Query 006674
Match_columns 636
No_of_seqs 387 out of 1726
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 12:51:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03547 Mem_trans: Membrane t 100.0 3.5E-42 7.6E-47 364.1 28.6 363 10-635 2-368 (385)
2 TIGR00946 2a69 he Auxin Efflux 100.0 2E-38 4.4E-43 330.8 28.5 130 500-635 171-300 (321)
3 PRK09903 putative transporter 100.0 1.1E-37 2.3E-42 325.3 30.1 126 503-635 165-290 (314)
4 COG0679 Predicted permeases [G 100.0 1.6E-36 3.4E-41 317.2 31.5 284 7-635 2-287 (311)
5 KOG2722 Predicted membrane pro 99.5 1.5E-14 3.3E-19 153.3 7.4 134 500-634 237-382 (408)
6 TIGR00841 bass bile acid trans 98.2 3E-06 6.5E-11 88.6 8.5 88 548-635 12-100 (286)
7 TIGR00832 acr3 arsenical-resis 97.5 0.0013 2.8E-08 70.6 13.5 122 505-633 4-134 (328)
8 COG0385 Predicted Na+-dependen 97.2 0.0017 3.6E-08 69.6 10.2 86 547-632 41-127 (319)
9 PF01758 SBF: Sodium Bile acid 97.0 0.0025 5.5E-08 62.6 8.3 84 550-633 4-89 (187)
10 PF13593 DUF4137: SBF-like CPA 95.7 0.047 1E-06 58.4 9.4 118 511-633 1-124 (313)
11 TIGR00841 bass bile acid trans 94.6 0.36 7.8E-06 50.8 11.9 138 7-152 133-276 (286)
12 PF05684 DUF819: Protein of un 91.5 5.8 0.00013 43.9 15.6 137 10-154 21-167 (378)
13 COG0798 ACR3 Arsenite efflux p 91.4 1.6 3.5E-05 47.5 10.8 125 502-634 9-143 (342)
14 PF03812 KdgT: 2-keto-3-deoxyg 86.6 3 6.6E-05 45.0 8.7 113 513-634 15-141 (314)
15 PRK04288 antiholin-like protei 85.9 8.1 0.00018 40.3 11.1 119 506-634 32-153 (232)
16 PRK10711 hypothetical protein; 85.6 4.5 9.9E-05 42.0 9.1 122 505-634 26-148 (231)
17 PF13593 DUF4137: SBF-like CPA 84.3 13 0.00028 40.0 12.2 113 13-128 163-283 (313)
18 COG1346 LrgB Putative effector 84.1 6.8 0.00015 40.7 9.5 123 501-633 24-149 (230)
19 TIGR00844 c_cpa1 na(+)/h(+) an 83.7 8 0.00017 46.7 11.2 96 500-601 27-130 (810)
20 TIGR00659 conserved hypothetic 83.1 10 0.00022 39.5 10.3 120 505-634 25-147 (226)
21 PF04172 LrgB: LrgB-like famil 82.6 10 0.00022 39.0 10.1 125 501-634 11-137 (215)
22 PF03601 Cons_hypoth698: Conse 81.7 19 0.00042 38.7 12.3 89 509-603 25-114 (305)
23 PRK12460 2-keto-3-deoxyglucona 76.9 7 0.00015 42.4 7.1 85 548-634 49-136 (312)
24 COG0798 ACR3 Arsenite efflux p 73.3 38 0.00083 37.2 11.5 131 2-136 172-313 (342)
25 TIGR00793 kdgT 2-keto-3-deoxyg 72.0 7.5 0.00016 42.1 5.8 85 549-635 50-142 (314)
26 PRK03562 glutathione-regulated 69.5 49 0.0011 39.0 12.3 115 502-625 21-138 (621)
27 TIGR03082 Gneg_AbrB_dup membra 62.1 97 0.0021 29.9 10.8 115 508-634 16-135 (156)
28 PRK03659 glutathione-regulated 60.9 93 0.002 36.4 12.4 85 509-601 236-320 (601)
29 COG0385 Predicted Na+-dependen 59.8 1.1E+02 0.0024 33.6 11.7 132 12-150 165-303 (319)
30 COG2855 Predicted membrane pro 57.6 51 0.0011 36.2 8.8 84 512-602 39-122 (334)
31 TIGR00932 2a37 transporter, mo 56.7 2.3E+02 0.0051 29.1 13.3 94 500-602 6-102 (273)
32 TIGR00832 acr3 arsenical-resis 54.5 91 0.002 33.8 10.2 50 77-128 254-303 (328)
33 TIGR00783 ccs citrate carrier 53.3 70 0.0015 35.4 9.1 77 17-94 207-291 (347)
34 COG3329 Predicted permease [Ge 51.8 1E+02 0.0022 33.8 9.7 62 500-564 206-267 (372)
35 PRK05326 potassium/proton anti 51.4 91 0.002 36.0 10.2 95 500-602 20-118 (562)
36 TIGR00698 conserved hypothetic 48.3 1.3E+02 0.0027 33.2 10.1 53 510-565 31-83 (335)
37 PRK03562 glutathione-regulated 47.9 2E+02 0.0043 34.0 12.3 83 511-601 241-323 (621)
38 PRK12585 putative monovalent c 47.4 45 0.00097 34.1 5.9 62 532-594 28-89 (197)
39 PRK03659 glutathione-regulated 46.8 2E+02 0.0042 33.8 12.0 114 503-625 22-138 (601)
40 PRK10669 putative cation:proto 46.7 2.4E+02 0.0052 32.5 12.6 94 500-601 20-114 (558)
41 PLN03159 cation/H(+) antiporte 42.5 3E+02 0.0064 33.9 13.0 85 500-590 57-149 (832)
42 COG5505 Predicted integral mem 36.5 5.9E+02 0.013 28.3 12.5 69 14-84 31-102 (384)
43 PF11299 DUF3100: Protein of u 36.2 73 0.0016 33.5 5.6 115 507-632 18-140 (241)
44 COG0598 CorA Mg2+ and Co2+ tra 32.7 2.4E+02 0.0053 30.3 9.2 58 6-71 234-296 (322)
45 PF10766 DUF2592: Protein of u 31.9 81 0.0018 24.5 3.8 25 502-526 3-27 (41)
46 TIGR00698 conserved hypothetic 31.1 3.1E+02 0.0067 30.2 9.7 46 533-579 269-314 (335)
47 TIGR03109 exosortase_1 exosort 30.9 2.1E+02 0.0045 30.4 8.2 105 510-618 110-217 (267)
48 PF03334 PhaG_MnhG_YufB: Na+/H 29.3 2.4E+02 0.0052 24.6 7.0 61 532-595 17-77 (81)
49 PLN03159 cation/H(+) antiporte 28.5 4.2E+02 0.009 32.6 11.2 32 36-67 313-344 (832)
50 PRK05326 potassium/proton anti 28.0 2.4E+02 0.0052 32.6 8.8 109 508-623 242-350 (562)
51 PRK10669 putative cation:proto 27.9 5.5E+02 0.012 29.6 11.6 83 510-600 248-330 (558)
52 PRK12460 2-keto-3-deoxyglucona 27.8 2.2E+02 0.0048 31.2 7.8 81 512-602 168-248 (312)
53 PF05982 DUF897: Domain of unk 27.6 3.9E+02 0.0084 29.6 9.6 93 501-601 167-264 (327)
54 PRK12674 putative monovalent c 27.6 2.6E+02 0.0057 25.3 7.1 74 517-594 11-85 (99)
55 PRK12586 putative monovalent c 27.2 2.4E+02 0.0053 27.6 7.2 78 515-594 14-92 (145)
56 PRK05771 V-type ATP synthase s 27.0 7.6E+02 0.016 29.2 12.7 39 23-62 374-412 (646)
57 PRK12670 putative monovalent c 26.5 2.1E+02 0.0045 26.2 6.3 74 517-594 10-84 (99)
58 PRK09546 zntB zinc transporter 26.4 1.2E+02 0.0025 32.6 5.4 24 44-67 268-291 (324)
59 TIGR03802 Asp_Ala_antiprt aspa 25.9 4.1E+02 0.0089 31.1 10.1 74 515-602 40-117 (562)
60 TIGR00844 c_cpa1 na(+)/h(+) an 25.2 3.8E+02 0.0082 33.1 9.8 109 511-623 265-378 (810)
61 PRK12587 putative monovalent c 25.1 4.3E+02 0.0094 25.0 8.3 77 517-594 14-90 (118)
62 COG0475 KefB Kef-type K+ trans 25.0 5E+02 0.011 28.9 10.2 117 502-624 22-141 (397)
63 PF05145 AmoA: Putative ammoni 24.5 7.4E+02 0.016 26.8 11.1 112 511-634 178-292 (318)
64 PF06942 GlpM: GlpM protein; 24.4 5E+02 0.011 24.4 8.3 43 11-57 27-69 (107)
65 PF03547 Mem_trans: Membrane t 24.3 3.4E+02 0.0074 29.2 8.6 95 512-612 8-102 (385)
66 PF03616 Glt_symporter: Sodium 24.1 4.9E+02 0.011 28.8 9.9 25 43-67 277-301 (368)
67 PF03390 2HCT: 2-hydroxycarbox 23.7 4.8E+02 0.01 29.8 9.7 77 16-92 272-356 (414)
68 PRK15060 L-dehydroascorbate tr 23.2 1.1E+03 0.025 26.7 12.8 115 500-630 263-389 (425)
69 PRK12675 putative monovalent c 23.2 3.7E+02 0.0081 24.8 7.3 76 517-594 7-82 (104)
70 PRK04972 putative transporter; 22.8 6.6E+02 0.014 29.5 11.0 142 5-150 3-181 (558)
71 PF12273 RCR: Chitin synthesis 22.5 75 0.0016 29.7 2.8 15 69-83 2-16 (130)
72 TIGR01300 CPA3_mnhG_phaG monov 22.4 3.5E+02 0.0077 24.5 6.9 62 532-594 18-79 (97)
73 PRK03818 putative transporter; 21.7 5.7E+02 0.012 29.9 10.2 82 515-602 35-120 (552)
74 PF01544 CorA: CorA-like Mg2+ 20.9 89 0.0019 31.8 3.2 22 46-67 240-261 (292)
75 PRK12671 putative monovalent c 20.3 4.2E+02 0.0091 25.2 7.1 62 532-594 34-95 (120)
No 1
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.5e-42 Score=364.08 Aligned_cols=363 Identities=30% Similarity=0.419 Sum_probs=279.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCC-cCcc-hHHHHHHHH-HHHHHHHHHH
Q 006674 10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTND-PYAM-NFRFIAADT-LQKIIMLFVL 86 (636)
Q Consensus 10 Il~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~d-l~~l-~~~~ilay~-l~~llvflll 86 (636)
+++.++|+|+++++||+++|+ |++++++.++++++|+|+++||++|..+++.+ .+++ ++.++..+. +..++.++++
T Consensus 2 v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
T PF03547_consen 2 VFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLLG 80 (385)
T ss_pred cHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 688999999999999999998 99999999999999999999999999999975 3334 444444333 2233333333
Q ss_pred HHHHHhhcCCCcchhhHhhhh-cccCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcC
Q 006674 87 GIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQF 165 (636)
Q Consensus 87 ~l~~r~~~~~~~~~~atv~aL-asfsNtgfIGiPL~~aLfG~~al~~lali~vv~~ivl~tlgl~L~E~~~a~~~~~~~~ 165 (636)
.++.++.+.. .++ ..++.+ ++|+|++++|+|++.++||+++..++.++.+++++++|+++..++|.++++.-..++.
T Consensus 81 ~~~~~~~~~~-~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~~ 158 (385)
T PF03547_consen 81 FLLSRLFRLP-KEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEEE 158 (385)
T ss_pred HHHHHhcCCC-ccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhccccccccccccc
Confidence 3444433322 232 334444 5899999999999999999999999999999999999999999999987766566666
Q ss_pred ccccccceeeeecCcccccCCccccccccccCCCCceEEEEeecCCCcCCCCCCCCCCCCCCCCCCCCcccccccCCCCC
Q 006674 166 PETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNP 245 (636)
Q Consensus 166 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (636)
+++..+..+.+.|++..+.++.++..+|.++++|++.+...+...++.++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 210 (385)
T PF03547_consen 159 PSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSV---------------------------- 210 (385)
T ss_pred ccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhh----------------------------
Confidence 6677888999999999999999999999999998776655432221100000
Q ss_pred CCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 006674 246 TPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNP 325 (636)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (636)
..+|+
T Consensus 211 -----------------------------------------~~~~~---------------------------------- 215 (385)
T PF03547_consen 211 -----------------------------------------STSPS---------------------------------- 215 (385)
T ss_pred -----------------------------------------ccCCc----------------------------------
Confidence 00000
Q ss_pred CCccccccccccccchhhhHHHHHHHHHHhhhhcccccCCccccchheeeecCCCCcccCCCCcccccccCCCCCCCCCC
Q 006674 326 EFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGR 405 (636)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (636)
+
T Consensus 216 -----------------------------------------------------------~-------------------- 216 (385)
T PF03547_consen 216 -----------------------------------------------------------P-------------------- 216 (385)
T ss_pred -----------------------------------------------------------c--------------------
Confidence 0
Q ss_pred CccchhhHhhhhcCCCCCCcCCCCCCCCCCCCcccccCCCCCCCCccccccCCCCccccccCCCCccccCccccccccCC
Q 006674 406 SDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAG 485 (636)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (636)
++ . +..+ .
T Consensus 217 -----~~--------------------~---------------------~~~~--------------------------~ 224 (385)
T PF03547_consen 217 -----SN--------------------S---------------------TGAE--------------------------Q 224 (385)
T ss_pred -----cc--------------------c---------------------chhh--------------------------h
Confidence 00 0 0000 0
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccc
Q 006674 486 MGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP 565 (636)
Q Consensus 486 ~~~~~p~~~~~~~~~l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~ 565 (636)
+ ..-+++...++.+++.++||+++++++|+++++++.+..+.+|.++.++++++|++++|++||++|+.|+..+
T Consensus 225 ~------~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~ 298 (385)
T PF03547_consen 225 K------SSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGP 298 (385)
T ss_pred h------hhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 0 0003356677888889999999999999999999433334445999999999999999999999999999865
Q ss_pred hhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCcccc
Q 006674 566 KIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILST 635 (636)
Q Consensus 566 ~l~~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~ASt 635 (636)
+....+++.....+++|+++.|++++++++++++++....++++++++|+|++.+++|++||.+++.+|.
