Query 006674
Match_columns 636
No_of_seqs 387 out of 1726
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 05:56:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 98.4 1.2E-06 4E-11 92.0 11.1 125 501-634 9-134 (332)
2 3zux_A Transporter, ASBTNM; tr 94.6 0.34 1.2E-05 50.6 13.3 120 17-144 175-303 (332)
3 2zy9_A Mg2+ transporter MGTE; 41.4 3.6E+02 0.012 28.9 14.5 85 550-635 356-447 (473)
4 4ev6_A Magnesium transport pro 14.9 1.9E+02 0.0063 29.6 5.5 22 46-67 285-306 (339)
5 3rhw_A Avermectin-sensitive gl 13.5 4.5E+02 0.015 26.7 8.0 27 8-38 215-241 (347)
6 2iub_A CORA, divalent cation t 12.3 1.3E+02 0.0046 31.1 3.6 22 46-67 309-330 (363)
7 3if4_A Integron cassette prote 7.8 1.3E+02 0.0045 26.8 1.2 18 189-206 25-42 (119)
8 1q5l_A Chaperone protein DNAK; 6.0 4.3E+02 0.015 23.5 3.7 39 171-209 81-119 (135)
9 2op6_A Heat shock 70 kDa prote 5.4 4.8E+02 0.016 23.4 3.7 38 171-208 64-101 (152)
10 2lat_A Dolichyl-diphosphooligo 5.2 7.1E+02 0.024 18.1 3.7 25 1-25 1-25 (37)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=98.38 E-value=1.2e-06 Score=92.05 Aligned_cols=125 Identities=17% Similarity=0.111 Sum_probs=99.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHhHHHHHHHHHhhhccccchh-hhccchHHHHHH
Q 006674 501 LIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGLFMALQPKI-IACGNSVATFSM 579 (636)
Q Consensus 501 l~~vlkkllkNP~IiAiiLGLilsll~~~~gI~LP~~L~~~L~~Lg~AatPLALf~IGlsLa~~~~l-~~~~~k~i~~i~ 579 (636)
++++.+ .+.++..+.+++++++.++ .|+.. ..++..-..+.++.||.+|+.+...+.. ..++++......
T Consensus 9 l~~~~~-~l~~~~~l~i~~~~~lg~~-------~P~~~-~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l 79 (332)
T 3zux_A 9 LSKISS-FIGKTFSLWAALFAAAAFF-------APDTF-KWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGV 79 (332)
T ss_dssp HHHHHH-HHHHTHHHHHHHHHHHHHH-------CGGGT-GGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH-------cchhh-hhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHH
Confidence 444443 5678889999999988887 34322 1233444568889999999999987632 124566777889
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhcchhhHHHHHHHHhCCCCCccc
Q 006674 580 AVRFLTGPAVMAAASIAVGLRGTLLHVAIVQAALPQGIVPFVFAKEYNVHPAILS 634 (636)
Q Consensus 580 liKLIL~PlL~lll~~llgL~~~~~~VaVL~AAmP~Av~~~IfA~~YG~d~e~AS 634 (636)
+.+++++|++++++.+++++++.....+++.+++|+++.+.+++..+|.|.+.+.
T Consensus 80 ~~~~vi~Pll~~~l~~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~~la~ 134 (332)
T 3zux_A 80 IAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSV 134 (332)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999987654
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=94.62 E-value=0.34 Score=50.61 Aligned_cols=120 Identities=9% Similarity=0.033 Sum_probs=62.5
Q ss_pred HHHHHHHHHhHHhhccccChhhhhHHHHHHHHHHhHHHHH---HHhhcCCcCcc---hHHHHHHHHHHHHHHHHHHHHHH
Q 006674 17 LYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSF---HFISTNDPYAM---NFRFIAADTLQKIIMLFVLGIWT 90 (636)
Q Consensus 17 LFlLIaLGYla~R~~gifs~~~~~~LnkFV~~VALPALLF---~~ia~~dl~~l---~~~~ilay~l~~llvflll~l~~ 90 (636)
+++=+++|.+++++++-. .+.+.+.+-.++.-++++ ..++.. .+.+ .+..+++..+..++.|++++...
