e~c~~~Gv 480 (636)
...+|+..++++|+| +||+||+..- +.++-.+ .+++...+.|.
T Consensus 105 ~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 105 QTREHLLLARQVGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 356788999999998 7799999865 3333233 34444555553
No 355
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=45.06 E-value=23 Score=38.34 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=40.5
Q ss_pred HHHHHHHcCCCCcccccccCee----eeeccc--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc
Q 006673 31 ISEIAQELNLKPNHYDLYGKYK----AKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL 101 (636)
Q Consensus 31 I~~ia~~lgl~~~~l~~YG~~k----AKi~~~--~~~~~-~--~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~l 101 (636)
+.+|.+++|=. .+-..|... .+++.. -|+.+ . .=|.|++++|.+ |.|.||||++.=++... .+.
T Consensus 10 ~~~~~~~~g~~--~~~~~~~~~~~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G----~~GsGKTtLaL~~~~~~-~~~ 82 (321)
T TIGR02012 10 LAQIEKQFGKG--SIMRLGEKSVMDVETISTGSLSLDLALGVGGLPRGRIIEIYG----PESSGKTTLALHAIAEA-QKA 82 (321)
T ss_pred HHHHHHHcCcc--eeEECcccccccCceecCCCHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHc
Confidence 56677776642 233344321 133332 24442 2 347899999999 56999999988776665 344
Q ss_pred CCcE
Q 006673 102 DKKV 105 (636)
Q Consensus 102 g~~~ 105 (636)
|.++
T Consensus 83 g~~v 86 (321)
T TIGR02012 83 GGTA 86 (321)
T ss_pred CCcE
Confidence 4444
No 356
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=44.97 E-value=1.4e+02 Score=28.13 Aligned_cols=59 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHH----HHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 446 TKAYGANVVVAVNMFATDSKAELNAVR----NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~~v~----e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
++.+++|+++++|+....+..|.+.+. +........ +.. .=+.-|+|..++-+.+.+.+
T Consensus 131 l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~-~~~--~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 131 LKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE-VIL--FSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc-eEE--EEcCCCCCHHHHHHHHHHHh
Confidence 456899999999998877766665433 333332343 222 23456678777777766655
No 357
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=44.88 E-value=24 Score=35.99 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=25.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCcEEEEeeCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~-~aL~~~lg~~~~~~lRePS 113 (636)
-++|.++| |+|.|||.+++..+ +.+ ..-..+-++..|.+.
T Consensus 19 ~~~v~~~G----~AGTGKT~LA~a~Al~~v-~~g~~~kiii~Rp~v 59 (205)
T PF02562_consen 19 NDLVIVNG----PAGTGKTFLALAAALELV-KEGEYDKIIITRPPV 59 (205)
T ss_dssp -SEEEEE------TTSSTTHHHHHHHHHHH-HTTS-SEEEEEE-S-
T ss_pred CCeEEEEC----CCCCcHHHHHHHHHHHHH-HhCCCcEEEEEecCC
Confidence 44777777 79999999988776 344 233446788888765
No 358
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=44.88 E-value=30 Score=37.51 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=29.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
++-|||++ |-|.||||+.-.|.+.+.......-++++-+|.
T Consensus 144 ~~nilI~G----~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~ 184 (323)
T PRK13833 144 RLNIVISG----GTGSGKTTLANAVIAEIVASAPEDRLVILEDTA 184 (323)
T ss_pred CCeEEEEC----CCCCCHHHHHHHHHHHHhcCCCCceEEEecCCc
Confidence 56789998 459999999999998873223344566766554
No 359
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=44.84 E-value=2.5e+02 Score=29.61 Aligned_cols=104 Identities=14% Similarity=0.255 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC--CCCCc
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV--TQPLK 515 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~--~s~fk 515 (636)
.....++-++++|+..|..++--. +++.++.+.+.+ .|.- ..+| .-.-+|.. .++.+.+.+.++.- ..+..
T Consensus 132 e~~~~~~~~~~~gi~~I~lv~PtT--~~eri~~i~~~a--~gFI-Y~vS-~~GvTG~~-~~~~~~~~~~i~~ir~~t~~P 204 (263)
T CHL00200 132 ESDYLISVCNLYNIELILLIAPTS--SKSRIQKIARAA--PGCI-YLVS-TTGVTGLK-TELDKKLKKLIETIKKMTNKP 204 (263)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCC--CHHHHHHHHHhC--CCcE-EEEc-CCCCCCCC-ccccHHHHHHHHHHHHhcCCC
Confidence 456677788999999999998543 455555554443 2332 4445 44555543 23333333333210 11211
Q ss_pred ccCCCCCCHHHHHHHHHH--HhCCCceeeCHHHHHHHH
Q 006673 516 FLYPLDVSIKEKIDTIAR--SYGASGVEYSEEAEKQIE 551 (636)
Q Consensus 516 ~LY~~~~~L~eKIetIA~--IYGA~~V~~S~~A~kqLk 551 (636)
..-.-.-+=.| ++.+ -||||+|..-.+--+.++
T Consensus 205 i~vGFGI~~~e---~~~~~~~~GADGvVVGSalv~~i~ 239 (263)
T CHL00200 205 IILGFGISTSE---QIKQIKGWNINGIVIGSACVQILL 239 (263)
T ss_pred EEEECCcCCHH---HHHHHHhcCCCEEEECHHHHHHHH
Confidence 12122222223 4444 489999987776655543
No 360
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=44.61 E-value=25 Score=33.32 Aligned_cols=31 Identities=35% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+-|.||||++.-|+..+ ...|.+..+.-=.|
T Consensus 7 ~~GsGKTt~~~~l~~~~-~~~g~~v~ii~~D~ 37 (148)
T cd03114 7 VPGAGKSTLIDALITAL-RARGKRVAVLAIDP 37 (148)
T ss_pred CCCCcHHHHHHHHHHHH-HHCCCEEEEEEeCC
Confidence 57999999999999999 47788887766665
No 361
>PRK09354 recA recombinase A; Provisional
Probab=44.57 E-value=24 Score=38.76 Aligned_cols=70 Identities=17% Similarity=0.168 Sum_probs=42.7
Q ss_pred CHHHHHHHcCCCCcccccccC----eeeeeccc--hhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 006673 30 HISEIAQELNLKPNHYDLYGK----YKAKVLLS--VLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (636)
Q Consensus 30 ~I~~ia~~lgl~~~~l~~YG~----~kAKi~~~--~~~~~-~--~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~ 100 (636)
.|.+|-+++|=. .+-.-|. ...+++.. -|+.+ . .=|.|.+++|.+ |.|.||||++.-+.... .+
T Consensus 14 ~~~~i~~~~g~~--~~~~~~~~~~~~~~~isTGi~~LD~~LG~GGip~G~IteI~G----~~GsGKTtLal~~~~~~-~~ 86 (349)
T PRK09354 14 ALKQIEKQFGKG--SIMRLGDDAAMDVEVISTGSLALDIALGIGGLPRGRIVEIYG----PESSGKTTLALHAIAEA-QK 86 (349)
T ss_pred HHHHHHHHhCCC--CceEcccccccCCceecCCcHHHHHHhcCCCCcCCeEEEEEC----CCCCCHHHHHHHHHHHH-HH
Confidence 467777777643 2333333 12344433 24442 2 347899999999 78999999998776555 24
Q ss_pred cCCcEE
Q 006673 101 LDKKVV 106 (636)
Q Consensus 101 lg~~~~ 106 (636)
.|.+++
T Consensus 87 ~G~~~~ 92 (349)
T PRK09354 87 AGGTAA 92 (349)
T ss_pred cCCcEE
Confidence 454443
No 362
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=44.54 E-value=15 Score=32.54 Aligned_cols=77 Identities=26% Similarity=0.321 Sum_probs=45.3
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCc---EEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHH
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKK---VVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLA 157 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~---~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLla 157 (636)
|.|.|||+++-=|+..|..+++.. .+-. |.|.--.-=|.+|- .|+=+||+.==-++- . -+=.+.+-
T Consensus 6 ~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~-~~~~~~~w~gY~~q-------~vvi~DD~~~~~~~~--~-~~~~~~l~ 74 (107)
T PF00910_consen 6 PPGIGKSTLAKELAKDLLKHIGEPTKDSVYT-RNPGDKFWDGYQGQ-------PVVIIDDFGQDNDGY--N-YSDESELI 74 (107)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCCCcEEe-CCCccchhhccCCC-------cEEEEeecCcccccc--c-hHHHHHHH
Confidence 459999999999999997666433 3433 77766555555532 344455543222110 0 01245566
Q ss_pred HHHHhhhhccc
Q 006673 158 AAIDTRIFHEA 168 (636)
Q Consensus 158 A~idn~i~~~n 168 (636)
.++|+.-|+-+
T Consensus 75 ~l~s~~~~~~~ 85 (107)
T PF00910_consen 75 RLISSNPFQPN 85 (107)
T ss_pred HHHhcCCcccc
Confidence 77887777655
No 363
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=44.42 E-value=74 Score=31.10 Aligned_cols=66 Identities=11% Similarity=0.073 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCC-cEEEEecCCCCCCHHHH----HHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 440 ARHIANTKAYGA-NVVVAVNMFATDSKAEL----NAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 440 ~kHIeNi~~fGv-PvVVAINrF~tDT~aEI----~~v~e~c~~~---Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..|+..++.+++ |+||++|+..-..++++ +.+++++... ++.-+.+| ++=|+|-.+|-+.+.+.+.
T Consensus 126 ~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vS---A~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 126 SEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPIS---AQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEe---CCCCCCHHHHHHHHHHhCC
Confidence 345555666776 58899999887665554 3445555432 44312233 3446777777766665543
No 364
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=44.29 E-value=58 Score=30.75 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
.+-++.++++++|+.+.+|++...+.. .+.+++++++.|++
T Consensus 133 ~~~~~~l~~~~~~~~vV~N~~~~~~~~-~~~~~~~~~~~~~~ 173 (179)
T cd03110 133 ERAVELVRHFGIPVGVVINKYDLNDEI-AEEIEDYCEEEGIP 173 (179)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCcch-HHHHHHHHHHcCCC
Confidence 333445566799999999998876543 34577888888885
No 365
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=44.28 E-value=1.1e+02 Score=32.94 Aligned_cols=56 Identities=21% Similarity=0.136 Sum_probs=38.3
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHH-HHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKAELNAVR-NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~-e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.+.|+||++|+..-..+++++.+. +++++.+.. +.... ++=|+|-.+|-+.+.+.+
T Consensus 272 ~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~-vi~iS--Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 272 AEKPRIVVLNKIDLLDEEELAELLKELKKALGKP-VFPIS--ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCc-EEEEE--ccCCcCHHHHHHHHHHHh
Confidence 478999999998876666665554 445566765 44443 345688888888777654
No 366
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=43.97 E-value=1.4e+02 Score=26.47 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=35.0
Q ss_pred HHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 445 NTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 445 Ni~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.....++|++|++|+..-..+. ..+.+.+.+++.+..-+.+| +.=|+|-.++-+.+.+
T Consensus 100 ~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 100 QMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETS---AKTGKGIEELFLSLAK 159 (162)
T ss_pred HhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEe---CCCCCCHHHHHHHHHH
Confidence 3334489999999998754322 12445566667777533333 5556677666666544
No 367
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=43.80 E-value=13 Score=33.20 Aligned_cols=18 Identities=50% Similarity=0.711 Sum_probs=15.3
Q ss_pred CCCCCcchhHHHHHHHHh
Q 006673 81 PLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~ 98 (636)
|.|.||||++..|+..++
T Consensus 7 ~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 7 PAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CCCCCHHHHHHHHHHHhC
Confidence 469999999999988773
No 368
>PHA02096 hypothetical protein
Probab=43.76 E-value=18 Score=32.66 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=24.2
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhh--cCCcEEEEecCCC
Q 006673 426 NENVALVEAGCVNLARHIANTKA--YGANVVVAVNMFA 461 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~--fGvPvVVAINrF~ 461 (636)
.-|+..-++.++...+--.-+++ ||.|.+|+||+=+
T Consensus 39 ~~~~~~ak~~i~eylkgt~vikkrlfg~ptiv~inkps 76 (103)
T PHA02096 39 DVSLKNAKKSIEEYLKGTTVIKKRLFGPPTIVSVNKPS 76 (103)
T ss_pred hhHHHHHHHHHHHHhcccchhhhhhcCCCeEEEecCch
Confidence 34555555555555555555665 9999999999853
No 369
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=43.54 E-value=92 Score=27.84 Aligned_cols=55 Identities=18% Similarity=0.102 Sum_probs=31.1
Q ss_pred HhhcCC-cEEEEecCCCCCCHHH----HHHHHHHHHH---cCCCeEEEcCccccCccchhHHHHHH
Q 006673 446 TKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAV 503 (636)
Q Consensus 446 i~~fGv-PvVVAINrF~tDT~aE----I~~v~e~c~~---~Gv~~~avs~~wa~GGeGa~eLA~aV 503 (636)
++..+. |+|+++|+..-..+++ .+.+.+.++. .+.. +..+. ++=|+|-.+|-+.+
T Consensus 99 ~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l 161 (164)
T cd04171 99 LELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAP-IFPVS--AVTGEGIEELKEYL 161 (164)
T ss_pred HHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCc-EEEEe--CCCCcCHHHHHHHH
Confidence 445576 9999999986544433 3444555554 2343 33333 45556666655443
No 370
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=43.38 E-value=16 Score=38.14 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=59.6
Q ss_pred CeEEeeccccccccchhccccccccCCCCcce---EEEEeeehhhhhcCCCCCccCCCCCcccccc------cCHHHH-H
Q 006673 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQC---AVIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 433 (636)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a---vVlVaTvRALK~HGG~~~~~~g~pL~~~l~~------eNleaL-~ 433 (636)
||+||-..|..+. .++|++ .||..|+.--. +-.+.+.+.+.+.-.. .|-.+|+++.+ .+.++. +
T Consensus 174 ~f~iTQ~~fd~~~-~~~~~~-~~~~~g~~~pIi~GI~p~~s~~~~~~~~~~----~Gv~iP~~~~~~l~~~~~~~~~~~~ 247 (287)
T PF02219_consen 174 DFIITQPFFDAEA-FERFLD-RLREAGIDVPIIPGIMPLTSAKSARFLAKL----CGVDIPDELIERLEEAKDDPEAVRE 247 (287)
T ss_dssp SEEEEEE-SSHHH-HHHHHH-HHHHTTHTSEEEEEEE-HCCHHHHHHHHHH----HT-EEEHHHHHHHHTTTT-HHHHHH
T ss_pred CEEeccccCCHHH-HHHHHH-HHHHcCCCCcEEEEEeccCCHHHHHHHHhc----cCccCCHHHHHHHHHhcCCHHHHHH
Confidence 8999999999988 889998 89999983111 1123344544443211 13334554433 233333 4
Q ss_pred HHHhHHHHHHHHHhhcCCcE--EEEecCCCCCCHHHHHHHHHHHHHcC
Q 006673 434 AGCVNLARHIANTKAYGANV--VVAVNMFATDSKAELNAVRNAAMAAG 479 (636)
Q Consensus 434 ~G~~NL~kHIeNi~~fGvPv--VVAINrF~tDT~aEI~~v~e~c~~~G 479 (636)
.|++-....++.+...|+|= +.++|++ +.+.+.++++|
T Consensus 248 ~gi~~a~e~~~~l~~~gv~GvH~~t~n~~--------~~~~~il~~lg 287 (287)
T PF02219_consen 248 IGIEIAVELIRELLAEGVPGVHLYTMNRE--------ELVPEILENLG 287 (287)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEEEETTTS--------HHHHHHHHHTT
T ss_pred HhHHHHHHHHHHHHHcCCCeEEEEcCCCH--------HHHHHHHHHcC
Confidence 57777777788877767553 2467776 45566666554
No 371
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=43.36 E-value=19 Score=39.04 Aligned_cols=38 Identities=29% Similarity=0.282 Sum_probs=30.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR 110 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR 110 (636)
.+|-|- |=|=-|.|||++++-|++.| ...|.+..+.-|
T Consensus 50 pvIsVG--Ni~vGGtGKTP~v~~L~~~l-~~~g~~~~ilsR 87 (325)
T PRK00652 50 PVIVVG--NITVGGTGKTPVVIALAEQL-QARGLKPGVVSR 87 (325)
T ss_pred CEEEEc--CeeCCCCChHHHHHHHHHHH-HHCCCeEEEECC
Confidence 355554 34567999999999999999 578999888877
No 372
>PRK06526 transposase; Provisional
Probab=43.28 E-value=15 Score=38.19 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=40.9
Q ss_pred CHHHHHHHcCCCCc-ccccccCe-eeeeccchhhhccC---CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 30 HISEIAQELNLKPN-HYDLYGKY-KAKVLLSVLDELEG---SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 30 ~I~~ia~~lgl~~~-~l~~YG~~-kAKi~~~~~~~~~~---~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
.++..-++-+++.. .++.|=.. .-+++...+..+.. -..++-|+++| |.|.|||+++.+|+..+. +.|++
T Consensus 54 ~~~~~lk~a~~p~~~~le~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~G----p~GtGKThLa~al~~~a~-~~g~~ 128 (254)
T PRK06526 54 GGEGRIRAARFPARKSLEEFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLG----PPGTGKTHLAIGLGIRAC-QAGHR 128 (254)
T ss_pred HHHHHHHhCCCCCCCChhhccCccCCCcchHHHHHHhcCchhhcCceEEEEe----CCCCchHHHHHHHHHHHH-HCCCc
Confidence 35555566677653 44444211 11233333322211 12344567777 569999999999999884 66877
Q ss_pred EE
Q 006673 105 VV 106 (636)
Q Consensus 105 ~~ 106 (636)
+.