T Consensus 299 ~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~~~~s~ 368 (385)
T PF03547_consen 299 RKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDEEEASS 368 (385)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCHHHHHH
Confidence 3334566666778999999999999999999999999999999999999999999999999999888764
No 2
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=2e-38 Score=330.79 Aligned_cols=130 Identities=49% Similarity=0.717 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHH
Q 006674 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~ 579 (636)
.+++.+|++++||+++|+++|++++++ |+++|+++.++++++|++++|+|||++|+.|+..+ .+++++.++..+
T Consensus 171 ~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~--~~~~~~~~~~~~ 244 (321)
T TIGR00946 171 MLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTPMALFSLGLALSPRK--IKLGVRDAILAL 244 (321)
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhh--hccChHHHHHHH
Confidence 345678899999999999999999999 99999999999999999999999999999998764 345678889999
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCcccc
Q 006674 580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILST 635 (636)
Q Consensus 580 liKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~ASt 635 (636)
++|++++|++++++..++++++...+++++++|||+|++++++|++||.|++++|+
T Consensus 245 ~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~~~aa~ 300 (321)
T TIGR00946 245 IVRFLVQPAVMAGISKLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDVELAST 300 (321)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875
No 3
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=1.1e-37 Score=325.34 Aligned_cols=126 Identities=17% Similarity=0.328 Sum_probs=115.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHH
Q 006674 503 MVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVR 582 (636)
Q Consensus 503 ~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liK 582 (636)
+.+|++++||+++|+++|++++++ |+++|++++++++++|++++|+|||++|++|+..+. ...+..+..+++|
T Consensus 165 ~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~---~~~~~~~~~~~~K 237 (314)
T PRK09903 165 SALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKF---EFSAEIAYNTFLK 237 (314)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---cccHHHHHHHHHH
Confidence 445678999999999999999999 999999999999999999999999999999998742 2235677889999
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCcccc
Q 006674 583 FLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILST 635 (636)
Q Consensus 583 LIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~ASt 635 (636)
++++|++++++++++++++.+.+++++++|||+|++++++|++||.|++.+|.
T Consensus 238 li~~P~i~~~~~~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~~~aa~ 290 (314)
T PRK09903 238 LILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTA 290 (314)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccHHHHHH
Confidence 99999999998888999999999999999999999999999999999998874
No 4
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=317.18 Aligned_cols=284 Identities=24% Similarity=0.502 Sum_probs=246.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcCcc-hHHHHHHHHHHHHHHHHH
Q 006674 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM-NFRFIAADTLQKIIMLFV 85 (636)
Q Consensus 7 Ml~Il~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~dl~~l-~~~~ilay~l~~llvfll 85 (636)
|..++..++|+|++|++||+++|+ +.++++..++++++|+|+++||++|+.+++.+.+.. ++.++.++++++++++++
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r~-~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKRF-GILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh-cccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999998 999999999999999999999999999999998877 788888888888888877
Q ss_pred HHHHHHhhcCCCcchhhHhhhh-cccCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhc
Q 006674 86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQ 164 (636)
Q Consensus 86 l~l~~r~~~~~~~~~~atv~aL-asfsNtgfIGiPL~~aLfG~~al~~lali~vv~~ivl~tlgl~L~E~~~a~~~~~~~ 164 (636)
..++.++.++++.++ ..++.+ +.|+|++|+|+|++..+||++++.+.+++..++++++++++.+.++..+.
T Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~------- 152 (311)
T COG0679 81 LALIGRFLFKLDKRE-TVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGG------- 152 (311)
T ss_pred HHHHHHHHhccchhh-HHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------
Confidence 766665555443332 335555 58999999999999999999999999999999999999999998864210
Q ss_pred CccccccceeeeecCcccccCCccccccccccCCCCceEEEEeecCCCcCCCCCCCCCCCCCCCCCCCCcccccccCCCC
Q 006674 165 FPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRN 244 (636)
Q Consensus 165 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (636)
T Consensus 153 -------------------------------------------------------------------------------- 152 (311)
T COG0679 153 -------------------------------------------------------------------------------- 152 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCcchhhcccCCCCCCCCCCCCCCCCccccccCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCC
Q 006674 245 PTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPN 324 (636)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (636)
T Consensus 153 -------------------------------------------------------------------------------- 152 (311)
T COG0679 153 -------------------------------------------------------------------------------- 152 (311)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccchhhhHHHHHHHHHHhhhhcccccCCccccchheeeecCCCCcccCCCCcccccccCCCCCCCCC
Q 006674 325 PEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSG 404 (636)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (636)
+
T Consensus 153 ------------------------------------------------------------~------------------- 153 (311)
T COG0679 153 ------------------------------------------------------------G------------------- 153 (311)
T ss_pred ------------------------------------------------------------C-------------------
Confidence 0
Q ss_pred CCccchhhHhhhhcCCCCCCcCCCCCCCCCCCCcccccCCCCCCCCccccccCCCCccccccCCCCccccCccccccccC
Q 006674 405 RSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADA 484 (636)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (636)
.
T Consensus 154 ----------------------------~--------------------------------------------------- 154 (311)
T COG0679 154 ----------------------------T--------------------------------------------------- 154 (311)
T ss_pred ----------------------------c---------------------------------------------------
Confidence 0
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 006674 485 GMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ 564 (636)
Q Consensus 485 ~~~~~~p~~~~~~~~~l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~ 564 (636)
+...+.+.|++++||+++|.++|+++++. |+++|++++++++++|++++|++|+++|+.|+..
T Consensus 155 -------------~~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 155 -------------NKSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL 217 (311)
T ss_pred -------------hhHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence 00124556789999999999999999999 9999999999999999999999999999999985
Q ss_pred chhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCcccc
Q 006674 565 PKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILST 635 (636)
Q Consensus 565 ~~l~~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~ASt 635 (636)
. .+....+.++....+|++++|++++++.+++|+++...+++++++|||+|++++++|++||.|++.++.
T Consensus 218 ~-~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~~laa~ 287 (311)
T COG0679 218 K-LKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDPRLAAS 287 (311)
T ss_pred h-hccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCChHHHHH
Confidence 3 233445555666667999999999999999999999999999999999999999999999999998874
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.52 E-value=1.5e-14 Score=153.28 Aligned_cols=134 Identities=21% Similarity=0.203 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhh-cC---CCCCc-HHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchH
Q 006674 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAF-RW---HVSMP-KIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSV 574 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAiiLGLilsll~~-~~---gI~LP-~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~ 574 (636)
..+..+|.+| +|+++|.++|+++...+. |. |-.-| ..+.+.+.++|+.++|+.|+++|..|....+...-+.+.
T Consensus 237 ~~~~~L~~i~-~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~ 315 (408)
T KOG2722|consen 237 SEKVILKEIF-APPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSV 315 (408)
T ss_pred hHHhhHHHhc-CchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceE
Confidence 3456667765 899999999999998731 10 11122 489999999999999999999999998765444445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---hC----CChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCccc
Q 006674 575 ATFSMAVRFLTGPAVMAAASIA---VG----LRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILS 634 (636)
Q Consensus 575 i~~i~liKLIL~PlL~lll~~l---lg----L~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~AS 634 (636)
++.+++.|+++.|.+.+.+... +| -|+....|+.|+.++|+|++.--+||.+|..++++|
T Consensus 316 iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~VllLq~~~PpAi~lg~itqL~g~~e~Ecs 382 (408)
T KOG2722|consen 316 IIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLLLQYASPPAINLGTITQLNGVAERECS 382 (408)
T ss_pred EEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhhhhhcCCchhhHHHHHHHhhhhHHHHH
Confidence 7778899999999998888532 22 367889999999999999999999999999877665
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=98.23 E-value=3e-06 Score=88.65 Aligned_cols=88 Identities=15% Similarity=0.052 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhhhccccchhh-hccchHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHh
Q 006674 548 AGLGMAMFSLGLFMALQPKII-ACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEY 626 (636)
Q Consensus 548 AatPLALf~IGlsLa~~~~l~-~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~Y 626 (636)
....++||.+|+.|...+... ..+.+......+.|++++|++++++..++++++.....+++++++|++.++++++++|
T Consensus 12 ~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~P~~~~s~v~t~~~ 91 (286)
T TIGR00841 12 ILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCCPGGTASNVFTYLL 91 (286)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeCCCchHHHHHHHHh
Confidence 347889999999999875321 2334567788899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccc
Q 006674 627 NVHPAILST 635 (636)
Q Consensus 627 G~d~e~ASt 635 (636)
|.|.++++.
T Consensus 92 ~gn~~la~~ 100 (286)
T TIGR00841 92 KGDMALSIS 100 (286)
T ss_pred CCCHhhhhH
Confidence 999888753
No 7
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=97.51 E-value=0.0013 Score=70.60 Aligned_cols=122 Identities=9% Similarity=0.059 Sum_probs=89.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH-HHHHhHHH------HHHHHHhhhccccchh-hhccchHHH
Q 006674 505 WRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS-ILSDAGLG------MAMFSLGLFMALQPKI-IACGNSVAT 576 (636)
Q Consensus 505 lkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~-~Lg~AatP------LALf~IGlsLa~~~~l-~~~~~k~i~ 576 (636)
+++.+....++++++|++..+. .|......-. .+.....| +.||.+|+.|...+.. ..+++|.+.
T Consensus 4 ~~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~ 76 (328)
T TIGR00832 4 LERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLI 76 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHH
Confidence 3455666777888888888876 3432221111 11223333 3577777888766532 245678889
Q ss_pred HHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCcc
Q 006674 577 FSMAVRFLTGPAVMAAASIA-VGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAIL 633 (636)
Q Consensus 577 ~i~liKLIL~PlL~lll~~l-lgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~A 633 (636)
...+..++++|++++++.++ +++++....-+++.+++|.++.+.+++...|.|..++
T Consensus 77 ~~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnvals 134 (328)
T TIGR00832 77 LSLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDPEYT 134 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCHHHH
Confidence 99999999999999999976 5999999999999999999999999999999886653
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.23 E-value=0.0017 Score=69.61 Aligned_cols=86 Identities=15% Similarity=0.158 Sum_probs=73.2
Q ss_pred HhHHHHHHHHHhhhccccch-hhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHH
Q 006674 547 DAGLGMAMFSLGLFMALQPK-IIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKE 625 (636)
Q Consensus 547 ~AatPLALf~IGlsLa~~~~-l~~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~ 625 (636)
.....+-||..|+.|...+. ....+++..+...+.-++++|++++++.++++++++...-+++.+++|.++.+-+++.-
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~l 120 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLLLGCCPGGVASNAMTYL 120 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHheeeCCCchhHHHHHHH
Confidence 45666777777777777652 22466888999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCc
Q 006674 626 YNVHPAI 632 (636)
Q Consensus 626 YG~d~e~ 632 (636)
++.|...
T Consensus 121 AkGnVal 127 (319)
T COG0385 121 AKGNVAL 127 (319)
T ss_pred hcCcHHH
Confidence 9988543
No 9
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=97.00 E-value=0.0025 Score=62.55 Aligned_cols=84 Identities=21% Similarity=0.215 Sum_probs=63.8
Q ss_pred HHHHHHHHhhhccccchhh-hccchHHHHHHHHHHHHHHHHHHHHH-HHhCCChhHHHHHHHHhhcchhhHHHHHHHHhC
Q 006674 550 LGMAMFSLGLFMALQPKII-ACGNSVATFSMAVRFLTGPAVMAAAS-IAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYN 627 (636)
Q Consensus 550 tPLALf~IGlsLa~~~~l~-~~~~k~i~~i~liKLIL~PlL~lll~-~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG 627 (636)
.-+.||.+|+.+...+... .++.+.+....+..++++|++++++. .++++++.....+++++++|.+..+.+++...|
T Consensus 4 l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l~~ 83 (187)
T PF01758_consen 4 LFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAACPGGPASNVFTYLAG 83 (187)
T ss_dssp HHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHHS-B-THHHHHHHHTT
T ss_pred hhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcCCcHHHHHHHHHHhC
Confidence 4577899999998875322 23456677788999999999999999 889999999999999999999999999999999
Q ss_pred CCCCcc
Q 006674 628 VHPAIL 633 (636)
Q Consensus 628 ~d~e~A 633 (636)
.|..++
T Consensus 84 Gd~~ls 89 (187)
T PF01758_consen 84 GDVALS 89 (187)
T ss_dssp --HHHH
T ss_pred CCcccc
Confidence 887654
No 10
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.74 E-value=0.047 Score=58.39 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH--HHHHHhHHHHHHHHHhhhccccchhh-hccchHHHHHHHHHHHHHH
Q 006674 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSI--SILSDAGLGMAMFSLGLFMALQPKII-ACGNSVATFSMAVRFLTGP 587 (636)
Q Consensus 511 NP~IiAiiLGLilsll~~~~gI~LP~~L~~~L--~~Lg~AatPLALf~IGlsLa~~~~l~-~~~~k~i~~i~liKLIL~P 587 (636)
|+.++++++++++... +|-|+.....+ +.....++.+-.|.-|+.|...+... ..+++....+...-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567788888888876 34444333333 24555668888888999998775322 4567888889999999999
Q ss_pred HHHHHHHHHhC--CChhHHHHHHHHhhcchhhHH-HHHHHHhCCCCCcc
Q 006674 588 AVMAAASIAVG--LRGTLLHVAIVQAALPQGIVP-FVFAKEYNVHPAIL 633 (636)
Q Consensus 588 lL~lll~~llg--L~~~~~~VaVL~AAmP~Av~~-~IfA~~YG~d~e~A 633 (636)
++++++..+++ ++++...-+++.++||+.+.+ .++.+..|.|...|
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~a~A 124 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNVALA 124 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCHHHH
Confidence 99999987763 677888888999999998665 57999999887654
No 11
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=94.65 E-value=0.36 Score=50.83 Aligned_cols=138 Identities=8% Similarity=0.054 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHh---HHHHHHHhhcC--CcCcchHHHHHHHHHHHHH
Q 006674 7 LYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAV---PLLSFHFISTN--DPYAMNFRFIAADTLQKII 81 (636)
Q Consensus 7 Ml~Il~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VAL---PALLF~~ia~~--dl~~l~~~~ilay~l~~ll 81 (636)
+..++..+.-+++=+.+|.+++|++ +...+.+.+ .-.++. =++++..++.. .+.+..+..+++..+-.++
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~----p~~~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~ 207 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKL----PQIAKIILK-VGLISVFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLA 207 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHH
Confidence 3344444555566678899998872 223333333 222222 12223223222 1212234555555555566
Q ss_pred HHHHHHHHHHhhcCCCcchhhHhhhh-cccCcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 006674 82 MLFVLGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLF 152 (636)
Q Consensus 82 vflll~l~~r~~~~~~~~~~atv~aL-asfsNtgfIGiPL~~aLfG~~al~~lali~vv~~ivl~tlgl~L~ 152 (636)
.|++++++.+..+.+..+ ..+ .++ ++.-|++ +|++++...|+++...+.+.+.+.++++-..+..+.-
T Consensus 208 ~~~~g~~~a~~~~l~~~~-~~t-~~~~~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~~ 276 (286)
T TIGR00841 208 GFLLGYLLAKLAGLPWAR-CRT-ISIEVGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLFL 276 (286)
T ss_pred HHHHHHHHHHHhCCCHhh-hee-eeeeeecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555543322112 122 344 4678988 9999999999988888788788888777666655543
No 12
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=91.49 E-value=5.8 Score=43.90 Aligned_cols=137 Identities=15% Similarity=0.165 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcCcc---hHHHHHHHHHHHHHHHHHH
Q 006674 10 VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLFVL 86 (636)
Q Consensus 10 Il~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~dl~~l---~~~~ilay~l~~llvflll 86 (636)
++..+-|+.+.+++|.++.-. |+++......+-.+|..+.+|+.++-.+.+.|+.++ -++.+++|+++++.+.+..
