Query 006673
Match_columns 636
No_of_seqs 200 out of 1091
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:54:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006673.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006673hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3do6_A Formate--tetrahydrofola 100.0 8E-269 3E-273 2117.4 46.6 541 28-636 2-543 (543)
2 3pzx_A Formate--tetrahydrofola 100.0 8E-258 3E-262 2042.6 41.3 555 14-636 2-557 (557)
3 2eo2_A Adult MALE hypothalamus 100.0 3.6E-29 1.2E-33 207.5 5.1 70 162-232 2-71 (71)
4 3cio_A ETK, tyrosine-protein k 97.0 0.0004 1.4E-08 70.2 3.7 52 67-122 102-156 (299)
5 3bfv_A CAPA1, CAPB2, membrane 96.9 0.00054 1.9E-08 68.2 3.9 52 67-122 80-134 (271)
6 3la6_A Tyrosine-protein kinase 96.5 0.0012 3.9E-08 66.7 3.3 52 67-122 90-144 (286)
7 3zq6_A Putative arsenical pump 95.5 0.0088 3E-07 60.7 4.3 53 67-123 10-65 (324)
8 1hyq_A MIND, cell division inh 95.4 0.0079 2.7E-07 57.7 3.4 50 69-122 2-54 (263)
9 3q9l_A Septum site-determining 95.2 0.0082 2.8E-07 57.1 2.9 50 69-122 2-54 (260)
10 3ea0_A ATPase, para family; al 94.8 0.024 8.1E-07 53.4 4.7 38 67-108 2-40 (245)
11 1g3q_A MIND ATPase, cell divis 94.6 0.027 9.4E-07 52.8 4.4 49 69-121 2-53 (237)
12 3end_A Light-independent proto 94.4 0.031 1.1E-06 55.3 4.5 40 67-111 39-78 (307)
13 1byi_A Dethiobiotin synthase; 94.3 0.021 7.2E-07 53.3 3.1 34 70-107 2-35 (224)
14 2woo_A ATPase GET3; tail-ancho 94.3 0.017 5.9E-07 58.8 2.7 51 68-123 17-70 (329)
15 2ph1_A Nucleotide-binding prot 94.3 0.039 1.4E-06 53.5 4.9 38 67-108 16-53 (262)
16 1wcv_1 SOJ, segregation protei 94.0 0.03 1E-06 54.1 3.4 38 67-108 4-41 (257)
17 3k9g_A PF-32 protein; ssgcid, 93.9 0.042 1.4E-06 53.0 4.3 37 67-108 25-61 (267)
18 4tmk_A Protein (thymidylate ki 93.8 0.048 1.6E-06 52.9 4.4 41 68-113 2-42 (213)
19 2woj_A ATPase GET3; tail-ancho 93.7 0.032 1.1E-06 57.8 3.3 51 68-123 16-71 (354)
20 3lv8_A DTMP kinase, thymidylat 93.3 0.061 2.1E-06 53.2 4.4 42 67-113 25-66 (236)
21 2wwf_A Thymidilate kinase, put 93.3 0.075 2.6E-06 48.9 4.7 47 67-119 8-54 (212)
22 3ug7_A Arsenical pump-driving 93.2 0.074 2.5E-06 54.7 4.9 53 67-123 23-77 (349)
23 3ld9_A DTMP kinase, thymidylat 92.8 0.066 2.3E-06 52.6 3.7 44 66-114 18-62 (223)
24 1nn5_A Similar to deoxythymidy 92.4 0.13 4.5E-06 47.2 5.0 43 67-115 7-49 (215)
25 3igf_A ALL4481 protein; two-do 92.1 0.035 1.2E-06 58.5 0.8 54 70-132 3-58 (374)
26 2oze_A ORF delta'; para, walke 92.0 0.12 4.2E-06 50.6 4.5 39 68-108 33-71 (298)
27 3fkq_A NTRC-like two-domain pr 91.9 0.12 4.1E-06 53.3 4.6 51 67-121 141-193 (373)
28 4dzz_A Plasmid partitioning pr 91.9 0.12 4E-06 47.2 4.0 35 70-108 2-36 (206)
29 4edh_A DTMP kinase, thymidylat 91.5 0.15 5.3E-06 49.1 4.6 40 68-113 5-44 (213)
30 1cp2_A CP2, nitrogenase iron p 91.2 0.14 4.8E-06 49.1 3.9 104 435-553 157-264 (269)
31 3iqw_A Tail-anchored protein t 91.0 0.16 5.6E-06 52.4 4.4 48 70-122 17-66 (334)
32 1ihu_A Arsenical pump-driving 91.0 0.098 3.4E-06 57.0 2.9 50 68-123 7-59 (589)
33 3io3_A DEHA2D07832P; chaperone 90.9 0.18 6.2E-06 52.4 4.7 52 67-123 16-71 (348)
34 3cwq_A Para family chromosome 90.9 0.19 6.5E-06 47.5 4.4 34 70-108 1-34 (209)
35 3fwy_A Light-independent proto 90.9 0.21 7.1E-06 51.1 5.0 47 68-119 47-93 (314)
36 2afh_E Nitrogenase iron protei 90.9 0.15 5.3E-06 49.8 3.9 115 435-565 160-278 (289)
37 3ez2_A Plasmid partition prote 90.7 0.22 7.4E-06 51.4 5.0 39 67-108 106-149 (398)
38 3kjh_A CO dehydrogenase/acetyl 90.6 0.095 3.3E-06 48.9 2.1 41 81-122 8-50 (254)
39 3of5_A Dethiobiotin synthetase 90.5 0.11 3.9E-06 50.5 2.6 37 70-112 5-41 (228)
40 3qxc_A Dethiobiotin synthetase 90.4 0.2 6.7E-06 49.8 4.2 37 67-107 19-55 (242)
41 3ez9_A Para; DNA binding, wing 90.4 0.17 5.8E-06 52.5 3.8 39 67-108 109-152 (403)
42 3v9p_A DTMP kinase, thymidylat 90.0 0.25 8.4E-06 48.5 4.5 43 67-115 23-69 (227)
43 2xj4_A MIPZ; replication, cell 89.8 0.22 7.6E-06 49.1 4.0 36 69-108 4-39 (286)
44 3fgn_A Dethiobiotin synthetase 89.2 0.16 5.5E-06 50.6 2.6 43 60-107 18-60 (251)
45 2xxa_A Signal recognition part 89.1 0.29 1E-05 52.4 4.6 36 68-108 99-135 (433)
46 1zu4_A FTSY; GTPase, signal re 89.1 0.3 1E-05 50.1 4.5 37 67-108 103-139 (320)
47 2plr_A DTMP kinase, probable t 88.3 0.41 1.4E-05 43.5 4.4 37 69-112 4-40 (213)
48 3nav_A Tryptophan synthase alp 86.9 1.1 3.8E-05 45.4 7.0 143 409-565 46-213 (271)
49 2efe_B Small GTP-binding prote 86.6 1.2 4.1E-05 39.0 6.3 69 437-508 101-174 (181)
50 2z0h_A DTMP kinase, thymidylat 86.6 0.55 1.9E-05 42.4 4.2 37 71-113 2-38 (197)
51 2qor_A Guanylate kinase; phosp 86.4 0.42 1.4E-05 44.5 3.3 47 67-117 10-56 (204)
52 2px0_A Flagellar biosynthesis 86.2 0.68 2.3E-05 46.8 5.0 38 67-108 103-140 (296)
53 3vni_A Xylose isomerase domain 86.0 8.5 0.00029 37.0 12.5 135 424-566 75-245 (294)
54 3pg5_A Uncharacterized protein 85.5 0.39 1.3E-05 49.5 2.9 34 71-108 3-36 (361)
55 1vma_A Cell division protein F 85.5 0.65 2.2E-05 47.5 4.5 37 67-108 102-138 (306)
56 3tmk_A Thymidylate kinase; pho 85.5 0.63 2.1E-05 45.3 4.2 37 68-113 4-40 (216)
57 2yvu_A Probable adenylyl-sulfa 84.9 0.91 3.1E-05 41.2 4.8 41 61-106 5-45 (186)
58 3kl4_A SRP54, signal recogniti 84.5 0.68 2.3E-05 49.8 4.3 35 68-107 96-130 (433)
59 1xjc_A MOBB protein homolog; s 84.1 1 3.4E-05 42.6 4.8 38 70-112 5-42 (169)
60 3a1s_A Iron(II) transport prot 84.1 0.72 2.4E-05 45.3 3.9 87 443-534 103-193 (258)
61 4hlc_A DTMP kinase, thymidylat 83.9 0.83 2.8E-05 43.7 4.2 38 69-113 2-39 (205)
62 3t1o_A Gliding protein MGLA; G 83.5 3.2 0.00011 36.6 7.6 73 433-508 116-191 (198)
63 3dm5_A SRP54, signal recogniti 83.2 0.9 3.1E-05 49.2 4.5 36 68-108 99-134 (443)
64 3iev_A GTP-binding protein ERA 83.0 5 0.00017 40.2 9.6 66 442-510 114-183 (308)
65 2r8r_A Sensor protein; KDPD, P 82.6 1.4 4.8E-05 43.9 5.4 42 67-112 3-44 (228)
66 2b8t_A Thymidine kinase; deoxy 82.5 1.1 3.6E-05 44.1 4.4 44 67-117 10-53 (223)
67 2ocp_A DGK, deoxyguanosine kin 82.2 0.81 2.8E-05 43.6 3.4 39 68-116 1-39 (241)
68 2yc2_C IFT27, small RAB-relate 82.1 2.2 7.4E-05 38.3 6.0 71 436-508 112-191 (208)
69 2wjg_A FEOB, ferrous iron tran 82.0 0.88 3E-05 40.4 3.3 70 438-510 100-170 (188)
70 3iby_A Ferrous iron transport 82.0 1.5 5.1E-05 43.0 5.3 81 443-533 103-184 (256)
71 3tau_A Guanylate kinase, GMP k 81.8 0.79 2.7E-05 43.0 3.1 45 67-115 6-50 (208)
72 2ce2_X GTPase HRAS; signaling 81.7 4.6 0.00016 34.1 7.6 57 449-508 107-164 (166)
73 3c5h_A Glucocorticoid receptor 81.2 5 0.00017 38.8 8.6 57 449-508 197-254 (255)
74 4eaq_A DTMP kinase, thymidylat 81.1 1.3 4.4E-05 42.8 4.4 43 67-116 24-66 (229)
75 2hk0_A D-psicose 3-epimerase; 81.1 8.5 0.00029 37.6 10.3 134 424-565 94-263 (309)
76 3qxb_A Putative xylose isomera 80.9 8.5 0.00029 37.9 10.3 142 424-566 101-286 (316)
77 2ekc_A AQ_1548, tryptophan syn 80.7 1.6 5.3E-05 43.5 4.9 143 409-565 43-211 (262)
78 1ls1_A Signal recognition part 80.7 1.2 4.3E-05 44.7 4.3 36 68-108 97-132 (295)
79 2obn_A Hypothetical protein; s 80.3 3.8 0.00013 43.1 7.9 94 390-504 251-347 (349)
80 2gf9_A RAS-related protein RAB 79.9 2.2 7.4E-05 38.2 5.1 69 437-508 111-184 (189)
81 1j8m_F SRP54, signal recogniti 79.8 1.6 5.4E-05 44.2 4.7 35 69-108 98-132 (297)
82 1qhx_A CPT, protein (chloramph 79.7 0.96 3.3E-05 40.4 2.8 26 69-98 3-28 (178)
83 2fu5_C RAS-related protein RAB 79.7 2.7 9.4E-05 37.0 5.7 70 436-508 96-170 (183)
84 2ffh_A Protein (FFH); SRP54, s 79.5 1.5 5.2E-05 47.0 4.7 35 68-107 97-131 (425)
85 1g16_A RAS-related protein SEC 78.9 4.1 0.00014 35.0 6.5 69 438-509 93-165 (170)
86 3kws_A Putative sugar isomeras 78.7 16 0.00053 35.2 11.2 107 424-533 91-218 (287)
87 3hjn_A DTMP kinase, thymidylat 78.7 1 3.6E-05 42.6 2.8 30 82-113 9-38 (197)
88 3bdk_A D-mannonate dehydratase 78.5 5.1 0.00017 42.5 8.3 124 432-559 99-324 (386)
89 3kkq_A RAS-related protein M-R 78.5 6.4 0.00022 34.6 7.7 59 447-508 120-181 (183)
90 2v3c_C SRP54, signal recogniti 78.5 1.3 4.6E-05 47.3 3.9 35 69-108 99-133 (432)
91 2nzj_A GTP-binding protein REM 78.1 4.9 0.00017 34.7 6.8 70 436-508 93-168 (175)
92 1ega_A Protein (GTP-binding pr 78.1 11 0.00038 37.6 10.3 64 444-509 110-175 (301)
93 2v54_A DTMP kinase, thymidylat 77.8 1.4 4.7E-05 40.1 3.2 41 68-116 3-43 (204)
94 2pbr_A DTMP kinase, thymidylat 77.6 2.4 8.1E-05 37.9 4.7 37 71-113 2-38 (195)
95 3tkl_A RAS-related protein RAB 77.5 5.1 0.00017 35.5 6.8 69 438-509 106-179 (196)
96 2qw5_A Xylose isomerase-like T 77.5 6 0.00021 39.3 8.1 129 385-532 73-238 (335)
97 1ujp_A Tryptophan synthase alp 77.5 0.77 2.6E-05 46.4 1.6 129 424-566 62-208 (271)
98 1z0f_A RAB14, member RAS oncog 77.2 3.9 0.00013 35.4 5.8 66 439-507 109-176 (179)
99 1xx6_A Thymidine kinase; NESG, 77.0 2.1 7.4E-05 40.7 4.5 46 67-119 6-51 (191)
100 3c5c_A RAS-like protein 12; GD 77.0 3.3 0.00011 37.4 5.5 71 436-508 107-185 (187)
101 3a4m_A L-seryl-tRNA(SEC) kinas 76.8 1.8 6E-05 42.2 3.9 34 68-106 3-36 (260)
102 3q72_A GTP-binding protein RAD 76.5 6.5 0.00022 33.8 7.0 70 436-508 88-163 (166)
103 1np6_A Molybdopterin-guanine d 76.5 2.6 9E-05 39.5 4.8 38 70-112 7-44 (174)
104 2rhm_A Putative kinase; P-loop 76.3 1.6 5.5E-05 39.2 3.2 27 67-97 3-29 (193)
105 2orw_A Thymidine kinase; TMTK, 76.3 2.4 8.1E-05 39.6 4.5 43 69-118 3-45 (184)
106 1c1y_A RAS-related protein RAP 76.2 6.8 0.00023 33.5 7.0 56 449-507 107-165 (167)
107 3tva_A Xylose isomerase domain 76.2 6.2 0.00021 38.0 7.5 82 430-519 95-184 (290)
108 1a7j_A Phosphoribulokinase; tr 76.0 2.1 7.3E-05 42.9 4.3 27 68-98 4-30 (290)
109 1r2q_A RAS-related protein RAB 75.8 3.6 0.00012 35.2 5.2 69 436-507 94-167 (170)
110 1kao_A RAP2A; GTP-binding prot 75.7 5 0.00017 34.1 6.0 58 448-508 106-165 (167)
111 1u8z_A RAS-related protein RAL 75.7 5.4 0.00018 33.9 6.2 57 449-508 108-166 (168)
112 3clv_A RAB5 protein, putative; 75.6 6.3 0.00021 34.5 6.8 69 437-508 133-203 (208)
113 2g6b_A RAS-related protein RAB 75.5 7.9 0.00027 33.7 7.4 60 447-509 113-174 (180)
114 1z06_A RAS-related protein RAB 75.4 3.7 0.00013 36.7 5.3 60 448-507 125-186 (189)
115 2a9k_A RAS-related protein RAL 75.2 4.5 0.00015 35.3 5.7 57 449-508 122-180 (187)
116 3bc1_A RAS-related protein RAB 75.1 5.3 0.00018 35.0 6.2 68 438-508 111-184 (195)
117 3sjy_A Translation initiation 74.3 8.9 0.00031 39.8 8.6 68 438-508 116-191 (403)
118 2j37_W Signal recognition part 74.2 2.2 7.7E-05 46.7 4.2 35 69-108 101-135 (504)
119 1kht_A Adenylate kinase; phosp 74.2 1.9 6.6E-05 38.4 3.2 26 69-98 3-28 (192)
120 3con_A GTPase NRAS; structural 73.6 7.4 0.00025 34.5 6.9 58 449-509 125-183 (190)
121 1kgd_A CASK, peripheral plasma 73.6 2.3 8E-05 38.8 3.6 44 68-115 4-47 (180)
122 1gtv_A TMK, thymidylate kinase 73.5 1.2 4.1E-05 40.8 1.7 38 70-113 1-38 (214)
123 1i60_A IOLI protein; beta barr 73.4 14 0.00046 34.9 9.0 91 427-520 74-175 (278)
124 3t5g_A GTP-binding protein RHE 73.4 6.6 0.00023 34.4 6.4 60 447-509 108-169 (181)
125 2atx_A Small GTP binding prote 73.4 13 0.00046 33.0 8.5 69 437-507 106-191 (194)
126 1ihu_A Arsenical pump-driving 73.3 2.6 8.8E-05 45.9 4.4 49 68-120 325-375 (589)
127 3trf_A Shikimate kinase, SK; a 73.3 1.9 6.5E-05 38.7 2.9 26 68-97 4-29 (185)
128 1qop_A Tryptophan synthase alp 73.3 8.7 0.0003 38.1 7.9 143 409-565 43-210 (268)
129 1qtw_A Endonuclease IV; DNA re 73.2 17 0.00058 34.5 9.7 95 424-520 76-180 (285)
130 1yrb_A ATP(GTP)binding protein 73.2 2.3 7.9E-05 40.3 3.6 43 68-113 10-52 (262)
131 2fg5_A RAB-22B, RAS-related pr 73.2 3.7 0.00013 36.9 4.8 68 438-508 113-185 (192)
132 1wms_A RAB-9, RAB9, RAS-relate 73.1 9.1 0.00031 33.2 7.2 58 448-508 114-173 (177)
133 2bov_A RAla, RAS-related prote 72.9 7.8 0.00027 34.6 6.8 57 449-508 118-176 (206)
134 1e6c_A Shikimate kinase; phosp 72.9 1.8 6E-05 38.3 2.5 25 70-98 3-27 (173)
135 2j9r_A Thymidine kinase; TK1, 72.6 3.5 0.00012 40.6 4.8 46 67-119 26-71 (214)
136 2vli_A Antibiotic resistance p 72.6 1.8 6.2E-05 38.6 2.6 27 68-98 4-30 (183)
137 2a5j_A RAS-related protein RAB 72.3 5.6 0.00019 35.6 5.8 69 437-508 110-183 (191)
138 3cph_A RAS-related protein SEC 72.3 6.8 0.00023 35.3 6.3 68 438-508 110-181 (213)
139 1ky3_A GTP-binding protein YPT 71.8 15 0.00051 31.8 8.2 58 448-508 116-177 (182)
140 2fn4_A P23, RAS-related protei 71.8 6.6 0.00023 34.0 5.9 60 447-509 111-172 (181)
141 3e1s_A Exodeoxyribonuclease V, 71.8 3 0.0001 46.0 4.6 36 68-108 203-238 (574)
142 1x3s_A RAS-related protein RAB 71.5 11 0.00039 33.1 7.5 71 436-509 103-178 (195)
143 3j2k_7 ERF3, eukaryotic polype 71.4 7.8 0.00027 41.0 7.5 61 438-500 142-216 (439)
144 2y8e_A RAB-protein 6, GH09086P 71.3 5.2 0.00018 34.6 5.1 57 448-507 117-175 (179)
145 1nks_A Adenylate kinase; therm 71.2 3.6 0.00012 36.6 4.2 30 70-104 2-31 (194)
146 2bcg_Y Protein YP2, GTP-bindin 71.2 8.3 0.00028 34.8 6.7 63 443-508 106-170 (206)
147 3q85_A GTP-binding protein REM 71.1 7.7 0.00026 33.4 6.2 70 436-508 91-166 (169)
148 1z2a_A RAS-related protein RAB 71.1 6.9 0.00023 33.5 5.8 67 438-507 95-165 (168)
149 3kb2_A SPBC2 prophage-derived 71.1 2.3 8E-05 37.2 2.9 23 71-97 3-25 (173)
150 3cpj_B GTP-binding protein YPT 71.0 4.6 0.00016 37.4 5.0 70 437-509 102-176 (223)
151 3lnc_A Guanylate kinase, GMP k 70.9 2.2 7.4E-05 40.3 2.8 45 67-116 25-70 (231)
152 3cm0_A Adenylate kinase; ATP-b 70.8 2.1 7.2E-05 38.4 2.6 26 68-97 3-28 (186)
153 3pqc_A Probable GTP-binding pr 70.8 11 0.00038 33.1 7.3 64 443-508 126-193 (195)
154 1lvg_A Guanylate kinase, GMP k 70.7 2.6 9E-05 39.3 3.3 45 68-116 3-47 (198)
155 1g5t_A COB(I)alamin adenosyltr 70.6 3.9 0.00013 39.8 4.5 36 67-108 27-62 (196)
156 3uie_A Adenylyl-sulfate kinase 70.5 2.7 9.4E-05 38.8 3.4 33 67-104 23-55 (200)
157 3a00_A Guanylate kinase, GMP k 70.5 2.6 8.7E-05 38.6 3.1 43 70-116 2-44 (186)
158 2pez_A Bifunctional 3'-phospho 70.5 3.4 0.00012 37.2 3.9 35 67-106 3-37 (179)
159 3vaa_A Shikimate kinase, SK; s 70.5 2.7 9.2E-05 38.8 3.3 27 67-97 23-49 (199)
160 3jvv_A Twitching mobility prot 69.7 3.3 0.00011 43.1 4.1 41 68-113 122-162 (356)
161 2f7s_A C25KG, RAS-related prot 69.6 9.4 0.00032 34.8 6.7 70 436-508 123-198 (217)
162 2e87_A Hypothetical protein PH 69.5 19 0.00066 36.5 9.7 57 450-509 280-336 (357)
163 3ney_A 55 kDa erythrocyte memb 69.4 3.5 0.00012 39.7 3.9 45 68-116 18-62 (197)
164 4dhe_A Probable GTP-binding pr 69.1 19 0.00065 32.8 8.7 67 442-509 136-211 (223)
165 1zbd_A Rabphilin-3A; G protein 68.6 8.2 0.00028 34.7 6.0 69 437-508 97-170 (203)
166 1z08_A RAS-related protein RAB 68.5 7.8 0.00027 33.3 5.6 57 448-507 109-167 (170)
167 1r5b_A Eukaryotic peptide chai 68.4 10 0.00035 40.5 7.6 43 439-481 169-221 (467)
168 2c95_A Adenylate kinase 1; tra 68.4 3.2 0.00011 37.3 3.2 26 68-97 8-33 (196)
169 4dsu_A GTPase KRAS, isoform 2B 68.3 15 0.00052 32.0 7.6 58 448-508 107-165 (189)
170 3lmz_A Putative sugar isomeras 68.0 4.6 0.00016 38.5 4.4 90 436-533 88-183 (257)
171 1z0j_A RAB-22, RAS-related pro 67.9 12 0.00041 32.0 6.7 67 438-507 96-167 (170)
172 3iij_A Coilin-interacting nucl 67.7 3 0.0001 37.5 2.9 26 68-97 10-35 (180)
173 1m7g_A Adenylylsulfate kinase; 67.5 4.8 0.00016 37.5 4.3 36 67-106 23-58 (211)
174 3dz8_A RAS-related protein RAB 67.3 9.9 0.00034 34.0 6.3 58 449-509 127-186 (191)
175 4djt_A GTP-binding nuclear pro 67.2 14 0.00049 33.6 7.4 66 441-509 108-175 (218)
176 2gco_A H9, RHO-related GTP-bin 67.2 20 0.00067 32.5 8.3 65 441-507 118-198 (201)
177 1wb1_A Translation elongation 67.1 12 0.00041 40.2 7.8 67 439-508 114-188 (482)
178 2j41_A Guanylate kinase; GMP, 66.9 3.7 0.00013 37.2 3.4 27 67-97 4-30 (207)
179 3k53_A Ferrous iron transport 66.8 12 0.00043 36.1 7.3 88 445-537 103-195 (271)
180 2j0v_A RAC-like GTP-binding pr 66.7 10 0.00036 34.3 6.3 72 436-509 96-180 (212)
181 1tz9_A Mannonate dehydratase; 66.7 11 0.00039 38.3 7.3 29 432-461 90-118 (367)
182 1of1_A Thymidine kinase; trans 66.7 2.4 8.3E-05 45.0 2.4 123 425-553 228-364 (376)
183 1ojl_A Transcriptional regulat 66.7 1.3 4.5E-05 44.4 0.3 153 69-245 25-227 (304)
184 2oil_A CATX-8, RAS-related pro 66.5 8.7 0.0003 34.2 5.7 69 437-508 114-187 (193)
185 3c8f_A Pyruvate formate-lyase 66.4 20 0.00069 33.1 8.3 56 438-493 148-206 (245)
186 3i8s_A Ferrous iron transport 66.4 2.6 8.8E-05 41.5 2.3 85 443-533 105-190 (274)
187 2p5s_A RAS and EF-hand domain 66.3 11 0.00039 33.9 6.5 63 443-508 126-196 (199)
188 4eun_A Thermoresistant glucoki 66.1 3.7 0.00013 37.9 3.3 27 67-97 27-53 (200)
189 1knq_A Gluconate kinase; ALFA/ 66.1 3.9 0.00013 36.4 3.3 27 67-97 6-32 (175)
190 2x7v_A Probable endonuclease 4 66.0 23 0.00077 33.7 8.8 115 385-519 55-178 (287)
191 1rz3_A Hypothetical protein rb 65.5 5.9 0.0002 36.7 4.5 28 67-98 20-47 (201)
192 2bme_A RAB4A, RAS-related prot 65.5 7.9 0.00027 34.0 5.1 65 441-508 106-172 (186)
193 3ug7_A Arsenical pump-driving 65.5 13 0.00043 38.1 7.4 84 437-531 252-346 (349)
194 2qmh_A HPR kinase/phosphorylas 65.5 2.6 8.9E-05 41.6 2.2 40 68-111 33-72 (205)
195 3hp4_A GDSL-esterase; psychrot 65.3 33 0.0011 30.1 9.2 108 347-481 24-139 (185)
196 2il1_A RAB12; G-protein, GDP, 65.0 8 0.00027 34.8 5.2 63 443-508 124-189 (192)
197 1jny_A EF-1-alpha, elongation 65.0 7.9 0.00027 40.7 5.9 59 437-497 130-201 (435)
198 3ec2_A DNA replication protein 64.9 3.7 0.00013 36.9 2.9 34 67-104 36-69 (180)
199 1osn_A Thymidine kinase, VZV-T 64.9 2.5 8.5E-05 44.3 2.0 39 67-112 10-49 (341)
200 3b1v_A Ferrous iron uptake tra 64.9 4.4 0.00015 40.3 3.7 86 444-534 101-189 (272)
201 3cbq_A GTP-binding protein REM 64.8 16 0.00054 33.3 7.2 71 436-509 112-188 (195)
202 3bos_A Putative DNA replicatio 64.8 5.6 0.00019 36.3 4.2 34 66-104 49-82 (242)
203 2hxs_A RAB-26, RAS-related pro 64.8 8.4 0.00029 33.5 5.1 57 450-509 114-173 (178)
204 1kag_A SKI, shikimate kinase I 64.4 3.4 0.00011 36.6 2.5 25 69-97 4-28 (173)
205 1gvn_B Zeta; postsegregational 64.2 4.3 0.00015 40.5 3.5 27 67-97 31-57 (287)
206 2o52_A RAS-related protein RAB 64.1 7.1 0.00024 35.5 4.7 59 447-508 127-187 (200)
207 3cqj_A L-ribulose-5-phosphate 63.8 29 0.00098 33.5 9.2 104 426-533 97-216 (295)
208 1tev_A UMP-CMP kinase; ploop, 63.7 3.8 0.00013 36.5 2.7 25 69-97 3-27 (196)
209 1lnz_A SPO0B-associated GTP-bi 63.6 20 0.00067 37.0 8.4 78 438-522 257-341 (342)
210 1y63_A LMAJ004144AAA protein; 63.5 4 0.00014 37.2 2.9 26 67-96 8-33 (184)
211 2qul_A D-tagatose 3-epimerase; 63.4 22 0.00074 33.9 8.1 94 424-520 75-186 (290)
212 3ihw_A Centg3; RAS, centaurin, 63.1 24 0.00084 31.6 8.0 70 436-508 101-179 (184)
213 3can_A Pyruvate-formate lyase- 63.0 16 0.00055 33.1 6.9 57 437-493 79-139 (182)
214 2atv_A RERG, RAS-like estrogen 63.0 9.1 0.00031 34.4 5.2 57 449-508 131-190 (196)
215 2p67_A LAO/AO transport system 62.9 7.9 0.00027 39.4 5.3 42 67-113 54-95 (341)
216 3bwd_D RAC-like GTP-binding pr 62.8 14 0.00049 32.1 6.3 64 442-507 102-179 (182)
217 3u0h_A Xylose isomerase domain 62.7 16 0.00053 34.6 7.0 85 431-519 78-179 (281)
218 3tw8_B RAS-related protein RAB 62.5 16 0.00054 31.6 6.5 68 438-508 99-170 (181)
219 3a8t_A Adenylate isopentenyltr 62.5 2.6 8.9E-05 44.2 1.6 28 67-98 38-65 (339)
220 1e2k_A Thymidine kinase; trans 62.5 2.7 9.2E-05 43.8 1.7 39 67-113 2-40 (331)
221 2elf_A Protein translation elo 62.4 13 0.00044 38.6 6.8 70 438-508 99-179 (370)
222 3tr0_A Guanylate kinase, GMP k 62.2 5.5 0.00019 36.1 3.5 27 67-97 5-31 (205)
223 1qf9_A UMP/CMP kinase, protein 62.2 5.3 0.00018 35.5 3.4 26 68-97 5-30 (194)
224 1ukz_A Uridylate kinase; trans 62.2 4.2 0.00014 37.1 2.8 27 67-97 13-39 (203)
225 3avx_A Elongation factor TS, e 62.1 21 0.00071 43.6 9.3 99 377-507 368-484 (1289)
226 3ayv_A Putative uncharacterize 62.1 44 0.0015 31.4 9.9 89 423-519 62-162 (254)
227 2yv5_A YJEQ protein; hydrolase 62.0 17 0.0006 36.3 7.5 61 438-501 98-161 (302)
228 2hup_A RAS-related protein RAB 61.7 20 0.00068 32.6 7.3 71 437-509 118-193 (201)
229 3p32_A Probable GTPase RV1496/ 61.6 8.8 0.0003 39.2 5.3 42 67-113 77-118 (355)
230 2dr3_A UPF0273 protein PH0284; 61.6 8.6 0.00029 35.6 4.8 35 67-106 21-55 (247)
231 1zp6_A Hypothetical protein AT 61.2 4.5 0.00015 36.3 2.8 25 67-95 7-31 (191)
232 1zj6_A ADP-ribosylation factor 60.9 18 0.00062 32.1 6.7 69 438-509 101-178 (187)
233 2bwj_A Adenylate kinase 5; pho 60.5 5.3 0.00018 35.9 3.1 26 68-97 11-36 (199)
234 2fv8_A H6, RHO-related GTP-bin 60.4 26 0.00089 31.8 7.8 65 442-508 119-199 (207)
235 2gf0_A GTP-binding protein DI- 60.4 13 0.00046 32.9 5.7 58 449-509 113-171 (199)
236 2h57_A ADP-ribosylation factor 60.4 23 0.00077 31.5 7.2 69 437-508 107-186 (190)
237 2w0m_A SSO2452; RECA, SSPF, un 60.3 8.7 0.0003 34.9 4.6 27 67-97 21-47 (235)
238 3foz_A TRNA delta(2)-isopenten 59.7 4.5 0.00015 42.2 2.8 28 67-98 8-35 (316)
239 2whl_A Beta-mannanase, baman5; 59.6 24 0.00083 34.5 7.9 56 439-495 33-92 (294)
240 2erx_A GTP-binding protein DI- 59.6 7.6 0.00026 33.2 3.8 58 449-509 108-167 (172)
241 2j1l_A RHO-related GTP-binding 59.5 29 0.001 31.8 8.0 66 442-509 128-209 (214)
242 1u0l_A Probable GTPase ENGC; p 59.4 26 0.00088 34.9 8.2 61 438-501 103-165 (301)
243 4gzl_A RAS-related C3 botulinu 59.4 15 0.0005 33.6 5.9 64 441-506 123-202 (204)
244 3c8u_A Fructokinase; YP_612366 59.4 6.8 0.00023 36.4 3.7 28 67-98 20-47 (208)
245 2cdn_A Adenylate kinase; phosp 59.3 6.3 0.00022 36.1 3.5 27 67-97 18-44 (201)
246 1mh1_A RAC1; GTP-binding, GTPa 59.2 22 0.00075 30.9 6.8 66 442-509 99-180 (186)
247 3izq_1 HBS1P, elongation facto 59.0 26 0.0009 38.9 8.9 96 378-499 255-362 (611)
248 2p5t_B PEZT; postsegregational 59.0 5.1 0.00017 38.7 2.9 27 67-97 30-56 (253)
249 1ek0_A Protein (GTP-binding pr 58.8 8.7 0.0003 32.8 4.1 57 448-507 106-167 (170)
250 2ew1_A RAS-related protein RAB 58.5 13 0.00045 34.2 5.5 59 447-508 128-188 (201)
251 3obe_A Sugar phosphate isomera 58.5 23 0.00078 35.0 7.6 56 433-490 110-173 (305)
252 3gj0_A GTP-binding nuclear pro 58.2 7.2 0.00025 35.8 3.7 70 437-509 104-175 (221)
253 3r7w_A Gtpase1, GTP-binding pr 58.1 20 0.00069 35.7 7.2 81 440-533 103-195 (307)
254 3vnd_A TSA, tryptophan synthas 58.0 47 0.0016 33.4 9.8 143 409-565 44-211 (267)
255 3t61_A Gluconokinase; PSI-biol 58.0 5.9 0.0002 36.3 3.0 26 68-97 17-42 (202)
256 1u94_A RECA protein, recombina 57.8 7.2 0.00025 40.5 4.0 35 67-106 61-95 (356)
257 2zej_A Dardarin, leucine-rich 57.7 16 0.00056 32.5 5.9 73 437-509 97-178 (184)
258 3oes_A GTPase rhebl1; small GT 57.3 13 0.00044 33.6 5.1 69 438-509 113-187 (201)
259 2ze6_A Isopentenyl transferase 56.9 5.3 0.00018 38.9 2.6 24 70-97 2-25 (253)
260 1p6x_A Thymidine kinase; P-loo 56.9 4.1 0.00014 42.5 1.9 125 425-553 186-324 (334)
261 2jaq_A Deoxyguanosine kinase; 56.7 6.5 0.00022 35.3 3.0 24 71-98 2-25 (205)
262 2cxx_A Probable GTP-binding pr 56.6 17 0.00058 31.8 5.7 66 443-509 115-184 (190)
263 4bas_A ADP-ribosylation factor 56.6 37 0.0013 30.0 7.9 57 450-509 127-189 (199)
264 3aal_A Probable endonuclease 4 56.4 37 0.0013 33.1 8.6 95 424-520 80-184 (303)
265 2c78_A Elongation factor TU-A; 55.9 27 0.00091 36.2 7.9 43 438-480 115-163 (405)
266 2iyv_A Shikimate kinase, SK; t 55.5 5.8 0.0002 35.6 2.5 25 70-98 3-27 (184)
267 1aky_A Adenylate kinase; ATP:A 55.4 6.9 0.00024 36.4 3.1 26 68-97 3-28 (220)
268 1ksh_A ARF-like protein 2; sma 55.4 15 0.00053 32.3 5.2 58 449-509 118-180 (186)
269 1w36_D RECD, exodeoxyribonucle 55.2 8.8 0.0003 42.4 4.3 27 68-98 163-189 (608)
270 3exa_A TRNA delta(2)-isopenten 55.2 5 0.00017 41.9 2.2 26 69-98 3-28 (322)
271 3tha_A Tryptophan synthase alp 55.2 14 0.00049 37.2 5.5 143 409-565 40-204 (252)
272 1geq_A Tryptophan synthase alp 54.7 36 0.0012 32.5 8.1 122 429-566 56-197 (248)
273 3qc0_A Sugar isomerase; TIM ba 54.6 68 0.0023 30.0 9.9 103 426-532 72-195 (275)
274 3be4_A Adenylate kinase; malar 54.0 6.1 0.00021 37.0 2.4 27 67-97 3-29 (217)
275 3cny_A Inositol catabolism pro 53.9 63 0.0022 30.8 9.6 87 430-520 83-191 (301)
276 3lxx_A GTPase IMAP family memb 53.9 17 0.00057 34.3 5.5 60 449-509 144-214 (239)
277 1zak_A Adenylate kinase; ATP:A 53.8 7 0.00024 36.4 2.8 28 67-98 3-30 (222)
278 2obn_A Hypothetical protein; s 53.7 10 0.00036 39.9 4.4 37 67-107 150-186 (349)
279 2wji_A Ferrous iron transport 53.5 8.1 0.00028 33.9 3.1 62 443-507 101-163 (165)
280 3upu_A ATP-dependent DNA helic 53.3 6.7 0.00023 41.4 2.9 33 71-108 47-79 (459)
281 2q02_A Putative cytoplasmic pr 53.1 54 0.0018 30.8 8.9 80 437-520 85-171 (272)
282 1x6v_B Bifunctional 3'-phospho 52.2 12 0.0004 42.3 4.8 36 68-108 51-86 (630)
283 3qq5_A Small GTP-binding prote 52.1 11 0.00038 40.1 4.4 68 439-509 129-196 (423)
284 4e22_A Cytidylate kinase; P-lo 52.1 8 0.00027 37.4 3.0 28 67-98 25-52 (252)
285 1htw_A HI0065; nucleotide-bind 52.0 8 0.00028 35.5 2.9 27 67-97 31-57 (158)
286 1p5z_B DCK, deoxycytidine kina 51.9 5.3 0.00018 38.5 1.7 36 67-112 22-57 (263)
287 3t5d_A Septin-7; GTP-binding p 51.6 19 0.00064 35.0 5.6 60 444-507 139-202 (274)
288 3asz_A Uridine kinase; cytidin 51.4 9.4 0.00032 35.0 3.2 27 67-97 4-30 (211)
289 2zvr_A Uncharacterized protein 51.1 70 0.0024 30.7 9.5 107 424-533 100-222 (290)
290 1vg8_A RAS-related protein RAB 51.1 36 0.0012 30.3 7.0 57 449-508 116-174 (207)
291 2gk6_A Regulator of nonsense t 51.0 12 0.00043 41.2 4.7 26 69-98 195-220 (624)
292 3l0i_B RAS-related protein RAB 51.0 4.8 0.00016 36.4 1.1 70 436-508 121-195 (199)
293 3dx5_A Uncharacterized protein 50.9 49 0.0017 31.5 8.3 83 433-519 80-172 (286)
294 2iwr_A Centaurin gamma 1; ANK 50.8 39 0.0013 29.3 7.0 70 436-508 88-168 (178)
295 3reg_A RHO-like small GTPase; 50.5 26 0.00089 31.2 6.0 66 442-509 117-188 (194)
296 1svi_A GTP-binding protein YSX 50.5 31 0.0011 30.4 6.4 60 445-507 129-193 (195)
297 1m7b_A RND3/RHOE small GTP-bin 50.5 24 0.00082 31.2 5.7 57 449-507 110-181 (184)
298 2qag_A Septin-2, protein NEDD5 50.3 12 0.00042 38.5 4.2 59 449-507 173-235 (361)
299 3ea0_A ATPase, para family; al 50.3 30 0.001 32.1 6.5 123 362-536 118-244 (245)
300 1zuh_A Shikimate kinase; alpha 50.2 9.2 0.00032 33.8 2.9 25 70-98 8-32 (168)
301 1via_A Shikimate kinase; struc 49.8 6.3 0.00021 35.3 1.7 24 71-98 6-29 (175)
302 3lw7_A Adenylate kinase relate 49.4 8.3 0.00028 33.2 2.4 20 70-93 2-21 (179)
303 3end_A Light-independent proto 49.2 1.9E+02 0.0066 28.0 15.4 130 359-540 153-289 (307)
304 1rd5_A Tryptophan synthase alp 49.1 38 0.0013 33.0 7.3 121 430-565 71-206 (262)
305 1rj9_A FTSY, signal recognitio 49.1 17 0.00059 36.8 5.0 36 67-107 100-135 (304)
306 3fst_A 5,10-methylenetetrahydr 49.1 10 0.00035 39.0 3.4 104 364-481 178-293 (304)
307 1zd8_A GTP:AMP phosphotransfer 48.8 8.6 0.00029 36.0 2.6 26 68-97 6-31 (227)
308 3eph_A TRNA isopentenyltransfe 48.7 8.9 0.0003 41.3 2.9 25 70-98 3-27 (409)
309 2ewv_A Twitching motility prot 47.8 17 0.00057 37.7 4.8 41 67-112 134-174 (372)
310 1m8p_A Sulfate adenylyltransfe 47.8 14 0.00047 41.0 4.3 34 67-105 394-428 (573)
311 1xp8_A RECA protein, recombina 47.4 17 0.00058 38.0 4.7 45 67-116 72-116 (366)
312 2g0t_A Conserved hypothetical 46.6 22 0.00075 37.4 5.4 37 67-107 167-203 (350)
313 1ak2_A Adenylate kinase isoenz 46.6 13 0.00043 35.2 3.4 27 67-97 14-40 (233)
314 2qt1_A Nicotinamide riboside k 46.5 10 0.00035 34.8 2.7 27 67-97 19-45 (207)
315 1wky_A Endo-beta-1,4-mannanase 46.2 50 0.0017 35.3 8.3 57 439-496 41-101 (464)
316 2pt5_A Shikimate kinase, SK; a 46.1 12 0.0004 32.9 2.8 23 71-97 2-24 (168)
317 2zds_A Putative DNA-binding pr 46.1 90 0.0031 30.4 9.5 87 431-520 105-211 (340)
318 4dcu_A GTP-binding protein ENG 46.0 34 0.0012 36.0 6.9 66 441-509 297-369 (456)
319 3i65_A Dihydroorotate dehydrog 46.0 2.5E+02 0.0084 30.2 13.5 39 450-490 268-307 (415)
320 3b9q_A Chloroplast SRP recepto 46.0 17 0.00059 36.7 4.4 35 67-106 98-132 (302)
321 2q3h_A RAS homolog gene family 45.8 57 0.002 29.0 7.4 65 442-508 114-194 (201)
322 3hr8_A Protein RECA; alpha and 45.8 18 0.0006 37.9 4.6 78 31-115 15-102 (356)
323 3ngj_A Deoxyribose-phosphate a 45.3 21 0.00072 35.8 4.9 80 393-497 109-188 (239)
324 3d3q_A TRNA delta(2)-isopenten 45.2 9.7 0.00033 39.8 2.5 25 70-98 8-32 (340)
325 1d2e_A Elongation factor TU (E 44.9 34 0.0012 35.4 6.6 70 438-508 106-194 (397)
326 1bqc_A Protein (beta-mannanase 44.9 35 0.0012 33.4 6.4 52 441-493 36-91 (302)
327 3p6l_A Sugar phosphate isomera 44.9 24 0.00082 33.4 5.0 73 438-519 92-164 (262)
328 3e70_C DPA, signal recognition 44.8 20 0.00067 36.9 4.7 38 66-108 126-163 (328)
329 1kk1_A EIF2gamma; initiation o 44.7 40 0.0014 34.9 7.1 67 439-508 125-199 (410)
330 2dyk_A GTP-binding protein; GT 44.7 13 0.00044 31.6 2.8 57 446-507 104-160 (161)
331 2zts_A Putative uncharacterize 44.7 19 0.00063 33.3 4.1 35 67-106 28-63 (251)
332 1ub3_A Aldolase protein; schif 44.6 26 0.00088 34.4 5.3 81 393-498 85-165 (220)
333 1yx1_A Hypothetical protein PA 44.6 35 0.0012 32.4 6.2 80 437-520 84-164 (264)
334 4a0g_A Adenosylmethionine-8-am 44.6 8.9 0.0003 44.3 2.3 37 69-110 34-75 (831)
335 1g7s_A Translation initiation 44.5 1.3E+02 0.0044 33.5 11.4 21 442-462 114-134 (594)
336 1g8f_A Sulfate adenylyltransfe 44.2 13 0.00046 40.8 3.5 27 68-98 394-420 (511)
337 1ly1_A Polynucleotide kinase; 43.8 11 0.00039 33.0 2.4 22 70-95 3-24 (181)
338 1ex7_A Guanylate kinase; subst 43.7 12 0.00042 35.5 2.8 42 70-115 2-43 (186)
339 2eyu_A Twitching motility prot 43.5 24 0.00082 34.8 4.9 34 59-97 16-49 (261)
340 2w58_A DNAI, primosome compone 43.4 14 0.00049 33.5 3.1 30 70-104 55-84 (202)
341 1s96_A Guanylate kinase, GMP k 43.4 13 0.00044 35.7 2.9 27 67-97 14-40 (219)
342 3cwq_A Para family chromosome 43.4 63 0.0022 30.1 7.6 84 360-481 65-151 (209)
343 3dpu_A RAB family protein; roc 43.4 19 0.00065 38.7 4.5 70 438-510 136-209 (535)
344 1s0u_A EIF-2-gamma, translatio 43.4 33 0.0011 35.6 6.1 68 439-509 123-198 (408)
345 1njg_A DNA polymerase III subu 43.2 14 0.00049 32.9 3.0 26 69-98 45-70 (250)
346 2jeo_A Uridine-cytidine kinase 43.1 15 0.0005 35.1 3.2 27 67-97 23-49 (245)
347 4hf7_A Putative acylhydrolase; 43.1 55 0.0019 30.0 7.1 46 436-481 104-162 (209)
348 3lk7_A UDP-N-acetylmuramoylala 43.0 17 0.00058 38.4 4.0 31 69-106 112-142 (451)
349 1gwn_A RHO-related GTP-binding 42.9 34 0.0012 31.4 5.7 56 450-507 132-202 (205)
350 3kta_A Chromosome segregation 42.9 15 0.00052 32.8 3.1 23 71-97 28-50 (182)
351 1d2n_A N-ethylmaleimide-sensit 42.9 12 0.00042 35.9 2.7 27 67-97 62-88 (272)
352 4ef8_A Dihydroorotate dehydrog 42.6 2.1E+02 0.0073 29.8 12.1 123 436-566 111-283 (354)
353 3tr5_A RF-3, peptide chain rel 42.3 27 0.00094 38.1 5.6 41 441-481 125-165 (528)
354 3nrs_A Dihydrofolate:folylpoly 42.2 15 0.00051 38.8 3.5 32 67-105 50-81 (437)
355 1yrb_A ATP(GTP)binding protein 42.1 57 0.002 30.6 7.2 29 446-474 167-195 (262)
356 2vp4_A Deoxynucleoside kinase; 41.7 16 0.00055 34.5 3.3 36 67-112 18-53 (230)
357 2wjy_A Regulator of nonsense t 41.5 20 0.0007 41.2 4.6 26 69-98 371-396 (800)
358 1moz_A ARL1, ADP-ribosylation 41.5 41 0.0014 29.2 5.6 71 438-508 103-179 (183)
359 1vht_A Dephospho-COA kinase; s 41.2 14 0.00047 34.2 2.7 23 69-95 4-26 (218)
360 1f76_A Dihydroorotate dehydrog 40.8 1.1E+02 0.0037 30.8 9.4 114 428-548 186-323 (336)
361 3q3j_B RHO-related GTP-binding 40.7 31 0.0011 31.8 5.0 68 440-509 119-203 (214)
362 1f6b_A SAR1; gtpases, N-termin 40.6 36 0.0012 30.9 5.3 68 438-505 110-195 (198)
363 1nlf_A Regulatory protein REPA 40.5 25 0.00086 34.0 4.5 27 67-97 28-54 (279)
364 2lkc_A Translation initiation 40.5 84 0.0029 27.0 7.5 65 442-509 99-171 (178)
365 3hut_A Putative branched-chain 40.5 2.1E+02 0.0072 27.6 11.1 118 443-565 89-225 (358)
366 2kjq_A DNAA-related protein; s 40.4 17 0.00059 32.6 3.1 40 68-113 35-74 (149)
367 1qwg_A PSL synthase;, (2R)-pho 40.1 85 0.0029 31.9 8.3 95 439-544 57-169 (251)
368 1xla_A D-xylose isomerase; iso 39.9 1E+02 0.0034 31.8 9.2 106 424-531 103-234 (394)
369 2cvh_A DNA repair and recombin 39.8 17 0.00057 33.1 2.9 25 67-95 18-42 (220)
370 1w78_A FOLC bifunctional prote 39.7 21 0.00071 37.2 4.0 33 67-106 47-79 (422)
371 1r8s_A ADP-ribosylation factor 39.7 46 0.0016 28.2 5.6 57 449-508 100-161 (164)
372 4b3f_X DNA-binding protein smu 39.6 15 0.00051 40.5 3.0 33 71-108 207-239 (646)
373 3tlx_A Adenylate kinase 2; str 39.5 17 0.0006 34.8 3.2 27 67-97 27-53 (243)
374 2wkq_A NPH1-1, RAS-related C3 39.4 51 0.0018 31.7 6.5 64 443-508 250-329 (332)
375 2og2_A Putative signal recogni 39.4 24 0.00082 36.9 4.4 35 67-106 155-189 (359)
376 1p9r_A General secretion pathw 39.3 24 0.00084 37.5 4.5 40 67-112 165-204 (418)
377 1n0w_A DNA repair protein RAD5 39.3 14 0.00048 34.1 2.4 26 67-96 22-47 (243)
378 3eag_A UDP-N-acetylmuramate:L- 39.2 18 0.00062 36.5 3.3 31 69-106 108-138 (326)
379 3crm_A TRNA delta(2)-isopenten 39.2 14 0.00048 38.3 2.6 26 69-98 5-30 (323)
380 1ivn_A Thioesterase I; hydrola 39.1 2E+02 0.0069 25.3 11.9 72 437-509 86-176 (190)
381 3aam_A Endonuclease IV, endoiv 38.8 63 0.0021 30.6 6.9 85 428-519 79-169 (270)
382 2qu8_A Putative nucleolar GTP- 38.8 57 0.002 30.1 6.5 64 442-508 132-204 (228)
383 3tqc_A Pantothenate kinase; bi 38.6 24 0.00081 36.4 4.1 42 74-140 94-135 (321)
384 1uj2_A Uridine-cytidine kinase 38.5 15 0.0005 35.3 2.4 25 70-98 23-47 (252)
385 1hyq_A MIND, cell division inh 38.4 69 0.0023 30.2 7.1 80 443-537 154-235 (263)
386 2bdt_A BH3686; alpha-beta prot 38.4 14 0.00047 33.3 2.1 25 69-97 2-26 (189)
387 3dc7_A Putative uncharacterize 38.2 1.9E+02 0.0065 26.3 9.9 105 391-509 81-222 (232)
388 2xzl_A ATP-dependent helicase 38.0 24 0.00083 40.5 4.5 35 69-107 375-409 (802)
389 2ged_A SR-beta, signal recogni 38.0 50 0.0017 29.1 5.7 26 449-474 155-180 (193)
390 1jbk_A CLPB protein; beta barr 38.0 13 0.00043 32.2 1.7 28 67-98 41-68 (195)
391 2ehv_A Hypothetical protein PH 38.0 32 0.0011 31.8 4.6 25 67-95 28-52 (251)
392 3rjt_A Lipolytic protein G-D-S 37.9 2.1E+02 0.0071 25.1 10.5 125 342-481 34-170 (216)
393 3nwj_A ATSK2; P loop, shikimat 37.8 16 0.00056 36.0 2.7 26 69-98 48-73 (250)
394 2g3y_A GTP-binding protein GEM 37.6 58 0.002 30.6 6.4 57 449-508 144-202 (211)
395 4dkx_A RAS-related protein RAB 37.4 54 0.0018 31.1 6.2 70 436-508 101-175 (216)
396 1q3t_A Cytidylate kinase; nucl 37.2 21 0.0007 33.8 3.2 28 66-97 13-40 (236)
397 1jwy_B Dynamin A GTPase domain 37.1 32 0.0011 33.5 4.6 67 444-510 192-263 (315)
398 2wsm_A Hydrogenase expression/ 37.1 30 0.001 31.6 4.2 34 70-108 31-64 (221)
399 1vcv_A Probable deoxyribose-ph 37.0 33 0.0011 34.0 4.7 73 393-490 80-152 (226)
400 1k77_A EC1530, hypothetical pr 37.0 69 0.0023 29.9 6.8 100 431-533 79-198 (260)
401 1udx_A The GTP-binding protein 36.9 1.5E+02 0.0051 31.5 10.1 75 430-509 251-325 (416)
402 2eh6_A Acoat, acetylornithine 36.6 81 0.0028 30.8 7.5 27 463-490 190-216 (375)
403 4ad1_A Glycosyl hydrolase fami 36.5 60 0.002 34.2 6.9 67 438-508 105-175 (380)
404 1vi1_A Fatty acid/phospholipid 36.4 7.9 0.00027 40.3 0.2 26 335-360 280-312 (345)
405 2p65_A Hypothetical protein PF 36.4 11 0.00038 32.7 1.2 28 67-98 41-68 (187)
406 1upt_A ARL1, ADP-ribosylation 36.3 89 0.0031 26.5 6.9 58 449-509 107-169 (171)
407 3ake_A Cytidylate kinase; CMP 36.3 14 0.00047 33.4 1.8 23 71-97 4-26 (208)
408 3lxw_A GTPase IMAP family memb 36.2 53 0.0018 31.5 6.0 60 449-509 138-208 (247)
409 4gp7_A Metallophosphoesterase; 36.1 13 0.00044 33.7 1.5 22 67-92 7-28 (171)
410 3llu_A RAS-related GTP-binding 35.9 60 0.0021 29.1 6.0 66 436-505 113-193 (196)
411 2orv_A Thymidine kinase; TP4A 35.8 30 0.001 34.6 4.2 46 67-119 17-62 (234)
412 2qgz_A Helicase loader, putati 35.6 21 0.00071 35.9 3.1 33 69-105 152-184 (308)
413 3oix_A Putative dihydroorotate 35.5 2.9E+02 0.0098 28.7 11.7 101 435-541 111-222 (345)
414 2gks_A Bifunctional SAT/APS ki 35.4 27 0.00091 38.4 4.2 34 68-106 371-404 (546)
415 3czq_A Putative polyphosphate 35.3 13 0.00043 38.6 1.5 42 66-113 83-124 (304)
416 1cr0_A DNA primase/helicase; R 35.2 48 0.0016 32.2 5.5 27 67-97 33-59 (296)
417 4dzz_A Plasmid partitioning pr 34.7 37 0.0013 30.5 4.4 87 359-481 72-160 (206)
418 3apt_A Methylenetetrahydrofola 34.6 24 0.00083 36.1 3.5 103 364-480 175-289 (310)
419 1odf_A YGR205W, hypothetical 3 34.6 25 0.00084 35.3 3.5 28 67-98 29-56 (290)
420 2qby_A CDC6 homolog 1, cell di 34.4 44 0.0015 32.6 5.2 28 67-98 43-70 (386)
421 1p9l_A Dihydrodipicolinate red 34.4 53 0.0018 32.5 5.8 59 439-501 58-117 (245)
422 1z6g_A Guanylate kinase; struc 34.4 18 0.00063 34.1 2.4 25 67-95 21-45 (218)
423 3uk6_A RUVB-like 2; hexameric 34.3 27 0.00092 34.6 3.7 28 67-98 68-95 (368)
424 2r2a_A Uncharacterized protein 34.3 26 0.0009 33.3 3.5 23 71-97 7-29 (199)
425 3aez_A Pantothenate kinase; tr 34.2 39 0.0013 34.3 4.9 28 66-97 87-114 (312)
426 1mzh_A Deoxyribose-phosphate a 34.2 1.4E+02 0.0049 28.7 8.7 62 442-507 107-172 (225)
427 2x77_A ADP-ribosylation factor 34.1 74 0.0025 28.0 6.2 58 449-509 122-184 (189)
428 2cjw_A GTP-binding protein GEM 34.1 81 0.0028 28.4 6.6 64 442-508 105-171 (192)
429 3tqf_A HPR(Ser) kinase; transf 33.9 22 0.00077 34.4 2.9 25 68-96 15-39 (181)
430 3bh0_A DNAB-like replicative h 33.6 36 0.0012 34.1 4.5 64 27-97 26-92 (315)
431 3ngf_A AP endonuclease, family 33.5 1E+02 0.0036 29.2 7.5 86 431-519 87-185 (269)
432 3vzx_A Heptaprenylglyceryl pho 33.5 1.1E+02 0.0038 30.3 7.9 108 439-555 94-220 (228)
433 1muw_A Xylose isomerase; atomi 33.3 1.2E+02 0.004 31.1 8.4 107 424-532 103-235 (386)
434 3e2i_A Thymidine kinase; Zn-bi 33.3 35 0.0012 33.8 4.3 47 67-120 26-72 (219)
435 1ydn_A Hydroxymethylglutaryl-C 33.2 1.5E+02 0.0052 29.4 8.9 103 435-543 118-231 (295)
436 2f6r_A COA synthase, bifunctio 33.1 24 0.00083 34.8 3.1 22 69-94 75-96 (281)
437 2zr9_A Protein RECA, recombina 33.1 39 0.0013 34.8 4.7 35 67-106 59-93 (349)
438 1t9h_A YLOQ, probable GTPase E 33.1 83 0.0028 32.1 7.1 46 439-485 106-155 (307)
439 3syl_A Protein CBBX; photosynt 33.0 35 0.0012 32.9 4.1 32 67-103 65-96 (309)
440 3l23_A Sugar phosphate isomera 32.8 1.5E+02 0.0051 29.1 8.7 56 433-489 104-168 (303)
441 1jbw_A Folylpolyglutamate synt 32.7 31 0.0011 36.0 4.0 40 68-115 38-77 (428)
442 1g3q_A MIND ATPase, cell divis 32.6 48 0.0016 30.6 4.9 123 361-535 110-234 (237)
443 3p26_A Elongation factor 1 alp 32.3 82 0.0028 33.5 7.2 43 438-480 158-207 (483)
444 4eyg_A Twin-arginine transloca 32.2 2.9E+02 0.0098 26.6 10.6 119 443-565 89-228 (368)
445 3izy_P Translation initiation 32.0 35 0.0012 37.6 4.4 69 439-508 93-167 (537)
446 2x5o_A UDP-N-acetylmuramoylala 31.2 36 0.0012 35.7 4.2 31 69-106 104-134 (439)
447 2v1u_A Cell division control p 31.0 32 0.0011 33.7 3.6 28 67-98 42-69 (387)
448 1pui_A ENGB, probable GTP-bind 31.0 1.6E+02 0.0054 26.3 7.9 63 446-509 133-199 (210)
449 1o5z_A Folylpolyglutamate synt 30.7 31 0.0011 36.4 3.6 40 68-115 51-90 (442)
450 1sq5_A Pantothenate kinase; P- 30.7 32 0.0011 34.3 3.5 46 67-140 78-123 (308)
451 3zwt_A Dihydroorotate dehydrog 30.5 4.8E+02 0.017 27.1 13.5 39 449-489 219-257 (367)
452 2h17_A ADP-ribosylation factor 30.4 64 0.0022 28.4 5.1 55 448-505 120-179 (181)
453 1tv8_A MOAA, molybdenum cofact 30.3 75 0.0026 31.7 6.2 51 436-487 145-195 (340)
454 2grj_A Dephospho-COA kinase; T 30.2 26 0.00089 33.0 2.7 26 68-97 11-36 (192)
455 2b6h_A ADP-ribosylation factor 30.1 81 0.0028 28.3 5.8 68 438-508 114-190 (192)
456 4a74_A DNA repair and recombin 29.9 24 0.00081 32.2 2.3 26 67-96 23-48 (231)
457 2afh_E Nitrogenase iron protei 29.9 1.7E+02 0.0058 28.2 8.4 34 70-108 3-36 (289)
458 3hn7_A UDP-N-acetylmuramate-L- 29.8 30 0.001 37.5 3.4 31 69-106 122-152 (524)
459 2qby_B CDC6 homolog 3, cell di 29.8 35 0.0012 33.8 3.6 28 67-98 43-70 (384)
460 1cke_A CK, MSSA, protein (cyti 29.7 20 0.00069 33.0 1.7 25 69-97 5-29 (227)
461 1uf9_A TT1252 protein; P-loop, 29.7 31 0.001 31.0 2.9 23 69-95 8-30 (203)
462 1f60_A Elongation factor EEF1A 29.3 54 0.0019 34.8 5.2 43 438-480 132-181 (458)
463 2r6a_A DNAB helicase, replicat 28.8 50 0.0017 34.8 4.8 28 67-98 201-228 (454)
464 1w8s_A FBP aldolase, fructose- 28.8 1.6E+02 0.0053 29.2 8.1 96 439-544 127-232 (263)
465 2chg_A Replication factor C sm 28.7 34 0.0012 30.2 3.0 24 71-98 40-63 (226)
466 3fb4_A Adenylate kinase; psych 28.7 21 0.0007 32.8 1.6 22 72-97 3-24 (216)
467 1m2o_B GTP-binding protein SAR 28.7 64 0.0022 28.9 4.9 57 448-504 122-187 (190)
468 1wf3_A GTP-binding protein; GT 28.5 1.5E+02 0.0052 29.5 8.0 61 444-508 109-172 (301)
469 2a5y_B CED-4; apoptosis; HET: 28.2 34 0.0011 36.8 3.4 68 39-112 123-195 (549)
470 1svm_A Large T antigen; AAA+ f 28.1 35 0.0012 35.8 3.4 28 66-97 166-193 (377)
471 2yhs_A FTSY, cell division pro 28.1 46 0.0016 36.7 4.4 36 67-107 291-326 (503)
472 1jub_A Dihydroorotate dehydrog 28.0 1.3E+02 0.0045 29.7 7.5 50 438-489 145-195 (311)
473 1e8c_A UDP-N-acetylmuramoylala 28.0 36 0.0012 36.4 3.5 32 68-106 107-138 (498)
474 2q6t_A DNAB replication FORK h 27.7 57 0.0019 34.2 4.9 28 66-97 197-224 (444)
475 3ghf_A Septum site-determining 27.6 68 0.0023 28.6 4.8 56 426-486 24-81 (120)
476 1nrj_B SR-beta, signal recogni 27.6 1E+02 0.0034 27.8 6.0 34 431-464 101-134 (218)
477 1zd9_A ADP-ribosylation factor 27.6 80 0.0027 28.0 5.3 57 449-508 123-184 (188)
478 1u83_A Phosphosulfolactate syn 27.3 94 0.0032 32.0 6.3 95 438-544 81-193 (276)
479 1jjv_A Dephospho-COA kinase; P 27.3 17 0.00057 33.2 0.7 21 71-95 4-24 (206)
480 3r20_A Cytidylate kinase; stru 27.2 23 0.00079 34.8 1.7 25 69-97 9-33 (233)
481 2bbw_A Adenylate kinase 4, AK4 27.1 22 0.00076 33.7 1.6 27 68-98 26-52 (246)
482 3jug_A Beta-mannanase; TIM-bar 27.0 1.6E+02 0.0055 30.3 8.1 120 440-571 57-185 (345)
483 3fvq_A Fe(3+) IONS import ATP- 26.9 44 0.0015 35.0 3.9 23 67-93 28-50 (359)
484 3ll9_A Isopentenyl phosphate k 26.9 17 0.0006 36.1 0.8 14 330-343 42-56 (269)
485 2h5e_A Peptide chain release f 26.9 45 0.0015 36.4 4.1 43 439-481 123-165 (529)
486 2f1r_A Molybdopterin-guanine d 26.8 26 0.00088 32.5 1.9 29 71-104 4-32 (171)
487 3ndo_A Deoxyribose-phosphate a 26.6 89 0.003 31.1 5.8 80 393-496 94-177 (231)
488 2vf7_A UVRA2, excinuclease ABC 26.5 22 0.00074 41.5 1.6 23 67-93 34-56 (842)
489 3pih_A Uvrabc system protein A 26.5 25 0.00086 41.3 2.2 27 67-97 22-48 (916)
490 3oam_A 3-deoxy-manno-octuloson 26.4 2.5E+02 0.0084 26.9 8.9 85 435-533 26-114 (252)
491 1j6u_A UDP-N-acetylmuramate-al 26.4 41 0.0014 35.8 3.6 32 69-107 114-145 (469)
492 2axn_A 6-phosphofructo-2-kinas 26.3 49 0.0017 36.0 4.3 33 68-105 34-66 (520)
493 2ygr_A Uvrabc system protein A 26.0 23 0.0008 42.1 1.8 25 67-95 44-68 (993)
494 2gza_A Type IV secretion syste 25.9 25 0.00087 36.1 1.9 27 67-97 173-199 (361)
495 2wtz_A UDP-N-acetylmuramoyl-L- 25.9 41 0.0014 36.5 3.5 32 68-106 145-176 (535)
496 4hv4_A UDP-N-acetylmuramate--L 25.8 42 0.0015 36.0 3.6 29 70-105 123-151 (494)
497 4i6k_A Amidohydrolase family p 25.8 2E+02 0.0069 28.0 8.3 97 438-543 138-246 (294)
498 2hjg_A GTP-binding protein ENG 25.7 84 0.0029 32.8 5.8 65 442-509 278-349 (436)
499 1ltq_A Polynucleotide kinase; 25.7 32 0.0011 33.3 2.4 23 70-96 3-25 (301)
500 1byi_A Dethiobiotin synthase; 25.6 1.1E+02 0.0038 27.9 6.0 46 436-481 152-198 (224)
No 1
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=100.00 E-value=7.5e-269 Score=2117.37 Aligned_cols=541 Identities=45% Similarity=0.758 Sum_probs=535.4
Q ss_pred CCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 28 PLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 28 ~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
++||++||+++||++|||||||+|||||++++++|++++++|||||||||||||+|||||||||||+|||+ |+||++++
T Consensus 2 ~~pI~~iA~~lgi~~~~le~YG~~kAKv~~~~l~~~~~~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~-~lgk~~~~ 80 (543)
T 3do6_A 2 MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLN-RIGKKSIV 80 (543)
T ss_dssp CCCHHHHHHHTTCCGGGEEEETTTEEEECTTHHHHTTTSCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHH-HTTCCEEE
T ss_pred CCCHHHHHHHcCCCHHHHHhCCCccEEecHHHhhhhhcCCCCeEEEEEecCCCCCCCCccchHHHHHHHHH-hcCCeeEE
Confidence 78999999999999999999999999999999999988899999999999999999999999999999995 99999999
Q ss_pred EeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChhHhhhccCCCCCcCC
Q 006673 108 CLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDKALFNRLCPPNKEGE 187 (636)
Q Consensus 108 ~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~~~~~~l~~~~~~~~ 187 (636)
|||||||||||||||||||||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 81 ~lRePSlGP~FGiKGGAaGGGysQViPMediNLHfTGD~HAItaAnNLLaA~iDn~i~~gn------------------- 141 (543)
T 3do6_A 81 TLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGN------------------- 141 (543)
T ss_dssp EECCCCHHHHHHSCCSTTEETTEEEESHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred EEecCCCCCcCCcccccCCCcceeecchhhccccccchHHHHHHHHHHHHHHHHHHHhccC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred cchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCCCCcceecceeEeeh
Q 006673 188 RSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEEKGMVRETGFDISVA 267 (636)
Q Consensus 188 r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~~G~~r~~gFdITvA 267 (636)
+|+|||++|+||||||||||+||+|+||+|++.||+|||||||||||
T Consensus 142 ---------------------------------~L~IDp~~I~WkRv~D~NDR~LR~IvvGlGg~~~G~~re~gFdITvA 188 (543)
T 3do6_A 142 ---------------------------------ELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAA 188 (543)
T ss_dssp ---------------------------------TTCEEEEEECCCEEESSCCGGGSSEEESCSSGGGCCCEEECEEEGGG
T ss_pred ---------------------------------ccCCCCCeEEEEecccccCceeeeeEECCCCCCCCCccccceeEEeh
Confidence 79999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCceeEEcccCccccccCC
Q 006673 268 SEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPVLVHAGPFANIAHGN 347 (636)
Q Consensus 268 SEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa~VHgGPFANIAhG~ 347 (636)
||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||||||||||||||||
T Consensus 189 SEiMAILcLa~dl~DLk~Rlg~ivvay~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa~VHgGPFANIAHGc 268 (543)
T 3do6_A 189 SEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGT 268 (543)
T ss_dssp SHHHHHHHHCSSHHHHHHHHHTCEEEEETTSCEEEHHHHTCHHHHHHHTTTTTSCEEEEETTSCEEEECCCCCSSSSCCB
T ss_pred hhhhhHHHhcCCHHHHHHHhcCEEEEEcCCCCeEehHhcccchhHHHHHHhhcCccceeeccCCeeEEecCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCccccccc
Q 006673 348 SSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNE 427 (636)
Q Consensus 348 nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~e 427 (636)
|||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++ ++|.+|
T Consensus 269 nSviAtk~ALkla---DyvVTEAGFGADlGaEKF~dIKCR~~gl~P~avVlVATvRALK~hGG~~~--------~~l~~e 337 (543)
T 3do6_A 269 NSIIATKMAMKLS---EYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANL--------KNIHEE 337 (543)
T ss_dssp CCHHHHHHHHHHC---SEEEEEBSSSTTTHHHHHHHTHHHHHTCCCSEEEEEECHHHHHHHTTCCG--------GGTTSC
T ss_pred hHHHHHHHHHhcc---CeEEEecccccccchHhhcCccccccCCCCCEEEEEeehHHHHhcCCCCh--------hhcCcc
Confidence 9999999999999 99999999999999999999999999999999999999999999999987 678899
Q ss_pred CHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
|+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++|+||++||+|++|||++|+++|
T Consensus 338 nl~al~~G~~NL~kHIen~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 338 NLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVR-VAVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTCCHHHHHHHHHHHHTTTCE-EEEECHHHHGGGGSHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEechhhccchhHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999995 9999999999999999999999999
Q ss_pred hcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCCCCCCCCCCCCCCce
Q 006673 508 ENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSFSHNAAEKGAPTGFI 586 (636)
Q Consensus 508 e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySlSdDp~l~G~P~gf~ 586 (636)
+ +++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++||||||||||||||||+++|+|+||+
T Consensus 417 e--~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCmAKTqySlS~dp~~~G~P~gf~ 494 (543)
T 3do6_A 417 K--DVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGYT 494 (543)
T ss_dssp C--CCCCCCSSCTTSCHHHHHHHHHHHTSCCSEEEECHHHHHHHHHHHHTTCTTSCEEEECCSSSSSSCTTCCSCCCSCE
T ss_pred c--CCCcccccCCCCCHHHHHHHHHHHHcCCCeEEECHHHHHHHHHHHhcCCCCCCEEEEccCcCcccCccccCCCCCce
Confidence 7 57899999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred EEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 587 LPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 587 l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
||||||++|+|||||||+||+|||||||||+|+|++|||| ++|+|+|||
T Consensus 495 ~~irdv~~saGAGFiv~l~G~i~tMPGLp~~Paa~~idvd-~~G~i~GLf 543 (543)
T 3do6_A 495 FVVSDLFVSAGAGFVVALSGDINLMPGLPKKPNALNMDVD-DSGNIVGVS 543 (543)
T ss_dssp EEECEEEEETTTTEEEEECSCCCSSCCCCSSCGGGGCEEC-TTSCEESCC
T ss_pred EEeeEEEEcCCCcEEEEEeCcceeCCCCCCCccceeCcCC-CCCCEeeCC
Confidence 9999999999999999999999999999999999999999 999999998
No 2
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=100.00 E-value=7.8e-258 Score=2042.65 Aligned_cols=555 Identities=52% Similarity=0.885 Sum_probs=543.3
Q ss_pred CCCCChHHHHccCCCCCHHHHHHHcCCCCcccccccCeeeeeccchhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHH
Q 006673 14 SPVPADIDIANSVEPLHISEIAQELNLKPNHYDLYGKYKAKVLLSVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGL 93 (636)
Q Consensus 14 ~~m~sd~eia~~~~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL 93 (636)
+||||||||||+++|+||++||+++||++||||+||+|||||++++++++++++++|+|+||+++|||+||||||||++|
T Consensus 2 ~~~~sDieIa~~~~~~pI~~ia~~~gi~~~~lE~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinL 81 (557)
T 3pzx_A 2 SKVPSDIEIAQAAKMKPVMELARGLGIQEDEVELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGL 81 (557)
T ss_dssp ----CCTTTTTTCCCCCHHHHHHHTTCCGGGEEEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHH
T ss_pred CCCCCHHHHHhhCCCcCHHHHHHHcCCCHHHHHHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHH
Confidence 48999999999999999999999999999999999999999999999998888899999999999999999999999999
Q ss_pred HHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccccccchhhHHHHHHhHHHHHHHhhhhccccCChh
Q 006673 94 CQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFHEASQSDK 173 (636)
Q Consensus 94 ~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~~n~~~~~ 173 (636)
+++| +++|++++++||+|||||+||+||||+|||||||+|||||||||||||||||||||||||+|||||||||
T Consensus 82 A~al-A~~GkkVLLiLR~Psl~~~FGikggaaggG~sqv~Pme~~nLhfTGD~hAItaAnNLlaA~iDn~i~~gn----- 155 (557)
T 3pzx_A 82 TDAL-ARLGKRVMVCLREPSLGPSFGIKGGAAGGGYAQVVPMEDINLHFTGDIHAVTYAHNLLAAMVDNHLQQGN----- 155 (557)
T ss_dssp HHHH-HHTTCCEEEEECCCCSHHHHHTCCCCEEETTEEEECHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred HHHH-HHcCCeEEEEeCCCCccccCCCCCCCCCCCceeeeechhcccCccCchhhHHHhhhHHHHHHHHHHhhcC-----
Confidence 9999 5999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeeeecccccccccceeeeccCCCC
Q 006673 174 ALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKITIGQGPEE 253 (636)
Q Consensus 174 ~~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I~iGlg~~~ 253 (636)
+|+|||++|+|+||||||||+||+|++|+|++.