T Consensus 129 v~ 130 (254)
T PRK06526 129 VL 130 (254)
T ss_pred hh
Confidence 53
No 373
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=43.21 E-value=18 Score=39.03 Aligned_cols=48 Identities=42% Similarity=0.399 Sum_probs=34.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
.|+|++ =.=|.||||||.=|+-+| ++.|++..+- |=-||+==-||.+|
T Consensus 49 iI~VlS---GKGGVGKSTvt~nla~~L-a~~g~~vglLD~Dl~GPSiP~m~g~e~ 99 (300)
T KOG3022|consen 49 IILVLS---GKGGVGKSTVTVNLALAL-ASEGKKVGLLDADLCGPSIPRMMGLEG 99 (300)
T ss_pred EEEEEe---CCCCCchhHHHHHHHHHH-hcCCCcEEEEeecccCCCchhhcCCCC
Confidence 677765 468999999999999999 5788876532 34566554466554
No 374
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.13 E-value=21 Score=37.47 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
||++||- -|.||||.+--|+++|.
T Consensus 3 LiIlTGy----PgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGY----PGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecC----CCCCchHHHHHHHHHHH
Confidence 7889884 59999999999999995
No 375
>PRK04328 hypothetical protein; Provisional
Probab=43.13 E-value=33 Score=35.05 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCcE-EEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~-~aL~~~lg~~~-~~~lReP 112 (636)
|.|..+||++ |.|.||||.+.=+. .++ +-|.++ .+.+.|+
T Consensus 21 p~gs~ili~G----~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee~ 62 (249)
T PRK04328 21 PERNVVLLSG----GPGTGKSIFSQQFLWNGL--QMGEPGVYVALEEH 62 (249)
T ss_pred cCCcEEEEEc----CCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeCC
Confidence 6799999999 78999999987644 455 347775 4455443
No 376
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=43.12 E-value=13 Score=34.95 Aligned_cols=16 Identities=50% Similarity=0.628 Sum_probs=14.9
Q ss_pred CCCcchhHHHHHHHHh
Q 006673 83 GEGKSTTTVGLCQALG 98 (636)
Q Consensus 83 GEGKtTttIGL~~aL~ 98 (636)
|.||||+..-|++.|+
T Consensus 2 GsGKStvg~~lA~~L~ 17 (158)
T PF01202_consen 2 GSGKSTVGKLLAKRLG 17 (158)
T ss_dssp TSSHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhC
Confidence 8999999999999994
No 377
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=43.07 E-value=1.7e+02 Score=26.93 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=29.7
Q ss_pred cCCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
-++|+|++.|+.....+.+ .+..++++++.+...++.+. ++=|+|-.+|-+.+++.
T Consensus 104 ~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 104 PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECS--AKTKEGVREVFEMATRA 173 (175)
T ss_pred CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEec--cccCcCHHHHHHHHHHH
Confidence 3799999999976422111 12234445555543233333 34446666665555543
No 378
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=43.03 E-value=19 Score=37.80 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=66.1
Q ss_pred CeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHH
Q 006673 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI 443 (636)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHI 443 (636)
||++--+|=|..--.=.|+ +.-|.+|+|+|- ...++. |=-+-+
T Consensus 114 D~iliD~~aGl~~~~~~~~--------~~sd~~viVt~p-------------------------e~~si~----~A~~~i 156 (262)
T COG0455 114 DYILIDTGAGLSRDTLSFI--------LSSDELVIVTTP-------------------------EPTSIT----DAYKTI 156 (262)
T ss_pred CEEEEeCCCCccHHHHHHH--------HhcCcEEEEeCC-------------------------CcchHH----HHHHHH
Confidence 8888877665543332333 233888998841 222333 334457
Q ss_pred HHHhhcCCcEE---EEecCCC--CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccC
Q 006673 444 ANTKAYGANVV---VAVNMFA--TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (636)
Q Consensus 444 eNi~~fGvPvV---VAINrF~--tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY 518 (636)
++++++|.+.. |.+|+-. .|-.+=.+.+.+.+++--...++... . .|.+++..+ .+|- +|
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~---~----------~v~~a~~~g-~p~~-~~ 221 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFD---P----------EVRRALAEG-KPIV-LY 221 (262)
T ss_pred HHHHHcCCccccceEEEEecccccchhHHHHHHHHHHHhCCceeEeccC---h----------HHHHHhhcC-CcEE-Ee
Confidence 77888888863 8999985 44333334444444432211111111 1 455555431 3333 34
Q ss_pred CCCCCHHHHHHHHHH-HhC
Q 006673 519 PLDVSIKEKIDTIAR-SYG 536 (636)
Q Consensus 519 ~~~~~L~eKIetIA~-IYG 536 (636)
..+.+..+.|..||. +=+
T Consensus 222 ~p~s~as~ai~~lA~~l~~ 240 (262)
T COG0455 222 SPNSKASQAIKELAAKLAG 240 (262)
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 678888888888888 433
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=42.97 E-value=23 Score=35.88 Aligned_cols=35 Identities=31% Similarity=0.340 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
..|.+++.| +-|-||||.++|++... ...|.++.+
T Consensus 21 ~~g~v~v~~-----g~GkGKtt~a~g~a~ra-~g~G~~V~i 55 (191)
T PRK05986 21 EKGLLIVHT-----GNGKGKSTAAFGMALRA-VGHGKKVGV 55 (191)
T ss_pred cCCeEEEEC-----CCCCChHHHHHHHHHHH-HHCCCeEEE
Confidence 457777775 57999999999998776 356887654
No 380
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=42.94 E-value=27 Score=36.14 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=24.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.|-|++. .|.||||+.-.|...| ...|.++.+
T Consensus 3 vi~ivG~----~gsGKTtl~~~l~~~L-~~~G~~V~v 34 (229)
T PRK14494 3 AIGVIGF----KDSGKTTLIEKILKNL-KERGYRVAT 34 (229)
T ss_pred EEEEECC----CCChHHHHHHHHHHHH-HhCCCeEEE
Confidence 5666664 3999999999999999 466877543
No 381
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=42.87 E-value=16 Score=34.99 Aligned_cols=32 Identities=34% Similarity=0.522 Sum_probs=23.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|.|+|+ -|.||||.+--|.+-+ | +.+++||.
T Consensus 1 ~I~ieG~----~GsGKSTl~~~L~~~~----~---~~~~~Ep~ 32 (193)
T cd01673 1 VIVVEGN----IGAGKSTLAKELAEHL----G---YEVVPEPV 32 (193)
T ss_pred CEEEECC----CCCCHHHHHHHHHHHh----C---Cccccccc
Confidence 3566665 5999999998887765 3 34679986
No 382
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=42.77 E-value=13 Score=34.66 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCCCCcchhHHHHHHHH
Q 006673 81 PLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL 97 (636)
|.|.||||++.-|++.|
T Consensus 6 ~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 6 VAGSGKSTIASALAHRL 22 (163)
T ss_pred CCCCCHHHHHHHHHHhc
Confidence 68999999998888777
No 383
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=42.64 E-value=30 Score=34.11 Aligned_cols=42 Identities=29% Similarity=0.547 Sum_probs=29.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCcE-EEEeeCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKV-VTCLRQPS 113 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~-~aL~~~lg~~~-~~~lRePS 113 (636)
|.|..+||++ |.|.|||+.+.-+. .++ ...|.++ .+++-||.
T Consensus 17 p~gs~~li~G----~~GsGKT~l~~q~l~~~~-~~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 17 PKGSVVLISG----PPGSGKTTLALQFLYNGL-KNFGEKVLYVSFEEPP 60 (226)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHHH-HHHT--EEEEESSS-H
T ss_pred CCCcEEEEEe----CCCCCcHHHHHHHHHHhh-hhcCCcEEEEEecCCH
Confidence 6799999999 67999999998855 455 2337776 56667765
No 384
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=42.64 E-value=27 Score=41.54 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg 102 (636)
..++++||+ ++|.||||+...+.+++ ...|
T Consensus 337 ~~~~~iitG----gpGTGKTt~l~~i~~~~-~~~~ 366 (720)
T TIGR01448 337 QHKVVILTG----GPGTGKTTITRAIIELA-EELG 366 (720)
T ss_pred hCCeEEEEC----CCCCCHHHHHHHHHHHH-HHcC
Confidence 356899987 68999999999999999 4665
No 385
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=42.54 E-value=17 Score=40.93 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=24.8
Q ss_pred cCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 77 ITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 77 itPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
|+-|..+.|||++|.||++.| .+.|.++.
T Consensus 3 I~GT~t~vGKT~v~~~L~~~l-~~~G~~v~ 31 (475)
T TIGR00313 3 VVGTTSSAGKSTLTAGLCRIL-ARRGYRVA 31 (475)
T ss_pred EeeCCCCCCHHHHHHHHHHHH-HhCCCeEE
Confidence 345778999999999999999 57898865
No 386
>PLN02881 tetrahydrofolylpolyglutamate synthase
Probab=42.47 E-value=1.4e+02 Score=34.84 Aligned_cols=85 Identities=14% Similarity=0.218 Sum_probs=55.3
Q ss_pred CeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHH
Q 006673 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHI 443 (636)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHI 443 (636)
||+|=|+|-|--+-+-.++ ..|+++|| ++| ++ +-++.|-..++...+|=
T Consensus 159 D~aVlEvGlgGr~DaTnvi--------~~p~v~vI-TnI-g~---------------------DH~~~LG~Tle~IA~~K 207 (530)
T PLN02881 159 DVAILEVGLGGRLDATNVV--------QKPVVCGI-TSL-GY---------------------DHMEILGDTLGKIAGEK 207 (530)
T ss_pred CEEEEEecCCCCchhhhcc--------CCCCEEEE-ccc-cH---------------------HHHHhhcCCHHHHHHHH
Confidence 9999999987665444321 14776655 333 22 22333433466677777
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEE
Q 006673 444 ANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVV 485 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~av 485 (636)
..|-+-|+|+|.+- .+ ++-.+.+++.|++.|+. ..+
T Consensus 208 agI~k~g~p~vt~~----q~-~ea~~vl~~~A~e~~a~-l~~ 243 (530)
T PLN02881 208 AGIFKPGVPAFTVP----QP-DEAMRVLEERASELGVP-LQV 243 (530)
T ss_pred HHHHhcCCCEEEeC----CC-hHHHHHHHHHHHHhCCc-EEE
Confidence 77788999998863 22 44567889999999997 444
No 387
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=42.36 E-value=38 Score=35.43 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHH-HHHHHHhhhcCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTV-GLCQALGAFLDK 103 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttI-GL~~aL~~~lg~ 103 (636)
|.|.++.||+. .|+||||... .|..++.++++.
T Consensus 19 p~g~~~~vtGv----SGsGKStL~~~~l~~~~~~~~~~ 52 (261)
T cd03271 19 PLGVLTCVTGV----SGSGKSSLINDTLYPALARRLHL 52 (261)
T ss_pred cCCcEEEEECC----CCCchHHHHHHHHHHHHHHHhcc
Confidence 78999999996 7999999985 667777544443
No 388
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=42.18 E-value=52 Score=33.61 Aligned_cols=42 Identities=10% Similarity=0.029 Sum_probs=26.5
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 440 ARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
.++++.++.+++|+++++|+.......--+.+.+..+..|..
T Consensus 106 ~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~ 147 (268)
T cd04170 106 EKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGRP 147 (268)
T ss_pred HHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCCC
Confidence 345566778999999999998765432222333443445664
No 389
>PRK03670 competence damage-inducible protein A; Provisional
Probab=42.17 E-value=2.9e+02 Score=29.04 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=44.3
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCH
Q 006673 445 NTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSI 524 (636)
Q Consensus 445 Ni~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L 524 (636)
-++.+|+.+.-. .-..|.+++|....+.+.+... ++++++ ||-|. .+ +|.+.
T Consensus 28 ~L~~~G~~v~~~--~iV~Dd~~~I~~~l~~a~~~~~-DlVItt----GGlGp---------------t~------dD~T~ 79 (252)
T PRK03670 28 KLTEKGYWVRRI--TTVGDDVEEIKSVVLEILSRKP-EVLVIS----GGLGP---------------TH------DDVTM 79 (252)
T ss_pred HHHHCCCEEEEE--EEcCCCHHHHHHHHHHHhhCCC-CEEEEC----CCccC---------------CC------CCchH
Confidence 367788886422 1247778888766555544444 466665 77764 11 11111
Q ss_pred HHHHHHHHHHhCCCceeeCHHHHHHHHHH
Q 006673 525 KEKIDTIARSYGASGVEYSEEAEKQIEMY 553 (636)
Q Consensus 525 ~eKIetIA~IYGA~~V~~S~~A~kqLk~i 553 (636)
+.||+. ....+.+.++|.+.|+++
T Consensus 80 ----eava~a-~g~~l~~~~e~~~~i~~~ 103 (252)
T PRK03670 80 ----LAVAEA-LGRELVLCEDCLERIKEF 103 (252)
T ss_pred ----HHHHHH-hCCCCcCCHHHHHHHHHH
Confidence 244444 346678888888888754
No 390
>PF13173 AAA_14: AAA domain
Probab=42.08 E-value=25 Score=31.85 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=21.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++|.++++| |.|.||||+.-=+++-+
T Consensus 1 n~~~~~l~G----~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 1 NRKIIILTG----PRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CCCeEEEEC----CCCCCHHHHHHHHHHHh
Confidence 467899988 68999999988877776
No 391
>PRK06217 hypothetical protein; Validated
Probab=41.90 E-value=17 Score=34.88 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=18.2
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|+|+|. .|.||||++--|++.|
T Consensus 4 I~i~G~----~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGA----SGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECC----CCCCHHHHHHHHHHHc
Confidence 777774 5999999998888776
No 392
>PRK09183 transposase/IS protein; Provisional
Probab=41.86 E-value=34 Score=35.40 Aligned_cols=35 Identities=26% Similarity=0.236 Sum_probs=26.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
..|.-|+++| |.|.||||++.+|+..+. .-|+++.
