Query 006675
Match_columns 636
No_of_seqs 196 out of 341
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jy1_A TDP1, tyrosyl-DNA phosp 100.0 1E-112 5E-117 937.2 27.0 441 145-626 3-463 (464)
2 1q32_A TDP1P;, tyrosyl-DNA pho 100.0 2.2E-99 8E-104 841.0 15.9 426 134-616 55-543 (544)
3 3sq7_A Tyrosyl-DNA phosphodies 100.0 2.1E-98 7E-103 820.0 20.2 402 162-615 3-466 (470)
4 2brf_A Bifunctional polynucleo 99.6 1.1E-15 3.7E-20 137.1 8.0 96 4-109 7-106 (110)
5 1ujx_A Polynucleotide kinase 3 99.5 5.9E-15 2E-19 133.9 7.9 96 4-109 14-113 (119)
6 1yj5_C 5' polynucleotide kinas 99.5 7.6E-15 2.6E-19 136.3 7.8 97 4-110 7-107 (143)
7 3kt9_A Aprataxin; FHA domain, 99.4 9.2E-13 3.2E-17 116.8 7.4 95 5-109 3-100 (102)
8 1lgp_A Cell cycle checkpoint p 97.8 2.3E-05 7.9E-10 70.0 6.0 90 4-101 2-96 (116)
9 1g6g_A Protein kinase RAD53; b 97.1 0.00048 1.7E-08 62.6 5.7 88 5-102 4-108 (127)
10 1gxc_A CHK2, CDS1, serine/thre 97.0 0.0012 4E-08 61.8 7.0 96 5-110 29-141 (149)
11 3va4_A Mediator of DNA damage 96.8 0.0014 4.7E-08 60.3 5.9 98 4-108 22-124 (132)
12 2jqj_A DNA damage response pro 96.6 0.0013 4.3E-08 61.7 4.2 96 4-109 16-123 (151)
13 1wln_A Afadin; beta sandwich, 96.2 0.011 3.8E-07 53.0 7.8 98 4-109 9-113 (120)
14 1dmz_A Protein (protein kinase 96.2 0.0087 3E-07 56.5 7.4 96 6-109 5-122 (158)
15 3fm8_A Kinesin-like protein KI 96.2 0.01 3.4E-07 54.1 7.3 94 6-108 26-122 (124)
16 2jpe_A Nuclear inhibitor of pr 96.1 0.0086 3E-07 55.2 6.8 79 23-105 47-132 (140)
17 2pie_A E3 ubiquitin-protein li 96.0 0.02 6.8E-07 52.6 8.4 85 6-100 9-102 (138)
18 1uht_A Expressed protein; FHA 95.9 0.0065 2.2E-07 54.2 4.8 87 6-101 12-104 (118)
19 2xt9_B Putative signal transdu 95.9 0.0076 2.6E-07 53.6 5.0 78 22-109 23-104 (115)
20 3po8_A RV0020C protein, putati 95.7 0.01 3.6E-07 51.3 5.0 77 21-105 14-94 (100)
21 2csw_A Ubiquitin ligase protei 95.7 0.016 5.4E-07 53.8 6.4 74 23-100 28-110 (145)
22 1r21_A Antigen KI-67; beta san 95.7 0.01 3.5E-07 53.7 4.9 93 5-109 11-107 (128)
23 1g3g_A Protien kinase SPK1; FH 95.5 0.011 3.8E-07 56.0 4.8 88 6-101 33-135 (164)
24 2kb3_A Oxoglutarate dehydrogen 95.5 0.012 4.2E-07 54.6 4.9 78 22-109 58-139 (143)
25 3oun_A Putative uncharacterize 95.5 0.011 3.9E-07 55.9 4.7 72 20-99 75-150 (157)
26 4ejq_A Kinesin-like protein KI 95.4 0.02 6.8E-07 53.8 6.1 96 6-109 38-143 (154)
27 1qu5_A Protein kinase SPK1; FH 95.4 0.025 8.4E-07 54.7 6.7 96 6-109 29-146 (182)
28 3gqs_A Adenylate cyclase-like 95.3 0.014 4.7E-07 51.1 4.4 79 23-109 17-101 (106)
29 1mzk_A Kinase associated prote 94.9 0.021 7.3E-07 52.5 4.5 80 24-109 21-118 (139)
30 2kfu_A RV1827 PThr 22; FHA dom 94.9 0.028 9.6E-07 53.4 5.4 77 23-109 68-148 (162)
31 3hx1_A SLR1951 protein; P74513 94.8 0.034 1.2E-06 50.8 5.6 76 23-105 23-111 (131)
32 3els_A PRE-mRNA leakage protei 93.4 0.045 1.5E-06 51.7 3.4 89 9-101 34-145 (158)
33 2ff4_A Probable regulatory pro 93.0 0.066 2.3E-06 57.0 4.5 78 23-109 299-380 (388)
34 3i6u_A CDS1, serine/threonine- 92.8 0.093 3.2E-06 55.9 5.3 86 5-100 9-110 (419)
35 4h87_A Kanadaptin; FHA domain 92.5 0.1 3.5E-06 47.6 4.3 82 22-109 32-128 (130)
36 4egx_A Kinesin-like protein KI 90.6 0.48 1.6E-05 45.7 7.1 97 5-109 67-173 (184)
37 3elv_A PRE-mRNA leakage protei 90.5 0.29 9.8E-06 48.2 5.4 90 9-102 81-193 (205)
38 1byr_A Protein (endonuclease); 85.0 0.72 2.4E-05 41.7 4.2 39 482-535 91-129 (155)
39 4ggj_A Mitochondrial cardiolip 82.0 1.3 4.5E-05 42.6 4.9 38 481-533 120-157 (196)
