Query 006674
Match_columns 636
No_of_seqs 387 out of 1726
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 05:56:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006674.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006674hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 23.0 2.5E+02 0.018 25.2 13.8 18 13-30 295-312 (447)
2 d1u00a2 b.130.1.1 (A:389-503) 18.4 48 0.0035 27.2 4.0 42 169-210 60-101 (115)
3 d2e74f1 f.23.25.1 (F:1-32) Pet 16.5 65 0.0048 20.8 3.3 21 10-30 5-25 (32)
4 d1dkza2 b.130.1.1 (A:389-506) 14.5 64 0.0047 26.5 3.8 43 168-210 62-104 (118)
5 d2iuba2 f.17.3.1 (A:286-349) M 11.5 82 0.0059 22.9 3.2 22 46-67 12-33 (64)
6 d1oedc_ f.36.1.1 (C:) Acetylch 7.1 1.6E+02 0.012 25.9 4.0 24 7-30 2-25 (260)
7 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.7 3.1E+02 0.022 17.5 3.1 16 72-87 16-31 (34)
8 d2yvxa3 f.57.1.1 (A:276-448) M 4.7 8.2E+02 0.059 20.7 7.3 83 552-635 60-149 (173)
9 d1oedb_ f.36.1.1 (B:) Acetylch 4.7 2.1E+02 0.015 25.1 3.1 23 8-30 3-25 (250)
10 d1oede_ f.36.1.1 (E:) Acetylch 4.2 1.4E+02 0.01 26.5 1.5 23 8-30 3-25 (260)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=23.04 E-value=2.5e+02 Score=25.16 Aligned_cols=18 Identities=6% Similarity=-0.016 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHhHHhh
Q 006674 13 AVVPLYVAMILAYGSVRW 30 (636)
Q Consensus 13 ~llPLFlLIaLGYla~R~ 30 (636)
.+.-++..+..|++..|.
T Consensus 295 ~~~~~~~~~~~g~~~~~~ 312 (447)
T d1pw4a_ 295 EYAGIPGTLLCGWMSDKV 312 (447)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhc
Confidence 344455556677777775
No 2
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=18.45 E-value=48 Score=27.21 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=33.1
Q ss_pred cccceeeeecCcccccCCccccccccccCCCCceEEEEeecC
Q 006674 169 AASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSN 210 (636)
Q Consensus 169 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (636)
..-+..|+++.---.-.|..+++..-++++||.|+|.++--.
T Consensus 60 N~~lg~~~l~~ip~~p~G~~~I~Vtf~id~nGiL~V~A~d~~ 101 (115)
T d1u00a2 60 CRSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKS 101 (115)
T ss_dssp SEEEEEEEECCCCCCSTTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred ceEeeEEEEeCcccCccccccEEEEEEccCCceEEEEEEECC
Confidence 445677777765555568888999999999999999987654
No 3
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.46 E-value=65 Score=20.82 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhHHhh
Q 006674 10 VLTAVVPLYVAMILAYGSVRW 30 (636)
Q Consensus 10 Il~~llPLFlLIaLGYla~R~ 30 (636)
++++.+--|.+|++||.++-.
T Consensus 5 il~aa~lsfglifvgwglgal 25 (32)
T d2e74f1 5 MLYAALLSFGLIFVGWGLGVL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhHHHHH
Confidence 566777789999999988754
No 4
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Probab=14.49 E-value=64 Score=26.54 Aligned_cols=43 Identities=28% Similarity=0.390 Sum_probs=33.3
Q ss_pred ccccceeeeecCcccccCCccccccccccCCCCceEEEEeecC
Q 006674 168 TAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSN 210 (636)
Q Consensus 168 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (636)
....+..|.++..--.-.|...++..-++++||.|+|..+--.