T Consensus 100 ~~~~~v~l~G----p~GtGKThLa~al~~~a~-~~G~~v~ 134 (259)
T PRK09183 100 ERNENIVLLG----PSGVGKTHLAIALGYEAV-RAGIKVR 134 (259)
T ss_pred hcCCeEEEEe----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 3466777777 669999999999988874 5676653
No 393
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=41.58 E-value=76 Score=28.83 Aligned_cols=56 Identities=9% Similarity=-0.022 Sum_probs=36.2
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
.-++|++|+.|+-.-.+..+ .+.+.++|.+.++. +. ++=++-|+|-.+|-+.+++.
T Consensus 106 ~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 106 DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLS-FI--ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCeEEEEEECccccccccCCHHHHHHHHHHcCCE-EE--EEECCCCCCHHHHHHHHHHH
Confidence 34799999999987543322 34556677776764 33 33456678887777776543
No 394
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=41.54 E-value=1e+02 Score=28.11 Aligned_cols=66 Identities=9% Similarity=0.070 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
+...++......++|++|+.|+-.-.... ..+.+++++++.+...+..+. ++=|+|-.++-+.+.+
T Consensus 96 ~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~~~~l~~ 163 (165)
T cd01864 96 HWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETS--AKESQNVEEAFLLMAT 163 (165)
T ss_pred HHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEE--CCCCCCHHHHHHHHHH
Confidence 45555555456789999999986643222 345667788877764333322 2336776666665543
No 395
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=41.53 E-value=16 Score=37.21 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.9
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHhhhcC
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQALGAFLD 102 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL~~~lg 102 (636)
||++| |.|.||||++..++..| ..+|
T Consensus 45 vll~G----ppGtGKTtlA~~ia~~l-~~~~ 70 (261)
T TIGR02881 45 MIFKG----NPGTGKTTVARILGKLF-KEMN 70 (261)
T ss_pred EEEEc----CCCCCHHHHHHHHHHHH-HhcC
Confidence 55555 78999999999999988 3554
No 396
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=41.41 E-value=25 Score=40.74 Aligned_cols=39 Identities=26% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
+++++|++|+.. |+||||.+-.|.+.|. ..|. .+..|+.
T Consensus 458 ~~~~~i~~~G~~----gsGKst~a~~l~~~l~-~~~~-~~~~l~~ 496 (632)
T PRK05506 458 QKPATVWFTGLS----GSGKSTIANLVERRLH-ALGR-HTYLLDG 496 (632)
T ss_pred CCcEEEEecCCC----CchHHHHHHHHHHHHH-HcCC-CEEEEcC
Confidence 469999999984 9999999999999984 3343 3455543
No 397
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=41.40 E-value=22 Score=37.84 Aligned_cols=103 Identities=17% Similarity=0.106 Sum_probs=65.5
Q ss_pred HHHHHHHHHhh-cCCcE-EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCc
Q 006673 438 NLARHIANTKA-YGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (636)
Q Consensus 438 NL~kHIeNi~~-fGvPv-VVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk 515 (636)
|..|-|.+..+ -|+-. =+.-|+=..| .|.++|.++|++.|-. + +..+.. ..++..+|-.... -
T Consensus 162 NI~kgi~k~a~~~~~rLgGiIcNsr~~~--~e~e~v~~fa~~igt~-l-i~~vPr----------~~ivq~aE~~~kT-v 226 (278)
T COG1348 162 NIAKGIRKYAKTGGVRLGGIICNSRSVD--RERELVEAFAERLGTQ-L-IHFVPR----------DNIVQKAELNGKT-V 226 (278)
T ss_pred HHHHHHHHHhhcCCcceeeEEecCCCcc--cHHHHHHHHHHHhCCc-e-Eeeccc----------hHHHHHHHHcCcc-h
Confidence 66666666655 33321 2345766544 5666799999999986 3 333322 2455555532222 1
Q ss_pred ccCCCCCCHHHHHHHHHH-HhCCCc-eeeCHHHHHHHHHHHh
Q 006673 516 FLYPLDVSIKEKIDTIAR-SYGASG-VEYSEEAEKQIEMYTG 555 (636)
Q Consensus 516 ~LY~~~~~L~eKIetIA~-IYGA~~-V~~S~~A~kqLk~ie~ 555 (636)
.=|..+...-+--+.+|+ ||.-++ |..+|...++|..+-.
T Consensus 227 ie~~P~s~~a~~yr~LA~~I~~n~~~vvp~pl~~eele~~~~ 268 (278)
T COG1348 227 IEYAPDSNQAEEYRELAKKILENEKGVVPTPLSDEELEELLL 268 (278)
T ss_pred hhhCcchhHHHHHHHHHHHHHhCCCCccCCCCCHHHHHHHHH
Confidence 224456666688899999 998866 9999999888877654
No 398
>PRK12736 elongation factor Tu; Reviewed
Probab=41.40 E-value=1.2e+02 Score=33.36 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=29.0
Q ss_pred HHHHHHHHhhcCCc-EEEEecCCCCCCHHH----HH-HHHHHHHHcCC
Q 006673 439 LARHIANTKAYGAN-VVVAVNMFATDSKAE----LN-AVRNAAMAAGA 480 (636)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAINrF~tDT~aE----I~-~v~e~c~~~Gv 480 (636)
-..|+..++.+|+| .||++|+..--+++| +. .+++++++.+.
T Consensus 116 t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~ 163 (394)
T PRK12736 116 TREHILLARQVGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDF 163 (394)
T ss_pred HHHHHHHHHHcCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCC
Confidence 45788889999999 579999987533333 22 45566666663
No 399
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=40.91 E-value=1.4e+02 Score=33.58 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=73.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--eEEEc-Cccc--cCccchhHHHHHHHHHhhcCCC
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVC-SHHA--HGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~--~~avs-~~wa--~GGeGa~eLA~aVv~a~e~~~s 512 (636)
|+++..+-+++||.|||| +..|...+..-+.+.+.++|++ +.++- ..++ .|=+-+.+--+++-.++=++..
T Consensus 228 Ny~~ia~lAk~yg~~Vvv----~s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALkgD~ 303 (389)
T TIGR00381 228 DYEKIANAAKKYGHVVLS----WTIMDINMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLKGDT 303 (389)
T ss_pred hHHHHHHHHHHhCCeEEE----EcCCcHHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhcCCc
Confidence 888999999999999998 4557788888887778899998 77663 3332 6666666666666555433322
Q ss_pred CCcccCCCC-------------------------CCHHHHHHHHHH-HhCCCcee-eCHHHHHHHHHHHh
Q 006673 513 PLKFLYPLD-------------------------VSIKEKIDTIAR-SYGASGVE-YSEEAEKQIEMYTG 555 (636)
Q Consensus 513 ~fk~LY~~~-------------------------~~L~eKIetIA~-IYGA~~V~-~S~~A~kqLk~ie~ 555 (636)
.|. ||.- -+++|=+...+- +=|++=+. ..|.+-+.++++-+
T Consensus 304 ~L~--~Pii~~~~~~w~~kEa~~~~~~wG~~~~Rg~lwE~~ta~~~~~aG~di~~m~HP~sv~~~k~~~~ 371 (389)
T TIGR00381 304 DLN--MPMSSGTTNAWGAREAWMVDSEWGPREYRGPLWEIITGLTMMLAGVDLFMMLHPVSVAVLKEIGN 371 (389)
T ss_pred CCC--CCeeccchhhhhheeeccCCCCCCChHHhchhhhHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHH
Confidence 222 2211 245555555555 66666544 46777777777654
No 400
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=40.79 E-value=22 Score=38.74 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
..++.|||++ |-|.||||+.-.|.+.+. . .. .++++-+|
T Consensus 160 ~~~~nilI~G----~tGSGKTTll~aLl~~i~-~-~~-rivtiEd~ 198 (344)
T PRK13851 160 VGRLTMLLCG----PTGSGKTTMSKTLISAIP-P-QE-RLITIEDT 198 (344)
T ss_pred HcCCeEEEEC----CCCccHHHHHHHHHcccC-C-CC-CEEEECCC
Confidence 4578899998 459999999999988884 2 33 35555554
No 401
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=40.70 E-value=1.4e+02 Score=28.48 Aligned_cols=57 Identities=12% Similarity=-0.021 Sum_probs=36.7
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+|++.|+..--.+.+ .+...+++.+.++. +..+.. +=|+|-.++-+.+++.+.
T Consensus 105 ~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~SA--k~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCE-FIEASA--KTNVNVERAFYTLVRALR 163 (190)
T ss_pred CCCCEEEEEEChhccccCccCHHHHHHHHHHhCCE-EEEecC--CCCCCHHHHHHHHHHHHH
Confidence 5799999999976422222 22345667777875 444333 337888888888877664
No 402
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=40.60 E-value=84 Score=28.21 Aligned_cols=57 Identities=9% Similarity=-0.060 Sum_probs=29.6
Q ss_pred hhcCCcEEEEecCCCCCCHHHHHHHHHHHH--HcCCCeEEEcCccccCccchhHHHHHH
Q 006673 447 KAYGANVVVAVNMFATDSKAELNAVRNAAM--AAGAFDAVVCSHHAHGGKGAVDLGIAV 503 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aEI~~v~e~c~--~~Gv~~~avs~~wa~GGeGa~eLA~aV 503 (636)
...++|+++++|+..-..+.+.+.+.+... +..-..+-+-+.=++-|+|-.++-+.+
T Consensus 101 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 101 KHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred ccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHH
Confidence 346899999999987533222222222221 101111212233367788877776654
No 403
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=40.55 E-value=33 Score=34.81 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=32.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE-EEEeeCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQPS 113 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~-~~~lRePS 113 (636)
|.|+.+||++ +.|.|||+.+.-..-... +-|.+. .++++|+.
T Consensus 21 p~g~~~lI~G----~pGsGKT~f~~qfl~~~~-~~ge~vlyvs~~e~~ 63 (260)
T COG0467 21 PRGSVVLITG----PPGTGKTIFALQFLYEGA-REGEPVLYVSTEESP 63 (260)
T ss_pred cCCcEEEEEc----CCCCcHHHHHHHHHHHHH-hcCCcEEEEEecCCH
Confidence 7799999999 579999999987766663 458776 46777753
No 404
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=40.54 E-value=17 Score=44.24 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=29.6
Q ss_pred cchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 57 ~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
..+++++....+.|++|++| |+|-||||...-+..
T Consensus 25 ~rL~~~L~~~~~~RL~li~A----PAGfGKttl~aq~~~ 59 (894)
T COG2909 25 PRLLDRLRRANDYRLILISA----PAGFGKTTLLAQWRE 59 (894)
T ss_pred HHHHHHHhcCCCceEEEEeC----CCCCcHHHHHHHHHH
Confidence 45777887778899999987 999999999887755
No 405
>COG2866 Predicted carboxypeptidase [Amino acid transport and metabolism]
Probab=40.50 E-value=16 Score=40.35 Aligned_cols=94 Identities=16% Similarity=0.040 Sum_probs=63.8
Q ss_pred CccccccCCCCCCceeeecCccccccccchhhH------HHHHHhHHHHHHHh-hhhccccCChhHhhhccCCCCCcCCc
Q 006673 116 PTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHA------ITAANNLLAAAIDT-RIFHEASQSDKALFNRLCPPNKEGER 188 (636)
Q Consensus 116 P~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hA------ItaA~NLlaA~idn-~i~~~n~~~~~~~~~~l~~~~~~~~r 188 (636)
+-++.+.++.+. ..+++|+|..|| ...+-|||.+.+|+ ...+. . .......+||
T Consensus 135 ~~~i~~~~~~~~---------~~~i~~~~~~H~~g~~~~~~~~~~li~r~~~~~~~~~~--l-ld~~~~~vvp------- 195 (374)
T COG2866 135 DPLITFPESNPE---------HKTILITAGQHARGEKMVEWFLYNLILRYLDPDVQVRK--L-LDRADLHVVP------- 195 (374)
T ss_pred cceeeecCCCCc---------cceeeEecccccCccHHHHHHHHHHHHHhcCccchhhh--h-hccccEEEec-------
Confidence 666666665543 789999999996 78899999999998 11111 1 1112334677
Q ss_pred chhHHHHHHHHhhcCCCCCCCCCCHH------HHhhhccCCCCCCceeeeecccccccccce
Q 006673 189 SFSNIMFRRLKKLGISKTKPEDLTPE------EINRFARLDIDPASITWRRVMDVNDRFLRK 244 (636)
Q Consensus 189 ~~~~~~~~rl~~~~i~~~~p~~l~~~------~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~ 244 (636)
..|||-...- +-..+++..|+|.-..|+=++-+||+++.-
T Consensus 196 ----------------~~NpDG~~~~~lr~na~~~dLnr~~~~~~~~~~~~~~~~~~~~~~~ 241 (374)
T COG2866 196 ----------------NVNPDGSDLGNLRTNANGVDLNRNFIAPNEEEGKEVYRWNDAALEF 241 (374)
T ss_pred ----------------ccCCchhhhcccccccCccchhhhccCCCcccchHHHhhhhhhccc
Confidence 3455544322 333444556999999999999999999883
No 406
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=40.27 E-value=41 Score=32.42 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=24.3
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
.++|||- +|.||||+-.-|.+ . ..-|.+..+..-|
T Consensus 2 v~ii~Gf----LGsGKTTli~~ll~-~-~~~~~~~~vI~ne 36 (178)
T PF02492_consen 2 VIIITGF----LGSGKTTLINHLLK-R-NRQGERVAVIVNE 36 (178)
T ss_dssp EEEEEES----TTSSHHHHHHHHHH-H-HTTTS-EEEEECS
T ss_pred EEEEEcC----CCCCHHHHHHHHHH-H-hcCCceeEEEEcc
Confidence 4667774 89999999888887 3 3557776665544
No 407
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=40.16 E-value=2.7e+02 Score=29.37 Aligned_cols=95 Identities=18% Similarity=0.194 Sum_probs=63.0
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH-------HHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVR-------NAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 511 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~-------e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~ 511 (636)
|++-|+-.++|||+| |+.+|-.|+.+.+ ++|+++|...+.+|+.+-+= .-.++++.|-.+.+.
T Consensus 43 l~eki~la~~~~V~v------~~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i--~~~~~~rlI~~~~~~-- 112 (237)
T TIGR03849 43 VKEKIEMYKDYGIKV------YPGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEI--SLEERCNLIERAKDN-- 112 (237)
T ss_pred HHHHHHHHHHcCCeE------eCCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCC--CHHHHHHHHHHHHhC--
Confidence 777888999999998 4678888876543 48999999877788765442 223444444444322
Q ss_pred CCCcccC---------CCCCCHHHHHHHHHH--HhCCCceeeCH
Q 006673 512 QPLKFLY---------PLDVSIKEKIDTIAR--SYGASGVEYSE 544 (636)
Q Consensus 512 s~fk~LY---------~~~~~L~eKIetIA~--IYGA~~V~~S~ 544 (636)
.|+.+. +...+..+.|+.+.+ --||+.|....