40 3hsi_A Phosphatidylserine synt 80.0 1.1 3.8E-05 49.0 3.9 40 480-534 359-398 (458)
41 4a0e_A YSCD, type III secretio 76.7 1.4 4.9E-05 39.9 3.0 49 24-74 18-70 (123)
42 1byr_A Protein (endonuclease); 72.4 3.1 0.00011 37.4 4.2 40 251-293 89-129 (155)
43 1v0w_A Phospholipase D; hydrol 64.8 3.6 0.00012 45.1 3.4 30 251-283 162-191 (506)
44 4gel_A Mitochondrial cardiolip 59.9 5.1 0.00018 38.4 3.2 26 498-534 165-190 (220)
45 4ggj_A Mitochondrial cardiolip 48.2 12 0.00042 35.7 3.6 41 250-293 118-159 (196)
46 3uv0_A Mutator 2, isoform B; F 47.3 14 0.00049 32.3 3.5 67 22-97 12-83 (102)
47 3huf_A DNA repair and telomere 46.1 6.5 0.00022 41.1 1.4 33 24-56 15-53 (325)
48 1v0w_A Phospholipase D; hydrol 38.7 26 0.0009 38.2 4.9 37 252-293 436-472 (506)
49 1xdp_A Polyphosphate kinase; P 31.1 40 0.0014 38.7 4.8 41 483-534 432-475 (687)
50 1xdp_A Polyphosphate kinase; P 24.8 46 0.0016 38.2 3.9 43 481-535 587-629 (687)
51 3hsi_A Phosphatidylserine synt 23.3 36 0.0012 36.9 2.6 56 251-319 359-415 (458)
52 2o8r_A Polyphosphate kinase; s 21.4 52 0.0018 37.9 3.4 42 481-534 593-634 (705)
53 2c1l_A Restriction endonucleas 20.5 62 0.0021 32.9 3.4 39 251-292 100-138 (358)
No 1
>1jy1_A TDP1, tyrosyl-DNA phosphodiesterase; PLD superfamily, hydrolase; 1.69A {Homo sapiens} SCOP: d.136.1.3 d.136.1.3 PDB: 1rff_A* 1mu9_A 1nop_A 1mu7_A* 1rfi_A* 1rg1_A* 1rg2_A* 1rgt_A* 1rgu_A* 1rh0_A* 1qzq_A
Probab=100.00 E-value=1.3e-112 Score=937.24 Aligned_cols=441 Identities=40% Similarity=0.746 Sum_probs=369.6
Q ss_pred CccccccccccCCCCCCCceEEEEecCCCCCCCCCceeecccccc---cHHHhhhhhcccCHHhhhccCCC-CCCCCeEE
Q 006675 145 NSEEALCNFHVSRDKLPSTFRLLRVQGLPAWANTSCVSIRDVIQG---DIIVAILSNYMVDIDWLLPACPV-LAKIPHVL 220 (636)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~FrLtrv~g~~~~~N~~~Itl~DIL~g---dl~~ail~nF~~Dl~WLl~~~p~-~~~~~~i~ 220 (636)
..+|.+++|+......|.+|+||+|.|++..+|.++|||+|||+. +|++|++||||+|++|||++|+. .+++| |+
T Consensus 3 ~~~~~~~~~~~~~~~~p~~~~l~~i~~~~~~~n~~~itl~diL~~~~g~l~~a~~~nf~~D~~WLl~~~~~~~~~~~-v~ 81 (464)
T 1jy1_A 3 DPGEGQDIWDMLDKGNPFQFYLTRVSGVKPKYNSGALHIKDILSPLFGTLVSSAQFNYCFDVDWLVKQYPPEFRKKP-IL 81 (464)
T ss_dssp CTTTTCCGGGTSCTTCSSCEEEBCCTTSCGGGGTTCBCHHHHTSGGGCCEEEEEEECSCBCHHHHHHHSCGGGTTSC-EE
T ss_pred CcccccchhhhhcccCCceEEEEeecCCCcccCCCceeHHHHhCCccccHHHHHhHHhHHhHHHHHhhCcccccCCc-EE
Confidence 456778999988888889999999999998899999999999974 68899999999999999999984 46665 88
Q ss_pred EEeCCCCchhhhh--hhcCCCceEEecCCCCCCCCCccceeEEEEeCCccEEEEeCCCCCccccccccceEEeec-ccCC
Q 006675 221 VIHGESDGTLEHM--KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD-FPLK 297 (636)
Q Consensus 221 Vv~ge~~~~~~~~--~~~~p~n~~l~~p~mp~~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~qD-fP~~ 297 (636)
||||++++....+ .....+|+++|+|+||++|||||||||||+|++|||||||||||+++||+++||+||+|| ||++
T Consensus 82 iv~g~~~~~~~~l~~~~~~~~nv~~~~p~mp~~fGthHsKmmiL~y~~glRVVI~TANL~~~DW~~~tQ~vW~sd~lP~~ 161 (464)
T 1jy1_A 82 LVHGDKREAKAHLHAQAKPYENISLCQAKLDIAFGTHHTKMMLLLYEEGLRVVIHTSNLIHADWHQKTQGIWLSPLYPRI 161 (464)
T ss_dssp EEECCCHHHHHHHHHHHTTCTTEEEEECCCCSTTCCBCCCEEEEEESSCEEEEEECCCBSGGGGTSSBCEEEECCCBCBC
T ss_pred EEeCCCcccchhhHHhhccCCCeEEEeCCCCCcccccchhhheeecCCceEEEEeCCCCChhHhccccceEEecccCcCC
Confidence 8899865432222 223567999999999999999999999999999999999999999999999999999999 7987
Q ss_pred CCCC---CCCCCCcHHHHHHHHHhcCCCcccccCCCCCCccccccccccccccccceEEEEccCCCCCCCccccccHHHH
Q 006675 298 DQNN---LSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSAAVRLIASVPGYHTGSSLKKWGHMKL 374 (636)