T Consensus 21 ~f~~l~~~vl~~~~~~~lsnl-gli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~~g~viG~ 99 (378)
T PF05684_consen 21 FFKYLPGAVLCYLLGMLLSNL-GLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGAVGTVIGA 99 (378)
T ss_pred hHhhcCHHHHHHHHHHHHHHC-CCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345667888999999999998 999544556788999999999999999999999877 4788888988887666433
Q ss_pred HH-HHHhhcC-CCcchhhHhhhhc-cc----CcccccHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 006674 87 GI-WTNFTKN-GSLEWMITIFSLS-TL----PNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEY 154 (636)
Q Consensus 87 ~l-~~r~~~~-~~~~~~atv~aLa-sf----sNtgfIGiPL~~aLfG~~al~~lali~vv~~ivl~tlgl~L~E~ 154 (636)
.+ +..+... ....|. ..-.++ ++ .|..-++ ..++... ..+....+.++++......+++-.
T Consensus 100 ~va~~l~~~~l~~~~wk-~ag~l~gsyiGGs~N~~Av~-----~al~~~~-~~~~a~~aaDnv~~~~~~~~l~~l 167 (378)
T PF05684_consen 100 VVAFLLFGGFLGPEGWK-IAGMLAGSYIGGSVNFVAVA-----EALGVSD-SLFAAALAADNVVMALWFAFLLAL 167 (378)
T ss_pred HHHHHHHhhcccchHHH-HHHHHHhcccCchhHHHHHH-----HHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1222221 112232 222232 22 3433332 2355443 455666777777665555555444
No 13
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=91.39 E-value=1.6 Score=47.54 Aligned_cols=125 Identities=13% Similarity=0.095 Sum_probs=88.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHH--HHHHhHHHHHHHHHhhh---ccccc----hhhhccc
Q 006674 502 IMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSIS--ILSDAGLGMAMFSLGLF---MALQP----KIIACGN 572 (636)
Q Consensus 502 ~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~--~Lg~AatPLALf~IGls---La~~~----~l~~~~~ 572 (636)
...+.|.+.-=+++++++|+.+... .|+ +.+.+. ..++..+|++.-.+=+. |...+ +....+.
T Consensus 9 l~~~dk~l~~wv~l~i~~Gi~lG~~-------~p~-~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~ 80 (342)
T COG0798 9 LSFLDKYLTLWVFLAIAIGILLGVH-------FPG-LAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDP 80 (342)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc-------ccc-hhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcc
Confidence 4556666655688889999887765 455 344444 45566666654333221 22221 1123457
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCccc
Q 006674 573 SVATFSMAVRFLTGPAVMAAASIA-VGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILS 634 (636)
Q Consensus 573 k~i~~i~liKLIL~PlL~lll~~l-lgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~AS 634 (636)
|.....++.-.++.|++++.++++ ++..++...-+++....||-.++.+++.--+.|.|.++
T Consensus 81 k~L~lsL~~Nwii~P~lm~~la~~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~~~tl 143 (342)
T COG0798 81 KPLILSLFVNWIIGPLLMFALAWFFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDRELTL 143 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcHhhhh
Confidence 778889999999999999999864 56667788888999999999999999999999988764
No 14
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=86.61 E-value=3 Score=45.05 Aligned_cols=113 Identities=15% Similarity=0.225 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHH------HHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHH
Q 006674 513 NTYSSLIGLVWSLIAFRWHVSMPKII------EKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTG 586 (636)
Q Consensus 513 ~IiAiiLGLilsll~~~~gI~LP~~L------~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~ 586 (636)
+++-.++|.+++-+ .|+.+ .+.+-.=+.+-..+-+|+.|.++..+. .....|+-...++.|+++.
T Consensus 15 mvVPLllgalinTf-------~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~--~~~~lkkg~~ll~~K~~~~ 85 (314)
T PF03812_consen 15 MVVPLLLGALINTF-------FPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKS--AGKVLKKGGVLLLVKFIIG 85 (314)
T ss_pred eHHHHHHHHHHHhc-------CCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhh--hhHHHHhhhHHHHHHHHHH
Confidence 34555566666655 23332 222222234455667888999988764 2345667788899999999
Q ss_pred HHHHHHHHHHhCCChh------HHHHHHHHhhcch--hhHHHHHHHHhCCCCCccc
Q 006674 587 PAVMAAASIAVGLRGT------LLHVAIVQAALPQ--GIVPFVFAKEYNVHPAILS 634 (636)
Q Consensus 587 PlL~lll~~llgL~~~------~~~VaVL~AAmP~--Av~~~IfA~~YG~d~e~AS 634 (636)
-++.+++.+++|.++. -...+.+.+||-. +....-+..+||-+.|.++
T Consensus 86 ~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D~gA 141 (314)
T PF03812_consen 86 ALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEEDVGA 141 (314)
T ss_pred HHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHHhHH
Confidence 9999999999988763 2445555566544 3445567889998888765
No 15
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=85.87 E-value=8.1 Score=40.26 Aligned_cols=119 Identities=11% Similarity=0.032 Sum_probs=81.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHH
Q 006674 506 RKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (636)
Q Consensus 506 kkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL 585 (636)
|..+.||+++++++-+.+-.. .+++..+. .+--+++...-.| |-.+++.=|.++.+..++.++.+...+++=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999988877665544 16665553 3344444444333 566777888888766677888888888888888
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHH---HHHHHhCCCCCccc
Q 006674 586 GPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPF---VFAKEYNVHPAILS 634 (636)
Q Consensus 586 ~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~---IfA~~YG~d~e~AS 634 (636)
.-...+.+++++|++.+.... -+|-++++. -++++.|..+.+++
T Consensus 107 ~i~s~~~la~~lgl~~~~~~S-----l~pKSVTtPIAm~is~~iGG~psLtA 153 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMAS-----MLPQAATTAIALPVSAGIGGIKEITS 153 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHH-----HhhHhhhHHHHHHHHHHhCCcHHHHH
Confidence 888888888999999864443 344444433 36788887776654
No 16
>PRK10711 hypothetical protein; Provisional
Probab=85.59 E-value=4.5 Score=42.03 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=83.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHH
Q 006674 505 WRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFL 584 (636)
Q Consensus 505 lkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLI 584 (636)
++..+.||++++.++-+++-.. .|++..+. .+--+++...-.| |-.+++.=|.++.+..++.++.+...+++=-+
T Consensus 26 ~~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~ 100 (231)
T PRK10711 26 FKFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSV 100 (231)
T ss_pred cCCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3666779999988776655544 16666554 3344666555444 56778888988876667788888888888888
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhh-cchhhHHHHHHHHhCCCCCccc
Q 006674 585 TGPAVMAAASIAVGLRGTLLHVAIVQAA-LPQGIVPFVFAKEYNVHPAILS 634 (636)
Q Consensus 585 L~PlL~lll~~llgL~~~~~~VaVL~AA-mP~Av~~~IfA~~YG~d~e~AS 634 (636)
+.-...+.+++++|++.+....+.--+. +|.| .-++++.|.++.+++
T Consensus 101 v~i~s~~~l~~~lg~~~~~~~Sl~pkSVTtPIA---m~is~~iGG~~sLta 148 (231)
T PRK10711 101 VAMVTGTAVALWMGATPEIAASILPKSVTTPIA---MAVGGSIGGIPAISA 148 (231)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHhhhhhhHHHH---HHHHHHhCCcHHHHH
Confidence 8888888889999999876554433322 2332 236788888776654
No 17
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=84.28 E-value=13 Score=39.98 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcC---C-cCcchHHHHHHHHHHHHHHHHH---
Q 006674 13 AVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN---D-PYAMNFRFIAADTLQKIIMLFV--- 85 (636)
Q Consensus 13 ~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~---d-l~~l~~~~ilay~l~~llvfll--- 85 (636)
..+-+++=..+|-+++|+++-.-+. .+..-+.+-.+++-.+++.++++. + ..++++..++.....++..+++
T Consensus 163 L~~~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 241 (313)
T PF13593_consen 163 LVLTVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLV 241 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334444456788888774433222 344555667777777777777665 2 2234333222222212222211
Q ss_pred -HHHHHHhhcCCCcchhhHhhhhcccCcccccHHHHHHHHhccc
Q 006674 86 -LGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEY 128 (636)
Q Consensus 86 -l~l~~r~~~~~~~~~~atv~aLasfsNtgfIGiPL~~aLfG~~ 128 (636)
.....|..+-.+.| .....+|+--.+.-+|+|++..+|++.
T Consensus 242 ~~~~~~r~~~~~~~d--~iA~~F~gs~Ksl~~gvpl~~~lf~~~ 283 (313)
T PF13593_consen 242 LGWLAARLLGFSRPD--RIAVLFCGSQKSLALGVPLASILFPGH 283 (313)
T ss_pred HHHHHHhhcCCChhh--EEEEEEEcCcCcchhHHHHHHHHcccc
Confidence 12233322211112 222334555789999999999999874
No 18
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=84.09 E-value=6.8 Score=40.73 Aligned_cols=123 Identities=15% Similarity=0.092 Sum_probs=84.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHH
Q 006674 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (636)
Q Consensus 501 l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~l 580 (636)
+.+=.|+.+.||.+++.++.+.+-.. .|++..+. .+--++|-.--.| |-.++..=|..+.++.++.|+.+...++
T Consensus 24 l~~r~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~Y-~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~ 98 (230)
T COG1346 24 LYKRTKSPFLNPLLVATVLLIAFLLL---FGISYEDY-MKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVL 98 (230)
T ss_pred HHHhcCCcccchHHHHHHHHHHHHHH---cCCCHHHH-hcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667889999999888776665 16665542 3344555555556 7778888888887667788888888888
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHH---HHHHhCCCCCcc
Q 006674 581 VRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFV---FAKEYNVHPAIL 633 (636)
Q Consensus 581 iKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~I---fA~~YG~d~e~A 633 (636)
+=-++.=...+++.+++|++++... +-+|-++++.+ .+++.|.-++.+
T Consensus 99 vGs~~ai~s~~llak~~g~~~~~~~-----Sl~PkSvTTpiAm~vs~~iGGip~lt 149 (230)
T COG1346 99 VGSVVAIISGVLLAKLFGLSPELIL-----SLLPKSVTTPIAMEVSESIGGIPALT 149 (230)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHH-----HhcccccccHHHHHHHHhcCCchHHH
Confidence 8877777788888899999986544 34455444433 456666655544
No 19
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=83.74 E-value=8 Score=46.74 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=60.1
Q ss_pred HHHHHHH-HHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHH-----HHHHHHHHHhHHHHHHHHHhhhccccchhhhccch
Q 006674 500 ILIMVWR-KLIRNPNTYSSLIGLVWSLIAFRWHVSMPKII-----EKSISILSDAGLGMAMFSLGLFMALQPKIIACGNS 573 (636)
Q Consensus 500 ~l~~vlk-kllkNP~IiAiiLGLilsll~~~~gI~LP~~L-----~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k 573 (636)
.+...++ ++-..-+++.+++|+++... ++.+..+. +..+..+...+..+.||..|+.|.... .+..|+
T Consensus 27 l~s~~lkeRl~Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~--Lrr~wr 100 (810)
T TIGR00844 27 LVSLFVKEKLYIGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKY--MLKHWV 100 (810)
T ss_pred HHHHHHHhhcCCcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHhHH
Confidence 3344455 55556788999999998876 44444333 223333888999999999999998753 345566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-H-hCCCh
Q 006674 574 VATFSMAVRFLTGPAVMAAASI-A-VGLRG 601 (636)
Q Consensus 574 ~i~~i~liKLIL~PlL~lll~~-l-lgL~~ 601 (636)
.++.++++=+.+.=+++.++++ + +|++.