T Consensus 113 -g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEa 155 (237)
T TIGR03849 113 -GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEG 155 (237)
T ss_pred -CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 233332 224678899999877 68887775543
No 408
>PRK01184 hypothetical protein; Provisional
Probab=40.12 E-value=21 Score=34.02 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=22.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQ 111 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRe 111 (636)
++|++|| |-|.||||++. ++ .++|...+.+ +|+
T Consensus 2 ~~i~l~G----~~GsGKsT~a~-~~----~~~g~~~i~~~d~lr~ 37 (184)
T PRK01184 2 KIIGVVG----MPGSGKGEFSK-IA----REMGIPVVVMGDVIRE 37 (184)
T ss_pred cEEEEEC----CCCCCHHHHHH-HH----HHcCCcEEEhhHHHHH
Confidence 3678888 46999999875 43 3556666654 565
No 409
>PRK07952 DNA replication protein DnaC; Validated
Probab=40.08 E-value=24 Score=36.61 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=24.3
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
-+++++ |.|.|||+++.+++..|. +.|++++
T Consensus 101 ~~~l~G----~~GtGKThLa~aia~~l~-~~g~~v~ 131 (244)
T PRK07952 101 SFIFSG----KPGTGKNHLAAAICNELL-LRGKSVL 131 (244)
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 566665 569999999999999994 6676654
No 410
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=40.08 E-value=59 Score=33.93 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCcEEEEecCCCCC
Q 006673 440 ARHIANTKAYGANVVVAVNMFATD 463 (636)
Q Consensus 440 ~kHIeNi~~fGvPvVVAINrF~tD 463 (636)
.++++.++++|+|++|+||+....
T Consensus 106 ~~~~~~~~~~~~p~ivviNK~D~~ 129 (270)
T cd01886 106 ETVWRQADRYNVPRIAFVNKMDRT 129 (270)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCC
Confidence 577888889999999999998764
No 411
>PRK00093 GTP-binding protein Der; Reviewed
Probab=40.02 E-value=1.2e+02 Score=33.15 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=39.9
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~-----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.-+.+.|.|+||++|++.-..+++.+.+.+..++. .++ +..+. ++=|.|-.+|-+.+.+..+
T Consensus 277 ~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-i~~~S--A~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 277 AGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAP-IVFIS--ALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred HHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCC-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 334556899999999999877666666666555421 233 33222 3456777777766666554
No 412
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=39.72 E-value=16 Score=37.60 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCC
Q 006673 80 TPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQ 114 (636)
Q Consensus 80 TP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSl 114 (636)
-|+|.|||.|...|+.+| |+..++-==.|++
T Consensus 39 GpagtGKtetik~La~~l----G~~~~vfnc~~~~ 69 (231)
T PF12774_consen 39 GPAGTGKTETIKDLARAL----GRFVVVFNCSEQM 69 (231)
T ss_dssp SSTTSSHHHHHHHHHHCT----T--EEEEETTSSS
T ss_pred CCCCCCchhHHHHHHHHh----CCeEEEecccccc
Confidence 489999999999998877 5565543333333
No 413
>PRK14737 gmk guanylate kinase; Provisional
Probab=39.70 E-value=28 Score=34.22 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=32.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
..+++|++++ |.|.||||+.--|.+-+ ..+....-.+=|.|-.|-
T Consensus 2 ~~~~~ivl~G----psG~GK~tl~~~l~~~~-~~~~~~v~~TTR~~r~gE 46 (186)
T PRK14737 2 ASPKLFIISS----VAGGGKSTIIQALLEEH-PDFLFSISCTTRAPRPGD 46 (186)
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHhcC-CccccccCccCCCCCCCC
Confidence 3588999998 78999999998887655 233333345667777663
No 414
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=39.66 E-value=1.3e+02 Score=29.90 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=35.7
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKAEL--NAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI--~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
-++|+|++.|+-.-..+.|+ +...++|.+. +.. +..+. |+=|+|-.++=+.+++.+
T Consensus 104 ~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~-~~etS--Aktg~gV~e~F~~l~~~~ 162 (202)
T cd04120 104 EDAELLLVGNKLDCETDREISRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHhcCCCE-EEEec--CCCCCCHHHHHHHHHHHH
Confidence 47999999999765433433 3456677664 654 33332 777888777666665544
No 415
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=39.57 E-value=36 Score=41.27 Aligned_cols=55 Identities=35% Similarity=0.501 Sum_probs=41.0
Q ss_pred ccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEE
Q 006673 376 IGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVV 455 (636)
Q Consensus 376 lGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVV 455 (636)
-|-|.|-|.+.|-++|. |.++||.-| |||=-++ -++ -|.++|.-..|.||
T Consensus 548 pghEsFtnlRsrgsslC-~~aIlvvdI----mhGlepq--------------tiE-----------Si~lLR~rktpFiv 597 (1064)
T KOG1144|consen 548 PGHESFTNLRSRGSSLC-DLAILVVDI----MHGLEPQ--------------TIE-----------SINLLRMRKTPFIV 597 (1064)
T ss_pred CCchhhhhhhhcccccc-ceEEEEeeh----hccCCcc--------------hhH-----------HHHHHHhcCCCeEE
Confidence 46899999999999996 667777766 7862221 122 26677888999999
Q ss_pred EecCC
Q 006673 456 AVNMF 460 (636)
Q Consensus 456 AINrF 460 (636)
|+|+-
T Consensus 598 ALNKi 602 (1064)
T KOG1144|consen 598 ALNKI 602 (1064)
T ss_pred eehhh
Confidence 99973
No 416
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=39.52 E-value=14 Score=37.01 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=13.6
Q ss_pred CCCCCcchhHHHHHHHH
Q 006673 81 PLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL 97 (636)
+-|.||||++..|+-=+
T Consensus 7 tiGCGKTTva~aL~~LF 23 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLF 23 (168)
T ss_pred CCCcCHHHHHHHHHHHc
Confidence 35999999998886555
No 417
>PLN02772 guanylate kinase
Probab=39.45 E-value=25 Score=39.44 Aligned_cols=48 Identities=25% Similarity=0.317 Sum_probs=36.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
+.|+|++++ |.|.||||+.--|.+-+..+++.-.-.+=|.|-.|.+-|
T Consensus 134 ~~k~iVlsG----PSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG 181 (398)
T PLN02772 134 AEKPIVISG----PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDG 181 (398)
T ss_pred CCcEEEEEC----CCCCCHHHHHHHHhhhccccccccccccCCCCcccccCC
Confidence 578999998 899999998887766553346666666789888875543
No 418
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=39.43 E-value=31 Score=32.68 Aligned_cols=27 Identities=37% Similarity=0.650 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.+++++| |.|.||||.+.-|+-++
T Consensus 30 ~~g~l~~i~g----~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 30 PRGELTLIAG----PPGSGKTTLALQLAAAL 56 (193)
T ss_dssp -TTSEEEEEE----CSTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 4588999998 67999999999998888
No 419
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.42 E-value=91 Score=33.56 Aligned_cols=50 Identities=12% Similarity=0.045 Sum_probs=37.6
Q ss_pred HhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 006673 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs 486 (636)
|....+.|++++++|+++.|..- ...++.+|++.+.+++.++|+..+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~v-v~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAV-IHRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEE-eecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 45556667788889998776442 355688999999999999999855444
No 420
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=39.36 E-value=44 Score=36.84 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=31.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+--+||+.++| |.|||||--=|+.-| ..-|++++++
T Consensus 138 ~p~Vil~vGVN----G~GKTTTIaKLA~~l-~~~g~~Vlla 173 (340)
T COG0552 138 KPFVILFVGVN----GVGKTTTIAKLAKYL-KQQGKSVLLA 173 (340)
T ss_pred CcEEEEEEecC----CCchHhHHHHHHHHH-HHCCCeEEEE
Confidence 35699999998 889999988899999 5789998875
No 421
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=39.22 E-value=1.4e+02 Score=29.70 Aligned_cols=94 Identities=17% Similarity=0.247 Sum_probs=54.1
Q ss_pred hhcCC-cEEEEecC---------CCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHH--HHHHHHHhhcCCCCC
Q 006673 447 KAYGA-NVVVAVNM---------FATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL--GIAVQRACENVTQPL 514 (636)
Q Consensus 447 ~~fGv-PvVVAINr---------F~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eL--A~aVv~a~e~~~s~f 514 (636)
+.||- +++++|+. +...++.+...+.+...+.|+..+.+.+...+|-..+.++ -+++.+. .+.
T Consensus 117 ~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~-----~~i 191 (234)
T cd04732 117 KEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAA-----TGI 191 (234)
T ss_pred HHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHh-----cCC
Confidence 35776 88888872 1122333333344455678998777888888877666543 3444332 234
Q ss_pred cccCCCCCCHHHHHHHHHHHhCCCceeeCHHH
Q 006673 515 KFLYPLDVSIKEKIDTIARSYGASGVEYSEEA 546 (636)
Q Consensus 515 k~LY~~~~~L~eKIetIA~IYGA~~V~~S~~A 546 (636)
..++.-.-.=.+.++++.+ +|+++|......
T Consensus 192 pvi~~GGi~~~~di~~~~~-~Ga~gv~vg~~~ 222 (234)
T cd04732 192 PVIASGGVSSLDDIKALKE-LGVAGVIVGKAL 222 (234)
T ss_pred CEEEecCCCCHHHHHHHHH-CCCCEEEEeHHH
Confidence 4555555444455666544 488888765544
No 422
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=39.16 E-value=85 Score=28.81 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=26.9
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
.+.|+++++|+-.--.+++++...+++++.+..
T Consensus 41 ~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ 73 (141)
T cd01857 41 PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIV 73 (141)
T ss_pred CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCe
Confidence 478999999998876677887777888877764
No 423
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=38.97 E-value=34 Score=37.65 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.+.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 113 ~~~vI~VTGT~------GKTTTt~ll~~iL-~~~g~~~~ 144 (460)
T PRK01390 113 DAPFIAITGTN------GKSTTTALIAHIL-REAGRDVQ 144 (460)
T ss_pred CCCEEEEeCCC------cHHHHHHHHHHHH-HhcCCCeE
Confidence 46899999986 9999999999999 57888764
No 424
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=38.75 E-value=60 Score=35.74 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=19.5
Q ss_pred HHHHHHHHhhcCCc-EEEEecCCCCC
Q 006673 439 LARHIANTKAYGAN-VVVAVNMFATD 463 (636)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAINrF~tD 463 (636)
-.+|+..++.+|+| +||++|+....
T Consensus 121 t~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 121 TRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred cHHHHHHHHHcCCCcEEEEEEecccc
Confidence 45678888888886 78899998753
No 425
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=38.73 E-value=47 Score=38.21 Aligned_cols=80 Identities=26% Similarity=0.307 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHH-HHHHHhhhcC--
Q 006673 26 VEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVG-LCQALGAFLD-- 102 (636)
Q Consensus 26 ~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIG-L~~aL~~~lg-- 102 (636)
-.+..+.+|++.+|..-...+.|= |+ ++++ .- +.|-++.|++ +.|.||||.-.= +++++. +-.
T Consensus 375 ~lp~e~~~IleSFGv~~r~ieryv-lr---~vNL----~i-kpGdvvaVvG----qSGaGKttllRmi~G~~~~-~~ee~ 440 (593)
T COG2401 375 GLPNEFQDILESFGVRQRVIERYV-LR---NLNL----EI-KPGDVVAVVG----QSGAGKTTLLRMILGAQKG-RGEEK 440 (593)
T ss_pred cCChHHHHHHHHhcchheeeeeee-ee---ceee----Ee-cCCCeEEEEe----cCCCCcchHHHHHHHHhhc-ccccc
Confidence 356779999999999988888873 22 2221 21 4588999987 579999997543 334442 222
Q ss_pred -----------CcEEEEeeCCCCCCccc
Q 006673 103 -----------KKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 103 -----------~~~~~~lRePSlGP~FG 119 (636)
++++++++--+.-|.||
T Consensus 441 y~p~sg~v~vp~nt~~a~iPge~Ep~f~ 468 (593)
T COG2401 441 YRPDSGKVEVPKNTVSALIPGEYEPEFG 468 (593)
T ss_pred cCCCCCceeccccchhhccCcccccccC
Confidence 46788888888888887
No 426
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=38.67 E-value=97 Score=33.19 Aligned_cols=52 Identities=13% Similarity=-0.013 Sum_probs=41.4
Q ss_pred hHHHHHHHHHhhcCCcEEE--EecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc
Q 006673 437 VNLARHIANTKAYGANVVV--AVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH 488 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVV--AINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~ 488 (636)
+...+-|+++++.|+++.+ .+.+-..|+.++++.+.+++.+.|+....+...
T Consensus 214 ~~~~~ai~~L~~~Gi~v~~q~vLl~gvNd~~~~l~~l~~~l~~~gv~pyyl~~~ 267 (321)
T TIGR03822 214 AEARAACARLIDAGIPMVSQSVLLRGVNDDPETLAALMRAFVECRIKPYYLHHL 267 (321)
T ss_pred HHHHHHHHHHHHcCCEEEEEeeEeCCCCCCHHHHHHHHHHHHhcCCeeEEEEec
Confidence 4566778888999999866 577778899999999999999999964544433
No 427
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=38.56 E-value=2.6e+02 Score=28.74 Aligned_cols=67 Identities=15% Similarity=0.076 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc-----ccCccch-----hHHHHHHHHHhh
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH-----AHGGKGA-----VDLGIAVQRACE 508 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~w-----a~GGeGa-----~eLA~aVv~a~e 508 (636)
+++.+..++..+.|++ +|-+.+| .+|+....+.+++.+ ..+-++=+. .++|.|+ .++..++++++.