Q Consensus 298 ~~~s---~~~~t~Fk~DLi~YL~ay~~~~~~~~~p~lg~~~I~~~~L~~yDFS~a~v~LVaSVPG~H~g~~~~~~G~~~L 374 (636)
+..+ .+++++|++||++||++|+.+.... ++++|++||||.++|+||+||||+|.|.+..+|||++|
T Consensus 162 ~~~~~~~~~~~~~Fk~dL~~yL~ay~~~~~~~----------~i~~L~~~DFS~~~v~LVaSvPG~h~~~~~~~~G~~~L 231 (464)
T 1jy1_A 162 ADGTHKSGESPTHFKANLISYLTAYNAPSLKE----------WIDVIHKHDLSETNVYLIGSTPGRFQGSQKDNWGHFRL 231 (464)
T ss_dssp CTTCCCCCCCTTCHHHHHHHHHHTTCCGGGHH----------HHHHHHTBCCTTCCSEEEEECSEEEEGGGGGGSHHHHH
T ss_pred CccccccCCCCCchHHHHHHHHHHhCCchhHH----------HHHHHHhcCCcccCcEEEEeCCcCCcCCcchhhhHHHH
Confidence 5433 3678999999999999998764321 25889999999999999999999999999999999999
Q ss_pred HHHHhhccccC-CCcccCeEEEecCCCcCC---hHHH-HHHHhcccCCCCCCCCC-CCCCCceEEccCchhhhcCccccc
Q 006675 375 RTVLQECTFEK-GFKKSPLVYQFSSLGSLD---EKWM-AELSSSMSSGFSEDKTP-LGIGEPLIVWPTVEDVRCSLEGYA 448 (636)
Q Consensus 375 ~~~L~~~~~~~-~~~~~~i~~Q~SSIGsl~---~~wL-~~f~~sl~~g~~~~~~~-~~~~~~~IIfPT~e~Vr~S~~G~~ 448 (636)
+++|+++.... ..+.++|+||+||||+++ .+|| ++|..+|.+...+.+.+ ...++++|||||+||||+|.+||.
T Consensus 232 ~~~L~~~~~~~~~~~~~~i~~Q~SSIGslg~~~~~Wl~~~f~~sl~~~~~~~~~~~~~~~~~~iifPT~e~Vr~S~~G~~ 311 (464)
T 1jy1_A 232 KKLLKDHASSMPNAESWPVVGQFSSVGSLGADESKWLCSEFKESMLTLGKESKTPGKSSVPLYLIYPSVENVRTSLEGYP 311 (464)
T ss_dssp HHHHHHHC-----CCSCCEEEECSCBCCCCSSTTTTTTTTHHHHHTCCC---------CCCEEEECCBHHHHHTSSSCGG
T ss_pred HHHHHHhccCCCccCCCcEEEEeecccccCcchhHHHHHHHHHHhhhhcccccccccCCCceEEEcCCHHHHHhcccccC
Confidence 99999987643 225789999999999997 5899 68999987753222111 234679999999999999999999
Q ss_pred CCccccCCCccch-hHhHHHHHhhhcCCCCCCCCCCCcceeEEeecC--CceeEEEEeccccchhhhhccccCCceeeee
Q 006675 449 AGNAIPSPQKNVD-KDFLKKYWAKWKASHTGRSRAMPHIKTFARYNG--QKLAWFLLTSANLSKAAWGALQKNNSQLMIR 525 (636)
Q Consensus 449 ~Ggsi~~~~~~~~-~~~l~~~~~kw~~~~s~R~~a~PHiKty~r~~~--~~i~W~lltSaNLSkaAWG~l~k~~sql~Ir 525 (636)
+|||||++.++++ +.|+++|||+|+++.++|+++|||||+|+|++. ..++|+||||||||+||||+++++++||+||
T Consensus 312 ~ggsi~~~~~~~~~~~~l~~~l~~w~~~~~~R~~a~pHiKty~r~~~~~~~~~W~lltSaNLSkaAWG~~~k~~~~l~I~ 391 (464)
T 1jy1_A 312 AGGSLPYSIQTAEKQNWLHSYFHKWSAETSGRSNAMPHIKTYMRPSPDFSKIAWFLVTSANLSKAAWGALEKNGTQLMIR 391 (464)
T ss_dssp GGGGSCCCHHHHTTCGGGGGGEECCCCGGGTCTTSCBCCEEEEEECTTSSEEEEEEEESCCBSHHHHCEEETTTTEEEEC
T ss_pred CcceeeccchhhhhhhhhHHHHHHhccCccCCCCcCCceeeEEecCCCCCeecEEEEccccCCHHHhCccccCCCceeEe
Confidence 9999999866554 469999999999999999999999999999985 4799999999999999999999999999999
Q ss_pred eeeeeeEEcCCcccCCCccccccCCCCccccCCCccchhcccceeeeeecCCCCCCCCCCcceeeccccCCCCCCCCCCC
Q 006675 526 SYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSED 605 (636)
Q Consensus 526 NyElGVL~~P~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pvPy~LP~~~Y~~~D 605 (636)
||||||||+|..+.+. .|++.. +.++ . .....+.|||||++|++||+++|
T Consensus 392 nyElGVl~~P~~~~~~-~~~~~~--------------------~~~~----~-----~~~~~~~~~vPy~lP~~~Y~~~D 441 (464)
T 1jy1_A 392 SYELGVLFLPSALGLD-SFKVKQ--------------------KFFA----G-----SQEPMATFPVPYDLPPELYGSKD 441 (464)
T ss_dssp SBEEEEEECGGGGTCS-CEEEC----------------------------------------CEECCSSCSSCCBCCTTC
T ss_pred eeeeeEEEeccccccc-ccccCc--------------------cccc----c-----ccCcccceeecCCCCCcCCCCCC
Confidence 9999999999875432 122110 0000 0 01224689999999999999999
Q ss_pred CCceecCCCCCc-ccCCCCccc
Q 006675 606 VPWSWDKRYTKK-DVYGQVWPR 626 (636)
Q Consensus 606 ~PW~~~~~y~~p-D~~G~~w~~ 626 (636)
+||+++++|.+| |++|++|++
T Consensus 442 ~Pw~~~~~~~~~~D~~G~~w~p 463 (464)
T 1jy1_A 442 RPWIWNIPYVKAPDTHGNMWVP 463 (464)