T Consensus 156 -----------------------------------------------~l~idp~~i~w~Rv~D~NdR~LR~i~~glg~~~ 188 (557)
T 3pzx_A 156 -----------------------------------------------VLNIDPRTITWRRVIDLNDRALRNIVIGLGGKA 188 (557)
T ss_dssp -----------------------------------------------TTCBCGGGCCCCEEESSCCGGGSSEEESCSSGG
T ss_pred -----------------------------------------------CCCccCCeeEEeeeecCChHHhhhhhhccCCCC
Confidence 799999999999999999999999999999999
Q ss_pred CCcceecceeEeehhhHHHHHHccCCHHHHHHHhcCcEEeecCCCCceeecccccchhHHHHhhhccCcCceeeecCcee
Q 006673 254 KGMVRETGFDISVASEIMAVLALTTSLADMRERLGKMVIGNSKAGDPITADDLGVGGALTVLMKDAINPTLMQTLEGTPV 333 (636)
Q Consensus 254 ~G~~r~~gFdITvASEiMAIl~La~~l~Dlk~Rl~~ivva~~~~g~Pvta~DL~~~GAm~~LLkdAlkPNLvQTlEgtPa 333 (636)
||+|||||||||||||||||||||+|++|||+||||||||||+||+||||+||+++||||+|||||||||||||||||||
T Consensus 189 ~G~~re~gFdITvASEiMAIlcLa~dl~Dlk~Rlg~ivv~~~~~g~PVta~DL~~~GAmt~LLkDAikPNLvQTlEgtPa 268 (557)
T 3pzx_A 189 NGVPRETGFDISVASEVMACLCLASDLMDLKERFSRIVVGYTYDGKPVTAGDLEAQGSMALLMKDAIKPNLVQTLENTPA 268 (557)
T ss_dssp GCCCEEECEEEGGGCHHHHHHHHCSSHHHHHHHHHHCEEEEBTTSCEEETGGGTCHHHHHHHTTTTTSCEEEEETTCCEE
T ss_pred CCCccccceeEEehhhhhhHHHhcCCHHHHHHHhhCEEEEEcCCCCeeeHHHcccchhHHHHHHhhcCccceeeccCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCccccccCCchHHHHHHHHhhcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCC
Q 006673 334 LVHAGPFANIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQ 413 (636)
Q Consensus 334 ~VHgGPFANIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~ 413 (636)
|||||||||||||||||||||+||||+ ||||||||||||||||||||||||.+||+||||||||||||||||||+++
T Consensus 269 ~vHgGPFANIAHGcnSviAtk~ALkl~---dyvVTEAGFGaDlGaEKF~dIKcR~~gl~P~avVlVATvRALK~hGG~~~ 345 (557)
T 3pzx_A 269 FIHGGPFANIAHGCNSIIATKTALKLA---DYVVTEAGFGADLGAEKFYDVKCRYAGFKPDATVIVATVRALKMHGGVPK 345 (557)
T ss_dssp EECCCCCSSSSCCBCCHHHHHHHHHHC---SEEEEEBSSCTTTHHHHHHHTHHHHHTCCCCEEEEEECHHHHHHHTTCCG
T ss_pred EEecCcccccccCchHHHHHHHHHhcc---CeEEEecccCcCcchhhhcCCcccccCCCCCEEEEEeehHHHHhcCCCCh
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 006673 414 VVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (636)
Q Consensus 414 ~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GG 493 (636)
++|.+||+++|++||+||+|||||+++||+|||||||+|++||++||++|+++|+++|++ +++| |++||
T Consensus 346 --------~~l~~en~~al~~G~~NL~kHien~~~fGvpvVVaiN~F~tDT~aEi~~v~~~~~~~G~~-~~~~--wa~GG 414 (557)
T 3pzx_A 346 --------SDLATENLEALREGFANLEKHIENIGKFGVPAVVAINAFPTDTEAELNLLYELCAKAGAE-VALS--WAKGG 414 (557)
T ss_dssp --------GGTTSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCTTCCHHHHHHHHHHCCSSEEE-EECH--HHHGG
T ss_pred --------hhcCccCHHHHHHHHHHHHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCC-EEEE--ecccc
Confidence 678899999999999999999999999999999999999999999999999999999995 9999 99999
Q ss_pred cchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCCC
Q 006673 494 KGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYSF 572 (636)
Q Consensus 494 eGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqySl 572 (636)
+|++|||++|+++|++++++|+|||++++||+|||++||+ ||||++|+||++|++||++||++||++||||||||||||
T Consensus 415 ~G~~~LA~~Vv~~~~~~~~~f~~lY~~~~~i~eKI~~Ia~~iYGA~~V~~s~~A~~~l~~~~~~G~~~lPvCmAKTqyS~ 494 (557)
T 3pzx_A 415 EGGLELARKVLQTLESRPSNFHVLYNLDLSIKDKIAKIATEIYGADGVNYTAEADKAIQRYESLGYGNLPVVMAKTQYSF 494 (557)
T ss_dssp GGGHHHHHHHHHHHHHCCCCCCCSSCTTSCHHHHHHHHHHHTTCCSCEEECHHHHHHHHHHHHTTCTTSCBCCBCCSSCS
T ss_pred hhHHHHHHHHHHHHhcCCCCccccCCCCCCHHHHHHHHHHHHhCCCeEEECHHHHHHHHHHHHcCCCCCCEEEEcCCcCc
Confidence 9999999999999997668899999999999999999999 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceEEeeEEEeeCCCceEEeecCccccCCCCCCCCceeeeeeeCCCCeEeccC
Q 006673 573 SHNAAEKGAPTGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYEIDVDTATGKVVGLS 636 (636)
Q Consensus 573 SdDp~l~G~P~gf~l~Vrdv~~~aGAGFival~G~ImtMPGLPk~Paa~~Idvd~~~G~I~GL~ 636 (636)
||||+++|+|+||+||||||++|+|||||||+||+|||||||||+|+|++|||| ++|+|+|||
T Consensus 495 S~dp~~~G~P~gf~~~ir~v~~s~GAGFiv~l~G~i~tMPGLp~~Paa~~idvd-~~G~i~GLf 557 (557)
T 3pzx_A 495 SDDMTKLGRPRNFTITVREVRLSAGGRLIVPITGAIMTMPGLPKRPAACNIDID-ADGVITGLF 557 (557)
T ss_dssp SSSTTCCSSCCSCCEEECCCEEETTTEEECBCSSCCCCSCCCCSSCGGGGCBCS-SSCCBCC--
T ss_pred CcCccccCCCCCceEEeeEEEEcCCCcEEEEEeCcceeCCCCCCCccceecccC-CCCCEeecC
Confidence 999999999999999999999999999999999999999999999999999999 999999998
No 3
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.95 E-value=3.6e-29 Score=207.54 Aligned_cols=70 Identities=56% Similarity=0.883 Sum_probs=67.6
Q ss_pred hhhhccccCChhHhhhccCCCCCcCCcchhHHHHHHHHhhcCCCCCCCCCCHHHHhhhccCCCCCCceeee
Q 006673 162 TRIFHEASQSDKALFNRLCPPNKEGERSFSNIMFRRLKKLGISKTKPEDLTPEEINRFARLDIDPASITWR 232 (636)
Q Consensus 162 n~i~~~n~~~~~~~~~~l~~~~~~~~r~~~~~~~~rl~~~~i~~~~p~~l~~~~~~~~~~L~IDp~~I~w~ 232 (636)
.+||||++|+|++||+|||| .++|+|+||++|++||+||||+|+||++||+||+++|++|||||++|+|+
T Consensus 2 ~~mfHE~TQsD~aLy~RLVP-~~kG~R~Fs~iql~RL~kLGI~ktdP~~LT~eEi~~FaRLdIDP~TITw~ 71 (71)
T 2eo2_A 2 SSGSSGSTQTDKALYNRLVP-LVNGVREFSEIQLSRLKKLGIHKTDPSTLTEEEVRKFARLNIDPATITWQ 71 (71)
T ss_dssp CCCSCCSSCSHHHHHHHHSC-CSSSSCCCCHHHHHHHHHHTCCCCSTTTCCHHHHHHHHHTCCCSTTCCCC
T ss_pred CccccccccchHHHHHhhCC-CCCCeeecCHHHHHHHHHcCCCCCCcccCCHHHHhhceecccCccceeeC
Confidence 47999999999999999999 56799999999999999999999999999999999999999999999996
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.96 E-value=0.0004 Score=70.16 Aligned_cols=52 Identities=25% Similarity=0.390 Sum_probs=44.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
...|.|+||+..| ||||||++..|+.+| ++.|+++.+. +|+|++.-.||+..
T Consensus 102 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~r~~~l~~~~~~~~ 156 (299)
T 3cio_A 102 TENNILMITGATP---DSGKTFVSSTLAAVI-AQSDQKVLFIDADLRRGYSHNLFTVSN 156 (299)
T ss_dssp CSCCEEEEEESSS---SSCHHHHHHHHHHHH-HHTTCCEEEEECCTTTCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCChHHHHHHHHHHH-HhCCCcEEEEECCCCCccHHHHcCCCC
Confidence 4579999998654 999999999999999 5889998765 79999988898764
No 5
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.87 E-value=0.00054 Score=68.22 Aligned_cols=52 Identities=29% Similarity=0.399 Sum_probs=44.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
+..|.|+||+-.| ||||||++..|+.+| ++.|+++.+. +|.|++.-.||+..
T Consensus 80 ~~~kvI~vts~kg---G~GKTt~a~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 80 SAVQSIVITSEAP---GAGKSTIAANLAVAY-AQAGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp CCCCEEEEECSST---TSSHHHHHHHHHHHH-HHTTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCeEEEEeCCCCCccHHHHcCCCC
Confidence 4578999997554 999999999999999 5899998875 89999988898754
No 6
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.51 E-value=0.0012 Score=66.67 Aligned_cols=52 Identities=17% Similarity=0.340 Sum_probs=44.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
.+.|.|+||+-.| ||||||++..|+.+| ++.|+++.+. +|.|++.-.||++.
T Consensus 90 ~~~kvI~vts~kg---G~GKTtva~nLA~~l-A~~G~rVLLID~D~~~~~l~~~~~~~~ 144 (286)
T 3la6_A 90 AQNNVLMMTGVSP---SIGMTFVCANLAAVI-SQTNKRVLLIDCDMRKGYTHELLGTNN 144 (286)
T ss_dssp TTCCEEEEEESSS---SSSHHHHHHHHHHHH-HTTTCCEEEEECCTTTCCHHHHHTCCC
T ss_pred CCCeEEEEECCCC---CCcHHHHHHHHHHHH-HhCCCCEEEEeccCCCCCHHHHhCCCC
Confidence 4589999998665 999999999999999 5889998765 78899988898753
No 7
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=95.52 E-value=0.0088 Score=60.68 Aligned_cols=53 Identities=23% Similarity=0.132 Sum_probs=42.0
Q ss_pred CCC-cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee--CCCCCCccccccC
Q 006673 67 ADG-YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (636)
Q Consensus 67 ~~g-klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR--ePSlGP~FGiKGG 123 (636)
.+| |.|+||+- .-|+||||+|..|+.+| ++.|+++.+.== +||+.-.||.+.+
T Consensus 10 ~~gm~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 65 (324)
T 3zq6_A 10 NKGKTTFVFIGG---KGGVGKTTISAATALWM-ARSGKKTLVISTDPAHSLSDSLEREIG 65 (324)
T ss_dssp BTTBCEEEEEEE---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCSSCCHHHHHTSCCC
T ss_pred CCCCeEEEEEeC---CCCchHHHHHHHHHHHH-HHCCCcEEEEeCCCCcCHHHHhCCcCC
Confidence 458 77777765 56999999999999999 578999876522 5777778998753
No 8
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.40 E-value=0.0079 Score=57.70 Aligned_cols=50 Identities=28% Similarity=0.322 Sum_probs=38.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||++.
T Consensus 2 ~~~I~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~l~~~~ 54 (263)
T 1hyq_A 2 VRTITVAS---GKGGTGKTTITANLGVAL-AQLGHDVTIVDADITMANLELILGMEG 54 (263)
T ss_dssp CEEEEEEE---SSSCSCHHHHHHHHHHHH-HHTTCCEEEEECCCSSSSHHHHTTCCC
T ss_pred CeEEEEEC---CCCCCCHHHHHHHHHHHH-HhCCCcEEEEECCCCCCCcchhcCCCC
Confidence 46777776 567999999999999999 5789987654 35677777777653
No 9
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.25 E-value=0.0082 Score=57.08 Aligned_cols=50 Identities=24% Similarity=0.272 Sum_probs=38.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCcccccc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKG 122 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKG 122 (636)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||+..
T Consensus 2 ~~vi~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~~~~~lg~~~ 54 (260)
T 3q9l_A 2 ARIIVVTS---GKGGVGKTTSSAAIATGL-AQKGKKTVVIDFAIGLRNLDLIMGCER 54 (260)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCCSSCCHHHHTTCGG
T ss_pred CeEEEEEC---CCCCCcHHHHHHHHHHHH-HhCCCcEEEEECCCCCCChhHHhCCCC
Confidence 56777776 567999999999999999 5789997763 35677766676543
No 10
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.82 E-value=0.024 Score=53.42 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=31.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~l-g~~~~~~ 108 (636)
+++|.|.|++- .-|+||||++..|+.+| ++. |+++.+.
T Consensus 2 ~~~~vI~v~s~---kGGvGKTt~a~~LA~~l-a~~~g~~Vlli 40 (245)
T 3ea0_A 2 NAKRVFGFVSA---KGGDGGSCIAANFAFAL-SQEPDIHVLAV 40 (245)
T ss_dssp -CCEEEEEEES---STTSSHHHHHHHHHHHH-TTSTTCCEEEE
T ss_pred CCCeEEEEECC---CCCcchHHHHHHHHHHH-HhCcCCCEEEE
Confidence 35788888875 56999999999999999 577 9998765
No 11
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.56 E-value=0.027 Score=52.83 Aligned_cols=49 Identities=27% Similarity=0.348 Sum_probs=35.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIK 121 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiK 121 (636)
+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+. .++|++.-.||+.
T Consensus 2 ~~~i~v~s---~kgGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~~~~~ 53 (237)
T 1g3q_A 2 GRIISIVS---GKGGTGKTTVTANLSVAL-GDRGRKVLAVDGDLTMANLSLVLGVD 53 (237)
T ss_dssp CEEEEEEC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCTTSCCHHHHTTCC
T ss_pred ceEEEEec---CCCCCCHHHHHHHHHHHH-HhcCCeEEEEeCCCCCCChhHhcCCC
Confidence 46777765 567999999999999999 5789987654 2445555555553
No 12
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.36 E-value=0.031 Score=55.26 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=32.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
+.+|.|.|+ . .-|+||||+|+.|+.+| ++.|+++.+.=-.
T Consensus 39 ~~~~vI~v~---~-KGGvGKTT~a~nLA~~L-a~~G~~VlliD~D 78 (307)
T 3end_A 39 TGAKVFAVY---G-KGGIGKSTTSSNLSAAF-SILGKRVLQIGCD 78 (307)
T ss_dssp -CCEEEEEE---C-STTSSHHHHHHHHHHHH-HHTTCCEEEEEES
T ss_pred CCceEEEEE---C-CCCccHHHHHHHHHHHH-HHCCCeEEEEeCC
Confidence 568899887 2 88999999999999999 5789998765333
No 13
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=94.34 E-value=0.021 Score=53.30 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=28.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
|.|.||+ +.-|+||||+|.+|+.+| ++.|+++.+
T Consensus 2 k~I~v~s---~kgGvGKTt~a~nLa~~l-a~~G~rVll 35 (224)
T 1byi_A 2 KRYFVTG---TDTEVGKTVASCALLQAA-KAAGYRTAG 35 (224)
T ss_dssp EEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ceEEEEE---CCCCCCHHHHHHHHHHHH-HHCCCCEEE
Confidence 4566654 677999999999999999 588999775
No 14
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=94.33 E-value=0.017 Score=58.85 Aligned_cols=51 Identities=24% Similarity=0.261 Sum_probs=40.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccccC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKGG 123 (636)
++|.|+||+ +.-|+||||+|..|+.+| ++.|+++.+. +| ||+.-.||++.+
T Consensus 17 ~~~~i~v~s---gkGGvGKTTva~~LA~~l-A~~G~rVllvD~D~~-~~l~~~l~~~~~ 70 (329)
T 2woo_A 17 TSLKWIFVG---GKGGVGKTTTSCSLAIQM-SKVRSSVLLISTDPA-HNLSDAFGTKFG 70 (329)
T ss_dssp TTCCEEEEE---CSSSSSHHHHHHHHHHHH-HTSSSCEEEEECCTT-CHHHHHHSSCCC
T ss_pred CCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEEEECCCC-cCHHHHhCCcCC
Confidence 356666664 477999999999999999 5889998764 35 888888998753
No 15
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=94.27 E-value=0.039 Score=53.52 Aligned_cols=38 Identities=32% Similarity=0.091 Sum_probs=31.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
..+|.|.|++ +.-|+||||++..|+.+| ++.|+++.+.
T Consensus 16 ~~~~vI~v~s---~kGGvGKTT~a~nLA~~l-a~~G~~Vlli 53 (262)
T 2ph1_A 16 KIKSRIAVMS---GKGGVGKSTVTALLAVHY-ARQGKKVGIL 53 (262)
T ss_dssp TCSCEEEEEC---SSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred cCCeEEEEEc---CCCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4578888876 567999999999999999 5789987653
No 16
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=93.96 E-value=0.03 Score=54.12 Aligned_cols=38 Identities=32% Similarity=0.363 Sum_probs=31.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+++|.|.|++ +.-|+||||++..|+.+| ++.|+++.+.
T Consensus 4 ~~~~vI~v~s---~kGGvGKTt~a~~LA~~l-a~~g~~Vlli 41 (257)
T 1wcv_1 4 AKVRRIALAN---QKGGVGKTTTAINLAAYL-ARLGKRVLLV 41 (257)
T ss_dssp -CCCEEEECC---SSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCEEEEEEe---CCCCchHHHHHHHHHHHH-HHCCCCEEEE
Confidence 4578888876 566999999999999999 5779987764
No 17
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=93.90 E-value=0.042 Score=53.00 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=29.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+.+|.|.|++- .-|+||||++..|+.+| + .|+++.+.
T Consensus 25 ~~~~vI~v~s~---kGGvGKTT~a~~LA~~l-a-~g~~Vlli 61 (267)
T 3k9g_A 25 KKPKIITIASI---KGGVGKSTSAIILATLL-S-KNNKVLLI 61 (267)
T ss_dssp -CCEEEEECCS---SSSSCHHHHHHHHHHHH-T-TTSCEEEE
T ss_pred CCCeEEEEEeC---CCCchHHHHHHHHHHHH-H-CCCCEEEE
Confidence 45888888764 56999999999999999 5 69886543
No 18
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.78 E-value=0.048 Score=52.89 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=35.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|++|.+.++ -|.||||.+--|.+.|. ..|.+.+...|||+
T Consensus 2 ~g~~i~~eG~----~gsGKsT~~~~l~~~l~-~~~~~~v~~~rep~ 42 (213)
T 4tmk_A 2 RSKYIVIEGL----EGAGKTTARNVVVETLE-QLGIRDMVFTREPG 42 (213)
T ss_dssp CCCEEEEEEC----TTSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHHH-HcCCCcceeeeCCC
Confidence 3899999997 49999999999999994 77886678899995
No 19
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=93.73 E-value=0.032 Score=57.81 Aligned_cols=51 Identities=22% Similarity=0.197 Sum_probs=41.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhh--hcCCcEEEE---eeCCCCCCccccccC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTC---LRQPSQGPTFGIKGG 123 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~--~lg~~~~~~---lRePSlGP~FGiKGG 123 (636)
+++.|+||+- .-|+||||+|..|+.+| + +.|+++.+. +| ||+.-.||++.+
T Consensus 16 ~~~~i~v~sg---KGGvGKTTvaanLA~~l-A~~~~G~rVLLvD~D~~-~~l~~~lg~~~~ 71 (354)
T 2woj_A 16 TTHKWIFVGG---KGGVGKTTSSCSIAIQM-ALSQPNKQFLLISTDPA-HNLSDAFGEKFG 71 (354)
T ss_dssp SSCCEEEEEE---STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSS-CCHHHHHTSCCC
T ss_pred CCcEEEEEeC---CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCC-CCHHHHhCCCCC
Confidence 4566666654 66999999999999999 6 789998875 54 888888999864
No 20
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.34 E-value=0.061 Score=53.16 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=36.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.+|++|.+.++ -|.||||.+--|.+.|. ..|.+.+..+|||+
T Consensus 25 ~~~~~i~~eG~----~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~ 66 (236)
T 3lv8_A 25 MNAKFIVIEGL----EGAGKSTAIQVVVETLQ-QNGIDHITRTREPG 66 (236)
T ss_dssp -CCCEEEEEES----TTSCHHHHHHHHHHHHH-HTTCCCEEEEESSC
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHHH-hcCCCeeeeecCCC
Confidence 35999999997 49999999999999995 77988778899996
No 21
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.27 E-value=0.075 Score=48.86 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=38.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
.+|++|++||. -|.||||++--|++.|+ ..+..+ ..+|+|..|..+|
T Consensus 8 ~~~~~I~l~G~----~GsGKST~~~~L~~~l~-~~~~~~-~~~~~~~~~~~~g 54 (212)
T 2wwf_A 8 KKGKFIVFEGL----DRSGKSTQSKLLVEYLK-NNNVEV-KHLYFPNRETGIG 54 (212)
T ss_dssp BCSCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTTSHHH
T ss_pred hcCCEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCcE-EEEecCCCCCcHH
Confidence 35899999996 69999999999999995 567777 6799997655443
No 22
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=93.16 E-value=0.074 Score=54.74 Aligned_cols=53 Identities=28% Similarity=0.158 Sum_probs=41.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee--CCCCCCccccccC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKGG 123 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR--ePSlGP~FGiKGG 123 (636)
+.+|.|+||+- .-|+||||+|..|+.+| ++.|+++.+.== +||+.-.||.+-+
T Consensus 23 ~~~~~i~v~sg---KGGvGKTTvA~~LA~~l-A~~G~rVLlvD~D~~~~l~~~l~~~~~ 77 (349)
T 3ug7_A 23 KDGTKYIMFGG---KGGVGKTTMSAATGVYL-AEKGLKVVIVSTDPAHSLRDIFEQEFG 77 (349)
T ss_dssp SCSCEEEEEEC---SSSTTHHHHHHHHHHHH-HHSSCCEEEEECCTTCHHHHHHCSCCC
T ss_pred cCCCEEEEEeC---CCCccHHHHHHHHHHHH-HHCCCeEEEEeCCCCCCHHHHhCCCCC
Confidence 45778887765 55999999999999999 578999877632 5677778988753
No 23
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.75 E-value=0.066 Score=52.60 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=37.8
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh-cCCcEEEEeeCCCC
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF-LDKKVVTCLRQPSQ 114 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~-lg~~~~~~lRePSl 114 (636)
...|++|.++++ -|.||||.+--|.+.|. . .|.+++...|||.-
T Consensus 18 ~~~~~~i~~~G~----~g~GKst~~~~l~~~l~-~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITFEGI----DGSGKTTQSHLLAEYLS-EIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEEECS----TTSSHHHHHHHHHHHHH-HHHCGGGEEEEESSCS
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHh-hccCceeeEeeeCCCC
Confidence 356999999997 49999999999999995 5 79988876899973
No 24
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.38 E-value=0.13 Score=47.19 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=35.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
++|++|++|+. -|.||||++--|++.|+ ..|..+ ..+|||.-|
T Consensus 7 ~~~~~I~l~G~----~GsGKsT~~~~L~~~l~-~~~~~v-~~~~~~~~~ 49 (215)
T 1nn5_A 7 RRGALIVLEGV----DRAGKSTQSRKLVEALC-AAGHRA-ELLRFPERS 49 (215)
T ss_dssp CCCCEEEEEES----TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSCTT
T ss_pred cCCcEEEEECC----CCCCHHHHHHHHHHHHH-HcCCcE-EEeeCCCCC
Confidence 35899999996 69999999999999995 567776 678998543
No 25
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=92.08 E-value=0.035 Score=58.54 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE--EeeCCCCCCccccccCCCCCCceee
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT--CLRQPSQGPTFGIKGGAAGGGYSQV 132 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~--~lRePSlGP~FGiKGGAaGGGysqv 132 (636)
+++++++ .-|+||||++..|+.+| ++.|+++.+ + |+||+.-.||++-+ ..-.+|
T Consensus 3 ~i~~~~g----kGG~GKTt~a~~la~~l-a~~g~~vllvd~-~~~~l~~~~~~~~~---~~~~~v 58 (374)
T 3igf_A 3 LILTFLG----KSGVARTKIAIAAAKLL-ASQGKRVLLAGL-AEPVLPLLLEQTLT---PDPQQI 58 (374)
T ss_dssp EEEEEEC----SBHHHHHHHHHHHHHHH-HHTTCCEEEEEC-SCSHHHHHHTSCCC---SSCEEE
T ss_pred EEEEEeC----CCCCcHHHHHHHHHHHH-HHCCCCeEEEeC-CCCChHHhhCCCCC---CCcccc
Confidence 3555554 34999999999999999 588998743 5 99999999999843 344455
No 26
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=91.99 E-value=0.12 Score=50.58 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=31.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
++|.|.|++.+ ..-|+||||+|..|+.+| ++.|+++.+.
T Consensus 33 ~~~~i~v~~~s-~KGGvGKTT~a~nLA~~l-a~~G~rVlli 71 (298)
T 2oze_A 33 KNEAIVILNNY-FKGGVGKSKLSTMFAYLT-DKLNLKVLMI 71 (298)
T ss_dssp HCSCEEEEECC-SSSSSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCcEEEEEecc-CCCCchHHHHHHHHHHHH-HhCCCeEEEE
Confidence 47888887643 367999999999999999 5889997654
No 27
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.93 E-value=0.12 Score=53.26 Aligned_cols=51 Identities=22% Similarity=0.103 Sum_probs=38.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEe--eCCCCCCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIK 121 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~l--RePSlGP~FGiK 121 (636)
+++|.|.|++- .-|+||||+|..|+.+| ++.|+++.+.= ++|++.-.||..
T Consensus 141 ~~~kvIav~s~---KGGvGKTT~a~nLA~~L-a~~g~rVlliD~D~~~~l~~~lg~~ 193 (373)
T 3fkq_A 141 DKSSVVIFTSP---CGGVGTSTVAAACAIAH-ANMGKKVFYLNIEQCGTTDVFFQAE 193 (373)
T ss_dssp TSCEEEEEECS---STTSSHHHHHHHHHHHH-HHHTCCEEEEECCTTCCHHHHCCCS
T ss_pred CCceEEEEECC---CCCChHHHHHHHHHHHH-HhCCCCEEEEECCCCCCHHHHcCCC
Confidence 56888988864 56999999999999999 57899976532 455555555554
No 28
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.92 E-value=0.12 Score=47.22 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
|.|.|++ +.-|+||||++..|+.+| ++.|+++.+.
T Consensus 2 ~vi~v~s---~kgG~GKTt~a~~la~~l-a~~g~~vlli 36 (206)
T 4dzz_A 2 KVISFLN---PKGGSGKTTAVINIATAL-SRSGYNIAVV 36 (206)
T ss_dssp EEEEECC---SSTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEEEe---CCCCccHHHHHHHHHHHH-HHCCCeEEEE
Confidence 3455554 578999999999999999 5789886653
No 29
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.52 E-value=0.15 Score=49.14 Aligned_cols=40 Identities=33% Similarity=0.405 Sum_probs=34.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|++|.++++ -|.||||.+--|.+.|. ..|.++ ...|||.
T Consensus 5 ~g~~i~~eG~----~gsGKsT~~~~l~~~l~-~~~~~v-~~~~~p~ 44 (213)
T 4edh_A 5 TGLFVTLEGP----EGAGKSTNRDYLAERLR-ERGIEV-QLTREPG 44 (213)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-TTTCCE-EEEESSC
T ss_pred CceEEEEEcC----CCCCHHHHHHHHHHHHH-HcCCCc-ccccCCC
Confidence 5899999997 49999999999999995 678876 6889995
No 30
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.22 E-value=0.14 Score=49.15 Aligned_cols=104 Identities=15% Similarity=0.079 Sum_probs=55.0
Q ss_pred HHhHHHHHHHHHhh-cCCcE-EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 006673 435 GCVNLARHIANTKA-YGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 435 G~~NL~kHIeNi~~-fGvPv-VVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s 512 (636)
++.++.+.++.+++ .++++ -|.+|++.+..+ -+.+.++++..|.+ +. ...- --..+.++.... .
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~--~~~~~~l~~~~~~~-v~-~~Ip---------~~~~~~~a~~~g-~ 222 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKVANE--YELLDAFAKELGSQ-LI-HFVP---------RSPMVTKAEINK-Q 222 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCC--HHHHHHHHHHHTCC-EE-EEEC---------CCHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCcchh--HHHHHHHHHHcCCc-cc-ccCC---------CCcHHHHHHHcC-C
Confidence 45566667776654 67885 578899865432 23445555566765 32 2111 112344444332 1
Q ss_pred CCcccCCCCCCHHHHHHHHHH-HhCCCc-eeeCHHHHHHHHHH
Q 006673 513 PLKFLYPLDVSIKEKIDTIAR-SYGASG-VEYSEEAEKQIEMY 553 (636)
Q Consensus 513 ~fk~LY~~~~~L~eKIetIA~-IYGA~~-V~~S~~A~kqLk~i 553 (636)
+ -+.|..+.+..+-++.+|+ +-+... ...++-..++++.+
T Consensus 223 ~-v~~~~~~s~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 264 (269)
T 1cp2_A 223 T-VIEYDPTCEQAEEYRELARKVDANELFVIPKPMTQERLEEI 264 (269)
T ss_dssp C-HHHHCTTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHH
T ss_pred c-eEEECCCChHHHHHHHHHHHHHhccccCCCCCCCHHHHHHH
Confidence 1 2334455567777888888 654332 33555555555543
No 31
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.97 E-value=0.16 Score=52.40 Aligned_cols=48 Identities=29% Similarity=0.355 Sum_probs=37.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEe--eCCCCCCcccccc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCL--RQPSQGPTFGIKG 122 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~l--RePSlGP~FGiKG 122 (636)
+++++++ .-|+||||++..|+.+| ++.|+++.+.= ++||+.-.||.+-
T Consensus 17 ~i~~~sg----kGGvGKTt~a~~lA~~l-a~~g~~vllid~D~~~~l~~~l~~~~ 66 (334)
T 3iqw_A 17 RWIFVGG----KGGVGKTTTSCSLAIQL-AKVRRSVLLLSTDPAHNLSDAFSQKF 66 (334)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHH-TTSSSCEEEEECCSSCHHHHHHTSCC
T ss_pred EEEEEeC----CCCccHHHHHHHHHHHH-HhCCCcEEEEECCCCCChhHHhcccc
Confidence 4554443 67999999999999999 68899976532 6788888888764
No 32
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=90.95 E-value=0.098 Score=57.01 Aligned_cols=50 Identities=24% Similarity=0.256 Sum_probs=40.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE---eeCCCCCCccccccC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC---LRQPSQGPTFGIKGG 123 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~---lRePSlGP~FGiKGG 123 (636)
..+++++++- -|+||||++..|+.+| ++.|+++.+. . +||++-.||++-+
T Consensus 7 ~~~i~~~sgk----GGvGKTT~a~~lA~~l-A~~G~rVLlvd~D~-~~~l~~~l~~~~~ 59 (589)
T 1ihu_A 7 IPPYLFFTGK----GGVGKTSISCATAIRL-AEQGKRVLLVSTDP-ASNVGQVFSQTIG 59 (589)
T ss_dssp CCSEEEEECS----TTSSHHHHHHHHHHHH-HHTTCCEEEEECCT-TCCHHHHTTSCCC
T ss_pred CCEEEEEeCC----CcCHHHHHHHHHHHHH-HHCCCcEEEEECCC-CcCHHHHhCCccc
Confidence 3567777643 7999999999999999 5889997762 4 4898889998754
No 33
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.94 E-value=0.18 Score=52.39 Aligned_cols=52 Identities=25% Similarity=0.284 Sum_probs=41.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh--hcCCcEEEEe--eCCCCCCccccccC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA--FLDKKVVTCL--RQPSQGPTFGIKGG 123 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~--~lg~~~~~~l--RePSlGP~FGiKGG 123 (636)
+.-|++++++ .-|+||||++..|+.+| + +.|+++.+.= ++||+.-.||++-|
T Consensus 16 ~~~~i~~~~g----kGGvGKTt~a~~lA~~l-a~~~~g~~vllid~D~~~~l~~~~~~~~~ 71 (348)
T 3io3_A 16 DSLKWIFVGG----KGGVGKTTTSSSVAVQL-ALAQPNEQFLLISTDPAHNLSDAFCQKFG 71 (348)
T ss_dssp TTCSEEEEEC----STTSSHHHHHHHHHHHH-HHHCTTSCEEEEECCSSCHHHHHHTSCCC
T ss_pred CCcEEEEEeC----CCCCcHHHHHHHHHHHH-HHhcCCCeEEEEECCCCCChHHHhccccC
Confidence 4447888877 55999999999999999 6 7899976532 77888888998854
No 34
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.92 E-value=0.19 Score=47.50 Aligned_cols=34 Identities=29% Similarity=0.316 Sum_probs=26.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
|.|.|++ ..-|+||||+++.|+.+| ++.| ++.+.
T Consensus 1 kvI~v~s---~KGGvGKTT~a~~LA~~l-a~~g-~Vlli 34 (209)
T 3cwq_A 1 MIITVAS---FKGGVGKTTTAVHLSAYL-ALQG-ETLLI 34 (209)
T ss_dssp CEEEEEE---SSTTSSHHHHHHHHHHHH-HTTS-CEEEE
T ss_pred CEEEEEc---CCCCCcHHHHHHHHHHHH-HhcC-CEEEE
Confidence 3455554 577999999999999999 5778 65543
No 35
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=90.90 E-value=0.21 Score=51.15 Aligned_cols=47 Identities=34% Similarity=0.405 Sum_probs=37.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
..|+|-|++ .=|.||||||+-|+-|| ++.|+++.+.==.|....+++
T Consensus 47 ~aKVIAIaG----KGGVGKTTtavNLA~aL-A~~GkkVllID~Dpq~~s~~~ 93 (314)
T 3fwy_A 47 GAKVFAVYG----KGGIGKSTTSSNLSAAF-SILGKRVLQIGCDPKHDSTFT 93 (314)
T ss_dssp CCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEEEEESSSCCTTHH
T ss_pred CceEEEEEC----CCccCHHHHHHHHHHHH-HHCCCeEEEEecCCCCccccc
Confidence 478998874 89999999999999999 699999887666664443433
No 36
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.86 E-value=0.15 Score=49.85 Aligned_cols=115 Identities=15% Similarity=0.034 Sum_probs=65.3
Q ss_pred HHhHHHHHHHHHhh-cCCcE-EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC
Q 006673 435 GCVNLARHIANTKA-YGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 435 G~~NL~kHIeNi~~-fGvPv-VVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s 512 (636)
++.++.+.++.+++ +++++ -|.+|++.+... -+.+.++++..|.+ +. ...-. -..+.++.... .
T Consensus 160 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~~--~~~~~~l~~~~g~~-~l-~~Ip~---------~~~~~~a~~~g-~ 225 (289)
T 2afh_E 160 AANNISKGIVKYANSGSVRLGGLICNSRNTDRE--DELIIALANKLGTQ-MI-HFVPR---------DNVVQRAEIRR-M 225 (289)
T ss_dssp HHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTH--HHHHHHHHHHHTSC-EE-EEECC---------CHHHHHHHHTT-S
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEecCCchhH--HHHHHHHHHHcCcc-cc-ccCCC---------chhHHHHHHcC-C
Confidence 34566667776644 68885 578899865443 33455666667775 32 22211 12444444432 1
Q ss_pred CCcccCCCCCCHHHHHHHHHH-HhCCCc-eeeCHHHHHHHHHHHhCCCCCCCeeE
Q 006673 513 PLKFLYPLDVSIKEKIDTIAR-SYGASG-VEYSEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 513 ~fk~LY~~~~~L~eKIetIA~-IYGA~~-V~~S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
.-+.|..+.+..+-++.+|+ +.+-.. ..+.+.-.++++.+-. +|+.+=+||
T Consensus 226 -~v~~~~~~s~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 278 (289)
T 2afh_E 226 -TVIEYDPKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLM-EFGIMEVED 278 (289)
T ss_dssp -CHHHHCTTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHH-HTTSSCCCC
T ss_pred -CceeeCCCCHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHH-HhCceeeec
Confidence 12335566678888999999 655443 3355555455544444 466677775
No 37
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=90.65 E-value=0.22 Score=51.45 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=30.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh-----hcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~-----~lg~~~~~~ 108 (636)
..+|.|.|++- .-|+||||+|..|+.+|.. +.|+++.+.
T Consensus 106 ~~~~vIav~s~---KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 106 SEAYVIFISNL---KGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp CSCEEEEECCS---SSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred CCCeEEEEEeC---CCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 34778877654 6799999999999999942 368887653
No 38
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.61 E-value=0.095 Score=48.86 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCCCCcchhHHHHHHHHhhhcCCcEEEEee--CCCCCCcccccc
Q 006673 81 PLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGIKG 122 (636)
Q Consensus 81 P~GEGKtTttIGL~~aL~~~lg~~~~~~lR--ePSlGP~FGiKG 122 (636)
.-|+||||+|..|+.+| ++.|+++.+.== |||+.-.||+..
T Consensus 8 kGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~l~~~lg~~~ 50 (254)
T 3kjh_A 8 KGGVGKTTVAAGLIKIM-ASDYDKIYAVDGDPDSCLGQTLGLSI 50 (254)
T ss_dssp SSSHHHHHHHHHHHHHH-TTTCSCEEEEEECTTSCHHHHTTCCH
T ss_pred CCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCCCcChHHHhCCCc
Confidence 78999999999999999 588998765421 366666666543
No 39
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=90.55 E-value=0.11 Score=50.51 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
|-|+||+ |-.|+||||+|.||.++| ++.|+++.. +.|
T Consensus 5 k~i~Itg---t~t~vGKT~vt~~L~~~l-~~~G~~V~~--~KP 41 (228)
T 3of5_A 5 KKFFIIG---TDTEVGKTYISTKLIEVC-EHQNIKSLC--LKP 41 (228)
T ss_dssp EEEEEEE---SSSSSCHHHHHHHHHHHH-HHTTCCEEE--ECS
T ss_pred cEEEEEe---CCCCCCHHHHHHHHHHHH-HHCCCeeEE--ecc
Confidence 4577776 556999999999999999 588998764 555
No 40
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=90.42 E-value=0.2 Score=49.76 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+..|-|+||+ |-.|.||||+|.||.++| .+.|.++..
T Consensus 19 ~m~k~i~Itg---T~t~vGKT~vs~gL~~~L-~~~G~~V~~ 55 (242)
T 3qxc_A 19 FQGHMLFISA---TNTNAGKTTCARLLAQYC-NACGVKTIL 55 (242)
T ss_dssp CCCEEEEEEE---SSTTSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred hcCcEEEEEe---CCCCCcHHHHHHHHHHHH-HhCCCceEE
Confidence 5578899886 567999999999999999 588988654
No 41
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=90.36 E-value=0.17 Score=52.46 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhh-----hcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGA-----FLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~-----~lg~~~~~~ 108 (636)
..+|.|.|++- .-|+||||+|..|+.+|.. +.|+++.+.
T Consensus 109 ~~~~vIav~s~---KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 109 KSPYVIFVVNL---KGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp CSCEEEEECCC-----------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred CCceEEEEEcC---CCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 45788877764 5699999999999999942 579998765
No 42
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.03 E-value=0.25 Score=48.53 Aligned_cols=43 Identities=30% Similarity=0.485 Sum_probs=33.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc----CCcEEEEeeCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL----DKKVVTCLRQPSQG 115 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~l----g~~~~~~lRePSlG 115 (636)
.+|++|.+.++ -|.||||.+--|.+.|. .. |.++ ..+|||.-+
T Consensus 23 ~~g~~I~~eG~----~GsGKsT~~~~l~~~l~-~~~~~~g~~v-~~~rep~~t 69 (227)
T 3v9p_A 23 ARGKFITFEGI----DGAGKTTHLQWFCDRLQ-ERLGPAGRHV-VVTREPGGT 69 (227)
T ss_dssp CCCCEEEEECC----C---CHHHHHHHHHHHH-HHHGGGTCCE-EEEESSSSS
T ss_pred cCCeEEEEECC----CCCCHHHHHHHHHHHHH-hhccccceee-eeecCCCCC
Confidence 35999999996 69999999999999995 55 8876 579999533
No 43
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=89.78 E-value=0.22 Score=49.07 Aligned_cols=36 Identities=39% Similarity=0.428 Sum_probs=29.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.|.|.|++ +.-|+||||+|..|+.+| ++.|+++.+.
T Consensus 4 ~kvI~v~s---~KGGvGKTT~a~nLA~~L-a~~G~~Vlli 39 (286)
T 2xj4_A 4 TRVIVVGN---EKGGAGKSTIAVHLVTAL-LYGGAKVAVI 39 (286)
T ss_dssp CEEEEECC---SSSCTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEc---CCCCCCHHHHHHHHHHHH-HHCCCcEEEE
Confidence 45666654 678999999999999999 5789987643
No 44
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=89.23 E-value=0.16 Score=50.61 Aligned_cols=43 Identities=23% Similarity=0.160 Sum_probs=30.4
Q ss_pred hhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 60 LDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 60 ~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.++.. ++=|-|+||+ |..|+||||+|.||.++| .+.|+++..
T Consensus 18 ~~~~~~-~~m~~i~Itg---t~t~vGKT~vt~gL~~~l-~~~G~~V~~ 60 (251)
T 3fgn_A 18 ENLYFQ-SHMTILVVTG---TGTGVGKTVVCAALASAA-RQAGIDVAV 60 (251)
T ss_dssp ----CC-SSCEEEEEEE---SSTTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred HHHhcc-cCCCEEEEEe---CCCCCcHHHHHHHHHHHH-HHCCCeEEE
Confidence 344432 3346788775 567999999999999999 588988654
No 45
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=89.09 E-value=0.29 Score=52.37 Aligned_cols=36 Identities=31% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-CCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-DKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~l-g~~~~~~ 108 (636)
..+.|+|++ +-|+|||||+..|+.+| .+. |+++.+.
T Consensus 99 ~~~vI~ivG----~~GvGKTT~a~~LA~~l-~~~~G~kVllv 135 (433)
T 2xxa_A 99 PPAVVLMAG----LQGAGKTTSVGKLGKFL-REKHKKKVLVV 135 (433)
T ss_dssp SSEEEEEEC----STTSSHHHHHHHHHHHH-HHTSCCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHH-HHhcCCeEEEE
Confidence 356888876 35999999999999999 466 9887654
No 46
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.05 E-value=0.3 Score=50.06 Aligned_cols=37 Identities=24% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+.|+.|+|++ |-|+|||||+.-|+..| +..|+++.+.
T Consensus 103 ~~~~vI~ivG----~~G~GKTT~~~~LA~~l-~~~g~kVlli 139 (320)
T 1zu4_A 103 NRLNIFMLVG----VNGTGKTTSLAKMANYY-AELGYKVLIA 139 (320)
T ss_dssp TSCEEEEEES----STTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4588999997 38999999999999999 4678887654
No 47
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.30 E-value=0.41 Score=43.54 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=31.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
|++|+++|. -|.||||++--|++.|+ ..| + ++..++|
T Consensus 4 ~~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g-~-~~~~~~~ 40 (213)
T 2plr_A 4 GVLIAFEGI----DGSGKSSQATLLKDWIE-LKR-D-VYLTEWN 40 (213)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHHT-TTS-C-EEEEETT
T ss_pred CeEEEEEcC----CCCCHHHHHHHHHHHHh-hcC-C-EEEecCC
Confidence 789999996 69999999999999995 556 3 5667888
No 48
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=86.90 E-value=1.1 Score=45.43 Aligned_cols=143 Identities=17% Similarity=0.223 Sum_probs=88.8
Q ss_pred CCCCCccCCCCCcc------cccccCHHHHHHHHh--HHHHHHHHHhh--cCCcEEEE--ecC-CCCCCHHHHHHHHHHH
Q 006673 409 GGGPQVVAGKPLDH------AYLNENVALVEAGCV--NLARHIANTKA--YGANVVVA--VNM-FATDSKAELNAVRNAA 475 (636)
Q Consensus 409 GG~~~~~~g~pL~~------~l~~eNleaL~~G~~--NL~kHIeNi~~--fGvPvVVA--INr-F~tDT~aEI~~v~e~c 475 (636)
+|+.-.++|-|.-+ ...+-+..||+.|+. ++...++.+|+ ..+|+|+- .|- |.... +...+.|
T Consensus 46 ~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~----~~f~~~~ 121 (271)
T 3nav_A 46 AGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGI----DDFYQRC 121 (271)
T ss_dssp TTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhH----HHHHHHH
Confidence 57777777766532 234456778999953 55666777775 47899873 363 43332 4455678
Q ss_pred HHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeC
Q 006673 476 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYS 543 (636)
Q Consensus 476 ~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IY-----GA~~V--~~S 543 (636)
+++|+..+++.+.=- |-++.+++.+++..-.+-++-..+.+. |.++.|++ || |-.|. .++
T Consensus 122 ~~aGvdGvIipDlp~-------ee~~~~~~~~~~~gl~~I~lvap~t~~-eri~~i~~~~~gfiY~vs~~GvTG~~~~~~ 193 (271)
T 3nav_A 122 QKAGVDSVLIADVPT-------NESQPFVAAAEKFGIQPIFIAPPTASD-ETLRAVAQLGKGYTYLLSRAGVTGAETKAN 193 (271)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEEEEECTTCCH-HHHHHHHHHCCSCEEECCCC--------CC
T ss_pred HHCCCCEEEECCCCH-------HHHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHHCCCeEEEEeccCCCCcccCCc
Confidence 889998767765432 225667777765322345566665554 57777765 56 22333 256
Q ss_pred HHHHHHHHHHHhCCCCCCCeeE
Q 006673 544 EEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 544 ~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+...+-++++++.. ++|||+
T Consensus 194 ~~~~~~v~~vr~~~--~~Pv~v 213 (271)
T 3nav_A 194 MPVHALLERLQQFD--APPALL 213 (271)
T ss_dssp HHHHHHHHHHHHTT--CCCEEE
T ss_pred hhHHHHHHHHHHhc--CCCEEE
Confidence 66788899998874 799998
No 49
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=86.64 E-value=1.2 Score=39.02 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=47.5
Q ss_pred hHHHHHHHHHhhc---CCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 437 VNLARHIANTKAY---GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 437 ~NL~kHIeNi~~f---GvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++.+.++.++++ ++|++|++|+..-..+.+ .+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (181)
T 2efe_B 101 ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLF-FMETS--AKTATNVKEIFYEIARRLP 174 (181)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--SSSCTTHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCE-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 3455555555543 899999999976533222 45667888888885 54444 4668999999888887764
No 50
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=86.61 E-value=0.55 Score=42.39 Aligned_cols=37 Identities=41% Similarity=0.467 Sum_probs=29.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|.+||. -|.||||++--|++.|. ..|... +..|+|.
T Consensus 2 ~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~v-~~~~~~~ 38 (197)
T 2z0h_A 2 FITFEGI----DGSGKSTQIQLLAQYLE-KRGKKV-ILKREPG 38 (197)
T ss_dssp EEEEECS----TTSSHHHHHHHHHHHHH-HCCC-E-EEEESSC
T ss_pred EEEEECC----CCCCHHHHHHHHHHHHH-HCCCeE-EEeeCCC
Confidence 6788875 69999999999999994 568875 5779875
No 51
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.39 E-value=0.42 Score=44.45 Aligned_cols=47 Identities=21% Similarity=0.122 Sum_probs=35.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~ 117 (636)
..|++|++++. .|.||||++--|.+.+..++....-.+.|+|-.|..
T Consensus 10 ~~~~~i~l~G~----sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~ 56 (204)
T 2qor_A 10 ARIPPLVVCGP----SGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKET 56 (204)
T ss_dssp CCCCCEEEECC----TTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC
T ss_pred ccCCEEEEECC----CCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCC
Confidence 46899999984 699999999999887732244444567899887765
No 52
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.24 E-value=0.68 Score=46.80 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=29.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
..|+.|.+++- + |+|||||+.-|+..+...-|+++.+.
T Consensus 103 ~~g~vi~lvG~--~--GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 103 IHSKYIVLFGS--T--GAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CCSSEEEEEES--T--TSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCcEEEEECC--C--CCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 35889999884 2 99999999999999942368765543
No 53
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=86.04 E-value=8.5 Score=36.98 Aligned_cols=135 Identities=13% Similarity=0.160 Sum_probs=85.8
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-c-----CCC--CCCHHH-------HHHHHHHHHHcCCCeEEEcCc
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-N-----MFA--TDSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-N-----rF~--tDT~aE-------I~~v~e~c~~~Gv~~~avs~~ 488 (636)
+..+|.+.-++.+..+++.|+..+.+|.+.|+.. . .|+ .+.++. ++.+.+.|++.|+. +++-++
T Consensus 75 l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~ 153 (294)
T 3vni_A 75 LSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVD-FCLEVL 153 (294)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEec
Confidence 4457778888999999999999999999999852 2 233 233333 34455567788996 777776
Q ss_pred cc-cCc-cchhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHH-Hh------------CCCceeeCHHHH
Q 006673 489 HA-HGG-KGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR-SY------------GASGVEYSEEAE 547 (636)
Q Consensus 489 wa-~GG-eGa~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA~-IY------------GA~~V~~S~~A~ 547 (636)
.. .+- -...+-+..+++.+.. .++.++||. ..++.+=|+++.. |. |-..+.| .