T Consensus 61 ~~~~~~~~~~~~~p~~--vqi~g~~-~~~~~~aa~~~~~~~-~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr 136 (233)
T cd02911 61 IEGEIKALKDSNVLVG--VNVRSSS-LEPLLNAAALVAKNA-AILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALK 136 (233)
T ss_pred HHHHHHHhhccCCeEE--EEecCCC-HHHHHHHHHHHhhcC-CEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHH
Confidence 4445555666676555 5667555 677776667776543 334443332 2557788 677777777775
Q ss_pred c
Q 006673 509 N 509 (636)
Q Consensus 509 ~ 509 (636)
+
T Consensus 137 ~ 137 (233)
T cd02911 137 E 137 (233)
T ss_pred h
Confidence 3
No 428
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=38.42 E-value=4.2e+02 Score=26.51 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=65.6
Q ss_pred HHhHHHHHHHHHhhcCCcEEEEe-cCCC-CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC-
Q 006673 435 GCVNLARHIANTKAYGANVVVAV-NMFA-TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT- 511 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAI-NrF~-tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~- 511 (636)
-+.+....|+.+++.|+++.+.+ .-|. ..+.+++..+.+.+.+.|+..+.+++. -|..--.+..+.+-.+.+..+
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~v~~li~~l~~~~~~ 190 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT--VGLATPEEVAELVKALREALPD 190 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh--cCCcCHHHHHHHHHHHHHhCCC
Confidence 46678889999999999999999 4554 277999999999999999987777766 333222333333322222222
Q ss_pred CCCcccCCCCCCHHHHHHHHHH-HhCCCceeeC
Q 006673 512 QPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 543 (636)
Q Consensus 512 s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S 543 (636)
-.+.+=...+.-+- =.+.++- -.||+-|+-|
T Consensus 191 ~~~~~H~Hn~~gla-~an~laA~~aG~~~id~s 222 (265)
T cd03174 191 VPLGLHTHNTLGLA-VANSLAALEAGADRVDGS 222 (265)
T ss_pred CeEEEEeCCCCChH-HHHHHHHHHcCCCEEEec
Confidence 22222223333222 2345555 7788777655
No 429
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=38.29 E-value=3.7e+02 Score=25.86 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=71.8
Q ss_pred HHHHHHhhcCCcEEEEe------------c--CCCCCCHHHHHHHHHHHHHcC-CCeEEEcCccccCccchhHHHHHHHH
Q 006673 441 RHIANTKAYGANVVVAV------------N--MFATDSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAI------------N--rF~tDT~aEI~~v~e~c~~~G-v~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
...+.+++.|+|+|..- | ++..+..++...+.+++.+.+ .+.+++.. .+. +-+.+.++.+.+
T Consensus 81 ~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~--~~~-~~~~~~~~~~~~ 157 (298)
T cd06268 81 AAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIY--DDY-AYGRGLAAAFRE 157 (298)
T ss_pred hhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEE--cCC-chhHHHHHHHHH
Confidence 44566778999988641 1 124466778888889988777 65555532 222 234567777777
Q ss_pred HhhcCCCCC--cccCCC-CCCHHHHHHHHHHHhCCCceeeC---HHHHHHHHHHHhCCCCCCCeeE
Q 006673 506 ACENVTQPL--KFLYPL-DVSIKEKIDTIARSYGASGVEYS---EEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 506 a~e~~~s~f--k~LY~~-~~~L~eKIetIA~IYGA~~V~~S---~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+++...-++ ...|+. .......+.++.+- +.+.|... ..+..=++.+.++|+ +.+|+.
T Consensus 158 ~~~~~g~~i~~~~~~~~~~~~~~~~~~~l~~~-~~~~vi~~~~~~~~~~~~~~~~~~g~-~~~~~~ 221 (298)
T cd06268 158 ALKKLGGEVVAEETYPPGATDFSPLIAKLKAA-GPDAVFLAGYGGDAALFLKQAREAGL-KVPIVG 221 (298)
T ss_pred HHHHcCCEEEEEeccCCCCccHHHHHHHHHhc-CCCEEEEccccchHHHHHHHHHHcCC-CCcEEe
Confidence 776421111 122332 24566666665432 33444443 467888889999998 777765
No 430
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=38.20 E-value=1.5e+02 Score=27.29 Aligned_cols=56 Identities=13% Similarity=-0.043 Sum_probs=36.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
-+.|++|+.|+-.-..+.+ .+...+++...|.. +.. .=++=|+|-.+|-+.+++.+
T Consensus 105 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 105 DNAQVILVGNKCDMEDERVVSSERGRQLADQLGFE-FFE--ASAKENINVKQVFERLVDII 162 (165)
T ss_pred CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCE-EEE--EECCCCCCHHHHHHHHHHHH
Confidence 4789999999876533322 24445667777775 332 33467778888888877654
No 431
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=38.20 E-value=25 Score=37.75 Aligned_cols=26 Identities=27% Similarity=0.493 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.++|+|++ |.|.||||+++-|++.++
T Consensus 4 ~~~i~i~G----ptgsGKt~la~~la~~~~ 29 (307)
T PRK00091 4 PKVIVIVG----PTASGKTALAIELAKRLN 29 (307)
T ss_pred ceEEEEEC----CCCcCHHHHHHHHHHhCC
Confidence 46888887 569999999999999884
No 432
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=38.12 E-value=26 Score=37.64 Aligned_cols=35 Identities=29% Similarity=0.303 Sum_probs=27.2
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCcccc
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFN 139 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iN 139 (636)
|-|.|||||+-=|..+| ++-+.... .|++|||-|-
T Consensus 90 svavGKST~ar~L~~ll-~~~~~~~~-----------------------v~lvpmDGFh 124 (283)
T COG1072 90 SVAVGKSTTARILQALL-SRWPESPK-----------------------VDLVTMDGFH 124 (283)
T ss_pred CccccHHHHHHHHHHHH-hhCCCCCc-----------------------eEEEeccccc
Confidence 45899999999998888 46555432 4999999873
No 433
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=38.09 E-value=45 Score=36.04 Aligned_cols=67 Identities=21% Similarity=0.142 Sum_probs=46.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIH 147 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~h 147 (636)
+=.+|-|-.| |==|.|||-+++-|++.| ...|++..+.-| |-+|-..| -.-+|-|-. +-+-+||=.
T Consensus 34 ~vpVIsVGNl--tvGGTGKTP~v~~L~~~L-~~~G~~~~IlSR--------GYg~~~~~-~~~~v~~~~--~~~~~GDEp 99 (326)
T PF02606_consen 34 PVPVISVGNL--TVGGTGKTPLVIWLARLL-QARGYRPAILSR--------GYGRKSKG-EPILVSDGS--DAEEVGDEP 99 (326)
T ss_pred CCcEEEEccc--ccCCCCchHHHHHHHHHH-HhcCCceEEEcC--------CCCCCCCC-CeEEEeCCC--ChhhhcCHH
Confidence 3446666655 667999999999999999 578999999888 33333332 234444444 788888854
Q ss_pred H
Q 006673 148 A 148 (636)
Q Consensus 148 A 148 (636)
.
T Consensus 100 ~ 100 (326)
T PF02606_consen 100 L 100 (326)
T ss_pred H
Confidence 3
No 434
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=38.04 E-value=83 Score=34.32 Aligned_cols=114 Identities=20% Similarity=0.135 Sum_probs=65.1
Q ss_pred CCHHHHHHHcCCCCcccccccCeeeeeccchhhhccC-CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 29 LHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEG-SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 29 ~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~-~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.....||+-+-+-++.-..+ ......+++++.. .++..+|-||+ |-|.||||++--|...|. ..|+++.+
T Consensus 19 g~~~a~a~~it~~e~~~~~~----~~~~~~l~~~~~~~~~~~~~igi~G----~~GaGKSTl~~~l~~~l~-~~g~~v~v 89 (332)
T PRK09435 19 GDRAALARAITLVESTRPDH----RALAQELLDALLPHTGNALRIGITG----VPGVGKSTFIEALGMHLI-EQGHKVAV 89 (332)
T ss_pred CCHHHHHHHHHHHhCCCchh----hHHHHHHHHHHhhcCCCcEEEEEEC----CCCCCHHHHHHHHHHHHH-HCCCeEEE
Confidence 34556666665544432211 1122345555432 23455777776 479999999999999995 67988877
Q ss_pred EeeCCCCCCccccccCCC-----------CCCceeeecCccccccccchhhHHHHHHhHH
Q 006673 108 CLRQPSQGPTFGIKGGAA-----------GGGYSQVIPMDEFNLHLTGDIHAITAANNLL 156 (636)
Q Consensus 108 ~lRePSlGP~FGiKGGAa-----------GGGysqv~Pme~iNLHfTGD~hAItaA~NLl 156 (636)
.-=.||-- .-|||- .....-+.+|.- --|+-|.-+++-.|-.++
T Consensus 90 i~~Dp~s~----~~~gallgd~~r~~~~~~~~~~~~r~~~~-~~~l~~~a~~~~~~~~~~ 144 (332)
T PRK09435 90 LAVDPSST----RTGGSILGDKTRMERLSRHPNAFIRPSPS-SGTLGGVARKTRETMLLC 144 (332)
T ss_pred EEeCCCcc----ccchhhhchHhHHHhhcCCCCeEEEecCC-cccccchHHHHHHHHHHH
Confidence 76677532 333331 112234445444 445556666666555554
No 435
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=37.99 E-value=1.3e+02 Score=28.82 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=37.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
+.+.++.+..+++|+|+++|+.....+.++. ++....+.. +..+. ++-|+|-.++-+.+.+
T Consensus 142 ~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~-~~~~S--a~~~~gi~~l~~~L~~ 202 (204)
T cd01878 142 VEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPD-AVFIS--AKTGEGLDELLEAIEE 202 (204)
T ss_pred HHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCc-eEEEE--cCCCCCHHHHHHHHHh
Confidence 3344455555789999999999877666665 344434443 33332 4556777777665544
No 436
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=37.84 E-value=25 Score=35.13 Aligned_cols=26 Identities=23% Similarity=0.379 Sum_probs=21.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+++|+|+++ -|.||||.+--|++-+
T Consensus 2 ~~~~i~i~G~----~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGI----PGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 3679999997 4999999997777655
No 437
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=37.81 E-value=27 Score=37.74 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=26.9
Q ss_pred cchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 57 LSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 57 ~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..++.+....+.--+|+++|. .|.||||++.-|+..|
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~----sgsGKStlA~~La~~l 116 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGA----SGVGTSTIAFELASRL 116 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECC----CCCCHHHHHHHHHHHh
Confidence 455555554444568888885 5999999888888666
No 438
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=37.75 E-value=34 Score=34.39 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=23.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++.++|.++|+ .|-||||++.-+++-.
T Consensus 17 ~~~~~v~I~G~----~G~GKT~LA~~~~~~~ 43 (287)
T PF00931_consen 17 NEVRVVAIVGM----GGIGKTTLARQVARDL 43 (287)
T ss_dssp TSSEEEEEEES----TTSSHHHHHHHHHCHH
T ss_pred CCeEEEEEEcC----CcCCcceeeeeccccc
Confidence 56889999998 6999999998888773
No 439
>PRK08227 autoinducer 2 aldolase; Validated
Probab=37.70 E-value=2.6e+02 Score=29.78 Aligned_cols=98 Identities=14% Similarity=0.214 Sum_probs=57.5
Q ss_pred HHhHHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 006673 435 GCVNLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAINrF~--tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s 512 (636)
=+.+|.+=++..++||+|++.-.=+=+ .|...-|....+.+.++|+. ++-.-|. | ..++ +|++.|. .
T Consensus 125 ~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia~aaRiaaELGAD--iVK~~y~----~-~~f~-~vv~a~~---v 193 (264)
T PRK08227 125 SIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQ--IIKTYYV----E-EGFE-RITAGCP---V 193 (264)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHHHHHHHHHHHcCC--EEecCCC----H-HHHH-HHHHcCC---C
Confidence 366888889999999999887332211 34444677777778899995 4566665 1 3343 4555542 2
Q ss_pred CCcccCCCCCCHHHHHHHHHH--HhCCCceeeC
Q 006673 513 PLKFLYPLDVSIKEKIDTIAR--SYGASGVEYS 543 (636)
Q Consensus 513 ~fk~LY~~~~~L~eKIetIA~--IYGA~~V~~S 543 (636)
+.=..=-...+.+|=++.+-. --||.+|.+-
T Consensus 194 PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~G 226 (264)
T PRK08227 194 PIVIAGGKKLPERDALEMCYQAIDEGASGVDMG 226 (264)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCceeeec
Confidence 221222223344554555554 3577777663
No 440
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=37.69 E-value=25 Score=41.16 Aligned_cols=34 Identities=29% Similarity=0.416 Sum_probs=26.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+++|.| |.|.|||||.+.+...+ -..|++..+|
T Consensus 174 ~~~lI~G----pPGTGKT~t~~~ii~~~-~~~g~~VLv~ 207 (637)
T TIGR00376 174 DLFLIHG----PPGTGKTRTLVELIRQL-VKRGLRVLVT 207 (637)
T ss_pred CeEEEEc----CCCCCHHHHHHHHHHHH-HHcCCCEEEE
Confidence 5788877 78999999999998877 3568865554
No 441
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=37.67 E-value=11 Score=33.95 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCCCCCC
Q 006673 522 VSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAA 577 (636)
Q Consensus 522 ~~L~eKIetIA~IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlSdDp~ 577 (636)
+=++.|||++++=+|-+ ++.+..+...++.+.+ | -++-||.+|+.++|+++|+
T Consensus 16 ~~ik~kve~~l~~~gi~-~~~~~~~v~~~~~~~~-~-aDiiv~s~~l~~~~~~~~~ 68 (93)
T COG3414 16 TMIKMKVEEVLKELGID-VDVEQCAVDEIKALTD-G-ADIIVTSTKLADEFEDIPK 68 (93)
T ss_pred HHHHHHHHHHHHHcCCC-ceeeeEEecccccCCC-c-ccEEEEehHhhhhcCcCCC
Confidence 34789999999977776 6766666666655544 2 4889999999999999998
No 442
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=37.55 E-value=24 Score=34.04 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=18.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~a 96 (636)
|++|++++ |.|.||||+.--|+.-
T Consensus 2 g~~i~l~G----~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 2 GKLIWLMG----PSGSGKDSLLAALRQR 25 (186)
T ss_pred CcEEEEEC----CCCCCHHHHHHHHhcc
Confidence 66788877 7899999988777443
No 443
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=37.47 E-value=59 Score=36.21 Aligned_cols=77 Identities=12% Similarity=0.144 Sum_probs=57.0
Q ss_pred eehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHh--HHHHHHHHHhhcCCcEEEE-ecCCCCCCHHHHHHHHHHHHH
Q 006673 401 TIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV--NLARHIANTKAYGANVVVA-VNMFATDSKAELNAVRNAAMA 477 (636)
Q Consensus 401 TvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~--NL~kHIeNi~~fGvPvVVA-INrF~tDT~aEI~~v~e~c~~ 477 (636)
.++.||-. |+.....|. +..+++.++.+.||.. ...+-++.++++|+.+.+- |==||.+|.++++...+++.+
T Consensus 289 ~l~~l~~a-G~~~v~iGi---ES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 289 TLKVMKEN-GLRLLLVGY---ESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHc-CCCEEEEcC---CCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 34666654 444445552 5566777888888854 6677889999999986643 336899999999999999999
Q ss_pred cCCC
Q 006673 478 AGAF 481 (636)
Q Consensus 478 ~Gv~ 481 (636)
++..
T Consensus 365 l~~~ 368 (472)
T TIGR03471 365 LNPH 368 (472)
T ss_pred cCCC
Confidence 9875
No 444
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=37.45 E-value=1.3e+02 Score=28.97 Aligned_cols=72 Identities=8% Similarity=0.051 Sum_probs=45.2
Q ss_pred HhHH-HHHHHHHhhc--CCcEEEEecCCCCCCH------------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 006673 436 CVNL-ARHIANTKAY--GANVVVAVNMFATDSK------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 500 (636)
Q Consensus 436 ~~NL-~kHIeNi~~f--GvPvVVAINrF~tDT~------------aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA 500 (636)
|.|+ .+.++.++++ ++|+|++-|+-.-..+ -+-+...++|++.+.. ...+.=|+=|+|-.++=
T Consensus 88 f~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~--~~~E~SAk~~~nV~~~F 165 (176)
T cd04133 88 YENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA--AYIECSSKTQQNVKAVF 165 (176)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC--EEEECCCCcccCHHHHH
Confidence 4455 3455555543 7999999999653111 1233456777877763 12355567788888888
Q ss_pred HHHHHHhhc
Q 006673 501 IAVQRACEN 509 (636)
Q Consensus 501 ~aVv~a~e~ 509 (636)
+.+++.+.+
T Consensus 166 ~~~~~~~~~ 174 (176)
T cd04133 166 DAAIKVVLQ 174 (176)
T ss_pred HHHHHHHhc
Confidence 777776543
No 445
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=37.35 E-value=2.1e+02 Score=28.57 Aligned_cols=61 Identities=21% Similarity=0.152 Sum_probs=39.1
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCC--CCCC--------HHHHH---HHHHHHHHcCCCeEEEcC
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMF--ATDS--------KAELN---AVRNAAMAAGAFDAVVCS 487 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF--~tDT--------~aEI~---~v~e~c~~~Gv~~~avs~ 487 (636)
.++-...++++..++++|+..+++|.++||..--+ ..+. +...+ .+.++|++.|+. +.+-.