T Consensus 101 sV~rLl~~~M~lT~livAL~a~~Li~GL~~ 130 (810)
T TIGR00844 101 SVTMLLVPVMTSGWLVIALFVWILVPGLNF 130 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 6665555555554444444443 3 36663
No 20
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=83.09 E-value=10 Score=39.45 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=80.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHH
Q 006674 505 WRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFL 584 (636)
Q Consensus 505 lkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLI 584 (636)
++..+.||++++.++-+.+-.. .|++..+. .+--+++... ..-|..+++.=|.++.+..++.++.+...+++=-+
T Consensus 25 ~~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~l-LgPAtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~ 99 (226)
T TIGR00659 25 FKRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDL-LGPAVVALAIPLYKQLPQIKKYWKEIILNVAVGSV 99 (226)
T ss_pred cCCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHh-hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3677889999998877665544 16665554 3444555433 33466777888888876667778888887777777
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHH---HHHHHhCCCCCccc
Q 006674 585 TGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPF---VFAKEYNVHPAILS 634 (636)
Q Consensus 585 L~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~---IfA~~YG~d~e~AS 634 (636)
+.-...+.+++++|++++.... -+|=++++. -.+++.|.++.+++
T Consensus 100 ~~~~s~~~la~~lg~~~~i~~S-----l~pkSvTtpiAm~vs~~iGG~~sLta 147 (226)
T TIGR00659 100 IAIISGTLLALLLGLGPEIIAS-----LLPKSVTTPIAMHVSEMIGGIPAVTA 147 (226)
T ss_pred HHHHHHHHHHHHHCcCHHHHHH-----hhhHHhhHHHHHHHHHHhCChHHHHH
Confidence 7778888888999999765443 334333332 36778887776654
No 21
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=82.58 E-value=10 Score=39.02 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=83.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHH-HHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHH
Q 006674 501 LIMVWRKLIRNPNTYSSLIGL-VWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (636)
Q Consensus 501 l~~vlkkllkNP~IiAiiLGL-ilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~ 579 (636)
+.+-+++.+.||.+++.++-+ ++.++ |++..+.. +--+++...-. -|-.+++.-|.++.+..++.++.+...+
T Consensus 11 l~~r~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y~-~gg~~l~~lLg-PatVALAvPLY~~~~~l~~~~~~il~~~ 84 (215)
T PF04172_consen 11 LYKRFKSPFLNPLLIAIVLIIAFLLLT----GIPYEDYM-QGGDILSFLLG-PATVALAVPLYRQRRLLKKNWIPILVGV 84 (215)
T ss_pred HHHHcCCCcccHHHHHHHHHHHHHHHH----CCCHHHHH-HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344446667799999988744 44555 77766544 34555544444 4588899999988766677788888888
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHh-hcchhhHHHHHHHHhCCCCCccc
Q 006674 580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQA-ALPQGIVPFVFAKEYNVHPAILS 634 (636)
Q Consensus 580 liKLIL~PlL~lll~~llgL~~~~~~VaVL~A-AmP~Av~~~IfA~~YG~d~e~AS 634 (636)
+.=-++.-...+.+++++|++++....+.--+ .+|.| .-++++.|.++.+++
T Consensus 85 ~~g~~~~~~~~~~l~~~lgl~~~~~~Sl~pkSVTtpiA---i~is~~iGG~~sLta 137 (215)
T PF04172_consen 85 LVGSLVSIFSAVLLARLLGLSPEIILSLAPKSVTTPIA---IEISEQIGGIPSLTA 137 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHhhHHHH---HHHHHHhCChHHHHH
Confidence 88888888888888899999886554433222 12332 235677777665543
No 22
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=81.67 E-value=19 Score=38.75 Aligned_cols=89 Identities=15% Similarity=0.151 Sum_probs=62.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHH
Q 006674 509 IRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPA 588 (636)
Q Consensus 509 lkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~Pl 588 (636)
.-.+.++|+++|+++.-+ -+..|+.+..-++.-.+....++...+|..+...+. ...++..+.. .++=.++.=.
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i-~~~G~~~~~~-~~~~v~~~~~ 98 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDI-LALGWKGLLI-IIIVVILTFL 98 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHH-HHhCccHHHH-HHHHHHHHHH
Confidence 446889999999999942 257889999999999999999999999999988752 2333433333 3333333334
Q ss_pred HHHHHH-HHhCCChhH
Q 006674 589 VMAAAS-IAVGLRGTL 603 (636)
Q Consensus 589 L~lll~-~llgL~~~~ 603 (636)
+.+.+. .++++|...
T Consensus 99 ~~~~lg~r~~~l~~~~ 114 (305)
T PF03601_consen 99 LTYWLGRRLFGLDRKL 114 (305)
T ss_pred HHHHHHHHHhCCCHHH
Confidence 444555 788888653
No 23
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=76.94 E-value=7 Score=42.37 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=58.3
Q ss_pred hHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-HHHHHHHhhcch--hhHHHHHHH
Q 006674 548 AGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGTL-LHVAIVQAALPQ--GIVPFVFAK 624 (636)
Q Consensus 548 AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~~~-~~VaVL~AAmP~--Av~~~IfA~ 624 (636)
+-..+=+|++|.++..+. .....++-...++.|+++.-++.+++..++|.++.. ...+.+.+||=. +....-++.
T Consensus 49 ~il~~~~~~~Ga~I~~k~--~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~~Gls~laiiaa~~~~Ng~ly~al~~ 126 (312)
T PRK12460 49 PLLGAFLLCMGAQISLKA--APQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGIFGLSGLAIVAAMSNSNGGLYAALMG 126 (312)
T ss_pred HHHHHHHHHhcCeeeccc--cchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccccchHHHHHHHHHhcCcHHHHHHHHH
Confidence 344556788999988754 233455666788999999999999998998877653 334445555532 233334589
Q ss_pred HhCCCCCccc
Q 006674 625 EYNVHPAILS 634 (636)
Q Consensus 625 ~YG~d~e~AS 634 (636)
|||-++|..+
T Consensus 127 ~yG~~~d~gA 136 (312)
T PRK12460 127 EFGDERDVGA 136 (312)
T ss_pred HcCCHhhhhH
Confidence 9999888765
No 24
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=73.30 E-value=38 Score=37.25 Aligned_cols=131 Identities=14% Similarity=0.087 Sum_probs=67.3
Q ss_pred CcHHHHHH--HHHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcC--CcCcc--hHHHHHHH
Q 006674 2 ITWKDLYL--VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN--DPYAM--NFRFIAAD 75 (636)
Q Consensus 2 i~~~dMl~--Il~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~--dl~~l--~~~~ilay 75 (636)
|+|++... ++...+|+.+-+.-=|...|+ +--+ -..+.+-...--+++++|++.-+.-- +=+.+ ++.-++-.
T Consensus 172 v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~-kg~~-~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~li 249 (342)
T COG0798 172 VPFWTIAKSVLLYLGIPLIAGVLTRYILIKK-KGRE-WYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLI 249 (342)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccch-HHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHH
Confidence 45666543 555677777777777777776 3222 12344444455567777766532211 11122 22222211
Q ss_pred ----HHHHHHHHHHHHHHHHhhcCCCcchhhHhhhhcccCcccccHHHHHHHHhc-cchhhHHHHH
Q 006674 76 ----TLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYG-EYSGSLMVQV 136 (636)
Q Consensus 76 ----~l~~llvflll~l~~r~~~~~~~~~~atv~aLasfsNtgfIGiPL~~aLfG-~~al~~lali 136 (636)
.+...+.|.+.+...+..+-+..+ .+-..+++-||.-=+.++++.++|| +.+...+..+
T Consensus 250 AIpl~iy~~~~~~i~~~i~k~lgl~y~~--~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vi 313 (342)
T COG0798 250 AIPLLIYFLLMFFISYFIAKALGLPYED--AAALVFTGASNNFELAIAVAIALFGLTSGAALATVV 313 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChhh--hhceeeeeccccHHHHHHHHHHhcCccccchhhhhc
Confidence 222223333333444433322122 3334555669999999999999999 5555444433
No 25
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=72.03 E-value=7.5 Score=42.07 Aligned_cols=85 Identities=16% Similarity=0.083 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHHHHhCCCh-----h-HHHHHHHHhhcch--hhHHH
Q 006674 549 GLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASIAVGLRG-----T-LLHVAIVQAALPQ--GIVPF 620 (636)
Q Consensus 549 atPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~-----~-~~~VaVL~AAmP~--Av~~~ 620 (636)
-..+=+|++|.++..+. .....++-...++.|+++.-++.+++..++|.++ . -...+.+.+||=. +....
T Consensus 50 il~~~l~~~Ga~I~~k~--~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~ 127 (314)
T TIGR00793 50 ILAVWFFCMGASIDLSA--TGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYA 127 (314)
T ss_pred HHHHHHHHhCCeeeecc--cchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHH
Confidence 34455788899888753 2233455566778899999999999999998776 2 2334445555532 23333
Q ss_pred HHHHHhCCCCCcccc
Q 006674 621 VFAKEYNVHPAILST 635 (636)
Q Consensus 621 IfA~~YG~d~e~ASt 635 (636)
-++.|||-++|..+.
T Consensus 128 aL~~qyGd~~D~gA~ 142 (314)
T TIGR00793 128 SIMQQYGTKEEAGAF 142 (314)
T ss_pred HHHHHcCCHhhhhhh
Confidence 459999998887653
No 26
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=69.50 E-value=49 Score=38.95 Aligned_cols=115 Identities=14% Similarity=0.143 Sum_probs=65.3
Q ss_pred HHHHHHHHhhHHHHHHHH-HHHHHHHhhcCCCCC-cHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHH
Q 006674 502 IMVWRKLIRNPNTYSSLI-GLVWSLIAFRWHVSM-PKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (636)
Q Consensus 502 ~~vlkkllkNP~IiAiiL-GLilsll~~~~gI~L-P~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~ 579 (636)
..+.|+ ++-|.+++.++ |+++.-. ++.+ +. .+.+..++.....+-||.+|+-+.... . +...+.+....
T Consensus 21 ~~l~~r-l~lp~vlgyilaGillGP~----~lg~i~~--~~~i~~laelGvv~LlF~iGLEl~~~~-l-~~~~~~~~~~g 91 (621)
T PRK03562 21 VPIAVR-LGLGSVLGYLIAGCIIGPW----GLRLVTD--VESILHFAEFGVVLMLFVIGLELDPQR-L-WKLRRSIFGGG 91 (621)
T ss_pred HHHHHH-hCCChHHHHHHHHHHhCcc----cccCCCC--HHHHHHHHHHHHHHHHHHHHhCcCHHH-H-HHHHHHHHHHH
Confidence 444454 68888888765 5555432 2221 21 245788999999999999999988754 2 22334444444
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHH-HHHHHhhcchhhHHHHHHHH
Q 006674 580 AVRFLTGPAVMAAASIAVGLRGTLLH-VAIVQAALPQGIVPFVFAKE 625 (636)
Q Consensus 580 liKLIL~PlL~lll~~llgL~~~~~~-VaVL~AAmP~Av~~~IfA~~ 625 (636)
..-+++.-++.+.+.+++|++..... +.+.++...+++..-++.++
T Consensus 92 ~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SStaiv~~~L~e~ 138 (621)
T PRK03562 92 ALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSSTAIAMQAMNER 138 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444455567777654322 22233334445555555543
No 27
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=62.09 E-value=97 Score=29.91 Aligned_cols=115 Identities=16% Similarity=0.101 Sum_probs=59.7
Q ss_pred HHhhH--HHHH-HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhh-hccchHHHHHHHHHH
Q 006674 508 LIRNP--NTYS-SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKII-ACGNSVATFSMAVRF 583 (636)
Q Consensus 508 llkNP--~IiA-iiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~-~~~~k~i~~i~liKL 583 (636)
.++-| .+++ ++++.++++. ....+++|..+....+.+-++ .+|..+....... .+.+...+..++.=+
T Consensus 16 ~l~~Pa~~llG~mi~~~~~~~~-~~~~~~~P~~~~~~~qviiG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~~l 87 (156)
T TIGR03082 16 LLGLPAAWLLGPLLAGAVLSLA-GGLEITLPPWLLALAQVVIGI-------LIGSRFTREVLAELKRLWPAALLSTVLLL 87 (156)
T ss_pred HHCCCcHHHHHHHHHHHHHHhc-CCccCCCCHHHHHHHHHHHHH-------HHHccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544 4443 4444555554 112467888776665544332 3455555432111 111122222333333
Q ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHH-HHHHHHhCCCCCccc
Q 006674 584 LTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVP-FVFAKEYNVHPAILS 634 (636)
Q Consensus 584 IL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~-~IfA~~YG~d~e~AS 634 (636)
++.=+..+.+.++.++|.. ..+++.+|=|... .++|+++|.|+...+
T Consensus 88 ~~~~~~~~~l~~~~~~~~~----ta~La~~PGGl~~m~~~A~~~gad~~~V~ 135 (156)
T TIGR03082 88 ALSALLAWLLARLTGVDPL----TAFLATSPGGASEMAALAAELGADVAFVA 135 (156)
T ss_pred HHHHHHHHHHHHHHCCCHH----HHHHHhCCchHHHHHHHHHHhCCCHHHHH
Confidence 3333344444456677653 3467889987765 568899999977654
No 28
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=60.91 E-value=93 Score=36.45 Aligned_cols=85 Identities=16% Similarity=0.106 Sum_probs=59.7
Q ss_pred HhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHH
Q 006674 509 IRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPA 588 (636)
Q Consensus 509 lkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~Pl 588 (636)
=.++.+-|.++|++++-. +.-..++..++.+.+...|+=.+.+|+.+.... ....+..+...++..+++-++
T Consensus 236 Gls~~LGAFlaGl~l~~s------~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~--l~~~~~~il~~~~~~l~~K~~ 307 (601)
T PRK03659 236 GLSMALGTFIAGVLLAES------EYRHELEIAIEPFKGLLLGLFFISVGMALNLGV--LYTHLLWVLISVVVLVAVKGL 307 (601)
T ss_pred CccHHHHHHHHHHHhcCC------chHHHHHHHHHHHHHHHHHHHHHHHhhhccHHH--HHHhHHHHHHHHHHHHHHHHH
Confidence 357888888899888744 334567777888888999999999999887643 223344445555666666677
Q ss_pred HHHHHHHHhCCCh
Q 006674 589 VMAAASIAVGLRG 601 (636)
Q Consensus 589 L~lll~~llgL~~ 601 (636)
.+++.+.+++++.