T Consensus 154 ~~~~~~~~~~~~~~~~l~~~v~~--~~vg~~~D~~h~~~~g~d~~~~l~~~~~~i~~vHl~D~~r~~pG~G~id~----~ 227 (294)
T 3vni_A 154 NRFENYLINTAQEGVDFVKQVDH--NNVKVMLDTFHMNIEEDSIGGAIRTAGSYLGHLHTGECNRKVPGRGRIPW----V 227 (294)
T ss_dssp CTTTCSSCCSHHHHHHHHHHHCC--TTEEEEEEHHHHHHHCSCHHHHHHHHGGGEEEEEECCTTSCCTTSSSCCH----H
T ss_pred CcccCcccCCHHHHHHHHHHcCC--CCEEEEEEhhhhHHcCCCHHHHHHHhhhhEeEEEeCCCCCCCCCCCCcCH----H
Confidence 32 221 1234445566666642 347766654 3466777777765 43 2233433 5
Q ss_pred HHHHHHHhCCCCCCCeeEe
Q 006673 548 KQIEMYTGQGFSGLPICMA 566 (636)
Q Consensus 548 kqLk~ie~lG~~~LPVCmA 566 (636)
.-++.+++.||+. |+++=
T Consensus 228 ~~~~~L~~~gy~g-~~~lE 245 (294)
T 3vni_A 228 EIGEALADIGYNG-SVVME 245 (294)
T ss_dssp HHHHHHHHTTCCS-CEEEC
T ss_pred HHHHHHHHhCCCC-cEEEE
Confidence 5677888899976 66653
No 54
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=85.55 E-value=0.39 Score=49.47 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=27.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.|.|+ -..-|+||||+|.-|+.+| ++.|+++.+.
T Consensus 3 vIav~---s~KGGvGKTT~a~nLA~~L-A~~G~rVLlI 36 (361)
T 3pg5_A 3 TISFF---NNKGGVGKTTLSTNVAHYF-ALQGKRVLYV 36 (361)
T ss_dssp EEEBC---CSSCCHHHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred EEEEE---cCCCCCcHHHHHHHHHHHH-HhCCCcEEEE
Confidence 44444 3467999999999999999 5889997654
No 55
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.49 E-value=0.65 Score=47.45 Aligned_cols=37 Identities=27% Similarity=0.358 Sum_probs=30.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+.|++|++++- -|+|||||+.-|+..+ ..-|+++.+.
T Consensus 102 ~~~~vi~ivG~----~GsGKTTl~~~LA~~l-~~~g~kV~lv 138 (306)
T 1vma_A 102 EPPFVIMVVGV----NGTGKTTSCGKLAKMF-VDEGKSVVLA 138 (306)
T ss_dssp SSCEEEEEECC----TTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCeEEEEEcC----CCChHHHHHHHHHHHH-HhcCCEEEEE
Confidence 45889999983 5999999999999999 4667776554
No 56
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=85.47 E-value=0.63 Score=45.33 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|++|.+.++ -|.||||.+--|.+.|. . ....+|||.
T Consensus 4 ~g~~i~~eG~----~g~GKst~~~~l~~~l~-~----~~~~~~ep~ 40 (216)
T 3tmk_A 4 RGKLILIEGL----DRTGKTTQCNILYKKLQ-P----NCKLLKFPE 40 (216)
T ss_dssp CCCEEEEEEC----SSSSHHHHHHHHHHHHC-S----SEEEEESSC
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHhc-c----cceEEEecC
Confidence 5999999997 59999999999999984 2 256789994
No 57
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=84.93 E-value=0.91 Score=41.23 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=30.6
Q ss_pred hhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 61 DELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 61 ~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
++......|++|+++++ -|.||||++--|++.|+ ..|.+..
T Consensus 5 ~~~~~~~~~~~i~l~G~----~GsGKsT~~~~L~~~l~-~~~~~~~ 45 (186)
T 2yvu_A 5 TTYKCIEKGIVVWLTGL----PGSGKTTIATRLADLLQ-KEGYRVE 45 (186)
T ss_dssp ---CCCSCCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred ccccccCCCcEEEEEcC----CCCCHHHHHHHHHHHHH-hcCCeEE
Confidence 33333456999999997 69999999999999995 5566653
No 58
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=84.50 E-value=0.68 Score=49.84 Aligned_cols=35 Identities=26% Similarity=0.230 Sum_probs=29.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.+++|++++- -|+|||||+.-|+..| ...|+++.+
T Consensus 96 ~~~vI~lvG~----~GsGKTTt~~kLA~~l-~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGV----QGSGKTTTAGKLAYFY-KKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCC----TTSCHHHHHHHHHHHH-HHTTCCEEE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHH-HHcCCeEEE
Confidence 4789999874 3999999999999999 577888754
No 59
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=84.11 E-value=1 Score=42.61 Aligned_cols=38 Identities=21% Similarity=-0.053 Sum_probs=30.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+.|.+++ |.|.||||++..|...|. ..|.++.+.-+.|
T Consensus 5 ~~i~i~G----~sGsGKTTl~~~L~~~l~-~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVG----YKHSGKTTLMEKWVAAAV-REGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEEC----CTTSSHHHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHhhH-hcCCeeeEEEeCC
Confidence 4677777 459999999999999994 6788877666665
No 60
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=84.06 E-value=0.72 Score=45.27 Aligned_cols=87 Identities=13% Similarity=0.175 Sum_probs=59.3
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC--CCCcccCC
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT--QPLKFLYP 519 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~--s~fk~LY~ 519 (636)
+..+..+++|+|+++|+..-....++. .+.++++..|++ ++.+ =++-|+|-.+|-+.+++.++.+. .+++..|+
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~-vi~~--SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~y~ 179 (258)
T 3a1s_A 103 LLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIP-VVFT--SSVTGEGLEELKEKIVEYAQKNTILHRMILDYG 179 (258)
T ss_dssp HHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSC-EEEC--CTTTCTTHHHHHHHHHHHHHSSSCSCCCCCCCC
T ss_pred HHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCC-EEEE--EeeCCcCHHHHHHHHHHHhhccccCCCcccCCc
Confidence 344566899999999987432221111 256677888987 5443 34678999999999999876322 23455663
Q ss_pred CCCCHHHHHHHHHH-H
Q 006673 520 LDVSIKEKIDTIAR-S 534 (636)
Q Consensus 520 ~~~~L~eKIetIA~-I 534 (636)
..+++.|..|.. +
T Consensus 180 --~~~~~~i~~~~~~~ 193 (258)
T 3a1s_A 180 --EKVESEIKKVENFL 193 (258)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHH
Confidence 468999999988 6
No 61
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=83.90 E-value=0.83 Score=43.70 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=31.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
||+|.+-|+ -|.||||.+--|.+.|. + |.+ ++..|||.
T Consensus 2 ~kFI~~EG~----dGsGKsTq~~~L~~~L~-~-~~~-v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGP----EGSGKTTVINEVYHRLV-K-DYD-VIMTREPG 39 (205)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSC-EEEEESST
T ss_pred CCEEEEECC----CCCcHHHHHHHHHHHHH-C-CCC-EEEeeCCC
Confidence 789999886 59999999999999994 4 766 45689995
No 62
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=83.52 E-value=3.2 Score=36.63 Aligned_cols=73 Identities=19% Similarity=0.175 Sum_probs=52.1
Q ss_pred HHHHhHHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCC-CeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 433 EAGCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 433 ~~G~~NL~kHIeNi~~--fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv-~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..-+.++.+.++.++. .++|+|++.|+..-..+...+.+++++++.|+ . +..+. ++=|+|-.+|-+.+++.+.
T Consensus 116 ~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~i~ 191 (198)
T 3t1o_A 116 AESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFP-VLEAV--ATEGKGVFETLKEVSRLVL 191 (198)
T ss_dssp HHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSC-EEECB--GGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCce-EEEEe--cCCCcCHHHHHHHHHHHHH
Confidence 3446678788887754 78999999999875444445566788888888 5 44443 4557888888887777664
No 63
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=83.18 E-value=0.9 Score=49.18 Aligned_cols=36 Identities=28% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+++|++++- -|+|||||+..|+..| .+-|+++.+.
T Consensus 99 ~p~vIlivG~----~G~GKTTt~~kLA~~l-~~~G~kVllv 134 (443)
T 3dm5_A 99 KPTILLMVGI----QGSGKTTTVAKLARYF-QKRGYKVGVV 134 (443)
T ss_dssp SSEEEEEECC----TTSSHHHHHHHHHHHH-HTTTCCEEEE
T ss_pred CCeEEEEECc----CCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 4679999884 5999999999999999 4779887554
No 64
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=82.95 E-value=5 Score=40.21 Aligned_cols=66 Identities=14% Similarity=0.027 Sum_probs=46.2
Q ss_pred HHHHHhhcCCcEEEEecCCCCC-CHHH-HHHHHHHHHHcC--CCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 442 HIANTKAYGANVVVAVNMFATD-SKAE-LNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tD-T~aE-I~~v~e~c~~~G--v~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
.++.++++++|+|+++|+..-. ..++ .+.+.++++..+ .. +..+ =+.-|+|-.+|-+.+.+.+.+.
T Consensus 114 ~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~-i~~v--SA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 114 YQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTE-IVPI--SALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp HHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCC-EEEC--BTTTTBSHHHHHHHHHHHSCBC
T ss_pred HHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCe-EEEE--eCCCCCCHHHHHHHHHHhCccC
Confidence 3677778999999999997653 3333 334455566665 33 3333 3677899999999999988654
No 65
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=82.62 E-value=1.4 Score=43.88 Aligned_cols=42 Identities=21% Similarity=0.197 Sum_probs=34.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
++||+.++..- |-|.||||+++.|+..| ..-|+++.+..=+|
T Consensus 3 ~~g~l~I~~~~---kgGvGKTt~a~~la~~l-~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 3 ARGRLKVFLGA---APGVGKTYAMLQAAHAQ-LRQGVRVMAGVVET 44 (228)
T ss_dssp CCCCEEEEEES---STTSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred CCceEEEEEEC---CCCCcHHHHHHHHHHHH-HHCCCCEEEEEeCC
Confidence 46888666653 67999999999999999 57899988777766
No 66
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=82.49 E-value=1.1 Score=44.05 Aligned_cols=44 Identities=20% Similarity=0.363 Sum_probs=34.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPT 117 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~ 117 (636)
..|.++++|+ |.|.||||..++++.-+. .-|+++.+. +|+.+.-
T Consensus 10 ~~G~i~litG----~mGsGKTT~ll~~~~r~~-~~g~kVli~--~~~~d~r 53 (223)
T 2b8t_A 10 KIGWIEFITG----PMFAGKTAELIRRLHRLE-YADVKYLVF--KPKIDTR 53 (223)
T ss_dssp -CCEEEEEEC----STTSCHHHHHHHHHHHHH-HTTCCEEEE--EECCCGG
T ss_pred CCcEEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEEE--EeccCch
Confidence 4599999998 579999999999998884 558877543 7777643
No 67
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=82.17 E-value=0.81 Score=43.60 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=30.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
+|++|.+.++ -|.||||.+-.|++.|. + +.++|||.-.+
T Consensus 1 ~~~~i~~~G~----~g~GKtt~~~~l~~~l~---~---~~~~~Ep~~~~ 39 (241)
T 2ocp_A 1 GPRRLSIEGN----IAVGKSTFVKLLTKTYP---E---WHVATEPVATW 39 (241)
T ss_dssp CCEEEEEEEC----TTSSHHHHHHHHHHHCT---T---SEEECCCGGGT
T ss_pred CCeEEEEEcC----CCCCHHHHHHHHHHHcC---C---Ceeeecchhhh
Confidence 3789999997 79999999999988883 2 35688885443
No 68
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=82.11 E-value=2.2 Score=38.26 Aligned_cols=71 Identities=13% Similarity=0.012 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHhh------cCCcEEEEecCCCCCC-HHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 436 CVNLARHIANTKA------YGANVVVAVNMFATDS-KAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 436 ~~NL~kHIeNi~~------fGvPvVVAINrF~tDT-~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
+.++.+.++.+++ .++|+||++|+..-.. +.+ .+.+++++++.|+. +..+....+ |+|-.+|-+.+++.
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~-~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 112 FESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD-FFDVSANPP-GKDADAPFLSIATT 189 (208)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE-EEECCC--------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE-EEEeccCCC-CcCHHHHHHHHHHH
Confidence 3455566666655 5899999999976544 222 35677888888875 555544331 67888888777776
Q ss_pred hh
Q 006673 507 CE 508 (636)
Q Consensus 507 ~e 508 (636)
+.
T Consensus 190 ~~ 191 (208)
T 2yc2_C 190 FY 191 (208)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 69
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=82.01 E-value=0.88 Score=40.40 Aligned_cols=70 Identities=20% Similarity=0.139 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI-~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
++...++.+++.++|+|++.|+-.-....++ +.+.+++++.|.. +..+. ++=|+|-.+|-+.+++.+.+.
T Consensus 100 ~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 100 RNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCC-eEEEE--ecCCCCHHHHHHHHHHHHHhc
Confidence 3445566677789999999998532111111 1345667777886 55444 566899999999999988653
No 70
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=82.01 E-value=1.5 Score=43.03 Aligned_cols=81 Identities=19% Similarity=0.173 Sum_probs=51.0
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI-~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
...+..+++|+||++|+..--...++ ..+.++++..|++ ++.+. ++-|+|-.+|-+.+.+. +.+ .. .|+.
T Consensus 103 ~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~~-~~~-~~---~y~~- 173 (256)
T 3iby_A 103 TSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCS-VIPIQ--AHKNIGIPALQQSLLHC-SQK-IK---PLKL- 173 (256)
T ss_dssp HHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSC-EEECB--GGGTBSHHHHHHHHHTC-CSC-CC---CCCC-
T ss_pred HHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHhh-hcC-cc---cCCH-
Confidence 34466789999999999643211111 1234566678887 54443 56689999999999887 432 21 5544
Q ss_pred CCHHHHHHHHHH
Q 006673 522 VSIKEKIDTIAR 533 (636)
Q Consensus 522 ~~L~eKIetIA~ 533 (636)
.+++.|..|..
T Consensus 174 -~~e~~i~~i~~ 184 (256)
T 3iby_A 174 -SLSVAAQQILN 184 (256)
T ss_dssp -CCCHHHHHHHH
T ss_pred -HHHHHHHHHHH
Confidence 45666666655
No 71
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.78 E-value=0.79 Score=43.01 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=30.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
+.|++|.++| |.|.||||+.--|.+-+...++......-|.|.-|
T Consensus 6 ~~g~~i~l~G----psGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~ 50 (208)
T 3tau_A 6 ERGLLIVLSG----PSGVGKGTVREAVFKDPETSFDYSISMTTRLPREG 50 (208)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTT
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCc
Confidence 5699999987 67999999998887666211333334455665544
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=81.69 E-value=4.6 Score=34.13 Aligned_cols=57 Identities=18% Similarity=0.092 Sum_probs=39.2
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+++++|+-.-.. +...+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 107 ~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 107 DDVPMVLVGNKSDLAARTVESRQAQDLARSYGIP-YIETS--AKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHHHH
Confidence 4899999999976432 12234566777888886 44333 4567888888888877664
No 73
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=81.20 E-value=5 Score=38.78 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=42.8
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
-++|+||+.|+-.-..+.+++.+++++++. ++. +..+. ++=|+|-.+|-+.+++.++
T Consensus 197 ~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~e~S--Ak~g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQ-VVETS--ARSNVNVDLAFSTLVQLID 254 (255)
T ss_dssp TTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcccccccHHHHHHHHHHHhcCCCe-EEEEE--CCCCCCHHHHHHHHHHHhc
Confidence 479999999998876777888888888864 775 44333 5667888888887776653
No 74
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=81.10 E-value=1.3 Score=42.77 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=34.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
..|++|.++++ -|.||||.+--|++.|+ . |.+. +..|+|.-.|
T Consensus 24 ~~g~~i~i~G~----~GsGKsT~~~~l~~~l~-~-~~~~-~~~~~p~~~~ 66 (229)
T 4eaq_A 24 AMSAFITFEGP----EGSGKTTVINEVYHRLV-K-DYDV-IMTREPGGVP 66 (229)
T ss_dssp CCCEEEEEECC----TTSCHHHHHHHHHHHHT-T-TSCE-EEECTTTTCH
T ss_pred CCCeEEEEEcC----CCCCHHHHHHHHHHHHh-c-CCCc-eeecCCCCCc
Confidence 46999999996 49999999999999995 5 6654 5678886443
No 75
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=81.07 E-value=8.5 Score=37.63 Aligned_cols=134 Identities=13% Similarity=0.147 Sum_probs=79.4
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-----cCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcCc
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSH 488 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-----NrF~t---DT~aE-------I~~v~e~c~~~Gv~~~avs~~ 488 (636)
+..+|.+.-++.+..+++.|+..+.+|.+.||.- .+|+. ++++. ++.+.+.+++.|+. +++-++
T Consensus 94 l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~ 172 (309)
T 2hk0_A 94 LSSEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDKAGDYARGVEGINGIADFANDLGIN-LCIEVL 172 (309)
T ss_dssp SSCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCE-EEEeec
Confidence 3446667778889999999999999999999953 33422 33333 33444556678996 888777
Q ss_pred cccCc--cchhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHH-HhC------------CCceeeCHHHH
Q 006673 489 HAHGG--KGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR-SYG------------ASGVEYSEEAE 547 (636)
Q Consensus 489 wa~GG--eGa~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA~-IYG------------A~~V~~S~~A~ 547 (636)
+...+ -...+-+.++++.+.. .++.+++|. ..++.+=|+.... |.. ...+. -.
T Consensus 173 ~~~~~~~~~~~~~~~~l~~~v~~--~~vg~~~D~~H~~~~g~d~~~~l~~~~~~i~~vHl~D~~r~~~G~G~id----~~ 246 (309)
T 2hk0_A 173 NRFENHVLNTAAEGVAFVKDVGK--NNVKVMLDTFHMNIEEDSFGDAIRTAGPLLGHFHTGESNRRVPGKGRMP----WH 246 (309)
T ss_dssp CTTTCSSCCSHHHHHHHHHHHTC--TTEEEEEEHHHHHHHCSCHHHHHHHHGGGEEEEEECCTTSCCTTSSCCC----HH
T ss_pred ccccccccCCHHHHHHHHHHcCC--CCeEEEEehhhHhhcCcCHHHHHHHHHhhEEEEEeCCCCCCCCcCCccC----HH
Confidence 53211 1234445566666642 357777654 3345555655544 431 11222 23
Q ss_pred HHHHHHHhCCCCCCCeeE
Q 006673 548 KQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 548 kqLk~ie~lG~~~LPVCm 565 (636)
.-++.+++.||+. ||++
T Consensus 247 ~~~~~L~~~gy~g-~i~l 263 (309)
T 2hk0_A 247 EIGLALRDINYTG-AVIM 263 (309)
T ss_dssp HHHHHHHHTTCCS-EEEE
T ss_pred HHHHHHHHcCCCC-cEEE
Confidence 4556666777764 4444
No 76
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=80.94 E-value=8.5 Score=37.86 Aligned_cols=142 Identities=10% Similarity=0.044 Sum_probs=83.6
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cC-----CCC--CCHHH-------HHHHHHHHHHcCCCeEEEcC-
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NM-----FAT--DSKAE-------LNAVRNAAMAAGAFDAVVCS- 487 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-Nr-----F~t--DT~aE-------I~~v~e~c~~~Gv~~~avs~- 487 (636)
+..+|.+.-++.+..+++.|+-.+.+|.++||.- .. |.. ++++. +..+.+.|++.|+..+++-+
T Consensus 101 l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~lE~~ 180 (316)
T 3qxb_A 101 FLAPTLELQSLGYQHLKRAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLYVEPV 180 (316)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEec
Confidence 4457778888999999999999999999999742 11 111 22322 33455566788995245544
Q ss_pred -ccccCccchhHHHHHHHHHhhc-CCCCCcccCCC-----------CCCHHHHHHHHHH-Hh--CCCceee---------
Q 006673 488 -HHAHGGKGAVDLGIAVQRACEN-VTQPLKFLYPL-----------DVSIKEKIDTIAR-SY--GASGVEY--------- 542 (636)
Q Consensus 488 -~wa~GGeGa~eLA~aVv~a~e~-~~s~fk~LY~~-----------~~~L~eKIetIA~-IY--GA~~V~~--------- 542 (636)
++..=+.- .+-+.++++.++. .+.++.+++|. +.++.+=|++... |. ..++...
T Consensus 181 ~~~~~~~~t-~~~~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~i~~vHlkD~~~~~d~h~~~~ 259 (316)
T 3qxb_A 181 PLATEFPSS-AADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWIAAYHIQQTDGQLDRHWSFT 259 (316)
T ss_dssp SCTTBSSCS-HHHHHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGGEEEEEECBCCSSSCCCBCTT
T ss_pred CCccccCCC-HHHHHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhhheEEeeecCCCCcCccCCCC
Confidence 33211222 2334455566632 12346665543 3466666776654 32 1222111
Q ss_pred ---CHHHHHHHHHHHhCCCCCCCeeEe
Q 006673 543 ---SEEAEKQIEMYTGQGFSGLPICMA 566 (636)
Q Consensus 543 ---S~~A~kqLk~ie~lG~~~LPVCmA 566 (636)
.-.-..-++.+++.||+.+|||+=
T Consensus 260 G~G~id~~~i~~~L~~~gy~g~~v~lE 286 (316)
T 3qxb_A 260 QPGVVTPQRLQDFWDKYALTDQTFFAE 286 (316)
T ss_dssp SCSSCCHHHHHHHHHHTTCSSCCEEEC
T ss_pred CCceECHHHHHHHHHHcCCCCceEEEE
Confidence 113456677889999999999883
No 77
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=80.71 E-value=1.6 Score=43.47 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=79.0
Q ss_pred CCCCCccCCCCCcc------cccccCHHHHHHHH--hHHHHHHHHHhhc--CCcEEE--EecC-CCCCCHHHHHHHHHHH
Q 006673 409 GGGPQVVAGKPLDH------AYLNENVALVEAGC--VNLARHIANTKAY--GANVVV--AVNM-FATDSKAELNAVRNAA 475 (636)
Q Consensus 409 GG~~~~~~g~pL~~------~l~~eNleaL~~G~--~NL~kHIeNi~~f--GvPvVV--AINr-F~tDT~aEI~~v~e~c 475 (636)
+|+....+|-|.-+ ...+-+..+|+.|+ .++...++.+++. ++|+++ ..|. |.... +...+.|
T Consensus 43 ~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~----~~f~~~~ 118 (262)
T 2ekc_A 43 NGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL----EKFCRLS 118 (262)
T ss_dssp TTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH----HHHHHHH
T ss_pred cCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH----HHHHHHH
Confidence 45665556655532 23334556788886 5677888888874 899988 3342 22222 2334567
Q ss_pred HHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-H----hC-----CCcee--eC
Q 006673 476 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-S----YG-----ASGVE--YS 543 (636)
Q Consensus 476 ~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-I----YG-----A~~V~--~S 543 (636)
.+.|+..+.+.+.= .+-.+.+++.+.+..-.+-++...+.+ .+.++.|++ . |- ..|.. ++
T Consensus 119 ~~aG~dgvii~dl~-------~ee~~~~~~~~~~~gl~~i~l~~p~t~-~~rl~~ia~~a~gfiy~vs~~g~TG~~~~~~ 190 (262)
T 2ekc_A 119 REKGIDGFIVPDLP-------PEEAEELKAVMKKYVLSFVPLGAPTST-RKRIKLICEAADEMTYFVSVTGTTGAREKLP 190 (262)
T ss_dssp HHTTCCEEECTTCC-------HHHHHHHHHHHHHTTCEECCEECTTCC-HHHHHHHHHHCSSCEEEESSCC---------
T ss_pred HHcCCCEEEECCCC-------HHHHHHHHHHHHHcCCcEEEEeCCCCC-HHHHHHHHHhCCCCEEEEecCCccCCCCCcC
Confidence 88999755554321 133555666665421122344454444 356666666 3 22 11111 22
Q ss_pred -HHHHHHHHHHHhCCCCCCCeeE
Q 006673 544 -EEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 544 -~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+...+.++++.+.- ++|||+
T Consensus 191 ~~~~~~~v~~vr~~~--~~pv~v 211 (262)
T 2ekc_A 191 YERIKKKVEEYRELC--DKPVVV 211 (262)
T ss_dssp CHHHHHHHHHHHHHC--CSCEEE
T ss_pred cccHHHHHHHHHhhc--CCCEEE
Confidence 44567788888753 789987
No 78
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=80.70 E-value=1.2 Score=44.71 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.|+.|.+++ |-|+||||++.-|+..+ ...|++..+.
T Consensus 97 ~~~~i~i~g----~~G~GKTT~~~~la~~~-~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYY-KGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEEC----CTTTTHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCeEEEe
Confidence 588888885 45999999999999999 4667776543
No 79
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=80.32 E-value=3.8 Score=43.13 Aligned_cols=94 Identities=26% Similarity=0.237 Sum_probs=59.0
Q ss_pred CCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhh--cCCcEE-EEecCCCCCCHH
Q 006673 390 GLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKA--YGANVV-VAVNMFATDSKA 466 (636)
Q Consensus 390 gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~--fGvPvV-VAINrF~tDT~a 466 (636)
|.+|+++|||.... +++--|.+.. |+|+ ++..- .+...+..++. .|++|+ +++|.|.-|.++
T Consensus 251 g~~p~~vILv~~~~-~g~i~~~~~~----~~p~------l~~~i----~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~ 315 (349)
T 2obn_A 251 GSQPTQLVLVHRAG-QTHNGNNPHV----PIPP------LPEVI----RLYETVASGGGAFGTVPVVGIALNTAHLDEYA 315 (349)
T ss_dssp HHCCSEEEEEEETT-CCBCSSCTTS----BCCC------HHHHH----HHHHHHHHTTTTSCCCCEEEEEEECTTSCHHH
T ss_pred HcCCCeEEEEECCC-CceECCCCcc----CCCC------HHHHH----HHHHHHHHhhccCCCCcEEEEEEECCCCCHHH
Confidence 46799999988532 4444454431 3333 22211 23333444455 788877 678999998888
Q ss_pred HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 006673 467 ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 467 EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
+-+.+++.-++.|++ +.+.+.. |+-.|.++++
T Consensus 316 ~~~~~~~ie~~~glP---v~d~~r~---g~~~l~~~~~ 347 (349)
T 2obn_A 316 AKEAIAHTIAETGLP---CTDVVRF---GADVLLDAVM 347 (349)
T ss_dssp HHHHHHHHHHHHCSC---EECHHHH---CSHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---EEEEecC---CHHHHHHHHh
Confidence 777888887889998 4566666 4555555554
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=79.87 E-value=2.2 Score=38.21 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=46.4
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++.+.++.+++ -++|+||++|+-.-..+.+ .+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 111 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 111 AAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFE-FFEAS--AKENINVKQVFERLVDVIC 184 (189)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 344455555555 4899999999986543222 34567788888875 44433 5668898898888887664
No 81
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=79.80 E-value=1.6 Score=44.23 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=28.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
++.|.+++ |-|+||||++.-|+..+ ...|+++.+.
T Consensus 98 ~~vi~i~G----~~G~GKTT~~~~la~~~-~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVG----VQGTGKTTTAGKLAYFY-KKKGFKVGLV 132 (297)
T ss_dssp SEEEEEEC----SSCSSTTHHHHHHHHHH-HHTTCCEEEE
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 78888875 45999999999999999 4678876654
No 82
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=79.70 E-value=0.96 Score=40.35 Aligned_cols=26 Identities=23% Similarity=0.211 Sum_probs=22.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+++|++||. .|.||||++--|++.|+
T Consensus 3 ~~~i~l~G~----~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGG----SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECC----TTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 679999996 79999999999988773
No 83
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=79.68 E-value=2.7 Score=36.99 Aligned_cols=70 Identities=14% Similarity=0.083 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++.+.++.+++ .++|+||++|+..-..+. ..+.++++|++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 96 FDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIK-FMETS--AKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCE-EEECC--C---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3455555555554 489999999997653221 134556788888885 54444 3457888888777776654
No 84
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.46 E-value=1.5 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=27.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.++.|.+++ |-|+||||++..|+..|. ..|+++.+
T Consensus 97 ~~~vi~i~G----~~GsGKTT~~~~LA~~l~-~~g~~Vll 131 (425)
T 2ffh_A 97 DRNLWFLVG----LQGSGKTTTAAKLALYYK-GKGRRPLL 131 (425)
T ss_dssp SSEEEEEEC----CTTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCeEEEEEC----CCCCCHHHHHHHHHHHHH-HcCCeEEE
Confidence 477888875 469999999999999994 56776554
No 85
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=78.92 E-value=4.1 Score=34.96 Aligned_cols=69 Identities=10% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHHHhh---cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 438 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
++.+.++.+++ .++|+++++|+-.-+. ....+.+.+++++.|+. +..+. ++=|+|-.+|-+.+.+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 93 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 33344444433 5899999999976421 12234556777888886 54444 45678988888888887753
No 86
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=78.68 E-value=16 Score=35.18 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=66.2
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEec---CCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcCc--
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVN---MFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSH-- 488 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAIN---rF~t---DT~aE-------I~~v~e~c~~~Gv~~~avs~~-- 488 (636)
+..+|.+..++.+..+++.|+..+.+|.+.||..- .|.. ++++. ++.+.+.|++.|+. +++-++
T Consensus 91 l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~ 169 (287)
T 3kws_A 91 ILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VIFEPLNR 169 (287)
T ss_dssp TTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EEECCCCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCc
Confidence 44567778888999999999999999999988732 2321 45544 34455567788997 777755
Q ss_pred cccCccchhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHH
Q 006673 489 HAHGGKGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (636)
Q Consensus 489 wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA~ 533 (636)
|...--...+-+..+++.+.. .++.++||. ..++.+=|+....
T Consensus 170 ~~~~~~~~~~~~~~ll~~v~~--~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 218 (287)
T 3kws_A 170 KECFYLRQVADAASLCRDINN--PGVRCMGDFWHMTWEETSDMGAFISGGE 218 (287)
T ss_dssp TTCSSCCCHHHHHHHHHHHCC--TTEEEEEEHHHHHHHCSCHHHHHHHHGG
T ss_pred ccCcccCCHHHHHHHHHHcCC--CCeeEEeehHHHHhcCCCHHHHHHHhhh
Confidence 321111233445556666542 347776653 3345555555443
No 87
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=78.66 E-value=1 Score=42.58 Aligned_cols=30 Identities=43% Similarity=0.375 Sum_probs=25.9
Q ss_pred CCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 82 LGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 82 ~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
-|.||||.+--|.+.|. ..|.++ +..|||.
T Consensus 9 DGsGKsTq~~~L~~~L~-~~g~~v-~~treP~ 38 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQYLE-KRGKKV-ILKREPG 38 (197)
T ss_dssp TTSSHHHHHHHHHHHHH-HTTCCE-EEEESSC
T ss_pred CCCCHHHHHHHHHHHHH-HCCCcE-EEEECCC
Confidence 69999999999999994 678875 6689995
No 88
>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A
Probab=78.55 E-value=5.1 Score=42.51 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=76.4
Q ss_pred HHHHHhHHHHHHHHHhhcCCcEEEEecCCC------C-------------------------------------------
Q 006673 432 VEAGCVNLARHIANTKAYGANVVVAVNMFA------T------------------------------------------- 462 (636)
Q Consensus 432 L~~G~~NL~kHIeNi~~fGvPvVVAINrF~------t------------------------------------------- 462 (636)
-++.++|+++||+|+.++|+++|+. |--+ |
T Consensus 99 r~~~ie~~k~~i~~aa~lGi~~v~~-nf~p~~~w~rt~~~~~~~~G~~~~~f~~~~~~~~d~~~~~~~~pg~~~~~~~~~ 177 (386)
T 3bdk_A 99 RDALIENYKTSIRNVGAAGIPVVCY-NFMPVFDWTRSDLHHPLPDGSTSLAFLKSDLAGVDPVADDLNLPGWDSSYSKEE 177 (386)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEE-CCCSSCSCCCSEEEEECTTSCEEEEEEGGGGSSCCC--------------CCHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-cCcccccccccccccccCCCccccccchhhhhcccchhhccCCCCccccccHHH
Confidence 6788999999999999999998764 4111 0
Q ss_pred ----------C-CHHH--------HHHHHHHHHHcCCCeEEEcCc---cccCc----cchhHHHHHHHHHhhcCCCCCcc
Q 006673 463 ----------D-SKAE--------LNAVRNAAMAAGAFDAVVCSH---HAHGG----KGAVDLGIAVQRACENVTQPLKF 516 (636)
Q Consensus 463 ----------D-T~aE--------I~~v~e~c~~~Gv~~~avs~~---wa~GG----eGa~eLA~aVv~a~e~~~s~fk~ 516 (636)
+ +++| ++.|.+.|++.|+. .++-.+ |.--| --..+-.+++++.++. ..+..
T Consensus 178 ~~~~~~~y~~~~~~e~~w~~l~~~L~~i~~~Aee~GV~-Laiep~dpp~~~~Gl~riv~t~e~~~rll~~vds--p~~gl 254 (386)
T 3bdk_A 178 MKAIIENYRQNISEEDLWANLEYFIKAILPTAEEAGVK-MAIHPDDPPYGIFGLPRIITGQEAVERFLNLYDS--EHNGI 254 (386)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHSSSCE-EEECCCSSSSCCTTCCCCCCSHHHHHHHHHTTCS--TTEEE
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCCcccccccCCceeCCHHHHHHHHHhcCC--CCEEE
Confidence 1 3344 67777888889996 776543 32112 2234445555555543 22444
Q ss_pred cCC-------CCCCHHHHHHHHH--H-Hh--CCCceeeCH---------------HHHHHHHHHHhCCCC
Q 006673 517 LYP-------LDVSIKEKIDTIA--R-SY--GASGVEYSE---------------EAEKQIEMYTGQGFS 559 (636)
Q Consensus 517 LY~-------~~~~L~eKIetIA--~-IY--GA~~V~~S~---------------~A~kqLk~ie~lG~~ 559 (636)
+|+ .+.++.+=|++-+ . |. ..++|.... .-..-++.|.+.||+
T Consensus 255 ~lDtG~l~~~~~~D~~~~i~~~~~~~RI~hvHlkDv~~~~~gf~e~~~g~g~G~vD~~~i~~aL~~~gY~ 324 (386)
T 3bdk_A 255 TMCVGSYASDPKNDVLAMTEYALKRNRINFMHTRNVTAGAWGFQETAHLSQAGDIDMNAVVKLLVDYDWQ 324 (386)
T ss_dssp EEEHHHHHTSTTCCHHHHHHHHHHTTCEEEEECCCEEEETTEEEECCSSGGGSSCCHHHHHHHHHHTTCC
T ss_pred EEccCchhhcCCCCHHHHHHHhCCcCeEEEEeecCCCCCCCCccccCCCcCCCCcCHHHHHHHHHHhCCc
Confidence 443 3567788888876 3 33 334443221 345567788888886
No 89
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=78.51 E-value=6.4 Score=34.57 Aligned_cols=59 Identities=10% Similarity=-0.063 Sum_probs=41.9
Q ss_pred hhcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCcccc-CccchhHHHHHHHHHhh
Q 006673 447 KAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRACE 508 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~~~avs~~wa~-GGeGa~eLA~aVv~a~e 508 (636)
...++|+||++|+..-.. +...+.++++|++.++. +..+. ++ -|+|-.+|-+.+++.+.
T Consensus 120 ~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIP-YIETS--AKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCC-EEEEB--CSSSCBSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCe-EEEec--cCCCCCCHHHHHHHHHHHHh
Confidence 458999999999976432 22334567788888886 44333 45 78999998888887764
No 90
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=78.47 E-value=1.3 Score=47.26 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=28.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+.|++++ | -|+|||||+..|+..+. +.|+++.+.
T Consensus 99 ~~vI~ivG--~--~GvGKTTla~~La~~l~-~~G~kVllv 133 (432)
T 2v3c_C 99 QNVILLVG--I--QGSGKTTTAAKLARYIQ-KRGLKPALI 133 (432)
T ss_dssp CCCEEEEC--C--SSSSTTHHHHHHHHHHH-HHHCCEEEE
T ss_pred CeEEEEEC--C--CCCCHHHHHHHHHHHHH-HcCCeEEEE
Confidence 45888888 3 39999999999999994 678887654
No 91
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=78.12 E-value=4.9 Score=34.74 Aligned_cols=70 Identities=11% Similarity=-0.007 Sum_probs=44.7
Q ss_pred HhHHHHHHHHHhhc----CCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKAY----GANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~f----GvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++...++.++++ ++|+|+++|+..-..+.+ .+..++++.+.|.. +..+ =++=|+|-.+|-+.+++.+.
T Consensus 93 ~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 93 FESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCK-FIET--SATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCe-EEEE--ecCCCCCHHHHHHHHHHHHH
Confidence 34444445555543 899999999976543222 34456777777875 4433 35668898888888887764
No 92
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=78.08 E-value=11 Score=37.57 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=45.1
Q ss_pred HHHhhcCCcEEEEecCCCCCC-HHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 444 ANTKAYGANVVVAVNMFATDS-KAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT-~aEI-~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+.+++.+.|+|+++|+-.-.. .+++ +.+.++++..|...++ .+-+.=|+|-.+|.+.+.+.+.+
T Consensus 110 ~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i--~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 110 NKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIV--PISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp HHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEE--ECCTTTTTTHHHHHHHHHTTCCB
T ss_pred HHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceE--EEECCCCCCHHHHHHHHHHhCCc
Confidence 345568999999999988766 4555 5566666666753232 34466788999999998877643
No 93
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=77.77 E-value=1.4 Score=40.09 Aligned_cols=41 Identities=20% Similarity=0.411 Sum_probs=30.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
+|++|.++|+ -|.||||.+--|++.|+ |.+ ++.+++|.-++
T Consensus 3 ~~~~I~l~G~----~GsGKsT~~~~L~~~l~---g~~-~~~~~~~~~~~ 43 (204)
T 2v54_A 3 RGALIVFEGL----DKSGKTTQCMNIMESIP---ANT-IKYLNFPQRST 43 (204)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHTSC---GGG-EEEEESSCTTS
T ss_pred CCcEEEEEcC----CCCCHHHHHHHHHHHHC---CCc-eEEEecCCCCC
Confidence 4889999996 69999999988877661 344 45578876443
No 94
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=77.59 E-value=2.4 Score=37.89 Aligned_cols=37 Identities=30% Similarity=0.372 Sum_probs=28.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|.+||. -|.||||.+--|++.|. ..|... +..|+|+
T Consensus 2 ~I~l~G~----~GsGKsT~~~~L~~~l~-~~g~~~-i~~d~~~ 38 (195)
T 2pbr_A 2 LIAFEGI----DGSGKTTQAKKLYEYLK-QKGYFV-SLYREPG 38 (195)
T ss_dssp EEEEECS----TTSCHHHHHHHHHHHHH-HTTCCE-EEEESSC
T ss_pred EEEEECC----CCCCHHHHHHHHHHHHH-HCCCeE-EEEeCCC
Confidence 6788886 69999999999999884 457764 4668874
No 95
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=77.52 E-value=5.1 Score=35.54 Aligned_cols=69 Identities=12% Similarity=0.099 Sum_probs=45.6
Q ss_pred HHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 438 NLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
++.+.++.++. -++|+|+++|+..-..+. +.+..++++.+.++. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 106 ~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~~ 179 (196)
T 3tkl_A 106 NVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FLETS--AKNATNVEQSFMTMAAEIKK 179 (196)
T ss_dssp THHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEEEC--TTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 34444444443 489999999997643332 234567888889987 44433 46688888888777777653
No 96
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=77.51 E-value=6 Score=39.26 Aligned_cols=129 Identities=10% Similarity=0.054 Sum_probs=75.7
Q ss_pred ccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-----cC
Q 006673 385 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM 459 (636)
Q Consensus 385 kcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-----Nr 459 (636)
.++..||+|-+++.+. |-. .. -.+..+|.+.-++.+..++++|+..+.+|.++|+.. .+
T Consensus 73 ~l~~~gL~~~~i~~~~-------~~~-~~--------~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~ 136 (335)
T 2qw5_A 73 YLDSEGLENVKISTNV-------GAT-RT--------FDPSSNYPEQRQEALEYLKSRVDITAALGGEIMMGPIVIPYGV 136 (335)
T ss_dssp HHHHTTCTTCEEEEEC-------CCC-SS--------SCTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC
T ss_pred HHHHCCCCcceeEEEe-------ccC-CC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCcccc
Confidence 4788899976554431 110 00 123446667788899999999999999999999642 45
Q ss_pred CCCC--------------CHHH-------HHHHHHHHHHcCCCeEEEcCccccCc--cchhHHHHHHHHHhhcCCCCCcc
Q 006673 460 FATD--------------SKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGG--KGAVDLGIAVQRACENVTQPLKF 516 (636)
Q Consensus 460 F~tD--------------T~aE-------I~~v~e~c~~~Gv~~~avs~~wa~GG--eGa~eLA~aVv~a~e~~~s~fk~ 516 (636)
|+.. +++. ++.+.+.|++.|+. +++-++....+ -...+-+.++++.+. +..+.+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~t~~~~~~ll~~v~--~~~vgl 213 (335)
T 2qw5_A 137 FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LAIEPITHWETPGPNKLSQLIEFLKGVK--SKQVGV 213 (335)
T ss_dssp CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEECCCCTTTCSSCCSHHHHHHHHTTCC--CTTEEE
T ss_pred ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccccccCCHHHHHHHHHhcC--CCCeeE
Confidence 5432 3433 34455667788996 77877632111 112333334444442 234776
Q ss_pred cCCC------CCCHH---HHHHHHH
Q 006673 517 LYPL------DVSIK---EKIDTIA 532 (636)
Q Consensus 517 LY~~------~~~L~---eKIetIA 532 (636)
+||. ..++. +=|++..
T Consensus 214 ~~D~~H~~~~g~d~~~~~~~l~~~~ 238 (335)
T 2qw5_A 214 VIDSAHEILDGEGPEIFKTQVEYLA 238 (335)
T ss_dssp EEEHHHHHHHCCCHHHHHHHHHHHH
T ss_pred EEecccchhccCChHHHHHHHHHhC
Confidence 6653 23455 5556655
No 97
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=77.46 E-value=0.77 Score=46.36 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=70.5
Q ss_pred ccccCHHHHHHHH--hHHHHHHHHHhhc-CCcEEEE--ec-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchh
Q 006673 424 YLNENVALVEAGC--VNLARHIANTKAY-GANVVVA--VN-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAV 497 (636)
Q Consensus 424 l~~eNleaL~~G~--~NL~kHIeNi~~f-GvPvVVA--IN-rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~ 497 (636)
...-+..||+.|+ .++.+.|+.+|+. .+|+|+- .| -|...++.++ +.|.+.|+..+++.+.=- .
T Consensus 62 Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~f~----~~~~~aG~dGviv~Dl~~------e 131 (271)
T 1ujp_A 62 IQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERFF----GLFKQAGATGVILPDLPP------D 131 (271)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHHH----HHHHHHTCCEEECTTCCG------G
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHHHH----HHHHHcCCCEEEecCCCH------H
Confidence 3344566788886 4556778888874 8998883 35 3444444444 457778997555554422 2
Q ss_pred HHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----HhCCC--cee-----eCHHHHHHHHHHHhCCCCCCCeeE
Q 006673 498 DLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SYGAS--GVE-----YSEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 498 eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IYGA~--~V~-----~S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+ .+..++.+.+..-++-+|..++.+.+ .|+.|++ +|-.. +|+ +++...+.++++.+. .++|||+
T Consensus 132 e-~~~~~~~~~~~gl~~i~liap~s~~e-ri~~ia~~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~--~~~Pv~v 207 (271)
T 1ujp_A 132 E-DPGLVRLAQEIGLETVFLLAPTSTDA-RIATVVRHATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKAR--TALPVAV 207 (271)
T ss_dssp G-CHHHHHHHHHHTCEEECEECTTCCHH-HHHHHHTTCCSCEEEECC------------CCHHHHHHHHTT--CCSCEEE
T ss_pred H-HHHHHHHHHHcCCceEEEeCCCCCHH-HHHHHHHhCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhh--cCCCEEE
Confidence 2 23333444431123456666666654 6666665 33211 111 122224567777775 3789987
Q ss_pred e
Q 006673 566 A 566 (636)
Q Consensus 566 A 566 (636)
.
T Consensus 208 G 208 (271)
T 1ujp_A 208 G 208 (271)
T ss_dssp E
T ss_pred E
Confidence 4
No 98
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=77.18 E-value=3.9 Score=35.43 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+...+......++|++|++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 109 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLL-FLEAS--AKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp HHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 3444555555789999999997653322 235677888888885 44443 455788888887777665
No 99
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=77.04 E-value=2.1 Score=40.72 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
.+|+++++|+ |.|.||||..++++.-+ ..-|+++.+ =+|+...-+|
T Consensus 6 ~~g~i~v~~G----~mgsGKTT~ll~~a~r~-~~~g~kV~v--~k~~~d~r~~ 51 (191)
T 1xx6_A 6 DHGWVEVIVG----PMYSGKSEELIRRIRRA-KIAKQKIQV--FKPEIDNRYS 51 (191)
T ss_dssp TCCEEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEEE--EEEC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEE--EEeccCccch
Confidence 4599999998 67999999999998877 345777554 3577664443
No 100
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=77.03 E-value=3.3 Score=37.36 Aligned_cols=71 Identities=7% Similarity=-0.139 Sum_probs=45.6
Q ss_pred HhHHHHHHHHHhh------cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 436 CVNLARHIANTKA------YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 436 ~~NL~kHIeNi~~------fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+.++.+.++.+++ .++|+|++.|+-.-..+. ..+.+.+++++.|+. +..+... +-|+|-.+|-+.+++.+
T Consensus 107 ~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sa~-~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 107 FDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCL-FFEVSAC-LDFEHVQHVFHEAVREA 184 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECCSS-SCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCc-EEEEeec-CccccHHHHHHHHHHHH
Confidence 3344444444444 489999999997543221 124567788888885 5444431 56788888888888766
Q ss_pred h
Q 006673 508 E 508 (636)
Q Consensus 508 e 508 (636)
.
T Consensus 185 ~ 185 (187)
T 3c5c_A 185 R 185 (187)
T ss_dssp H
T ss_pred h
Confidence 4
No 101
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=76.83 E-value=1.8 Score=42.20 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=28.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
++++|+++|+ -|.||||++--|++.|. .+|...+
T Consensus 3 ~~~lIvl~G~----pGSGKSTla~~La~~L~-~~g~~~i 36 (260)
T 3a4m_A 3 DIMLIILTGL----PGVGKSTFSKNLAKILS-KNNIDVI 36 (260)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCEEEEEEcC----CCCCHHHHHHHHHHHHH-hCCCEEE
Confidence 3679999997 69999999999999984 6777655
No 102
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=76.53 E-value=6.5 Score=33.77 Aligned_cols=70 Identities=11% Similarity=-0.016 Sum_probs=45.8
Q ss_pred HhHHHHHHHHHhh----cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKA----YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAINrF~tD--T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++...++.+.+ .++|+|++.|+-.-. .+-..+..++++.+.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 88 FEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCK-FIETS--AALHHNVQALFEGVVRQIR 163 (166)
T ss_dssp HHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCE-EEECB--GGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCc-EEEec--cCCCCCHHHHHHHHHHHHH
Confidence 3445555555544 489999999997643 222334456778888875 44333 5668999999888887764
No 103
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=76.53 E-value=2.6 Score=39.47 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=30.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+.|.+++ |.|.||||+.-.|.+.| ...|.+....-+.|
T Consensus 7 ~~i~i~G----~sGsGKTTl~~~l~~~l-~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAA----WSGTGKTTLLKKLIPAL-CARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECC
T ss_pred eEEEEEe----CCCCCHHHHHHHHHHhc-cccCCceeEEeeCC
Confidence 4677777 67999999999999999 46788776666655
No 104
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=76.29 E-value=1.6 Score=39.16 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.+++|+++++ .|.||||++--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGH----PATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHc
Confidence 35789999996 6999999998888777
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=76.28 E-value=2.4 Score=39.62 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=29.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCcc
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTF 118 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~F 118 (636)
|+++++|+ |.|.||||+.++++.-+ ..-|+++.+ =+|+...-+
T Consensus 3 g~i~vi~G----~~gsGKTT~ll~~~~~~-~~~g~~v~~--~~~~~d~r~ 45 (184)
T 2orw_A 3 GKLTVITG----PMYSGKTTELLSFVEIY-KLGKKKVAV--FKPKIDSRY 45 (184)
T ss_dssp CCEEEEEE----STTSSHHHHHHHHHHHH-HHTTCEEEE--EEEC-----
T ss_pred cEEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEEE--Eeecccccc
Confidence 78999998 57999999999998777 345776543 356665433
No 106
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=76.24 E-value=6.8 Score=33.46 Aligned_cols=56 Identities=11% Similarity=-0.009 Sum_probs=37.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++|+++++|+..-..+.+ .+.+.+++++. +.. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 107 EDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCA-FLESS--AKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCE-EEECB--TTTTBSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccccCCHHHHHHHHHHccCCc-EEEec--CCCCCCHHHHHHHHHHHH
Confidence 5899999999976533222 34566777776 554 44333 566888888888877665
No 107
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=76.21 E-value=6.2 Score=37.98 Aligned_cols=82 Identities=7% Similarity=0.028 Sum_probs=56.2
Q ss_pred HHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCCCCHHH-------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 006673 430 ALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 430 eaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~tDT~aE-------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~ 501 (636)
+.-++.+..+++.|+..+.+|.+.||.. ...+.++++. ++.+.+.|++.|+. +++-+++ ...+-+.
T Consensus 95 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~-----~~~~~~~ 168 (290)
T 3tva_A 95 ETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQA-VHLETGQ-----ESADHLL 168 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCE-EEEECCS-----SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCE-EEEecCC-----CCHHHHH
Confidence 3456678899999999999999999974 3344444433 34455566778996 8888875 2345566
Q ss_pred HHHHHhhcCCCCCcccCC
Q 006673 502 AVQRACENVTQPLKFLYP 519 (636)
Q Consensus 502 aVv~a~e~~~s~fk~LY~ 519 (636)
++++.+. +.++.++||
T Consensus 169 ~l~~~~~--~~~~g~~~D 184 (290)
T 3tva_A 169 EFIEDVN--RPNLGINFD 184 (290)
T ss_dssp HHHHHHC--CTTEEEEEC
T ss_pred HHHHhcC--CCCEEEEec
Confidence 6777664 245777776
No 108
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=75.99 E-value=2.1 Score=42.89 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+..+|.||| |.|.||||++--|.+.|+
T Consensus 4 ~~~iIgItG----~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTG----SSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEES----CC---CCTHHHHHHHHHH
T ss_pred CceEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 356899998 789999999999999885
No 109
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=75.82 E-value=3.6 Score=35.21 Aligned_cols=69 Identities=9% Similarity=0.066 Sum_probs=45.1
Q ss_pred HhHHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 436 CVNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 436 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+.++.+.++.+.+ -++|+|++.|+-.-..+ .+.+.+++++.+.++. +..+. ++=|+|-.+|-+.+++.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 94 FARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLL-FMETS--AKTSMNVNEIFMAIAKKL 167 (170)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 3445555555554 48999999999764322 2235567788888875 44333 456788888888877655
No 110
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=75.75 E-value=5 Score=34.08 Aligned_cols=58 Identities=19% Similarity=0.055 Sum_probs=39.8
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..++|+++++|+..-..+.+ .+..++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 106 YEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCP-FMETS--AKSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSC-EEEEC--TTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCC-EEEec--CCCCcCHHHHHHHHHHHHh
Confidence 36899999999976422222 34456778888886 44433 4567888888888877664
No 111
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=75.70 E-value=5.4 Score=33.90 Aligned_cols=57 Identities=14% Similarity=0.035 Sum_probs=39.6
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|++|++|+..-..+ ...+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 108 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 108 ENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVN-YVETS--AKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp TTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 58999999999764322 2245567788888875 44443 4557888888888877663
No 112
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=75.59 E-value=6.3 Score=34.53 Aligned_cols=69 Identities=10% Similarity=0.086 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhh-cCCcEEEEecCCCCC-CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 437 VNLARHIANTKA-YGANVVVAVNMFATD-SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 437 ~NL~kHIeNi~~-fGvPvVVAINrF~tD-T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++...++.+++ .+.|+|+++|+-..+ .+...+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 133 ~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 133 DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL-FIQTS--AKTGTNIKNIFYMLAEEIY 203 (208)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHHHHcCCc-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 345555555554 569999999998721 122346678888888885 44433 4567888888888877664
No 113
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=75.51 E-value=7.9 Score=33.68 Aligned_cols=60 Identities=12% Similarity=-0.006 Sum_probs=42.3
Q ss_pred hhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 447 KAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
...++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+.+.+.+
T Consensus 113 ~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 113 AQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLP-FMETS--AKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp SCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 33789999999997754322 234456778888886 55444 45678888998888887754
No 114
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=75.36 E-value=3.7 Score=36.65 Aligned_cols=60 Identities=7% Similarity=-0.058 Sum_probs=37.1
Q ss_pred hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 448 AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
..++|+||++|+..-..+. ..+.+++++++.|+.-+.+|-.-..|.+|-.++-+.+++.+
T Consensus 125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 125 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred CCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 4689999999997653322 23456778888888733334333345577777766665443
No 115
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=75.20 E-value=4.5 Score=35.29 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=40.4
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|++|++|+..-..+ ...+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 122 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECccccccCccCHHHHHHHHHHcCCe-EEEeC--CCCCCCHHHHHHHHHHHHH
Confidence 58999999999764322 2345667888888885 44433 4557888888888887764
No 116
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=75.08 E-value=5.3 Score=34.98 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=44.2
Q ss_pred HHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~----fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++...++.++. .++|+||++|+..-..+. ..+.+++++.+.|+. +..+. ++=|+|-.+|-+.+.+.+.
T Consensus 111 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 111 NVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIP-YFETS--AANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp THHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCC-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 34444444443 689999999997653321 235567788888886 44443 4557888887777776654
No 117
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=74.31 E-value=8.9 Score=39.77 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhcCC-cEEEEecCCCCCCHHHHHHHHHHH----HHc---CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKAYGA-NVVVAVNMFATDSKAELNAVRNAA----MAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~fGv-PvVVAINrF~tDT~aEI~~v~e~c----~~~---Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+...|+..++.+|+ |+||++|+-.-.++++++...+.. ++. +++ ++... +.=|+|-.+|-+.+.+.+.
T Consensus 116 qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-ii~vS--A~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 116 QTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVP-IIPVS--ALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECB--TTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCE-EEEEE--CCCCcChHHHHHHHHHhCC
Confidence 56778888888887 899999998876666654443333 222 444 44444 4457888899888887664
No 118
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=74.20 E-value=2.2 Score=46.67 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=26.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+.|++++- -|+|||||+.-|+..|. +.|+++.+.
T Consensus 101 ~~vI~ivG~----~GvGKTTl~~kLA~~l~-~~G~kVllV 135 (504)
T 2j37_W 101 QNVIMFVGL----QGSGKTTTCSKLAYYYQ-RKGWKTCLI 135 (504)
T ss_dssp -EEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHH-hCCCeEEEE
Confidence 557777764 29999999999999994 668876544
No 119
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.19 E-value=1.9 Score=38.39 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=22.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
|++|+++++ .|.||||++--|++.|+
T Consensus 3 ~~~I~i~G~----~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGV----PGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECC----TTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECC----CCCCHHHHHHHHHHHHH
Confidence 678999996 69999999999998885
No 120
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=73.64 E-value=7.4 Score=34.47 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=40.4
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++|++|++|+..-.. +...+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 125 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 125 DDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIP-FIETS--AKTRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp SCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 5899999999987432 11234456778888886 44443 45578888888888887753
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=73.58 E-value=2.3 Score=38.75 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
.|++|.+++ |.|.||||+.--|..-+........-..-|+|..|
T Consensus 4 ~g~~i~i~G----psGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 4 MRKTLVLLG----AHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 588888887 67999999988886655211222333445666654
No 122
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=73.51 E-value=1.2 Score=40.78 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=28.9
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
++|.|+| |-|.||||.+--|.+.|. ..|.+ +..+|+|.
T Consensus 1 ~~I~i~G----~~GsGKsTl~~~L~~~l~-~~g~~-v~~~~~~~ 38 (214)
T 1gtv_A 1 MLIAIEG----VDGAGKRTLVEKLSGAFR-AAGRS-VATLAFPR 38 (214)
T ss_dssp CEEEEEE----EEEEEHHHHHHHHHHHHH-EEEEE-EEEEESSE
T ss_pred CEEEEEc----CCCCCHHHHHHHHHHHHH-hcCCe-EEEEeecC
Confidence 4677888 469999999999999994 44554 45678764
No 123
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=73.42 E-value=14 Score=34.87 Aligned_cols=91 Identities=10% Similarity=0.059 Sum_probs=57.1
Q ss_pred cCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCC---CCHHH-------HHHHHHHHHHcCCCeEEEcCccccC-ccc
Q 006673 427 ENVALVEAGCVNLARHIANTKAYGANVVVAVNMFAT---DSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHG-GKG 495 (636)
Q Consensus 427 eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t---DT~aE-------I~~v~e~c~~~Gv~~~avs~~wa~G-GeG 495 (636)
++.+.-++....+++.|+..+.+|.+.||..--+.. +.++. ++.+.+.+++.|+. +++-+++..+ --.
T Consensus 74 ~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~~~ 152 (278)
T 1i60_A 74 RDEKGHNEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVK-IALEFVGHPQCTVN 152 (278)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCTTBSSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCE-EEEEecCCccchhc
Confidence 344566788899999999999999999988432221 22333 33444555677996 8887776542 112
Q ss_pred hhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 496 AVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 496 a~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
..+-+..+++.+. +.++.++||.
T Consensus 153 ~~~~~~~l~~~~~--~~~~g~~~D~ 175 (278)
T 1i60_A 153 TFEQAYEIVNTVN--RDNVGLVLDS 175 (278)
T ss_dssp SHHHHHHHHHHHC--CTTEEEEEEH
T ss_pred CHHHHHHHHHHhC--CCCeeEEEEe
Confidence 3344555666654 2457777763
No 124
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=73.42 E-value=6.6 Score=34.42 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=40.6
Q ss_pred hhcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 447 KAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
...++|+||++|+..-..+ ...+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 108 ~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 108 GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAA-FLESS--AKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp ----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEECC--TTSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCc-EEEEe--cCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999764222 2235567788888885 44433 56689999999998888764
No 125
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=73.38 E-value=13 Score=33.00 Aligned_cols=69 Identities=19% Similarity=0.153 Sum_probs=43.0
Q ss_pred hHHH-HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHH
Q 006673 437 VNLA-RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL 499 (636)
Q Consensus 437 ~NL~-kHIeNi~~f--GvPvVVAINrF~tDT~aE--------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eL 499 (636)
.++. +.++.++++ ++|+|+++|+-.-..+.+ .+...+++++.|...+..+. ++=|+|-.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l 183 (194)
T 2atx_A 106 QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS--ALTQKGLKTV 183 (194)
T ss_dssp HHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC--TTTCTTHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee--CCCCCCHHHH
Confidence 3443 345555555 899999999976543221 24556777777762244333 4457888887
Q ss_pred HHHHHHHh
Q 006673 500 GIAVQRAC 507 (636)
Q Consensus 500 A~aVv~a~ 507 (636)
-+.+++.+
T Consensus 184 ~~~l~~~i 191 (194)
T 2atx_A 184 FDEAIIAI 191 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777654
No 126
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=73.30 E-value=2.6 Score=45.92 Aligned_cols=49 Identities=16% Similarity=0.035 Sum_probs=29.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEee--CCCCCCcccc
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLR--QPSQGPTFGI 120 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lR--ePSlGP~FGi 120 (636)
.++.|.|++ .+-|+||||++..|+.+| ++.|+++.+.=- ++|+.-.||.
T Consensus 325 ~~~~~~~~~---~~~g~Gktt~a~~lA~~l-~~~g~~vllvD~Dp~~~l~~~l~~ 375 (589)
T 1ihu_A 325 NEHGLIMLM---GKGGVGKTTMAAAIAVRL-ADMGFDVHLTTSDPAAHLSMTLNG 375 (589)
T ss_dssp TSCEEEEEE---CSTTSSHHHHHHHHHHHH-HHTTCCEEEEESCCC---------
T ss_pred cCCeEEEEe---cCCCCChhhHHHHHHHHH-HHCCCcEEEEeCCCcccHhHHhcc
Confidence 355555554 466999999999999999 588999877422 3566666765
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.30 E-value=1.9 Score=38.74 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.++.|++++. .|.||||++.-|++.|
T Consensus 4 ~~~~i~l~G~----~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGL----MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678899885 7999999999888877
No 128
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=73.27 E-value=8.7 Score=38.08 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=77.9
Q ss_pred CCCCCccCCCCCccc------ccccCHHHHHHHH--hHHHHHHHHHhhc--CCcEEEE--ecC-CCCCCHHHHHHHHHHH
Q 006673 409 GGGPQVVAGKPLDHA------YLNENVALVEAGC--VNLARHIANTKAY--GANVVVA--VNM-FATDSKAELNAVRNAA 475 (636)
Q Consensus 409 GG~~~~~~g~pL~~~------l~~eNleaL~~G~--~NL~kHIeNi~~f--GvPvVVA--INr-F~tDT~aEI~~v~e~c 475 (636)
+|+.-..+|-|.-+- ...-+..||+.|+ ......|+.+|+. .+|+++- .|. |.+.++.++ +.|
T Consensus 43 ~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~----~~~ 118 (268)
T 1qop_A 43 AGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFY----ARC 118 (268)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHH----HHH
T ss_pred CCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHH----HHH
Confidence 455555555554321 2222345677776 3444677778775 7898774 363 555655555 456
Q ss_pred HHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-Hh---------CCCce--eeC
Q 006673 476 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-SY---------GASGV--EYS 543 (636)
Q Consensus 476 ~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-IY---------GA~~V--~~S 543 (636)
.++|+..+.+.+.=- .+ .+.+++.+.+..-..-++...+.+. +.++.|+. .- |-.|. .+.