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~-l~~e~ 146 (274)
T COG1082 73 SPDEEEREEALEELKRAIELAKELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIG-LALEN 146 (274)
T ss_pred CCchhhHHHHHHHHHHHHHHHHHcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCc-eEEee
Confidence 34444558889999999999999999988855422 1111 23344 444555677876 55554
No 446
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=37.35 E-value=29 Score=30.48 Aligned_cols=27 Identities=33% Similarity=0.541 Sum_probs=19.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+++.++|+| |.|.||||+..=+.+.+.
T Consensus 3 ~~~~~~i~G----~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISG----PPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-----TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEc----CCCCCHHHHHHHHHHHhH
Confidence 467888988 679999999999988884
No 447
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=37.35 E-value=1.3e+02 Score=26.79 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHhhcCCcEEEEecCCCCCCH--HHHHHHHHHHHH-cC----CCeEEEcCccccCccchhHHHHHHHH
Q 006673 444 ANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMA-AG----AFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~--aEI~~v~e~c~~-~G----v~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
+.++..+.|+++++|+..-..+ .+++.+.+..++ .+ .+ +.. .=++-|+|-.++-+.+.+
T Consensus 107 ~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 107 GLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP-IVF--ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred HHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc-eEE--EeccCCCCHHHHHHHHHH
Confidence 3455678999999999864333 566666665543 22 22 222 224556776666665543
No 448
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=37.32 E-value=5.1e+02 Score=27.12 Aligned_cols=156 Identities=17% Similarity=0.295 Sum_probs=91.3
Q ss_pred cchhccccccccCCCCcceEEEEeeehhhhhc-CCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHh-hcCCcEE
Q 006673 377 GAEKFMNIKCRYSGLTPQCAVIVATIRALKMH-GGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTK-AYGANVV 454 (636)
Q Consensus 377 GaEKF~dIkcr~~gl~P~avVlVaTvRALK~H-GG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~-~fGvPvV 454 (636)
+.||+++--.+..++.||++-|- ++ ||... . ..+ .+. ..++ .+|+|+|
T Consensus 13 ~~~~l~~~~~~l~~~~pd~isvT-------~~~~~~~~------------~---~t~-----~~a---~~l~~~~g~~~i 62 (272)
T TIGR00676 13 GEENLWETVDRLSPLDPDFVSVT-------YGAGGSTR------------D---RTV-----RIV---RRIKKETGIPTV 62 (272)
T ss_pred hHHHHHHHHHHHhcCCCCEEEec-------cCCCCCcH------------H---HHH-----HHH---HHHHHhcCCCee
Confidence 35777776667788999987552 33 22211 1 111 122 3344 4799998
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHcCCCeEE-EcCccccCc----cchhHHHHHHHHHhhcCCCCCc---ccCCC----CC
Q 006673 455 VAVNMFATDSKAELNAVRNAAMAAGAFDAV-VCSHHAHGG----KGAVDLGIAVQRACENVTQPLK---FLYPL----DV 522 (636)
Q Consensus 455 VAINrF~tDT~aEI~~v~e~c~~~Gv~~~a-vs~~wa~GG----eGa~eLA~aVv~a~e~~~s~fk---~LY~~----~~ 522 (636)
+=+---.. +..+++.....+.++|++++. +.--...+| +|.-+-|-..++.+.+...+|. -.|+. ..
T Consensus 63 ~Hlt~r~~-n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Peghp~~~ 141 (272)
T TIGR00676 63 PHLTCIGA-TREEIREILREYRELGIRHILALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPEKHPEAP 141 (272)
T ss_pred EEeeecCC-CHHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCCCCCCCC
Confidence 87765544 577888888888999998654 444444444 2333345545555543212342 45655 35
Q ss_pred CHHHHHHHHHH--HhCCC----ceeeCHHHHHHHH-HHHhCCCCCCCee
Q 006673 523 SIKEKIDTIAR--SYGAS----GVEYSEEAEKQIE-MYTGQGFSGLPIC 564 (636)
Q Consensus 523 ~L~eKIetIA~--IYGA~----~V~~S~~A~kqLk-~ie~lG~~~LPVC 564 (636)
+.++-++.+.+ -+||+ ...|+.++-.++. ++++.|.+ +||.
T Consensus 142 ~~~~~~~~L~~K~~aGA~f~iTQ~~fd~~~~~~~~~~~~~~gi~-~PIi 189 (272)
T TIGR00676 142 NLEEDIENLKRKVDAGADYAITQLFFDNDDYYRFVDRCRAAGID-VPII 189 (272)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeccccCHHHHHHHHHHHHHcCCC-CCEe
Confidence 56666777767 57884 4567777766554 45667764 5654
No 449
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=37.28 E-value=34 Score=38.22 Aligned_cols=31 Identities=35% Similarity=0.296 Sum_probs=26.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.++|-||+.+ ||||||-=|.+.| ...|+++.
T Consensus 115 ~~~IaITGTn------GKTTTt~ll~~iL-~~~g~~~~ 145 (468)
T PRK04690 115 PGTVCVTGTK------GKSTTTALLAHLL-RAAGHRTA 145 (468)
T ss_pred CCEEEEeCCC------CHHHHHHHHHHHH-HhcCCcEE
Confidence 4799999986 9999999999999 57787653
No 450
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=37.25 E-value=1.7e+02 Score=32.09 Aligned_cols=81 Identities=17% Similarity=0.329 Sum_probs=52.7
Q ss_pred eEEEEeeehh------hhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecC---CCCCCH
Q 006673 395 CAVIVATIRA------LKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM---FATDSK 465 (636)
Q Consensus 395 avVlVaTvRA------LK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINr---F~tDT~ 465 (636)
-|+||++=+. ++.++|... . .|+....|.++...+|++|+|--++- ++.-..
T Consensus 112 pV~VIa~dkg~~~~e~~~~~~G~~~---------------p----~g~rKa~Rlm~lA~~f~lPIItlvDTpGA~~G~~A 172 (322)
T CHL00198 112 TIVFLGHQRGRNTKENVLRNFGMPS---------------P----GGYRKALRLMKHANKFGLPILTFIDTPGAWAGVKA 172 (322)
T ss_pred EEEEEEecCCccchhhhhhcCCCCC---------------H----HHHHHHHHHHHHHHHcCCCEEEEEeCCCcCcCHHH
Confidence 4888887765 345666532 2 35556778889999999999999994 665544
Q ss_pred HHH---HHHHHHH---HHcCCCeEEEcCccccCccch
Q 006673 466 AEL---NAVRNAA---MAAGAFDAVVCSHHAHGGKGA 496 (636)
Q Consensus 466 aEI---~~v~e~c---~~~Gv~~~avs~~wa~GGeGa 496 (636)
+|- ..+.+.. ....++ .+|=+-.+||-|+
T Consensus 173 E~~G~~~aiar~l~~~a~~~VP--~IsVViGeggsGG 207 (322)
T CHL00198 173 EKLGQGEAIAVNLREMFSFEVP--IICTIIGEGGSGG 207 (322)
T ss_pred HHHhHHHHHHHHHHHHHcCCCC--EEEEEeCcccHHH
Confidence 432 2343332 245565 5777778876666
No 451
>PLN03127 Elongation factor Tu; Provisional
Probab=37.20 E-value=1.2e+02 Score=34.19 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhcCCcE-EEEecCCCCCCHHH
Q 006673 438 NLARHIANTKAYGANV-VVAVNMFATDSKAE 467 (636)
Q Consensus 438 NL~kHIeNi~~fGvPv-VVAINrF~tDT~aE 467 (636)
.-+.|+..++.+|+|. ||+||+..-=+++|
T Consensus 164 qt~e~l~~~~~~gip~iIvviNKiDlv~~~~ 194 (447)
T PLN03127 164 QTKEHILLARQVGVPSLVVFLNKVDVVDDEE 194 (447)
T ss_pred hHHHHHHHHHHcCCCeEEEEEEeeccCCHHH
Confidence 3477999999999994 78999987543333
No 452
>PRK08939 primosomal protein DnaI; Reviewed
Probab=37.17 E-value=44 Score=35.66 Aligned_cols=72 Identities=15% Similarity=0.081 Sum_probs=43.8
Q ss_pred CHHHHHHHcCCCC----cccccccCe-----eee-eccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh
Q 006673 30 HISEIAQELNLKP----NHYDLYGKY-----KAK-VLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA 99 (636)
Q Consensus 30 ~I~~ia~~lgl~~----~~l~~YG~~-----kAK-i~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~ 99 (636)
.+...-+..+++. -.++.|... .|. ...+++++....+.+|=++++| |.|.|||..+.+++..|.
T Consensus 107 ~~~~~i~~a~~p~~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G----~~G~GKThLa~Aia~~l~- 181 (306)
T PRK08939 107 AIKKRIQSIYMPKDLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYG----DFGVGKSYLLAAIANELA- 181 (306)
T ss_pred HHHHHHHHcCCCHhHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-
Confidence 4566666778875 234444321 111 1123444433223566677777 579999999999999995
Q ss_pred hcCCcEE
Q 006673 100 FLDKKVV 106 (636)
Q Consensus 100 ~lg~~~~ 106 (636)
+.|+++.
T Consensus 182 ~~g~~v~ 188 (306)
T PRK08939 182 KKGVSST 188 (306)
T ss_pred HcCCCEE
Confidence 6787754
No 453
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=37.17 E-value=38 Score=35.76 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=25.3
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
.|-|++- .|.||||+..-|...| .+.| + ++.+--
T Consensus 3 ~i~i~G~----~gSGKTTLi~~Li~~L-~~~G-~-V~~IKh 36 (274)
T PRK14493 3 VLSIVGY----KATGKTTLVERLVDRL-SGRG-R-VGTVKH 36 (274)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHH-HhCC-C-EEEEEE
Confidence 4555543 3999999999999999 4778 4 555554
No 454
>PRK13947 shikimate kinase; Provisional
Probab=37.02 E-value=19 Score=33.56 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
|+++++ .|.||||++.-|++.|+
T Consensus 4 I~l~G~----~GsGKst~a~~La~~lg 26 (171)
T PRK13947 4 IVLIGF----MGTGKTTVGKRVATTLS 26 (171)
T ss_pred EEEEcC----CCCCHHHHHHHHHHHhC
Confidence 566664 69999999999988874
No 455
>PRK08118 topology modulation protein; Reviewed
Probab=36.95 E-value=19 Score=34.66 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.3
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
|+|.| |-|.||||++.-|++-++
T Consensus 4 I~I~G----~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 4 IILIG----SGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEC----CCCCCHHHHHHHHHHHhC
Confidence 66666 569999998888887773
No 456
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=36.94 E-value=96 Score=33.03 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccC
Q 006673 436 CVNLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHG 492 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGv-PvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~G 492 (636)
+....+.|+.+++.|+ |+.+-.=-.+..+++|+..+.+++++.|+. +.+.+...-|
T Consensus 139 ~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~-~~~ie~mP~g 195 (329)
T PRK13361 139 LERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLD-IAFIEEMPLG 195 (329)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCe-EEEEecccCC
Confidence 3345555666677888 554321123456789999999999999995 6555544444
No 457
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=36.81 E-value=34 Score=39.63 Aligned_cols=40 Identities=33% Similarity=0.411 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
++|..|++|+. .|.||||++-.|++.|+..-|. .+..|+.
T Consensus 390 ~~g~~Ivl~Gl----~GSGKSTia~~La~~L~~~~g~-~~~~lD~ 429 (568)
T PRK05537 390 KQGFTVFFTGL----SGAGKSTIAKALMVKLMEMRGR-PVTLLDG 429 (568)
T ss_pred CCCeEEEEECC----CCChHHHHHHHHHHHhhhccCc-eEEEeCC
Confidence 45889999986 6999999999999999532343 3444443
No 458
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=36.71 E-value=1.6e+02 Score=31.97 Aligned_cols=58 Identities=19% Similarity=0.102 Sum_probs=38.0
Q ss_pred cCCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI--~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.+.|+||++|+..-..++++ +.++.++.+.+.. +..+. +.=|+|-.+|-+.+.+.+.+
T Consensus 270 ~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~-i~~iS--Aktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 270 ADKPRILVLNKIDLLDEEEEREKRAALELAALGGP-VFLIS--AVTGEGLDELLRALWELLEE 329 (335)
T ss_pred ccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCC-EEEEE--cCCCCCHHHHHHHHHHHHHh
Confidence 46899999999875333332 2345556666665 44333 34468888898888887754
No 459
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=36.70 E-value=1.4e+02 Score=28.27 Aligned_cols=69 Identities=9% Similarity=0.003 Sum_probs=41.3
Q ss_pred HhHHHHHHHHHhhc--CCcEEEEecCCCCCCHH----H--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 436 CVNLARHIANTKAY--GANVVVAVNMFATDSKA----E--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 436 ~~NL~kHIeNi~~f--GvPvVVAINrF~tDT~a----E--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+.++..-++.++++ ++|++++.|+..-.... + .+.+.+++.+.++. +..+ =++=|+|-.+|-+.+.+.+
T Consensus 89 ~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~~~gv~~l~~~i~~~~ 165 (193)
T cd04118 89 FERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQ-HFET--SSKTGQNVDELFQKVAEDF 165 (193)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCe-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 33444444555543 79999999998742211 1 23456677777775 3322 3345577777777777655
No 460
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=36.66 E-value=40 Score=36.89 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=27.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.+.|-||+.+ ||||||-=|++.| ...|+++..
T Consensus 108 ~~~~I~VTGT~------GKTTTt~ml~~iL-~~~g~~~~~ 140 (459)
T PRK02705 108 HIPWVGITGTN------GKTTVTALLAHIL-QAAGLNAPA 140 (459)
T ss_pred CCCEEEEeCCC------chHHHHHHHHHHH-HHcCCCeEE
Confidence 46789999875 9999999999999 577876543
No 461
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=36.54 E-value=23 Score=37.10 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=23.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
=||+++ |.|.||||++..+++.+ .++|..