T ss_dssp CBCCTTSCBCSSCCTTSCCBCC
T ss_pred CCeeCCCCCCCcccCCcCcCCC
Confidence 999999999997 999999986
No 2
>1q32_A TDP1P;, tyrosyl-DNA phosphodiesterase; DNA repair, replication, transcription, hydrolase, replication,transcription, hydrolase; 2.03A {Saccharomyces cerevisiae} SCOP: d.136.1.3 d.136.1.3
Probab=100.00 E-value=2.2e-99 Score=840.97 Aligned_cols=426 Identities=18% Similarity=0.260 Sum_probs=309.1
Q ss_pred hcccccCCCCCCccccccccccCCCCCCCceEEEEecCCCCC----CCCCceeecccccc-cHHHhhhhhcccCHHhhhc
Q 006675 134 QQDEQDNENGKNSEEALCNFHVSRDKLPSTFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLP 208 (636)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FrLtrv~g~~~~----~N~~~Itl~DIL~g-dl~~ail~nF~~Dl~WLl~ 208 (636)
.+|++.+.+++...+..++.. ..+++||||+++++++.+ +|.++|+|+|||++ +|+.|++||||+|++|||+
T Consensus 55 ~~vi~l~~~~~~~~~~~~~~~---~~~~spf~L~~~~~~~~~~~~~~n~~~isl~dlL~~~~l~~a~~~nF~~Di~WLl~ 131 (544)
T 1q32_A 55 SKIIDLTNQEQDLSERIETND---TAKGAVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLR 131 (544)
T ss_dssp ---------------------------CCEEEEECCTTTTCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHT
T ss_pred cceEECCCccccccccCcccc---cCCCCCeEEEEecccCcccccCCCCCceeHHHHcCCchHHHHHHHHHHHhHHHHHh
Confidence 345566555544433322211 247789999999999875 58899999999985 6889999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCCc---hhhhh---hhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCCccc
Q 006675 209 ACPVLAKIPHVLVIHGESDG---TLEHM---KRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVD 281 (636)
Q Consensus 209 ~~p~~~~~~~i~Vv~ge~~~---~~~~~---~~~~p~n~~l~~p~mp~~fGtHHSKmmLL~y~dg-lRVVI~TANLi~~D 281 (636)
+|+.. +..|+||||+... ....+ .+..++|+++|+|+||. |||||||||||+|+|| ||||||||||+++|
T Consensus 132 ~~~~~--~~~v~iv~g~~~~~~~~r~~~~~~~~~~~~nv~l~~p~mp~-fGthHSKmmlL~y~dg~lRVVI~TANLi~~D 208 (544)
T 1q32_A 132 QFHQN--VENITIVGQKGTIMPIEARAMDATLAVILKKVKLIEITMPP-FASHHTKLIINFYDNGECKIFLPSNNFTSME 208 (544)
T ss_dssp TSCTT--CCEEEEEEETTCEECCCGGGCCHHHHHHHTTEEEEEECCCT-TCCBCCCEEEEEESTTEEEEEEESSCBSHHH
T ss_pred hCccc--CCcEEEEecCCcCCchhhhhhhHHhhccCCCeEEEeCCCCC-CCCCCceeEEEEecCCCEEEEEeCCCCChHH
Confidence 99853 3368888887542 11111 11124699999999998 9999999999999998 99999999999999
Q ss_pred cccccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhcCCCcccccCCCCCCcccccccccccccccc-ceEEEEccCCC
Q 006675 282 WNNKSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGY 360 (636)
Q Consensus 282 W~~~tQ~vW~qDfP~~~~~s~~~~t~Fk~DLi~YL~ay~~~~~~~~~p~lg~~~I~~~~L~~yDFS~a-~v~LVaSVPG~ 360 (636)
|+++||+||+|||+.+. +.+.+++|+.||++||++|+.+.+..+ | ++.|++||||.+ +|+||+||||+
T Consensus 209 W~~~tQ~vW~sp~lp~~--s~g~~~~Fk~dL~~yL~ay~~~~l~~~--------i-i~~l~~~DFS~~~~v~lV~SvPG~ 277 (544)
T 1q32_A 209 TNLPQQVCWCSPLLKIG--KEGLPVPFKRSLIEYLNSYHLKDIDEL--------I-TKSVEEVNFAPLSELEFVYSTPSK 277 (544)
T ss_dssp HHSSBCEEEECCCEEEC--CCSSCCHHHHHHHHHHHTTCCHHHHHH--------T-HHHHHTEECGGGTTCEEEEECCCT
T ss_pred hccccceEEECCccccc--CCCCCCchHHHHHHHHHHcCCcccchH--------H-HHHHHhcCcccCCceEEEEecCCc
Confidence 99999999999954322 234579999999999999998643221 1 478999999999 99999999999
Q ss_pred CCCCccccccHHHHHHHHhhcc--ccCCCcccCeEEEecCCCc-CC-hHHHHHHHhcccC---CC-----CC-CCCCC--
Q 006675 361 HTGSSLKKWGHMKLRTVLQECT--FEKGFKKSPLVYQFSSLGS-LD-EKWMAELSSSMSS---GF-----SE-DKTPL-- 425 (636)
Q Consensus 361 H~g~~~~~~G~~~L~~~L~~~~--~~~~~~~~~i~~Q~SSIGs-l~-~~wL~~f~~sl~~---g~-----~~-~~~~~-- 425 (636)
|.| |||++|+++|++++ +....+.++|+||+||||+ ++ ++||++|..+|.. |. .. ...+.