T Consensus 308 ~~~~~~~~~g~~~ 320 (601)
T PRK03659 308 VLYLLARLYGLRS 320 (601)
T ss_pred HHHHHHHHhCCCH
Confidence 7777777777654
No 29
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=59.84 E-value=1.1e+02 Score=33.55 Aligned_cols=132 Identities=12% Similarity=0.154 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHH---HHHHhHHHHHHHhhcCCcCcchHHH--HHHHHHHHHHHHHHH
Q 006674 12 TAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFV---AIFAVPLLSFHFISTNDPYAMNFRF--IAADTLQKIIMLFVL 86 (636)
Q Consensus 12 ~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV---~~VALPALLF~~ia~~dl~~l~~~~--ilay~l~~llvflll 86 (636)
.++.-+++=+.+|-+++++ + ++..+.+.+.+ -..++=+.++...+..--+.....+ +++..+--++.|.++
T Consensus 165 ~i~~~vllP~~LG~~~r~~---~-~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~g 240 (319)
T COG0385 165 SILLQVLLPFVLGQLLRPL---L-PKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLG 240 (319)
T ss_pred HHHHHHHHHHHHHHHHHHH---H-HHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556678888776 3 34444444443 3344444455555544222222222 222222233344444
Q ss_pred HHHHHhhcCCCcchhhHhhhhc-ccCcccccHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHH
Q 006674 87 GIWTNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYG-EYSGSLMVQVVVLQCIIWYTLLLF 150 (636)
Q Consensus 87 ~l~~r~~~~~~~~~~atv~aLa-sfsNtgfIGiPL~~aLfG-~~al~~lali~vv~~ivl~tlgl~ 150 (636)
+..+|+.+.+..| .....++ +.-| .=.|.|++..-++ +..+.+.+++.+.|++.--.++-.
T Consensus 241 y~~ar~~g~~~a~--~iti~ie~g~qn-~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~ 303 (319)
T COG0385 241 YFGARLLGFDKAD--EITIAIEGGMQN-LGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGL 303 (319)
T ss_pred HHHHHHhCCChhh--eeeEEEeecccc-HHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4445544422112 2223444 4444 4479999999557 678888888888888755444333
No 30
>COG2855 Predicted membrane protein [Function unknown]
Probab=57.61 E-value=51 Score=36.23 Aligned_cols=84 Identities=18% Similarity=0.261 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHH
Q 006674 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (636)
Q Consensus 512 P~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~l 591 (636)
++++|+++|+++... .+.|+-...-++.-++.-...+...+|..|...... .-+.. .....++-+...=++++
T Consensus 39 al~lAIllGi~l~~l-----~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~-~~G~~-~v~~~~~~l~~t~~~~~ 111 (334)
T COG2855 39 ALTLAILLGILLGIL-----PQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIA-DVGGS-GVLIIAITLSSTFLFAY 111 (334)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHH-HcCcc-HHHHHHHHHHHHHHHHH
Confidence 899999999999954 466777888889999999999999999999987522 22222 33334444444445666
Q ss_pred HHHHHhCCChh
Q 006674 592 AASIAVGLRGT 602 (636)
Q Consensus 592 ll~~llgL~~~ 602 (636)
.+..++|+|..
T Consensus 112 ~lg~~lgld~~ 122 (334)
T COG2855 112 FLGKLLGLDKK 122 (334)
T ss_pred HHHHHhCCCHH
Confidence 66678898864
No 31
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=56.69 E-value=2.3e+02 Score=29.11 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHH
Q 006674 500 ILIMVWRKLIRNPNTYSS-LIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFS 578 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAi-iLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i 578 (636)
....+.|+ ++-|.+.+. +.|+++.-..+ |+--+. +.++.++..+..+-||..|+.+.... .++..+.....
T Consensus 6 ~~~~l~~~-l~lP~~v~~il~GillGp~~l--g~i~~~---~~~~~l~~igl~~llF~~Gl~~d~~~--l~~~~~~~~~~ 77 (273)
T TIGR00932 6 LAVPLSRR-LGIPSVLGYLLAGVLIGPSGL--GLISNV---EGVNHLAEFGVILLMFLIGLELDLER--LWKLRKAAFGV 77 (273)
T ss_pred HHHHHHHH-hCCCHHHHHHHHHHHhCcccc--cCCCCh---HHHHHHHHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHH
Confidence 34556666 467766665 55777663300 321122 46888999999999999999888653 23445555555
Q ss_pred HHHHHHHHH-HHHHH-HHHHhCCChh
Q 006674 579 MAVRFLTGP-AVMAA-ASIAVGLRGT 602 (636)
Q Consensus 579 ~liKLIL~P-lL~ll-l~~llgL~~~ 602 (636)
.+.-.++ | .++.. +.++++.+..
T Consensus 78 ~~~~~~~-~~~~~~~~~~~~~~~~~~ 102 (273)
T TIGR00932 78 GVLQVLV-PGVLLGLLLGHLLGLALG 102 (273)
T ss_pred HHHHHHH-HHHHHHHHHHHHHCCCHH
Confidence 5555554 5 33333 3466776543
No 32
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=54.53 E-value=91 Score=33.82 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhhHhhhhcccCcccccHHHHHHHHhccc
Q 006674 77 LQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEY 128 (636)
Q Consensus 77 l~~llvflll~l~~r~~~~~~~~~~atv~aLasfsNtgfIGiPL~~aLfG~~ 128 (636)
+-.++.|+++++..|..+-+..+ ..-..+++--.+.-+|++++...||+.
T Consensus 254 l~~~~~~~lg~~~~r~~~l~~~~--~~a~~~e~g~qN~~lai~lA~~~f~~~ 303 (328)
T TIGR00832 254 IYFYIMFFLTFALAKKLGLPYSI--TAPAAFTGASNNFELAIAVAISLFGLN 303 (328)
T ss_pred HHHHHHHHHHHHHHHHhCcChhh--hhhheehhhhhhHHHHHHHHHHhCCCC
Confidence 33444455555555544322122 223344333455678999999999874
No 33
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=53.32 E-value=70 Score=35.39 Aligned_cols=77 Identities=9% Similarity=0.074 Sum_probs=51.6
Q ss_pred HHHHHHHHHhHHhhccccChh---hhhHHHHHHHHHHhHHHHH-HHhhcCCcCcc----hHHHHHHHHHHHHHHHHHHHH
Q 006674 17 LYVAMILAYGSVRWWKIFSPD---QCSGINRFVAIFAVPLLSF-HFISTNDPYAM----NFRFIAADTLQKIIMLFVLGI 88 (636)
Q Consensus 17 LFlLIaLGYla~R~~gifs~~---~~~~LnkFV~~VALPALLF-~~ia~~dl~~l----~~~~ilay~l~~llvflll~l 88 (636)
...+|.+|.++... |+++++ .++..++|+.+..++++++ -.++.+|++++ ++.++.......+.+.+..++
T Consensus 207 ~v~mII~~vi~k~~-gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAALKAF-GLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 45567888999998 999975 5566667777777777776 47888888766 355665555555544444445
Q ss_pred HHHhhc
Q 006674 89 WTNFTK 94 (636)
Q Consensus 89 ~~r~~~ 94 (636)
..|+.+
T Consensus 286 vGKllG 291 (347)
T TIGR00783 286 LGKLMG 291 (347)
T ss_pred HHHHhC
Confidence 555443
No 34
>COG3329 Predicted permease [General function prediction only]
Probab=51.78 E-value=1e+02 Score=33.83 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhcccc
Q 006674 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQ 564 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~ 564 (636)
..+.+++..|.||-+...+.|+++.++. |-+--+.+..+.+-+=+...-+=|+.+|+.-.++
T Consensus 206 ~~~ell~Esflnpal~lllggl~iGlit---Ge~g~~vl~~F~~~lFqGvL~lflL~MGm~A~rr 267 (372)
T COG3329 206 KIWELLQESFLNPALVLLLGGLAIGLIT---GEQGESVLKPFFDPLFQGVLCLFLLDMGMTAGRR 267 (372)
T ss_pred hhHHHHHHHHcCchHHHHHHHHHHhhee---ccCchhhhhhhhHHHHHHHHHHHHHHHhHHHHHH
Confidence 5688999999999999999999999884 3333345666667777777778888888876553
No 35
>PRK05326 potassium/proton antiporter; Reviewed
Probab=51.43 E-value=91 Score=36.04 Aligned_cols=95 Identities=15% Similarity=0.048 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhHHHHHH-HHHHHHHHHhhcCCCC-CcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHH
Q 006674 500 ILIMVWRKLIRNPNTYSS-LIGLVWSLIAFRWHVS-MPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATF 577 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAi-iLGLilsll~~~~gI~-LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~ 577 (636)
....+.+++ +-|.+++. ++|+++.-. ++. ++..-.+..+.++..+.++-||..|+.+.... .+..++.+..
T Consensus 20 ~~~~l~~r~-~~P~ll~~il~GillGp~----~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~--l~~~~~~~~~ 92 (562)
T PRK05326 20 LASRLSSRL-GIPSLLLFLAIGMLAGED----GLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS--FRPALGPALS 92 (562)
T ss_pred HHHHHHHHc-CCcHHHHHHHHHHHhCcc----ccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH--HHHHHHHHHH
Confidence 344555554 66766655 567766644 322 11111256788999999999999999887653 2334454544
Q ss_pred HHHHHHHHHHHHH--HHHHHHhCCChh
Q 006674 578 SMAVRFLTGPAVM--AAASIAVGLRGT 602 (636)
Q Consensus 578 i~liKLIL~PlL~--lll~~llgL~~~ 602 (636)
...+-.++ |.+. ++..++++++..
T Consensus 93 la~~gv~~-t~~~~g~~~~~l~g~~~~ 118 (562)
T PRK05326 93 LATLGVLI-TAGLTGLFAHWLLGLDWL 118 (562)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCHH
Confidence 44444443 3333 233466777643
No 36
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=48.28 E-value=1.3e+02 Score=33.18 Aligned_cols=53 Identities=9% Similarity=0.026 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccc
Q 006674 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQP 565 (636)
Q Consensus 510 kNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~ 565 (636)
-+++++|+++|+++.-+ +..+.|+....-++.-++...=++...+|..+...+
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~ 83 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPY 83 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHH
Confidence 56788999999998754 012467777788888888899999999999998875
No 37
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=47.86 E-value=2e+02 Score=34.02 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHH
Q 006674 511 NPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVM 590 (636)
Q Consensus 511 NP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~ 590 (636)
++.+=|.++|++++-. +.-..+++-++.+.+.-.|+=.+.+|+.+.... ....+..++..++..+++-++.+
T Consensus 241 s~~lGAFlAGl~l~~~------~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~--l~~~~~~il~~~~~~~~~K~~~~ 312 (621)
T PRK03562 241 SMALGAFLAGVLLASS------EYRHALESDIEPFKGLLLGLFFIAVGMSIDFGT--LLENPLRILILLLGFLAIKIAML 312 (621)
T ss_pred cHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777788777743 333567777777788888999999999887643 12233344445556677777777
Q ss_pred HHHHHHhCCCh
Q 006674 591 AAASIAVGLRG 601 (636)
Q Consensus 591 lll~~llgL~~ 601 (636)
++.+.+++++.
T Consensus 313 ~~~~~~~g~~~ 323 (621)
T PRK03562 313 WLLARPLGVPR 323 (621)
T ss_pred HHHHHHhCCCH
Confidence 77777777753
No 38
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=47.40 E-value=45 Score=34.06 Aligned_cols=62 Identities=10% Similarity=0.154 Sum_probs=35.0
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 532 I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|++..+.=..=-..+.++.++.+|..+.......... ..+++++++=++..|+...++.
T Consensus 28 lRfPD~YtRLHAATKa~TLGv~LILlgv~l~~~~~~~~~s-lklLLiIvFllLTaPVaSHaIA 89 (197)
T PRK12585 28 IRLPDVYTRTHAAGISNTFGVSLLLFATVGYFFHSGEGFN-ARVLLAVLFIFLTTPVASHLIN 89 (197)
T ss_pred HhcCcHHHHhhccccchhhhHHHHHHHHHHHHHhccchHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5889988775444444455667777776553321000111 2334445555777888777775
No 39
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=46.85 E-value=2e+02 Score=33.83 Aligned_cols=114 Identities=14% Similarity=0.082 Sum_probs=61.7
Q ss_pred HHHHHHHhhHHHHHHHH-HHHHHHHhhcCCCCC-cHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHH
Q 006674 503 MVWRKLIRNPNTYSSLI-GLVWSLIAFRWHVSM-PKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMA 580 (636)
Q Consensus 503 ~vlkkllkNP~IiAiiL-GLilsll~~~~gI~L-P~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~l 580 (636)
.+.++ ++-|.+++.++ |+++.-. ++.+ +. ...+..++..+..+-||.+|+-+.... . +...+.+.....