T Consensus 60 ~vll~G----~pGTGKT~lA~~ia~~l-~~~g~~ 88 (284)
T TIGR02880 60 HMSFTG----NPGTGKTTVALRMAQIL-HRLGYV 88 (284)
T ss_pred eEEEEc----CCCCCHHHHHHHHHHHH-HHcCCc
Confidence 466666 68999999999999999 466643
No 462
>PLN03110 Rab GTPase; Provisional
Probab=36.48 E-value=1e+02 Score=30.41 Aligned_cols=67 Identities=10% Similarity=-0.019 Sum_probs=37.7
Q ss_pred HHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
|+.+-++.+++ .++|+|++.|+-.-+... +.+..++++...+.. +..+ =++=|+|-.++-+.+++.+
T Consensus 102 ~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~-~~e~--SA~~g~~v~~lf~~l~~~i 173 (216)
T PLN03110 102 NVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLS-FLET--SALEATNVEKAFQTILLEI 173 (216)
T ss_pred HHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCE-EEEE--eCCCCCCHHHHHHHHHHHH
Confidence 44444444443 589999999996543221 123445566666664 3333 2556666666666555544
No 463
>PRK08760 replicative DNA helicase; Provisional
Probab=36.15 E-value=1.5e+02 Score=33.67 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=29.0
Q ss_pred hhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 59 VLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 59 ~~~~~~-~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
-|+++- .-.+|.||+|+|- -|-||||++.-++.....+.|++
T Consensus 218 ~LD~~t~G~~~G~LivIaar----Pg~GKTafal~iA~~~a~~~g~~ 260 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAAR----PAMGKTTFALNIAEYAAIKSKKG 260 (476)
T ss_pred HHHHHhcCCCCCceEEEEeC----CCCChhHHHHHHHHHHHHhcCCc
Confidence 445532 2356999999995 48999999998887653233444
No 464
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=36.10 E-value=1.3e+02 Score=32.68 Aligned_cols=85 Identities=22% Similarity=0.279 Sum_probs=46.6
Q ss_pred HHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCCCcceecceeEeehhhHHHHHH
Q 006673 196 RRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVASEIMAVLA 275 (636)
Q Consensus 196 ~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r~~gFdITvASEiMAIl~ 275 (636)
..|++.|..-..+..++.+|..++++ +|-...+.+..---+ +.-|=+++|.|| ++|++.-.|+
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~y~r-~i~l~~~g~~~q~~l--~~~~VlvvG~GG--------------~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDERYSR-HLRLPEVGEEGQRRL--LEARVLLIGAGG--------------LGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHHHHH-hcchhhcCHHHHHHH--hcCcEEEECCCH--------------HHHHHHHHHH
Confidence 45566666666777788888777654 222111211100001 223445667764 4677777776
Q ss_pred ccCCHHHHHHHhcCcEEeecCCCCceeeccccc
Q 006673 276 LTTSLADMRERLGKMVIGNSKAGDPITADDLGV 308 (636)
Q Consensus 276 La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~ 308 (636)
++- +++|++ .|+.-|...+|+-
T Consensus 156 ~~G--------vg~i~l---vD~d~v~~sNl~R 177 (376)
T PRK08762 156 AAG--------VGTLGI---VDHDVVDRSNLQR 177 (376)
T ss_pred HcC--------CCeEEE---EeCCEecchhhcc
Confidence 554 466666 3666676666654
No 465
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=36.04 E-value=49 Score=35.14 Aligned_cols=40 Identities=20% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCcEEEEeeCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTCLRQP 112 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~l-g~~~~~~lReP 112 (636)
.++-|||++ |-|.||||+.-.|.+.+. .. ....++++=+|
T Consensus 131 ~~~~ilI~G----~tGSGKTTll~al~~~i~-~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 131 ARKNILVVG----GTGSGKTTLANALLAEIA-KNDPTDRVVIIEDT 171 (299)
T ss_pred cCCeEEEEC----CCCCCHHHHHHHHHHHhh-ccCCCceEEEECCc
Confidence 356788998 459999999999988873 32 23346666554
No 466
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=36.00 E-value=21 Score=36.15 Aligned_cols=27 Identities=41% Similarity=0.536 Sum_probs=18.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+|.||+ || |.||||++-=|. .+|.+.+
T Consensus 2 ~I~ITG---TP-GvGKTT~~~~L~-----~lg~~~i 28 (180)
T COG1936 2 LIAITG---TP-GVGKTTVCKLLR-----ELGYKVI 28 (180)
T ss_pred eEEEeC---CC-CCchHHHHHHHH-----HhCCcee
Confidence 466665 44 999999987665 3466654
No 467
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=35.99 E-value=1.6e+02 Score=28.07 Aligned_cols=56 Identities=23% Similarity=0.215 Sum_probs=36.8
Q ss_pred CCcEEEEecCCCCCCH------------HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 450 GANVVVAVNMFATDSK------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 450 GvPvVVAINrF~tDT~------------aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.+|+|++.|+..-..+ ...+...+++++.|...+..+. ++-|+|-.+|-+.+.+.+
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S--a~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 105 NVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECS--ALTGEGVDDVFEAATRAA 172 (187)
T ss_pred CCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEcc--CCCCCCHHHHHHHHHHHH
Confidence 6999999999764210 0124456777778863344343 788899888877776544
No 468
>TIGR02116 toxin_Txe_YoeB toxin-antitoxin system, toxin component, Txe/YoeB family. The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This model describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by matches to TIGR01552 and/or pfam02604.
Probab=35.83 E-value=17 Score=31.00 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred eCHHHHHHHHHHHhCC------CCCCCeeEeecCCCCCCC-CCCCCCCCCc-eEEee-EEEe
Q 006673 542 YSEEAEKQIEMYTGQG------FSGLPICMAKTQYSFSHN-AAEKGAPTGF-ILPIR-DVRA 594 (636)
Q Consensus 542 ~S~~A~kqLk~ie~lG------~~~LPVCmAKTqySlSdD-p~l~G~P~gf-~l~Vr-dv~~ 594 (636)
|++.|+++|+++.+.. +.+.--.++..|++-+-+ -+|+|...|| .+.|. |-|+
T Consensus 1 ~~~~a~kdlkkl~k~~~~~~~~i~~~i~~l~~~P~~~~~~~~~L~G~~~g~~r~rig~dyRI 62 (80)
T TIGR02116 1 FTPEAWEDYKKWQEADKKLKKKINELIKDVRRDPFKGKGKPEPLKGDLSGYWSRRITDEHRL 62 (80)
T ss_pred CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCCCCCCcccCCCCCCCcEEEEcCCCeEE
Confidence 5777888888775532 111111345567764444 3589999995 77777 6554
No 469
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=35.83 E-value=1.4e+02 Score=31.28 Aligned_cols=96 Identities=13% Similarity=0.166 Sum_probs=62.5
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc-cc-cCccchhHHHHHHHHHhhcCCCCCcccCC
Q 006673 442 HIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH-HA-HGGKGAVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~-wa-~GGeGa~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
+++-+.+.|.||++-=..|. |.+|+....+.+++.|..++++|+. .+ .-+-.-.++=-.++..+.+. ..+-..||
T Consensus 124 LL~~~a~~gkPVilk~G~~~--t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~-~~~pV~~d 200 (260)
T TIGR01361 124 LLKEVGKQGKPVLLKRGMGN--TIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE-THLPIIVD 200 (260)
T ss_pred HHHHHhcCCCcEEEeCCCCC--CHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh-hCCCEEEc
Confidence 67777889999999877763 5899999999999999988999874 42 11322223333344444331 34667776
Q ss_pred CCCCHH--HHHHHHHH---HhCCCce
Q 006673 520 LDVSIK--EKIDTIAR---SYGASGV 540 (636)
Q Consensus 520 ~~~~L~--eKIetIA~---IYGA~~V 540 (636)
.+.+.- |=+..+|+ .+||+++
T Consensus 201 s~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 201 PSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred CCCCCCccchHHHHHHHHHHcCCCEE
Confidence 665433 44444443 8899864
No 470
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=35.78 E-value=49 Score=37.19 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCcE-EEEeeCC
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKV-VTCLRQP 112 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~-aL~~~lg~~~-~~~lReP 112 (636)
-|.|.++||++ +.|.||||.+.=++. ++ .+-|.++ .+.+-||
T Consensus 28 ~p~Gs~~li~G----~pGsGKT~l~~qf~~~~~-~~~ge~~lyis~ee~ 71 (509)
T PRK09302 28 LPKGRPTLVSG----TAGTGKTLFALQFLVNGI-KRFDEPGVFVTFEES 71 (509)
T ss_pred CCCCcEEEEEe----CCCCCHHHHHHHHHHHHH-HhcCCCEEEEEccCC
Confidence 37799999999 779999999987654 44 2337664 5555554
No 471
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=35.76 E-value=1.2e+02 Score=31.21 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccC
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY 518 (636)
...|++...+.|+|+|+.---| +++|++.+.+ |. .++. +.++-.|+-|---...|++.....+. . |
T Consensus 73 ~~~~~~~al~~G~~vvigttG~---s~~~~~~l~~-aa-~~~~-v~~s~n~s~g~~~~~~l~~~aa~~l~-------~-~ 138 (257)
T PRK00048 73 TLENLEFALEHGKPLVIGTTGF---TEEQLAELEE-AA-KKIP-VVIAPNFSIGVNLLMKLAEKAAKYLG-------D-Y 138 (257)
T ss_pred HHHHHHHHHHcCCCEEEECCCC---CHHHHHHHHH-Hh-cCCC-EEEECcchHHHHHHHHHHHHHHHhcC-------C-C
Confidence 4567778888999999983233 5778888888 44 6776 88999999988777777777665441 2 5
Q ss_pred CCCCCHHHHHHHHHHHhCCCceee-CHHHHHHHHHHHh
Q 006673 519 PLDVSIKEKIDTIARSYGASGVEY-SEEAEKQIEMYTG 555 (636)
Q Consensus 519 ~~~~~L~eKIetIA~IYGA~~V~~-S~~A~kqLk~ie~ 555 (636)
+-+ |..+-....++. |-.|.+-.+.+.+
T Consensus 139 d~e---------i~E~HH~~K~DaPSGTA~~l~~~i~~ 167 (257)
T PRK00048 139 DIE---------IIEAHHRHKVDAPSGTALKLAEAIAE 167 (257)
T ss_pred CEE---------EEEccCCCCCCCCCHHHHHHHHHHHH
Confidence 431 222556667777 7777777777765
No 472
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=35.74 E-value=64 Score=37.57 Aligned_cols=42 Identities=24% Similarity=0.245 Sum_probs=26.5
Q ss_pred HHHHHHHHhhcCC-cEEEEecCCCCC--CHHHHHHHH----HHHHHcCC
Q 006673 439 LARHIANTKAYGA-NVVVAVNMFATD--SKAELNAVR----NAAMAAGA 480 (636)
Q Consensus 439 L~kHIeNi~~fGv-PvVVAINrF~tD--T~aEI~~v~----e~c~~~Gv 480 (636)
.+.|+..++.+|+ |+||++|+...- .+++++.+. ++.++.|.
T Consensus 145 t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~ 193 (632)
T PRK05506 145 TRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGL 193 (632)
T ss_pred CHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCC
Confidence 3467778888887 578899997652 344455443 33345554
No 473
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=35.69 E-value=2.6e+02 Score=28.80 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=26.2
Q ss_pred ccccccCHHHHHHHHhHHHHHHHHHhh--cCCcEEEE
Q 006673 422 HAYLNENVALVEAGCVNLARHIANTKA--YGANVVVA 456 (636)
Q Consensus 422 ~~l~~eNleaL~~G~~NL~kHIeNi~~--fGvPvVVA 456 (636)
+++=++|.+.+.+-+.+|.+-++.... -+.++|+.
T Consensus 123 ~~~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~~~v~~ 159 (264)
T cd01020 123 KKYYQANAKKFVASLKPLAAKIAELSAKYKGAPVAAT 159 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 556678999999999999999988744 34555554
No 474
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=35.68 E-value=1.2e+02 Score=33.39 Aligned_cols=68 Identities=16% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCCCCHHHH----HHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFATDSKAEL----NAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~tDT~aEI----~~v~e~c~~~---Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
....|+..++.+|++ +||++|+-.--++++. +.++++.+.. ++. +.... +.=|+|-.+|-+.+...+.
T Consensus 121 qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~vS--A~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 121 QTKEHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAP-IIPVS--ALHNANIDALLEAIEKFIP 196 (406)
T ss_pred chHHHHHHHHHcCCCeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCe-EEEEE--CCCCCChHHHHHHHHHhCC
Confidence 356688888888875 8999999876555443 3444444432 333 33333 3456788888888776543
No 475
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=35.66 E-value=33 Score=32.19 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=20.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.++|+|.|. -|.||||++--|++.+
T Consensus 3 ~~ii~i~G~----~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIVGG----PGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 457888875 6999999998888766
No 476
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=35.63 E-value=1.5e+02 Score=27.36 Aligned_cols=64 Identities=8% Similarity=0.102 Sum_probs=42.5
Q ss_pred hHHHHHHHHHhhcC-CcEEEEec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHH
Q 006673 437 VNLARHIANTKAYG-ANVVVAVN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLG 500 (636)
Q Consensus 437 ~NL~kHIeNi~~fG-vPvVVAIN-rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA 500 (636)
.+..+-|+.+++.| +++.+-+= -++.++++++..+.+++++.|+..+.+.......|....+..
T Consensus 136 ~~~~~~i~~~~~~g~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~t~~~~~~ 201 (216)
T smart00729 136 EDVLEAVEKLREAGPIKVSTDLIVGLPGETEEDFEETLKLLKELGPDRVSIFPLSPRPGTPLAKLY 201 (216)
T ss_pred HHHHHHHHHHHHhCCcceEEeEEecCCCCCHHHHHHHHHHHHHcCCCeEEeeeeeeCCCChHHHhc
Confidence 45556666777777 65554332 245689999999999999999975555555545555444333
No 477
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=35.45 E-value=33 Score=38.62 Aligned_cols=28 Identities=32% Similarity=0.687 Sum_probs=24.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
--||-||+.+ |-|.|||..++|++|-|+
T Consensus 63 ~aGrgiLi~G----ppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 63 MAGRGILIVG----PPGTGKTALAMGIARELG 90 (450)
T ss_pred ccccEEEEEC----CCCCcHHHHHHHHHHHhC
Confidence 4599999987 889999999999999885
No 478
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.38 E-value=43 Score=36.56 Aligned_cols=104 Identities=13% Similarity=0.097 Sum_probs=56.9
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.-|++++++.+..+.. . -++++.+---..|- +.+.+.+++...... +... |+-+.+|++..
T Consensus 321 a~n~~a~~~al~~l~~-------~-~~~i~IlG~~~k~~--d~~~l~~~l~~~~~~-v~~~------g~~~~~l~~~~-- 381 (438)
T PRK03806 321 ATNVGSTEAALNGLHV-------D-GTLHLLLGGDGKSA--DFSPLARYLNGDNIR-LYCF------GRDGAQLAALR-- 381 (438)
T ss_pred CCCHHHHHHHHHhCcc-------C-CcEEEEECCcCCCC--CHHHHHHHHHhhCcE-EEEE------CCCHHHHHHHh--
Confidence 4689999988877641 1 25667666533333 333455555543332 3222 34455665422
Q ss_pred HhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHH--HHHHHHhCC
Q 006673 506 ACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEK--QIEMYTGQG 557 (636)
Q Consensus 506 a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~k--qLk~ie~lG 557 (636)
.+ . . ..| .++++=++.+.+ .--.+-|-+||.+.. |.+-||+.|
T Consensus 382 --~~--~-~-~~~---~~~~~av~~a~~~~~~gd~VLlsp~~as~d~f~~~~~RG 427 (438)
T PRK03806 382 --PE--V-S-QLT---ETMEQAMRLIAPRVQPGDMVLLSPACASLDQFKNFEQRG 427 (438)
T ss_pred --hc--c-e-Eec---CCHHHHHHHHHHhCCCCCEEEEChhhhhhcCccCHHHHH
Confidence 11 1 1 122 357777777666 555577999988743 555555544
No 479
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=35.30 E-value=24 Score=29.10 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=15.3
Q ss_pred CCCCCcchhHHHHHHHH
Q 006673 81 PLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL 97 (636)
+.|.||||++--|.+.|
T Consensus 7 ~~gsGKst~~~~l~~~l 23 (69)
T cd02019 7 GSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 57999999999998887
No 480
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=35.24 E-value=1.7e+02 Score=27.63 Aligned_cols=69 Identities=12% Similarity=-0.023 Sum_probs=38.9
Q ss_pred HhHHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhH----HHHHHHHH
Q 006673 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVD----LGIAVQRA 506 (636)
Q Consensus 436 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~e----LA~aVv~a 506 (636)
|.++.+.++.+++ ..+|+||+.|+..-..+. +.+..+++++..++. +..+.. +=|+|-.+ |++.+++-
T Consensus 88 ~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa--~~~~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 88 FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIP-FFETSA--KQSINVEEAFILLVKLIIKR 164 (188)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCe-EEEEeC--CCCCCHHHHHHHHHHHHHHH
Confidence 4455555554443 468999999997643222 223446677777875 333332 34566644 55555544
Q ss_pred h
Q 006673 507 C 507 (636)
Q Consensus 507 ~ 507 (636)
.