T Consensus 278 h~~-----~G~~~L~~~L~~~~~~~~~~~~~~~iv~Q~SSIGs~l~~~~Wl~~f~~~l~~~~~g~~~~~~~~~~~~~k~~ 352 (544)
T 1q32_A 278 FQS-----SGLLSFYNKLEKLSAGTSASDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAE 352 (544)
T ss_dssp TSC-----CHHHHHHHHHHHTC------CCEEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------
T ss_pred cCC-----ccHHHHHHHHHHhhccCCCCCCCCcEEEEecccccccCcchhHHHHHHHHhhhhccccccCccccccccccc
Confidence 998 69999999999987 4433446899999999999 76 5888777655422 11 11 00000
Q ss_pred -------------CCCCceEEccCchhhhcCcccccCCccccCCCcc---chhHhHHHHHhhhcC----CCCCCCCCCCc
Q 006675 426 -------------GIGEPLIVWPTVEDVRCSLEGYAAGNAIPSPQKN---VDKDFLKKYWAKWKA----SHTGRSRAMPH 485 (636)
Q Consensus 426 -------------~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~---~~~~~l~~~~~kw~~----~~s~R~~a~PH 485 (636)
...+++|||||++|||+|.+||.+|||||++.+. ..++|+++++|+|++ ..++|++||||
T Consensus 353 ~~~~~~l~~~~~~~~~~~~IIfPT~e~Vr~S~~G~~~Ggsi~~~~~~~~~~~~~~l~~~~~~w~~~~~~~~s~R~~a~PH 432 (544)
T 1q32_A 353 ILPTNSLINEYSQRKIKPYIIFPTEQEFVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPAH 432 (544)
T ss_dssp CCCHHHHHHHHHHHTEEEEEECCBSGGGTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBC
T ss_pred ccccchhcccccccCCCceEEcCCHHHHhhcccccCccceEEeccchhhhhhhHHHhhhhhhccCCCccccCCCCCccCc
Confidence 1356899999999999999999999999986432 345799999999987 57899999999
Q ss_pred ceeEEeec------------CCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcCCccc-CCC--ccccccCC
Q 006675 486 IKTFARYN------------GQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKR-HGC--GFSCTSNI 550 (636)
Q Consensus 486 iKty~r~~------------~~~i~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~P~~~~-~~~--~f~~~~~~ 550 (636)
||+|+|++ .+.++||||||||||+||||+++| +|||||||||| |..+. +.. .++|.
T Consensus 433 iKty~r~~~~~~~~~~~~~~~~~i~W~lltSaNLSkaAWG~~~k-----~irnyElGVL~-P~~~~~~~~~~~~p~~--- 503 (544)
T 1q32_A 433 SKFYMHCATNSAGPCDASQVFKELEWCLYTSANLSQTAWGTVSR-----KPRNYEAGVLY-HSRRLANTRKVTCRTF--- 503 (544)
T ss_dssp CEEEEEEEECC-------CTTSEESEEEEESCCBSHHHHCCSSS-----CCSSBEEEEEE-EGGGC---CCEEEEEG---
T ss_pred eEEEEeeccccccccccCCCccceeEEEEccccCCHHHhhhhhc-----cccceEeEEEe-cccccccccceecccc---
Confidence 99999986 257999999999999999999986 69999999999 65421 111 11111
Q ss_pred CCccccCCCccchhcccceeeeeecCCCCCCCCCCcceeeccccCCCCCCCCCCCCCceecCCCCC
Q 006675 551 VPSEIKSGSTETSQIQKTKLVTLTWHGSSDAGASSEVVYLPVPYELPPQRYSSEDVPWSWDKRYTK 616 (636)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~pvPy~LP~~~Y~~~D~PW~~~~~y~~ 616 (636)
..+.. +.....+.|||||+||++||+++|+||+++.+|.+
T Consensus 504 -------------------------~~d~~-~~~~~~~~~~vPydlP~~~Y~~~D~Pw~~~~~~~~ 543 (544)
T 1q32_A 504 -------------------------TRDRR-GCAGNPTHVAVPFTLPVIPYDLAEDECFCLARHEN 543 (544)
T ss_dssp -------------------------GGC--------CCSEEESSCSSCEECCTTTCCBCCC-----
T ss_pred -------------------------cccCc-ccccCcccccccCCCCcccCCCCCCCccccccccc
Confidence 00000 00112367999999999999999999999999975
No 3
>3sq7_A Tyrosyl-DNA phosphodiesterase 1; DNA binding, nuclear, hydrolase; 2.00A {Saccharomyces cerevisiae} PDB: 3sq5_A 3sq8_A* 3sq3_A
Probab=100.00 E-value=2.1e-98 Score=820.01 Aligned_cols=402 Identities=19% Similarity=0.300 Sum_probs=316.8
Q ss_pred CceEEEEecCCCCC----CCCCceeecccccc-cHHHhhhhhcccCHHhhhccCCCCCCCCeEEEEeCCCCch-----h-
Q 006675 162 STFRLLRVQGLPAW----ANTSCVSIRDVIQG-DIIVAILSNYMVDIDWLLPACPVLAKIPHVLVIHGESDGT-----L- 230 (636)
Q Consensus 162 ~~FrLtrv~g~~~~----~N~~~Itl~DIL~g-dl~~ail~nF~~Dl~WLl~~~p~~~~~~~i~Vv~ge~~~~-----~- 230 (636)
.+|||+++++||.+ .|.++|||+|||++ +|++|++||||+|++|||++|+.. ++.|+||+++.+.. .