T Consensus 175 vllP~~lG~l~r~~~~~~----~~~~~~~l~~~s~~~illiv~~~~~~~-~~~~~~~~~~v~~~~~l~~~~~~~lg~~~~ 249 (332)
T 3zux_A 175 VLLPIVLGLIVHKVLGSK----TEKLTDALPLVSVAAIVLIIGAVVGAS-KGKIMESGLLIFAVVVLHNGIGYLLGFFAA 249 (332)
T ss_dssp THHHHHHHHHHHHHHGGG----GHHHHTTHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHhHHHHHhh-hHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567888888762222 233444333344333333 223322 2222 23333333444445555555555
Q ss_pred HhhcCCCcchhhHhhhh-cccCcccccHHHHHHHHhc--cchhhHHHHHHHHHHHHH
Q 006674 91 NFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYG--EYSGSLMVQVVVLQCIIW 144 (636)
Q Consensus 91 r~~~~~~~~~~atv~aL-asfsNtgfIGiPL~~aLfG--~~al~~lali~vv~~ivl 144 (636)
|..+....+ ....++ ++.-|+ -+|++++...|| +....+.+++.+.|++.-
T Consensus 250 r~~~~~~~~--~~ti~~e~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 250 KWTGLPYDA--QKALTIEVGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHTTCCHHH--HHHHHHHHHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred HHhCCCHhH--hhhhhhhhhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 543322112 333455 456777 599999999994 456667777777776654
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=41.36 E-value=3.6e+02 Score=28.90 Aligned_cols=85 Identities=12% Similarity=-0.057 Sum_probs=51.0
Q ss_pred HHHHHHHHhhhccccchh--hhccchHHHHHHHHHHHHHHHHHHHHHHHhCCChh-----HHHHHHHHhhcchhhHHHHH
Q 006674 550 LGMAMFSLGLFMALQPKI--IACGNSVATFSMAVRFLTGPAVMAAASIAVGLRGT-----LLHVAIVQAALPQGIVPFVF 622 (636)
Q Consensus 550 tPLALf~IGlsLa~~~~l--~~~~~k~i~~i~liKLIL~PlL~lll~~llgL~~~-----~~~VaVL~AAmP~Av~~~If 622 (636)
--.++++=|+.+...... .+.-+|++...++.=+++..++....+++++ ... ...++++..|.=.|+..+++
T Consensus 356 q~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~v~~a~~~~~~~a~~~g~~~p~~ 434 (473)
T 2zy9_A 356 QSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH-PLLLPVVGVSLVLIVFFANLVGAMLPFL 434 (473)
T ss_dssp HHHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555543311 1123456666677777777666665555555 211 12233445566778888999
Q ss_pred HHHhCCCCCcccc
Q 006674 623 AKEYNVHPAILST 635 (636)
Q Consensus 623 A~~YG~d~e~ASt 635 (636)
..++|.||..+|.
T Consensus 435 ~~~~~~DPa~~s~ 447 (473)
T 2zy9_A 435 LRRLGVDPALVSN 447 (473)
T ss_dssp HHHHTCCGGGSCH
T ss_pred HHHcCCCcccccc
Confidence 9999999998873
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=14.88 E-value=1.9e+02 Score=29.62 Aligned_cols=22 Identities=9% Similarity=-0.164 Sum_probs=17.1
Q ss_pred HHHHHhHHHHHHHhhcCCcCcc
Q 006674 46 VAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 46 V~~VALPALLF~~ia~~dl~~l 67 (636)
+--+.+|.-++.+++.+++..+
T Consensus 285 it~IflP~T~IaGiyGMNf~~m 306 (339)
T 4ev6_A 285 VTTIFAVPMWITGIYGMNFSYL 306 (339)
T ss_dssp HHHHSSHHHHHHHHTTCCCSCC
T ss_pred HHHHHHHHHHHHhhccCcCCCC
Confidence 3346689999999999988754
No 5
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=13.49 E-value=4.5e+02 Score=26.72 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhccccChhh
Q 006674 8 YLVLTAVVPLYVAMILAYGSVRWWKIFSPDQ 38 (636)
Q Consensus 8 l~Il~~llPLFlLIaLGYla~R~~gifs~~~ 38 (636)
+-+++.++|.++++++-++.-.. +++.