T Consensus 22 ~l~~r-l~~p~ilg~ilaGillGP~----~lg~i~~--~~~i~~laelGvv~LLF~iGLel~~~~-l-~~~~~~~~~~g~ 92 (601)
T PRK03659 22 PLAQR-LGIGAVLGYLLAGIAIGPW----GLGFISD--VDEILHFSELGVVFLMFIIGLELNPSK-L-WQLRRSIFGVGA 92 (601)
T ss_pred HHHHH-hCCChHHHHHHHHHHhccc----cccCCCc--HHHHHHHHHHHHHHHHHHHHhcCCHHH-H-HHHHHHHHHHHH
Confidence 34454 67788888755 5555422 2221 21 134668899999999999999888764 2 222333444444
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHH-HHHHHhhcchhhHHHHHHHH
Q 006674 581 VRFLTGPAVMAAASIAVGLRGTLLH-VAIVQAALPQGIVPFVFAKE 625 (636)
Q Consensus 581 iKLIL~PlL~lll~~llgL~~~~~~-VaVL~AAmP~Av~~~IfA~~ 625 (636)
.-+++--+++..+.+++|++....- +.+..+...+++..-++.++
T Consensus 93 ~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SSTaiv~~iL~e~ 138 (601)
T PRK03659 93 AQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSSTAMALQLMREK 138 (601)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444433344444556777643222 12223334455555555543
No 40
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=46.74 E-value=2.4e+02 Score=32.54 Aligned_cols=94 Identities=20% Similarity=0.235 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhhHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHH
Q 006674 500 ILIMVWRKLIRNPNTYSSLI-GLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFS 578 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAiiL-GLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i 578 (636)
.+..+.|+ ++.|.+++.++ |+++.-. -.|+ ++. ...++.++..+.-+-||.+|+-+.... . +...+.....
T Consensus 20 ~~~~l~~r-l~~P~ivg~IlaGillGp~--~lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~-l-~~~~~~~~~~ 91 (558)
T PRK10669 20 ILGMLANR-LRISPLVGYLLAGVLAGPF--TPGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKD-L-MAVKSIAIPG 91 (558)
T ss_pred HHHHHHHH-cCCCHHHHHHHHHHhhCcc--cccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHH-H-HHHhhHHHHH
Confidence 33455555 57888887654 4444322 0122 111 246788999999999999999988753 2 1222333333
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCh
Q 006674 579 MAVRFLTGPAVMAAASIAVGLRG 601 (636)
Q Consensus 579 ~liKLIL~PlL~lll~~llgL~~ 601 (636)
.+.-+++.-++.+++.++++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~ 114 (558)
T PRK10669 92 AIAQIAVATLLGMALSAVLGWSL 114 (558)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH
Confidence 44454444444444556677653
No 41
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=42.51 E-value=3e+02 Score=33.87 Aligned_cols=85 Identities=18% Similarity=0.297 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhhHHHHHHHH-HHHHHHHhhcCCCC-------CcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhcc
Q 006674 500 ILIMVWRKLIRNPNTYSSLI-GLVWSLIAFRWHVS-------MPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACG 571 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAiiL-GLilsll~~~~gI~-------LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~ 571 (636)
.+..++++ ++-|.+++-++ |+++.=..+ |.- +|.--...++.++....-+-||.+|+-+.... .++.
T Consensus 57 l~~~ll~r-l~~P~ivgeIlaGIlLGPs~l--g~i~~~~~~~fp~~~~~~l~~la~lGlillmFliGLE~Dl~~--lr~~ 131 (832)
T PLN03159 57 LLVFILKP-FRQPRVISEILGGVILGPSVL--GQSEVFANTIFPLRSVMVLETMANLGLLYFLFLVGVEMDISV--IRRT 131 (832)
T ss_pred HHHHHHHh-cCCChhHHHHHHHHhcCHhhh--CcChhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHcCcHHH--HHhc
Confidence 34445554 57888887654 555542211 221 23223357899999999999999999988653 2334
Q ss_pred chHHHHHHHHHHHHHHHHH
Q 006674 572 NSVATFSMAVRFLTGPAVM 590 (636)
Q Consensus 572 ~k~i~~i~liKLIL~PlL~ 590 (636)
.+..+.+.+.-+++ |+++
T Consensus 132 ~k~a~~ia~~~~il-pf~l 149 (832)
T PLN03159 132 GKKALAIAIAGMAL-PFCI 149 (832)
T ss_pred chHHHHHHHHHHHH-HHHH
Confidence 45455444444443 4433
No 42
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=36.48 E-value=5.9e+02 Score=28.33 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcCCcCcc---hHHHHHHHHHHHHHHHH
Q 006674 14 VVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAM---NFRFIAADTLQKIIMLF 84 (636)
Q Consensus 14 llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~dl~~l---~~~~ilay~l~~llvfl 84 (636)
..|-.++|-+|-..-...|+|+ .+.-...-|-+..+|++++-.+.+-|+.++ -.+++..|++..+..++
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vl 102 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVL 102 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHH
Confidence 4566666666655444449996 566666777788888888888888887765 46677777766665553
No 43
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=36.16 E-value=73 Score=33.54 Aligned_cols=115 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcCCC-CCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHH
Q 006674 507 KLIRNPNTYSSLIGLVWSLIAFRWHV-SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLT 585 (636)
Q Consensus 507 kllkNP~IiAiiLGLilsll~~~~gI-~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL 585 (636)
++..-|++||+++|+++... -+ ++..++.+--...+.....++++.++.-+... .......+.-.-.-|++
T Consensus 18 ~i~llPmlyA~iig~~~~~~----~~~~~~k~~~~~~~~~a~~~~~~~ll~l~ak~g~~----vGp~i~~i~~aGpALil 89 (241)
T PF11299_consen 18 KIVLLPMLYALIIGMALGPQ----KLKPLKKIISEKEMKFAGKLVGIALLPLIAKLGTT----VGPNIPKILSAGPALIL 89 (241)
T ss_pred eeehHHHHHHHHHHHHhcch----hhcccccccCHHHHHHHHHHHHHHHHHHHHHHHHH----hcccHHHHHHhhHHHHH
Q ss_pred H-------HHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCc
Q 006674 586 G-------PAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAI 632 (636)
Q Consensus 586 ~-------PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~ 632 (636)
+ .++.+-+..++|+..+......=.+==| +..+++++||.|..+
T Consensus 90 QE~GnlGTillaLPiAllLGlkREaIGat~SI~REp---~laiI~ekYGldSpE 140 (241)
T PF11299_consen 90 QEFGNLGTILLALPIALLLGLKREAIGATFSIGREP---NLAIISEKYGLDSPE 140 (241)
T ss_pred HHhcchhhHHHHhHHHHHhcccHHhhcceeecccCc---ceeeeehhcCCCCcc
No 44
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=32.65 E-value=2.4e+02 Score=30.28 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHH--HHHHHhHHHHHHHhhcCCcCcc---hHHH
Q 006674 6 DLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRF--VAIFAVPLLSFHFISTNDPYAM---NFRF 71 (636)
Q Consensus 6 dMl~Il~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkF--V~~VALPALLF~~ia~~dl~~l---~~~~ 71 (636)
+|.+.+...+-...=..++.+.-+ +.+.+..| +--+.+|.-+..+++.+++..| +|.+
T Consensus 234 ~~~~~~~~~l~~l~d~~~s~is~~--------~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~ 296 (322)
T COG0598 234 EMLEALRERLSSLLDAYLSLINNN--------QNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPY 296 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcc
Confidence 444444444444444444444444 33333333 5567788888999999988754 6666
No 45
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=31.86 E-value=81 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=19.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Q 006674 502 IMVWRKLIRNPNTYSSLIGLVWSLI 526 (636)
Q Consensus 502 ~~vlkkllkNP~IiAiiLGLilsll 526 (636)
+...-.++.-|+++++++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566778999999999999875
No 46
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=31.07 E-value=3.1e+02 Score=30.21 Aligned_cols=46 Identities=22% Similarity=0.209 Sum_probs=37.1
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHH
Q 006674 533 SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (636)
Q Consensus 533 ~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~ 579 (636)
.+|+.+.+.++.+++-..-+||.++|+.....+ .+..+.|......
T Consensus 269 ~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~-l~~~G~kp~~~g~ 314 (335)
T TIGR00698 269 LLPGEVVQALVPLDTFLLATAMAALGLTTNVSA-VKKAGVKPLFASY 314 (335)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHcCchHHHHHH
Confidence 478899999999999999999999999998875 4455666654443
No 47
>TIGR03109 exosortase_1 exosortase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this, the most common type so far, exosortase 1. We propose the gene symbol xrtA, analogous to srtA for the most common type of sortase in Gram-positive bacteria.
Probab=30.88 E-value=2.1e+02 Score=30.42 Aligned_cols=105 Identities=11% Similarity=0.067 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhh---ccchHHHHHHHHHHHHH
Q 006674 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIA---CGNSVATFSMAVRFLTG 586 (636)
Q Consensus 510 kNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~---~~~k~i~~i~liKLIL~ 586 (636)
-.+.......-+.+-++ -+|+|+.+...++.+..-.+-..|-..|.-......... ....-.-.++-+|.++.
T Consensus 110 G~~~~r~~~fPl~~Llf----~vP~p~~l~~pLq~~ta~~~~~~L~~~Gipv~~eG~~I~l~~g~~~Va~aCSGlr~l~~ 185 (267)
T TIGR03109 110 GPRVARALAFPLAFLLF----AVPVGDFLIPPLQDITAFFTVALLSATGIPVYREGVFIHIPSGTFEVAEACSGLRYLIA 185 (267)
T ss_pred HHHHHHHHHHHHHHHHH----HcCCHHHHhhHHHHHHHHHHHHHHHHcCCCEEEeeeEEEECCEEEEEeCCCCCHHHHHH
Confidence 33444444444444444 679999999999999999999999999988776542111 11222234567787764
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhhcchhhH
Q 006674 587 PAVMAAASIAVGLRGTLLHVAIVQAALPQGIV 618 (636)
Q Consensus 587 PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~ 618 (636)
=+....++..+-..+.+.+++++.+|.|.+..
T Consensus 186 ~~~l~~l~~~l~~~~~~~r~~l~~~ai~iai~ 217 (267)
T TIGR03109 186 SLAIGALYAYLNFRSIKRRLLFFLVSIIVPIL 217 (267)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 33333333333355666788888899988864
No 48
>PF03334 PhaG_MnhG_YufB: Na+/H+ antiporter subunit; InterPro: IPR005133 This is a family of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti (Sinorhizobium meliloti), show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons. ; GO: 0005451 monovalent cation:hydrogen antiporter activity, 0015672 monovalent inorganic cation transport, 0015992 proton transport
Probab=29.33 E-value=2.4e+02 Score=24.59 Aligned_cols=61 Identities=15% Similarity=0.199 Sum_probs=40.7
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHHH
Q 006674 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAASI 595 (636)
Q Consensus 532 I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~~ 595 (636)
+++|+...+.=..=-..+..+.++.+|..+.... .....+...+.++=++..|.....+..
T Consensus 17 lR~pd~y~RlHa~s~~~tlG~~lilig~~l~~~~---~~~~~k~lli~~~~~lt~Pv~sh~iar 77 (81)
T PF03334_consen 17 LRFPDFYTRLHAASKADTLGAILILIGLALYFGS---SWVSLKLLLIILFLLLTNPVASHAIAR 77 (81)
T ss_pred HhCCcHHHHhhhhhHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789988776555555666777888888887642 122334566667777778877776653
No 49
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=28.50 E-value=4.2e+02 Score=32.65 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=25.1
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHhhcCCcCcc
Q 006674 36 PDQCSGINRFVAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 36 ~~~~~~LnkFV~~VALPALLF~~ia~~dl~~l 67 (636)
.+..+.+..|+..+.+|.+....=.++|+..+
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l 344 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKI 344 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHh
Confidence 45567788888999999999887777777654
No 50
>PRK05326 potassium/proton antiporter; Reviewed
Probab=28.03 E-value=2.4e+02 Score=32.63 Aligned_cols=109 Identities=15% Similarity=0.094 Sum_probs=61.0
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHH
Q 006674 508 LIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGP 587 (636)
Q Consensus 508 llkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~P 587 (636)
+=.++.+-+.++|+++.-. ..+--..+.+..+.++....++-.+.+|+.+.... .....+..+....++-++.-|
T Consensus 242 lg~Sg~la~~iaGl~l~n~----~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~-l~~~~~~~l~i~~~l~~vaR~ 316 (562)
T PRK05326 242 LGGSGFLAVYLAGLVLGNR----PIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSR-LLDIALPALLLALFLILVARP 316 (562)
T ss_pred HCCcHHHHHHHHHHHHhCC----cccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3356777888888888643 22223467788888888888998899999876543 111111112222233444556
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHH
Q 006674 588 AVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFA 623 (636)
Q Consensus 588 lL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA 623 (636)
+.+++..+.++++. ....++-.+.|-|..+.++|
T Consensus 317 l~v~l~~~~~~~~~--~e~~~i~~~g~RG~v~i~lA 350 (562)
T PRK05326 317 LAVFLSLLPFRFNL--REKLFISWVGLRGAVPIVLA 350 (562)
T ss_pred HHHHHHHccCCCCH--hhhheeeeecchhHHHHHHH
Confidence 66666555555442 22233332345555554444
No 51
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=27.92 E-value=5.5e+02 Score=29.62 Aligned_cols=83 Identities=11% Similarity=0.005 Sum_probs=49.9
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHH
Q 006674 510 RNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAV 589 (636)
Q Consensus 510 kNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL 589 (636)
-++.+-|.++|++++-. +.-..+.+-...+.+...|+=-+.+|+.+.... . ...+..+...+++.++.-++.