T Consensus 3 ~~fkL~~~~~y~~~~~~~~n~d~ItL~DlL~~~~L~~avlfnF~~Di~WLl~~~~~~--~~~v~iv~~~g~~~~~~~~~~ 80 (470)
T 3sq7_A 3 AVFKLMKSDFYEREDFMGEVEDMITLKDIFGTETLKRSILFSFQYELDFLLRQFHQN--VENITIVGQKGTIMPIEARAM 80 (470)
T ss_dssp CEEEEECCTTTSCCC-------EECHHHHHCCTTEEEEEEECSCEEHHHHHTTSCTT--CCEEEEEEETTSEECCCGGGC
T ss_pred CceEEEeecCcCccccccCCCCceeHHHhcCCchHHHHHhhhhhhcHHHHHhhCccc--cCceEEEEeCCcccccchhhh
Confidence 57999999999986 68899999999986 578999999999999999999863 34567776443221 1
Q ss_pred -hhhhhcCCCceEEecCCCCCCCCCccceeEEEEeCCc-cEEEEeCCCCCccccccccceEEeecccCCCCCCCCCCCCc
Q 006675 231 -EHMKRNKPANWILHKPPLPISFGTHHSKAMLLIYPRG-VRIIVHTANLIHVDWNNKSQGLWMQDFPLKDQNNLSEECGF 308 (636)
Q Consensus 231 -~~~~~~~p~n~~l~~p~mp~~fGtHHSKmmLL~y~dg-lRVVI~TANLi~~DW~~~tQ~vW~qDfP~~~~~s~~~~t~F 308 (636)
+...+. .+|+++|.|+|| +|||||||||||+|+|| ||||||||||+++||+..||+|| |+|+++......+++|
T Consensus 81 ~~~~~~~-~~nv~~i~~~mP-~fGthHsKmmlL~y~dg~~RVvI~TANl~~~Dw~~~tq~~W--~~P~l~~~~~~~~s~F 156 (470)
T 3sq7_A 81 DATLAVI-LKKVKLIEITMP-PFASHHTKLIINFYDNGECKIFLPSNNFTSMETNLPQQVCW--CSPLLKIGKEGLPVPF 156 (470)
T ss_dssp CHHHHHH-HTTEEEEEECCC-TTCCBCCCEEEEEETTSEEEEEEESSCBSHHHHHSSBCEEE--ECCCEEECCCCSCCHH
T ss_pred hHHHHhh-cCCceEEecCCC-CcCCccceeEEEEecCCCEEEEEecCCCChhhhcccceEEE--EccCCcCCCCCCCCcc
Confidence 112222 248999999999 99999999999999998 99999999999999999999999 4555542223456799
Q ss_pred HHHHHHHHHhcCCCcccccCCCCCCcccccccccccccccc-ceEEEEccCCCCCCCccccccHHHHHHHHhhccccC--
Q 006675 309 ENDLIDYLSTLKWPEFSANLPAHGNFKINPSFFKKFNFSSA-AVRLIASVPGYHTGSSLKKWGHMKLRTVLQECTFEK-- 385 (636)
Q Consensus 309 k~DLi~YL~ay~~~~~~~~~p~lg~~~I~~~~L~~yDFS~a-~v~LVaSVPG~H~g~~~~~~G~~~L~~~L~~~~~~~-- 385 (636)
++||++||++|+.+.+. ..+++.|++||||.+ +|+||+||||+|. +|||++|+++|+++.+..