T Consensus 119 ~~aGadgii~~d~~~------e~-~~~~~~~~~~~g~~~i~l~~p~t~~-~~i~~i~~~~~g~v~~~s~~G~tG~~~~~~ 190 (268)
T 1qop_A 119 EQVGVDSVLVADVPV------EE-SAPFRQAALRHNIAPIFICPPNADD-DLLRQVASYGRGYTYLLSRSGVTGAENRGA 190 (268)
T ss_dssp HHHTCCEEEETTCCG------GG-CHHHHHHHHHTTCEEECEECTTCCH-HHHHHHHHHCCSCEEEESSSSCCCSSSCC-
T ss_pred HHcCCCEEEEcCCCH------HH-HHHHHHHHHHcCCcEEEEECCCCCH-HHHHHHHhhCCCcEEEEecCCcCCCccCCC
Confidence 678996455442211 22 3445555543211223444555554 46666665 22 12222 455
Q ss_pred HHHHHHHHHHHhCCCCCCCeeE
Q 006673 544 EEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 544 ~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+...+.++++.+.- ++|||+
T Consensus 191 ~~~~~~i~~lr~~~--~~pi~v 210 (268)
T 1qop_A 191 LPLHHLIEKLKEYH--AAPALQ 210 (268)
T ss_dssp -CCHHHHHHHHHTT--CCCEEE
T ss_pred chHHHHHHHHHhcc--CCcEEE
Confidence 66678888888864 789987
No 129
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=73.24 E-value=17 Score=34.54 Aligned_cols=95 Identities=11% Similarity=0.054 Sum_probs=61.5
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCC--CCHHHHH----HHHHHHHH-cCCCeEEEcCccccCcc-
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKAELN----AVRNAAMA-AGAFDAVVCSHHAHGGK- 494 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t--DT~aEI~----~v~e~c~~-~Gv~~~avs~~wa~GGe- 494 (636)
+..+|.+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++ .+++.+++ .|+. +++-+++..+..
T Consensus 76 l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~-l~lEn~~~~~~~~ 154 (285)
T 1qtw_A 76 LGHPVTEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVT-AVIENTAGQGSNL 154 (285)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCE-EEEECCCCCTTBC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCE-EEEecCCCCCCcc
Confidence 4456778888999999999999999999999763 32322 3344443 44555443 6886 888888654432
Q ss_pred -chhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 495 -GAVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 495 -Ga~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
...+-+.++++.+.. +.++.+++|.
T Consensus 155 ~~~~~~~~~l~~~v~~-~~~~g~~~D~ 180 (285)
T 1qtw_A 155 GFKFEHLAAIIDGVED-KSRVGVCIDT 180 (285)
T ss_dssp CSSHHHHHHHHHHCSC-GGGEEEEEEH
T ss_pred cCCHHHHHHHHHhhcC-ccceEEEEEh
Confidence 133445566666621 2358888873
No 130
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=73.23 E-value=2.3 Score=40.27 Aligned_cols=43 Identities=21% Similarity=0.142 Sum_probs=31.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+|+-..++.++. +.|.||||++.-|+.+| . .|+++.+.=-.|.
T Consensus 10 ~~~~~~i~~~~G-kgGvGKTTl~~~La~~l-~-~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 10 HGMASMIVVFVG-TAGSGKTTLTGEFGRYL-E-DNYKVAYVNLDTG 52 (262)
T ss_dssp TTCCCEEEEEEC-STTSSHHHHHHHHHHHH-T-TTSCEEEEECCSS
T ss_pred CCcceEEEEEeC-CCCCCHHHHHHHHHHHH-H-CCCeEEEEeCCCC
Confidence 355444444443 67999999999999999 5 7888766655553
No 131
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=73.23 E-value=3.7 Score=36.93 Aligned_cols=68 Identities=19% Similarity=0.187 Sum_probs=45.7
Q ss_pred HHHHHHHHHhh---cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKA---YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.+.++.+++ .++|+++++|+-.-.. +...+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 113 ~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAI-VVETS--AKNAINIEELFQGISRQIP 185 (192)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCE-EEECB--TTTTBSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHHH
Confidence 44445555554 4899999999976432 11245567888888875 44433 4568898899888887764
No 132
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=73.08 E-value=9.1 Score=33.18 Aligned_cols=58 Identities=9% Similarity=-0.087 Sum_probs=38.9
Q ss_pred hcCCcEEEEecCCCCC-CHHHHHHHHHHHH-HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 448 AYGANVVVAVNMFATD-SKAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 448 ~fGvPvVVAINrF~tD-T~aEI~~v~e~c~-~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..++|+++++|+..-. .+...+.++++++ ..++. +..+. ++=|+|-.+|-+.+++.+-
T Consensus 114 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 114 PESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYP-YFETS--AKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCcccccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3789999999997642 2222345567777 44555 55444 4558888888888887764
No 133
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=72.90 E-value=7.8 Score=34.61 Aligned_cols=57 Identities=14% Similarity=0.041 Sum_probs=40.0
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+||++|+..-..+ ...+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 118 ENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVN-YVETS--AKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp SCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeccCccccccccHHHHHHHHHHhCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 58999999999875432 2245677888888885 44333 4557888888877777664
No 134
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=72.88 E-value=1.8 Score=38.33 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++|++|+ +.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVG----ARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEES----CTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEC----CCCCCHHHHHHHHHHHhC
Confidence 5788998 579999999998888773
No 135
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=72.64 E-value=3.5 Score=40.62 Aligned_cols=46 Identities=17% Similarity=0.377 Sum_probs=32.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
.+|++.++|+ |.|.||||..++++.-. .--|+++.+. +|+.+.-+|
T Consensus 26 ~~G~l~vitG----~MgsGKTT~lL~~a~r~-~~~g~kVli~--k~~~d~R~g 71 (214)
T 2j9r_A 26 QNGWIEVICG----SMFSGKSEELIRRVRRT-QFAKQHAIVF--KPCIDNRYS 71 (214)
T ss_dssp CSCEEEEEEC----STTSCHHHHHHHHHHHH-HHTTCCEEEE--ECC------
T ss_pred CCCEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCEEEEE--EeccCCcch
Confidence 5699999998 67999999999998877 3557776543 588775554
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.61 E-value=1.8 Score=38.60 Aligned_cols=27 Identities=26% Similarity=0.349 Sum_probs=18.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++++|+++++ -|.||||++--|++.|+
T Consensus 4 ~~~~I~l~G~----~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGP----FGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECC----C----CHHHHHHHHHST
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 4789999997 69999999988877663
No 137
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=72.32 E-value=5.6 Score=35.61 Aligned_cols=69 Identities=12% Similarity=0.060 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++.+.++.+++ .++|+||++|+..-..+.+ .+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 110 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 110 NHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLI-FMETS--AKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344444555544 4899999999986533211 34556788888885 44443 3557888887777766553
No 138
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=72.32 E-value=6.8 Score=35.31 Aligned_cols=68 Identities=10% Similarity=0.095 Sum_probs=42.4
Q ss_pred HHHHHHHHHhh---cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKA---YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~---fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.+.++.+++ .++|++|++|+-.-+. +...+.+.+++++.|+. +..+. ++=|+|-.+|-+.+.+.+.
T Consensus 110 ~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 110 NIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIP-FIESS--AKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp THHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 34444444444 4899999999976521 11223456677778886 44444 4557888887777666553
No 139
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=71.84 E-value=15 Score=31.76 Aligned_cols=58 Identities=10% Similarity=-0.000 Sum_probs=37.9
Q ss_pred hcCCcEEEEecCCCCCCHH---HHHHHHHHHHH-cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 448 AYGANVVVAVNMFATDSKA---ELNAVRNAAMA-AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~a---EI~~v~e~c~~-~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..++|++|++|+..-..++ ..+.+++++++ .+.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 116 ~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 116 PETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIP-LFLTS--AKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp TTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCC-EEEEB--TTTTBSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCe-EEEEe--cCCCCCHHHHHHHHHHHHH
Confidence 3789999999997652211 23445666763 4555 44333 5668888888888877653
No 140
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=71.81 E-value=6.6 Score=34.01 Aligned_cols=60 Identities=13% Similarity=-0.043 Sum_probs=41.3
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
...++|++|++|+..-..+.+ .+..++++.+.++. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 111 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 111 DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVA-YFEAS--AKLRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHHHHH
Confidence 346899999999976433222 24456778888875 44433 45688988888888877753
No 141
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=71.79 E-value=3 Score=46.02 Aligned_cols=36 Identities=36% Similarity=0.403 Sum_probs=30.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+++++||| |.|.|||||...|...+ ...|++..++
T Consensus 203 ~~~~~~I~G----~pGTGKTt~i~~l~~~l-~~~g~~Vl~~ 238 (574)
T 3e1s_A 203 GHRLVVLTG----GPGTGKSTTTKAVADLA-ESLGLEVGLC 238 (574)
T ss_dssp TCSEEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred hCCEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEe
Confidence 367999999 79999999999999999 4677776654
No 142
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=71.48 E-value=11 Score=33.13 Aligned_cols=71 Identities=11% Similarity=0.016 Sum_probs=47.8
Q ss_pred HhHHHHHHHHHhh----cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 436 CVNLARHIANTKA----YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+.++.+.++.+.+ .++|+++++|+-.-.. +...+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 103 ~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 103 FVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSML-FIEAS--AKTCDGVQCAFEELVEKIIQ 178 (195)
T ss_dssp HHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCE-EEEec--CCCCCCHHHHHHHHHHHHHh
Confidence 3455556666665 4799999999976532 11234566788888885 54444 34588988888888887754
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=71.37 E-value=7.8 Score=41.01 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCCCC----HHHHH----HHHHHHHHcCCC-----eEEEcCccccCccchhHHH
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFATDS----KAELN----AVRNAAMAAGAF-----DAVVCSHHAHGGKGAVDLG 500 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~tDT----~aEI~----~v~e~c~~~Gv~-----~~avs~~wa~GGeGa~eLA 500 (636)
....|+..++..|+| +||++|+-.-.+ ++..+ .+.+++++.|.. .++... +.=|+|-.+|-
T Consensus 142 qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iS--A~~G~ni~~l~ 216 (439)
T 3j2k_7 142 QTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCS--GLTGANLKEQS 216 (439)
T ss_pred hHHHHHHHHHHcCCCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEee--ccCCccccccc
Confidence 567788999999999 999999976422 22333 344455566642 133333 34466666543
No 144
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=71.25 E-value=5.2 Score=34.61 Aligned_cols=57 Identities=16% Similarity=0.057 Sum_probs=38.9
Q ss_pred hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 448 AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
..++|++|++|+..-..+.+ .+..++++++.++. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 117 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVM-FIETS--AKAGYNVKQLFRRVAAAL 175 (179)
T ss_dssp TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEEEB--TTTTBSHHHHHHHHHHTC
T ss_pred CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 46899999999976433222 34556777778875 44333 556788888888877665
No 145
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.22 E-value=3.6 Score=36.59 Aligned_cols=30 Identities=30% Similarity=0.253 Sum_probs=24.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
++|+++|+ -|.||||.+--|++.|+ ..|..
T Consensus 2 ~~I~i~G~----~GsGKsT~~~~L~~~l~-~~g~~ 31 (194)
T 1nks_A 2 KIGIVTGI----PGVGKSTVLAKVKEILD-NQGIN 31 (194)
T ss_dssp EEEEEEEC----TTSCHHHHHHHHHHHHH-TTTCC
T ss_pred eEEEEECC----CCCCHHHHHHHHHHHHH-hcCce
Confidence 47888885 69999999999999995 34544
No 146
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=71.21 E-value=8.3 Score=34.82 Aligned_cols=63 Identities=16% Similarity=0.048 Sum_probs=42.3
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 443 IANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+......++|++|++|+-.-..+. ..+.+++++.+.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 106 i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 106 IDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMP-FLETS--ALDSTNVEDAFLTMARQIK 170 (206)
T ss_dssp HHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 333334579999999997654322 234567788888886 44433 5667888888888777664
No 147
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=71.11 E-value=7.7 Score=33.39 Aligned_cols=70 Identities=14% Similarity=0.041 Sum_probs=46.3
Q ss_pred HhHHHHHHHHHhh----cCCcEEEEecCCCCC--CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKA----YGANVVVAVNMFATD--SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAINrF~tD--T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++...++.+.+ .++|+|+++|+-.-. .+...+...+++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 91 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIETS--AALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCc-EEEec--CccCCCHHHHHHHHHHHHH
Confidence 3444455555544 389999999997643 222334566788888885 44333 5668999888888887764
No 148
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=71.10 E-value=6.9 Score=33.46 Aligned_cols=67 Identities=6% Similarity=-0.107 Sum_probs=43.0
Q ss_pred HHHHHHHHHhh--cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 438 NLARHIANTKA--YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 438 NL~kHIeNi~~--fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
++...++.++. .++|+++++|+..-..+. ..+.+++++++.|+. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 95 ~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 95 AISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLR-FYRTS--VKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp THHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCe-EEEEe--cCCCCCHHHHHHHHHHHH
Confidence 34444444444 489999999997643211 234556778888885 44433 455788888888877665
No 149
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=71.08 E-value=2.3 Score=37.18 Aligned_cols=23 Identities=30% Similarity=0.353 Sum_probs=19.5
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+|+++| |-|.||||++--|++.|
T Consensus 3 ~i~l~G----~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEG----PDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEEC----SSSSSHHHHHHHHHHHH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHh
Confidence 688888 57999999998888777
No 150
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=71.04 E-value=4.6 Score=37.44 Aligned_cols=70 Identities=9% Similarity=-0.080 Sum_probs=43.9
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++.+.++.++. .++|+||++|+..-..+. ..+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 102 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 102 ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLL-FTETS--ALNSENVDKAFEELINTIYQ 176 (223)
T ss_dssp HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--CC-CCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 344444444444 489999999997643221 124556788888875 44443 45678888888888887753
No 151
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=70.94 E-value=2.2 Score=40.26 Aligned_cols=45 Identities=27% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHH-HHHhhhcCCcEEEEeeCCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLC-QALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~-~aL~~~lg~~~~~~lRePSlGP 116 (636)
+.|++|.++| |-|.||||+.--|. .-+ ..+....-..-|.|.-|-
T Consensus 25 ~~G~ii~l~G----p~GsGKSTl~~~L~~~~~-~~~~~~~~~~~~~~~~g~ 70 (231)
T 3lnc_A 25 SVGVILVLSS----PSGCGKTTVANKLLEKQK-NNIVKSVSVTTRAARKGE 70 (231)
T ss_dssp ECCCEEEEEC----SCC----CHHHHHHC-----CEEECCCEESSCCCTTC
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHhcCC-CCcccccccCCCCCCccc
Confidence 4589999988 56999999998887 544 222222334456666553
No 152
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=70.84 E-value=2.1 Score=38.39 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=22.2
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.|+.|++++. -|.||||++--|++.|
T Consensus 3 ~g~~I~l~G~----~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGP----PGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 4778999985 6999999998888776
No 153
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=70.77 E-value=11 Score=33.07 Aligned_cols=64 Identities=13% Similarity=0.165 Sum_probs=41.8
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aE----I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.++.+++|++|++|+..--+++| .+.+++++...+...+..+ =++-|+|-.+|-+.+.+.+.
T Consensus 126 ~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~--Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 126 VEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPT--SSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp HHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEEC--CTTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEE--ecCCCCCHHHHHHHHHHHhh
Confidence 3445566999999999976543333 3455666665443224433 35678899999888888764
No 154
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=70.68 E-value=2.6 Score=39.27 Aligned_cols=45 Identities=33% Similarity=0.407 Sum_probs=29.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
.|+.|.+.| |.|.||||+.--|..-+....|.......|.|..|-
T Consensus 3 ~g~~i~lvG----psGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~ 47 (198)
T 1lvg_A 3 GPRPVVLSG----PSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE 47 (198)
T ss_dssp --CCEEEEC----CTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc
Confidence 477777777 669999999887765442234555445567777663
No 155
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=70.56 E-value=3.9 Score=39.81 Aligned_cols=36 Identities=28% Similarity=0.352 Sum_probs=28.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.+|.+++.|+ -|-||||.++||+.-. ...|+++.+.
T Consensus 27 ~~g~i~v~tG-----~GkGKTTaA~GlalRA-~g~G~rV~~v 62 (196)
T 1g5t_A 27 ERGIIIVFTG-----NGKGKTTAAFGTAARA-VGHGKNVGVV 62 (196)
T ss_dssp CCCCEEEEES-----SSSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred cCceEEEECC-----CCCCHHHHHHHHHHHH-HHCCCeEEEE
Confidence 5688888864 6999999999999877 3569987654
No 156
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=70.52 E-value=2.7 Score=38.75 Aligned_cols=33 Identities=36% Similarity=0.326 Sum_probs=27.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
+.|.+|.+++ |.|.||||++--|++.|. .-|..
T Consensus 23 ~~g~~i~l~G----~sGsGKSTl~~~La~~l~-~~G~~ 55 (200)
T 3uie_A 23 QKGCVIWVTG----LSGSGKSTLACALNQMLY-QKGKL 55 (200)
T ss_dssp SCCEEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHH-hcCce
Confidence 5699999998 479999999999999984 44544
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.51 E-value=2.6 Score=38.61 Aligned_cols=43 Identities=30% Similarity=0.390 Sum_probs=32.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
++|.+++ |.|.||||+.--|..-+....|.....+-|.|.-|-
T Consensus 2 ~ii~l~G----psGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge 44 (186)
T 3a00_A 2 RPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp CCEEEES----SSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTC
T ss_pred CEEEEEC----CCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCc
Confidence 4555555 679999999988877664356777778888887764
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.47 E-value=3.4 Score=37.17 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=27.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
++|++|.+|+. -|.||||++--|++.|. ..|...+
T Consensus 3 ~~g~~i~l~G~----~GsGKST~~~~L~~~l~-~~g~~~i 37 (179)
T 2pez_A 3 MRGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCY 37 (179)
T ss_dssp -CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHHh-hCCCcEE
Confidence 45899999986 69999999999988883 3465544
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=70.45 E-value=2.7 Score=38.80 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|+.|++++. .|.||||++.-|++.|
T Consensus 23 ~~~~~i~l~G~----~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGY----MGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcC----CCCCHHHHHHHHHHHc
Confidence 45889999985 6999999999888777
No 160
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.73 E-value=3.3 Score=43.10 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=31.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.|.+|+|++ |-|.|||||.-.|..-++ .-....++.+.+|.
T Consensus 122 ~~g~i~I~G----ptGSGKTTlL~~l~g~~~-~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 122 PRGLVLVTG----PTGSGKSTTLAAMLDYLN-NTKYHHILTIEDPI 162 (356)
T ss_dssp SSEEEEEEC----STTSCHHHHHHHHHHHHH-HHCCCEEEEEESSC
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHhccc-CCCCcEEEEccCcH
Confidence 455999998 569999999999988884 54345677888874
No 161
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=69.61 E-value=9.4 Score=34.77 Aligned_cols=70 Identities=16% Similarity=0.072 Sum_probs=47.1
Q ss_pred HhHHHHHHHHHhh----cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKA----YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++...++.++. .++|+||++|+..-..+.+ .+.++++|++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 123 ~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 123 FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIP-YFETS--AATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCC-EEEEB--TTTTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCc-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 4456666666665 5799999999976533222 35677888888986 44333 4557888887777776653
No 162
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=69.50 E-value=19 Score=36.54 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=45.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 450 GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 450 GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+.|+|+++|+-.-....+++.+.+++.+.+.. +..+. ++=|+|-.+|-+.+.+.+..
T Consensus 280 ~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~-~~~iS--A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 280 DLPFLVVINKIDVADEENIKRLEKFVKEKGLN-PIKIS--ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TSCEEEEECCTTTCCHHHHHHHHHHHHHTTCC-CEECB--TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcccCChHHHHHHHHHHHhcCCC-eEEEe--CCCCcCHHHHHHHHHHHHHH
Confidence 89999999999888888888888888888876 33333 45689999999998888753
No 163
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.42 E-value=3.5 Score=39.73 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=32.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
.|++|.++| |.|.||||+..-|.+-+...+....-.+-|+|.-|-
T Consensus 18 ~g~~ivl~G----PSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 18 GRKTLVLIG----ASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp SCCEEEEEC----CTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCCEEEEEC----cCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 589999887 779999999988876652234444556678887763
No 164
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=69.11 E-value=19 Score=32.77 Aligned_cols=67 Identities=13% Similarity=-0.024 Sum_probs=44.0
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHHHHH----HHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 442 HIANTKAYGANVVVAVNMFATDSKAELN----AVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tDT~aEI~----~v~e~c~~~-----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++.+++.++|+||++|+-.-.++.+++ .+++.+.+. +.. +-+-.+=++-|+|-.+|-+.+.+.+..
T Consensus 136 ~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 136 MIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGK-LTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp HHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSC-EEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCC-CeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 3455667999999999998776666643 334444432 111 222233467799999999999888854
No 165
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=68.60 E-value=8.2 Score=34.67 Aligned_cols=69 Identities=13% Similarity=-0.029 Sum_probs=44.5
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++...++.++. .++|+|+++|+..-..+ ...+.+++++++.|+. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 97 ~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 97 NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFE-FFEAS--AKDNINVKQTFERLVDVIC 170 (203)
T ss_dssp HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 344445555554 58999999999765332 1235567778888885 44443 4557888777777776653
No 166
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=68.49 E-value=7.8 Score=33.26 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=39.2
Q ss_pred hcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 448 AYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
..++|+++++|+..-..+ ...+.+++++++.|+. +..+. ++=|+|-.+|-+.+++.+
T Consensus 109 ~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 109 GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAK-HYHTS--AKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEB--TTTTBSHHHHHHHHHHHH
T ss_pred CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCe-EEEec--CCCCCCHHHHHHHHHHHH
Confidence 368999999999764322 1245567788888875 43332 455788888888877765
No 167
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=68.44 E-value=10 Score=40.49 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=29.8
Q ss_pred HHHHHHHHhhcCCc-EEEEecCCCCCC----HHHHH----HHHHHHHHc-CCC
Q 006673 439 LARHIANTKAYGAN-VVVAVNMFATDS----KAELN----AVRNAAMAA-GAF 481 (636)
Q Consensus 439 L~kHIeNi~~fGvP-vVVAINrF~tDT----~aEI~----~v~e~c~~~-Gv~ 481 (636)
...|+..++..|+| +||++|+-.-.+ ++.++ .+++++++. |..
T Consensus 169 t~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~ 221 (467)
T 1r5b_A 169 TREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN 221 (467)
T ss_dssp HHHHHHHHHHTTCSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCCCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCC
Confidence 56788888889998 999999987532 33333 356666666 653
No 168
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=68.38 E-value=3.2 Score=37.33 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++++|++++. -|.||||++--|++.|
T Consensus 8 ~~~~I~l~G~----~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGG----PGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 4789999995 6999999998888777
No 169
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=68.29 E-value=15 Score=31.99 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=40.0
Q ss_pred hcCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 448 AYGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..++|+||++|+..-.. +...+.+.+++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 107 ~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 107 SEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIP-FIETS--AKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp CSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEECccCcccccCHHHHHHHHHHcCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 36899999999976432 22334566777788886 44433 4567888888888877765
No 170
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=67.98 E-value=4.6 Score=38.47 Aligned_cols=90 Identities=10% Similarity=0.047 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCc
Q 006673 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk 515 (636)
...+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-+++-++.- ..=.+.+.+.++....++.
T Consensus 88 ~~~~~~~i~~A~~lGa~~v~~~---p~--~~~l~~l~~~a~~~gv~-l~lEn~~~~~~~--~~~~~~~~~ll~~~~p~vg 159 (257)
T 3lmz_A 88 EEEIDRAFDYAKRVGVKLIVGV---PN--YELLPYVDKKVKEYDFH-YAIHLHGPDIKT--YPDATDVWVHTKDLDPRIG 159 (257)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEE---EC--GGGHHHHHHHHHHHTCE-EEEECCCTTCSS--SCSHHHHHHHHTTSCTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEec---CC--HHHHHHHHHHHHHcCCE-EEEecCCCcccc--cCCHHHHHHHHHhCCCCcc
Confidence 4578899999999999999963 32 46788889999999996 888888533321 1112333344432223577
Q ss_pred ccCCC------CCCHHHHHHHHHH
Q 006673 516 FLYPL------DVSIKEKIDTIAR 533 (636)
Q Consensus 516 ~LY~~------~~~L~eKIetIA~ 533 (636)
++||. ..++.+=|+....
T Consensus 160 ~~~D~~h~~~~g~d~~~~l~~~~~ 183 (257)
T 3lmz_A 160 MCLDVGHDLRNGCDPVADLKKYHT 183 (257)
T ss_dssp EEEEHHHHHHTTCCHHHHHHHHGG
T ss_pred EEEchhhHHHcCCCHHHHHHHhhc
Confidence 76652 2345555555544
No 171
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=67.90 E-value=12 Score=32.00 Aligned_cols=67 Identities=19% Similarity=0.122 Sum_probs=42.9
Q ss_pred HHHHHHHHHh---hcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 438 NLARHIANTK---AYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 438 NL~kHIeNi~---~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
++.+.++.++ .-++|++++.|+..-..+.+ .+.+++++++.+.. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 96 TLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAI-FVETS--AKNAININELFIEISRRI 167 (170)
T ss_dssp HHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEECB--TTTTBSHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCE-EEEEe--CCCCcCHHHHHHHHHHHH
Confidence 3444444444 45789999999976543222 34566778888875 44433 455788888888887765
No 172
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=67.70 E-value=3 Score=37.49 Aligned_cols=26 Identities=23% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.++.|++++. .|.||||++--|++.|
T Consensus 10 ~~~~i~i~G~----~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGT----PGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECS----TTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeC----CCCCHHHHHHHHHHHh
Confidence 4778999985 6999999998888776
No 173
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=67.55 E-value=4.8 Score=37.46 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=28.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|++|+++++ -|.||||++--|++.|+...|.+.+
T Consensus 23 ~~~~~i~~~G~----~GsGKsT~~~~l~~~l~~~~g~~~~ 58 (211)
T 1m7g_A 23 QRGLTIWLTGL----SASGKSTLAVELEHQLVRDRRVHAY 58 (211)
T ss_dssp SSCEEEEEECS----TTSSHHHHHHHHHHHHHHHHCCCEE
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHHhccccCCcEE
Confidence 56999999986 6999999999999998424465543
No 174
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=67.32 E-value=9.9 Score=33.97 Aligned_cols=58 Identities=14% Similarity=-0.063 Sum_probs=40.9
Q ss_pred cCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDS--KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
-++|+|+++|+-.-.. ....+..++++++.|+. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 127 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 127 DNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFD-FFEAS--AKENISVRQAFERLVDAICD 186 (191)
T ss_dssp TTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCccccccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHHH
Confidence 5899999999976422 22234566778888885 44333 56789999998888887643
No 175
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=67.17 E-value=14 Score=33.57 Aligned_cols=66 Identities=12% Similarity=0.014 Sum_probs=43.6
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 441 RHIANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+.+......++|+|+++|+..-..+.+ .+.+.++++..++. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 108 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 108 KEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYE-YFEIS--AKTAHNFGLPFLHLARIFTG 175 (218)
T ss_dssp HHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCE-EEEEB--TTTTBTTTHHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCc-EEEEe--cCCCCCHHHHHHHHHHHHhc
Confidence 334444445899999999987654433 24456777777775 33333 46688999999999888865
No 176
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=67.17 E-value=20 Score=32.46 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=40.3
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 006673 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 441 kHIeNi~~f--GvPvVVAINrF~tDT~aE--------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
+.++.++++ ++|+||++|+-.-..+.+ .+...+++++.+...+..+. ++=|+|-.+|-+.++
T Consensus 118 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~i~ 195 (201)
T 2gco_A 118 KWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS--AKTKEGVREVFEMAT 195 (201)
T ss_dssp THHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee--CCCCCCHHHHHHHHH
Confidence 344455554 899999999976533221 12445677777773244333 455788888877776
Q ss_pred HHh
Q 006673 505 RAC 507 (636)
Q Consensus 505 ~a~ 507 (636)
+.+
T Consensus 196 ~~~ 198 (201)
T 2gco_A 196 RAG 198 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 177
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=67.06 E-value=12 Score=40.24 Aligned_cols=67 Identities=10% Similarity=0.168 Sum_probs=46.8
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH----HHHHHHc----CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAV----RNAAMAA----GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v----~e~c~~~----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
-..|+..++.+|+|+||++|+-.--.+++++.+ ++++++. ++. ++.+..+ =|+|-.+|-+.+.+.+.
T Consensus 114 t~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~-ii~vSA~--~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 114 TGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS-IIPISAK--TGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC-EEECCTT--TCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce-EEEEECc--CCCCHHHHHHHHHHhhc
Confidence 355677788899999999999876666655544 4455544 344 5555544 47888899888888764
No 178
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=66.94 E-value=3.7 Score=37.17 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|++|.++|. -|.||||++--|..-+
T Consensus 4 ~~g~~i~l~G~----~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGP----SGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECS----TTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHhh
Confidence 45889999984 6999999987776544
No 179
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=66.80 E-value=12 Score=36.15 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=54.5
Q ss_pred HHhhcC-CcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCC--CCcccCCC
Q 006673 445 NTKAYG-ANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQ--PLKFLYPL 520 (636)
Q Consensus 445 Ni~~fG-vPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s--~fk~LY~~ 520 (636)
.+..++ +|+|+++|+..-....++. .+.++++..|++ ++.+. +.=|+|-.+|-+.+.+.+++... .+..-|
T Consensus 103 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~~~~S--a~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~-- 177 (271)
T 3k53_A 103 ELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVP-VIPTN--AKKGEGVEELKRMIALMAEGKVTTNPIIPRY-- 177 (271)
T ss_dssp HHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSC-EEECB--GGGTBTHHHHHHHHHHHHHTCCCCCCCCCCC--
T ss_pred HHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCc-EEEEE--eCCCCCHHHHHHHHHHHHhccccCCCCCcCC--
Confidence 344567 9999999997521111110 145566778887 54433 55689999999999998865322 233333
Q ss_pred CCCHHHHHHHHHH-HhCC
Q 006673 521 DVSIKEKIDTIAR-SYGA 537 (636)
Q Consensus 521 ~~~L~eKIetIA~-IYGA 537 (636)
...+++-++.|.. +-+.
T Consensus 178 ~~~~e~~~~~l~~~~~~~ 195 (271)
T 3k53_A 178 DEDIEREIKHISELLRGT 195 (271)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 2347777777776 6443
No 180
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=66.72 E-value=10 Score=34.34 Aligned_cols=72 Identities=8% Similarity=0.096 Sum_probs=46.4
Q ss_pred HhHHH-HHHHHHhhc--CCcEEEEecCCCCCCHHH----------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 006673 436 CVNLA-RHIANTKAY--GANVVVAVNMFATDSKAE----------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (636)
Q Consensus 436 ~~NL~-kHIeNi~~f--GvPvVVAINrF~tDT~aE----------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~a 502 (636)
+.++. ..++.++.+ ++|+||++|+..-..+.+ .+.+.+++++.|...+..+. ++=|+|-.+|-+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~ 173 (212)
T 2j0v_A 96 YENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS--SKTQQNVKAVFDT 173 (212)
T ss_dssp HHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc--CCCCCCHHHHHHH
Confidence 33443 445555554 899999999975322221 34556777888863344443 4557898899888
Q ss_pred HHHHhhc
Q 006673 503 VQRACEN 509 (636)
Q Consensus 503 Vv~a~e~ 509 (636)
+++.+.+
T Consensus 174 l~~~~~~ 180 (212)
T 2j0v_A 174 AIKVVLQ 180 (212)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 8888754
No 181
>1tz9_A Mannonate dehydratase; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium; 2.90A {Enterococcus faecalis} SCOP: c.1.15.6
Probab=66.68 E-value=11 Score=38.33 Aligned_cols=29 Identities=14% Similarity=0.096 Sum_probs=23.7
Q ss_pred HHHHHhHHHHHHHHHhhcCCcEEEEecCCC
Q 006673 432 VEAGCVNLARHIANTKAYGANVVVAVNMFA 461 (636)
Q Consensus 432 L~~G~~NL~kHIeNi~~fGvPvVVAINrF~ 461 (636)
.++.++++++.+++++++|+++|+. |-++
T Consensus 90 r~~~i~~~~~~i~~a~~lG~~~v~~-n~~p 118 (367)
T 1tz9_A 90 RDHYIDNYRQTLRNLGKCGISLVCY-SFKP 118 (367)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEE-CCCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEE-eCCC
Confidence 3567889999999999999998765 5443
No 182
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=66.67 E-value=2.4 Score=45.02 Aligned_cols=123 Identities=11% Similarity=-0.038 Sum_probs=62.1
Q ss_pred cccCHHHHHHHHhHHHHHHHHHhhcC----------CcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCcc
Q 006673 425 LNENVALVEAGCVNLARHIANTKAYG----------ANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGK 494 (636)
Q Consensus 425 ~~eNleaL~~G~~NL~kHIeNi~~fG----------vPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGe 494 (636)
..+=++.|++++..|.+.+.+++.=| ..--...+.|+--+-.+-.-+.+.. ..+ +-.-+.|.+.|.
T Consensus 228 ~leyl~rVr~~Y~~la~t~~~l~~~~~w~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~tl--f~~--~k~~el~~~~g~ 303 (376)
T 1of1_A 228 DLAMLAAIRRVYGLLANTVRYLQCGGSWREDWGQLSGTAVPPQGAEPQSNAGPRPHIGDTL--FTL--FRAPELLAPNGD 303 (376)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHGGGGTCC-------------CCCCCGGGSG--GGG--GCCGGGBCTTSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccCCCCcchhcccccccCCCCCchhhhH--HHH--hCCHhhcCCCCC
Confidence 34567888899999988888876221 1111122222110000000000000 011 122466888887
Q ss_pred chhHHHHHHHHHhhc--CCCCCcccCCCCCCHHHHHHHHHH-HhCC-CceeeCHHHHHHHHHH
Q 006673 495 GAVDLGIAVQRACEN--VTQPLKFLYPLDVSIKEKIDTIAR-SYGA-SGVEYSEEAEKQIEMY 553 (636)
Q Consensus 495 Ga~eLA~aVv~a~e~--~~s~fk~LY~~~~~L~eKIetIA~-IYGA-~~V~~S~~A~kqLk~i 553 (636)
.-.-+|...-.+++. +=+-|.+-| +.+.++=...+.. +=+- .-...++.+...|++.
T Consensus 304 ~~~~~~~~l~~l~~~l~~~~~~~~d~--~~~p~~c~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 364 (376)
T 1of1_A 304 LYNVFAWALDVLAKRLRSMHVFILDY--DQSPAGCRDALLQLTSGMVQTHVTTPGSIPTICDL 364 (376)
T ss_dssp BCHHHHHHHHHHHHHHHTCEEEEEEC--SSCHHHHHHHHHHHGGGSCCEEESSTTHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhccCeEEEEeC--CCCHHHHHHHHHHhcccccccccCChhhHHHHHHH
Confidence 766666655555442 112244444 4488888888888 7766 6666677766666653
No 183
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=66.66 E-value=1.3 Score=44.44 Aligned_cols=153 Identities=20% Similarity=0.279 Sum_probs=79.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC------ccccccCCCCCCce-----------e
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP------TFGIKGGAAGGGYS-----------Q 131 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP------~FGiKGGAaGGGys-----------q 131 (636)
..-||+++ |.|.|||+++..+.+.. .+.+. .++.+.-.++-. .||-..|+--|-.. -
T Consensus 25 ~~~vLi~G----e~GtGKt~lAr~i~~~~-~~~~~-~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g 98 (304)
T 1ojl_A 25 DATVLIHG----DSGTGKELVARALHACS-ARSDR-PLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 98 (304)
T ss_dssp TSCEEEES----CTTSCHHHHHHHHHHHS-SCSSS-CCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTS
T ss_pred CCcEEEEC----CCCchHHHHHHHHHHhC-cccCC-CeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCC
Confidence 44577877 66999999999888877 34443 344554444422 26654333221110 1
Q ss_pred eecCccccccccchhhHHHHHHhHHHHHHHhhhhc-----------------ccc---------CChhHhhhcc------
Q 006673 132 VIPMDEFNLHLTGDIHAITAANNLLAAAIDTRIFH-----------------EAS---------QSDKALFNRL------ 179 (636)
Q Consensus 132 v~Pme~iNLHfTGD~hAItaA~NLlaA~idn~i~~-----------------~n~---------~~~~~~~~~l------ 179 (636)
++=+|||+. +.. ...+.|..++++.-|. .|. .-+..||.||
T Consensus 99 ~L~LDEi~~-l~~------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~ 171 (304)
T 1ojl_A 99 TLFLDEIGD-ISP------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIE 171 (304)
T ss_dssp EEEEESCTT-CCH------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEE
T ss_pred EEEEecccc-CCH------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEe
Confidence 344566652 111 2344445556654321 111 0135688887
Q ss_pred CCCCCcCCcchhHHHHHHHHhhcC-CCCCCCCCCHHHHhhhccCCCCCCceeeeeccccccccccee
Q 006673 180 CPPNKEGERSFSNIMFRRLKKLGI-SKTKPEDLTPEEINRFARLDIDPASITWRRVMDVNDRFLRKI 245 (636)
Q Consensus 180 ~~~~~~~~r~~~~~~~~rl~~~~i-~~~~p~~l~~~~~~~~~~L~IDp~~I~w~Rv~D~NDR~LR~I 245 (636)
+|+.++-+..+....-..|+++.- ....+..++++-+..+... .|+. |-|.|+++
T Consensus 172 lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~-------~wpG----nvReL~~~ 227 (304)
T 1ojl_A 172 MPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY-------DWPG----NIRELENA 227 (304)
T ss_dssp CCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC-------CCSS----HHHHHHHH
T ss_pred ccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC-------CCCC----CHHHHHHH
Confidence 787665444444333333444322 1223456888888877643 4653 66777765
No 184
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=66.55 E-value=8.7 Score=34.23 Aligned_cols=69 Identities=13% Similarity=-0.038 Sum_probs=44.9
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++.+.++.++. .++|+||++|+..-..+ ...+.+++++.+.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 114 ~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 114 AVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLL-FLETS--ALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp HTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 344445555544 58999999999764322 1245567788888885 44433 4557888888877776653
No 185
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=66.38 E-value=20 Score=33.11 Aligned_cols=56 Identities=9% Similarity=0.043 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHcCC-CeEEEcCccccCc
Q 006673 438 NLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAAGA-FDAVVCSHHAHGG 493 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~--tDT~aEI~~v~e~c~~~Gv-~~~avs~~wa~GG 493 (636)
...+-|+.++++|+++.+-..-.+ .|+.+|++.+.+++++.|. ..+.+...+..|+
T Consensus 148 ~~~~~i~~l~~~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3c8f_A 148 RTLEFAKYLANKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGK 206 (245)
T ss_dssp HHHHHHHHHHHHTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEEEEECCCCSH
T ss_pred HHHHHHHHHHhcCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeEEEeccccCh
Confidence 444556666778888776544333 5899999999999999995 4344444444443
No 186
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=66.36 E-value=2.6 Score=41.51 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=51.6
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
+..++.+++|+||++|+..-....++. .+.++++..|++ ++.+. ++-|+|-.+|-+.+.+.+.+. ......| .
T Consensus 105 ~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~-~i~~S--A~~g~gi~el~~~i~~~~~~~-~~~~~~~--~ 178 (274)
T 3i8s_A 105 TLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCP-VIPLV--STRGRGIEALKLAIDRYKANE-NVELVHY--A 178 (274)
T ss_dssp HHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSC-EEECC--CGGGHHHHHHHHHHHTCCCCC-CCCCCCC--C
T ss_pred HHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCC-EEEEE--cCCCCCHHHHHHHHHHHHhcC-CCcccCC--C
Confidence 344556799999999996432111111 245667778887 44433 567899999998888776542 1122233 3
Q ss_pred CCHHHHHHHHHH
Q 006673 522 VSIKEKIDTIAR 533 (636)
Q Consensus 522 ~~L~eKIetIA~ 533 (636)
..+++.++.|..
T Consensus 179 ~~l~~~~~~i~~ 190 (274)
T 3i8s_A 179 QPLLNEADSLAK 190 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346666666655
No 187
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=66.32 E-value=11 Score=33.89 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=39.1
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHH--------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 443 IANTKAYGANVVVAVNMFATDSKA--------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~a--------EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.....++|+||++|+..-..+. ..+..++++++.|+. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 126 i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 126 IEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGAL-FCETS--AKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCe-EEEee--CCCCCCHHHHHHHHHHHHH
Confidence 333334589999999997543111 124556777778885 44443 4557888888888877664
No 188
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=66.13 E-value=3.7 Score=37.86 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|++|.+++. -|.||||++--|+..+
T Consensus 27 ~~g~~i~l~G~----~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGV----SGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECC----TTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHhh
Confidence 56999999984 6999999998887655
No 189
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=66.10 E-value=3.9 Score=36.43 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=21.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..|++|++++. -|.||||++--|++-+
T Consensus 6 ~~g~~i~l~G~----~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGV----SGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcC----CCCCHHHHHHHHHHhh
Confidence 45899999985 6999999987776654
No 190
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=65.99 E-value=23 Score=33.70 Aligned_cols=115 Identities=9% Similarity=0.121 Sum_probs=71.2
Q ss_pred ccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCC-
Q 006673 385 KCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT- 462 (636)
Q Consensus 385 kcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t- 462 (636)
.++..|+++.++.+ |+.-. -++..+|.+..++....++++|+..+.+|.+.||.- ..+..
T Consensus 55 ~l~~~gl~~~~~~~---------h~~~~---------~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~ 116 (287)
T 2x7v_A 55 EMKKHGIDWENAFC---------HSGYL---------INLASPKDDIWQKSVELLKKEVEICRKLGIRYLNIHPGSHLGT 116 (287)
T ss_dssp HHHHHTCCGGGEEE---------ECCTT---------CCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCEECTTS
T ss_pred HHHHcCCCcceeEE---------ecccc---------cccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 46778888765533 33211 123456777788899999999999999999998762 22333
Q ss_pred CCHHHH----HHHHHHHHH-cCCCeEEEcCccccCcc--chhHHHHHHHHHhhcCCCCCcccCC
Q 006673 463 DSKAEL----NAVRNAAMA-AGAFDAVVCSHHAHGGK--GAVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 463 DT~aEI----~~v~e~c~~-~Gv~~~avs~~wa~GGe--Ga~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
++++.+ +.+++.|++ .|+. +++-+++..+.. ...+-+..+++.+.. +.++.++||
T Consensus 117 ~~~~~~~~~~~~l~~l~~~~~gv~-l~lEn~~~~~~~~~~~~~~~~~l~~~~~~-~~~vg~~~D 178 (287)
T 2x7v_A 117 GEEEGIDRIVRGLNEVLNNTEGVV-ILLENVSQKGGNIGYKLEQLKKIRDLVDQ-RDRVAITYD 178 (287)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSCE-EEEECCCCCTTEECSSHHHHHHHHHHCSC-GGGEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHcccCCCE-EEEeCCCCCCCccCCCHHHHHHHHHhcCC-CCCeEEEEE
Confidence 334444 345555554 5885 888888654431 134445566666532 135777776
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=65.54 E-value=5.9 Score=36.71 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|.+|.|++ |.|.||||++--|...|.
T Consensus 20 ~~~~~i~i~G----~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDG----LSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 4588999998 579999999999988873
No 192
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=65.54 E-value=7.9 Score=33.98 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=42.5
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 441 RHIANTKAYGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
..+......++|++|++|+..-..+ .+.+.+++++++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 106 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 106 TDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCE-EEEec--CCCCCCHHHHHHHHHHHHH
Confidence 3344445578999999999765322 2234566788888885 44443 4557888887777766653
No 193
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=65.48 E-value=13 Score=38.13 Aligned_cols=84 Identities=19% Similarity=0.243 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhhcCCcE-EEEecCCCCC-C---------HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 437 VNLARHIANTKAYGANV-VVAVNMFATD-S---------KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPv-VVAINrF~tD-T---------~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
....+-++.++++|+|+ =|.+|+.... + +.+-+.+.+.+++.+......--....-=.|-..|. ++.
T Consensus 252 ~e~~r~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~e~~g~~~L~-~~~- 329 (349)
T 3ug7_A 252 LESERAMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRTEAKGIETLK-QIA- 329 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSSCSCSHHHHH-HHH-
T ss_pred HHHHHHHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCCCCCHHHHH-HHH-
Confidence 35777788889999999 5778974332 2 234566777777777763332222333333333332 111
Q ss_pred HhhcCCCCCcccCCCCCCHHHHHHHH
Q 006673 506 ACENVTQPLKFLYPLDVSIKEKIDTI 531 (636)
Q Consensus 506 a~e~~~s~fk~LY~~~~~L~eKIetI 531 (636)
+.||..++|..+||+.+
T Consensus 330 ---------~~l~~~~~~~~~~~~~~ 346 (349)
T 3ug7_A 330 ---------KILYGEEEKEEQKIEQK 346 (349)
T ss_dssp ---------HHHC-------------
T ss_pred ---------HHHcCCCCccccccccc
Confidence 34677777888887765
No 194
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=65.48 E-value=2.6 Score=41.56 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=31.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQ 111 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRe 111 (636)
.|+.|++++ |.|.||||+++-|++.....+.-.++..-|+
T Consensus 33 ~g~~ilI~G----psGsGKStLA~~La~~g~~iIsdDs~~v~~~ 72 (205)
T 2qmh_A 33 YGLGVLITG----DSGVGKSETALELVQRGHRLIADDRVDVYQQ 72 (205)
T ss_dssp TTEEEEEEC----CCTTTTHHHHHHHHTTTCEEEESSEEEEEEC
T ss_pred CCEEEEEEC----CCCCCHHHHHHHHHHhCCeEEecchhheeec
Confidence 588999998 6699999999999887754456666655554
No 195
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=65.28 E-value=33 Score=30.10 Aligned_cols=108 Identities=12% Similarity=0.139 Sum_probs=58.2
Q ss_pred CchHHHHHHHHhhcCCCCeEEeeccccccc---cchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCccc
Q 006673 347 NSSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHA 423 (636)
Q Consensus 347 ~nSviAt~~aLklag~~dyvVTEAGFGaDl---GaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~ 423 (636)
-.+.++.++.-+-. ++.|.-.|++.+- +.+++-.. ....+||.|||-. |... -
T Consensus 24 ~~~~l~~~l~~~~~---~~~v~n~g~~G~~~~~~~~~~~~~---~~~~~pd~vvi~~---------G~ND---------~ 79 (185)
T 3hp4_A 24 WVKLLQDKYDAEQS---DIVLINASISGETSGGALRRLDAL---LEQYEPTHVLIEL---------GAND---------G 79 (185)
T ss_dssp HHHHHHHHHHHTTC---CEEEEECCCTTCCHHHHHHHHHHH---HHHHCCSEEEEEC---------CHHH---------H
T ss_pred HHHHHHHHHHhcCC---cEEEEECCcCCccHHHHHHHHHHH---HhhcCCCEEEEEe---------eccc---------C
Confidence 34566666555433 6777777776543 22232221 1123799888754 2211 1
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCC----CCCHHH-HHHHHHHHHHcCCC
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFA----TDSKAE-LNAVRNAAMAAGAF 481 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~----tDT~aE-I~~v~e~c~~~Gv~ 481 (636)
+...+.+..++ ||.+-|+.+++.+.++|+.--..| .+..++ -+.+++.|++.|+.
T Consensus 80 ~~~~~~~~~~~---~~~~~i~~~~~~~~~vvl~~~~~p~~~~~~~~~~~~~~~~~~a~~~~~~ 139 (185)
T 3hp4_A 80 LRGFPVKKMQT---NLTALVKKSQAANAMTALMEIYIPPNYGPRYSKMFTSSFTQISEDTNAH 139 (185)
T ss_dssp HTTCCHHHHHH---HHHHHHHHHHHTTCEEEEECCCCCSTTCHHHHHHHHHHHHHHHHHHCCE
T ss_pred CCCcCHHHHHH---HHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHHHHHHHHHHcCCE
Confidence 11223444444 777778888888877765421122 222233 35668889988885
No 196
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=65.05 E-value=8 Score=34.83 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=41.3
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.....++|++|++|+-.-..+.+ .+.+++++++. +.. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 124 i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 189 (192)
T 2il1_A 124 IDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMR-FCEAS--AKDNFNVDEIFLKLVDDIL 189 (192)
T ss_dssp HHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCE-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCe-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 3444446899999999976543222 24456777764 554 44333 6778998888888877664
No 197
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=64.95 E-value=7.9 Score=40.74 Aligned_cols=59 Identities=20% Similarity=0.218 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhhcCCc-EEEEecCCCCCC----HHH----HHHHHHHHHHcCCC----eEEEcCccccCccchh
Q 006673 437 VNLARHIANTKAYGAN-VVVAVNMFATDS----KAE----LNAVRNAAMAAGAF----DAVVCSHHAHGGKGAV 497 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvP-vVVAINrF~tDT----~aE----I~~v~e~c~~~Gv~----~~avs~~wa~GGeGa~ 497 (636)
....+|+..++.+|+| +||++|+..-.. ++. .+.+++++++.|.. .++.+..+ =|+|-.
T Consensus 130 ~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~--~g~~v~ 201 (435)
T 1jny_A 130 GQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAP--SGDNIT 201 (435)
T ss_dssp CHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTT--TTBTTT
T ss_pred hHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecc--cCcccc
Confidence 3678899999999985 899999976543 333 34566777777731 25555444 366643
No 198
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=64.92 E-value=3.7 Score=36.93 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
+.|+.+++++ |-|.||||++..++..+...-|..
T Consensus 36 ~~g~~~~l~G----~~G~GKTtL~~~i~~~~~~~~g~~ 69 (180)
T 3ec2_A 36 EEGKGLTFVG----SPGVGKTHLAVATLKAIYEKKGIR 69 (180)
T ss_dssp GGCCEEEECC----SSSSSHHHHHHHHHHHHHHHSCCC
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHHHHHHHcCCe
Confidence 3488899988 779999999999988883234543
No 199
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=64.92 E-value=2.5 Score=44.27 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=32.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhH-HHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTT-VGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTtt-IGL~~aL~~~lg~~~~~~lReP 112 (636)
++|++|.+-|+ -|.||||++ -=|.+.|. .-|. ++..|||
T Consensus 10 ~~~~~I~iEG~----~GaGKTT~~~~~L~~~l~-~~g~--vv~trEP 49 (341)
T 1osn_A 10 MGVLRIYLDGA----YGIGKTTAAEEFLHHFAI-TPNR--ILLIGEP 49 (341)
T ss_dssp EEEEEEEEEES----SSSCTTHHHHHHHHTTTT-SGGG--EEEECCC
T ss_pred CCceEEEEeCC----CCCCHHHHHHHHHHHHHh-hCCc--EEEEeCC
Confidence 56899999996 799999999 88888874 4453 8999998
No 200
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=64.88 E-value=4.4 Score=40.25 Aligned_cols=86 Identities=17% Similarity=0.125 Sum_probs=54.9
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHH-HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC-CCCcccCCCC
Q 006673 444 ANTKAYGANVVVAVNMFATDSKAEL-NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT-QPLKFLYPLD 521 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~aEI-~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~-s~fk~LY~~~ 521 (636)
..+..+++|+||++|+..-....++ ..+.++++..|++ ++.+. ++=|+|-.+|-+.+++.+.... .+++.-| .
T Consensus 101 ~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~-vi~~S--A~~g~gi~el~~~i~~~~~~~~~~~~~~~~--~ 175 (272)
T 3b1v_A 101 TQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVP-VVATS--ALKQTGVDQVVKKAAHTTTSTVGDLAFPIY--D 175 (272)
T ss_dssp HHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--TTTTBSHHHHHHHHHHSCTTTCCSCCCCCC--C
T ss_pred HHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCC-EEEEE--ccCCCCHHHHHHHHHHHHhhccCCCccCCC--C
Confidence 3445589999999998532111000 1235667778987 44433 5668999999999998775322 2244456 3
Q ss_pred CCHHHHHHHHHH-H
Q 006673 522 VSIKEKIDTIAR-S 534 (636)
Q Consensus 522 ~~L~eKIetIA~-I 534 (636)
..+++-|+.|.. +
T Consensus 176 ~~~e~~i~~~~~~~ 189 (272)
T 3b1v_A 176 DRLEAAISQILEVL 189 (272)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 467877887777 5
No 201
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=64.78 E-value=16 Score=33.28 Aligned_cols=71 Identities=13% Similarity=0.008 Sum_probs=46.4
Q ss_pred HhHHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 436 CVNLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
|.++.+.++.+++ .++|+|++.|+-.-..+. ..+...+++++.++. +.. .=++=|+|-.+|-+.+++.+.+
T Consensus 112 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~-~~e--~Sa~~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 112 FSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCK-HIE--TSAALHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp HHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCE-EEE--EBTTTTBSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCE-EEE--EcCCCCCCHHHHHHHHHHHHHH
Confidence 3345455555544 589999999997643221 234456778888875 433 3356788999988888887754
No 202
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=64.78 E-value=5.6 Score=36.29 Aligned_cols=34 Identities=15% Similarity=0.314 Sum_probs=27.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
.+.++-|+++| |.|.||||++..+++.+. .-|.+
T Consensus 49 ~~~~~~~ll~G----~~G~GKT~la~~l~~~~~-~~~~~ 82 (242)
T 3bos_A 49 GDGVQAIYLWG----PVKSGRTHLIHAACARAN-ELERR 82 (242)
T ss_dssp TCSCSEEEEEC----STTSSHHHHHHHHHHHHH-HTTCC
T ss_pred CCCCCeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 34678899987 579999999999999995 44544
No 203
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=64.77 E-value=8.4 Score=33.45 Aligned_cols=57 Identities=12% Similarity=-0.045 Sum_probs=38.1
Q ss_pred CCc-EEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 450 GAN-VVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 450 GvP-vVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+.| +|++.|+..-..+.+ .+.+.+++++.|+. +..+. ++=|+|-.+|-+.+++.+.+
T Consensus 114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFS-SHFVS--AKTGDSVFLCFQKVAAEILG 173 (178)
T ss_dssp CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCE-EEEEC--TTTCTTHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEEccccccccccCHHHHHHHHHHcCCc-EEEEe--CCCCCCHHHHHHHHHHHHHh
Confidence 677 789999976432211 34556778888885 44443 34578888888888877643
No 204
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=64.39 E-value=3.4 Score=36.59 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=20.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++.|.+|+. .|.||||++--|+..|
T Consensus 4 ~~~i~l~G~----~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGP----MGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECC----TTSCHHHHHHHHHHHT
T ss_pred CCeEEEECC----CCCCHHHHHHHHHHHh
Confidence 678888884 6999999988777665
No 205
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=64.24 E-value=4.3 Score=40.51 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..+++|+++| |.|.||||++--|.+.+
T Consensus 31 ~~~~livl~G----~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGG----QPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEEC----CTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4588999999 57999999998887766
No 206
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=64.09 E-value=7.1 Score=35.49 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=39.3
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
...++|+||++|+..-..+.+ .+.+.++|++.++. +..+. ++=|+|-.+|-+.+++.+.
T Consensus 127 ~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--A~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 127 ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELM-FLETS--ALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCE-EEEEC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 345899999999976533222 34567788888885 44333 4557888887777766653
No 207
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=63.79 E-value=29 Score=33.47 Aligned_cols=104 Identities=11% Similarity=0.087 Sum_probs=64.3
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEec--C-CCCCCHHH-------HHHHHHHHHHcCCCeEEEcCccccCccc
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN--M-FATDSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAIN--r-F~tDT~aE-------I~~v~e~c~~~Gv~~~avs~~wa~GGeG 495 (636)
.++.+..++.+..+++.|+..+.+|.+.||.-- . +..++++. ++.+.+.+++.|+. +++-+++..-. .
T Consensus 97 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~-~ 174 (295)
T 3cqj_A 97 SEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVT-LAMEIMDYPLM-N 174 (295)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCSSGGG-C
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCE-EEEeeCCCccc-C
Confidence 456677788899999999999999999998531 1 12244443 34455566778996 88877753211 1
Q ss_pred hhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHH
Q 006673 496 AVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (636)
Q Consensus 496 a~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA~ 533 (636)
..+-+.++++.+.. .++.+.||. ..++.+-|+....
T Consensus 175 ~~~~~~~l~~~v~~--~~vg~~~D~~h~~~~g~d~~~~l~~~~~ 216 (295)
T 3cqj_A 175 SISKALGYAHYLNN--PWFQLYPDIGNLSAWDNDVQMELQAGIG 216 (295)
T ss_dssp SHHHHHHHHHHHCC--TTEEEECBHHHHHSSSCCHHHHHHHTGG
T ss_pred CHHHHHHHHHhcCC--CCeEEEeccchHhhcCCCHHHHHHHhcc
Confidence 23444555665532 357776653 3445555555443
No 208
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=63.74 E-value=3.8 Score=36.50 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.2
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+++|++++. -|.||||++--|++.|
T Consensus 3 ~~~I~l~G~----~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGG----PGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 578999985 6999999998887776
No 209
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=63.61 E-value=20 Score=37.04 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhc-----CCcEEEEecCCCCCCHHHHHHHHHHHHHcC--CCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 438 NLARHIANTKAY-----GANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 438 NL~kHIeNi~~f-----GvPvVVAINrF~tDT~aEI~~v~e~c~~~G--v~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
++....+.+++| +.|++|++|+-.-..++| .+.+++++.+ .. +. ..=+.=|+|-.+|-+.+.+.+.+.
T Consensus 257 ~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~~~-v~--~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 257 DYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE--NLEAFKEKLTDDYP-VF--PISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp HHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH--HHHHHHHHCCSCCC-BC--CCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH--HHHHHHHHhhcCCC-EE--EEECCCCcCHHHHHHHHHHHHhhC
Confidence 344444455543 799999999987654433 3455555555 33 22 233456899999999999998653
Q ss_pred CCCCcccCCCCC
Q 006673 511 TQPLKFLYPLDV 522 (636)
Q Consensus 511 ~s~fk~LY~~~~ 522 (636)
.-.++|+.++
T Consensus 332 --~~~~~y~~e~ 341 (342)
T 1lnz_A 332 --PEFPLYDEEE 341 (342)
T ss_dssp --CCCCSSCSCC
T ss_pred --ccccCCCccc
Confidence 2346787653
No 210
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=63.49 E-value=4 Score=37.20 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=22.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~a 96 (636)
++++.|++|+. -|.||||++--|++.
T Consensus 8 ~~~~~I~l~G~----~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGT----PGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECS----TTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECC----CCCCHHHHHHHHHHh
Confidence 46889999996 699999999888876
No 211
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=63.36 E-value=22 Score=33.89 Aligned_cols=94 Identities=15% Similarity=0.140 Sum_probs=58.7
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-----cC--CC--CCCHHHHH-------HHHHHHHHcCCCeEEEcC
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-----NM--FA--TDSKAELN-------AVRNAAMAAGAFDAVVCS 487 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-----Nr--F~--tDT~aEI~-------~v~e~c~~~Gv~~~avs~ 487 (636)
+..+|.+.-++.+..+++.|+..+.+|.+.||.. .+ |. .++++.++ .+.+.+++.|+. +++-+
T Consensus 75 l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn 153 (290)
T 2qul_A 75 FASPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGII-YALEV 153 (290)
T ss_dssp TTCSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCE-EEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEe
Confidence 3345667778889999999999999999999852 22 32 24555443 344556678996 77776
Q ss_pred cccc-Cc-cchhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 488 HHAH-GG-KGAVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 488 ~wa~-GG-eGa~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
+... +. -...+-+.++++.+.. .++.+++|.
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~g~~~D~ 186 (290)
T 2qul_A 154 VNRFEQWLCNDAKEAIAFADAVDS--PACKVQLDT 186 (290)
T ss_dssp CCTTTCSSCCSHHHHHHHHHHHCC--TTEEEEEEH
T ss_pred CccccccccCCHHHHHHHHHHcCC--CCEEEEEEc
Confidence 6421 11 1233444455666542 357777764
No 212
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=63.07 E-value=24 Score=31.62 Aligned_cols=70 Identities=9% Similarity=-0.108 Sum_probs=45.5
Q ss_pred HhHHHHHHHHHhh----cCCcEEEEecCCCC----CCHHHHHHHHHHHHHcC-CCeEEEcCccccCccchhHHHHHHHHH
Q 006673 436 CVNLARHIANTKA----YGANVVVAVNMFAT----DSKAELNAVRNAAMAAG-AFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 436 ~~NL~kHIeNi~~----fGvPvVVAINrF~t----DT~aEI~~v~e~c~~~G-v~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
|.++...++.+++ .++|+|++.|+..- +..-..+.++++|.+.+ +. +..+ =++=|+|-.+|-+.+++.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~e~--Sa~~~~gv~~lf~~l~~~ 177 (184)
T 3ihw_A 101 FQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCT-YYET--CATYGLNVERVFQDVAQK 177 (184)
T ss_dssp HHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCE-EEEE--BTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCe-EEEe--cCCCCCCHHHHHHHHHHH
Confidence 4445555555555 47999999999654 12223345677888887 43 4333 357788988888888776
Q ss_pred hh
Q 006673 507 CE 508 (636)
Q Consensus 507 ~e 508 (636)
+.
T Consensus 178 i~ 179 (184)
T 3ihw_A 178 VV 179 (184)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 213
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=63.03 E-value=16 Score=33.09 Aligned_cols=57 Identities=5% Similarity=0.001 Sum_probs=38.2
Q ss_pred hHHHHHHHHHhhcCCcEEEEecCCC--CCCHHHHHHHHHHHHHc-CC-CeEEEcCccccCc
Q 006673 437 VNLARHIANTKAYGANVVVAVNMFA--TDSKAELNAVRNAAMAA-GA-FDAVVCSHHAHGG 493 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAINrF~--tDT~aEI~~v~e~c~~~-Gv-~~~avs~~wa~GG 493 (636)
....+-|+.+++.|+++.|...-.+ .|+.+|++.+.+++++. |+ ..+.+.....-|.
T Consensus 79 ~~i~~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~l~~~~p~g~ 139 (182)
T 3can_A 79 ELILKNIRRVAEADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIINLLPYHDIGK 139 (182)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEEEEECCC---
T ss_pred HHHHHHHHHHHhCCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEEEecCcccCH
Confidence 3444455556667888877665444 48999999999999998 97 5555554444443
No 214
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=63.00 E-value=9.1 Score=34.38 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=37.8
Q ss_pred cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCcc-chhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGK-GAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGe-Ga~eLA~aVv~a~e 508 (636)
.++|+||+.|+..-..+ ...+.+++++++.++. +..+. ++=|+ |-.+|-+.+++.+.