T Consensus 215 ~y~~~l~iP~~li~~ls~~sF~l----p~~~ 241 (347)
T 3rhw_A 215 FYLLQLYIPSCMLVIVSWVSFWF----DRTA 241 (347)
T ss_dssp HHHHHTHHHHHHHHHHHHTTTTS----CTTC
T ss_pred EEEEEeehhHHHHHHHhheEEec----cCCC
Confidence 45788999999999999888775 6654
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=12.29 E-value=1.3e+02 Score=31.06 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHhhcCCcCcc
Q 006674 46 VAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 46 V~~VALPALLF~~ia~~dl~~l 67 (636)
+--+.+|.-++.+++.+++..+
T Consensus 309 it~IflP~T~IaGiyGMNf~~m 330 (363)
T 2iub_A 309 IATIFMPLTFIAGIYGMNFEYM 330 (363)
T ss_dssp HHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHhhhcccCCCC
Confidence 4456688888889999887645
No 7
>3if4_A Integron cassette protein HFX_CASS5; integron cassette protein mobIle metagenome structural genomics PSI-2 protein structure initiative midwest center for structural genomics; HET: MSE; 2.18A {Unidentified}
Probab=7.75 E-value=1.3e+02 Score=26.78 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=14.9
Q ss_pred ccccccccCCCCceEEEE
Q 006674 189 FLETDAEIGDDGKLHVTV 206 (636)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~ 206 (636)
.+.+..|++++|+|||+-
T Consensus 25 e~ia~IEvd~~Grihv~p 42 (119)
T 3if4_A 25 EFVAAIEIDGTGRIHVTP 42 (119)
T ss_dssp EEEEEEEECTTSCEEEEE
T ss_pred HHHHHeeeccCCcEEEee
Confidence 355668999999999996
No 8
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1
Probab=5.95 E-value=4.3e+02 Score=23.53 Aligned_cols=39 Identities=28% Similarity=0.403 Sum_probs=26.2
Q ss_pred cceeeeecCcccccCCccccccccccCCCCceEEEEeec
Q 006674 171 SIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKS 209 (636)
Q Consensus 171 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (636)
.+.+|.++.---.-.|...++..-+++.||-|+|..+-.
T Consensus 81 ~Lg~f~l~gipp~p~G~~~IeVtf~iD~nGiL~V~a~d~ 119 (135)
T 1q5l_A 81 SLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDK 119 (135)
T ss_dssp EEEEEECCCCCSCCSSSCCEEEEEEECTTSEEEEEEEET
T ss_pred EEEEEEEeCCCCCCCceeEEEEEEEECCCCEEEEEEEEC
Confidence 456666653211223555688889999999999998643
No 9
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans}
Probab=5.41 E-value=4.8e+02 Score=23.36 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=25.8
Q ss_pred cceeeeecCcccccCCccccccccccCCCCceEEEEee
Q 006674 171 SIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRK 208 (636)
Q Consensus 171 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (636)
.+.+|.++.---.-.|...++..-+++.||-|+|.++-
T Consensus 64 ~lg~~~l~gipp~p~G~~~I~V~f~id~nGiL~V~a~d 101 (152)
T 2op6_A 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAED 101 (152)
T ss_dssp EEEEEEECCCCCCCTTCSCEEEEEEECTTSCEEEEEEE
T ss_pred EeEEEEEECCCCCCCCCceEEEEEEECCCcEEEEEEEE
Confidence 45666665321112355568888999999999999863
No 10
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=5.17 E-value=7.1e+02 Score=18.14 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=14.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Q 006674 1 MITWKDLYLVLTAVVPLYVAMILAY 25 (636)
Q Consensus 1 mi~~~dMl~Il~~llPLFlLIaLGY 25 (636)
|||-.|.+.+.+.+--...++.+.|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888876665544333333333
Done!