T Consensus 157 k~dL~~yL~~y~~~~l~---------~~~i~~l~~~DFS~~~~v~lV~SvPG~~~-----~~G~~~L~~~L~~~~~~~~~ 222 (470)
T 3sq7_A 157 KRSLIEYLNSYHLKDID---------ELITKSVEEVNFAPLSELEFVYSTPSKFQ-----SSGLLSFYNKLEKLSAGTSA 222 (470)
T ss_dssp HHHHHHHHHTTCCHHHH---------HHTHHHHHTEECGGGTTCEEEEECCCTTS-----CCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHhCCchhH---------HHHHHHHHhCCCCCCCcEEEEEecCCCCc-----cchHHHHHHHHHHhccCCCc
Confidence 99999999999986531 112578999999999 5999999999984 599999999999988643
Q ss_pred CCcccCeEEEecCCCc-CCh----HHHHH-HHhcccCCCCC------CC----CC----------CCCCCceEEccCchh
Q 006675 386 GFKKSPLVYQFSSLGS-LDE----KWMAE-LSSSMSSGFSE------DK----TP----------LGIGEPLIVWPTVED 439 (636)
Q Consensus 386 ~~~~~~i~~Q~SSIGs-l~~----~wL~~-f~~sl~~g~~~------~~----~~----------~~~~~~~IIfPT~e~ 439 (636)
..++++|+||+||||+ ++. +||++ |..+|++.... .+ .+ ....+++|||||+||
T Consensus 223 ~~~~~~iv~Q~SSIGs~l~~~~~~~~f~~~l~~~lsg~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~iIfPTvee 302 (470)
T 3sq7_A 223 SDTAKHYLCQTSSIGTSLSRARDENLWTHLMIPLFTGIMSPPAKDTAGRKKAEILPTNSLINEYSQRKIKPYIIFPTEQE 302 (470)
T ss_dssp CSSCEEEEEECSBBCCCSCSSSCCCHHHHTHHHHHHTSCCCC-----------CCCHHHHHHHHHHTTEEEEEECCBTGG
T ss_pred ccCCCcEEEEeCCcccCCCCccchhHHHHHHHHHhhcccCccccccccccccccCCccchhhhhccCCCCeEEEcCCHHH
Confidence 2357899999999999 984 58876 44445432211 01 01 013468999999999
Q ss_pred hhcCcccccCCccccCCCccch--hHhHH---HHHhhhcCC--CCCCCCCCCcceeEEeecC------------CceeEE
Q 006675 440 VRCSLEGYAAGNAIPSPQKNVD--KDFLK---KYWAKWKAS--HTGRSRAMPHIKTFARYNG------------QKLAWF 500 (636)
Q Consensus 440 Vr~S~~G~~~Ggsi~~~~~~~~--~~~l~---~~~~kw~~~--~s~R~~a~PHiKty~r~~~------------~~i~W~ 500 (636)
||+|.+||.+|||||++.++.. +.|++ +|||||+++ ..+|+++|||||||+|++. +.++||
T Consensus 303 Vr~S~~Gy~aGgsip~~~~~~~~q~~~l~~~~~~~~kw~~~~~~~~R~~a~PHiKtY~r~s~~~~~~~~~~~~~~~i~W~ 382 (470)
T 3sq7_A 303 FVTSPLKWSSSGWFHFQYLQKKSYYEMLRNKFKVFYKQDPAMVTRRRGTTPANSKFYMHCATNSAGPCDASQVFKELEWC 382 (470)
T ss_dssp GTTSTTGGGGGGGCBCCCGGGHHHHHHHHHTSCCEEECCTTTSCTTTTTCCBCCEEEEEEEC--------CCTTSEESEE
T ss_pred HhcCccccccCceeeecccchHHHHHHHhcccceEecccCcCCCCCCCCcCCceEEEEEecccccccccccCCCceeeEE
Confidence 9999999999999999976553 36887 799999986 5689999999999999874 579999
Q ss_pred EEeccccchhhhhccccCCceeeeeeeeeeeEEcCCcccCCCccccccCCCCccccCCCccchhcccceeeeeecCCCCC
Q 006675 501 LLTSANLSKAAWGALQKNNSQLMIRSYELGVLILPSAKRHGCGFSCTSNIVPSEIKSGSTETSQIQKTKLVTLTWHGSSD 580 (636)
Q Consensus 501 lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~P~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 580 (636)
|||||||||||||+++| +||||||||||+|.++.+..++.|.++.+...+ .+
T Consensus 383 LlTSaNLSkaAWG~l~k-----~irsYElGVL~~p~~~~~~~~~~~~~~~~~~~~-----------------------~~ 434 (470)
T 3sq7_A 383 LYTSANLSQTAWGTVSR-----KPRNYEAGVLYHSRRLANTRKVTCRTFTRDRRG-----------------------CA 434 (470)
T ss_dssp EEESCCBSHHHHCCSSS-----CCSSBEEEEEEEGGGSSSSCCEEEEEGGGC----------------------------
T ss_pred EEecccCCHHHhhhhcc-----CCcceeeeEEEccccccccceeecccccccccc-----------------------cc
Confidence 99999999999999987 689999999999998766555556555322100 00
Q ss_pred CCCCCcceeeccccCCCCCCCCCC-CCCceecCCCC
Q 006675 581 AGASSEVVYLPVPYELPPQRYSSE-DVPWSWDKRYT 615 (636)
Q Consensus 581 ~~~~~~~~~~pvPy~LP~~~Y~~~-D~PW~~~~~y~ 615 (636)
...+.|||||+||++||+++ |+|||....|.