T Consensus 62 ~n~~lg~~~i~~ip~~p~G~~~I~Vtf~iD~nGiL~V~a~d~~ 104 (118)
T d1dkza2 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 104 (118)
T ss_dssp GSEEEEEEEEECCCSCCTTCSCEEEEEEECTTCCEEEEEEETT
T ss_pred CceEEEEEEEcCCccCCCCCcEEEEEEEecCCCeEEEEEEECC
Confidence 3456788888765555567777999999999999999987654
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=11.51 E-value=82 Score=22.91 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=12.6
Q ss_pred HHHHHhHHHHHHHhhcCCcCcc
Q 006674 46 VAIFAVPLLSFHFISTNDPYAM 67 (636)
Q Consensus 46 V~~VALPALLF~~ia~~dl~~l 67 (636)
+--+.+|.-+..++...+...+
T Consensus 12 it~iflP~t~i~gifGMN~~~~ 33 (64)
T d2iuba2 12 IATIFMPLTFIAGIYGMNFEYM 33 (64)
T ss_dssp HHHHHHHHHHHTTSCC------
T ss_pred HHHHHHHHHHHHhhhccCCCCC
Confidence 4557788888888888876644
No 6
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.05 E-value=1.6e+02 Score=25.87 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhh
Q 006674 7 LYLVLTAVVPLYVAMILAYGSVRW 30 (636)
Q Consensus 7 Ml~Il~~llPLFlLIaLGYla~R~ 30 (636)
++-+++.++|.+++.++-++.-+.
T Consensus 2 l~y~~n~~~P~~~~~~l~~~~f~l 25 (260)
T d1oedc_ 2 LFYVINFITPCVLISFLASLAFYL 25 (260)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEhHHHHHHHHHHHHHHHeee
Confidence 356889999999999888887664
No 7
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.74 E-value=3.1e+02 Score=17.53 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 006674 72 IAADTLQKIIMLFVLG 87 (636)
Q Consensus 72 ilay~l~~llvflll~ 87 (636)
|++|.++++.+|+.++
T Consensus 16 wlafslamlfvfiali 31 (34)
T d1xmeb2 16 WLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666677776665443
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=4.73 E-value=8.2e+02 Score=20.68 Aligned_cols=83 Identities=13% Similarity=-0.022 Sum_probs=44.1
Q ss_pred HHHHHHhhhccccch--hhhccchHHHHHHHHHHHHHHHHHHHHHHHhCC---Chh--HHHHHHHHhhcchhhHHHHHHH
Q 006674 552 MAMFSLGLFMALQPK--IIACGNSVATFSMAVRFLTGPAVMAAASIAVGL---RGT--LLHVAIVQAALPQGIVPFVFAK 624 (636)
Q Consensus 552 LALf~IGlsLa~~~~--l~~~~~k~i~~i~liKLIL~PlL~lll~~llgL---~~~--~~~VaVL~AAmP~Av~~~IfA~ 624 (636)
.++..=|+.+...++ ..+.-.|+.....+.=+++.-+ ++...++.+- .-. ..-.+.+..|.=.|+..+++.+
T Consensus 60 ~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~i-~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~lPlll~ 138 (173)
T d2yvxa3 60 ATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFL-LVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAMLPFLLR 138 (173)
T ss_dssp HHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666655431 1122245555555555544433 2333333321 111 1222333345558889999999
Q ss_pred HhCCCCCcccc
Q 006674 625 EYNVHPAILST 635 (636)
Q Consensus 625 ~YG~d~e~ASt 635 (636)
+.|.||..+|.
T Consensus 139 klg~DPA~aS~ 149 (173)
T d2yvxa3 139 RLGVDPALVSN 149 (173)
T ss_dssp HTSCCGGGSCS
T ss_pred HhCCChhhhhh
Confidence 99999999874
No 9
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.69 E-value=2.1e+02 Score=25.06 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhh
Q 006674 8 YLVLTAVVPLYVAMILAYGSVRW 30 (636)
Q Consensus 8 l~Il~~llPLFlLIaLGYla~R~ 30 (636)
+-+++.++|.+++.++-++.-..
T Consensus 3 ~y~~~~~~P~~~i~~l~~~~f~~ 25 (250)
T d1oedb_ 3 FYIVYTIIPCILISILAILVFYL 25 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeHHHHHHHHHHHHHHHhee
Confidence 55788999999988888777664
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.24 E-value=1.4e+02 Score=26.53 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhh
Q 006674 8 YLVLTAVVPLYVAMILAYGSVRW 30 (636)
Q Consensus 8 l~Il~~llPLFlLIaLGYla~R~ 30 (636)
+-+++.++|.+++.++-++.-+.
T Consensus 3 yY~~~lilP~~li~~ls~~~F~l 25 (260)
T d1oede_ 3 FYIINIIAPCVLISSLVVLVYFL 25 (260)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHH
T ss_pred EEEEhHHHHHHHHHHHHHHheEe
Confidence 45788889999998888887775
Done!