T Consensus 248 ls~~lGAflaGl~l~~~------~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~-l-~~~~~~~~~~~~~~~v~K~~~ 319 (558)
T PRK10669 248 VSFALGAFFAGMVLNES------ELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMI-L-IQQPLAVLATLAIIVFGKSLA 319 (558)
T ss_pred ccHHHHHHHHHHHHhCC------hhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888887643 223334433444567788888888999887643 1 122223334445556666666
Q ss_pred HHHHHHHhCCC
Q 006674 590 MAAASIAVGLR 600 (636)
Q Consensus 590 ~lll~~llgL~ 600 (636)
+++.+.++|.+
T Consensus 320 ~~~~~~~~g~~ 330 (558)
T PRK10669 320 AFFLVRLFGHS 330 (558)
T ss_pred HHHHHHHhCCC
Confidence 66666666654
No 52
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=27.83 E-value=2.2e+02 Score=31.20 Aligned_cols=81 Identities=20% Similarity=0.262 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHH
Q 006674 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (636)
Q Consensus 512 P~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~l 591 (636)
..++++++|+++.-+ .-.+|+.+..-+.. .+|+.-|.+|..|.... ....++.-+....++=.+.. .+.+
T Consensus 168 ~lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~-I~~~G~~GIlL~v~vv~~t~-~~~~ 237 (312)
T PRK12460 168 AALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSM-LLQAGLAGILLGVLVTIVTG-FFNI 237 (312)
T ss_pred HHHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHH-HHHhChHHHHHHHHHHHHHH-HHHH
Confidence 367888888888755 33466766666665 88999999999998875 22344444433333322222 3344
Q ss_pred HHHHHhCCChh
Q 006674 592 AASIAVGLRGT 602 (636)
Q Consensus 592 ll~~llgL~~~ 602 (636)
.+..+++.++.
T Consensus 238 ~i~rllg~~~~ 248 (312)
T PRK12460 238 FADRLVGGTGI 248 (312)
T ss_pred HHHHHhCCChh
Confidence 44466676654
No 53
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=27.64 E-value=3.9e+02 Score=29.58 Aligned_cols=93 Identities=13% Similarity=0.048 Sum_probs=54.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCC-cHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHH
Q 006674 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSM-PKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSM 579 (636)
Q Consensus 501 l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~L-P~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~ 579 (636)
++++++..+.|+-++.++.|+++.+...+.+++- -.+..+.++ .-|++|.+-|.+.--+++ ..+|......
T Consensus 167 ~~~~l~E~l~~~sv~LLlGgliIG~~~g~~g~~~i~pf~~~lF~------G~L~lFLLeMGl~A~~rL--~~l~~~g~~l 238 (327)
T PF05982_consen 167 WGELLHESLTNKSVVLLLGGLIIGFLAGPEGVESIKPFFVDLFK------GVLCLFLLEMGLVAARRL--RDLRKVGWFL 238 (327)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHhheeCccchhhccchhhccHH------HHHHHHHHHhhHHHHHhh--HHHHhhhHHH
Confidence 5788999999999999999999998854444332 112233332 235666666655443322 2344443333
Q ss_pred HHHHHHHHHHHHH----HHHHhCCCh
Q 006674 580 AVRFLTGPAVMAA----ASIAVGLRG 601 (636)
Q Consensus 580 liKLIL~PlL~ll----l~~llgL~~ 601 (636)
+.==+++|++-.. +.+++|++.
T Consensus 239 i~Fgi~~Pli~a~ig~~lg~~~gls~ 264 (327)
T PF05982_consen 239 IAFGILMPLINALIGIGLGWLLGLSP 264 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3334455555444 346677764
No 54
>PRK12674 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.61 E-value=2.6e+02 Score=25.33 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 517 SLIGLVWSLIAFRWH-VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 517 iiLGLilsll~~~~g-I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|.++.+.+- +| +++|++..+.=..=-..+..+.++.+|..+.... .....+.+.+.++=++..|+....+.
T Consensus 11 l~~G~~f~~~ga-iGllR~pD~y~RlHa~tk~~tlG~~lil~g~~l~~~~---~~~~~k~ll~~~~~~lt~pv~sh~ia 85 (99)
T PRK12674 11 LLLGAFFALVGA-IGLVRLPDVYTRLHAATKATTLGLGLVLLASALYFAG---GGNSLKALLIILFLFLTAPVAAHLLA 85 (99)
T ss_pred HHHHHHHHHHHH-HHHHhCccHHHHhhhcchhhHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554410 02 5789988887655556677788888888876542 11223455566666777777777765
No 55
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=27.17 E-value=2.4e+02 Score=27.59 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHH
Q 006674 515 YSSLIGLVWSLIAFRWH-VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAA 593 (636)
Q Consensus 515 iAiiLGLilsll~~~~g-I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll 593 (636)
+-+++|.++.+.+. .| +++|++..+.=..=-..+.++.++.+|..+..... ........+.+.++=++..|+....+
T Consensus 14 ill~lG~~f~liga-IGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~~~~-~~~~~~k~lLii~fl~lTaPVaah~i 91 (145)
T PRK12586 14 IMILLGSIIALISA-IGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYFIVN-TGFFSVRLLLSLVFINLTSPVGMHLI 91 (145)
T ss_pred HHHHHHHHHHHHHH-HHHHhCCcHHHHccccccchhhHHHHHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555510 02 58999887765444456677788888887764321 01112345666777788888888887
Q ss_pred H
Q 006674 594 S 594 (636)
Q Consensus 594 ~ 594 (636)
.
T Consensus 92 a 92 (145)
T PRK12586 92 A 92 (145)
T ss_pred H
Confidence 5
No 56
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=26.99 E-value=7.6e+02 Score=29.25 Aligned_cols=39 Identities=3% Similarity=0.034 Sum_probs=27.5
Q ss_pred HHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHHHhhcC
Q 006674 23 LAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTN 62 (636)
Q Consensus 23 LGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~~ia~~ 62 (636)
+|+++.|+.+.. .+..+.+.+++++.++.+++|-.++..
T Consensus 374 ~~~~l~~~~~k~-~~~~~~~~~il~~~gi~sii~G~lyG~ 412 (646)
T PRK05771 374 IGLLLSFKLKKK-SEGLKRLLKILIYLGISTIIWGLLTGS 412 (646)
T ss_pred HHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555541123 346888999999999999999877653
No 57
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=26.50 E-value=2.1e+02 Score=26.16 Aligned_cols=74 Identities=15% Similarity=0.173 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhhcCC-CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 517 SLIGLVWSLIAFRWH-VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 517 iiLGLilsll~~~~g-I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|.++.+.+. +| +++|++..+.=..=-..+..+.++.+|..+.... ..... +.+.+.++=++..|.....+.
T Consensus 10 l~~G~~f~l~g~-iGllR~pD~y~RlHA~tk~~TlG~~lil~g~~l~~~~--~~~~~-k~lli~~f~~lT~Pvaah~ia 84 (99)
T PRK12670 10 LGLGIFLIVISV-IGVIRFPDFYTRLHAAGITDSLGAALILIGLAMQCGF--SVFTV-KVLLLICLLWITSTTASYALA 84 (99)
T ss_pred HHHHHHHHHHHH-HHHHhCccHHHHhhccccchhhhHHHHHHHHHHHhcc--hHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555410 02 5899988776554445566777888887665321 01111 233344444666777666664
No 58
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.36 E-value=1.2e+02 Score=32.55 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=18.7
Q ss_pred HHHHHHHhHHHHHHHhhcCCcCcc
Q 006674 44 RFVAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 44 kFV~~VALPALLF~~ia~~dl~~l 67 (636)
+++--+.+|.-+..+++.+++..|
T Consensus 268 tilt~IflPlT~IaGiyGMNf~~m 291 (324)
T PRK09546 268 SLMAMVFLPTTFLTGLFGVNLGGI 291 (324)
T ss_pred HHHHHHHHHHHHHHhhhccccCCC
Confidence 345567889999999999987655
No 59
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=25.90 E-value=4.1e+02 Score=31.15 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccch----hhhccchHHHHHHHHHHHHHHHHH
Q 006674 515 YSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPK----IIACGNSVATFSMAVRFLTGPAVM 590 (636)
Q Consensus 515 iAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~----l~~~~~k~i~~i~liKLIL~PlL~ 590 (636)
-.+++|+++..+ ++++|+.+.+ ..++||+-.+-+..-+. +++.+++..+. .++=.++.=+++
T Consensus 40 gvLfvgl~~G~~----g~~i~~~v~~---------~gl~lFvy~vG~~~Gp~Ff~~l~~~g~~~~~~-a~~~~~~~~~~~ 105 (562)
T TIGR03802 40 GSLIVAVLIGQL----GIQIDPGVKA---------VFFALFIFAIGYEVGPQFFASLKKDGLREIIL-ALVFAVSGLITV 105 (562)
T ss_pred HHHHHHHHHHhc----CCCCChHHHH---------HHHHHHHHHhhhccCHHHHHHHHhccHHHHHH-HHHHHHHHHHHH
Confidence 345566666666 8888886543 56677665555544331 22334444333 344445555677
Q ss_pred HHHHHHhCCChh
Q 006674 591 AAASIAVGLRGT 602 (636)
Q Consensus 591 lll~~llgL~~~ 602 (636)
+++.++++++..
T Consensus 106 ~~~~~~~g~~~~ 117 (562)
T TIGR03802 106 YALAKIFGLDKG 117 (562)
T ss_pred HHHHHHhCCCHH
Confidence 777788898754
No 60
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=25.18 E-value=3.8e+02 Score=33.09 Aligned_cols=109 Identities=10% Similarity=-0.052 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHHHHhhcCCC-CCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchh----hhccchHHHHHHHHHHHH
Q 006674 511 NPNTYSSLIGLVWSLIAFRWHV-SMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKI----IACGNSVATFSMAVRFLT 585 (636)
Q Consensus 511 NP~IiAiiLGLilsll~~~~gI-~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l----~~~~~k~i~~i~liKLIL 585 (636)
+-++-+.++|+++... +. .--.-...+.+.+......+..+.+|+.+...... ....|..+++.+++=++.
T Consensus 265 SGfLAVFVAGl~~gn~----~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVr 340 (810)
T TIGR00844 265 DDLLVSFFAGTAFAWD----GWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLR 340 (810)
T ss_pred ccHHHHHHHHHHHhcc----cchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 4566666777777643 21 00001222444455555667888999988643210 012245555566666677
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHH
Q 006674 586 GPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFA 623 (636)
Q Consensus 586 ~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA 623 (636)
-|.+++++..+.+-...+...+++-..=|-|+.+..|+
T Consensus 341 RPpaVlll~~li~~~~s~rErlFigWFGpRGIGSIyyl 378 (810)
T TIGR00844 341 RIPAVLILKPLIPDIKSWREAMFIGHFGPIGVGAVFAA 378 (810)
T ss_pred HHHHHHHHhhhcccCCCHHHHHHheeeccccHHHHHHH
Confidence 77777765545544445677777777778877666554
No 61
>PRK12587 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=25.10 E-value=4.3e+02 Score=24.96 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 517 SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 517 iiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|.++.+.+.-==+++|++..+.=..=-..+.++.++.+|..+...... .......+.+.++=++-.|+....+.
T Consensus 14 l~~G~~~~ligaiGllR~PD~y~RlHAatk~~TlG~~lil~g~~l~~~~~~-~~~~~k~ll~~~f~~lT~Pvaah~ia 90 (118)
T PRK12587 14 VIIGALISALAAIGLLRLEDVYSRAHAAGKASTLGAMSLLFGTFLYFIATQ-GYVNMQLIVGIIFVLITGPLSSHMIM 90 (118)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhHhhHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544410002689998887665555667788888899887643210 01112345556666777777777775
No 62
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=24.98 E-value=5e+02 Score=28.92 Aligned_cols=117 Identities=16% Similarity=0.197 Sum_probs=68.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHH
Q 006674 502 IMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAV 581 (636)
Q Consensus 502 ~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~li 581 (636)
....++ ++-|.+++.+++-+.-- ++++-.+..-.+.++.++.-..-+=||.+|+-....+ . ++..+.+......
T Consensus 22 ~~l~~r-l~lp~vlg~llaGiilG---p~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~-l-~~~~~~~~~~~~~ 95 (397)
T COG0475 22 GPLFKR-LGLPPVLGYLLAGIILG---PWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLER-L-KKVGRSVGLGVAQ 95 (397)
T ss_pred HHHHHH-cCCchHHHHHHHHHhcC---cccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHH-H-HHhchhhhhhHHH
Confidence 344444 67888888776544331 1244455556788899999999999999999888764 2 2333332555555
Q ss_pred HHHHHHHHHHHHH-H-HhCCChhHHHH-HHHHhhcchhhHHHHHHH
Q 006674 582 RFLTGPAVMAAAS-I-AVGLRGTLLHV-AIVQAALPQGIVPFVFAK 624 (636)
Q Consensus 582 KLIL~PlL~lll~-~-llgL~~~~~~V-aVL~AAmP~Av~~~IfA~ 624 (636)
-.+..|.+....+ . .+|++....-. ...++..=+++..-++.+
T Consensus 96 ~~~~~~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~~i~~~iL~e 141 (397)
T COG0475 96 VGLTAPFLLGLLLLLGILGLSLIAALFLGAALALSSTAIVLKILME 141 (397)
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666664444333 2 36776654332 233333334444444444
No 63
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=24.51 E-value=7.4e+02 Score=26.82 Aligned_cols=112 Identities=15% Similarity=0.110 Sum_probs=58.0
Q ss_pred hHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhh-hccchHHHHHHHHHHHHHHH
Q 006674 511 NPNTYSSLI-GLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKII-ACGNSVATFSMAVRFLTGPA 588 (636)
Q Consensus 511 NP~IiAiiL-GLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~-~~~~k~i~~i~liKLIL~Pl 588 (636)
+|.+++.++ +.+++.+ ......+|.++....+.+-++ .+|..+....... .+........++.=+++.=+
T Consensus 178 a~~llGpml~~a~~~~~-~~~~~~~P~~l~~~aqv~iG~-------~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~ 249 (318)
T PF05145_consen 178 APWLLGPMLVSAILNLF-GGPSFSLPPWLVNAAQVLIGA-------SIGSRFTRETLRELRRLLPPALLSTLLLLALCAL 249 (318)
T ss_pred cHHHHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHH-------HHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444 3444444 112467888776655544333 3455555443111 11112222333333344444
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhhcchhhHHH-HHHHHhCCCCCccc
Q 006674 589 VMAAASIAVGLRGTLLHVAIVQAALPQGIVPF-VFAKEYNVHPAILS 634 (636)
Q Consensus 589 L~lll~~llgL~~~~~~VaVL~AAmP~Av~~~-IfA~~YG~d~e~AS 634 (636)
+.+++.++.++|.. ..+++..|=|.... ++|...|.|...++
T Consensus 250 ~a~~l~~~~~~~~~----t~~La~aPGGl~eM~l~A~~l~~d~~~V~ 292 (318)
T PF05145_consen 250 FAWLLSRLTGIDFL----TALLATAPGGLAEMALIALALGADVAFVA 292 (318)
T ss_pred HHHHHHHHHCCCHH----HHHHHhCCccHHHHHHHHHHcCCChHHHH
Confidence 44555566777743 56677888887754 56888888876543
No 64
>PF06942 GlpM: GlpM protein; InterPro: IPR009707 This family consists of several bacterial GlpM membrane proteins. GlpM is a hydrophobic protein containing 109 amino acids. It is thought that GlpM may play a role in alginate biosynthesis in Pseudomonas aeruginosa [].