T Consensus 131 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 131 KNVTLILVGNKADLDHSRQVSTEEGEKLATELACA-FYECS--ACTGEGNITEIFYELCREVR 190 (196)
T ss_dssp SCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSE-EEECC--TTTCTTCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECcccccccccCHHHHHHHHHHhCCe-EEEEC--CCcCCcCHHHHHHHHHHHHH
Confidence 68999999999764332 1234556777777875 44443 44566 77777777776664
No 215
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=62.95 E-value=7.9 Score=39.38 Aligned_cols=42 Identities=29% Similarity=0.218 Sum_probs=33.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.+|+.|.+++ |-|+||||+..-|+..+ ...|.++.+.=..|.
T Consensus 54 ~~~~~i~i~G----~~g~GKSTl~~~l~~~~-~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 54 GNTLRLGVTG----TPGAGKSTFLEAFGMLL-IREGLKVAVIAVDPS 95 (341)
T ss_dssp SCSEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCEEEEEECCC
T ss_pred CCCEEEEEEc----CCCCCHHHHHHHHHHHH-HhcCCeEEEEeecCC
Confidence 5688888877 67999999999999999 467888776666664
No 216
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=62.83 E-value=14 Score=32.09 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCHHH------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 442 HIANTKAY--GANVVVAVNMFATDSKAE------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tDT~aE------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++.++++ ++|+|+++|+..-..+.+ .+...+++++.|...+..+. ++=|+|-.+|-+.+++.+
T Consensus 102 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 102 WIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECS--SKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECC--TTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEE--CCCCCCHHHHHHHHHHHH
Confidence 33444443 899999999976422222 24556777778863244333 566788888888887765
No 217
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=62.68 E-value=16 Score=34.61 Aligned_cols=85 Identities=11% Similarity=-0.028 Sum_probs=52.9
Q ss_pred HHHHHHhHHHHHHHHHhhcCCcEEEEecCCCC--C-CH-------HHHHHHHHHHHHcCCCeEEEcCc-----cc-cCc-
Q 006673 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT--D-SK-------AELNAVRNAAMAAGAFDAVVCSH-----HA-HGG- 493 (636)
Q Consensus 431 aL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t--D-T~-------aEI~~v~e~c~~~Gv~~~avs~~-----wa-~GG- 493 (636)
..++.+..+++.|+..+.+|.+.||. ..++. + ++ +.+..+.+.|++.|+. +++-++ |. ++.
T Consensus 78 ~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~~~~~~~ 155 (281)
T 3u0h_A 78 VFLRELSLLPDRARLCARLGARSVTA-FLWPSMDEEPVRYISQLARRIRQVAVELLPLGMR-VGLEYVGPHHLRHRRYPF 155 (281)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCCEEEE-ECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEEECCCCGGGCCSSEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEE-eecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCE-EEEEeccccccccccccc
Confidence 46778899999999999999999984 23332 1 22 2234445556688996 777666 21 111
Q ss_pred cchhHHHHHHHHHhhcCCCCCcccCC
Q 006673 494 KGAVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 494 eGa~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
-...+-+.++++.+.. .++.++||
T Consensus 156 ~~~~~~~~~l~~~v~~--~~vg~~~D 179 (281)
T 3u0h_A 156 VQSLADLKTFWEAIGA--PNVGALVD 179 (281)
T ss_dssp CCSHHHHHHHHHHHCC--TTEEEEEE
T ss_pred cCCHHHHHHHHHHcCC--CCeeEEee
Confidence 1234445566666642 35777776
No 218
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=62.51 E-value=16 Score=31.56 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=44.0
Q ss_pred HHHHHHHHHhhc--CCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKAY--GANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~f--GvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.+.++.+++. ++|+||++|+..-..+ .+.+...+++...|+. +..+. ++=|+|-.+|-+.+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 99 NVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQ-LFETS--AKENVNVEEMFNCITELVL 170 (181)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCe-EEEEE--CCCCCCHHHHHHHHHHHHH
Confidence 344444444443 6999999999764322 2234567788888886 44333 5568888888888877764
No 219
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.50 E-value=2.6 Score=44.21 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+++|+|+|+| |.|.||||+++-|++.|+
T Consensus 38 ~~~~lIvI~G----PTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMG----ATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEEC----STTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEEC----CCCCCHHHHHHHHHHHCC
Confidence 4578999988 459999999999988774
No 220
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=62.48 E-value=2.7 Score=43.77 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=28.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
+.|++|.|-|+ -|.||||.+--|++.|. ..| ++..|||.
T Consensus 2 ~~~~fI~~EG~----dGsGKTT~~~~La~~L~-~~g---v~~trEPg 40 (331)
T 1e2k_A 2 PTLLRVYIDGP----HGMGKTTTTQLLVALGS-RDD---IVYVPEPM 40 (331)
T ss_dssp CEEEEEEECSC----TTSSHHHHHHHHTC-----CC---EEEECCCH
T ss_pred CccEEEEEECC----CCCCHHHHHHHHHHHhh-hCC---EEEEeCCC
Confidence 34678888886 79999999998888884 444 88999995
No 221
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=62.35 E-value=13 Score=38.63 Aligned_cols=70 Identities=11% Similarity=0.174 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhcCCcE-EEEec-CCCCCCHHHHHH----HHHHHHHcCC--CeEEE--cCccc-cCccchhHHHHHHHHH
Q 006673 438 NLARHIANTKAYGANV-VVAVN-MFATDSKAELNA----VRNAAMAAGA--FDAVV--CSHHA-HGGKGAVDLGIAVQRA 506 (636)
Q Consensus 438 NL~kHIeNi~~fGvPv-VVAIN-rF~tDT~aEI~~----v~e~c~~~Gv--~~~av--s~~wa-~GGeGa~eLA~aVv~a 506 (636)
....|+..++.+|+|. ||++| +-.- .++.++. +++++++.+. ..++. ...+. .=|+|-.+|-+.+.+.
T Consensus 99 qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~ 177 (370)
T 2elf_A 99 HTGECIIALDLLGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEV 177 (370)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhh
Confidence 5677888899999999 99999 8877 5554443 4444444432 12443 32222 0077777777777766
Q ss_pred hh
Q 006673 507 CE 508 (636)
Q Consensus 507 ~e 508 (636)
++
T Consensus 178 ~~ 179 (370)
T 2elf_A 178 AE 179 (370)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 222
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=62.19 E-value=5.5 Score=36.12 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=21.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|++|.++| |-|.||||+.--|+.-+
T Consensus 5 ~~g~ii~l~G----p~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 5 NKANLFIISA----PSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----cCCCCHHHHHHHHHhhC
Confidence 3588999888 56999999987775443
No 223
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=62.18 E-value=5.3 Score=35.49 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=21.9
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..++|++++. -|.||||++--|++.|
T Consensus 5 ~~~~I~l~G~----~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGG----PGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEES----TTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3578999996 6999999998888776
No 224
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=62.18 E-value=4.2 Score=37.15 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=22.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++.++|+++|. .|.||||++--|++.+
T Consensus 13 ~~~~~I~l~G~----~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGG----PGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECS----TTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 44679999995 7999999988887766
No 225
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=62.15 E-value=21 Score=43.64 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=59.5
Q ss_pred cchhccccccccCCCC-cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCc-EE
Q 006673 377 GAEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VV 454 (636)
Q Consensus 377 GaEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvP-vV 454 (636)
|-|+|. +-+..++. .|++|+|.-+.- |.. .....|+..++..|+| +|
T Consensus 368 GHedF~--~~mi~gas~AD~aILVVDAtd-----Gv~------------------------~QTrEhL~ll~~lgIP~II 416 (1289)
T 3avx_A 368 GHADYV--KNMITGAAQMDGAILVVAATD-----GPM------------------------PQTREHILLGRQVGVPYII 416 (1289)
T ss_dssp CHHHHH--HHHHHTSCCCSEEEEEEETTT-----CSC------------------------TTHHHHHHHHHHHTCSCEE
T ss_pred ChHHHH--HHHHHHHhhCCEEEEEEcCCc-----cCc------------------------HHHHHHHHHHHHcCCCeEE
Confidence 445664 34444554 899999986542 110 1245677777789999 79
Q ss_pred EEecCCCCCCHHH-H----HHHHHHHHHcC-----CCeEEEcCcccc-Cc-----cchhHHHHHHHHHh
Q 006673 455 VAVNMFATDSKAE-L----NAVRNAAMAAG-----AFDAVVCSHHAH-GG-----KGAVDLGIAVQRAC 507 (636)
Q Consensus 455 VAINrF~tDT~aE-I----~~v~e~c~~~G-----v~~~avs~~wa~-GG-----eGa~eLA~aVv~a~ 507 (636)
|++|+-.-..++| + +.+++++++.| ++ ++.+..+.. -| +|-.+|-+.+.+.+
T Consensus 417 VVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp-~IpvSAktG~ng~~~w~eGI~eLleaL~~~I 484 (1289)
T 3avx_A 417 VFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTP-IVRGSALKALEGDAEWEAKILELAGFLDSYI 484 (1289)
T ss_dssp EEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCC-EEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred EEEeecccccchhhHHHHHHHHHHHHHhcccccccee-EEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence 9999987643222 2 34566777776 33 555555542 11 45566777766654
No 226
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=62.08 E-value=44 Score=31.40 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=60.0
Q ss_pred cccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCCCC----HHH-------HHHHHHHHHHcCCCeEEEcCccc
Q 006673 423 AYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS----KAE-------LNAVRNAAMAAGAFDAVVCSHHA 490 (636)
Q Consensus 423 ~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~tDT----~aE-------I~~v~e~c~~~Gv~~~avs~~wa 490 (636)
++..+|.+..++....++++|+-.+.+|.+.||.- ...+.+. ++. +..+.+.+++.|+. +++-++..
T Consensus 62 ~l~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lEn~~~ 140 (254)
T 3ayv_A 62 DLLSPDPEVRGLTLRRLLFGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVR-LLLENSHE 140 (254)
T ss_dssp CTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCE-EEEECSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCE-EEEcCCCC
Confidence 34567778889999999999999999999998764 3333332 222 23445556678996 88877753
Q ss_pred cCccchhHHHHHHHHHhhcCCCCCcccCC
Q 006673 491 HGGKGAVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 491 ~GGeGa~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
. ..+-+..+++.+. .++.++||
T Consensus 141 ~----~~~~~~~l~~~v~---~~vg~~~D 162 (254)
T 3ayv_A 141 P----HPEALRPVLEAHA---GELGFCFD 162 (254)
T ss_dssp S----SGGGTHHHHHHHT---TSSEEEEE
T ss_pred C----CHHHHHHHHHhcC---cCEEEEEE
Confidence 2 3333445555553 35888887
No 227
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=62.00 E-value=17 Score=36.34 Aligned_cols=61 Identities=20% Similarity=0.128 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHH---HHHHHHHHHHcCCCeEEEcCccccCccchhHHHH
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAE---LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aE---I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~ 501 (636)
++.+.+..++..++|+|+++|+-.-.++++ ++.+.+++++.|.. +...+ ++=|+|-.+|-+
T Consensus 98 ~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~-~~~~S--A~~g~gi~~L~~ 161 (302)
T 2yv5_A 98 LLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYD-VLKVS--AKTGEGIDELVD 161 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCE-EEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCe-EEEEE--CCCCCCHHHHHh
Confidence 455666666779999999999987655553 66677778888885 44332 456677655543
No 228
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=61.71 E-value=20 Score=32.59 Aligned_cols=71 Identities=11% Similarity=0.033 Sum_probs=46.3
Q ss_pred hHHHHHHHHHhh---cCCcEEEEecCCCCCCH--HHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 437 VNLARHIANTKA---YGANVVVAVNMFATDSK--AELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 437 ~NL~kHIeNi~~---fGvPvVVAINrF~tDT~--aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++.+.++.+++ .++|+||++|+-.-..+ ...+.+++++++.|+..+..+. ++=|+|-.+|-+.+++.+.+
T Consensus 118 ~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~l~~~i~~ 193 (201)
T 2hup_A 118 LSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETS--AKDSSNVEEAFLRVATELIM 193 (201)
T ss_dssp HTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECB--TTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEe--CCCCCCHHHHHHHHHHHHHH
Confidence 344444444443 57999999999765332 1244567888888883244443 45678988988888877753
No 229
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=61.60 E-value=8.8 Score=39.18 Aligned_cols=42 Identities=29% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
++...|.+|+ +-|.||||++.-|+.+| ...|++..+.==.|+
T Consensus 77 ~~~~~I~i~G----~~G~GKSTl~~~L~~~l-~~~g~kV~vi~~Dp~ 118 (355)
T 3p32_A 77 GNAHRVGITG----VPGVGKSTAIEALGMHL-IERGHRVAVLAVDPS 118 (355)
T ss_dssp CCSEEEEEEC----CTTSSHHHHHHHHHHHH-HTTTCCEEEEEEC--
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCceEEEecCCC
Confidence 3455677777 37999999999999999 467988776555554
No 230
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=61.56 E-value=8.6 Score=35.58 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|.+++++| |.|.||||++.-++..+ ...|.+++
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~~~~~~-~~~~~~v~ 55 (247)
T 2dr3_A 21 PERNVVLLSG----GPGTGKTIFSQQFLWNG-LKMGEPGI 55 (247)
T ss_dssp ETTCEEEEEE----CTTSSHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHHH-HhcCCeEE
Confidence 5699999998 56999999998887766 34344433
No 231
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.19 E-value=4.5 Score=36.34 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=20.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
+.|++|.+++ |-|.||||+.--|+.
T Consensus 7 ~~g~~i~l~G----~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 7 LGGNILLLSG----HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTEEEEEEE----CTTSCHHHHHHHHHT
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHh
Confidence 4689999998 569999998766643
No 232
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=60.90 E-value=18 Score=32.05 Aligned_cols=69 Identities=9% Similarity=-0.072 Sum_probs=41.4
Q ss_pred HHHHHHHHHhh----cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKA----YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~----fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.+.++.+.+ .++|+|+++|+-.-..+.+.+.+.+... +.++. +. +.=++=|+|-.+|-+.+++.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 101 VTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-IQ--ACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp HHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-EE--ECBTTTTBTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcE-EE--EccCCCCcCHHHHHHHHHHHHH
Confidence 34444444433 5899999999976543222233333332 22332 33 3335678999999999998885
Q ss_pred c
Q 006673 509 N 509 (636)
Q Consensus 509 ~ 509 (636)
.
T Consensus 178 ~ 178 (187)
T 1zj6_A 178 I 178 (187)
T ss_dssp C
T ss_pred H
Confidence 4
No 233
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=60.49 E-value=5.3 Score=35.93 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+++|++++. .|.||||++--|++.|
T Consensus 11 ~~~~I~l~G~----~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGG----PGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3679999995 6999999998888877
No 234
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=60.45 E-value=26 Score=31.81 Aligned_cols=65 Identities=18% Similarity=0.267 Sum_probs=41.2
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 442 HIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tDT~aE--------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++.++++ ++|+||++|+-.-..+.+ .+...+++.+.+...+..+ =++=|+|-.+|-+.+++
T Consensus 119 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--SA~~g~gi~el~~~l~~ 196 (207)
T 2fv8_A 119 WVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC--SAKTKEGVREVFETATR 196 (207)
T ss_dssp HHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC--CTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe--eCCCCCCHHHHHHHHHH
Confidence 34445554 899999999976533222 1234566667776324333 34567888888888887
Q ss_pred Hhh
Q 006673 506 ACE 508 (636)
Q Consensus 506 a~e 508 (636)
.+-
T Consensus 197 ~i~ 199 (207)
T 2fv8_A 197 AAL 199 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 235
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=60.40 E-value=13 Score=32.85 Aligned_cols=58 Identities=10% Similarity=-0.047 Sum_probs=40.4
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDS-KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++|+||++|+-.-.. +...+...+++.+.++. +..+. ++-|+|-.+|-+.+++.+.+
T Consensus 113 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 171 (199)
T 2gf0_A 113 EDIPVMLVGNKCDETQREVDTREAQAVAQEWKCA-FMETS--AKMNYNVKELFQELLTLETR 171 (199)
T ss_dssp GGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHHCSS
T ss_pred CCCCEEEEEECccCCccccCHHHHHHHHHHhCCe-EEEEe--cCCCCCHHHHHHHHHHHHhh
Confidence 4899999999976432 12234456677778875 44333 56689999999999988754
No 236
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=60.37 E-value=23 Score=31.49 Aligned_cols=69 Identities=10% Similarity=-0.028 Sum_probs=41.2
Q ss_pred hHHHHHHHHHhh------cCCcEEEEecCCCCCCHHHHHHHHHHHH--H---cCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 437 VNLARHIANTKA------YGANVVVAVNMFATDSKAELNAVRNAAM--A---AGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 437 ~NL~kHIeNi~~------fGvPvVVAINrF~tDT~aEI~~v~e~c~--~---~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++.+.+..+.+ .++|+||++|+-.-..+.+.+.+.+++. + .++. +. ++=++=|+|-.+|-+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~ 183 (190)
T 2h57_A 107 VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWH-IC--ASDAIKGEGLQEGVDWLQD 183 (190)
T ss_dssp HHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEE-EE--ECBTTTTBTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceE-EE--EccCCCCcCHHHHHHHHHH
Confidence 344444444433 4899999999976544333444455543 1 2332 22 3336678898888888877
Q ss_pred Hhh
Q 006673 506 ACE 508 (636)
Q Consensus 506 a~e 508 (636)
.++
T Consensus 184 ~i~ 186 (190)
T 2h57_A 184 QIQ 186 (190)
T ss_dssp HC-
T ss_pred HHH
Confidence 764
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=60.31 E-value=8.7 Score=34.95 Aligned_cols=27 Identities=19% Similarity=0.476 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.++++++ |.|.||||+..-|+..+
T Consensus 21 ~~G~~~~i~G----~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTG----EPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 5689999987 56999999999998766
No 238
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=59.68 E-value=4.5 Score=42.20 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+..++|+|++ |.|.||||+++-|++.++
T Consensus 8 ~~~~~i~i~G----ptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 8 SLPKAIFLMG----PTASGKTALAIELRKILP 35 (316)
T ss_dssp CCCEEEEEEC----CTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEEC----CCccCHHHHHHHHHHhCC
Confidence 4567888887 569999999999998874
No 239
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=59.63 E-value=24 Score=34.53 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=46.6
Q ss_pred HHHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccc
Q 006673 439 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKG 495 (636)
Q Consensus 439 L~kHIeNi~~fGvPvV-VAIN---rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeG 495 (636)
.++.++.++..|+++| +.++ .|..|.-+.++.+.++|.+.|+. +++.-|...|+.+
T Consensus 33 ~~~~~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~-Vild~H~~~~~~~ 92 (294)
T 2whl_A 33 ASTAIPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMV-AVVEVHDATGRDS 92 (294)
T ss_dssp HHHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCC
T ss_pred hHHHHHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCc
Confidence 3567889999999999 7776 68888899999999999999996 8887777666554
No 240
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=59.58 E-value=7.6 Score=33.19 Aligned_cols=58 Identities=10% Similarity=-0.043 Sum_probs=38.8
Q ss_pred cCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
-++|++|++|+..-..+.+ .+...+++++.++. +..+. ++=|+|-.+|-+.+++.+++
T Consensus 108 ~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 108 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCA-FMETS--AKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCE-EEECB--TTTTBSHHHHHHHHHHTCCS
T ss_pred CCCCEEEEEEccccccccccCHHHHHHHHHHhCCe-EEEec--CCCCcCHHHHHHHHHHHHhh
Confidence 3799999999976432222 23455677777875 44333 56689999999988887653
No 241
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=59.46 E-value=29 Score=31.79 Aligned_cols=66 Identities=12% Similarity=0.089 Sum_probs=43.4
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCHHHH--------------HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 442 HIANTKAY--GANVVVAVNMFATDSKAEL--------------NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tDT~aEI--------------~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++.++++ ++|+|+++|+-.-..+.+. +..++++++.|...+..+. ++=|+|-.+|-+.+++
T Consensus 128 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~el~~~l~~ 205 (214)
T 2j1l_A 128 WYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS--ARLHDNVHAVFQEAAE 205 (214)
T ss_dssp HHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB--TTTTBSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec--CCCCCCHHHHHHHHHH
Confidence 34444443 8999999999765443322 3346778888873244333 5678898998888887
Q ss_pred Hhhc
Q 006673 506 ACEN 509 (636)
Q Consensus 506 a~e~ 509 (636)
.+.+
T Consensus 206 ~~~~ 209 (214)
T 2j1l_A 206 VALS 209 (214)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 242
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=59.44 E-value=26 Score=34.94 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--CCeEEEcCccccCccchhHHHH
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~G--v~~~avs~~wa~GGeGa~eLA~ 501 (636)
++.+.+..++..++|+|+++|+-.-..+.+++.+.++++..+ .. +..+. ++=|+|-.+|-+
T Consensus 103 ~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~-~~~~S--Aktg~gv~~lf~ 165 (301)
T 1u0l_A 103 IIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYP-IVKTS--AKTGMGIEELKE 165 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCc-EEEEE--CCCCcCHHHHHH
Confidence 555666666678999999999987666666666677777665 54 43333 556677555543
No 243
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=59.40 E-value=15 Score=33.59 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=40.2
Q ss_pred HHHHHHhhc--CCcEEEEecCCCCCCHHH--------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHH
Q 006673 441 RHIANTKAY--GANVVVAVNMFATDSKAE--------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 441 kHIeNi~~f--GvPvVVAINrF~tDT~aE--------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
..++.++++ ++|+||++|+-.-..+.+ .+...+++++.|...+..+. ++=|+|-.+|-+.++
T Consensus 123 ~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--A~~g~gi~~l~~~l~ 200 (204)
T 4gzl_A 123 KWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAI 200 (204)
T ss_dssp THHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEee--CCCCCCHHHHHHHHH
Confidence 344555554 899999999965422222 23455677777764343333 466888888777776
Q ss_pred HH
Q 006673 505 RA 506 (636)
Q Consensus 505 ~a 506 (636)
+.
T Consensus 201 ~~ 202 (204)
T 4gzl_A 201 RA 202 (204)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 244
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=59.37 E-value=6.8 Score=36.39 Aligned_cols=28 Identities=36% Similarity=0.439 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|.+|.|.+ |.|.||||++--|+.-+.
T Consensus 20 ~~g~~v~I~G----~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSG----APGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEEC----CTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 5688998888 679999999988877773
No 245
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=59.34 E-value=6.3 Score=36.06 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..+.+|++++. -|.||||++--|++.|
T Consensus 18 ~~~~~I~l~G~----~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 18 GSHMRVLLLGP----PGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CSCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 45789999996 6999999998888777
No 246
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=59.24 E-value=22 Score=30.89 Aligned_cols=66 Identities=14% Similarity=0.083 Sum_probs=41.9
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCH-HH-------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 442 HIANTKAY--GANVVVAVNMFATDSK-AE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tDT~-aE-------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++.++++ ++|+|+++|+..-..+ .. .+...+++++.|...+..+. ++=|+|-.+|-+.+++
T Consensus 99 ~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~g~gi~~l~~~l~~ 176 (186)
T 1mh1_A 99 WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAIR 176 (186)
T ss_dssp HHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec--CCCccCHHHHHHHHHH
Confidence 34444444 8999999999753221 11 23345677777763244333 4567888899888888
Q ss_pred Hhhc
Q 006673 506 ACEN 509 (636)
Q Consensus 506 a~e~ 509 (636)
.+-+
T Consensus 177 ~~~~ 180 (186)
T 1mh1_A 177 AVLC 180 (186)
T ss_dssp HHSC
T ss_pred HHhc
Confidence 7754
No 247
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=58.99 E-value=26 Score=38.91 Aligned_cols=96 Identities=15% Similarity=0.240 Sum_probs=55.2
Q ss_pred chhccccccccCCCC-cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCc-EEE
Q 006673 378 AEKFMNIKCRYSGLT-PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGAN-VVV 455 (636)
Q Consensus 378 aEKF~dIkcr~~gl~-P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvP-vVV 455 (636)
-|+|. +-...++. .|++|+|.-+..=.+..+... ......|+..++..|+| +||
T Consensus 255 ~e~f~--~~~~~~~~~aD~~llVVDa~~g~~e~~~~~----------------------~~qt~e~l~~~~~lgi~~iIV 310 (611)
T 3izq_1 255 HRDFV--PNAIMGISQADMAILCVDCSTNAFESGFDL----------------------DGQTKEHMLLASSLGIHNLII 310 (611)
T ss_dssp SSCHH--HHHTTTSSCCSEEEEEEECSHHHHHTTCCT----------------------TSHHHHHHHHHHTTTCCEEEE
T ss_pred CcccH--HHHHHHHhhcCceEEEEECCCCcccccchh----------------------hhHHHHHHHHHHHcCCCeEEE
Confidence 35664 34444544 899999986653222222211 12567899999999987 999
Q ss_pred EecCCCCCC--HHHHH----HHHHHHHHcCCC----eEEEcCccccCccchhHH
Q 006673 456 AVNMFATDS--KAELN----AVRNAAMAAGAF----DAVVCSHHAHGGKGAVDL 499 (636)
Q Consensus 456 AINrF~tDT--~aEI~----~v~e~c~~~Gv~----~~avs~~wa~GGeGa~eL 499 (636)
++|+..--. ++.++ .+.+++.+.|.. .++.+.. .-|+|-.+|
T Consensus 311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA--~tG~gI~el 362 (611)
T 3izq_1 311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISG--FSGEGVYKI 362 (611)
T ss_dssp EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCT--TTCTTTSSC
T ss_pred EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeec--ccCCCcccc
Confidence 999986543 33333 344455555541 2444443 445665443
No 248
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=58.95 E-value=5.1 Score=38.67 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=22.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.+++|+++|. -|.||||++--|++.|
T Consensus 30 ~~~~~i~l~G~----~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 30 KQPIAILLGGQ----SGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SSCEEEEEESC----GGGTTHHHHHHHHHHT
T ss_pred cCCeEEEEECC----CCCCHHHHHHHHHHhc
Confidence 45789999994 7999999998887776
No 249
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=58.76 E-value=8.7 Score=32.76 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=36.7
Q ss_pred hcCCcEEEEecCCCCCCH---H--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 448 AYGANVVVAVNMFATDSK---A--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~---a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
..++|+++++|+..-..+ . ..+..++++++.|+. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 106 ~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 106 SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLL-FFETS--AKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCE-EEECC--TTTCTTHHHHHHHHHTTS
T ss_pred CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHH
Confidence 358999999999754222 1 123456677778875 44443 345788888777776544
No 250
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=58.52 E-value=13 Score=34.22 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=38.8
Q ss_pred hhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 447 KAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 447 ~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
...++|+||+.|+-.-..+.+ .+.+++++++.++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 128 ~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~S--a~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 128 ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMY-YLETS--AKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCC-EEECC--TTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 345899999999975432211 23456777778886 44443 4567888888777776654
No 251
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=58.50 E-value=23 Score=35.04 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=39.3
Q ss_pred HHHHhHHHHHHHHHhhcCCcEEEEecCCCC-CCHHHH-------HHHHHHHHHcCCCeEEEcCccc
Q 006673 433 EAGCVNLARHIANTKAYGANVVVAVNMFAT-DSKAEL-------NAVRNAAMAAGAFDAVVCSHHA 490 (636)
Q Consensus 433 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~t-DT~aEI-------~~v~e~c~~~Gv~~~avs~~wa 490 (636)
++....+++.|+..+.+|.+.||. --++. .+++++ ..+.+.|++.|+. +++-+|..
T Consensus 110 ~~~~~~~~~~i~~A~~lG~~~v~~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 173 (305)
T 3obe_A 110 PKFDEFWKKATDIHAELGVSCMVQ-PSLPRIENEDDAKVVSEIFNRAGEITKKAGIL-WGYHNHSN 173 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTCSEEEE-CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCE-EEEECCSG
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEe-CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCE-EEEecCcc
Confidence 445678999999999999999995 33322 355554 3445566788996 77776653
No 252
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=58.20 E-value=7.2 Score=35.84 Aligned_cols=70 Identities=9% Similarity=-0.115 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 437 VNLARHIANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 437 ~NL~kHIeNi~~f--GvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++...++.+.++ ++|+|+++|+-.-......+...+++++.++. +..+. ++=|+|-.+|-+.+.+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~S--a~~~~gi~~l~~~l~~~l~~ 175 (221)
T 3gj0_A 104 KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDIS--AKSNYNFEKPFLWLARKLIG 175 (221)
T ss_dssp HTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCE-EEECB--GGGTBTTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCE-EEEEe--CCCCCCHHHHHHHHHHHHHh
Confidence 3444455555543 89999999997654333333455677778885 44433 56688999988888887754
No 253
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=58.10 E-value=20 Score=35.69 Aligned_cols=81 Identities=9% Similarity=0.077 Sum_probs=48.5
Q ss_pred HHHHHHHhhc--CCcEEEEecCCCCCCHHHH--------HHHHHHHHHcCC--CeEEEcCccccCccchhHHHHHHHHHh
Q 006673 440 ARHIANTKAY--GANVVVAVNMFATDSKAEL--------NAVRNAAMAAGA--FDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 440 ~kHIeNi~~f--GvPvVVAINrF~tDT~aEI--------~~v~e~c~~~Gv--~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.+.+..++++ ++|+||++|+-.-..+++. +.+.++|++.|+ ..+..+..|. +|..++-..++..+
T Consensus 103 ~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~---~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 103 AKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD---ESLYKAWSQIVCSL 179 (307)
T ss_dssp HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS---SHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC---ChHHHHHHHHHHHH
Confidence 3345555543 8999999999876553333 566788888883 3477777777 34444444443321
Q ss_pred hcCCCCCcccCCCCCCHHHHHHHHHH
Q 006673 508 ENVTQPLKFLYPLDVSIKEKIDTIAR 533 (636)
Q Consensus 508 e~~~s~fk~LY~~~~~L~eKIetIA~ 533 (636)
.+.-..+++.++.++.
T Consensus 180 ----------i~~~~~le~~l~~~~~ 195 (307)
T 3r7w_A 180 ----------IPNMSNHQSNLKKFKE 195 (307)
T ss_dssp ----------CSCHHHHHHHHHHHHH
T ss_pred ----------cCCHHHHHHHHHHHHh
Confidence 2222345666666665
No 254
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=58.02 E-value=47 Score=33.44 Aligned_cols=143 Identities=17% Similarity=0.255 Sum_probs=83.4
Q ss_pred CCCCCccCCCCCcc------cccccCHHHHHHHH--hHHHHHHHHHhh--cCCcEEEE--ecC-CCCCCHHHHHHHHHHH
Q 006673 409 GGGPQVVAGKPLDH------AYLNENVALVEAGC--VNLARHIANTKA--YGANVVVA--VNM-FATDSKAELNAVRNAA 475 (636)
Q Consensus 409 GG~~~~~~g~pL~~------~l~~eNleaL~~G~--~NL~kHIeNi~~--fGvPvVVA--INr-F~tDT~aEI~~v~e~c 475 (636)
+|+.-..+|-|.-+ ...+-+..||+.|+ .++...|+.+|+ ..+|+|+- .|- |... ++...+.|
T Consensus 44 ~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g----~e~f~~~~ 119 (267)
T 3vnd_A 44 NGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANG----IDEFYTKA 119 (267)
T ss_dssp TTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHC----HHHHHHHH
T ss_pred cCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhh----HHHHHHHH
Confidence 56666666644322 23344567888884 455666777776 47897764 342 2222 24455678
Q ss_pred HHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-----HhCC--C---cee--eC
Q 006673 476 MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-----SYGA--S---GVE--YS 543 (636)
Q Consensus 476 ~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-----IYGA--~---~V~--~S 543 (636)
+++|+..+++.+.=- +=++.+++.+.+..-..-++-..+.|. |.|+.|++ ||-. . |.. ++
T Consensus 120 ~~aGvdgvii~Dlp~-------ee~~~~~~~~~~~gl~~i~liaP~t~~-eri~~i~~~~~gfvY~vS~~GvTG~~~~~~ 191 (267)
T 3vnd_A 120 QAAGVDSVLIADVPV-------EESAPFSKAAKAHGIAPIFIAPPNADA-DTLKMVSEQGEGYTYLLSRAGVTGTESKAG 191 (267)
T ss_dssp HHHTCCEEEETTSCG-------GGCHHHHHHHHHTTCEEECEECTTCCH-HHHHHHHHHCCSCEEESCCCCCC-------
T ss_pred HHcCCCEEEeCCCCH-------hhHHHHHHHHHHcCCeEEEEECCCCCH-HHHHHHHHhCCCcEEEEecCCCCCCccCCc
Confidence 889998666654322 225566666764222344555656564 57888776 4542 2 222 45
Q ss_pred HHHHHHHHHHHhCCCCCCCeeE
Q 006673 544 EEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 544 ~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+...+.++++.+. -++|||+
T Consensus 192 ~~~~~~v~~vr~~--~~~pv~v 211 (267)
T 3vnd_A 192 EPIENILTQLAEF--NAPPPLL 211 (267)
T ss_dssp -CHHHHHHHHHTT--TCCCEEE
T ss_pred HHHHHHHHHHHHh--cCCCEEE
Confidence 5577888888886 3799998
No 255
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=58.01 E-value=5.9 Score=36.30 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..++|+++|. -|.||||++--|++.|
T Consensus 17 ~~~~I~l~G~----~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 17 FPGSIVVMGV----SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CSSCEEEECS----TTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 3678999985 6999999988887766
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=57.81 E-value=7.2 Score=40.54 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=28.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|++|+|++ |.|.||||++.-|+..+ .+.|.+++
T Consensus 61 ~~G~ii~I~G----~pGsGKTtLal~la~~~-~~~g~~vl 95 (356)
T 1u94_A 61 PMGRIVEIYG----PESSGKTTLTLQVIAAA-QREGKTCA 95 (356)
T ss_dssp ETTSEEEEEC----STTSSHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHH-HHCCCeEE
Confidence 5799999998 78999999999998887 35565544
No 257
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=57.69 E-value=16 Score=32.49 Aligned_cols=73 Identities=11% Similarity=0.031 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHH-----HHHHHHHHcCCCeE-EEcCccccCc-cchhHHHHHHHHHh
Q 006673 437 VNLARHIANTKA--YGANVVVAVNMFATDSKAELN-----AVRNAAMAAGAFDA-VVCSHHAHGG-KGAVDLGIAVQRAC 507 (636)
Q Consensus 437 ~NL~kHIeNi~~--fGvPvVVAINrF~tDT~aEI~-----~v~e~c~~~Gv~~~-avs~~wa~GG-eGa~eLA~aVv~a~ 507 (636)
.++...++.++. .++|+|++.|+..-..+.++. ...+++++.|.... ..-+.=++=| +|-.+|.+.+++.+
T Consensus 97 ~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 97 DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176 (184)
T ss_dssp HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHH
Confidence 355555555544 379999999998766665543 23455555676410 0112224455 48899999998877
Q ss_pred hc
Q 006673 508 EN 509 (636)
Q Consensus 508 e~ 509 (636)
.+
T Consensus 177 ~~ 178 (184)
T 2zej_A 177 LN 178 (184)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 258
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=57.26 E-value=13 Score=33.62 Aligned_cols=69 Identities=12% Similarity=-0.015 Sum_probs=44.6
Q ss_pred HHHHHHHHHhh----cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 438 NLARHIANTKA----YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 438 NL~kHIeNi~~----fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
++...++.+.+ .++|+||++|+..-..+. ..+..++++++.|+. +..+ =++=|+|-.+|-+.+++.+.+
T Consensus 113 ~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~~--Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 113 VIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGAT-FMES--SARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp HHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEC--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCe-EEEE--eCCCCCCHHHHHHHHHHHHHh
Confidence 44444444444 489999999998743222 223456778888885 4433 355678888888888887754
No 259
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=56.94 E-value=5.3 Score=38.87 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=19.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++|+|++. .|.||||++.-|++.+
T Consensus 2 ~li~I~G~----~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGP----TCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred eEEEEECC----CCcCHHHHHHHHHhcC
Confidence 46778774 6999999998887766
No 260
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=56.92 E-value=4.1 Score=42.45 Aligned_cols=125 Identities=7% Similarity=-0.162 Sum_probs=71.3
Q ss_pred cccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH--HHHHHHcCCC---------eEEEcCccccCc
Q 006673 425 LNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAV--RNAAMAAGAF---------DAVVCSHHAHGG 493 (636)
Q Consensus 425 ~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v--~e~c~~~Gv~---------~~avs~~wa~GG 493 (636)
..+-++.|++++..+.+.+..++.-++ ..+=.++++-..++.+... .+-|.. +-. -+-..+.|...|
T Consensus 186 ~~eyl~~vr~~Y~~l~~~~~~l~~~~~-~~~~w~~l~~~~~~~~~~~~~~~~~~~-~~~p~~~~tlf~~~k~~~~~~~~~ 263 (334)
T 1p6x_A 186 DITLIATLRNVYFMLVNTCHFLRSGRV-WRDGWGELPTSCGAYKHRATQMDAFQE-RVSPELGDTLFALFKTQELLDDRG 263 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTCC-TTTTTTTSCCCSHHHHHHHTSTTCCCC-CSSCCGGGSGGGGGCSGGGBCTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHhhccCCc-eeechhhcCCCChhhhhhhcccccccC-CCCCchHhHHHHHHCchhhcCCCC
Confidence 346688899999999888888764220 0011123333344444433 111211 110 011236788888
Q ss_pred cchhHHHHHHHHHhhcC-C-CCCcccCCCCCCHHHHHHHHHH-HhCCCceeeCHHHHHHHHHH
Q 006673 494 KGAVDLGIAVQRACENV-T-QPLKFLYPLDVSIKEKIDTIAR-SYGASGVEYSEEAEKQIEMY 553 (636)
Q Consensus 494 eGa~eLA~aVv~a~e~~-~-s~fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S~~A~kqLk~i 553 (636)
..-.-+|...-.+++.- + +-|..-| +.+.++=...+.. .=+-.-...+..+..+|++.
T Consensus 264 ~~~~~~~~~l~~l~~~l~~~~~~~~d~--~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (334)
T 1p6x_A 264 VILEVHAWALDALMLKLRNLNVFSADL--SGTPRQCAAVVESLLPLMSSTLSDFDSASALERA 324 (334)
T ss_dssp CBCHHHHHHHHHHHHHHTTEEEEEEEC--CSCHHHHHHHHHTTGGGSCEEEEEHHHHHHHHHH
T ss_pred ChhhhHHHHHHHHHHHhccCeEEEEeC--CCCHHHHHHHHHHhCcCCccccCChhHHHHHHHH
Confidence 88766676655555421 1 1244444 4488888888888 77777777788777777653
No 261
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=56.66 E-value=6.5 Score=35.33 Aligned_cols=24 Identities=33% Similarity=0.594 Sum_probs=19.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+|.++|+ -|.||||++--|++.|+
T Consensus 2 ~I~i~G~----~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGT----VGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECC----TTSCHHHHHHHHHHHHC
T ss_pred EEEEECC----CccCHHHHHHHHHHhcC
Confidence 5777775 69999999999888774
No 262
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=56.59 E-value=17 Score=31.81 Aligned_cols=66 Identities=14% Similarity=0.004 Sum_probs=43.5
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCe----EEEcCccccCccchhHHHHHHHHHhhc
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFD----AVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~----~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.+.++..++|+++++|+-.-..+. -+.+.+++++.|... ..+-+.=++-|+|-.+|-+.+++.+.+
T Consensus 115 ~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 115 YQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE 184 (190)
T ss_dssp HHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcch
Confidence 344556899999999997654433 334567777777641 011223356788988888888887754
No 263
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=56.58 E-value=37 Score=29.98 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=35.7
Q ss_pred CCcEEEEecCCCCCCH---HHHHHHHHH---HHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 450 GANVVVAVNMFATDSK---AELNAVRNA---AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 450 GvPvVVAINrF~tDT~---aEI~~v~e~---c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
++|+||++|+..-..+ +|+...... +++.++. +.. .=++=|+|-.+|-+.+++.+.+
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~Sa~~g~gv~~l~~~l~~~~~~ 189 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFV-IFA--SNGLKGTGVHEGFSWLQETASR 189 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEE-EEE--CBTTTTBTHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeE-EEE--eeCCCccCHHHHHHHHHHHHHH
Confidence 8999999999775444 444322211 1334443 333 3356688988888888877653
No 264
>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A
Probab=56.41 E-value=37 Score=33.07 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=62.2
Q ss_pred ccccC-HHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCC-CCHHHHHHHHHHHHH-----cCCCeEEEcCccccCcc-
Q 006673 424 YLNEN-VALVEAGCVNLARHIANTKAYGANVVVAV-NMFAT-DSKAELNAVRNAAMA-----AGAFDAVVCSHHAHGGK- 494 (636)
Q Consensus 424 l~~eN-leaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t-DT~aEI~~v~e~c~~-----~Gv~~~avs~~wa~GGe- 494 (636)
+..+| .+..++.+..++++|+-.+.+|.+.||.- ..... +.++.++.+.+..++ .|+. +++-++...+..
T Consensus 80 l~s~d~~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~-l~lEn~~~~~~~~ 158 (303)
T 3aal_A 80 IGNTTNLDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQ-IALETMAGKGSEC 158 (303)
T ss_dssp TTCSSCHHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCE-EEEECCCCCTTEE
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCE-EEEecCCCCCCcc
Confidence 44567 78889999999999999999999999862 22222 456666666555443 3775 777777544432
Q ss_pred c-hhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 495 G-AVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 495 G-a~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
+ ..+-+..+++.++. +.++.+++|.
T Consensus 159 ~~t~~~~~~li~~v~~-~~~vg~~lD~ 184 (303)
T 3aal_A 159 GRTFEELAYIIDGVAY-NDKLSVCFDT 184 (303)
T ss_dssp CSSHHHHHHHHHHCTT-GGGEEEEEEH
T ss_pred CCCHHHHHHHHHhcCC-CCCEEEEEEc
Confidence 2 44555567776642 1347766653
No 265
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=55.89 E-value=27 Score=36.15 Aligned_cols=43 Identities=21% Similarity=0.189 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCCC-CHHHHH----HHHHHHHHcCC
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFATD-SKAELN----AVRNAAMAAGA 480 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~tD-T~aEI~----~v~e~c~~~Gv 480 (636)
...+|++.++.+|+| +||++|+-.-. .++.++ .+++++++.|.
T Consensus 115 qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~ 163 (405)
T 2c78_A 115 QTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF 163 (405)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence 456788888889999 89999998654 333333 45566777663
No 266
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=55.48 E-value=5.8 Score=35.58 Aligned_cols=25 Identities=44% Similarity=0.460 Sum_probs=20.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|++|+ +.|.||||++--|++.|+
T Consensus 3 ~~I~l~G----~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVG----LPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEEC----STTSSHHHHHHHHHHHHT
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHcC
Confidence 4688887 469999999998888773
No 267
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.37 E-value=6.9 Score=36.41 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=22.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.|+.|+++++ -|.||||.+--|++.|
T Consensus 3 ~~~~I~l~G~----~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGP----PGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 4789999996 4999999998888877
No 268
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=55.37 E-value=15 Score=32.28 Aligned_cols=58 Identities=14% Similarity=-0.021 Sum_probs=36.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++|+|+++|+-.-..+.+.+.+.+... ..++. + -+.=++-|+|-.+|-+.+++.+.+
T Consensus 118 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~Sa~~~~gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 118 AGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWR-I--QGCSAVTGEDLLPGIDWLLDDISS 180 (186)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-E--EECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceE-E--EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 5899999999976544333333333322 12332 2 233356689999999998888754
No 269
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=55.22 E-value=8.8 Score=42.44 Aligned_cols=27 Identities=37% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.++++++|| |.|.|||||...+...|.
T Consensus 163 ~~~~~vi~G----~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 163 TRRISVISG----GPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp TBSEEEEEC----CTTSTHHHHHHHHHHHHH
T ss_pred cCCCEEEEe----CCCCCHHHHHHHHHHHHH
Confidence 378999999 689999999999999993
No 270
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=55.21 E-value=5 Score=41.95 Aligned_cols=26 Identities=35% Similarity=0.475 Sum_probs=22.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+++|+|+| |.|.||||+++.|++.++
T Consensus 3 ~~~i~i~G----ptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVG----PTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEEC----CTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEEC----CCcCCHHHHHHHHHHhCc
Confidence 56888887 569999999999998884
No 271
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=55.17 E-value=14 Score=37.16 Aligned_cols=143 Identities=14% Similarity=0.197 Sum_probs=86.5
Q ss_pred CCCCCccCCCCCcc------cccccCHHHHHHHHhHHHHHHHHHhhcC--CcEEE--EecCCCCCCHHHHHHHHHHHHHc
Q 006673 409 GGGPQVVAGKPLDH------AYLNENVALVEAGCVNLARHIANTKAYG--ANVVV--AVNMFATDSKAELNAVRNAAMAA 478 (636)
Q Consensus 409 GG~~~~~~g~pL~~------~l~~eNleaL~~G~~NL~kHIeNi~~fG--vPvVV--AINrF~tDT~aEI~~v~e~c~~~ 478 (636)
+|++-.++|-|--+ -..+-+..||+.|+ ++.+-.+-++++- +|+|+ -.|-+- .-=++...+.|+++
T Consensus 40 ~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~-~~~~~~~~~~~~r~~~Pivlm~Y~N~i~---~~G~e~F~~~~~~a 115 (252)
T 3tha_A 40 SPIDILELGVAYSDPIADGEIIADAAKIALDQGV-DIHSVFELLARIKTKKALVFMVYYNLIF---SYGLEKFVKKAKSL 115 (252)
T ss_dssp SSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTC-CHHHHHHHHHHCCCSSEEEEECCHHHHH---HHCHHHHHHHHHHT
T ss_pred cCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCC-CHHHHHHHHHHHhcCCCEEEEeccCHHH---HhhHHHHHHHHHHc
Confidence 45555555544322 34456788999997 6777777777653 68877 556221 11245677888999
Q ss_pred CCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHH-H----h-----CCCcee--eCHHH
Q 006673 479 GAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLDVSIKEKIDTIAR-S----Y-----GASGVE--YSEEA 546 (636)
Q Consensus 479 Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~-I----Y-----GA~~V~--~S~~A 546 (636)
|+..+++-+.=- |=++.+.+.+++..-.+-+|-..+.| .|.|+.|++ . | |-.|.. +++..
T Consensus 116 GvdG~IipDLP~-------eE~~~~~~~~~~~Gl~~I~lvaP~t~-~eRi~~ia~~a~gFiY~Vs~~GvTG~~~~~~~~~ 187 (252)
T 3tha_A 116 GICALIVPELSF-------EESDDLIKECERYNIALITLVSVTTP-KERVKKLVKHAKGFIYLLASIGITGTKSVEEAIL 187 (252)
T ss_dssp TEEEEECTTCCG-------GGCHHHHHHHHHTTCEECEEEETTSC-HHHHHHHHTTCCSCEEEECCSCSSSCSHHHHHHH
T ss_pred CCCEEEeCCCCH-------HHHHHHHHHHHHcCCeEEEEeCCCCc-HHHHHHHHHhCCCeEEEEecCCCCCcccCCCHHH
Confidence 998777776522 22556666665422223344444444 588888887 3 3 222332 33445
Q ss_pred HHHHHHHHhCCCCCCCeeE
Q 006673 547 EKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 547 ~kqLk~ie~lG~~~LPVCm 565 (636)
.+-++++++. .++|||+
T Consensus 188 ~~~v~~vr~~--~~~Pv~v 204 (252)
T 3tha_A 188 QDKVKEIRSF--TNLPIFV 204 (252)
T ss_dssp HHHHHHHHTT--CCSCEEE
T ss_pred HHHHHHHHHh--cCCcEEE
Confidence 6778888877 4789998
No 272
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=54.74 E-value=36 Score=32.49 Aligned_cols=122 Identities=12% Similarity=0.130 Sum_probs=66.8
Q ss_pred HHHHHHHHh--HHHHHHHHHhh-cCCcEEEEe--c-CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 006673 429 VALVEAGCV--NLARHIANTKA-YGANVVVAV--N-MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (636)
Q Consensus 429 leaL~~G~~--NL~kHIeNi~~-fGvPvVVAI--N-rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~a 502 (636)
..||+.|.. +....|+.+++ +++|+++-. | .|..+.++.+ +.|.+.|+..+++. ... ..+ .+.
T Consensus 56 ~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~----~~~~~~Gad~v~~~-~~~-----~~~-~~~ 124 (248)
T 1geq_A 56 YRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFL----AEAKASGVDGILVV-DLP-----VFH-AKE 124 (248)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHH----HHHHHHTCCEEEET-TCC-----GGG-HHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHH----HHHHHCCCCEEEEC-CCC-----hhh-HHH
Confidence 456666651 23677888877 689988876 6 4555545544 45667899744443 211 112 455
Q ss_pred HHHHhhcCCCCCcccCCCCCCHHHHHHHHHHHhCCCce--------------eeCHHHHHHHHHHHhCCCCCCCeeEe
Q 006673 503 VQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGV--------------EYSEEAEKQIEMYTGQGFSGLPICMA 566 (636)
Q Consensus 503 Vv~a~e~~~s~fk~LY~~~~~L~eKIetIA~IYGA~~V--------------~~S~~A~kqLk~ie~lG~~~LPVCmA 566 (636)
+++.+.+....+-+..+.. +..|.++.++. +++++ .+.+...+.++++.+.- ++||+..
T Consensus 125 ~~~~~~~~g~~~~~~i~~~-t~~e~~~~~~~--~~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~--~~pi~~~ 197 (248)
T 1geq_A 125 FTEIAREEGIKTVFLAAPN-TPDERLKVIDD--MTTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC--RNKVAVG 197 (248)
T ss_dssp HHHHHHHHTCEEEEEECTT-CCHHHHHHHHH--HCSSEEEEECCC-------CCCHHHHHHHHHHHHHC--SSCEEEE
T ss_pred HHHHHHHhCCCeEEEECCC-CHHHHHHHHHh--cCCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhc--CCCEEEE
Confidence 6666653222233334333 33455555543 12211 14466677788887752 5888763
No 273
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=54.57 E-value=68 Score=30.04 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=63.0
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEec-CCCC---CCHH-------HHHHHHHHHHHcCCCeEEEcCcccc---
Q 006673 426 NENVALVEAGCVNLARHIANTKAYGANVVVAVN-MFAT---DSKA-------ELNAVRNAAMAAGAFDAVVCSHHAH--- 491 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAIN-rF~t---DT~a-------EI~~v~e~c~~~Gv~~~avs~~wa~--- 491 (636)
.+|.+.-++.+..+++.|+..+.+|.+.||.-- .++. ++++ -++.+.+.|++.|+. +++-++...
T Consensus 72 ~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~~~~~~~~ 150 (275)
T 3qc0_A 72 APDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEPLHPMYAA 150 (275)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECCCCGGGTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeECCCcccC
Confidence 456677788899999999999999999998753 3442 3333 244555667788997 777764221
Q ss_pred Cc--cchhHHHHHHHHHhhcCCCCCcccCCC-----CCCHHHHHHHHH
Q 006673 492 GG--KGAVDLGIAVQRACENVTQPLKFLYPL-----DVSIKEKIDTIA 532 (636)
Q Consensus 492 GG--eGa~eLA~aVv~a~e~~~s~fk~LY~~-----~~~L~eKIetIA 532 (636)
.+ -...+-+.++++.+. + ++.+++|. +.++.+-|+++.
T Consensus 151 ~~~~~~~~~~~~~l~~~~~--~-~vg~~~D~~h~~~~~d~~~~l~~~~ 195 (275)
T 3qc0_A 151 DRACVNTLGQALDICETLG--P-GVGVAIDVYHVWWDPDLANQIARAG 195 (275)
T ss_dssp TTBSCCCHHHHHHHHHHHC--T-TEEEEEEHHHHTTCTTHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHhC--c-ccEEEEEhhhheeCCCHHHHHHHcC
Confidence 11 123344445666553 3 56655542 234555555554
No 274
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=54.03 E-value=6.1 Score=36.98 Aligned_cols=27 Identities=19% Similarity=0.199 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+|..|+++++ -|.||||.+--|++.|
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 3 SKKHNLILIGA----PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GGCCEEEEEEC----TTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECC----CCCCHHHHHHHHHHHh
Confidence 34778999986 4999999998888777
No 275
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=53.89 E-value=63 Score=30.80 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=54.4
Q ss_pred HHHHHHHhHHHHHHHHHhhcCCcEEEEe-------cCCCC-------C-CHHHH-------HHHHHHHHHcCCCeEEEcC
Q 006673 430 ALVEAGCVNLARHIANTKAYGANVVVAV-------NMFAT-------D-SKAEL-------NAVRNAAMAAGAFDAVVCS 487 (636)
Q Consensus 430 eaL~~G~~NL~kHIeNi~~fGvPvVVAI-------NrF~t-------D-T~aEI-------~~v~e~c~~~Gv~~~avs~ 487 (636)
+..++.+..+++.|+..+.+|.+.||.. -.+.. . +++.+ ..+.+.|++.|+. +++-+
T Consensus 83 ~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~ 161 (301)
T 3cny_A 83 DGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLK-VAYHH 161 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCE-EEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCE-EEEec
Confidence 3456788899999999999999998875 12211 1 44443 3455566778996 88877
Q ss_pred ccccCccchhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 488 HHAHGGKGAVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 488 ~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
++..-.. ..+-+.++++.+. +.++.++||.
T Consensus 162 ~~~~~~~-~~~~~~~l~~~~~--~~~vg~~~D~ 191 (301)
T 3cny_A 162 HMGTGIQ-TKEETDRLMANTD--PKLVGLLYDT 191 (301)
T ss_dssp CTTSSSC-SHHHHHHHHHTSC--TTTCEEEEEH
T ss_pred CCCcccC-CHHHHHHHHHhCC--ccceeEEech
Confidence 7532222 2333445555443 2347777764
No 276
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=53.87 E-value=17 Score=34.25 Aligned_cols=60 Identities=10% Similarity=0.031 Sum_probs=37.6
Q ss_pred cCCcEEEEecCCCCCCHHHHH--------HHHHHHHHcCCCeEEEcCcccc---CccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAELN--------AVRNAAMAAGAFDAVVCSHHAH---GGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~--------~v~e~c~~~Gv~~~avs~~wa~---GGeGa~eLA~aVv~a~e~ 509 (636)
.+.|+||++|+..--.+++++ .+++++++.|.+ +...+.-+. -++|-.+|-+.+.+.+.+
T Consensus 144 ~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 144 ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR-YCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HGGGEEEEEECGGGC------------CHHHHHHHHHHSSS-EEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE-EEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 456999999997654444444 567777777876 444444333 236788888888888764
No 277
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=53.77 E-value=7 Score=36.42 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.+++|+++|. -|.||||.+--|++.|+
T Consensus 3 ~~~~~I~l~G~----~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 3 ADPLKVMISGA----PASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCSCCEEEEES----TTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 34678999995 69999999999988873
No 278
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=53.75 E-value=10 Score=39.85 Aligned_cols=37 Identities=22% Similarity=0.122 Sum_probs=31.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
-++|-|+||+ |.-.-||||||..|.++| ++.|.++..
T Consensus 150 v~~k~i~v~G---TD~~VGK~~ts~~L~~~l-~~~G~~a~~ 186 (349)
T 2obn_A 150 LPCRRVLTVG---TDMAIGKMSTSLELHWAA-KLRGWRSKF 186 (349)
T ss_dssp CSSEEEEEEE---SSSSSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEcC---CCccccceeHHHHHHHHH-HhcCCcEEE
Confidence 3578899998 456699999999999999 588999875
No 279
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=53.54 E-value=8.1 Score=33.89 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=39.1
Q ss_pred HHHHhhcCCcEEEEecCCCCCCHHHHH-HHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 443 IANTKAYGANVVVAVNMFATDSKAELN-AVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 443 IeNi~~fGvPvVVAINrF~tDT~aEI~-~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
++.+++.++|+|++.|+-.-..+.++. ...+++++.|.. +..+. ++=|+|-.+|-+.+.+.+
T Consensus 101 ~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 101 TLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVK-VVPLS--AAKKMGIEELKKAISIAV 163 (165)
T ss_dssp HHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSC-EEECB--GGGTBSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCC-EEEEE--cCCCCCHHHHHHHHHHHh
Confidence 444556799999999985321111110 145667777876 44333 566889888888877665
No 280
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=53.33 E-value=6.7 Score=41.37 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=27.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.++|+| |+|.||||+..-+...|. ..|++.+++
T Consensus 47 ~~li~G----~aGTGKT~ll~~~~~~l~-~~~~~~il~ 79 (459)
T 3upu_A 47 HVTING----PAGTGATTLTKFIIEALI-STGETGIIL 79 (459)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCCEEE
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHHH-hcCCceEEE
Confidence 899998 699999999999999994 667644443
No 281
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=53.15 E-value=54 Score=30.77 Aligned_cols=80 Identities=10% Similarity=0.040 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhhcCCcEEEEecCCCC-CC-----HHHHHHHHHHHHHcCCCeEEEcCccccCc-cchhHHHHHHHHHhhc
Q 006673 437 VNLARHIANTKAYGANVVVAVNMFAT-DS-----KAELNAVRNAAMAAGAFDAVVCSHHAHGG-KGAVDLGIAVQRACEN 509 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAINrF~t-DT-----~aEI~~v~e~c~~~Gv~~~avs~~wa~GG-eGa~eLA~aVv~a~e~ 509 (636)
..+++.|+..+.+|.+.||..=-+.. +. .+-++.+.+.|++.|+. +++-++.-.+. -...+-+.++++.+.
T Consensus 85 ~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~~~~l~~~v~- 162 (272)
T 2q02_A 85 KKTEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQ-GLVEPLGFRVSSLRSAVWAQQLIREAG- 162 (272)
T ss_dssp HHHHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCE-EEECCCCSTTCSCCCHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCCCcccccCHHHHHHHHHHhC-
Confidence 57899999999999999987322111 11 44455666677788996 88877742111 112333445666654
Q ss_pred CCCCCcccCCC
Q 006673 510 VTQPLKFLYPL 520 (636)
Q Consensus 510 ~~s~fk~LY~~ 520 (636)
.++.++||.
T Consensus 163 --~~~g~~~D~ 171 (272)
T 2q02_A 163 --SPFKVLLDT 171 (272)
T ss_dssp --CCCEEEEEH
T ss_pred --cCeEEEEEc
Confidence 257888764
No 282
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=52.19 E-value=12 Score=42.32 Aligned_cols=36 Identities=28% Similarity=0.302 Sum_probs=30.0
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+|++|++|++ .|.||||++--|++.|. ..|...+..
T Consensus 51 ~g~lIvLtGl----sGSGKSTlAr~La~~L~-~~G~~~v~l 86 (630)
T 1x6v_B 51 RGCTVWLTGL----SGAGKTTVSMALEEYLV-CHGIPCYTL 86 (630)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEEEE
T ss_pred CCCEEEEEeC----CCCCHHHHHHHHHHHHH-hcCCeEEEe
Confidence 6889999997 69999999999999993 567776543
No 283
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=52.14 E-value=11 Score=40.14 Aligned_cols=68 Identities=16% Similarity=0.036 Sum_probs=49.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
..+.++.++++++|+||++|+-.-..+++.+...+++++.|+. +..+ =++=|+|-.+|-+.+++.+.+
T Consensus 129 ~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~-v~~v--SAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 129 EDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAK-VLLV--SALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCC-CCCC--SSCCTTSTTTHHHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCC-EEEE--ECCCCCCHHHHHHHHHHhhhh
Confidence 3556667777899999999997655444445666666677775 4333 356689999999999998843
No 284
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=52.06 E-value=8 Score=37.41 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=22.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|..|.+++ |.|.||||++--|++.|+
T Consensus 25 ~~g~~I~I~G----~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 25 AIAPVITVDG----PSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TTSCEEEEEC----CTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHhcC
Confidence 4578888887 679999999988887773
No 285
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=51.99 E-value=8 Score=35.47 Aligned_cols=27 Identities=37% Similarity=0.593 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|..|.+.+ |.|.||||+.-.|+..+
T Consensus 31 ~~Ge~v~L~G----~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNG----DLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEEC----STTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHhC
Confidence 5688888887 78999999999997776
No 286
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=51.93 E-value=5.3 Score=38.50 Aligned_cols=36 Identities=25% Similarity=0.199 Sum_probs=27.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
.++++|.+.|+ -|.||||.+--|++.|. + ...++||
T Consensus 22 ~~~~~I~ieG~----~GsGKST~~~~L~~~l~---~---~~~i~ep 57 (263)
T 1p5z_B 22 TRIKKISIEGN----IAAGKSTFVNILKQLCE---D---WEVVPEP 57 (263)
T ss_dssp -CCEEEEEECS----TTSSHHHHHTTTGGGCT---T---EEEECCC
T ss_pred cCceEEEEECC----CCCCHHHHHHHHHHhcC---C---CEEEecc
Confidence 46899999997 69999999988877662 2 4556665
No 287
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=51.62 E-value=19 Score=35.01 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=33.8
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 444 ANTKAYGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~aEI~~----v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+.++. ++|+|+++|+-..-+++|++. +++.+...|++-+.+| ++-|+|-.+|-+++.+.+
T Consensus 139 ~~l~~-~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~s---a~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 139 KRLHE-KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFP---ETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHTT-TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC--------------CHHHHHTC
T ss_pred HHHhc-cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCC---CCCChhHHHHHHHHhcCC
Confidence 33444 899999999998888888854 4555566777522222 566788888887776643
No 288
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=51.43 E-value=9.4 Score=34.99 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=21.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.+|.+++ |.|.||||++--|+.-+
T Consensus 4 ~~~~~i~i~G----~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 4 PKPFVIGIAG----GTASGKTTLAQALARTL 30 (211)
T ss_dssp -CCEEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 5688888888 45999999998877666
No 289
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=51.11 E-value=70 Score=30.71 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=62.2
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe--cCCC-CCCHHHH----HHHHHHHHHcC-CCeEEEcCc--cccCc
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV--NMFA-TDSKAEL----NAVRNAAMAAG-AFDAVVCSH--HAHGG 493 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI--NrF~-tDT~aEI----~~v~e~c~~~G-v~~~avs~~--wa~GG 493 (636)
+..+|.+.-++.+..+++.|+..+.+|.+.||.. ..++ .++++.+ +.+++.|+.+. +. +++-++ |...-
T Consensus 100 l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~v~-l~lEn~~~~~~~~ 178 (290)
T 2zvr_A 100 LTHPNDEIRKKAIERVVKHTEVAGMFGALVIIGLVRGRREGRSYEETEELFIESMKRLLELTEHAK-FVIEPLNRYETDF 178 (290)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEESGGGCCCTTSCHHHHHHHHHHHHHHHHHHCSSCC-EEECCCCTTTCSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCCCCCCcCHHHHHHHHHHHHHHHHHHhccCE-EEEEeCCCcCccc
Confidence 3446666778889999999999999999999922 1222 2334444 34445554333 65 777665 22111
Q ss_pred cchhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHH
Q 006673 494 KGAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (636)
Q Consensus 494 eGa~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA~ 533 (636)
-...+-+.++++.+.. .++.+++|. ..++.+=|++...