T Consensus 165 ~ 165 (188)
T cd04125 165 L 165 (188)
T ss_pred h
Confidence 3
No 481
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=35.22 E-value=43 Score=36.39 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=28.7
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
+.|-|++ +.|.||||+.--|...|. .-|.++ +.+..
T Consensus 206 ~~~~~~g----~~~~GKtt~~~~l~~~l~-~~g~~v-~~iKh 241 (366)
T PRK14489 206 PLLGVVG----YSGTGKTTLLEKLIPELI-ARGYRI-GLIKH 241 (366)
T ss_pred cEEEEec----CCCCCHHHHHHHHHHHHH-HcCCEE-EEEEE
Confidence 5677776 589999999999999994 668774 66664
No 482
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.19 E-value=5.2e+02 Score=26.64 Aligned_cols=44 Identities=25% Similarity=0.216 Sum_probs=30.3
Q ss_pred HHhHHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 435 GCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 435 G~~NL~kHIeNi~~--fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
|...+.++|+..++ .+.|++|-|+-. +.+|+....+.+.+.|+.
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~---~~~~~~~~a~~~~~~G~d 126 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGS---SKEDYVELARKIERAGAK 126 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccC---CHHHHHHHHHHHHHhCCC
Confidence 34445556665555 488988887655 567777777777888886
No 483
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=35.18 E-value=54 Score=36.12 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=28.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.|.++||++ |-|.||||+..-++..+. .-|.+++.
T Consensus 80 ~~GslvLI~G----~pG~GKStLllq~a~~~a-~~g~~VlY 115 (372)
T cd01121 80 VPGSVILIGG----DPGIGKSTLLLQVAARLA-KRGGKVLY 115 (372)
T ss_pred cCCeEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEE
Confidence 5689999999 679999999999988884 55555543
No 484
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=35.15 E-value=1.6e+02 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.043 Sum_probs=28.5
Q ss_pred CCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 450 GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 450 GvPvVVAINrF~tDT~aEI--------------~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
++|+|++.|+..-..++|+ +..+++|++.+...+..+. ++=|+|-.++-+.+++
T Consensus 105 ~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~S--A~tg~~v~~~f~~~~~ 172 (175)
T cd01874 105 KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECS--ALTQKGLKNVFDEAIL 172 (175)
T ss_pred CCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEec--CCCCCCHHHHHHHHHH
Confidence 7999999999764322221 1223345555521122222 3445666666665554
No 485
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=35.12 E-value=36 Score=36.75 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
.++-|||++ |-|.||||+.-.|.+.+. . .. .++++-+
T Consensus 159 ~~~nili~G----~tgSGKTTll~aL~~~ip-~-~~-ri~tiEd 195 (332)
T PRK13900 159 SKKNIIISG----GTSTGKTTFTNAALREIP-A-IE-RLITVED 195 (332)
T ss_pred cCCcEEEEC----CCCCCHHHHHHHHHhhCC-C-CC-eEEEecC
Confidence 467899998 459999999999998884 2 33 3566544
No 486
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=35.12 E-value=28 Score=36.10 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..+|.|+| +.|+||||++-.|.+-|+
T Consensus 8 ~iiIgIaG----~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 8 VIIIGIAG----GSGSGKTTVAKELSEQLG 33 (218)
T ss_pred eEEEEEeC----CCCCCHHHHHHHHHHHhC
Confidence 45777776 679999999999988884
No 487
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=35.11 E-value=38 Score=37.83 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=26.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.++|-||+.+ |||||+-=|++.| ...|+++.
T Consensus 121 ~~vIaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 151 (473)
T PRK00141 121 RTWLAVTGTN------GKTTTTAMLAAMM-QEGGFAAQ 151 (473)
T ss_pred CCEEEEeCCC------cHHHHHHHHHHHH-HhcCCcEE
Confidence 3799999986 9999999999999 57888764
No 488
>TIGR00053 addiction module toxin component, YafQ family. This model represents a cluster of eubacterial proteins and a cluster of archaeal proteins, all of which are uncharacterized, from 85 to 102 residues in length, and similar in sequence. These include YafQ, a ribosome-associated endoribonuclease that serves as part of a toxin-antitoxin system, for which DinJ is the antidote component.
Probab=35.08 E-value=20 Score=30.83 Aligned_cols=54 Identities=22% Similarity=0.260 Sum_probs=32.6
Q ss_pred ceeeCHHHHHHHHHHHh-CCCC-----CCCeeEeec-CCCCCC-CCCCCCCCCCc-eEEe-eEE
Q 006673 539 GVEYSEEAEKQIEMYTG-QGFS-----GLPICMAKT-QYSFSH-NAAEKGAPTGF-ILPI-RDV 592 (636)
Q Consensus 539 ~V~~S~~A~kqLk~ie~-lG~~-----~LPVCmAKT-qySlSd-Dp~l~G~P~gf-~l~V-rdv 592 (636)
.|.|++.|+++++++.+ .... +.--+++.+ +..-+- +-+|+|..+|| .++| .+.
T Consensus 3 ~i~~~~~a~k~lkkl~~~~~~~~~~i~~~i~~l~~~~~~p~~~~~~~L~G~~~g~~r~rv~~~~ 66 (89)
T TIGR00053 3 KIEYSKQFDKDLKKLSKRNGKDLKKLLKKMEELINTLPLPEHYKDHPLRGPWKGFRRCHIKPDV 66 (89)
T ss_pred ceEECHHHHHHHHHHHHhCCccHHHHHHHHHHHHcCCCCCcccCCccCcCCcCCCEEEeeCCCE
Confidence 47899999999999876 2211 111134443 222222 22699999995 6777 454
No 489
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.99 E-value=1.9e+02 Score=31.31 Aligned_cols=104 Identities=21% Similarity=0.301 Sum_probs=72.9
Q ss_pred cCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCc-ceEEEEeeehhhhhcCCCCCccCCCCCccc
Q 006673 345 HGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTP-QCAVIVATIRALKMHGGGPQVVAGKPLDHA 423 (636)
Q Consensus 345 hG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P-~avVlVaTvRALK~HGG~~~~~~g~pL~~~ 423 (636)
+|.-+|-||-++-.++|- ++++|=-==|.-=|||+=|||-.-...|.- +++|+.|-++++
T Consensus 107 ~gaTTVAaTMi~A~~aGI-~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsI------------------ 167 (310)
T COG2313 107 NGATTVAATMILAALAGI-KVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSI------------------ 167 (310)
T ss_pred CCcchHHHHHHHHHHcCc-eEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhh------------------
Confidence 566789999999999854 455565444788999999999888877774 445554423222
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEE-ecCCCC--------------CCHHHHHHHHHHHHHcCC
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVA-VNMFAT--------------DSKAELNAVRNAAMAAGA 480 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVA-INrF~t--------------DT~aEI~~v~e~c~~~Gv 480 (636)
-.+.+-.|-+..+|||||-- -|.||. ||++||.-+.+.-.++|.
T Consensus 168 -------------LDi~~TlE~LET~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lgl 226 (310)
T COG2313 168 -------------LDIGLTLEVLETQGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGL 226 (310)
T ss_pred -------------hccHHHHHHHHhcCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCC
Confidence 13556778888999999864 345543 888998877666555555
No 490
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=34.98 E-value=33 Score=39.30 Aligned_cols=32 Identities=31% Similarity=0.292 Sum_probs=23.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~ 103 (636)
+|++|++.+ |-|.|||||..-|+-.+-.+.|.
T Consensus 255 ~g~Vi~LvG----pnGvGKTTTiaKLA~~~~~~~G~ 286 (484)
T PRK06995 255 RGGVFALMG----PTGVGKTTTTAKLAARCVMRHGA 286 (484)
T ss_pred CCcEEEEEC----CCCccHHHHHHHHHHHHHHhcCC
Confidence 477888777 45999999999999777323343
No 491
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=34.95 E-value=27 Score=35.84 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++|+++|. .|.||||.+--|++.+
T Consensus 3 ~liil~G~----pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGV----PGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcC----CCCCHHHHHHHHHHHC
Confidence 57888874 6999999999988776
No 492
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=34.92 E-value=4.8e+02 Score=26.13 Aligned_cols=27 Identities=52% Similarity=0.492 Sum_probs=24.3
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.=|.||||+|..|+.+| ++.|+++.+.
T Consensus 9 KGGvGKTT~~~nLA~~L-a~~G~kVlli 35 (270)
T cd02040 9 KGGIGKSTTTQNLSAAL-AEMGKKVMIV 35 (270)
T ss_pred CCcCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 88999999999999999 5889987755
No 493
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=34.82 E-value=29 Score=33.94 Aligned_cols=34 Identities=24% Similarity=0.357 Sum_probs=23.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+++=++++| |.|.|||.++.+++..+. .-|+++.
T Consensus 46 ~~~~l~l~G----~~G~GKThLa~ai~~~~~-~~g~~v~ 79 (178)
T PF01695_consen 46 NGENLILYG----PPGTGKTHLAVAIANEAI-RKGYSVL 79 (178)
T ss_dssp C--EEEEEE----STTSSHHHHHHHHHHHHH-HTT--EE
T ss_pred cCeEEEEEh----hHhHHHHHHHHHHHHHhc-cCCccee
Confidence 345577777 459999999999999884 5677653
No 494
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=34.62 E-value=6.7e+02 Score=27.72 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHhHHHHHHHHHhh-c-CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccc----cCccch-----hHHHHHH
Q 006673 435 GCVNLARHIANTKA-Y-GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA----HGGKGA-----VDLGIAV 503 (636)
Q Consensus 435 G~~NL~kHIeNi~~-f-GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa----~GGeGa-----~eLA~aV 503 (636)
|+....++++.+++ + ..|++|-||- +.+++|+....+..++.|+..+.++=..- ..|.|+ .++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~p~i~si~g--~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i 159 (420)
T PRK08318 82 PLEVNLREIRRVKRDYPDRALIASIMV--ECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMY 159 (420)
T ss_pred CHHHHHHHHHHHHhhCCCceEEEEecc--CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHH
Confidence 34434456666654 4 5888888873 33578888787777888876344432211 112222 2455566
Q ss_pred HHHhhcC---CCCCcccCCCCCCHHHHHHHHHH---HhCCCceee
Q 006673 504 QRACENV---TQPLKFLYPLDVSIKEKIDTIAR---SYGASGVEY 542 (636)
Q Consensus 504 v~a~e~~---~s~fk~LY~~~~~L~eKIetIA~---IYGA~~V~~ 542 (636)
++.+.+. |=-.|.- +.... +..+|+ -.||++|.+
T Consensus 160 ~~~v~~~~~~Pv~vKl~-p~~~~----~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 160 TRWVKRGSRLPVIVKLT-PNITD----IREPARAAKRGGADAVSL 199 (420)
T ss_pred HHHHHhccCCcEEEEcC-CCccc----HHHHHHHHHHCCCCEEEE
Confidence 6655431 1113332 11112 445555 578898884
No 495
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=34.57 E-value=21 Score=35.64 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=19.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++|||- +.|.||||+..-|+|+|+
T Consensus 4 ~IvLiG-----~mGaGKSTIGr~LAk~L~ 27 (172)
T COG0703 4 NIVLIG-----FMGAGKSTIGRALAKALN 27 (172)
T ss_pred cEEEEc-----CCCCCHhHHHHHHHHHcC
Confidence 466665 459999999999999995
No 496
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=34.56 E-value=2.2e+02 Score=26.55 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=20.7
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCC
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT 462 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t 462 (636)
..+.+.+++.+..+.+++. ..+.++|+ +.-++.
T Consensus 84 ~~~~~~~~~~~~~~i~~i~---~~~~~vil-~~~~~~ 116 (185)
T cd01832 84 GTDPDTYRADLEEAVRRLR---AAGARVVV-FTIPDP 116 (185)
T ss_pred CCCHHHHHHHHHHHHHHHH---hCCCEEEE-ecCCCc
Confidence 3566778876666655555 66776554 666554
No 497
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=34.49 E-value=28 Score=39.80 Aligned_cols=28 Identities=36% Similarity=0.560 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++-.+|+|.+. .|.||||++-.|+..|+
T Consensus 253 k~p~vil~~G~----~G~GKSt~a~~LA~~lg 280 (475)
T PRK12337 253 PRPLHVLIGGV----SGVGKSVLASALAYRLG 280 (475)
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 34679999986 49999999999998874
No 498
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=34.48 E-value=21 Score=31.96 Aligned_cols=23 Identities=39% Similarity=0.655 Sum_probs=15.9
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
||++.| |.|.||||.+--|.+.+
T Consensus 1 lii~~G----~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCG----PPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEE----STTSSHHHHHHHHHHHS
T ss_pred CEEEEC----CCCCCHHHHHHHHHHHC
Confidence 455655 46899999877765555
No 499
>PRK00049 elongation factor Tu; Reviewed
Probab=34.36 E-value=1.9e+02 Score=31.87 Aligned_cols=69 Identities=20% Similarity=0.114 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhcCCcEE-EEecCCCCCCHHH-HH----HHHHHHHHcC-----CCeEEEcCccc--------cCccchhH
Q 006673 438 NLARHIANTKAYGANVV-VAVNMFATDSKAE-LN----AVRNAAMAAG-----AFDAVVCSHHA--------HGGKGAVD 498 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvV-VAINrF~tDT~aE-I~----~v~e~c~~~G-----v~~~avs~~wa--------~GGeGa~e 498 (636)
....|++-++.+|+|++ |++|+..-=+++| .+ .++++.+..| ++ ++..+.+. +..+|..+
T Consensus 115 qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~-iv~iSa~~g~~~~~~~~w~~~~~~ 193 (396)
T PRK00049 115 QTREHILLARQVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTP-IIRGSALKALEGDDDEEWEKKILE 193 (396)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCc-EEEeecccccCCCCcccccccHHH
Confidence 46679999999999986 7999986533333 22 3444544444 33 44444432 12334556
Q ss_pred HHHHHHHHh
Q 006673 499 LGIAVQRAC 507 (636)
Q Consensus 499 LA~aVv~a~ 507 (636)
|-+++.+.+
T Consensus 194 ll~~l~~~~ 202 (396)
T PRK00049 194 LMDAVDSYI 202 (396)
T ss_pred HHHHHHhcC
Confidence 666655543
No 500
>PRK05973 replicative DNA helicase; Provisional
Probab=34.14 E-value=53 Score=34.13 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=30.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE-EEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV-VTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~-~~~lReP 112 (636)
++|.++||+| +-|.||||.+.=++.... +-|+++ +..+=|+
T Consensus 62 ~~Gsl~LIaG----~PG~GKT~lalqfa~~~a-~~Ge~vlyfSlEes 103 (237)
T PRK05973 62 KPGDLVLLGA----RPGHGKTLLGLELAVEAM-KSGRTGVFFTLEYT 103 (237)
T ss_pred CCCCEEEEEe----CCCCCHHHHHHHHHHHHH-hcCCeEEEEEEeCC
Confidence 6799999999 469999999998776552 448765 5555544
Done!