Probab=24.40 E-value=5e+02 Score=24.36 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHHH
Q 006674 11 LTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFH 57 (636)
Q Consensus 11 l~~llPLFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF~ 57 (636)
+-.++|.|.+|+-=.....+ +.|+.+.-.-|=++=..|-++|-
T Consensus 27 LvPLFPTFALIahyiVg~er----~~~~lr~T~lFgi~siipy~~yL 69 (107)
T PF06942_consen 27 LVPLFPTFALIAHYIVGSER----GMEALRTTALFGIWSIIPYAAYL 69 (107)
T ss_pred HHHHhHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHHhHHHHHHH
Confidence 44678888888875555554 77888888889888888888875
No 65
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=24.26 E-value=3.4e+02 Score=29.15 Aligned_cols=95 Identities=14% Similarity=0.001 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHH
Q 006674 512 PNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMA 591 (636)
Q Consensus 512 P~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~l 591 (636)
|+++-+++|.++.-. ++=-++.....-++.-+.+.|+-+|.-=..-.... ....+..+....++=.++.-++.+
T Consensus 8 ~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 8 PIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLE--DLLSLWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchh--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 788888888877765 76667778888888888999998887433311111 112222233333333333334444
Q ss_pred HHHHHhCCChhHHHHHHHHhh
Q 006674 592 AASIAVGLRGTLLHVAIVQAA 612 (636)
Q Consensus 592 ll~~llgL~~~~~~VaVL~AA 612 (636)
++..++..+..+..+.++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~ 102 (385)
T PF03547_consen 82 LLSRLFRLPKEWRGVFVLAAS 102 (385)
T ss_pred HHHHhcCCCcccceEEEeccc
Confidence 444556666666555555443
No 66
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=24.08 E-value=4.9e+02 Score=28.83 Aligned_cols=25 Identities=4% Similarity=-0.002 Sum_probs=19.0
Q ss_pred HHHHHHHHhHHHHHHHhhcCCcCcc
Q 006674 43 NRFVAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 43 nkFV~~VALPALLF~~ia~~dl~~l 67 (636)
.+.+-.+++=.++..++++.++.++
T Consensus 277 i~~I~~~sL~~fl~~almsl~l~~l 301 (368)
T PF03616_consen 277 IDRISGISLDLFLAMALMSLKLWVL 301 (368)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHH
Confidence 3446677777788888988888877
No 67
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=23.68 E-value=4.8e+02 Score=29.76 Aligned_cols=77 Identities=9% Similarity=0.026 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhHHhhccccCh---hhhhHHHHHHHHHHhHHHHHH-HhhcCCcCcc----hHHHHHHHHHHHHHHHHHHH
Q 006674 16 PLYVAMILAYGSVRWWKIFSP---DQCSGINRFVAIFAVPLLSFH-FISTNDPYAM----NFRFIAADTLQKIIMLFVLG 87 (636)
Q Consensus 16 PLFlLIaLGYla~R~~gifs~---~~~~~LnkFV~~VALPALLF~-~ia~~dl~~l----~~~~ilay~l~~llvflll~ 87 (636)
|-|+++.+=....|..+++++ +.++...+|+.+--+|++++- .++-+|++++ ++.+++......+.+.+..+
T Consensus 272 h~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~ 351 (414)
T PF03390_consen 272 HAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAF 351 (414)
T ss_pred cHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 334444443444444488885 577888999999888888885 6777888866 45555544443333333334
Q ss_pred HHHHh
Q 006674 88 IWTNF 92 (636)
Q Consensus 88 l~~r~ 92 (636)
+..++
T Consensus 352 ~vG~l 356 (414)
T PF03390_consen 352 LVGKL 356 (414)
T ss_pred HHHHH
Confidence 44443
No 68
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional
Probab=23.22 E-value=1.1e+03 Score=26.72 Aligned_cols=115 Identities=15% Similarity=0.154 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHH------HHHHHHhhhccccchhhhccch
Q 006674 500 ILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLG------MAMFSLGLFMALQPKIIACGNS 573 (636)
Q Consensus 500 ~l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatP------LALf~IGlsLa~~~~l~~~~~k 573 (636)
.+++.+++-.+.=-.+..+++....+.+.--.-.+|+.+.+.+.-++..-.. +.++.+|+.|..
T Consensus 263 ~l~~~l~~t~~~t~~i~~ii~~a~~f~~~lt~~gvp~~i~~~i~~~~~~~~~~Ll~i~~~~lvlGmfld~---------- 332 (425)
T PRK15060 263 TLYHVLINAAKTTSVVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAIMVVGMVMDL---------- 332 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhH----------
Confidence 4444444444444334333333322221000457898888888777642222 223334443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHh------hcchhhHHHHHHHHhCCCC
Q 006674 574 VATFSMAVRFLTGPAVMAAASIAVGLRGTLLHVAIVQA------ALPQGIVPFVFAKEYNVHP 630 (636)
Q Consensus 574 ~i~~i~liKLIL~PlL~lll~~llgL~~~~~~VaVL~A------AmP~Av~~~IfA~~YG~d~ 630 (636)
...=+++.|++ +-+..-+|+|+.+..++++.. .=|.|.+.|+.+.--|.+.
T Consensus 333 -----~a~ili~~Pil-~Pi~~~~Gidpv~fgii~~~~~~ig~iTPPvG~~lfv~~~ia~~~~ 389 (425)
T PRK15060 333 -----TPTVLILTPVL-MPLVKEAGIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKF 389 (425)
T ss_pred -----HHHHHHHHHHH-HHHHHHcCCChHHHHHHHHHHHHHhCCCCCccHHHHHHHHhcCCCH
Confidence 11223344543 223345799999877766554 3488888888887766543
No 69
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.15 E-value=3.7e+02 Score=24.82 Aligned_cols=76 Identities=13% Similarity=0.019 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 517 SLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 517 iiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|.++.+.+.-==+++|++..+.=.-=-..+..+.++.+|..+..... .......+.+.++=++..|.....+.
T Consensus 7 ll~G~~f~l~g~iGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~~~--~~~~~k~lli~~f~~lt~Pvaah~ia 82 (104)
T PRK12675 7 LLFGYSIMFFGALGLLRFPDVYTRLHAATKCDTGGAMGIILALALASDAS--LLIKLKFLVLAFLIAMINPMVSHAIA 82 (104)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhhhhHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555551000168999888876666666778888888887764310 01112344445555566677766664
No 70
>PRK04972 putative transporter; Provisional
Probab=22.80 E-value=6.6e+02 Score=29.46 Aligned_cols=142 Identities=11% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhHHhhccccChhhhhH----------------HHHHHHHHHhHHHHHHHhhcCCcCc
Q 006674 5 KDLYLVL--TAVVPLYVAMILAYGSVRWWKIFSPDQCSG----------------INRFVAIFAVPLLSFHFISTNDPYA 66 (636)
Q Consensus 5 ~dMl~Il--~~llPLFlLIaLGYla~R~~gifs~~~~~~----------------LnkFV~~VALPALLF~~ia~~dl~~ 66 (636)
+.+.+++ +.++.+|+.+++||+++|. ++-+-.--.. +...+..+.+=.++|.-=.+.-+.-
T Consensus 3 ~~~~~~l~~~~~~~lf~~i~lG~~lG~i-~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~~~Gp~F 81 (558)
T PRK04972 3 INVADLLNGNYILLLFVVLALGLCLGKL-RLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNF 81 (558)
T ss_pred ccHHHHhccCChHHHHHHHHHHHhhhce-EEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred ch------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhhHhhhhc-ccCcccccHHHHHHHHhcc------------
Q 006674 67 MN------FRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLS-TLPNTLVMGIPLLIAMYGE------------ 127 (636)
Q Consensus 67 l~------~~~ilay~l~~llvflll~l~~r~~~~~~~~~~atv~aLa-sfsNtgfIGiPL~~aLfG~------------ 127 (636)
+. +.+.+.-.+.+++..++.+.+.++.+ .++..+.-.+| +..||.-+|...=..-=+.
T Consensus 82 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~G~~aGa~T~tp~l~~a~~~~~~~~~~~~~~~~~~~~ 158 (558)
T PRK04972 82 FSIFFRDGKNYLMLALVMVGSALVIALGLGKLFG---WDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGAESRQLSLALDN 158 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHhhccccCcHHHHHHHHHHhccCccccchhcccCc
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 006674 128 YSGSLMVQVVVLQCIIWYTLLLF 150 (636)
Q Consensus 128 ~al~~lali~vv~~ivl~tlgl~ 150 (636)
.++.|.+.+.+..-.+++..-++
T Consensus 159 ~~vgYa~~y~~g~i~~i~~~~~~ 181 (558)
T PRK04972 159 LSLGYALTYLIGLVSLIVGARYL 181 (558)
T ss_pred cchhHHhHHHHHHHHHHHHHHHH
No 71
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.47 E-value=75 Score=29.74 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 006674 69 FRFIAADTLQKIIML 83 (636)
Q Consensus 69 ~~~ilay~l~~llvf 83 (636)
|.+++.+++..++++
T Consensus 2 W~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 2 WVLFAIIIVAILLFL 16 (130)
T ss_pred eeeHHHHHHHHHHHH
Confidence 445555444444444
No 72
>TIGR01300 CPA3_mnhG_phaG monovalent cation/proton antiporter, MnhG/PhaG subunit. This model represents a subfamily of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti, show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons.
Probab=22.40 E-value=3.5e+02 Score=24.53 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=38.4
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 532 I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|++..+.=.-=-..+..+.++.+|..+...-. ........+.+.++=++-.|.....+.
T Consensus 18 lR~pD~y~RlHAatk~~tlG~~lil~g~~l~~~~~-~~~~~~~~lli~~f~~lT~Pvaah~ia 79 (97)
T TIGR01300 18 VRFPDVYTRLHAATKGTTLGTILILLGVALIALVL-DLAVSIKLLLIALFILLTNPVGAHLLA 79 (97)
T ss_pred HhCCcHHHHhhhhhhhHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899887765555556667788888887764300 011122345556666777777777665
No 73
>PRK03818 putative transporter; Validated
Probab=21.72 E-value=5.7e+02 Score=29.93 Aligned_cols=82 Identities=13% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccch----hhhccchHHHHHHHHHHHHHHHHH
Q 006674 515 YSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPK----IIACGNSVATFSMAVRFLTGPAVM 590 (636)
Q Consensus 515 iAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~----l~~~~~k~i~~i~liKLIL~PlL~ 590 (636)
-.++.|+++..+..++++++|.....+++. ..++||+-.+-+.--+. .+..+++.... .++=.++..+++
T Consensus 35 g~L~~gl~~G~~~~~~~~~~~~~~~~~~~~-----~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~-~~~~~~~~~~~~ 108 (552)
T PRK03818 35 GVLFGGIIVGHFVSQFGLTLDSDMLHFIQE-----FGLILFVYTIGIQVGPGFFSSLRKSGLRLNLF-AVLIVILGGLVT 108 (552)
T ss_pred HHHHHHHHHhccccccCcccChHHHHHHHH-----HHHHHHHHHHhhcccHHHHHHHHHhhHHHHHH-HHHHHHHHHHHH
Confidence 344555555551111278888877776664 34666665555543331 12223333332 233333334455
Q ss_pred HHHHHHhCCChh
Q 006674 591 AAASIAVGLRGT 602 (636)
Q Consensus 591 lll~~llgL~~~ 602 (636)
+++.++++++..
T Consensus 109 ~~~~~~~~~~~~ 120 (552)
T PRK03818 109 AILHKLFGIPLP 120 (552)
T ss_pred HHHHHHhCCCHH
Confidence 555678888754
No 74
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=20.88 E-value=89 Score=31.83 Aligned_cols=22 Identities=23% Similarity=0.089 Sum_probs=15.1
Q ss_pred HHHHHhHHHHHHHhhcCCcCcc
Q 006674 46 VAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 46 V~~VALPALLF~~ia~~dl~~l 67 (636)
+--+.+|+-++.++..+++..+
T Consensus 240 ~t~iflPlt~i~g~fGMN~~~~ 261 (292)
T PF01544_consen 240 VTAIFLPLTFITGIFGMNFKGM 261 (292)
T ss_dssp HHHHHHHHHHHTTSTTS-SS--
T ss_pred HHHHHHHHHHHHHHhhCCccCC
Confidence 3344499999999999988755
No 75
>PRK12671 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=20.26 E-value=4.2e+02 Score=25.23 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchhhhccchHHHHHHHHHHHHHHHHHHHHH
Q 006674 532 VSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKIIACGNSVATFSMAVRFLTGPAVMAAAS 594 (636)
Q Consensus 532 I~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l~~~~~k~i~~i~liKLIL~PlL~lll~ 594 (636)
+++|++..+.=.-=-..+.++.++.+|..+...... .......+.+.++=++-.|.....+.
T Consensus 34 lR~PD~ytRlHAatKa~TlG~~liL~g~~l~~~~~~-~~~~~k~lli~~Fl~lTaPvaaH~ia 95 (120)
T PRK12671 34 VRLKSFYERLHAPTLGTSWGAGGILIASILYFSVLQ-SRPVLHEVLIGVFVVVTTPVTLMLLS 95 (120)
T ss_pred hcCCcHHHHhhcchhhhhhhHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689998887665555667778888888877543210 01122355566666777777777765
Done!