T Consensus 179 ~~~~~~~~~l~~~~~~--~~vgl~~D~~h~~~~g~d~~~~l~~~~~ 222 (290)
T 2zvr_A 179 INTIDDALRILRKINS--NRVGILADTFHMNIEEVNIPESLKRAGE 222 (290)
T ss_dssp CCSHHHHHHHHHHHCC--TTEEEEEEHHHHHHHCSSHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHcCC--CCEEEEEehhHhhhcCCCHHHHHHHhhc
Confidence 2234555566666642 357777764 2344444555444
No 290
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=51.09 E-value=36 Score=30.32 Aligned_cols=57 Identities=11% Similarity=-0.050 Sum_probs=38.0
Q ss_pred cCCcEEEEecCCCCCC-HHHHHHHHHHHH-HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDS-KAELNAVRNAAM-AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT-~aEI~~v~e~c~-~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+||++|+-.-.. +...+.+.+++. ..++. +..+. ++-|+|-.+|-+.+++.+.
T Consensus 116 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~S--a~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 116 ENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIP-YFETS--AKEAINVEQAFQTIARNAL 174 (207)
T ss_dssp GGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCC-EEECB--TTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCcccccCHHHHHHHHHhcCCce-EEEEe--CCCCCCHHHHHHHHHHHHH
Confidence 5899999999976431 222345566776 45665 44333 5668898888888777664
No 291
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=50.98 E-value=12 Score=41.18 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..+.+|+| |.|.|||||...+...|-
T Consensus 195 ~~~~li~G----ppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 195 RPLSLIQG----PPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CSEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEC----CCCCCHHHHHHHHHHHHH
Confidence 45888888 789999999999988883
No 292
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=50.96 E-value=4.8 Score=36.43 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHhhc---CCcEEEEecCCCCCCHHHH--HHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKAY---GANVVVAVNMFATDSKAEL--NAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~f---GvPvVVAINrF~tDT~aEI--~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++.+.++.++.+ ++|+|+++|+..-..+.++ +.+++++.+.++. +. ++=++=|+|-.+|-+.+++.+.
T Consensus 121 ~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~--~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 121 FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIP-FL--ETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCC-BC--CCCC---HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCe-EE--EEECCCCCCHHHHHHHHHHHHH
Confidence 33455555555554 8999999999875444322 3456778888876 33 2335667888777777665553
No 293
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=50.90 E-value=49 Score=31.49 Aligned_cols=83 Identities=8% Similarity=0.048 Sum_probs=53.9
Q ss_pred HHHHhHHHHHHHHHhhcCCcEEEEec-CCCC--CCHHH-------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHH
Q 006673 433 EAGCVNLARHIANTKAYGANVVVAVN-MFAT--DSKAE-------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIA 502 (636)
Q Consensus 433 ~~G~~NL~kHIeNi~~fGvPvVVAIN-rF~t--DT~aE-------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~a 502 (636)
++....+++.|+..+.+|.+.|+..- ..+. ++++. ++.+.+.|++.|+. +++-+++..-.. ..+-+..
T Consensus 80 ~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~~~~~~~-~~~~~~~ 157 (286)
T 3dx5_A 80 EKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMY-VLLETHPNTLTD-TLPSTLE 157 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCE-EEEECCTTSTTS-SHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCE-EEEecCCCcCcC-CHHHHHH
Confidence 44577899999999999999998743 2222 34433 44556667789996 888777533222 2334556
Q ss_pred HHHHhhcCCCCCcccCC
Q 006673 503 VQRACENVTQPLKFLYP 519 (636)
Q Consensus 503 Vv~a~e~~~s~fk~LY~ 519 (636)
+++.+. +.++.++||
T Consensus 158 l~~~~~--~~~vg~~~D 172 (286)
T 3dx5_A 158 LLGEVD--HPNLKINLD 172 (286)
T ss_dssp HHHHHC--CTTEEEEEE
T ss_pred HHHhcC--CCCeEEEec
Confidence 666664 245888776
No 294
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=50.79 E-value=39 Score=29.35 Aligned_cols=70 Identities=9% Similarity=-0.041 Sum_probs=41.4
Q ss_pred HhHHHH---HHHHHhh---cCCcEEEEecCCCCC----CHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHH
Q 006673 436 CVNLAR---HIANTKA---YGANVVVAVNMFATD----SKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 436 ~~NL~k---HIeNi~~---fGvPvVVAINrF~tD----T~aEI~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
+.++.+ .+..++. -++|+|++.|+-.-. .....+.+++++++. +.. +..+. ++=|+|-.+|-+.++
T Consensus 88 ~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~-~~~~S--a~~~~~i~~lf~~l~ 164 (178)
T 2iwr_A 88 FQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCS-YYETX--ATYGLNVDRVFQEVA 164 (178)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEE-EEEEB--TTTTBTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCe-EEEEe--ccccCCHHHHHHHHH
Confidence 344544 3444544 389999999997541 111233445677665 454 33332 566788888877777
Q ss_pred HHhh
Q 006673 505 RACE 508 (636)
Q Consensus 505 ~a~e 508 (636)
+.+.
T Consensus 165 ~~~~ 168 (178)
T 2iwr_A 165 QKVV 168 (178)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 295
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=50.55 E-value=26 Score=31.18 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=44.3
Q ss_pred HHHHHhhc--CCcEEEEecCCCCC----CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 442 HIANTKAY--GANVVVAVNMFATD----SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tD----T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++.++++ ++|+||++|+-.-. .+...+.+.+++++.|+..+. +.=++=|+|-.+|-+.+++.+.+
T Consensus 117 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 117 WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYI--EASSVAKIGLNEVFEKSVDCIFS 188 (194)
T ss_dssp HHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEE--ECBTTTTBSHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEE--EeecCCCCCHHHHHHHHHHHHHh
Confidence 34444444 79999999997532 112234566788888875333 33467789999999998888754
No 296
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=50.50 E-value=31 Score=30.43 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=38.2
Q ss_pred HHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHH-c----CCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 445 NTKAYGANVVVAVNMFATDSKAELNAVRNAAMA-A----GAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 445 Ni~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~-~----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
.++..++|+++++|+..-..++|++...+..++ . +.. +..+ =++-|+|-.+|-+.+++.+
T Consensus 129 ~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 129 FLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDE-LILF--SSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp HHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSE-EEEC--CTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCc-eEEE--EccCCCCHHHHHHHHHHHh
Confidence 344589999999999876666655443333322 2 333 3333 3466788888888877765
No 297
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=50.49 E-value=24 Score=31.24 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=37.4
Q ss_pred cCCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCcccc-CccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--------------EI~~v~e~c~~~Gv~~~avs~~wa~-GGeGa~eLA~aVv~a~ 507 (636)
-++|+|++.|+..-..+. ..+...+++++.|...+..+ =++ .|+|-.+|-+.+++.+
T Consensus 110 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 110 PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC--SALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp TTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC--BTTTBHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEe--eecCCCcCHHHHHHHHHHHH
Confidence 389999999997653211 12446677887774324433 354 7888888888877765
No 298
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=50.32 E-value=12 Score=38.51 Aligned_cols=59 Identities=7% Similarity=-0.065 Sum_probs=33.3
Q ss_pred cCCcEEEEecCCCCCCHHHHHH----HHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 449 YGANVVVAVNMFATDSKAELNA----VRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~----v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
-++|+|+++|+-..-++.|+.. +.+++++.|+.-+.+|..-.++.+.-.+|++.+.+.+
T Consensus 173 ~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASI 235 (361)
T ss_dssp S-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTC
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcC
Confidence 5799999999999988888864 4555556676523333333334455566777666543
No 299
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=50.29 E-value=30 Score=32.13 Aligned_cols=123 Identities=12% Similarity=0.047 Sum_probs=67.5
Q ss_pred CCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHH
Q 006673 362 PGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLAR 441 (636)
Q Consensus 362 ~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~k 441 (636)
.+||||-+.+-+.+.-..-.+. .-|.+|+|++-. .. .+..+.+
T Consensus 118 ~yD~viiD~p~~~~~~~~~~l~--------~ad~viiv~~~~-------------------------~~----~~~~~~~ 160 (245)
T 3ea0_A 118 FYDYIIVDFGASIDHVGVWVLE--------HLDELCIVTTPS-------------------------LQ----SLRRAGQ 160 (245)
T ss_dssp HCSEEEEEEESSCCTTHHHHGG--------GCSEEEEEECSS-------------------------HH----HHHHHHH
T ss_pred hCCEEEEeCCCCCchHHHHHHH--------HCCEEEEEecCc-------------------------HH----HHHHHHH
Confidence 4599999887665443222221 357788887322 11 2334556
Q ss_pred HHHHHhhcCCc---EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccC
Q 006673 442 HIANTKAYGAN---VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLY 518 (636)
Q Consensus 442 HIeNi~~fGvP---vVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY 518 (636)
.++.++++|.| +-|.+|++...+....+.++ +..|.+ +.-.-.|. -+.+.++.... ..-+.|
T Consensus 161 ~~~~l~~~~~~~~~~~~v~N~~~~~~~~~~~~~~---~~~~~~-v~~~ip~~---------~~~~~~a~~~g--~~v~~~ 225 (245)
T 3ea0_A 161 LLKLCKEFEKPISRIEIILNRADTNSRITSDEIE---KVIGRP-ISKRIPQD---------EDAMQESLLSG--QSVLKV 225 (245)
T ss_dssp HHHHHHTCSSCCSCEEEEEESTTSCTTSCHHHHH---HHHTSC-EEEEECCC---------HHHHHHHHHHT--SCHHHH
T ss_pred HHHHHHHhCCCccceEEEEecCCCCCCCCHHHHH---HHhCCC-eEEECCCC---------hHHHHHHHHcC--CCcccc
Confidence 66667777743 78999999887654433333 345664 32221111 12344444332 123345
Q ss_pred CCCCCHHHHHHHHHH-HhC
Q 006673 519 PLDVSIKEKIDTIAR-SYG 536 (636)
Q Consensus 519 ~~~~~L~eKIetIA~-IYG 536 (636)
..+.+..+-++.+|+ +-|
T Consensus 226 ~~~s~~~~~~~~la~~l~g 244 (245)
T 3ea0_A 226 APKSQLSKTIVDWALHLNG 244 (245)
T ss_dssp CTTSHHHHHHHHHHHCC--
T ss_pred CCCCHHHHHHHHHHHHHhC
Confidence 566778888888887 643
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.17 E-value=9.2 Score=33.83 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=20.2
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..|++|+. .|.||||++--|++.|+
T Consensus 8 ~~i~l~G~----~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGF----MGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESC----TTSSHHHHHHHHHHHHT
T ss_pred ceEEEECC----CCCCHHHHHHHHHHHhC
Confidence 36888886 69999999988887773
No 301
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.82 E-value=6.3 Score=35.26 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=19.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.|++++ |.|.||||++--|++.|+
T Consensus 6 ~i~i~G----~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIG----FMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEEC----CTTSCHHHHHHHHHHHHT
T ss_pred EEEEEc----CCCCCHHHHHHHHHHHcC
Confidence 466666 479999999988887773
No 302
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=49.40 E-value=8.3 Score=33.18 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHH
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGL 93 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL 93 (636)
++|+++|. .|.||||++--|
T Consensus 2 ~~I~l~G~----~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGM----PGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECC----TTSCHHHHHHHH
T ss_pred cEEEEECC----CCCCHHHHHHHH
Confidence 37888885 699999987766
No 303
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=49.19 E-value=1.9e+02 Score=28.01 Aligned_cols=130 Identities=11% Similarity=0.051 Sum_probs=68.4
Q ss_pred hcCCCCeEEeeccccccc-cchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHh
Q 006673 359 LVGPGGFVVTEAGFGADI-GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCV 437 (636)
Q Consensus 359 lag~~dyvVTEAGFGaDl-GaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~ 437 (636)
+....||||-...=+.+. ...-.+ ..-|.+|+|++-. ..++ .++.
T Consensus 153 ~~~~yD~ViiD~p~~~~~~~~~~~l--------~~aD~viiv~~~~-------------------------~~s~-~~~~ 198 (307)
T 3end_A 153 LLDDTDVVIFDVLGDVVCGGFAAPL--------QHADQAVVVTAND-------------------------FDSI-YAMN 198 (307)
T ss_dssp TTSSCSEEEEEECCSSCCGGGGGGG--------GTCSEEEEEECSS-------------------------HHHH-HHHH
T ss_pred ccccCCEEEEeCCCccchHHHHHHH--------HHCCEEEEEecCc-------------------------HHHH-HHHH
Confidence 556679999887433321 111111 2367788887421 1111 2233
Q ss_pred HHHHHHHHHh-hcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCc
Q 006673 438 NLARHIANTK-AYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (636)
Q Consensus 438 NL~kHIeNi~-~fGvPvV-VAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk 515 (636)
.+.+.++.++ ..+++++ |.+|++... + .++++++..|.+ +. ... .. -..+.++.... . .=
T Consensus 199 ~~~~~l~~~~~~~~~~~~gvV~N~~~~~--~---~~~~~~~~~g~~-v~-~~I-p~--------~~~v~~a~~~g-~-~v 260 (307)
T 3end_A 199 RIIAAVQAKSKNYKVRLAGCVANRSRAT--D---EVDRFCKETNFR-RL-AHM-PD--------LDAIRRSRLKK-K-TL 260 (307)
T ss_dssp HHHHHHHTTTTTCCCEEEEEEEESCSCC--H---HHHHHHHHHTCC-EE-EEE-CC--------CHHHHHHHHTT-C-CT
T ss_pred HHHHHHHHhhhcCCCceEEEEEecCCcH--H---HHHHHHHHcCCC-ce-eeC-Cc--------cHHHHHHHHcC-C-Ce
Confidence 3444444433 3778876 899999864 2 355666667875 32 211 11 22344444432 1 12
Q ss_pred ccCCCC---CCHHHHHHHHHH-HhCCCce
Q 006673 516 FLYPLD---VSIKEKIDTIAR-SYGASGV 540 (636)
Q Consensus 516 ~LY~~~---~~L~eKIetIA~-IYGA~~V 540 (636)
+.|..+ .+..+-++.+|+ +.+....
T Consensus 261 ~~~~p~~~~s~~~~~~~~la~~l~~~~~~ 289 (307)
T 3end_A 261 FEMDEDQDVLAARAEYIRLAESLWRGLDP 289 (307)
T ss_dssp TTSCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred EeeCCccccHHHHHHHHHHHHHHHhcCCC
Confidence 223333 457788899998 7765543
No 304
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=49.14 E-value=38 Score=32.97 Aligned_cols=121 Identities=13% Similarity=0.208 Sum_probs=64.8
Q ss_pred HHHHHHH--hHHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 430 ALVEAGC--VNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 430 eaL~~G~--~NL~kHIeNi~~-fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
.+|++|+ ..+...++.+++ +++|+++-. +.. ......+ +.|.+.|+..+.+.+ ...+-++.+++.
T Consensus 71 ~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~--~~~--~~~~~~~-~~a~~aGadgv~v~d-------~~~~~~~~~~~~ 138 (262)
T 1rd5_A 71 RALASGTTMDAVLEMLREVTPELSCPVVLLS--YYK--PIMFRSL-AKMKEAGVHGLIVPD-------LPYVAAHSLWSE 138 (262)
T ss_dssp HHHTTTCCHHHHHHHHHHHGGGCSSCEEEEC--CSH--HHHSCCT-HHHHHTTCCEEECTT-------CBTTTHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCEEEEe--cCc--HHHHHHH-HHHHHcCCCEEEEcC-------CChhhHHHHHHH
Confidence 4555654 224466777776 689977632 110 1111111 228889997454432 222345666666
Q ss_pred hhcCCCCCcccCCCCCCHHHHHHHHHH-----Hh-----CCCce--eeCHHHHHHHHHHHhCCCCCCCeeE
Q 006673 507 CENVTQPLKFLYPLDVSIKEKIDTIAR-----SY-----GASGV--EYSEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 507 ~e~~~s~fk~LY~~~~~L~eKIetIA~-----IY-----GA~~V--~~S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
+.+..-+.-++...+.+ .+.++.++. +| |-.+. .+.+...+.++++.+.- ++|||+
T Consensus 139 ~~~~g~~~i~~~a~~t~-~e~~~~~~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~--~~pI~v 206 (262)
T 1rd5_A 139 AKNNNLELVLLTTPAIP-EDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT--NKPVAV 206 (262)
T ss_dssp HHHTTCEECEEECTTSC-HHHHHHHHHHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC--SSCEEE
T ss_pred HHHcCCceEEEECCCCC-HHHHHHHHhcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhc--CCeEEE
Confidence 65422223344454444 455566554 22 21222 46677778888888763 789987
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=49.08 E-value=17 Score=36.78 Aligned_cols=36 Identities=39% Similarity=0.386 Sum_probs=27.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
.+|..|.+.+ |-|.||||+.--|+--+. .-+.+..+
T Consensus 100 ~~g~vi~lvG----~nGsGKTTll~~Lagll~-~~~g~V~l 135 (304)
T 1rj9_A 100 PKGRVVLVVG----VNGVGKTTTIAKLGRYYQ-NLGKKVMF 135 (304)
T ss_dssp CSSSEEEEEC----STTSSHHHHHHHHHHHHH-TTTCCEEE
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHHH-hcCCEEEE
Confidence 3588988887 359999999999987773 44555443
No 306
>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*
Probab=49.05 E-value=10 Score=38.98 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=70.2
Q ss_pred CeEEeeccccccccchhccccccccCCCCcce---EEEEeeehhhhhcCCCCCccCCCCCcccccc------cCHHH-HH
Q 006673 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQC---AVIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVAL-VE 433 (636)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~a---vVlVaTvRALK~HGG~~~~~~g~pL~~~l~~------eNlea-L~ 433 (636)
||+||-.-|..|. .++|++ +||..|+.--. +--+++.+.+++-.. ..|..+|+++.+ .|.++ .+
T Consensus 178 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~----~~Gv~iP~~l~~~l~~~~dd~~~~~~ 251 (304)
T 3fst_A 178 NRAITQFFFDVES-YLRFRD-RCVSAGIDVEIIPGILPVSNFKQAKKLAD----MTNVRIPAWMAQMFDGLDDDAETRKL 251 (304)
T ss_dssp CEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCSCHHHHHHHHH----HHTCCCCHHHHHHHTTCTTCHHHHHH
T ss_pred CEEEeCccCCHHH-HHHHHH-HHHhcCCCCcEEEEecccCCHHHHHHHHH----cCCCcCCHHHHHHHHhcCCCHHHHHH
Confidence 9999999998876 677877 89999986221 112455666665421 223445654432 24666 67
Q ss_pred HHHhHHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 434 ~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
.|.+--...++.+...|+|-| -++|+. +.+.+.|+.+|..
T Consensus 252 ~Gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~lg~~ 293 (304)
T 3fst_A 252 VGANIAMDMVKILSREGVKDFHFYTLNRA--------EMSYAICHTLGVR 293 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECTTCC--------HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCH--------HHHHHHHHHhCCC
Confidence 888888888888888888765 345665 5677778888875
No 307
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.80 E-value=8.6 Score=36.02 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=21.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++++|+++|. -|.||||.+--|++.|
T Consensus 6 ~~~~I~l~G~----~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGA----PGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEEC----TTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 4678999996 6999999988887766
No 308
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=48.72 E-value=8.9 Score=41.27 Aligned_cols=25 Identities=32% Similarity=0.541 Sum_probs=21.7
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++|+|+| |.|.||||+++-|++.++
T Consensus 3 ~~i~i~G----ptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAG----TTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEE----CSSSSHHHHHHHHHHHHT
T ss_pred cEEEEEC----cchhhHHHHHHHHHHHCC
Confidence 5788887 669999999999999985
No 309
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.83 E-value=17 Score=37.74 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
+.|++|+|++ |-|.||||+.--|..-+. .-+...+..+-+|
T Consensus 134 ~~g~~i~ivG----~~GsGKTTll~~l~~~~~-~~~~g~I~~~e~~ 174 (372)
T 2ewv_A 134 RKMGLILVTG----PTGSGKSTTIASMIDYIN-QTKSYHIITIEDP 174 (372)
T ss_dssp SSSEEEEEEC----SSSSSHHHHHHHHHHHHH-HHSCCEEEEEESS
T ss_pred cCCCEEEEEC----CCCCCHHHHHHHHHhhcC-cCCCcEEEEeccc
Confidence 5688999998 449999999998888773 4334456555554
No 310
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=47.77 E-value=14 Score=40.97 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=27.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcC-CcE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLD-KKV 105 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg-~~~ 105 (636)
.+|.+|++|++ .|.||||++.-|.+.|+ ..| ..+
T Consensus 394 q~~~~I~l~Gl----sGSGKSTiA~~La~~L~-~~G~~~~ 428 (573)
T 1m8p_A 394 TQGFTIFLTGY----MNSGKDAIARALQVTLN-QQGGRSV 428 (573)
T ss_dssp TCCEEEEEECS----TTSSHHHHHHHHHHHHH-HHCSSCE
T ss_pred ccceEEEeecC----CCCCHHHHHHHHHHHhc-ccCCceE
Confidence 35789999997 59999999999999995 556 443
No 311
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=47.44 E-value=17 Score=37.99 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGP 116 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP 116 (636)
+.|++|+|++ |.|.||||++.-++..+ .+.|.+++..==|.|.-|
T Consensus 72 ~~G~li~I~G----~pGsGKTtlal~la~~~-~~~g~~vlyi~~E~s~~~ 116 (366)
T 1xp8_A 72 PRGRITEIYG----PESGGKTTLALAIVAQA-QKAGGTCAFIDAEHALDP 116 (366)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH-HHTTCCEEEEESSCCCCH
T ss_pred cCCcEEEEEc----CCCCChHHHHHHHHHHH-HHCCCeEEEEECCCChhH
Confidence 5799999987 56999999999998887 355666655544555443
No 312
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=46.57 E-value=22 Score=37.40 Aligned_cols=37 Identities=27% Similarity=-0.020 Sum_probs=30.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
-++|-|+||+... .-|||||+..|.++| .+.|.++..
T Consensus 167 i~~~ri~v~GTDt---~vGKt~t~~~L~~~l-~~~G~~v~~ 203 (350)
T 2g0t_A 167 KKIKVVGVFGTDC---VVGKRTTAVQLWERA-LEKGIKAGF 203 (350)
T ss_dssp CCSEEEEEEESSS---SSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred ecceEEEEecCCC---CccCccHHHHHHHHH-HhcCCeEEE
Confidence 3588899999433 589999999999999 588998754
No 313
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=46.56 E-value=13 Score=35.18 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..++.|+++++ -|.||||.+.-|++.|
T Consensus 14 ~~~~~I~l~G~----~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGP----PGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHHh
Confidence 34678999986 4999999999888877
No 314
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=46.45 E-value=10 Score=34.79 Aligned_cols=27 Identities=22% Similarity=0.437 Sum_probs=20.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|++|.+|+. .|.||||++--|+..+
T Consensus 19 ~~~~~i~i~G~----~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGV----TNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEES----TTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECC----CCCCHHHHHHHHHHhc
Confidence 56889999985 4999999876665433
No 315
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3
Probab=46.17 E-value=50 Score=35.29 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccch
Q 006673 439 LARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA 496 (636)
Q Consensus 439 L~kHIeNi~~fGvPvV-VAIN---rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa 496 (636)
.++.|+.|+..|+++| +.++ .|..+.-+.++.+.++|.+.|+. +++.-|...|..+.
T Consensus 41 ~~~di~~ik~~G~N~VRipv~~g~~~~~~~l~~ld~vv~~a~~~Gl~-VIlDlH~~~g~~~~ 101 (464)
T 1wky_A 41 ATTAIEGIANTGANTVRIVLSDGGQWTKDDIQTVRNLISLAEDNNLV-AVLEVHDATGYDSI 101 (464)
T ss_dssp HHHHHHHHHTTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEECTTTTCCCH
T ss_pred hHHHHHHHHHCCCCEEEEEcCCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEecCCCCCCCh
Confidence 3568889999999999 7776 57788899999999999999997 88887877766543
No 316
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=46.10 E-value=12 Score=32.89 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.|++|+. .|.||||++--|++.|
T Consensus 2 ~I~l~G~----~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGF----MCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESC----TTSCHHHHHHHHHHHH
T ss_pred eEEEECC----CCCCHHHHHHHHHHHh
Confidence 4777775 6999999998888776
No 317
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=46.08 E-value=90 Score=30.36 Aligned_cols=87 Identities=9% Similarity=0.056 Sum_probs=54.4
Q ss_pred HHHHHHhHHHHHHHHHhhcCCcEEEEec-C--------CCCC----CHHH-------HHHHHHHHHHcCCCeEEEcCccc
Q 006673 431 LVEAGCVNLARHIANTKAYGANVVVAVN-M--------FATD----SKAE-------LNAVRNAAMAAGAFDAVVCSHHA 490 (636)
Q Consensus 431 aL~~G~~NL~kHIeNi~~fGvPvVVAIN-r--------F~tD----T~aE-------I~~v~e~c~~~Gv~~~avs~~wa 490 (636)
.-++.+..+++.|+..+.+|.+.||..- . |+.+ +++. ++.+.+.|++.|+. +++-+++.
T Consensus 105 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~ 183 (340)
T 2zds_A 105 VRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVR-FAHEVHPS 183 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEECCTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCE-EEEEcCCC
Confidence 3567788999999999999999998742 1 1111 2332 33444566778996 88877765
Q ss_pred cCccchhHHHHHHHHHhhcCCCCCcccCCC
Q 006673 491 HGGKGAVDLGIAVQRACENVTQPLKFLYPL 520 (636)
Q Consensus 491 ~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~ 520 (636)
.... ..+-+.++++.+.. ..++.++||.
T Consensus 184 ~~~~-~~~~~~~ll~~v~~-~~~vg~~~D~ 211 (340)
T 2zds_A 184 EIAY-DYWTTHRALEAVGH-RPAFGLNFDP 211 (340)
T ss_dssp SSCC-SHHHHHHHHHHTTT-CTTEEEEECC
T ss_pred cccC-CHHHHHHHHHhcCC-CCCeeEEEch
Confidence 4433 23334556666541 1347777765
No 318
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=46.02 E-value=34 Score=35.98 Aligned_cols=66 Identities=23% Similarity=0.179 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCcEEEEecCCCCC--CHHHHHHHHHHHHHc-----CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 441 RHIANTKAYGANVVVAVNMFATD--SKAELNAVRNAAMAA-----GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tD--T~aEI~~v~e~c~~~-----Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
++++.++..|.|+|+++|+..-. .+...+.+.+.+++. +++ +..+. |+=|+|-.+|-+.+.+.+++
T Consensus 297 ~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~S--A~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 297 RIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMS--ALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp HHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC-EEECC--TTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC-EEEEc--CCCCcCHHHHHHHHHHHHHH
Confidence 44555666899999999998753 233445555555543 455 44444 45589999998888888764
No 319
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*
Probab=45.99 E-value=2.5e+02 Score=30.23 Aligned_cols=39 Identities=5% Similarity=0.117 Sum_probs=31.0
Q ss_pred CCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccc
Q 006673 450 GAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (636)
Q Consensus 450 GvP-vVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa 490 (636)
.+| |.|=|- +..|++|+..+.+.|++.|+..+++++.+.
T Consensus 268 ~~P~V~VKi~--pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~ 307 (415)
T 3i65_A 268 KKPLVFVKLA--PDLNQEQKKEIADVLLETNIDGMIISNTTT 307 (415)
T ss_dssp SCCEEEEEEC--SCCCHHHHHHHHHHHHHHTCSEEEECCCBS
T ss_pred CCCeEEEEec--CCCCHHHHHHHHHHHHHcCCcEEEEeCCCc
Confidence 688 777665 445678899999999999998778887764
No 320
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=45.97 E-value=17 Score=36.68 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|.+|.+.+ |-|.|||||.--|+--+. .-+.+..
T Consensus 98 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~g~V~ 132 (302)
T 3b9q_A 98 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 132 (302)
T ss_dssp SSCEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCcEEEEEc----CCCCCHHHHHHHHHHHHH-HcCCeEE
Confidence 4588999988 679999999998887773 4455544
No 321
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=45.76 E-value=57 Score=29.01 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=40.3
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 442 HIANTKAY--GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tDT~a--------------EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
.++.++.+ ++|+||+.|+..-..+. ..+...+++++.+...+..+ =++=|+|-.+|-+.+++
T Consensus 114 ~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--Sa~~g~gi~~l~~~l~~ 191 (201)
T 2q3h_A 114 WVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIEC--SALTQKNLKEVFDAAIV 191 (201)
T ss_dssp HHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC--CTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEE--ecCCCCCHHHHHHHHHH
Confidence 34444443 89999999997643211 12345667777776324333 35567888888887777
Q ss_pred Hhh
Q 006673 506 ACE 508 (636)
Q Consensus 506 a~e 508 (636)
.+.
T Consensus 192 ~~~ 194 (201)
T 2q3h_A 192 AGI 194 (201)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 322
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=45.76 E-value=18 Score=37.91 Aligned_cols=78 Identities=13% Similarity=0.093 Sum_probs=46.6
Q ss_pred HHHHHHHcCCCCcccccccCe-----eeeecc--chhhhc-c--CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhh
Q 006673 31 ISEIAQELNLKPNHYDLYGKY-----KAKVLL--SVLDEL-E--GSADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAF 100 (636)
Q Consensus 31 I~~ia~~lgl~~~~l~~YG~~-----kAKi~~--~~~~~~-~--~~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~ 100 (636)
|.+|-+++|-.. +.+.+.. ...++. .-|+++ . .-+.|.+++|.+ |.|.||||++.-++..+ ..
T Consensus 15 ~~~~~~~~~~~~--~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~G----ppGsGKSTLal~la~~~-~~ 87 (356)
T 3hr8_A 15 LKRIEENFGKGS--IMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFG----QESSGKTTLALHAIAEA-QK 87 (356)
T ss_dssp HHHHHHHHCTTS--SCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEE----STTSSHHHHHHHHHHHH-HH
T ss_pred HHHHHHHhCCCC--ceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEEC----CCCCCHHHHHHHHHHHH-Hh
Confidence 666777776541 2222211 223443 234553 2 235799999998 68999999999998877 45
Q ss_pred cCCcEEEEeeCCCCC
Q 006673 101 LDKKVVTCLRQPSQG 115 (636)
Q Consensus 101 lg~~~~~~lRePSlG 115 (636)
.|.+++..=-|.+.-
T Consensus 88 ~gg~VlyId~E~s~~ 102 (356)
T 3hr8_A 88 MGGVAAFIDAEHALD 102 (356)
T ss_dssp TTCCEEEEESSCCCC
T ss_pred cCCeEEEEecccccc
Confidence 566654433344443
No 323
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}
Probab=45.29 E-value=21 Score=35.81 Aligned_cols=80 Identities=16% Similarity=0.103 Sum_probs=50.3
Q ss_pred cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 006673 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (636)
Q Consensus 393 P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~ 472 (636)
-|.+=+|--+.+||- |. +++-.+++.++.+-|. ..-++||+--... |++|+....
T Consensus 109 AdEIDmViNig~lk~--g~----------~~~v~~eI~~v~~a~~----------~~~lKVIlEt~~L---t~eei~~a~ 163 (239)
T 3ngj_A 109 AEEVDMVINIGMVKA--KK----------YDDVEKDVKAVVDASG----------KALTKVIIECCYL---TNEEKVEVC 163 (239)
T ss_dssp CSEEEEECCHHHHHT--TC----------HHHHHHHHHHHHHHHT----------TSEEEEECCGGGS---CHHHHHHHH
T ss_pred CCEEEEEeehHHhcc--cc----------HHHHHHHHHHHHHHhc----------CCceEEEEecCCC---CHHHHHHHH
Confidence 577888888888872 21 2333344444444332 1224444433332 688999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchh
Q 006673 473 NAAMAAGAFDAVVCSHHAHGGKGAV 497 (636)
Q Consensus 473 e~c~~~Gv~~~avs~~wa~GGeGa~ 497 (636)
+.|.++|+..+=.|+.|..||.=-.
T Consensus 164 ~ia~~aGADfVKTSTGf~~ggAt~~ 188 (239)
T 3ngj_A 164 KRCVAAGAEYVKTSTGFGTHGATPE 188 (239)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHH
T ss_pred HHHHHHCcCEEECCCCCCCCCCCHH
Confidence 9999999975556778988876543
No 324
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=45.23 E-value=9.7 Score=39.83 Aligned_cols=25 Identities=20% Similarity=0.594 Sum_probs=21.3
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++|+|+| |.|.||||++.-|++.|+
T Consensus 8 ~lI~I~G----ptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVG----PTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred ceEEEEC----CCcCcHHHHHHHHHHHcC
Confidence 5788888 469999999999998884
No 325
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=44.90 E-value=34 Score=35.36 Aligned_cols=70 Identities=21% Similarity=0.126 Sum_probs=43.7
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCCC-CHHHH----HHHHHHHHHcCC-----CeEEEcCccc-cC------ccc-hhH
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFATD-SKAEL----NAVRNAAMAAGA-----FDAVVCSHHA-HG------GKG-AVD 498 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~tD-T~aEI----~~v~e~c~~~Gv-----~~~avs~~wa-~G------GeG-a~e 498 (636)
....|++.++..|+| +||++|+-.-- .++.+ +.+++++++.|. . ++.+..+. .+ ++| -.+
T Consensus 106 qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~i~~SA~~g~n~~~~~~~~g~i~~ 184 (397)
T 1d2e_A 106 QTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETP-IIVGSALCALEQRDPELGLKSVQK 184 (397)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSC-EEECCHHHHHTTCCTTTTHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCc-EEEeehhhcccccCCCccCCcHHH
Confidence 345677778889999 68999998654 23323 345667777773 4 55554443 11 234 467
Q ss_pred HHHHHHHHhh
Q 006673 499 LGIAVQRACE 508 (636)
Q Consensus 499 LA~aVv~a~e 508 (636)
|-+.+.+.+.
T Consensus 185 Ll~~l~~~~p 194 (397)
T 1d2e_A 185 LLDAVDTYIP 194 (397)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhCC
Confidence 7777776553
No 326
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A*
Probab=44.89 E-value=35 Score=33.40 Aligned_cols=52 Identities=19% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCc
Q 006673 441 RHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG 493 (636)
Q Consensus 441 kHIeNi~~fGvPvV-VAIN---rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GG 493 (636)
+.++.|++.|+++| +.++ .+..+..+.++.+.++|.+.|.. +++.-|...|.
T Consensus 36 ~~~~~lk~~G~N~VRi~~~~~~~w~~~~~~~ld~~v~~a~~~Gi~-Vild~h~~~~~ 91 (302)
T 1bqc_A 36 QAFADIKSHGANTVRVVLSNGVRWSKNGPSDVANVISLCKQNRLI-CMLEVHDTTGY 91 (302)
T ss_dssp THHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHHTTCE-EEEEEGGGTTT
T ss_pred HHHHHHHHcCCCEEEEEccCCcccCCCCHHHHHHHHHHHHHCCCE-EEEEeccCCCC
Confidence 56888899999999 7777 57777888999999999999996 88887766553
No 327
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=44.88 E-value=24 Score=33.36 Aligned_cols=73 Identities=11% Similarity=0.028 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCccc
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFL 517 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~L 517 (636)
.+++.|+..+.+|.+.||.- +. .+.++.+.+.|++.|+. +++-++...---.. .+.+.+.++..+.++.+.
T Consensus 92 ~~~~~i~~A~~lGa~~v~~~---~~--~~~~~~l~~~a~~~gv~-l~~En~~~~~~~~~---~~~~~~ll~~~~~~~g~~ 162 (262)
T 3p6l_A 92 DWEKMFKFAKAMDLEFITCE---PA--LSDWDLVEKLSKQYNIK-ISVHNHPQPSDYWK---PENLLKAISGRSQSLGSC 162 (262)
T ss_dssp HHHHHHHHHHHTTCSEEEEC---CC--GGGHHHHHHHHHHHTCE-EEEECCSSSSSSSS---HHHHHHHHTTSCTTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEec---CC--HHHHHHHHHHHHHhCCE-EEEEeCCCccccCC---HHHHHHHHHhCCCceEEE
Confidence 58889999999999999973 32 46788889999999996 88888753111011 223344443223457877
Q ss_pred CC
Q 006673 518 YP 519 (636)
Q Consensus 518 Y~ 519 (636)
||
T Consensus 163 ~D 164 (262)
T 3p6l_A 163 SD 164 (262)
T ss_dssp EE
T ss_pred ec
Confidence 76
No 328
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=44.85 E-value=20 Score=36.85 Aligned_cols=38 Identities=29% Similarity=0.336 Sum_probs=29.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
.++|.+|.+.+- -|.|||||.--|+--+ ..-|.+..+.
T Consensus 126 ~~~g~vi~lvG~----nGaGKTTll~~Lag~l-~~~~g~V~l~ 163 (328)
T 3e70_C 126 AEKPYVIMFVGF----NGSGKTTTIAKLANWL-KNHGFSVVIA 163 (328)
T ss_dssp SCSSEEEEEECC----TTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHH-HhcCCEEEEE
Confidence 356899999884 6999999999998877 4556665543
No 329
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=44.71 E-value=40 Score=34.86 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=44.2
Q ss_pred HHHHHHHHhhcCC-cEEEEecCCCCCCHHH----HHHHHHHHHH---cCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 439 LARHIANTKAYGA-NVVVAVNMFATDSKAE----LNAVRNAAMA---AGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 439 L~kHIeNi~~fGv-PvVVAINrF~tDT~aE----I~~v~e~c~~---~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
...|+..++.+|+ |+||++|+-.--++++ ++.+++++++ .+++ ++.+..+ =|+|-.+|-+.+.+.+.
T Consensus 125 t~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA~--~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 125 TREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP-IIPISAL--HGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC-EEECBTT--TTBSHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe-EEEeeCC--CCCCHHHHHHHHHHhCC
Confidence 4456666677787 6899999987655544 3445555554 3454 5554444 47888888888887664
No 330
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=44.71 E-value=13 Score=31.60 Aligned_cols=57 Identities=14% Similarity=0.083 Sum_probs=36.8
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 446 TKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
+++.++|+|+++|+-.-..+ -+.+.+++ +.|...+..+. ++-|+|-.+|-+.+++.+
T Consensus 104 ~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~-~~~~~~~~~~S--a~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 104 LRRKGKPVILVATKVDDPKH--ELYLGPLY-GLGFGDPIPTS--SEHARGLEELLEAIWERL 160 (161)
T ss_dssp HHHHTCCEEEEEECCCSGGG--GGGCGGGG-GGSSCSCEECB--TTTTBSHHHHHHHHHHHC
T ss_pred HHhcCCCEEEEEECcccccc--hHhHHHHH-hCCCCCeEEEe--cccCCChHHHHHHHHHhC
Confidence 34478999999999754332 23345555 56762244333 667889888888777653
No 331
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=44.68 E-value=19 Score=33.28 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=25.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH-HHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ-ALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~-aL~~~lg~~~~ 106 (636)
+.|.+++|+| +.|.||||.+.=++- ++ .+.|+++.
T Consensus 28 ~~G~l~~i~G----~pG~GKT~l~l~~~~~~~-~~~~~~v~ 63 (251)
T 2zts_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIYKGA-EEYGEPGV 63 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHHHHH-HHHCCCEE
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHHH-HhcCCCce
Confidence 5799999999 579999999887653 33 24466554
No 332
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Probab=44.65 E-value=26 Score=34.43 Aligned_cols=81 Identities=20% Similarity=0.193 Sum_probs=51.7
Q ss_pred cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 006673 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (636)
Q Consensus 393 P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~ 472 (636)
-|.+-+|.-+.++|-. . ++.-.+++.++.+ -...+++||++---.. |++|+....
T Consensus 85 Adevd~vinig~~~~g--~----------~~~v~~ei~~v~~----------a~~~~~lkvIlet~~l---~~e~i~~a~ 139 (220)
T 1ub3_A 85 ADEVDMVLHLGRAKAG--D----------LDYLEAEVRAVRE----------AVPQAVLKVILETGYF---SPEEIARLA 139 (220)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHH----------HSTTSEEEEECCGGGS---CHHHHHHHH
T ss_pred CCEEEecccchhhhCC--C----------HHHHHHHHHHHHH----------HHcCCCceEEEecCCC---CHHHHHHHH
Confidence 5778888888887632 1 2222233333333 2334677777755443 589999999
Q ss_pred HHHHHcCCCeEEEcCccccCccchhH
Q 006673 473 NAAMAAGAFDAVVCSHHAHGGKGAVD 498 (636)
Q Consensus 473 e~c~~~Gv~~~avs~~wa~GGeGa~e 498 (636)
+.|.++|+..+=.|+.|..||.--.+
T Consensus 140 ~ia~eaGADfVKTsTGf~~~gat~~d 165 (220)
T 1ub3_A 140 EAAIRGGADFLKTSTGFGPRGASLED 165 (220)
T ss_dssp HHHHHHTCSEEECCCSSSSCCCCHHH
T ss_pred HHHHHhCCCEEEeCCCCCCCCCCHHH
Confidence 99999999744456779888765533
No 333
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=44.64 E-value=35 Score=32.44 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=54.0
Q ss_pred hHHHHHHHHHhhcCCcEEEEe-cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCc
Q 006673 437 VNLARHIANTKAYGANVVVAV-NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLK 515 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAI-NrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk 515 (636)
..+++.|+..+.+|.|.||.- -.+..+ .-+..+.+.+++.|+. +++-+++..=+ +..+-+..+++.++...+++.
T Consensus 84 ~~~~~~i~~A~~lGa~~v~~~~g~~~~~--~~l~~l~~~a~~~Gv~-l~lEn~~~~~~-~~~~~~~~ll~~v~~~~~~vg 159 (264)
T 1yx1_A 84 PELEPTLRRAEACGAGWLKVSLGLLPEQ--PDLAALGRRLARHGLQ-LLVENDQTPQG-GRIEVLERFFRLAERQQLDLA 159 (264)
T ss_dssp TTHHHHHHHHHHTTCSEEEEEEECCCSS--CCHHHHHHHHTTSSCE-EEEECCSSHHH-HCHHHHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcH--HHHHHHHHHHHhcCCE-EEEecCCCCCC-CCHHHHHHHHHHHHhcCCCeE
Confidence 578899999999999998753 233332 2677888888899996 88877753211 233445566676643223388
Q ss_pred ccCCC
Q 006673 516 FLYPL 520 (636)
Q Consensus 516 ~LY~~ 520 (636)
++||.
T Consensus 160 ~~~D~ 164 (264)
T 1yx1_A 160 MTFDI 164 (264)
T ss_dssp EEEET
T ss_pred EEEeh
Confidence 88876
No 334
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=44.63 E-value=8.9 Score=44.25 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=27.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhc-----CCcEEEEee
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFL-----DKKVVTCLR 110 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~l-----g~~~~~~lR 110 (636)
-|-|+|++ |-.|.||||+|.||.++|. +. |.+ ++-.+
T Consensus 34 ~~~l~I~g---t~s~vGKT~vt~gL~r~l~-~~~~~~~G~~-V~~fK 75 (831)
T 4a0g_A 34 HPTYLIWS---ANTSLGKTLVSTGIAASFL-LQQPSSSATK-LLYLK 75 (831)
T ss_dssp SCEEEEEE---SSSSSCHHHHHHHHHHHHH-SCSSCCTTCE-EEEEE
T ss_pred cccEEEEE---CCCCCCHHHHHHHHHHHHH-hcccccCCce-EEEEc
Confidence 34577776 5679999999999999994 65 655 34444
No 335
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=44.51 E-value=1.3e+02 Score=33.48 Aligned_cols=21 Identities=24% Similarity=0.294 Sum_probs=16.0
Q ss_pred HHHHHhhcCCcEEEEecCCCC
Q 006673 442 HIANTKAYGANVVVAVNMFAT 462 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~t 462 (636)
|++.++.+++|+||++|+-.-
T Consensus 114 ~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 114 ALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp HHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHHHcCCeEEEEeccccc
Confidence 334466799999999998653
No 336
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=44.22 E-value=13 Score=40.77 Aligned_cols=27 Identities=19% Similarity=0.411 Sum_probs=24.1
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+|..|.+|+. .|.||||++..|++.|+
T Consensus 394 ~~~~I~l~Gl----sGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNS----LTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTT----CCSCHHHHHHHHHHHHT
T ss_pred cceEEEeccc----CCCCHHHHHHHHHHHHH
Confidence 5778999997 59999999999999995
No 337
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=43.82 E-value=11 Score=33.00 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.4
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~ 95 (636)
++|+++|. .|.||||++--|++
T Consensus 3 ~~I~i~G~----~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGC----PGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHH
T ss_pred eEEEEecC----CCCCHHHHHHHHHh
Confidence 57888885 69999999888876
No 338
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=43.68 E-value=12 Score=35.45 Aligned_cols=42 Identities=31% Similarity=0.403 Sum_probs=31.6
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
|+|+++| |.|.||||+.-.|.+-+..+++...-.+=|.|--|
T Consensus 2 RpIVi~G----PSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~g 43 (186)
T 1ex7_A 2 RPIVISG----PSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAG 43 (186)
T ss_dssp CCEEEEC----CTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTT
T ss_pred CEEEEEC----CCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCC
Confidence 4577776 88999999998887766334666667778988766
No 339
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=43.53 E-value=24 Score=34.77 Aligned_cols=34 Identities=32% Similarity=0.392 Sum_probs=25.8
Q ss_pred hhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 59 VLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 59 ~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+++.+. -+.|.+|+|++ |-|.||||+.--|..-+
T Consensus 16 vl~~i~-i~~g~~v~i~G----p~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTG----PTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEEC----STTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEEC----CCCccHHHHHHHHHHhC
Confidence 344443 35699999998 45999999998887766
No 340
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=43.45 E-value=14 Score=33.48 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=24.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
+-|++++ |.|.||||++..++..+. +-|.+
T Consensus 55 ~~~~l~G----~~GtGKT~la~~i~~~~~-~~~~~ 84 (202)
T 2w58_A 55 KGLYLHG----SFGVGKTYLLAAIANELA-KRNVS 84 (202)
T ss_dssp CEEEEEC----STTSSHHHHHHHHHHHHH-TTTCC
T ss_pred CeEEEEC----CCCCCHHHHHHHHHHHHH-HcCCe
Confidence 6788887 679999999999999884 44544
No 341
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=43.43 E-value=13 Score=35.74 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=21.6
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|+++.++| |.|.||||+.--|..-+
T Consensus 14 ~~G~ii~l~G----psGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 14 AQGTLYIVSA----PSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp -CCCEEEEEC----CTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHhccC
Confidence 6799999998 78999999887765444
No 342
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=43.43 E-value=63 Score=30.07 Aligned_cols=84 Identities=15% Similarity=0.097 Sum_probs=48.3
Q ss_pred cCCCCeEEeecccc-ccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhH
Q 006673 360 VGPGGFVVTEAGFG-ADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438 (636)
Q Consensus 360 ag~~dyvVTEAGFG-aDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~N 438 (636)
...+||||-..+-+ .+......+. ..|.+|+|++-.. ..+. .
T Consensus 65 ~~~yD~viiD~p~~~~~~~~~~~l~--------~aD~viiv~~~~~----------------------~~~~-------~ 107 (209)
T 3cwq_A 65 APKYQNIVIDTQARPEDEDLEALAD--------GCDLLVIPSTPDA----------------------LALD-------A 107 (209)
T ss_dssp GGGCSEEEEEEECCCSSSHHHHHHH--------TSSEEEEEECSSH----------------------HHHH-------H
T ss_pred hhcCCEEEEeCCCCcCcHHHHHHHH--------HCCEEEEEecCCc----------------------hhHH-------H
Confidence 34569999887766 4443333321 3577888873221 1122 2
Q ss_pred HHHHHHHHhhc-CCcEEEEecCCCCCC-HHHHHHHHHHHHHcCCC
Q 006673 439 LARHIANTKAY-GANVVVAVNMFATDS-KAELNAVRNAAMAAGAF 481 (636)
Q Consensus 439 L~kHIeNi~~f-GvPvVVAINrF~tDT-~aEI~~v~e~c~~~Gv~ 481 (636)
+.+-++.++++ +.++.|.+|++...+ ..+ +.+.+.+++.|..
T Consensus 108 ~~~~~~~l~~~~~~~~~vv~N~~~~~~~~~~-~~~~~~l~~~g~~ 151 (209)
T 3cwq_A 108 LMLTIETLQKLGNNRFRILLTIIPPYPSKDG-DEARQLLTTAGLP 151 (209)
T ss_dssp HHHHHHHHHHTCSSSEEEEECSBCCTTSCHH-HHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccCCCEEEEEEecCCccchHH-HHHHHHHHHcCCc
Confidence 33333344442 788999999998876 332 3445666667764
No 343
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=43.40 E-value=19 Score=38.67 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhcC--CcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 438 NLARHIANTKAYG--ANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 438 NL~kHIeNi~~fG--vPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
++..-++.+++++ .|+||+.|+..-..+. ..+.+++.+.+.|.. +..+ =++-|+|-.+|-+.+.+.+.+.
T Consensus 136 ~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~~v--SA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 136 NKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENR-FHRI--SCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp GHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTC-EEEC--CC-----CTTHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCc-eEEE--ecCcccCHHHHHHHHHHHHhcc
Confidence 3445556666665 9999999998653222 345677777788876 3333 3566899999999999988653
No 344
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=43.38 E-value=33 Score=35.60 Aligned_cols=68 Identities=13% Similarity=0.127 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCC-cEEEEecCCCCCCH----HHHHHHHHHHHHc---CCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 439 LARHIANTKAYGA-NVVVAVNMFATDSK----AELNAVRNAAMAA---GAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 439 L~kHIeNi~~fGv-PvVVAINrF~tDT~----aEI~~v~e~c~~~---Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
-..|+..++.+|+ |+||++|+-.--++ +..+.+++++++. ++. ++.+.. .=|+|-.+|-+.+.+.+..
T Consensus 123 t~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~-~i~vSA--~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 123 TKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAP-IIPISA--HHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp HHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCC-EEEC--------CHHHHHHHHHHHSCC
T ss_pred hHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCe-EEEeeC--CCCCCHHHHHHHHHHhCCC
Confidence 3456666677887 69999999765333 2355667776642 444 444444 4478888888888876643
No 345
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=43.16 E-value=14 Score=32.87 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.+.|+++| |.|.||||++.-+++.+.
T Consensus 45 ~~~~ll~G----~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSG----TRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEEC----STTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 45889988 579999999999888774
No 346
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=43.10 E-value=15 Score=35.11 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.+|-+|+ |.|.||||++--|+.-|
T Consensus 23 ~~g~iigI~G----~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSG----GTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 4588888887 67999999998776655
No 347
>4hf7_A Putative acylhydrolase; PF13472 family, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: OSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=43.07 E-value=55 Score=29.96 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=30.6
Q ss_pred HhHHHHHHHHHhhcCCcEEEEe----cCCC-----CCCHHHH----HHHHHHHHHcCCC
Q 006673 436 CVNLARHIANTKAYGANVVVAV----NMFA-----TDSKAEL----NAVRNAAMAAGAF 481 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAI----NrF~-----tDT~aEI----~~v~e~c~~~Gv~ 481 (636)
..||.+-|+.++.-+.++|+.- +.++ .+..+.+ ++++++|++.++.
T Consensus 104 ~~~l~~ii~~~~~~~~~iil~~~~P~~~~~~~~~~~~~~~~i~~~n~~i~~~a~~~~v~ 162 (209)
T 4hf7_A 104 FGNIASMAELAKANKIKVILTSVLPAAEFPWRREIKDAPQKIQSLNARIEAYAKANKIP 162 (209)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCCCCSCCTTCTTCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhHHHhccCceEEEEeeeccCcccccccccchhHHHHHHHHHHHHHHHhcCCe
Confidence 4578888888888898887752 3332 2334444 3467888888986
No 348
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=43.03 E-value=17 Score=38.38 Aligned_cols=31 Identities=23% Similarity=0.281 Sum_probs=26.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
++.|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 112 ~~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~~ 142 (451)
T 3lk7_A 112 SQLIGITGSN------GKTTTTTMIAEVL-NAGGQRGL 142 (451)
T ss_dssp SEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEE
Confidence 5899999975 9999999999999 57898764
No 349
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=42.94 E-value=34 Score=31.42 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=36.7
Q ss_pred CCcEEEEecCCCCCCHH--------------HHHHHHHHHHHcCCCeEEEcCcccc-CccchhHHHHHHHHHh
Q 006673 450 GANVVVAVNMFATDSKA--------------ELNAVRNAAMAAGAFDAVVCSHHAH-GGKGAVDLGIAVQRAC 507 (636)
Q Consensus 450 GvPvVVAINrF~tDT~a--------------EI~~v~e~c~~~Gv~~~avs~~wa~-GGeGa~eLA~aVv~a~ 507 (636)
++|+|++.|+..-..+. ..+.+++++++.|...+..+ =++ .|+|-.+|-+.+++.+
T Consensus 132 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~--SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 132 NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC--SALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEEC--CTTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEe--eeccCCcCHHHHHHHHHHHH
Confidence 79999999997653211 12346677877774324433 355 7788888877777654
No 350
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=42.90 E-value=15 Score=32.76 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.1
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.++++ |-|.||||+.-.|.-+|
T Consensus 28 ~~~i~G----~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVG----ANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEE----CTTSSHHHHHHHHHHHT
T ss_pred cEEEEC----CCCCCHHHHHHHHHHHH
Confidence 788888 67999999988777666
No 351
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=42.86 E-value=12 Score=35.88 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=21.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+..+-||+++ |.|.||||++..+++.+
T Consensus 62 ~~~~~vLl~G----~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEG----PPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCcHHHHHHHHHHHh
Confidence 3455677776 56999999998888776
No 352
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=42.59 E-value=2.1e+02 Score=29.84 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=66.7
Q ss_pred HhHHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHH---HcCCCeEEEcCcc---ccCccc---hhHHHHHHHH
Q 006673 436 CVNLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAM---AAGAFDAVVCSHH---AHGGKG---AVDLGIAVQR 505 (636)
Q Consensus 436 ~~NL~kHIeNi~~-fGvPvVVAINrF~tDT~aEI~~v~e~c~---~~Gv~~~avs~~w---a~GGeG---a~eLA~aVv~ 505 (636)
+..+.+++..+++ .+.|++|-|+- .+.+|.....+.+. +.|+. ++.-+.. .+||.. ..++..++++
T Consensus 111 ~~~~~~~l~~~~~~~~~pvivsI~G---~~~~d~~~~a~~l~~~~~~g~d-~ielNisCPn~~gg~~l~~~~e~~~~il~ 186 (354)
T 4ef8_A 111 FDFYLAYAAEQHDYGKKPLFLSMSG---LSMRENVEMCKRLAAVATEKGV-ILELNLSCPNVPGKPQVAYDFDAMRQCLT 186 (354)
T ss_dssp HHHHHHHHHHTCCTTTCCEEEEECC---SSHHHHHHHHHHHHHHHHHHCC-EEEEECSSCCSTTSCCGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecc---CCHHHHHHHHHHHhhhhhcCCC-EEEEeCCCCCCCCchhhccCHHHHHHHHH
Confidence 3344455555554 57888776643 34666655555555 45664 4433322 345432 1356666666
Q ss_pred HhhcC---CCCCcccCCCCCCHHHHHHHHHH-H--hC-CCcee----------------------------eC-----HH
Q 006673 506 ACENV---TQPLKFLYPLDVSIKEKIDTIAR-S--YG-ASGVE----------------------------YS-----EE 545 (636)
Q Consensus 506 a~e~~---~s~fk~LY~~~~~L~eKIetIA~-I--YG-A~~V~----------------------------~S-----~~ 545 (636)
++.+. |=-.|.--+. +. +.+..+|+ . +| ++.|. || +.
T Consensus 187 av~~~~~~PV~vKi~p~~--d~-~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~ 263 (354)
T 4ef8_A 187 AVSEVYPHSFGVKMPPYF--DF-AHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPT 263 (354)
T ss_dssp HHHHHCCSCEEEEECCCC--SH-HHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHH
T ss_pred HHHHhhCCCeEEEecCCC--CH-HHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchH
Confidence 65431 2113333222 33 34566666 3 44 66664 22 46
Q ss_pred HHHHHHHHHhCCCCCCCeeEe
Q 006673 546 AEKQIEMYTGQGFSGLPICMA 566 (636)
Q Consensus 546 A~kqLk~ie~lG~~~LPVCmA 566 (636)
+.+.+.++.+. .+++||+..
T Consensus 264 a~~~i~~v~~~-~~~ipII~~ 283 (354)
T 4ef8_A 264 ALANINAFYRR-CPGKLIFGC 283 (354)
T ss_dssp HHHHHHHHHHH-CTTSEEEEE
T ss_pred HHHHHHHHHHh-CCCCCEEEE
Confidence 77788888887 668898853
No 353
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=42.35 E-value=27 Score=38.13 Aligned_cols=41 Identities=5% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 441 RHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 441 kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
++.+.++.+++|+++++|+-.-......+.+.++.+..|..
T Consensus 125 ~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~~ 165 (528)
T 3tr5_A 125 KLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRIH 165 (528)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCCC
Confidence 45566778999999999998765444445566666677764
No 354
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=42.23 E-value=15 Score=38.75 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
++-|+|-||+.| |||||+-=|.+.| ...|+++
T Consensus 50 ~~~~vI~VtGTN------GKgSt~~~l~~iL-~~~G~~v 81 (437)
T 3nrs_A 50 PAPKIFTVAGTN------GKGTTCCTLEAIL-LAAGLRV 81 (437)
T ss_dssp SSSEEEEEECSS------SHHHHHHHHHHHH-HHTTCCE
T ss_pred ccCCEEEEECCc------ChHHHHHHHHHHH-HHCCCcE
Confidence 457899999996 9999999999999 4779885
No 355
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=42.09 E-value=57 Score=30.57 Aligned_cols=29 Identities=24% Similarity=0.182 Sum_probs=21.6
Q ss_pred HhhcCCcEEEEecCCCCCCHHHHHHHHHH
Q 006673 446 TKAYGANVVVAVNMFATDSKAELNAVRNA 474 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aEI~~v~e~ 474 (636)
..+.++|+++++|+....+..+++.++++
T Consensus 167 ~~~~~~p~~iv~NK~D~~~~~~~~~~~~~ 195 (262)
T 1yrb_A 167 DLRLGATTIPALNKVDLLSEEEKERHRKY 195 (262)
T ss_dssp HHHHTSCEEEEECCGGGCCHHHHHHHHHH
T ss_pred hcccCCCeEEEEecccccccccHHHHHHH
Confidence 34568999999999988777766555444
No 356
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=41.73 E-value=16 Score=34.54 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=24.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
++|++|.+.+. -|.||||+.--|+ .++.+ +...+||
T Consensus 18 ~~g~~i~i~G~----~GsGKSTl~~~L~-----~~~g~-v~~~~~~ 53 (230)
T 2vp4_A 18 TQPFTVLIEGN----IGSGKTTYLNHFE-----KYKND-ICLLTEP 53 (230)
T ss_dssp CCCEEEEEECS----TTSCHHHHHHTTG-----GGTTT-EEEECCT
T ss_pred CCceEEEEECC----CCCCHHHHHHHHH-----hccCC-eEEEecC
Confidence 56999999996 5999999654442 23332 4455665
No 357
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=41.50 E-value=20 Score=41.19 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.5
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.+.+|+| |.|.|||||...+...|-
T Consensus 371 ~~~~lI~G----ppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 371 RPLSLIQG----PPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp SSEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEc----CCCCCHHHHHHHHHHHHH
Confidence 46888888 789999999999998883
No 358
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=41.47 E-value=41 Score=29.24 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=39.2
Q ss_pred HHHHHHHHHh----hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC--eEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTK----AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF--DAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~----~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~--~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.++++.+. ..++|+|+++|+-.-..+.+.+.+.+........ .+-+-+.=++=|+|-.+|-+.+.+.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 103 TASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp HHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 4445555544 4789999999997643322223333332211111 111222335668888888888877764
No 359
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=41.23 E-value=14 Score=34.21 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.1
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
+++|.+|+. .|.||||++--|++
T Consensus 4 ~~~I~i~G~----~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGG----IGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHH
Confidence 568889885 69999998766654
No 360
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=40.77 E-value=1.1e+02 Score=30.84 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=60.5
Q ss_pred CHHHHHHHHhHHHHHHHHHh---hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc-------------cc
Q 006673 428 NVALVEAGCVNLARHIANTK---AYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH-------------AH 491 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~---~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~w-------------a~ 491 (636)
|.+.+..=+..+.+.+..+. .-++|++|=++- .-|++|+..+.+.+++.|+..+.+++.+ ..
T Consensus 186 ~~~~~~~il~~vr~~~~~~~~~~g~~~Pv~vKi~~--~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~ 263 (336)
T 1f76_A 186 YGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKIAP--DLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQT 263 (336)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSCCCEEEECCS--CCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCS
T ss_pred CHHHHHHHHHHHHHHHHhhhhcccccCceEEEecC--CCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccC
Confidence 34444444444444433221 126899997663 2356788888888999999766666653 13
Q ss_pred Cc-cc------hhHHHHHHHHHhhcCCCCCcccCCCC-CCHHHHHHHHHHHhCCCceeeCHHHHH
Q 006673 492 GG-KG------AVDLGIAVQRACENVTQPLKFLYPLD-VSIKEKIDTIARSYGASGVEYSEEAEK 548 (636)
Q Consensus 492 GG-eG------a~eLA~aVv~a~e~~~s~fk~LY~~~-~~L~eKIetIA~IYGA~~V~~S~~A~k 548 (636)
|| .| ..+++++|.+.+. .++..+-.-. .+.++=.+.+ ..|||.|........
T Consensus 264 gg~~g~~~~~~~~~~i~~i~~~~~---~~ipVi~~GGI~~~~da~~~l--~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 264 GGLSGRPLQLKSTEIIRRLSLELN---GRLPIIGVGGIDSVIAAREKI--AAGASLVQIYSGFIF 323 (336)
T ss_dssp SEEEEGGGHHHHHHHHHHHHHHHT---TSSCEEEESSCCSHHHHHHHH--HHTCSEEEESHHHHH
T ss_pred CCcCCchhHHHHHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHH--HCCCCEEEeeHHHHh
Confidence 34 23 2355666665542 1122222222 2333322223 258888877666543
No 361
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=40.65 E-value=31 Score=31.78 Aligned_cols=68 Identities=13% Similarity=0.011 Sum_probs=43.6
Q ss_pred HHHHHHHhhc--CCcEEEEecCCCCCCH--------------HHHHHHHHHHHHcCCCeEEEcCccccCccc-hhHHHHH
Q 006673 440 ARHIANTKAY--GANVVVAVNMFATDSK--------------AELNAVRNAAMAAGAFDAVVCSHHAHGGKG-AVDLGIA 502 (636)
Q Consensus 440 ~kHIeNi~~f--GvPvVVAINrF~tDT~--------------aEI~~v~e~c~~~Gv~~~avs~~wa~GGeG-a~eLA~a 502 (636)
...++.++++ ++|+|++.|+..-..+ ...+...++|++.|+..+..+. ++=|+| -.+|=+.
T Consensus 119 ~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S--A~~g~g~v~~lf~~ 196 (214)
T 3q3j_B 119 KKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS--AFTSEKSIHSIFRT 196 (214)
T ss_dssp THHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC--TTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec--cCCCcccHHHHHHH
Confidence 3344444444 8999999999764221 2234567788888883244433 566887 7788788
Q ss_pred HHHHhhc
Q 006673 503 VQRACEN 509 (636)
Q Consensus 503 Vv~a~e~ 509 (636)
+++.+.+
T Consensus 197 l~~~~~~ 203 (214)
T 3q3j_B 197 ASMLCLN 203 (214)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 8777754
No 362
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=40.59 E-value=36 Score=30.89 Aligned_cols=68 Identities=9% Similarity=-0.062 Sum_probs=36.2
Q ss_pred HHHHHHHHHh----hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC--------------CCeEEEcCccccCccchhHH
Q 006673 438 NLARHIANTK----AYGANVVVAVNMFATDSKAELNAVRNAAMAAG--------------AFDAVVCSHHAHGGKGAVDL 499 (636)
Q Consensus 438 NL~kHIeNi~----~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~G--------------v~~~avs~~wa~GGeGa~eL 499 (636)
++...++.+. ..++|+|++.|+-.-..+...+.+++++.... ...+-+-+.=++=|+|-.+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l 189 (198)
T 1f6b_A 110 ESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEG 189 (198)
T ss_dssp HHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHH
T ss_pred HHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHH
Confidence 4444444443 36899999999975432112233445544221 11122333345667887777
Q ss_pred HHHHHH
Q 006673 500 GIAVQR 505 (636)
Q Consensus 500 A~aVv~ 505 (636)
-+.+.+
T Consensus 190 ~~~l~~ 195 (198)
T 1f6b_A 190 FRWMAQ 195 (198)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 666654
No 363
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=40.53 E-value=25 Score=34.04 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.++++.+ |.|.||||++.-++..+
T Consensus 28 ~~G~i~~i~G----~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVS----PGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEc----CCCCCHHHHHHHHHHHH
Confidence 4589999998 67999999999888766
No 364
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=40.48 E-value=84 Score=26.97 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=40.0
Q ss_pred HHHHHhhcCCcEEEEecCCCCCC--HHHHHHHHHHHHHcCCC------eEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 442 HIANTKAYGANVVVAVNMFATDS--KAELNAVRNAAMAAGAF------DAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tDT--~aEI~~v~e~c~~~Gv~------~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+++.++..++|+++++|+..-.. .+++ .+..++.+.. .+.+-..=++=|+|-.+|-+.+++.++.
T Consensus 99 ~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 99 AINHAKAANVPIIVAINKMDKPEANPDRV---MQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp HHHHHGGGSCCEEEEEETTTSSCSCHHHH---HHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEECccCCcCCHHHH---HHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence 34556678999999999976543 2333 2222222210 0122233367789999999999988864
No 365
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=40.48 E-value=2.1e+02 Score=27.59 Aligned_cols=118 Identities=14% Similarity=0.051 Sum_probs=72.4
Q ss_pred HHHHhhcCCcEEEEe-------------cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 443 IANTKAYGANVVVAV-------------NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 443 IeNi~~fGvPvVVAI-------------NrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.+.++++++|+|..- -++..|...+...+.++..+.|.+.+++-. ....-+.+.++.+.+++++
T Consensus 89 ~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~---~~~~~~~~~~~~~~~~l~~ 165 (358)
T 3hut_A 89 GSIYGKEGMPQLSPTAAHPDYIKISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIG---VTTDWGLSSAQAFRKAFEL 165 (358)
T ss_dssp HHHHHHHTCCEEESSCCCGGGTTSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEE---ESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEecCCCCcccccCCCeEEEecCChHHHHHHHHHHHHHcCCCEEEEEe---cCcHHHHHHHHHHHHHHHH
Confidence 445667899998751 124456677888888998888988776652 3344556778888887765
Q ss_pred CCCCC--cccCCC-CCCHHHHHHHHHHHhCCCceee---CHHHHHHHHHHHhCCCCCCCeeE
Q 006673 510 VTQPL--KFLYPL-DVSIKEKIDTIARSYGASGVEY---SEEAEKQIEMYTGQGFSGLPICM 565 (636)
Q Consensus 510 ~~s~f--k~LY~~-~~~L~eKIetIA~IYGA~~V~~---S~~A~kqLk~ie~lG~~~LPVCm 565 (636)
..-++ ...|+. +.+...-++.+.. -+.+-|.+ .+.|..-++.+.++|+ +.|+..
T Consensus 166 ~g~~v~~~~~~~~~~~~~~~~~~~l~~-~~~d~i~~~~~~~~a~~~~~~~~~~g~-~~p~~~ 225 (358)
T 3hut_A 166 RGGAVVVNEEVPPGNRRFDDVIDEIED-EAPQAIYLAMAYEDAAPFLRALRARGS-ALPVYG 225 (358)
T ss_dssp TTCEEEEEEEECTTCCCCHHHHHHHHH-HCCSEEEEESCHHHHHHHHHHHHHTTC-CCCEEE
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHh-cCCCEEEEccCchHHHHHHHHHHHcCC-CCcEEe
Confidence 21111 112332 3444444444432 23444432 2377888899999999 578753
No 366
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=40.38 E-value=17 Score=32.60 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=28.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
.|+.+++.+ |.|.||||+...++..+. .-|++ ++.+....
T Consensus 35 ~g~~~~l~G----~~G~GKTtL~~~i~~~~~-~~g~~-~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWG----EEGAGKSHLLQAWVAQAL-EAGKN-AAYIDAAS 74 (149)
T ss_dssp CCSEEEEES----SSTTTTCHHHHHHHHHHH-TTTCC-EEEEETTT
T ss_pred CCCEEEEEC----CCCCCHHHHHHHHHHHHH-hcCCc-EEEEcHHH
Confidence 688888876 679999999999998884 34654 34444433
No 367
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=40.09 E-value=85 Score=31.87 Aligned_cols=95 Identities=19% Similarity=0.155 Sum_probs=66.1
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 511 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v-------~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~ 511 (636)
|++-|+..++|||+|. +..|-.|+.+. .++|+++|...+.+|+.+-+=. -.++.+.|-.+.+.
T Consensus 57 l~eki~l~~~~gV~v~------~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~--~~~~~~~I~~~~~~-- 126 (251)
T 1qwg_A 57 VKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDIS--LEERNNAIKRAKDN-- 126 (251)
T ss_dssp HHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCC--HHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHcCCeEE------CCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHHHC--
Confidence 7788999999999984 67776776555 6889999998777887665522 33444444444432
Q ss_pred CCCcccC---------CCCCCHHHHHHHHHH--HhCCCceeeCH
Q 006673 512 QPLKFLY---------PLDVSIKEKIDTIAR--SYGASGVEYSE 544 (636)
Q Consensus 512 s~fk~LY---------~~~~~L~eKIetIA~--IYGA~~V~~S~ 544 (636)
.|+.+. +...++.+-|+.+.+ =-||+.|....
T Consensus 127 -G~~v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEa 169 (251)
T 1qwg_A 127 -GFMVLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEG 169 (251)
T ss_dssp -TCEEEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECC
T ss_pred -CCEEeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 366555 234678899999988 77888876543
No 368
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=39.90 E-value=1e+02 Score=31.75 Aligned_cols=106 Identities=13% Similarity=0.124 Sum_probs=62.0
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCC-------CCCCHHHH-------HHHHHHHHHcC--CCeEEEcC
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMF-------ATDSKAEL-------NAVRNAAMAAG--AFDAVVCS 487 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF-------~tDT~aEI-------~~v~e~c~~~G--v~~~avs~ 487 (636)
+..++.+.-++.+..+++.|+..+.+|.+.||.-=-+ ..|.++.+ ..+.+++++.| +. +++-+
T Consensus 103 l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE~ 181 (394)
T 1xla_A 103 FTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSEYDGSKDLAAALDRMREGVDTAAGYIKDKGYNLR-IALEP 181 (394)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEECC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCccccccccCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEec
Confidence 4456777778999999999999999999998863222 23434433 34445566789 86 77766
Q ss_pred cccc-Ccc---chhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHH
Q 006673 488 HHAH-GGK---GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTI 531 (636)
Q Consensus 488 ~wa~-GGe---Ga~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetI 531 (636)
+.-+ +.. ...+-+..+++.+.. ++.+.+++|. ..++.+-|+..
T Consensus 182 ~~~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~i~~~ 234 (394)
T 1xla_A 182 KPNEPRGDIFLPTVGHGLAFIEQLEH-GDIVGLNPETGHEQMAGLNFTHGIAQA 234 (394)
T ss_dssp CSSSSSSEESSCSHHHHHHHHTTCTT-GGGEEECCBHHHHHTTTCCHHHHHHHH
T ss_pred CCCCCCccccCCCHHHHHHHHHHhCC-CCceEEEEecCcccccCCCHHHHHHHH
Confidence 6321 111 122333344444432 1237777664 23555545544
No 369
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=39.76 E-value=17 Score=33.09 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=21.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
+.|.++++++ |.|.||||++.-|+-
T Consensus 18 ~~G~~~~i~G----~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYG----PYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEEC----STTSSHHHHHHHHHH
T ss_pred cCCEEEEEEC----CCCCCHHHHHHHHHH
Confidence 5799999998 679999999887765
No 370
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=39.74 E-value=21 Score=37.20 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=28.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.+.+.|-||+.| |||||+-=|++.| ...|+++.
T Consensus 47 ~~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~~g 79 (422)
T 1w78_A 47 PAPFVFTVAGTN------GKGTTCRTLESIL-MAAGYKVG 79 (422)
T ss_dssp CSSEEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCCcEEEEeCCc------ChHHHHHHHHHHH-HHCCCCEE
Confidence 346899999986 9999999999999 57888864
No 371
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=39.70 E-value=46 Score=28.22 Aligned_cols=57 Identities=11% Similarity=-0.003 Sum_probs=33.2
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+|+++|+-.-..+.+.+.+.+... +.+.. +. +.=++=|+|-.+|-+.+++.+.
T Consensus 100 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 100 RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWY-IQ--ATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE-EE--ECBTTTTBTHHHHHHHHHHHC-
T ss_pred cCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEE-EE--EcccCCCcCHHHHHHHHHHHHh
Confidence 4899999999976544322222322211 11222 22 2335678888888888887764
No 372
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=39.60 E-value=15 Score=40.55 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=25.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+-||.| |.|.|||||.+-+...| -+-|++..+|
T Consensus 207 ~~lI~G----PPGTGKT~ti~~~I~~l-~~~~~~ILv~ 239 (646)
T 4b3f_X 207 LAIIHG----PPGTGKTTTVVEIILQA-VKQGLKVLCC 239 (646)
T ss_dssp EEEEEC----CTTSCHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred ceEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEEEE
Confidence 778877 78999999999998888 3557665444
No 373
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=39.52 E-value=17 Score=34.83 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..++.|++||. -|.||||.+-=|++.+
T Consensus 27 ~~~~~I~l~G~----~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGA----PGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECC----TTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECC----CCCCHHHHHHHHHHHh
Confidence 35789999984 6999999998887766
No 374
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=39.41 E-value=51 Score=31.75 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=40.3
Q ss_pred HHHHhhc--CCcEEEEecCCCCCC-HHH-------------HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHH
Q 006673 443 IANTKAY--GANVVVAVNMFATDS-KAE-------------LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRA 506 (636)
Q Consensus 443 IeNi~~f--GvPvVVAINrF~tDT-~aE-------------I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a 506 (636)
++.++.+ ++|+|+++|+..-.. .+. .+...+++++.|...+..+. ++=|+|-.+|-+.+++.
T Consensus 250 ~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S--a~~~~gi~~l~~~l~~~ 327 (332)
T 2wkq_A 250 YPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS--ALTQRGLKTVFDEAIRA 327 (332)
T ss_dssp HHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC--TTTCTTHHHHHHHHHHH
T ss_pred HHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEec--CCCCcCHHHHHHHHHHH
Confidence 4444444 899999999975321 111 23456677777763244433 45678888888887776
Q ss_pred hh
Q 006673 507 CE 508 (636)
Q Consensus 507 ~e 508 (636)
+-
T Consensus 328 ~~ 329 (332)
T 2wkq_A 328 VL 329 (332)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 375
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=39.38 E-value=24 Score=36.89 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|.+|.+.+ |-|.|||||.--|+--+. .-+.+..
T Consensus 155 ~~g~vi~lvG----~nGsGKTTll~~Lag~l~-~~~G~V~ 189 (359)
T 2og2_A 155 RKPAVIMIVG----VNGGGKTTSLGKLAHRLK-NEGTKVL 189 (359)
T ss_dssp SSSEEEEEEC----CTTSCHHHHHHHHHHHHH-HTTCCEE
T ss_pred CCCeEEEEEc----CCCChHHHHHHHHHhhcc-ccCCEEE
Confidence 4588999988 689999999988887773 4455544
No 376
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=39.28 E-value=24 Score=37.47 Aligned_cols=40 Identities=30% Similarity=0.373 Sum_probs=29.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lReP 112 (636)
..|.+|+|++ |-|.|||||.-.|..-++ .- ...+..+=+|
T Consensus 165 ~~ggii~I~G----pnGSGKTTlL~allg~l~-~~-~g~I~~~ed~ 204 (418)
T 1p9r_A 165 RPHGIILVTG----PTGSGKSTTLYAGLQELN-SS-ERNILTVEDP 204 (418)
T ss_dssp SSSEEEEEEC----STTSCHHHHHHHHHHHHC-CT-TSCEEEEESS
T ss_pred hcCCeEEEEC----CCCCCHHHHHHHHHhhcC-CC-CCEEEEeccc
Confidence 5688999998 559999999999988884 32 3346666555
No 377
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=39.28 E-value=14 Score=34.13 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~a 96 (636)
+.|.++++.+ |.|.||||+..-|+-.
T Consensus 22 ~~G~~~~i~G----~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFG----EFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEEC----CTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEC----CCCCcHHHHHHHHHHH
Confidence 5699999998 6799999999887654
No 378
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=39.22 E-value=18 Score=36.50 Aligned_cols=31 Identities=26% Similarity=0.264 Sum_probs=26.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.++|-||+.+ ||||||-=|++.| ...|+++.
T Consensus 108 ~~~IaVTGTn------GKTTTt~ll~~iL-~~~g~~~~ 138 (326)
T 3eag_A 108 HWVLGVAGTH------GKTTTASMLAWVL-EYAGLAPG 138 (326)
T ss_dssp SEEEEEESSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 5689999986 9999999999999 57898753
No 379
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=39.17 E-value=14 Score=38.28 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.++|+|++. .|.||||++.-|++.++
T Consensus 5 ~~~i~i~Gp----tGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGP----TAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECC----TTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECC----CCCCHHHHHHHHHHHcC
Confidence 468888884 59999999999988773
No 380
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=39.07 E-value=2e+02 Score=25.28 Aligned_cols=72 Identities=8% Similarity=-0.003 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhhcCCcEEEEecCCCCC-C---HHH-HHHHHHHHHHcCCCeEEEcC----------ccccC----ccchh
Q 006673 437 VNLARHIANTKAYGANVVVAVNMFATD-S---KAE-LNAVRNAAMAAGAFDAVVCS----------HHAHG----GKGAV 497 (636)
Q Consensus 437 ~NL~kHIeNi~~fGvPvVVAINrF~tD-T---~aE-I~~v~e~c~~~Gv~~~avs~----------~wa~G----GeGa~ 497 (636)
.||.+-|+.+++.|.++|+.--..|.+ . -++ -+.+++.|++.|+. ++-.. .+.|| -+|..
T Consensus 86 ~~l~~li~~~~~~~~~vil~~~~~p~~~~~~~~~~~n~~~~~~a~~~~v~-~iD~~~~~~~~~~~~~~~Dg~Hpn~~G~~ 164 (190)
T 1ivn_A 86 QTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP-LLPFFMEEVYLKPQWMQDDGIHPNRDAQP 164 (190)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCCCGGGCHHHHHHHHHHHHHHHHHTTCC-EECCTHHHHHTCGGGBCTTSSSBCGGGHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeccCCcchhHHHHHHHHHHHHHHHHHcCCe-EEccHHhhccCCchhhcCCCCCCCHHHHH
Confidence 367777888888787765542122322 1 122 34678889999986 44211 11233 46777
Q ss_pred HHHHHHHHHhhc
Q 006673 498 DLGIAVQRACEN 509 (636)
Q Consensus 498 eLA~aVv~a~e~ 509 (636)
.+|+.+.+.+.+
T Consensus 165 ~~a~~i~~~l~~ 176 (190)
T 1ivn_A 165 FIADWMAKQLQP 176 (190)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 888888888754
No 381
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=38.85 E-value=63 Score=30.61 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=53.2
Q ss_pred CHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHH---H-HcCCCeEEEcCccccCcc-c-hhHHHH
Q 006673 428 NVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAA---M-AAGAFDAVVCSHHAHGGK-G-AVDLGI 501 (636)
Q Consensus 428 NleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c---~-~~Gv~~~avs~~wa~GGe-G-a~eLA~ 501 (636)
|.+..++.+..++++|+-.+.+|.++||.-=-+. +.+.-++.+++.+ + +.|+. +++-+++..|.. + ..+-+.
T Consensus 79 ~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~-~~~~~~~~l~~l~~~a~~~~gv~-l~lEn~~~~~~~~~~~~~~~~ 156 (270)
T 3aam_A 79 EGELWEKSVASLADDLEKAALLGVEYVVVHPGSG-RPERVKEGALKALRLAGVRSRPV-LLVENTAGGGEKVGARFEELA 156 (270)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBS-CHHHHHHHHHHHHHHHTCCSSSE-EEEECCCCCTTBSCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCC-CHHHHHHHHHHHHHhhcccCCCE-EEEecCCCCCCccCCCHHHHH
Confidence 4456778899999999999999999998532222 2133344455444 3 46886 888888655443 2 333333
Q ss_pred HHHHHhhcCCCCCcccCC
Q 006673 502 AVQRACENVTQPLKFLYP 519 (636)
Q Consensus 502 aVv~a~e~~~s~fk~LY~ 519 (636)
.+++.+ ++.++||
T Consensus 157 ~l~~~v-----~vg~~lD 169 (270)
T 3aam_A 157 WLVADT-----PLQVCLD 169 (270)
T ss_dssp HHHTTS-----SCEEEEE
T ss_pred HHHHhC-----CEEEEEe
Confidence 444333 5777776
No 382
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=38.80 E-value=57 Score=30.14 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=43.0
Q ss_pred HHHHHhhc--CCcEEEEecCCCCCC-----HHHHHHHHHHHHHcC--CCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 442 HIANTKAY--GANVVVAVNMFATDS-----KAELNAVRNAAMAAG--AFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 442 HIeNi~~f--GvPvVVAINrF~tDT-----~aEI~~v~e~c~~~G--v~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
-++.++.. ++|+||++|+-.-.. +++.+.+.+++...| .. +. ++=++-|+|-.+|-+.+++.+.
T Consensus 132 ~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~SA~~g~gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 132 LFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK-FS--SFSTLTGVGVEQAKITACELLK 204 (228)
T ss_dssp HHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE-EE--ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce-EE--EEecccCCCHHHHHHHHHHHHH
Confidence 34555555 899999999975433 233446677777776 43 33 3346778888888888877764
No 383
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=38.59 E-value=24 Score=36.37 Aligned_cols=42 Identities=33% Similarity=0.317 Sum_probs=27.8
Q ss_pred EeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccc
Q 006673 74 VGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (636)
Q Consensus 74 VTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNL 140 (636)
|++|. =|-|.||||++--|..-|. . .| ++|...+++||.+.+
T Consensus 94 iigI~-GpsGSGKSTl~~~L~~ll~-~----------~~-------------~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 94 IIGIA-GSVAVGKSTTSRVLKALLS-R----------WP-------------DHPNVEVITTDGFLY 135 (321)
T ss_dssp EEEEE-CCTTSSHHHHHHHHHHHHT-T----------ST-------------TCCCEEEEEGGGGBC
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhc-c----------cC-------------CCCeEEEEeeccccc
Confidence 34443 3779999999987765552 1 12 245578899998764
No 384
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=38.54 E-value=15 Score=35.25 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=20.7
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
.+|.||+ |.|.||||++--|++.|+
T Consensus 23 ~iI~I~G----~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSG----GTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEEC----STTSSHHHHHHHHHHHTT
T ss_pred EEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4688887 479999999999988774
No 385
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=38.44 E-value=69 Score=30.21 Aligned_cols=80 Identities=20% Similarity=0.128 Sum_probs=44.4
Q ss_pred HHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCCCC
Q 006673 443 IANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYPLD 521 (636)
Q Consensus 443 IeNi~~fGvPvV-VAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~~~ 521 (636)
++.+++.|++.+ |.+|++...+.. ..+.+.++..|.+ +. ...-. -..+.++.... .. -+.|..+
T Consensus 154 ~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~---------~~~~~~a~~~g-~~-v~~~~~~ 218 (263)
T 1hyq_A 154 KIVAERLGTKVLGVVVNRITTLGIE--MAKNEIEAILEAK-VI-GLIPE---------DPEVRRAAAYG-KP-VVLRSPN 218 (263)
T ss_dssp HHHHHHHTCEEEEEEEEEECTTTHH--HHHHHHHHHTTSC-EE-EEEEC---------CHHHHHHHHHT-SC-HHHHCTT
T ss_pred HHHHHhcCCCeeEEEEccCCccccc--chHHHHHHHhCCC-eE-EECCC---------CHHHHHHHHcC-Cc-eEEcCCC
Confidence 334444466654 889999887765 4456666667775 32 21111 12333333332 11 2234556
Q ss_pred CCHHHHHHHHHH-HhCC
Q 006673 522 VSIKEKIDTIAR-SYGA 537 (636)
Q Consensus 522 ~~L~eKIetIA~-IYGA 537 (636)
.+..+-++.+|+ +.+.
T Consensus 219 ~~~~~~~~~la~~l~~~ 235 (263)
T 1hyq_A 219 SPAARAIVELANYIAGG 235 (263)
T ss_dssp SHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 678888999999 8664
No 386
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=38.44 E-value=14 Score=33.33 Aligned_cols=25 Identities=40% Similarity=0.539 Sum_probs=19.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|++|.+++ |-|.||||+.--|++.+
T Consensus 2 g~ii~l~G----~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITG----PAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEEC----STTSSHHHHHHHHHHHS
T ss_pred CeEEEEEC----CCCCcHHHHHHHHhccc
Confidence 55777777 46999999988886533
No 387
>3dc7_A Putative uncharacterized protein LP_3323; NESG LPR109 X-RAY LP_3323, structural genomics, PSI-2, prote structure initiative; 2.12A {Lactobacillus plantarum} SCOP: c.23.10.9
Probab=38.16 E-value=1.9e+02 Score=26.34 Aligned_cols=105 Identities=8% Similarity=0.064 Sum_probs=57.9
Q ss_pred CCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhc--CCcEEEEecCCC-CC----
Q 006673 391 LTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAY--GANVVVAVNMFA-TD---- 463 (636)
Q Consensus 391 l~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~f--GvPvVVAINrF~-tD---- 463 (636)
.+||.|||-.-.--+.. +.+. .++...+.+..+. ||.+=|+.+++. +.++|+..--.. .+
T Consensus 81 ~~pd~Vii~~G~ND~~~--~~~~--------~~~~~~~~~~f~~---~l~~li~~l~~~~P~~~iil~~p~~~~~~~~~~ 147 (232)
T 3dc7_A 81 EDADFIAVFGGVNDYGR--DQPL--------GQYGDCDMTTFYG---ALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGS 147 (232)
T ss_dssp TTCSEEEEECCHHHHHT--TCCC--------CCTTCCSTTSHHH---HHHHHHHHHHHHCTTSCEEEEECCCCCSCSBTT
T ss_pred CCCCEEEEEEecccccc--CcCC--------ccccccchHHHHH---HHHHHHHHHHHhCCCCeEEEEeCcccCCccCCc
Confidence 47998877653333332 2221 2222233333433 666667777775 788887433211 11
Q ss_pred ----C-------HHHHHHHHHHHHHcCCCeEEE-cCcc--------------cc----CccchhHHHHHHHHHhhc
Q 006673 464 ----S-------KAELNAVRNAAMAAGAFDAVV-CSHH--------------AH----GGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 464 ----T-------~aEI~~v~e~c~~~Gv~~~av-s~~w--------------a~----GGeGa~eLA~aVv~a~e~ 509 (636)
+ ++=-+.+++.|++.|+. ++- ...| .| -.+|-..+|+.+.+.+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~i~~~a~~~~v~-~iD~~~~~~~~~~~~~~~~~~~~DgvHpn~~G~~~iA~~i~~~l~~ 222 (232)
T 3dc7_A 148 FSAVTNGLGYRQSDYEAAIAQMTADYGVP-HLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDS 222 (232)
T ss_dssp BCSSCCTTSCCHHHHHHHHHHHHHHHTCC-EEEHHHHSSCCTTSHHHHHHHBSSSSSBCHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHcCCc-EEecccccCCCccchhhhhhccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 1 34456778899999986 432 1111 11 135677788888888764
No 388
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=38.02 E-value=24 Score=40.54 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=25.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.+.||.| |.|.|||||...+...|-..-+++..+
T Consensus 375 ~~~~lI~G----ppGTGKT~~i~~~i~~l~~~~~~~ILv 409 (802)
T 2xzl_A 375 RPLSLIQG----PPGTGKTVTSATIVYHLSKIHKDRILV 409 (802)
T ss_dssp CSEEEEEC----STTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred CCCEEEEC----CCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 56888988 899999999999887773223444433
No 389
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=37.99 E-value=50 Score=29.11 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=17.7
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHH
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNA 474 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~ 474 (636)
.++|++|++|+..-..+.+++.+.+.
T Consensus 155 ~~~p~ilv~nK~Dl~~~~~~~~~~~~ 180 (193)
T 2ged_A 155 NGIDILIACNKSELFTARPPSKIKDA 180 (193)
T ss_dssp TCCCEEEEEECTTSTTCCCHHHHHHH
T ss_pred cCCCEEEEEEchHhcCCCCHHHHHHH
Confidence 58999999999875444444444443
No 390
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=37.97 E-value=13 Score=32.20 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..++-|+++| |.|.||||++..+++.+.
T Consensus 41 ~~~~~~ll~G----~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIG----EPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 3456788887 569999999999999984
No 391
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=37.96 E-value=32 Score=31.80 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
+.|.++.+.+ |-|.||||+..-|+.
T Consensus 28 ~~G~~~~l~G----pnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTG----GTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEEC----CTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEe----CCCCCHHHHHHHHHH
Confidence 5699999988 569999999987763
No 392
>3rjt_A Lipolytic protein G-D-S-L family; PSI-biology, midwest center for structural genomics, MCSG, H; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=37.93 E-value=2.1e+02 Score=25.12 Aligned_cols=125 Identities=13% Similarity=0.141 Sum_probs=62.3
Q ss_pred ccccCCchHHHHHHHHhhcCCCCeEEeeccccccc---cchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCC
Q 006673 342 NIAHGNSSIVADKIALKLVGPGGFVVTEAGFGADI---GAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGK 418 (636)
Q Consensus 342 NIAhG~nSviAt~~aLklag~~dyvVTEAGFGaDl---GaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~ 418 (636)
+-.+|-...++.++.-...+ .++.|.-.|++-+- ..++|.. .....+||.|||-.-.--+........
T Consensus 34 ~~~~~~~~~l~~~l~~~~~~-~~~~~~n~g~~G~~~~~~~~~~~~---~~~~~~pd~vvi~~G~ND~~~~~~~~~----- 104 (216)
T 3rjt_A 34 GLGNGYVALVDAHLQVLHPD-WRIRVVNVGTSGNTVADVARRWED---DVMALQPDYVSLMIGVNDVWRQFDMPL----- 104 (216)
T ss_dssp TTCSSHHHHHHHHHHHHCGG-GCCEEEECCCTTCCHHHHHHHHHH---HTGGGCCSEEEEECCHHHHHHHHHSTT-----
T ss_pred ccCccHHHHHHHHHHhhCCC-CCeEEEECCCCCccHHHHHHHHHh---HHhhcCCCEEEEEeeccccchhhcccc-----
Confidence 33445555666666655431 13556666665432 1222221 122356998888653322221100000
Q ss_pred CCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCCCC--------HHHHHHHHHHHHHcCCC
Q 006673 419 PLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMFATDS--------KAELNAVRNAAMAAGAF 481 (636)
Q Consensus 419 pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~tDT--------~aEI~~v~e~c~~~Gv~ 481 (636)
... ....++..++ ||.+-|+.+++.|.++|+.- ...+... .+=-+.+++.|++.|+.
T Consensus 105 --~~~-~~~~~~~~~~---~l~~~i~~~~~~~~~vil~~p~~~~~~~~~~~~~~~~~~n~~~~~~a~~~~~~ 170 (216)
T 3rjt_A 105 --VVE-RHVGIDEYRD---TLRHLVATTKPRVREMFLLSPFYLEPNRSDPMRKTVDAYIEAMRDVAASEHVP 170 (216)
T ss_dssp --CGG-GCCCHHHHHH---HHHHHHHHHGGGSSEEEEECCCCCCCCTTSHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred --ccc-cCCCHHHHHH---HHHHHHHHHHhcCCeEEEECCCcCCCCcchHHHHHHHHHHHHHHHHHHHcCCe
Confidence 000 1233555544 67777888888898888873 2222221 11235667888888986
No 393
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=37.82 E-value=16 Score=35.99 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=22.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
|+.|.+++. .|.||||++--|++.|+
T Consensus 48 g~~i~l~G~----~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGM----MGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECS----TTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECC----CCCCHHHHHHHHHHhcC
Confidence 888999996 59999999988888773
No 394
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=37.62 E-value=58 Score=30.64 Aligned_cols=57 Identities=11% Similarity=-0.019 Sum_probs=38.3
Q ss_pred cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+|++.|+-.-..+. ..+..++++.+.++. +..+ =|+=|+|-.+|-+.+++.+.
T Consensus 144 ~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~-~~e~--SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 144 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCK-FIET--SAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCE-EEEE--eCCCCCCHHHHHHHHHHHHH
Confidence 489999999997643211 123345566777774 4433 35678999998888887764
No 395
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=37.43 E-value=54 Score=31.13 Aligned_cols=70 Identities=13% Similarity=0.081 Sum_probs=45.7
Q ss_pred HhHHHHHHHHHhh---cCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 436 CVNLARHIANTKA---YGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 436 ~~NL~kHIeNi~~---fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
|.|+.+.++.+++ -++|+|++-|+-.-..+. ..+...++|++.|+. +..+ =|+=|+|-.++=+.+++.+.
T Consensus 101 f~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~-~~e~--SAktg~nV~e~F~~i~~~i~ 175 (216)
T 4dkx_A 101 FQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVM-FIET--SAKAGYNVKQLFRRVAAALP 175 (216)
T ss_dssp HHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCE-EEEE--BTTTTBSHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCe-eEEE--eCCCCcCHHHHHHHHHHHHH
Confidence 4455555555543 579999999996543221 234567888999986 4433 36778998888777777664
No 396
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=37.21 E-value=21 Score=33.79 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.3
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+.|..|.+++. .|.||||++--|++-|
T Consensus 13 ~~~~~~i~i~G~----~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGP----ASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECS----SCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECC----CCCCHHHHHHHHHHHc
Confidence 466889999985 6999999887776655
No 397
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=37.11 E-value=32 Score=33.49 Aligned_cols=67 Identities=7% Similarity=-0.036 Sum_probs=40.9
Q ss_pred HHHhhcCCcEEEEecCCCCCCHHH--HHHHHHHHHHcCCCeEEEcCccccC---ccchhHHHHHHHHHhhcC
Q 006673 444 ANTKAYGANVVVAVNMFATDSKAE--LNAVRNAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACENV 510 (636)
Q Consensus 444 eNi~~fGvPvVVAINrF~tDT~aE--I~~v~e~c~~~Gv~~~avs~~wa~G---GeGa~eLA~aVv~a~e~~ 510 (636)
+.++..+.|+|+++|+..-..+.+ .+.+++.....+...+.++..-+.+ |.|-.+|-+.+.+.+...
T Consensus 192 ~~~~~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 192 KEVDPEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp HHHCSSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred HHhCCCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 345568999999999987533332 3333321112223324455555566 888889988888887653
No 398
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=37.10 E-value=30 Score=31.60 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=0.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
+.|+|++ +.|.||||+..-|...+..+ .+-+++.
T Consensus 31 ~~i~i~G----~~g~GKTTl~~~l~~~~~~~-~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMG----AIGSGKTLLIERTIERIGNE-VKIGAML 64 (221)
T ss_dssp EEEEEEE----CTTSCHHHHHHHHHHHHTTT-SCEEEEE
T ss_pred eEEEEEc----CCCCCHHHHHHHHHHHhccC-CeEEEEe
No 399
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1
Probab=37.02 E-value=33 Score=33.97 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=48.6
Q ss_pred cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHH
Q 006673 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVR 472 (636)
Q Consensus 393 P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~ 472 (636)
-|.+-+|.-+.+||-. . ++.-.+++.++.+-+ ...++||++.--.. |++|+....
T Consensus 80 AdEID~Vinig~~~~g--~----------~~~v~~ei~~v~~a~----------~~~~lKvIlEt~~L---t~eei~~a~ 134 (226)
T 1vcv_A 80 ADEIDVVAPIGLVKSR--R----------WAEVRRDLISVVGAA----------GGRVVKVITEEPYL---RDEERYTLY 134 (226)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT----------TTSEEEEECCGGGC---CHHHHHHHH
T ss_pred CCEEEEecchhhhcCC--C----------HHHHHHHHHHHHHHH----------cCCCceEEEeccCC---CHHHHHHHH
Confidence 6778888888888632 1 222233344433332 23567777655444 589999999
Q ss_pred HHHHHcCCCeEEEcCccc
Q 006673 473 NAAMAAGAFDAVVCSHHA 490 (636)
Q Consensus 473 e~c~~~Gv~~~avs~~wa 490 (636)
+.|.++|+..+-.|+.|.
T Consensus 135 ~ia~eaGADfVKTSTGf~ 152 (226)
T 1vcv_A 135 DIIAEAGAHFIKSSTGFA 152 (226)
T ss_dssp HHHHHHTCSEEECCCSCC
T ss_pred HHHHHcCCCEEEeCCCCC
Confidence 999999997555678898
No 400
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=36.97 E-value=69 Score=29.91 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=57.8
Q ss_pred HHHHHHhHHHHHHHHHhhcCCcEEEEe-cCCCC--CCHH-------HHHHHHHHHHHcCCCeEEEcCcccc---Cc-cch
Q 006673 431 LVEAGCVNLARHIANTKAYGANVVVAV-NMFAT--DSKA-------ELNAVRNAAMAAGAFDAVVCSHHAH---GG-KGA 496 (636)
Q Consensus 431 aL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF~t--DT~a-------EI~~v~e~c~~~Gv~~~avs~~wa~---GG-eGa 496 (636)
.-++....+++.|+..+.+|.+.||.- ..++. ++++ -++.+.+.|++.|+. +++-++-.. +. -..
T Consensus 79 ~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~~~~~~~ 157 (260)
T 1k77_A 79 REHEAHADIDLALEYALALNCEQVHVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKR-ILVEALSPGVKPHYLFSS 157 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSEEECCCCBCCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSCCS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEEeCCccCCCcCccCC
Confidence 345667889999999999999999873 33332 2333 234445556678996 777666221 11 122
Q ss_pred hHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHHH
Q 006673 497 VDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIAR 533 (636)
Q Consensus 497 ~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA~ 533 (636)
.+-+.++++.+.. .++.+.+|. ..++.+=|++...
T Consensus 158 ~~~~~~l~~~~~~--~~~g~~~D~~h~~~~~~d~~~~l~~~~~ 198 (260)
T 1k77_A 158 QYQALAIVEEVAR--DNVFIQLDTFHAQKVDGNLTHLIRDYAG 198 (260)
T ss_dssp HHHHHHHHHHHCC--TTEEEEEEHHHHHHHTCCHHHHHHHTTT
T ss_pred HHHHHHHHHHhCC--CCEEEEeeHHHHHhhCCCHHHHHHHhhh
Confidence 3334555555532 347776653 2344444544443
No 401
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=36.89 E-value=1.5e+02 Score=31.50 Aligned_cols=75 Identities=17% Similarity=0.105 Sum_probs=53.2
Q ss_pred HHHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 430 ALVEAGCVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 430 eaL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+.+..|..-|......+ ...|.|+++|+-.-.+.+.++.+++.+++.|.. +..++ +.=|+|-.+|.+.+.+.+.+
T Consensus 251 ~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~-vi~iS--A~~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 251 KTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEEEAVKALADALAREGLA-VLPVS--ALTGAGLPALKEALHALVRS 325 (416)
T ss_dssp HHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSC-EEECC--TTTCTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhHHHHHHHHHHHHhcCCe-EEEEE--CCCccCHHHHHHHHHHHHHh
Confidence 45555554444432222 358999999998887777778888888877876 55444 34578999999999999875
No 402
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=36.58 E-value=81 Score=30.76 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=23.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeEEEcCccc
Q 006673 463 DSKAELNAVRNAAMAAGAFDAVVCSHHA 490 (636)
Q Consensus 463 DT~aEI~~v~e~c~~~Gv~~~avs~~wa 490 (636)
+++++++.|.++|++.|+. +++-++|+
T Consensus 190 ~~~~~l~~i~~~~~~~~~~-li~De~~~ 216 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVL-LIIDEVQT 216 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCE-EEEECTTT
T ss_pred CCHHHHHHHHHHHHHhCCE-EEEecccc
Confidence 8899999999999999985 77777766
No 403
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=36.53 E-value=60 Score=34.25 Aligned_cols=67 Identities=10% Similarity=0.098 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCC--H-HHHHHHHHHHHHcCCCeEEEcC-ccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDS--K-AELNAVRNAAMAAGAFDAVVCS-HHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT--~-aEI~~v~e~c~~~Gv~~~avs~-~wa~GGeGa~eLA~aVv~a~e 508 (636)
-+++|++-+|.+||-++ |+|.|..|. + .-++.+.+.+++.|.. +..+- .|. |.....+.+.|...++
T Consensus 105 v~~~h~~~Ak~aGIDgf-~l~w~~~~~~~d~~~l~~~l~aA~~~~~k-~~f~~~~~~--~~~~~~~~~di~~li~ 175 (380)
T 4ad1_A 105 ILTKHMDMFVMARTGVL-ALTWWNEQDETEAKRIGLILDAADKKKIK-VCFHLEPYP--SRNVQNLRENIVKLIT 175 (380)
T ss_dssp HHHHHHHHHHHHTEEEE-EEEECCCCSHHHHHHHHHHHHHHHHTTCE-EEEEECCCT--TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEE-EEEecCCCCcccHHHHHHHHHHHHHcCCe-EEEEECCCC--CCChHHHHHHHHHHHH
Confidence 58899999999999865 688998774 4 4477788888888886 55542 342 3444556666666554
No 404
>1vi1_A Fatty acid/phospholipid synthesis protein PLSX; structural genomics, unknown function; HET: MSE; 2.95A {Bacillus subtilis} SCOP: c.77.1.4
Probab=36.45 E-value=7.9 Score=40.28 Aligned_cols=26 Identities=27% Similarity=0.133 Sum_probs=23.2
Q ss_pred EcccCc-------cccccCCchHHHHHHHHhhc
Q 006673 335 VHAGPF-------ANIAHGNSSIVADKIALKLV 360 (636)
Q Consensus 335 VHgGPF-------ANIAhG~nSviAt~~aLkla 360 (636)
-||||| .++.||.+|.-+-.-|++++
T Consensus 280 ~~gga~llG~~~pvi~~~g~a~~~~i~~ai~~A 312 (345)
T 1vi1_A 280 NYGGASLFGLKAPVIKAHGSSDSNAVFRAIRQA 312 (345)
T ss_dssp GSCCEEEETBSSCEEECCTTCCHHHHHHHHHHH
T ss_pred ccccceeecCCccEEEeCCCCCHHHHHHHHHHH
Confidence 699999 89999999998888888776
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=36.37 E-value=11 Score=32.70 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
...+-||+++ |.|.||||++..+++.+.
T Consensus 41 ~~~~~vll~G----~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLG----DPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEES----CGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4466788887 569999999999999984
No 406
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=36.33 E-value=89 Score=26.52 Aligned_cols=58 Identities=14% Similarity=0.004 Sum_probs=34.7
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHH-----HHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNA-----AMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~-----c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++|++|++|+-.-..+.+.+.+.+. +.+.++. +. +.=++=|+|-.+|-+.+++.+.+
T Consensus 107 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 107 RKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQ-IF--KTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEE-EE--ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceE-EE--ECcCCCCcCHHHHHHHHHHHHhh
Confidence 68999999999765433222222222 2223332 33 33356678888888888877753
No 407
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=36.31 E-value=14 Score=33.42 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=18.8
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+|.+|+ |.|.||||++--|++.|
T Consensus 4 ~i~i~G----~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDG----PSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEEC----CCCCCHHHHHHHHHHhc
Confidence 677777 47999999998887766
No 408
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=36.23 E-value=53 Score=31.49 Aligned_cols=60 Identities=17% Similarity=0.034 Sum_probs=40.3
Q ss_pred cCCcEEEEecCCCC--CC-HHHH-----HHHHHHHHHcCCCeEEEcCccccC---ccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFAT--DS-KAEL-----NAVRNAAMAAGAFDAVVCSHHAHG---GKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~t--DT-~aEI-----~~v~e~c~~~Gv~~~avs~~wa~G---GeGa~eLA~aVv~a~e~ 509 (636)
.+.|+||++|+-.- ++ ++.+ +.+++++++.|.+-+++++. +.+ ++|-.+|-++|.+.+.+
T Consensus 138 ~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~-~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 138 LKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNR-ATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp GGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTT-CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCC-CCccccHHHHHHHHHHHHHHHHH
Confidence 37899999998543 22 2222 33667777778863334433 333 78999999999999875
No 409
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.07 E-value=13 Score=33.68 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=18.0
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVG 92 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIG 92 (636)
+.|.++.+.+ |-|.||||+.--
T Consensus 7 ~~gei~~l~G----~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIG----SSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEEC----CTTSCHHHHHHH
T ss_pred CCCEEEEEEC----CCCCCHHHHHHH
Confidence 4588999988 569999998764
No 410
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=35.90 E-value=60 Score=29.06 Aligned_cols=66 Identities=12% Similarity=-0.023 Sum_probs=36.6
Q ss_pred HhHHHHHHHHHh--hcCCcEEEEecCCCCCC-------HHHH--HHHHHHHH----HcCCCeEEEcCccccCccchhHHH
Q 006673 436 CVNLARHIANTK--AYGANVVVAVNMFATDS-------KAEL--NAVRNAAM----AAGAFDAVVCSHHAHGGKGAVDLG 500 (636)
Q Consensus 436 ~~NL~kHIeNi~--~fGvPvVVAINrF~tDT-------~aEI--~~v~e~c~----~~Gv~~~avs~~wa~GGeGa~eLA 500 (636)
+.++.+.++.++ .-++|+||+.|+..--. ..++ +...++++ +.++. +..+.... +|-.++-
T Consensus 113 ~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~e~Sa~~---~~v~~~f 188 (196)
T 3llu_A 113 LTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLS-FYLTSIYD---HSIFEAF 188 (196)
T ss_dssp HHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEE-EEEECTTS---THHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcc-eEEEEech---hhHHHHH
Confidence 445555555553 35899999999976322 2222 12344555 45554 44444443 6666666
Q ss_pred HHHHH
Q 006673 501 IAVQR 505 (636)
Q Consensus 501 ~aVv~ 505 (636)
+.+++
T Consensus 189 ~~l~~ 193 (196)
T 3llu_A 189 SKVVQ 193 (196)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 411
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=35.84 E-value=30 Score=34.65 Aligned_cols=46 Identities=20% Similarity=0.322 Sum_probs=33.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFG 119 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FG 119 (636)
..|++.+.|+ |-|.||||-.++++.-. ..-|+++++ + +|+.+--+|
T Consensus 17 ~~g~l~v~~G----~MgsGKTT~lL~~~~r~-~~~g~kvli-~-kp~~D~Ryg 62 (234)
T 2orv_A 17 TRGQIQVILG----PMFSGKSTELMRRVRRF-QIAQYKCLV-I-KYAKDTRYS 62 (234)
T ss_dssp -CCEEEEEEC----CTTSCHHHHHHHHHHHH-HTTTCCEEE-E-EETTCCCC-
T ss_pred CceEEEEEEC----CCCCcHHHHHHHHHHHH-HHCCCeEEE-E-eecCCccch
Confidence 4699999998 57999999999997766 345666553 3 488775554
No 412
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=35.55 E-value=21 Score=35.88 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=26.0
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
++-|+++| |.|.|||+++.+++..+..+-|.++
T Consensus 152 ~~~lll~G----~~GtGKT~La~aia~~~~~~~g~~v 184 (308)
T 2qgz_A 152 QKGLYLYG----DMGIGKSYLLAAMAHELSEKKGVST 184 (308)
T ss_dssp CCEEEEEC----STTSSHHHHHHHHHHHHHHHSCCCE
T ss_pred CceEEEEC----CCCCCHHHHHHHHHHHHHHhcCCcE
Confidence 56788877 6799999999999999931557654
No 413
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}
Probab=35.51 E-value=2.9e+02 Score=28.72 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=55.4
Q ss_pred HHhHHHHHHHHH--hhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCc---cccCccc---hhHHHHHHHHH
Q 006673 435 GCVNLARHIANT--KAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSH---HAHGGKG---AVDLGIAVQRA 506 (636)
Q Consensus 435 G~~NL~kHIeNi--~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~---wa~GGeG---a~eLA~aVv~a 506 (636)
|++.+.+++... +.++.|++|=|+ .++.+|.....+.+++.|+.+++.-+. -.+|+.- ..++..+++++
T Consensus 111 G~~~~~~~l~~~~~~~~~~pvivsI~---g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~a 187 (345)
T 3oix_A 111 GINYYLDYVTELQKQPDSKNHFLSLV---GMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSE 187 (345)
T ss_dssp CHHHHHHHHHHHHHSTTCCCCEEEEC---CSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccCCCCEEEEec---CCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHH
Confidence 344444555543 358899888776 356888887777777778753433332 2345421 23666777777
Q ss_pred hhcCC-CC--CcccCCCCCCHHHHHHHHHHHhCCCcee
Q 006673 507 CENVT-QP--LKFLYPLDVSIKEKIDTIARSYGASGVE 541 (636)
Q Consensus 507 ~e~~~-s~--fk~LY~~~~~L~eKIetIA~IYGA~~V~ 541 (636)
+.+.- -+ .|.--+ .++ +.+..+|..-|+++|.
T Consensus 188 v~~~~~~PV~vKi~p~--~~~-~~~a~~~~~aga~~i~ 222 (345)
T 3oix_A 188 VFTYFTKPLGIKLPPY--FDI-VHFDQAAAIFNXYPLT 222 (345)
T ss_dssp HTTTCCSCEEEEECCC--CCH-HHHHHHHHHHTTSCCS
T ss_pred HHHHhCCCeEEEECCC--CCH-HHHHHHHHHhCCCceE
Confidence 75321 11 232222 233 3455555555666553
No 414
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=35.40 E-value=27 Score=38.39 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.6
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.+.+|++|+. .|.||||++.-|.+.|+ ..|++..
T Consensus 371 ~~~~I~l~G~----~GsGKSTia~~La~~L~-~~G~~~~ 404 (546)
T 2gks_A 371 QGFCVWLTGL----PCAGKSTIAEILATMLQ-ARGRKVT 404 (546)
T ss_dssp CCEEEEEECS----TTSSHHHHHHHHHHHHH-HTTCCEE
T ss_pred cceEEEccCC----CCCCHHHHHHHHHHHhh-hcCCeEE
Confidence 4788999985 69999999999999995 5565543
No 415
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=35.25 E-value=13 Score=38.58 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=36.0
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCC
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPS 113 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePS 113 (636)
...+.+|++-|+ -|.||||+.-=|.+.|+ -.|.+ ++++|+|+
T Consensus 83 ~~~~vlIvfEG~----DgAGKgt~Ik~L~e~Ld-prg~~-V~~~~~Pt 124 (304)
T 3czq_A 83 TGKRVMAVFEGR----DAAGKGGAIHATTANMN-PRSAR-VVALTKPT 124 (304)
T ss_dssp HCCCEEEEEEES----TTSSHHHHHHHHHTTSC-TTTEE-EEECCSCC
T ss_pred cCCCeEEEEeCC----CCCCHHHHHHHHHHHhc-ccCCe-EEEeCCcC
Confidence 356899999998 59999999999999995 56776 67899998
No 416
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=35.20 E-value=48 Score=32.22 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|.++++.| |-|.||||+..-|+-.+
T Consensus 33 ~~G~~~~i~G----~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 33 RGGEVIMVTS----GSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 5699999998 56999999998887666
No 417
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=34.73 E-value=37 Score=30.47 Aligned_cols=87 Identities=8% Similarity=0.025 Sum_probs=48.2
Q ss_pred hcCCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhH
Q 006673 359 LVGPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVN 438 (636)
Q Consensus 359 lag~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~N 438 (636)
+...+||||-+.+-+.+-.....+ +. -|.+|+|++-.. .. .++..
T Consensus 72 l~~~yD~viiD~~~~~~~~~~~~l----~~----ad~viiv~~~~~-------------------------~~--~~~~~ 116 (206)
T 4dzz_A 72 DLADYDFAIVDGAGSLSVITSAAV----MV----SDLVIIPVTPSP-------------------------LD--FSAAG 116 (206)
T ss_dssp HTTTSSEEEEECCSSSSHHHHHHH----HH----CSEEEEEECSCT-------------------------TT--HHHHH
T ss_pred hcCCCCEEEEECCCCCCHHHHHHH----HH----CCEEEEEecCCH-------------------------HH--HHHHH
Confidence 445579999998766533222222 11 466777773211 11 12334
Q ss_pred HHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 439 LARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 439 L~kHIeNi~~--fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
+.+.++.++. -++++-|.+|++...+.. .+.+++.+++.|.+
T Consensus 117 ~~~~l~~~~~~~~~~~~~vv~N~~~~~~~~-~~~~~~~l~~~~~~ 160 (206)
T 4dzz_A 117 SVVTVLEAQAYSRKVEARFLITRKIEMATM-LNVLKESIKDTGVK 160 (206)
T ss_dssp HHHHHHTTSCGGGCCEEEEEECSBCTTEEE-EHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeccCCCchH-HHHHHHHHHHcCCc
Confidence 4444544442 357889999999876541 22345666666764
No 418
>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*
Probab=34.61 E-value=24 Score=36.12 Aligned_cols=103 Identities=21% Similarity=0.256 Sum_probs=61.6
Q ss_pred CeEEeeccccccccchhccccccccCCCCcceE---EEEeeehhhhhcCCCCCccCCCCCcccccc------cCHHHH-H
Q 006673 364 GFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCA---VIVATIRALKMHGGGPQVVAGKPLDHAYLN------ENVALV-E 433 (636)
Q Consensus 364 dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~av---VlVaTvRALK~HGG~~~~~~g~pL~~~l~~------eNleaL-~ 433 (636)
||+||-.-|..|. .++|++ +||..|+.--.+ .-+++.+.+++-... .|..+|+++.+ .|.+++ +
T Consensus 175 df~iTQ~ffD~~~-~~~f~~-~~r~~Gi~vPIi~GImPi~s~~~~~~~~~~----~Gv~iP~~l~~~l~~~~~d~~~~~~ 248 (310)
T 3apt_A 175 DFAITQLFFNNAH-YFGFLE-RARRAGIGIPILPGIMPVTSYRQLRRFTEV----CGASIPGPLLAKLERHQDDPKAVLE 248 (310)
T ss_dssp SEEEECCCSCHHH-HHHHHH-HHHHTTCCSCEECEECCCCCTTHHHHHHHT----SCCCCCHHHHHHHHHSTTCHHHHHH
T ss_pred CEEEecccCCHHH-HHHHHH-HHHHcCCCCeEEEEecccCCHHHHHHHHHc----CCCCCCHHHHHHHHhccCCHHHHHH
Confidence 9999999999887 788888 899999861111 114566777554222 34445654322 233433 4
Q ss_pred HHHhHHHHHHHHHhhcCCcEE--EEecCCCCCCHHHHHHHHHHHHHcCC
Q 006673 434 AGCVNLARHIANTKAYGANVV--VAVNMFATDSKAELNAVRNAAMAAGA 480 (636)
Q Consensus 434 ~G~~NL~kHIeNi~~fGvPvV--VAINrF~tDT~aEI~~v~e~c~~~Gv 480 (636)
.|.+-....++.+...|+|=| -.+|+. +.+.+.|+.+|.
T Consensus 249 ~gi~~a~e~~~~L~~~gv~GiH~yt~n~~--------~~~~~I~~~l~~ 289 (310)
T 3apt_A 249 IGVEHAVRQVAELLEAGVEGVHFYTLNKS--------PATRMVLERLGL 289 (310)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEEEECCSSC--------CHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeCCCCH--------HHHHHHHHHcCC
Confidence 566666666777777777722 233433 245555666665
No 419
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=34.58 E-value=25 Score=35.35 Aligned_cols=28 Identities=29% Similarity=0.496 Sum_probs=23.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.+.+|.|+| |.|.||||++--|...|.
T Consensus 29 ~~~~ii~I~G----~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSG----PQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEEC----CTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEEC----CCCCCHHHHHHHHHHHhh
Confidence 4567888887 679999999999988884
No 420
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=34.41 E-value=44 Score=32.64 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=23.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..+..|+++| |.|.||||+..-+.+.+.
T Consensus 43 ~~~~~vli~G----~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYG----LTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4577899998 579999999999988884
No 421
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=34.40 E-value=53 Score=32.53 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHH
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGI 501 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~ 501 (636)
+..|++...+.|+|+||.-=- -++++++.|+++|++. ++. ++.+..|+.|..=-.+|++
T Consensus 58 ~~~~~~~a~~~g~~~VigTTG---~~~e~~~~l~~aa~~~~~~~-vv~a~N~siGv~ll~~l~~ 117 (245)
T 1p9l_A 58 VMGNLEFLIDNGIHAVVGTTG---FTAERFQQVESWLVAKPNTS-VLIAPNFAIGAVLSMHFAK 117 (245)
T ss_dssp HHHHHHHHHHTTCEEEECCCC---CCHHHHHHHHHHHHTSTTCE-EEECSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHHHHHhCCCCC-EEEECCccHHHHHHHHHHH
Confidence 455677778899999996332 4567889999999976 775 7788887766554444444
No 422
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=34.36 E-value=18 Score=34.07 Aligned_cols=25 Identities=36% Similarity=0.486 Sum_probs=19.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
+.|+++.+.+ |.|.||||+.--|..
T Consensus 21 ~~G~~~~lvG----psGsGKSTLl~~L~g 45 (218)
T 1z6g_A 21 NNIYPLVICG----PSGVGKGTLIKKLLN 45 (218)
T ss_dssp -CCCCEEEEC----STTSSHHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHh
Confidence 4588888887 789999998766543
No 423
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=34.31 E-value=27 Score=34.64 Aligned_cols=28 Identities=39% Similarity=0.714 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..|+-||++| |.|.||||++..+++.++
T Consensus 68 ~~~~~vLl~G----ppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAG----QPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHhc
Confidence 3467899998 579999999999998883
No 424
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=34.29 E-value=26 Score=33.32 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.0
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
++|+|| +.|.|||+.++-+...+
T Consensus 7 i~l~tG----~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 7 ICLITG----TPGSGKTLKMVSMMAND 29 (199)
T ss_dssp EEEEEC----CTTSSHHHHHHHHHHHC
T ss_pred EEEEEe----CCCCCHHHHHHHHHHHH
Confidence 678887 57999999998877666
No 425
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=34.21 E-value=39 Score=34.28 Aligned_cols=28 Identities=32% Similarity=0.330 Sum_probs=23.1
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.+.|.+|.+.| |-|.||||++--|+.-+
T Consensus 87 ~~~g~ivgI~G----~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAG----SVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEEC----CTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEC----CCCchHHHHHHHHHhhc
Confidence 35688998887 67999999998887666
No 426
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1
Probab=34.16 E-value=1.4e+02 Score=28.71 Aligned_cols=62 Identities=13% Similarity=0.118 Sum_probs=38.9
Q ss_pred HHHHHhh-cCCcEEEEe---cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHh
Q 006673 442 HIANTKA-YGANVVVAV---NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRAC 507 (636)
Q Consensus 442 HIeNi~~-fGvPvVVAI---NrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~ 507 (636)
-|+.+++ .+ |++|-+ .-+- |++|+..+.+.|.++|+..+..++.|..||. ..+..+.+.+.+
T Consensus 107 ~i~~v~~a~~-pv~vKvi~e~~~l--~~~~~~~~a~~a~eaGad~I~tstg~~~gga-~~~~i~~v~~~v 172 (225)
T 1mzh_A 107 ELKEIFRETP-SAVHKVIVETPYL--NEEEIKKAVEICIEAGADFIKTSTGFAPRGT-TLEEVRLIKSSA 172 (225)
T ss_dssp HHHHHHHTCT-TSEEEEECCGGGC--CHHHHHHHHHHHHHHTCSEEECCCSCSSSCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CceEEEEEeCCCC--CHHHHHHHHHHHHHhCCCEEEECCCCCCCCC-CHHHHHHHHHHh
Confidence 3555554 34 777765 3332 5678999999999999974433555655553 445556666655
No 427
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=34.15 E-value=74 Score=27.98 Aligned_cols=58 Identities=12% Similarity=0.011 Sum_probs=34.9
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHH-----HHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAA-----MAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c-----~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.++|+||++|+-.-..+.+.+.+.+.. .+.++. +. +.=++=|+|-.+|-+.+.+.+.+
T Consensus 122 ~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 122 RKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWT-IV--KSSSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp TTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EE--ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceE-EE--EccCCCccCHHHHHHHHHHHHHh
Confidence 489999999998765442223333321 122332 33 23356678888888888877754
No 428
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=34.05 E-value=81 Score=28.41 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=39.7
Q ss_pred HHHHHh-hcCCcEEEEecCCCCCCHH--HHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 442 HIANTK-AYGANVVVAVNMFATDSKA--ELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 442 HIeNi~-~fGvPvVVAINrF~tDT~a--EI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.+...+ ..++|+|++.|+..-..+. .++..+.++...++. +..+ =|+=|+|-.+|-+.+++.+.
T Consensus 105 ~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~-~~e~--SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 105 QLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXK-FIET--SAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCE-EEEC--BTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCc-eEEe--ccccCCCHHHHHHHHHHHHH
Confidence 344433 3589999999997642221 223344566667764 4333 35668898888888877663
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=33.93 E-value=22 Score=34.44 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~a 96 (636)
.|+=||+|+ |.|.||||++..|.+.
T Consensus 15 ~G~gvli~G----~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITG----EANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEE----SSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEc----CCCCCHHHHHHHHHHc
Confidence 588899988 6899999999999763
No 430
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=33.62 E-value=36 Score=34.12 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHcCCCCcccccccCeeeeecc--chhhhcc-CCCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 27 EPLHISEIAQELNLKPNHYDLYGKYKAKVLL--SVLDELE-GSADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 27 ~~~~I~~ia~~lgl~~~~l~~YG~~kAKi~~--~~~~~~~-~~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
...++.++..++ -++++..+.....++. .-|+++- .-+.|.+++|+| +.|.||||.+.-++...
T Consensus 26 ~~~~~~~~~~~~---~~~~~~~~~~~~~i~TG~~~LD~~lgGl~~G~l~li~G----~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 26 DDGSIDEALVTV---YEEIESADGNITGVPSGFTELDRMTYGYKRRNFVLIAA----RPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CCCCCHHHHHHH---HHHHHTCSSSCCSBCCSCHHHHHHHSSBCTTCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CcccHHHHHHHH---HHHHHhccCCCCCccCChHHHHhhcCCCCCCcEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 456777776543 1333332111223333 3455432 236799999999 46999999988877655
No 431
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=33.50 E-value=1e+02 Score=29.20 Aligned_cols=86 Identities=10% Similarity=-0.018 Sum_probs=51.5
Q ss_pred HHHHHHhHHHHHHHHHhhcCCcEEEEecCCCC--CCHHHH-------HHHHHHHHHcCCCeEEEcC--cccc-Cc-cchh
Q 006673 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFAT--DSKAEL-------NAVRNAAMAAGAFDAVVCS--HHAH-GG-KGAV 497 (636)
Q Consensus 431 aL~~G~~NL~kHIeNi~~fGvPvVVAINrF~t--DT~aEI-------~~v~e~c~~~Gv~~~avs~--~wa~-GG-eGa~ 497 (636)
..++....+++.|+..+.+|.+.||..--.+. ++++.+ +.+.+.|++.|+. +++-+ .+.. |. -...
T Consensus 87 ~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~lE~~n~~~~~~~~~~~~ 165 (269)
T 3ngf_A 87 REQEFRDNVDIALHYALALDCRTLHAMSGITEGLDRKACEETFIENFRYAADKLAPHGIT-VLVEPLNTRNMPGYFIVHQ 165 (269)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEECCBCBCTTSCHHHHHHHHHHHHHHHHHHHGGGTCE-EEECCCCTTTSTTBSCCCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEccCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeeCCcccCccchhcCH
Confidence 34667778999999999999999986321332 333333 3344556678996 66654 1111 11 1234
Q ss_pred HHHHHHHHHhhcCCCCCcccCC
Q 006673 498 DLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 498 eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
+-+..+++.+.. .++.++||
T Consensus 166 ~~~~~l~~~v~~--~~vg~~~D 185 (269)
T 3ngf_A 166 LEAVGLVKRVNR--PNVAVQLD 185 (269)
T ss_dssp HHHHHHHHHHCC--TTEEEEEE
T ss_pred HHHHHHHHHhCC--CCCCeEEE
Confidence 445566666642 35777776
No 432
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=33.48 E-value=1.1e+02 Score=30.29 Aligned_cols=108 Identities=13% Similarity=0.080 Sum_probs=70.6
Q ss_pred HHHHHHHHhhcCC-----cEEE----EecCCCCC----------CHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHH
Q 006673 439 LARHIANTKAYGA-----NVVV----AVNMFATD----------SKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDL 499 (636)
Q Consensus 439 L~kHIeNi~~fGv-----PvVV----AINrF~tD----------T~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eL 499 (636)
..+|++-+++||+ .+|- .+|-=.+. +.+++......++-.|.. ++-.+. .|-.|..++
T Consensus 94 ~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~-~VYld~--sG~~~~~~~ 170 (228)
T 3vzx_A 94 VGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLP-IFYLEY--SGVLGDIEA 170 (228)
T ss_dssp THHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCS-EEEEEC--TTSCCCHHH
T ss_pred hhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCC-EEEecC--CCCcCCHHH
Confidence 3567888899996 6666 57763322 236676666666667776 655544 466666777
Q ss_pred HHHHHHHhhcCCCCCcccCCCCCCHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHh
Q 006673 500 GIAVQRACENVTQPLKFLYPLDVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTG 555 (636)
Q Consensus 500 A~aVv~a~e~~~s~fk~LY~~~~~L~eKIetIA~IYGA~~V~~S~~A~kqLk~ie~ 555 (636)
-+++.+.+. +....|.-.-+=.|.++.++ -|||+|..-..+-+..+.+++
T Consensus 171 i~~i~~~~~----~~Pv~vGGGI~t~e~a~~~~--~gAD~VVVGSa~v~~p~~~~~ 220 (228)
T 3vzx_A 171 VKKTKAVLE----TSTLFYGGGIKDAETAKQYA--EHADVIVVGNAVYEDFDRALK 220 (228)
T ss_dssp HHHHHHHCS----SSEEEEESSCCSHHHHHHHH--TTCSEEEECTHHHHCHHHHHH
T ss_pred HHHHHHhcC----CCCEEEeCCCCCHHHHHHHH--hCCCEEEEChHHhcCHHHHHH
Confidence 777766542 23455665555566666665 599999998888776666554
No 433
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=33.33 E-value=1.2e+02 Score=31.09 Aligned_cols=107 Identities=13% Similarity=0.101 Sum_probs=62.3
Q ss_pred ccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEe-cCC------CCCCHHH-------HHHHHHHHHHcC--CCeEEEcC
Q 006673 424 YLNENVALVEAGCVNLARHIANTKAYGANVVVAV-NMF------ATDSKAE-------LNAVRNAAMAAG--AFDAVVCS 487 (636)
Q Consensus 424 l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAI-NrF------~tDT~aE-------I~~v~e~c~~~G--v~~~avs~ 487 (636)
+..++-+.-++.+..+++.|+..+.+|.+.||.- ... ..|.++. ++.+.+.+++.| +. +++-+
T Consensus 103 l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~-l~lE~ 181 (386)
T 1muw_A 103 FTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGAESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIR-FAIEP 181 (386)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEESSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCE-EEECC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeE-EEEee
Confidence 4456667778899999999999999999998863 221 2344443 344555566788 86 77766
Q ss_pred cccc--Ccc--chhHHHHHHHHHhhcCCCCCcccCCC------CCCHHHHHHHHH
Q 006673 488 HHAH--GGK--GAVDLGIAVQRACENVTQPLKFLYPL------DVSIKEKIDTIA 532 (636)
Q Consensus 488 ~wa~--GGe--Ga~eLA~aVv~a~e~~~s~fk~LY~~------~~~L~eKIetIA 532 (636)
+..+ +.. ...+-+.++++.+.. ++.+.+++|. ..++.+-|++..
T Consensus 182 ~~~e~~~~~~~~t~~~~~~li~~v~~-pn~vgl~lD~~H~~~~g~d~~~~l~~~~ 235 (386)
T 1muw_A 182 KPNEPRGDILLPTVGHALAFIERLER-PELYGVNPEVGHEQMAGLNFPHGIAQAL 235 (386)
T ss_dssp CSSSSSSEESSCSHHHHHHHHTTSSS-GGGEEECCBHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCcccccCCCHHHHHHHHHHhCC-ccceEEEeeccchhhcCCCHHHHHHHhc
Confidence 6321 111 123334444444432 1227777654 235555455443
No 434
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=33.31 E-value=35 Score=33.80 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCcccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGI 120 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGi 120 (636)
.+|.+.++|+ |-|.||||..++++.-+ ..-|+++ .+=+|++.--+|-
T Consensus 26 ~~G~I~vitG----~M~sGKTT~Llr~~~r~-~~~g~kv--li~kp~~D~R~~~ 72 (219)
T 3e2i_A 26 HSGWIECITG----SMFSGKSEELIRRLRRG-IYAKQKV--VVFKPAIDDRYHK 72 (219)
T ss_dssp -CCEEEEEEE----CTTSCHHHHHHHHHHHH-HHTTCCE--EEEEEC-------
T ss_pred CCceEEEEEC----CCCCCHHHHHHHHHHHH-HHcCCce--EEEEeccCCcchh
Confidence 5699999998 46999999999998766 3457775 4557777765554
No 435
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=33.18 E-value=1.5e+02 Score=29.38 Aligned_cols=103 Identities=13% Similarity=0.091 Sum_probs=66.2
Q ss_pred HHhHHHHHHHHHhhcCCcEEEEecC-C-----CCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 435 GCVNLARHIANTKAYGANVVVAVNM-F-----ATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvPvVVAINr-F-----~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
-+++..+.|+.++++|++|.+.|.. | .--+.+++..+.+.+.+.|+..+.+++. -|. +.-+....+++.+.
T Consensus 118 ~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt--~G~-~~P~~~~~lv~~l~ 194 (295)
T 1ydn_A 118 SIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT--IGR-GTPDTVAAMLDAVL 194 (295)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET--TSC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC--CCC-cCHHHHHHHHHHHH
Confidence 3567778899999999999877764 4 1234677777777777999988888874 333 45566666666654
Q ss_pred cC-C-CC--CcccCCCCCCHHHHHHHHHH-HhCCCceeeC
Q 006673 509 NV-T-QP--LKFLYPLDVSIKEKIDTIAR-SYGASGVEYS 543 (636)
Q Consensus 509 ~~-~-s~--fk~LY~~~~~L~eKIetIA~-IYGA~~V~~S 543 (636)
+. + -+ ++.=.+..+.+.. .++- -.|++.|+.|
T Consensus 195 ~~~~~~~l~~H~Hn~~Gla~an---~l~Ai~aG~~~vd~s 231 (295)
T 1ydn_A 195 AIAPAHSLAGHYHDTGGRALDN---IRVSLEKGLRVFDAS 231 (295)
T ss_dssp TTSCGGGEEEEEBCTTSCHHHH---HHHHHHHTCCEEEEB
T ss_pred HhCCCCeEEEEECCCcchHHHH---HHHHHHhCCCEEEec
Confidence 32 2 11 3332344455543 4444 6788888765
No 436
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=33.10 E-value=24 Score=34.77 Aligned_cols=22 Identities=36% Similarity=0.450 Sum_probs=18.6
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLC 94 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~ 94 (636)
.++|.|||. .|.||||++--|+
T Consensus 75 ~~iI~I~G~----~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGI----SGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEEC----TTSCHHHHHHHHH
T ss_pred CEEEEEECC----CCCCHHHHHHHHH
Confidence 568999995 7999999987776
No 437
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=33.07 E-value=39 Score=34.78 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=27.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+.|.++++.+ |.|.||||++.-++..+ .+-|.+++
T Consensus 59 ~~G~iv~I~G----~pGsGKTtLal~la~~~-~~~g~~vl 93 (349)
T 2zr9_A 59 PRGRVIEIYG----PESSGKTTVALHAVANA-QAAGGIAA 93 (349)
T ss_dssp ETTSEEEEEE----STTSSHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCCeEEEEEC----CCCCCHHHHHHHHHHHH-HhCCCeEE
Confidence 5799999998 57999999999998777 34455543
No 438
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=33.07 E-value=83 Score=32.12 Aligned_cols=46 Identities=11% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcCCCeEEE
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVV 485 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aE----I~~v~e~c~~~Gv~~~av 485 (636)
|.|.+-.+...|+|+|+++|+-.--+++| ++.+.+.-++.|.. +..
T Consensus 106 i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~-v~~ 155 (307)
T 1t9h_A 106 LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD-VYL 155 (307)
T ss_dssp HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC-EEE
T ss_pred HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe-EEE
Confidence 55666667789999999999977544333 66666666677886 443
No 439
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=32.96 E-value=35 Score=32.92 Aligned_cols=32 Identities=22% Similarity=0.249 Sum_probs=25.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCC
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDK 103 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~ 103 (636)
+.++=||++| |.|.||||++..+++.++ ..+.
T Consensus 65 ~~~~~vll~G----~~GtGKT~la~~la~~l~-~~~~ 96 (309)
T 3syl_A 65 TPTLHMSFTG----NPGTGKTTVALKMAGLLH-RLGY 96 (309)
T ss_dssp CCCCEEEEEE----CTTSSHHHHHHHHHHHHH-HTTS
T ss_pred CCCceEEEEC----CCCCCHHHHHHHHHHHHH-hcCC
Confidence 3455688887 679999999999999994 4443
No 440
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=32.78 E-value=1.5e+02 Score=29.06 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=38.1
Q ss_pred HHHHhHHHHHHHHHhhcCCcEEEEecCCC-CCCHHHHH-------HHHHHHHHcCCCe-EEEcCcc
Q 006673 433 EAGCVNLARHIANTKAYGANVVVAVNMFA-TDSKAELN-------AVRNAAMAAGAFD-AVVCSHH 489 (636)
Q Consensus 433 ~~G~~NL~kHIeNi~~fGvPvVVAINrF~-tDT~aEI~-------~v~e~c~~~Gv~~-~avs~~w 489 (636)
++....+++.|+-.+.+|.|.||.- -.+ .+++++++ .+.+.|++.|+.- +++-+|+
T Consensus 104 ~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~ 168 (303)
T 3l23_A 104 PKIMEYWKATAADHAKLGCKYLIQP-MMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN 168 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEC-SCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence 4557789999999999999999873 222 24565554 4456677889940 4555553
No 441
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=32.70 E-value=31 Score=36.01 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=30.8
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
+.|.|-||+.| |||||+-=|.+.| ...|+++. ...-|.++
T Consensus 38 ~~~vI~VtGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~sp~l~ 77 (428)
T 1jbw_A 38 QGRYIHVTGTN------GKGSAANAIAHVL-EASGLTVG-LYTSPFIM 77 (428)
T ss_dssp SSCEEEEECSS------CHHHHHHHHHHHH-HHTTCCEE-EECSSCSS
T ss_pred cCcEEEEECCC------ChHHHHHHHHHHH-HHCCCCEE-EEeCCccC
Confidence 46799999986 9999999999999 57788754 34445443
No 442
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=32.65 E-value=48 Score=30.61 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=62.9
Q ss_pred CCCCeEEeeccccccccchhccccccccCCCCcceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHH
Q 006673 361 GPGGFVVTEAGFGADIGAEKFMNIKCRYSGLTPQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLA 440 (636)
Q Consensus 361 g~~dyvVTEAGFGaDlGaEKF~dIkcr~~gl~P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~ 440 (636)
..+||||-+.+-+.+......+ ..-|.+|+|++-. ... +..+.
T Consensus 110 ~~yD~viiD~~~~~~~~~~~~~--------~~ad~vi~v~~~~-------------------------~~~----~~~~~ 152 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQLDAMSAM--------LSGEEALLVTNPE-------------------------ISC----LTDTM 152 (237)
T ss_dssp GGCSEEEEECCSSSSHHHHHHH--------TTCSEEEEEECSC-------------------------HHH----HHHHH
T ss_pred hcCCEEEEECCCCcCHHHHHHH--------HHCCeEEEEecCC-------------------------ccc----HHHHH
Confidence 4569999888766543322222 2357788887422 111 12233
Q ss_pred HHHHHHhhcCCcE-EEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCCCCCcccCC
Q 006673 441 RHIANTKAYGANV-VVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVTQPLKFLYP 519 (636)
Q Consensus 441 kHIeNi~~fGvPv-VVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~s~fk~LY~ 519 (636)
+-++.+++.|++. -|.+|++...+.. +.+.+.++..|.+ +. ...-.+ ..+.++.... .+ -+.|.
T Consensus 153 ~~~~~l~~~~~~~~~vv~N~~~~~~~~--~~~~~~~~~~~~~-~~-~~Ip~~---------~~~~~a~~~g-~~-v~~~~ 217 (237)
T 1g3q_A 153 KVGIVLKKAGLAILGFVLNRYGRSDRD--IPPEAAEDVMEVP-LL-AVIPED---------PAIREGTLEG-IP-AVKYK 217 (237)
T ss_dssp HHHHHHHHTTCEEEEEEEEEETSCTTC--CCHHHHHHHHCSC-EE-EEEECC---------HHHHHHHHHT-SC-HHHHS
T ss_pred HHHHHHHhCCCceEEEEEecCCcccch--hHHHHHHHHhCcc-ce-eeCCCC---------hHHHHHHHcC-CC-eEEeC
Confidence 4445555557654 4788999875543 2233344456665 32 222111 2333333332 11 12344
Q ss_pred CCCCHHHHHHHHHH-Hh
Q 006673 520 LDVSIKEKIDTIAR-SY 535 (636)
Q Consensus 520 ~~~~L~eKIetIA~-IY 535 (636)
.+.+..+-++.+|+ +.
T Consensus 218 ~~~~~~~~~~~la~~l~ 234 (237)
T 1g3q_A 218 PESKGAKAFVKLAEEIE 234 (237)
T ss_dssp TTSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 45667777888887 64
No 443
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=32.35 E-value=82 Score=33.46 Aligned_cols=43 Identities=12% Similarity=0.290 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCCCC--HHHHHHHH----HHHHHcCC
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFATDS--KAELNAVR----NAAMAAGA 480 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~tDT--~aEI~~v~----e~c~~~Gv 480 (636)
....|+..++..|+| +||++|+-.-.. ++.++.++ ++.++.|.
T Consensus 158 qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 207 (483)
T 3p26_A 158 QTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGF 207 (483)
T ss_dssp HHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcCCCcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCC
Confidence 456788889999976 999999975432 44444444 34444454
No 444
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=32.24 E-value=2.9e+02 Score=26.65 Aligned_cols=119 Identities=6% Similarity=-0.015 Sum_probs=71.8
Q ss_pred HHHHhhcCCcEEEEe-------------cCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 443 IANTKAYGANVVVAV-------------NMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 443 IeNi~~fGvPvVVAI-------------NrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
.+.++++++|+|..- -++..|...+...+.+++.+.|.+.+++-. .+ ..-+.+.++.+.+.+++
T Consensus 89 ~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~--~~-~~~g~~~~~~~~~~l~~ 165 (368)
T 4eyg_A 89 APLATQAKVPEIVMAAGTSIITERSPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLT--SD-YAPGNDALAFFKERFTA 165 (368)
T ss_dssp HHHHHHHTCCEEESSCCCGGGGGGCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEE--ES-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCceEEeccCCChhhccCCCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEe--cC-chHhHHHHHHHHHHHHH
Confidence 345667899998752 123356677888888999889988776543 22 33445677777777764
Q ss_pred CCCC--CcccCCC-CCCHHHHHHHHHHHhCCCceee---CHHHHHHHHHHHhCCCCC--CCeeE
Q 006673 510 VTQP--LKFLYPL-DVSIKEKIDTIARSYGASGVEY---SEEAEKQIEMYTGQGFSG--LPICM 565 (636)
Q Consensus 510 ~~s~--fk~LY~~-~~~L~eKIetIA~IYGA~~V~~---S~~A~kqLk~ie~lG~~~--LPVCm 565 (636)
..-+ ....|+. +.....-+++|.. -+++-|.+ ...+..-++++.++|+.. +|+..
T Consensus 166 ~g~~v~~~~~~~~~~~d~~~~~~~l~~-~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~ 228 (368)
T 4eyg_A 166 GGGEIVEEIKVPLANPDFAPFLQRMKD-AKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIG 228 (368)
T ss_dssp TTCEEEEEEEECSSSCCCHHHHHHHHH-HCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEE
T ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHh-cCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEe
Confidence 2111 1122332 2344444444433 24555544 457788888999999874 67654
No 445
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=32.04 E-value=35 Score=37.61 Aligned_cols=69 Identities=22% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCC------HHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDS------KAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT------~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
-..|++.++..++|+||++|+-.-.. .+++......+++.+.. +-+-.+=++=|+|-.+|-+.+...++
T Consensus 93 t~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~-~~iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 93 TVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGD-VQAVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSS-EEECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCC-ceEEEEECCCCCCchhHHHHHHHhhh
Confidence 34577888889999999999965321 11221111112222221 34445556778999999999988875
No 446
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=31.21 E-value=36 Score=35.66 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=27.4
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.+.|-||+.| |||||+-=|++.| ...|+++.
T Consensus 104 ~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~ 134 (439)
T 2x5o_A 104 APIVAITGSN------GKSTVTTLVGEMA-KAAGVNVG 134 (439)
T ss_dssp SCEEEEECSS------SHHHHHHHHHHHH-HHTTCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HhcCCCEE
Confidence 6799999986 9999999999999 57898865
No 447
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=31.05 E-value=32 Score=33.70 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=23.4
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..++.|+++| |.|.||||++.-+.+.+.
T Consensus 42 ~~~~~vll~G----~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYG----LTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECB----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4567889988 579999999999998884
No 448
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=30.99 E-value=1.6e+02 Score=26.29 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=40.7
Q ss_pred HhhcCCcEEEEecCCCCCCHHH----HHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 446 TKAYGANVVVAVNMFATDSKAE----LNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 446 i~~fGvPvVVAINrF~tDT~aE----I~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
++.+++|++++.|+...-+..| ++.+++++.+.+.. +..-..=+.=|+|-.+|-+.+.+.+.+
T Consensus 133 ~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 133 AVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGD-VQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp HHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSC-EEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred HHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCC-CceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 3468999999999977666543 45666666655432 111112245578888888888877654
No 449
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=30.74 E-value=31 Score=36.41 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=31.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCC
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQG 115 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlG 115 (636)
+-|.|-||+.| |||||+-=|++.| ...|+++. ...-|.++
T Consensus 51 ~~~vI~VTGTn------GKtTT~~~l~~iL-~~~G~~vg-~~~Sphl~ 90 (442)
T 1o5z_A 51 EYKTIHIGGTN------GKGSVANMVSNIL-VSQGYRVG-SYYSPHLS 90 (442)
T ss_dssp SSEEEEEECSS------SHHHHHHHHHHHH-HHHTCCEE-EECCSCSS
T ss_pred cCCEEEEECCc------CHHHHHHHHHHHH-HHCCCCEE-EECCCCcC
Confidence 45799999986 9999999999999 57898854 44555554
No 450
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=30.70 E-value=32 Score=34.34 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=32.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEEeeCCCCCCccccccCCCCCCceeeecCccccc
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTCLRQPSQGPTFGIKGGAAGGGYSQVIPMDEFNL 140 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~lRePSlGP~FGiKGGAaGGGysqv~Pme~iNL 140 (636)
..|.+|-++| |-|.||||++--|..-+. . .|+ +|...+++|+++.+
T Consensus 78 ~~g~iigI~G----~~GsGKSTl~~~L~~~l~-~----------~~~-------------~G~i~vi~~d~~~~ 123 (308)
T 1sq5_A 78 RIPYIISIAG----SVAVGKSTTARVLQALLS-R----------WPE-------------HRRVELITTDGFLH 123 (308)
T ss_dssp CCCEEEEEEE----CTTSSHHHHHHHHHHHHT-T----------STT-------------CCCEEEEEGGGGBC
T ss_pred CCCEEEEEEC----CCCCCHHHHHHHHHHHHh-h----------CCC-------------CCeEEEEecCCccC
Confidence 5688998988 569999999887765552 1 132 45567888888764
No 451
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=30.52 E-value=4.8e+02 Score=27.14 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=31.1
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~w 489 (636)
..+||.|=|-- .-|++|+..+.+.|++.|+..+++++.+
T Consensus 219 ~~~Pv~vKi~p--~~~~~~~~~ia~~~~~aGadgi~v~ntt 257 (367)
T 3zwt_A 219 HRPAVLVKIAP--DLTSQDKEDIASVVKELGIDGLIVTNTT 257 (367)
T ss_dssp GCCEEEEEECS--CCCHHHHHHHHHHHHHHTCCEEEECCCB
T ss_pred CCceEEEEeCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 68999998863 3457889999999999999866666654
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=30.40 E-value=64 Score=28.35 Aligned_cols=55 Identities=9% Similarity=-0.063 Sum_probs=30.9
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHH
Q 006673 448 AYGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQR 505 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~~avs~~wa~GGeGa~eLA~aVv~ 505 (636)
..++|+||++|+..-..+.+.+.+.+... +.++. +. +.=++=|+|-.+|-+.+++
T Consensus 120 ~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 120 LRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWH-IQ--ACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE-EE--ECBTTTTBTHHHHHHHHHT
T ss_pred hCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceE-EE--EccCCCCcCHHHHHHHHHh
Confidence 37899999999986543222233333332 12222 22 3335667887777666543
No 453
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=30.34 E-value=75 Score=31.68 Aligned_cols=51 Identities=12% Similarity=0.032 Sum_probs=34.6
Q ss_pred HhHHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcC
Q 006673 436 CVNLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCS 487 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~ 487 (636)
+....+-|+.+++.|+++.+-.--.+..+++|+..+.+++++.|+. +...+
T Consensus 145 ~~~v~~~i~~l~~~g~~v~i~~vv~~g~n~~ei~~~~~~~~~~g~~-~~~i~ 195 (340)
T 1tv8_A 145 ATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIE-IRFIE 195 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEECTTTTGGGHHHHHHHHHHTTCC-EEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEeCCCCHHHHHHHHHHHHhcCCe-EEEEE
Confidence 3344555666677888765544345555778999999999999995 54433
No 454
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=30.22 E-value=26 Score=32.97 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=20.4
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
.-.+|.+||. .|.||||++--|++.|
T Consensus 11 ~~~iIgltG~----~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGK----IGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECS----TTSSHHHHHHHHHHHH
T ss_pred cceEEEEECC----CCCCHHHHHHHHHHhc
Confidence 3457888885 6999999998877654
No 455
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=30.12 E-value=81 Score=28.28 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=38.1
Q ss_pred HHHHHHHHHhh----cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 438 NLARHIANTKA----YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 438 NL~kHIeNi~~----fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
++.+.+..+.+ .++|+||++|+-.-..+.+.+.+.+... +.++. +. +.=++-|+|-.+|-+.+++.+.
T Consensus 114 ~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~-~~--~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 114 ESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWY-VQ--ATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEE-EE--ECBTTTTBTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceE-EE--ECcCCCcCCHHHHHHHHHHHHh
Confidence 34444444433 4899999999976544322222222211 11222 22 3335668888888888877653
No 456
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.94 E-value=24 Score=32.21 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=21.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQA 96 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~a 96 (636)
+.|.++.+.+ |.|.||||+..-|+-.
T Consensus 23 ~~G~~~~l~G----~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 23 ETQAITEVFG----EFGSGKTQLAHTLAVM 48 (231)
T ss_dssp ESSEEEEEEE----STTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEC----CCCCCHHHHHHHHHHH
Confidence 4688999988 6799999998777543
No 457
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=29.88 E-value=1.7e+02 Score=28.18 Aligned_cols=34 Identities=41% Similarity=0.358 Sum_probs=27.5
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEEE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVTC 108 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~~ 108 (636)
|.|.| + ..-|+||||+|+.|+.+| ++.|+++.+.
T Consensus 3 kvIav---s-~KGGvGKTT~a~nLA~~L-a~~G~rVlli 36 (289)
T 2afh_E 3 RQCAI---Y-GKGGIGKSTTTQNLVAAL-AEMGKKVMIV 36 (289)
T ss_dssp EEEEE---E-ECTTSSHHHHHHHHHHHH-HHTTCCEEEE
T ss_pred eEEEE---e-CCCcCcHHHHHHHHHHHH-HHCCCeEEEE
Confidence 45666 2 388999999999999999 5789997654
No 458
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=29.84 E-value=30 Score=37.45 Aligned_cols=31 Identities=29% Similarity=0.294 Sum_probs=26.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
.+.|-||+.| ||||||-=|++.| ...|+++.
T Consensus 122 ~~vIaVTGTn------GKTTTt~li~~iL-~~~G~~~~ 152 (524)
T 3hn7_A 122 RHVIAVAGTH------GKTTTTTMLAWIL-HYAGIDAG 152 (524)
T ss_dssp SEEEEEECSS------CHHHHHHHHHHHH-HHTTCCCE
T ss_pred CcEEEEECCC------CHHHHHHHHHHHH-HHcCCCce
Confidence 5799999997 9999999999999 57888764
No 459
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=29.77 E-value=35 Score=33.80 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
..++.|+++| |.|.||||++.-+++.+.
T Consensus 43 ~~~~~vll~G----~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 43 EVKFSNLFLG----LTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCCCEEEEEE----CTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 4467899998 579999999999988883
No 460
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=29.74 E-value=20 Score=32.96 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=18.8
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+..|.+|+ |.|.||||++--|+.-+
T Consensus 5 ~~~i~i~G----~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDG----PSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34677777 57999999887776655
No 461
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=29.72 E-value=31 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=17.7
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
.++|.+|+. .|.||||++--|++
T Consensus 8 ~~~I~i~G~----~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGN----IGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEEC----TTSCHHHHHHHHHH
T ss_pred ceEEEEECC----CCCCHHHHHHHHHH
Confidence 468888885 69999998765543
No 462
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=29.32 E-value=54 Score=34.78 Aligned_cols=43 Identities=19% Similarity=0.239 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhcCCc-EEEEecCCCCC--CHHHHH----HHHHHHHHcCC
Q 006673 438 NLARHIANTKAYGAN-VVVAVNMFATD--SKAELN----AVRNAAMAAGA 480 (636)
Q Consensus 438 NL~kHIeNi~~fGvP-vVVAINrF~tD--T~aEI~----~v~e~c~~~Gv 480 (636)
...+|+..++..|+| +||++|+-.-- ++++++ .+++++++.|.
T Consensus 132 qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~ 181 (458)
T 1f60_A 132 QTREHALLAFTLGVRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGY 181 (458)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHcCCCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCC
Confidence 466788888889997 99999997643 455443 34555566663
No 463
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=28.77 E-value=50 Score=34.79 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=24.1
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
+.|.+|+|+| |-|.||||.+.-++..+.
T Consensus 201 ~~G~liiI~G----~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAA----RPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEEC----CTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEC----CCCCCHHHHHHHHHHHHH
Confidence 6799999998 569999999998888773
No 464
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=28.75 E-value=1.6e+02 Score=29.22 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=55.2
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCC-------CCHHHHHHHHHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcCC
Q 006673 439 LARHIANTKAYGANVVVAVNMFAT-------DSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENVT 511 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~t-------DT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~~ 511 (636)
+.+=.+-.++||+|+| +|-|+. -|++++....+.|.++|+. ++-.. |. |..+.-+.+++.+..
T Consensus 127 ~~~v~~~~~~~~~~vI--i~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD-~vkt~-~~----~~~e~~~~~~~~~~~-- 196 (263)
T 1w8s_A 127 LARIKRDAVKFDLPLV--VESFPRGGKVVNETAPEIVAYAARIALELGAD-AMKIK-YT----GDPKTFSWAVKVAGK-- 196 (263)
T ss_dssp HHHHHHHHHHHTCCEE--EEECCCSTTCCCTTCHHHHHHHHHHHHHHTCS-EEEEE-CC----SSHHHHHHHHHHTTT--
T ss_pred HHHHHHHHHHcCCeEE--EEeeCCCCccccCCCHHHHHHHHHHHHHcCCC-EEEEc-CC----CCHHHHHHHHHhCCC--
Confidence 3333444557999975 576662 1678888888889999996 44333 53 345555666665521
Q ss_pred CCCcccCCCCC-CHHHHHHHHHH--HhCCCceeeCH
Q 006673 512 QPLKFLYPLDV-SIKEKIDTIAR--SYGASGVEYSE 544 (636)
Q Consensus 512 s~fk~LY~~~~-~L~eKIetIA~--IYGA~~V~~S~ 544 (636)
.+.+..=-... +.++=++.|.. -.||+++....
T Consensus 197 ~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvgr 232 (263)
T 1w8s_A 197 VPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGR 232 (263)
T ss_dssp SCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEeh
Confidence 12222222222 55555555544 36777776543
No 465
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=28.74 E-value=34 Score=30.20 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=20.7
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
-||++| |.|.||||++.-+++.+.
T Consensus 40 ~~ll~G----~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSG----PPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEEC----STTSSHHHHHHHHHHHHH
T ss_pred eEEEEC----CCCCCHHHHHHHHHHHHh
Confidence 388888 679999999999998884
No 466
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=28.72 E-value=21 Score=32.81 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=17.8
Q ss_pred EEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 72 VVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 72 ilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|++|| |-|.||||++--|++.+
T Consensus 3 I~l~G----~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMG----LPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEC----STTSSHHHHHHHHHHHH
T ss_pred EEEEC----CCCCCHHHHHHHHHHHh
Confidence 66676 46999999998888776
No 467
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=28.67 E-value=64 Score=28.89 Aligned_cols=57 Identities=11% Similarity=-0.061 Sum_probs=29.4
Q ss_pred hcCCcEEEEecCCCCCCHHHHHHHHHHHHHcC---------CCeEEEcCccccCccchhHHHHHHH
Q 006673 448 AYGANVVVAVNMFATDSKAELNAVRNAAMAAG---------AFDAVVCSHHAHGGKGAVDLGIAVQ 504 (636)
Q Consensus 448 ~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~G---------v~~~avs~~wa~GGeGa~eLA~aVv 504 (636)
..++|+|++.|+-.-..+...+.+++++.... ...+-+-+.=++=|+|-.+|-+.++
T Consensus 122 ~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 187 (190)
T 1m2o_B 122 LKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLS 187 (190)
T ss_dssp GTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHH
T ss_pred hcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHH
Confidence 36899999999975433212233444443211 0111222233455677666665554
No 468
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=28.48 E-value=1.5e+02 Score=29.50 Aligned_cols=61 Identities=10% Similarity=0.023 Sum_probs=37.7
Q ss_pred HHHhhc--CCcEEEEecCCCCCCHHHHHHHHHHHHHc-CCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 444 ANTKAY--GANVVVAVNMFATDSKAELNAVRNAAMAA-GAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 444 eNi~~f--GvPvVVAINrF~tDT~aEI~~v~e~c~~~-Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
+.++++ ++|+++++|+-.-.++++ + +.+.+++. +...+. ..-++=|+|-.+|-+.+.+.+.
T Consensus 109 ~~l~~~~~~~p~ilV~NK~Dl~~~~~-~-~~~~~~~~~~~~~~~--~iSA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 109 RALKPLVGKVPILLVGNKLDAAKYPE-E-AMKAYHELLPEAEPR--MLSALDERQVAELKADLLALMP 172 (301)
T ss_dssp HHHGGGTTTSCEEEEEECGGGCSSHH-H-HHHHHHHTSTTSEEE--ECCTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHhhcCCCCEEEEEECcccCCchH-H-HHHHHHHhcCcCcEE--EEeCCCCCCHHHHHHHHHHhcc
Confidence 456666 899999999987655444 0 23333333 322222 2336668888888888776654
No 469
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=28.18 E-value=34 Score=36.84 Aligned_cols=68 Identities=21% Similarity=0.190 Sum_probs=38.8
Q ss_pred CCCCcccccccCeeeeecc-chhhhccCCCCCcEEEEeecCCCCCCCCcchhHHHHHH----HHhhhcCCcEEEEeeCC
Q 006673 39 NLKPNHYDLYGKYKAKVLL-SVLDELEGSADGYYVVVGGITPTPLGEGKSTTTVGLCQ----ALGAFLDKKVVTCLRQP 112 (636)
Q Consensus 39 gl~~~~l~~YG~~kAKi~~-~~~~~~~~~~~gklilVTaitPTP~GEGKtTttIGL~~----aL~~~lg~~~~~~lReP 112 (636)
++++. -..||+..-+-.+ +.|.. ...++.++|.|+|| .|-||||++.-+.. ....+......+++++.
T Consensus 123 ~~p~~-~~~~GR~~~~~~l~~~L~~-~~~~~~~vv~I~G~----gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~ 195 (549)
T 2a5y_B 123 NVPKQ-MTCYIREYHVDRVIKKLDE-MCDLDSFFLFLHGR----AGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT 195 (549)
T ss_dssp TCBCC-CCSCCCHHHHHHHHHHHHH-HTTSSSEEEEEECS----TTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC
T ss_pred CCCCC-CccCCchHHHHHHHHHHhc-ccCCCceEEEEEcC----CCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCC
Confidence 44433 3337985433222 12221 11234689999998 79999999887663 33334455556666653
No 470
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=28.11 E-value=35 Score=35.84 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.2
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
-+.|++|++.+ |-|.||||++--|+..+
T Consensus 166 i~~~~~i~l~G----~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKG----PIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEEC----STTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEC----CCCCCHHHHHHHHHhhc
Confidence 36799999988 68999999988887544
No 471
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=28.10 E-value=46 Score=36.75 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=26.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
+.|.+|.+.+-| |.||||+.--|+--+ ..-|.+..+
T Consensus 291 ~~GeVI~LVGpN----GSGKTTLl~~LAgll-~~~~G~V~l 326 (503)
T 2yhs_A 291 KAPFVILMVGVN----GVGKTTTIGKLARQF-EQQGKSVML 326 (503)
T ss_dssp CTTEEEEEECCT----TSSHHHHHHHHHHHH-HHTTCCEEE
T ss_pred cCCeEEEEECCC----cccHHHHHHHHHHHh-hhcCCeEEE
Confidence 468899998864 999999998887766 344555443
No 472
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=28.02 E-value=1.3e+02 Score=29.74 Aligned_cols=50 Identities=2% Similarity=-0.061 Sum_probs=36.8
Q ss_pred HHHHHHHHHhh-cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCcc
Q 006673 438 NLARHIANTKA-YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHH 489 (636)
Q Consensus 438 NL~kHIeNi~~-fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~w 489 (636)
++.+-++.+++ .++|++|=++-.. +.+|+..+.+.++++|+..+.+++..
T Consensus 145 ~~~~iv~~vr~~~~~Pv~vKi~~~~--~~~~~~~~a~~~~~~G~d~i~v~~~~ 195 (311)
T 1jub_A 145 ATEKLLKEVFTFFTKPLGVKLPPYF--DLVHFDIMAEILNQFPLTYVNSVNSI 195 (311)
T ss_dssp HHHHHHHHHTTTCCSCEEEEECCCC--SHHHHHHHHHHHTTSCCCEEEECCCE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCC--CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 45666777776 5899999776443 57788888888899999755555543
No 473
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=27.96 E-value=36 Score=36.38 Aligned_cols=32 Identities=34% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+-++|-||+.| |||||+-=|.+.| ...|+++.
T Consensus 107 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~g~~~~ 138 (498)
T 1e8c_A 107 NLRLVGVTGTN------GKTTTTQLLAQWS-QLLGEISA 138 (498)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cCeEEEEeCCc------ChHHHHHHHHHHH-HhCCCCEE
Confidence 46799999986 9999999999999 57888754
No 474
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=27.68 E-value=57 Score=34.24 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=23.9
Q ss_pred CCCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 66 SADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 66 ~~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
-+.|.+++|+| |.|.||||.+.-++...
T Consensus 197 l~~G~l~ii~G----~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAA----RPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEE----CTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEe----CCCCCHHHHHHHHHHHH
Confidence 35799999998 56999999998888776
No 475
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=27.61 E-value=68 Score=28.59 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=43.2
Q ss_pred ccCHHHHHHHHhHHHHHHHHHhh--cCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc
Q 006673 426 NENVALVEAGCVNLARHIANTKA--YGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC 486 (636)
Q Consensus 426 ~eNleaL~~G~~NL~kHIeNi~~--fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs 486 (636)
+.|++.+.+ .|.+.|+..-. -|-|||+=+-.+. ++.+++.+.+.|++.|..-+.++
T Consensus 24 ~~d~~~l~~---~L~~ki~~aP~FF~~aPVVlDl~~l~--~~~dl~~L~~~l~~~gl~~vGV~ 81 (120)
T 3ghf_A 24 EAEPEVIRQ---ALEDKIAQAPAFLKHAPVVINVSGLE--SPVNWPELHKIVTSTGLRIIGVS 81 (120)
T ss_dssp SCCHHHHHH---HHHHHHHHSHHHHTTCEEEEEEEECC--SSCCHHHHHHHHHTTTCEEEEEE
T ss_pred CCCHHHHHH---HHHHHHHhChHhhCCCcEEEEccccC--ChHHHHHHHHHHHHcCCEEEEEe
Confidence 467777776 56778888887 3789999888776 34679999999999999744444
No 476
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=27.57 E-value=1e+02 Score=27.85 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=20.3
Q ss_pred HHHHHHhHHHHHHHHHhhcCCcEEEEecCCCCCC
Q 006673 431 LVEAGCVNLARHIANTKAYGANVVVAVNMFATDS 464 (636)
Q Consensus 431 aL~~G~~NL~kHIeNi~~fGvPvVVAINrF~tDT 464 (636)
.+..-+..+..+.+....-++|+++++|+-.-.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 134 (218)
T 1nrj_B 101 TTAEFLVDILSITESSCENGIDILIACNKSELFT 134 (218)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHhcccccccCCCCEEEEEEchHhcc
Confidence 3333344444443332346899999999975543
No 477
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=27.56 E-value=80 Score=27.98 Aligned_cols=57 Identities=9% Similarity=-0.114 Sum_probs=33.5
Q ss_pred cCCcEEEEecCCCCCCHHHHHHHHHHHH-----HcCCCeEEEcCccccCccchhHHHHHHHHHhh
Q 006673 449 YGANVVVAVNMFATDSKAELNAVRNAAM-----AAGAFDAVVCSHHAHGGKGAVDLGIAVQRACE 508 (636)
Q Consensus 449 fGvPvVVAINrF~tDT~aEI~~v~e~c~-----~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e 508 (636)
.++|+||++|+..-..+.+.+.+.+... +.++. +-++=++-|+|-.+|-+.+++.+.
T Consensus 123 ~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~SA~~g~gv~~l~~~l~~~~~ 184 (188)
T 1zd9_A 123 QGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREIC---CYSISCKEKDNIDITLQWLIQHSK 184 (188)
T ss_dssp TTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHTCC
T ss_pred CCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCee---EEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999976543212222222211 11222 223446778888888888877664
No 478
>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1
Probab=27.33 E-value=94 Score=32.02 Aligned_cols=95 Identities=13% Similarity=0.015 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHH-------HHHHHHcCCCeEEEcCccccCccchhHHHHHHHHHhhcC
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAV-------RNAAMAAGAFDAVVCSHHAHGGKGAVDLGIAVQRACENV 510 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v-------~e~c~~~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~~ 510 (636)
+|++-|+..++|||+|. +..|-.|+.+. .++|+++|...+.+|+.+-+=. -.++.+.|-++.
T Consensus 81 ~l~ekI~l~~~~gV~v~------~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~--~~~~~~lI~~a~--- 149 (276)
T 1u83_A 81 DLEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMT--NKEKAAYIADFS--- 149 (276)
T ss_dssp THHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCC--HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHcCCeEe------CCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCC--HHHHHHHHHHHH---
Confidence 38888999999999984 57777776554 5789999998777887665422 233444443332
Q ss_pred CCCCcccCC---------CCCCHHHHHHHHHH--HhCCCceeeCH
Q 006673 511 TQPLKFLYP---------LDVSIKEKIDTIAR--SYGASGVEYSE 544 (636)
Q Consensus 511 ~s~fk~LY~---------~~~~L~eKIetIA~--IYGA~~V~~S~ 544 (636)
+. |+.+++ ...++.+.|+.+.+ =-||+.|....
T Consensus 150 ~~-f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEa 193 (276)
T 1u83_A 150 DE-FLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEA 193 (276)
T ss_dssp TT-SEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC-
T ss_pred hh-cEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEee
Confidence 23 777773 23577888999988 78888887654
No 479
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=27.30 E-value=17 Score=33.24 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=15.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHH
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~ 95 (636)
.|.+|| |.|.||||++--|+.
T Consensus 4 ~i~l~G----~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTG----GIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEC----STTSCHHHHHHHHHT
T ss_pred EEEEEC----CCCCCHHHHHHHHHH
Confidence 466666 579999998766643
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=27.24 E-value=23 Score=34.83 Aligned_cols=25 Identities=48% Similarity=0.771 Sum_probs=19.9
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
..+|.+++ |.|.||||++--|++.|
T Consensus 9 ~~~i~i~G----~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDG----PAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEEC----CTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEC----CCCCCHHHHHHHHHHHh
Confidence 34677776 68999999998888777
No 481
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=27.11 E-value=22 Score=33.68 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=22.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHh
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALG 98 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~ 98 (636)
++..|.+.|. -|.||||+.--|++.|+
T Consensus 26 ~~~~i~l~G~----~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGP----PGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECC----TTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3678889885 59999999988888774
No 482
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus}
Probab=26.97 E-value=1.6e+02 Score=30.34 Aligned_cols=120 Identities=14% Similarity=0.196 Sum_probs=71.9
Q ss_pred HHHHHHHhhcCCcEE-EEec---CCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCccch--hHHHHHHHH-Hhhc-CC
Q 006673 440 ARHIANTKAYGANVV-VAVN---MFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGGKGA--VDLGIAVQR-ACEN-VT 511 (636)
Q Consensus 440 ~kHIeNi~~fGvPvV-VAIN---rF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GGeGa--~eLA~aVv~-a~e~-~~ 511 (636)
.+.|+.++..|.++| |.++ .|..|.-+.++.+.++|.+.|+. +++.-|...|+... .+.+.++.+ +++. +.
T Consensus 57 ~~~i~~lk~~G~N~VRip~~~~~~~~~~~l~~ld~~v~~a~~~Giy-VIlDlH~~~g~~~~~~~~~~~~~w~~iA~ryk~ 135 (345)
T 3jug_A 57 STAIPAIAEQGANTIRIVLSDGGQWEKDDIDTVREVIELAEQNKMV-AVVEVHDATGRDSRSDLDRAVDYWIEMKDALIG 135 (345)
T ss_dssp HHHHHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCE-EEEEECTTTTCCCHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHcCCCEEEEEecCCCccCHHHHHHHHHHHHHHHHCCCE-EEEEeccCCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence 468999999999988 4444 56778889999999999999996 88887877766543 222222222 2221 11
Q ss_pred CCCcccCCC-CCCHHHHHHHHHHHhCCCceeeCHHHHHHHHHHHhCCCCCCCeeEeecCCC
Q 006673 512 QPLKFLYPL-DVSIKEKIDTIARSYGASGVEYSEEAEKQIEMYTGQGFSGLPICMAKTQYS 571 (636)
Q Consensus 512 s~fk~LY~~-~~~L~eKIetIA~IYGA~~V~~S~~A~kqLk~ie~lG~~~LPVCmAKTqyS 571 (636)
.+-..+|++ ++|... -+.-.|...+++-++.+.+.+.+ -||.+.=..||
T Consensus 136 ~~~~Vi~el~NEP~~~----------~~~~~w~~~~~~~i~~IR~~dp~-~~Iiv~g~~w~ 185 (345)
T 3jug_A 136 KEDTVIINIANEWYGS----------WDGAAWADGYIDVIPKLRDAGLT-HTLMVDAAGWG 185 (345)
T ss_dssp CTTTEEEECCTTCCCS----------SCHHHHHHHHHHHHHHHHHTTCC-SCEEEECBTTT
T ss_pred CCCeEEEEecCCCCCC----------CCHHHHHHHHHHHHHHHHhhCCC-CEEEEeCCCcc
Confidence 111234543 223210 00011223456677788888864 47777765555
No 483
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=26.94 E-value=44 Score=35.04 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.2
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGL 93 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL 93 (636)
++|.++.+.+ |.|.||||+.--|
T Consensus 28 ~~Ge~~~llG----psGsGKSTLLr~i 50 (359)
T 3fvq_A 28 DPGEILFIIG----ASGCGKTTLLRCL 50 (359)
T ss_dssp CTTCEEEEEE----STTSSHHHHHHHH
T ss_pred cCCCEEEEEC----CCCchHHHHHHHH
Confidence 5688888887 7799999986443
No 484
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=26.89 E-value=17 Score=36.11 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=12.4
Q ss_pred CceeEEccc-Ccccc
Q 006673 330 GTPVLVHAG-PFANI 343 (636)
Q Consensus 330 gtPa~VHgG-PFANI 343 (636)
..|++|||| ||+|.
T Consensus 42 ~~~vlVhGGG~~~~~ 56 (269)
T 3ll9_A 42 SSLMIVHGAGSFGHP 56 (269)
T ss_dssp SSEEEEECCGGGTHH
T ss_pred CCEEEEECCcHHHHH
Confidence 679999987 99887
No 485
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=26.89 E-value=45 Score=36.40 Aligned_cols=43 Identities=7% Similarity=0.069 Sum_probs=30.7
Q ss_pred HHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 439 LARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 439 L~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
...|.+.++.+++|++|++|+-.-......+.+.+..+.++..
T Consensus 123 t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~~ 165 (529)
T 2h5e_A 123 TRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKIG 165 (529)
T ss_dssp HHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCCE
T ss_pred HHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCCC
Confidence 4667778888999999999998764433334555665666764
No 486
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=26.85 E-value=26 Score=32.54 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.2
Q ss_pred EEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCc
Q 006673 71 YVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKK 104 (636)
Q Consensus 71 lilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~ 104 (636)
.|.|++ |.|+||||+.--|...+. .-|.+
T Consensus 4 ~v~IvG----~SGsGKSTL~~~L~~~~~-~~g~~ 32 (171)
T 2f1r_A 4 ILSIVG----TSDSGKTTLITRMMPILR-ERGLR 32 (171)
T ss_dssp EEEEEE----SCHHHHHHHHHHHHHHHH-HTTCC
T ss_pred EEEEEC----CCCCCHHHHHHHHHHHhh-hcCCc
Confidence 556666 569999999999988873 44543
No 487
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A
Probab=26.63 E-value=89 Score=31.09 Aligned_cols=80 Identities=18% Similarity=0.113 Sum_probs=50.5
Q ss_pred cceEEEEeeehhhhhcCCCCCccCCCCCcccccccCHHHHHHHHhHHHHHHHHHhhcCCcEEEEecC-CCC--CCHHHHH
Q 006673 393 PQCAVIVATIRALKMHGGGPQVVAGKPLDHAYLNENVALVEAGCVNLARHIANTKAYGANVVVAVNM-FAT--DSKAELN 469 (636)
Q Consensus 393 P~avVlVaTvRALK~HGG~~~~~~g~pL~~~l~~eNleaL~~G~~NL~kHIeNi~~fGvPvVVAINr-F~t--DT~aEI~ 469 (636)
-|.+-+|--+.+||-. . +++-.+++.++.+-| . |.|+=|.|-. +-. -|++|+.
T Consensus 94 AdEIDmVinig~lk~g--~----------~~~v~~ei~~v~~a~-----------~-~~~lKvIiEt~~L~~~~t~eei~ 149 (231)
T 3ndo_A 94 ATEIDMVIDVGAALAG--D----------LDAVSADITAVRKAV-----------R-AATLKVIVESAALLEFSGEPLLA 149 (231)
T ss_dssp CSEEEEECCHHHHHTT--C----------HHHHHHHHHHHHHHT-----------T-TSEEEEECCHHHHHHHTCHHHHH
T ss_pred CCEEEEEeehHhhhcc--c----------HHHHHHHHHHHHHHc-----------c-CCceEEEEECcccCCCCCHHHHH
Confidence 4667777777777642 1 222333344443333 1 5666666553 112 2799999
Q ss_pred HHHHHHHHcCCCeEEEcCccc-cCccch
Q 006673 470 AVRNAAMAAGAFDAVVCSHHA-HGGKGA 496 (636)
Q Consensus 470 ~v~e~c~~~Gv~~~avs~~wa-~GGeGa 496 (636)
...+.|.++|+..+=.|+.|. .||.--
T Consensus 150 ~a~~ia~~aGADfVKTSTGf~~~~gAt~ 177 (231)
T 3ndo_A 150 DVCRVARDAGADFVKTSTGFHPSGGASV 177 (231)
T ss_dssp HHHHHHHHTTCSEEECCCSCCTTCSCCH
T ss_pred HHHHHHHHHCcCEEEcCCCCCCCCCCCH
Confidence 999999999997555678897 777654
No 488
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=26.51 E-value=22 Score=41.51 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGL 93 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL 93 (636)
|.+|+|+||+. .|+||||++-..
T Consensus 34 P~~~l~viTGv----SGSGKSSLafdt 56 (842)
T 2vf7_A 34 PRDALVVFTGV----SGSGKSSLAFGT 56 (842)
T ss_dssp ESSSEEEEESS----TTSSHHHHHTTT
T ss_pred cCCCEEEEECC----CCCCHHHHHHHH
Confidence 78999999997 599999998763
No 489
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=26.48 E-value=25 Score=41.34 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=22.7
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
|++|+|+||+. .|+|||+++-.-.-|=
T Consensus 22 p~~~l~v~tG~----SGSGKSsLafdtl~ae 48 (916)
T 3pih_A 22 PKNRLVVITGV----SGSGKSSLAMDTIYAE 48 (916)
T ss_dssp ETTSEEEEEES----TTSSSHHHHTTTHHHH
T ss_pred CCCcEEEEECC----CCCcHHHHHHHHHHHH
Confidence 78999999997 6999999998765443
No 490
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=26.43 E-value=2.5e+02 Score=26.87 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=44.2
Q ss_pred HHhHHHHHHHHHhhcCCc-EEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEc-CccccCccchhHHHHHHHHHhhcCCC
Q 006673 435 GCVNLARHIANTKAYGAN-VVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVC-SHHAHGGKGAVDLGIAVQRACENVTQ 512 (636)
Q Consensus 435 G~~NL~kHIeNi~~fGvP-vVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs-~~wa~GGeGa~eLA~aVv~a~e~~~s 512 (636)
|-+=|.+-++++++.|+. +||+.+ . +.|++++.+.|+. ++.. +.+. +|-|. ++ .+++.++....
T Consensus 26 GkPli~~~l~~l~~~~~~~ivVv~~-----~----~~i~~~~~~~g~~-v~~~~~~~~-~Gt~~--~~-~~~~~l~~~~~ 91 (252)
T 3oam_A 26 GKPMIQWVYEQAMQAGADRVIIATD-----D----ERVEQAVQAFGGV-VCMTSPNHQ-SGTER--LA-EVVAKMAIPAD 91 (252)
T ss_dssp TEEHHHHHHHHHHHTTCSEEEEEES-----C----HHHHHHHHHTTCE-EEECCTTCC-SHHHH--HH-HHHHHTTCCTT
T ss_pred CEEHHHHHHHHHHhCCCCeEEEECC-----H----HHHHHHHHHcCCE-EEEcCCCCC-CcHHH--HH-HHHHhcCcCCC
Confidence 334577788899988864 566653 2 3456777788886 5554 3343 44443 22 23333321112
Q ss_pred CCcccCCCCCCH--HHHHHHHHH
Q 006673 513 PLKFLYPLDVSI--KEKIDTIAR 533 (636)
Q Consensus 513 ~fk~LY~~~~~L--~eKIetIA~ 533 (636)
+.=+...-|.|+ .+=|+.+.+
T Consensus 92 d~vlv~~gD~Pli~~~~i~~l~~ 114 (252)
T 3oam_A 92 HIVVNVQGDEPLIPPAIIRQVAD 114 (252)
T ss_dssp SEEEECCTTCTTCCHHHHHHHHH
T ss_pred CEEEEEeCCeeecCHHHHHHHHH
Confidence 223334445555 444555444
No 491
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=26.38 E-value=41 Score=35.79 Aligned_cols=32 Identities=31% Similarity=0.311 Sum_probs=27.3
Q ss_pred CcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEEE
Q 006673 69 GYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVVT 107 (636)
Q Consensus 69 gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~~ 107 (636)
-+.|-||+.| ||||||-=|++.| ...|+++..
T Consensus 114 ~~vI~VTGTn------GKTTTt~ml~~iL-~~~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVTGTD------GKTTTTAMVAHVL-KHLRKSPTV 145 (469)
T ss_dssp CCEEEEECSS------SHHHHHHHHHHHH-HHTTCCCEE
T ss_pred CCEEEEECCC------CHHHHHHHHHHHH-HHcCCCceE
Confidence 4699999987 9999999999999 578987643
No 492
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=26.27 E-value=49 Score=35.97 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.5
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
...+|+++|. -|.||||++.-|++.|+ ..+.++
T Consensus 34 ~~~lIvlvGl----pGSGKSTia~~La~~L~-~~~~d~ 66 (520)
T 2axn_A 34 SPTVIVMVGL----PARGKTYISKKLTRYLN-WIGVPT 66 (520)
T ss_dssp CCEEEEEECC----TTSSHHHHHHHHHHHHH-HTTCCE
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHHh-hcCCCe
Confidence 3468899997 59999999999999995 677765
No 493
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=25.98 E-value=23 Score=42.09 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.5
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQ 95 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~ 95 (636)
|++|+|+||+. .|+|||+++-.-.-
T Consensus 44 P~~~lvv~tG~----SGSGKSSLafdtly 68 (993)
T 2ygr_A 44 PRDALIVFTGL----SGSGKSSLAFDTIF 68 (993)
T ss_dssp ESSSEEEEEES----TTSSHHHHHTTTHH
T ss_pred cCCCEEEEECC----CCCcHHHHHHHHHH
Confidence 78999999997 59999999887543
No 494
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=25.90 E-value=25 Score=36.11 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=21.3
Q ss_pred CCCcEEEEeecCCCCCCCCcchhHHHHHHHH
Q 006673 67 ADGYYVVVGGITPTPLGEGKSTTTVGLCQAL 97 (636)
Q Consensus 67 ~~gklilVTaitPTP~GEGKtTttIGL~~aL 97 (636)
+.|+.|+|++ |.|.||||+.--|..-+
T Consensus 173 ~~G~~i~ivG----~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 173 QLERVIVVAG----ETGSGKTTLMKALMQEI 199 (361)
T ss_dssp HTTCCEEEEE----SSSSCHHHHHHHHHTTS
T ss_pred hcCCEEEEEC----CCCCCHHHHHHHHHhcC
Confidence 4588999998 44999999988776555
No 495
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=25.89 E-value=41 Score=36.48 Aligned_cols=32 Identities=22% Similarity=0.125 Sum_probs=27.3
Q ss_pred CCcEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcEE
Q 006673 68 DGYYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKVV 106 (636)
Q Consensus 68 ~gklilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~~ 106 (636)
+-++|-||+.| |||||+-=|.+.| ...|+++.
T Consensus 145 ~~~vI~VTGTn------GKTTT~~ml~~iL-~~~G~~~g 176 (535)
T 2wtz_A 145 RLTVIGITGTS------GKTTTTYLVEAGL-RAAGRVAG 176 (535)
T ss_dssp SSEEEEEESSS------CHHHHHHHHHHHH-HHTTCCEE
T ss_pred cceEEEeeCCC------ChHHHHHHHHHHH-HHCCCCEE
Confidence 45799999986 9999999999999 47788754
No 496
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=25.81 E-value=42 Score=35.96 Aligned_cols=29 Identities=31% Similarity=0.226 Sum_probs=25.0
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHHHhhhcCCcE
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQALGAFLDKKV 105 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~aL~~~lg~~~ 105 (636)
+.|-||+.+ ||||||-=|++.| ...|++.
T Consensus 123 ~~IaVTGTn------GKTTTt~ml~~iL-~~~g~~~ 151 (494)
T 4hv4_A 123 HGIAVAGTH------GKTTTTAMLSSIY-AEAGLDP 151 (494)
T ss_dssp EEEEEECSS------SHHHHHHHHHHHH-HHTTCCC
T ss_pred CEEEEecCC------ChHHHHHHHHHHH-HhcCCCC
Confidence 589999986 9999999999999 5788763
No 497
>4i6k_A Amidohydrolase family protein; enzyme function initiative, isomerase, structural; HET: CIT; 2.28A {Acinetobacter baumannii}
Probab=25.75 E-value=2e+02 Score=28.02 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=59.5
Q ss_pred HHHHHHHHHhhcCCcEEEEecCCCCCCHHHHHHHHHHHHHcCCCeEEEcCccccCc--cc-hhHHHHHHHHHhhcCCC--
Q 006673 438 NLARHIANTKAYGANVVVAVNMFATDSKAELNAVRNAAMAAGAFDAVVCSHHAHGG--KG-AVDLGIAVQRACENVTQ-- 512 (636)
Q Consensus 438 NL~kHIeNi~~fGvPvVVAINrF~tDT~aEI~~v~e~c~~~Gv~~~avs~~wa~GG--eG-a~eLA~aVv~a~e~~~s-- 512 (636)
-+.++++-++++|+||++=.. ++++..+.+.+++..++ + +-.|+...- .| ..+..+.+.++++. ++
T Consensus 138 ~~~~~~~~a~~~glpv~iH~~------~~~l~~~~~~l~~~p~~-~-Vi~H~g~p~~~~g~~~~~~~~~~~l~~~-~nv~ 208 (294)
T 4i6k_A 138 DWQKFLRNVESLNWQVELHAP------PKYLVQLLPQLNEYSFD-V-VIDHFGRVDPVKGIEDPDYQKFLSLLNV-KQHW 208 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEECC------HHHHHHHHHHHTTSSSC-E-EESGGGCCCTTTCTTCHHHHHHHHHCCT-TTEE
T ss_pred HHHHHHHHHHHcCCEEEEeeC------cchHHHHHHHHHHCCCC-E-EEECCCCCCCCCCCCCHHHHHHHHHHhC-CCEE
Confidence 578889999999999998653 45667777888777765 4 556775431 12 23456667776643 22
Q ss_pred -CCcccCCCCC------CHHHHHHHHHHHhCCCceeeC
Q 006673 513 -PLKFLYPLDV------SIKEKIDTIARSYGASGVEYS 543 (636)
Q Consensus 513 -~fk~LY~~~~------~L~eKIetIA~IYGA~~V~~S 543 (636)
.+.-+|.... ...+.++.+.+.+|.+.+.|.
T Consensus 209 ~k~Sg~~~~~~~~~~~~~~~~~l~~~~~~~g~dRll~g 246 (294)
T 4i6k_A 209 IKVSGFYRLGATPSNINIAQQAYNIFKEKGFLHKLIWG 246 (294)
T ss_dssp EECCCGGGSSSTTHHHHHHHHHHHHHHHHTCGGGEECC
T ss_pred EEecccccccccCCCchhhHHHHHHHHHHhCcccEEEe
Confidence 1222343321 123566666666788887763
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=25.69 E-value=84 Score=32.80 Aligned_cols=65 Identities=23% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHhhcCCcEEEEecCCCCCCHH--HHHHHHHHHH-H----cCCCeEEEcCccccCccchhHHHHHHHHHhhc
Q 006673 442 HIANTKAYGANVVVAVNMFATDSKA--ELNAVRNAAM-A----AGAFDAVVCSHHAHGGKGAVDLGIAVQRACEN 509 (636)
Q Consensus 442 HIeNi~~fGvPvVVAINrF~tDT~a--EI~~v~e~c~-~----~Gv~~~avs~~wa~GGeGa~eLA~aVv~a~e~ 509 (636)
+++.+...|.|+||++|+..--.+. ..+.+.+.++ . .+++ +..+. ++=|+|-.+|-+.+.+.+++
T Consensus 278 ~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~S--A~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 278 IAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP-ILFMS--ALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp HHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSC-EEECC--TTTCTTGGGHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCC-EEEEe--cccCCCHHHHHHHHHHHHHH
Confidence 4555567899999999998642221 1222322222 2 2555 44444 46688888888888877764
No 499
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=25.66 E-value=32 Score=33.32 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=19.1
Q ss_pred cEEEEeecCCCCCCCCcchhHHHHHHH
Q 006673 70 YYVVVGGITPTPLGEGKSTTTVGLCQA 96 (636)
Q Consensus 70 klilVTaitPTP~GEGKtTttIGL~~a 96 (636)
++|++++. .|.||||.+--|++.
T Consensus 3 ~~I~l~G~----~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGC----PGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECC----TTSSHHHHHHHHHHH
T ss_pred eEEEEECC----CCCCHHHHHHHHHHh
Confidence 57888885 699999998888774
No 500
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=25.64 E-value=1.1e+02 Score=27.95 Aligned_cols=46 Identities=9% Similarity=-0.066 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHhhcCCcEE-EEecCCCCCCHHHHHHHHHHHHHcCCC
Q 006673 436 CVNLARHIANTKAYGANVV-VAVNMFATDSKAELNAVRNAAMAAGAF 481 (636)
Q Consensus 436 ~~NL~kHIeNi~~fGvPvV-VAINrF~tDT~aEI~~v~e~c~~~Gv~ 481 (636)
+..+.+.++.+++.++++. |.+|++..++...-+.+.+..+..|.+
T Consensus 152 ~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~~~~~~~~l~~~~~~~ 198 (224)
T 1byi_A 152 INHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAP 198 (224)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHCCCcEEEEEEeCCCCchhhHHHHHHHHHHHcCCC
Confidence 3456666777778899966 889999887544444445555557765
Done!