T Consensus 435 ----~~~~~~~vPf~lP~~~Y~~~~D~p~~~~~~~~ 466 (470)
T 3sq7_A 435 ----GNPTHVAVPFTLPVIPYDLAEDECFCLALEHH 466 (470)
T ss_dssp ------CCSEEESSCSSCEECCTTTCCBCCCCCTTC
T ss_pred ----CCCceeeecCCCCCccCCCCCCcceeeehhhc
Confidence 12467999999999999999 99999876653
No 4
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.60 E-value=1.1e-15 Score=137.10 Aligned_cols=96 Identities=23% Similarity=0.325 Sum_probs=86.7
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCcc-ccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcc
Q 006675 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNIP-VSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (636)
..+.+|+|++.+ .|.|+|+ .|+++|||+... +.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 7 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGR~p~t~I~DkrcSR~hv~L~ad~~~~~v~vk~lG~Np~~vng---- 76 (110)
T 2brf_A 7 PGRLWLESPPGE------APPIFLPSDGQALVLGRGPLTQVTDRKCSRTQVELVADPETRTVAVKQLGVNPSTTGT---- 76 (110)
T ss_dssp -CEEEEECSTTS------SCCEECCSTTCCEEECSBTTTTBCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEEC-----
T ss_pred CcEEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccceeeeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 458899998743 7899996 799999999987 999999999999999886 89999999999999987
Q ss_pred cccccccccccccCCccccCCCCccceeee
Q 006675 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
++|..++++++.+||++||+||.|+|+++-
T Consensus 77 ~~l~k~~~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 77 QELKPGLEGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CBCCTTCEEEEETTCEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEecCCCEEEEccCCeEEEEEe
Confidence 899999999999999999999999998765
No 5
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.55 E-value=5.9e-15 Score=133.88 Aligned_cols=96 Identities=23% Similarity=0.306 Sum_probs=87.5
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcc
Q 006675 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (636)
..+-+|+|++.+ .|.|+|+ .|+++|||+.. .+.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 14 ~~~c~L~~~~~~------~~~I~Lp~~~g~~viGRgp~t~I~DkrcSR~qv~L~ad~~~~~v~vk~lG~NP~~vng---- 83 (119)
T 1ujx_A 14 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 83 (119)
T ss_dssp CCCEEEECCSSS------CCCCCCCTTSCCEEESBBTTTTBCCTTSCTTSEEEEEETTTTEEEEEECSSSCCBSSS----
T ss_pred cceEEEEeCCCC------CCcEEeccCCCCEEEcCCCCcccccccccceeEEEEEecCCCEEEEEEcccCCcEECC----
Confidence 347899998744 7899996 79999999998 8999999999999999886 89999999999999876
Q ss_pred cccccccccccccCCccccCCCCccceeee
Q 006675 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
++|..++++++.+||++||+||.|+|+++-
T Consensus 84 ~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f 113 (119)
T 1ujx_A 84 QELKPGLSGSLSLGDVLYLVNGLYPLTLRW 113 (119)
T ss_dssp SBCCTTCEEEEETTCCCBCBTTBSCCEEEE
T ss_pred EEecCCCEEEecCCCEEEEecCCeEEEEEe
Confidence 799999999999999999999999999776
No 6
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.54 E-value=7.6e-15 Score=136.28 Aligned_cols=97 Identities=23% Similarity=0.290 Sum_probs=88.9
Q ss_pred cceeeEeeCCCCccCCCCCCcccCC--CCCccccCCCc-cccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcc
Q 006675 4 TKIGYLVPLDNNLREDNSLPKLPLS--QGPNVIGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQR 79 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (636)
.++.||+|++.+ .|.|.|+ .|+++|||+.. .|.|||+||+|+.|+++.+ |.+.+...|+||..|++
T Consensus 7 ~~~c~L~p~d~~------~~~I~Lp~~~g~vvIGRgPet~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG~NP~~vng---- 76 (143)
T 1yj5_C 7 RGRLWLQSPTGG------PPPIFLPSDGQALVLGRGPLTQVTDRKCSRNQVELIADPESRTVAVKQLGVNPSTVGV---- 76 (143)
T ss_dssp CEEEEEECCTTS------CCCEECCTTTCEEEECSBTTTTBCCSSSCSSCEEEEEETTTTEEEEEECSSSCCEETT----
T ss_pred CCeEEEEecCCC------CCcEEeccCCCCEEEcCCCccccccccccceeEEEEEecCCCeEEEEEcccCCcEECC----
Confidence 458899998743 7899996 79999999998 8999999999999999886 89999999999999986
Q ss_pred cccccccccccccCCccccCCCCccceeeee
Q 006675 80 KKLSSNEHVSIADGDIIELIPGHHFFKYVTL 110 (636)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 110 (636)
++|..++++++.+||++||+||.|+|+++.+
T Consensus 77 ~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~ 107 (143)
T 1yj5_C 77 HELKPGLSGSLSLGDVLYLVNGLYPLTLRWE 107 (143)
T ss_dssp EECCTTCEEEECTTCEEESSSSCSEEEEEEE
T ss_pred EEecCCCEEEecCCCEEEEecCCceEEEEec
Confidence 8999999999999999999999999998874
No 7
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.36 E-value=9.2e-13 Score=116.79 Aligned_cols=95 Identities=21% Similarity=0.383 Sum_probs=84.4
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCcc-ccCCCc-cccccccccceeEEEecCC-cceEEEeecCCcEEEeeCCcccc
Q 006675 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNV-IGRTNI-PVSDKRLSRKHITLTASAD-GSASLVVDGTNPVVVKSGDQRKK 81 (636)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 81 (636)
+.-||+|.+ ++.|.|.|+.|.+| |||+.. .+.|||.||+|..|+++.+ |.+.+...|+||..|+ -++
T Consensus 3 ~~c~L~~~~------~~~~~I~L~~g~~v~iGR~p~t~I~DkrcSR~h~~L~~~~~~g~v~vk~lg~Np~~vn----g~~ 72 (102)
T 3kt9_A 3 RVCWLVRQD------SRHQRIRLPHLEAVVIGRGPETKITDKKCSRQQVQLKAECNKGYVKVKQVGVNPTSID----SVV 72 (102)
T ss_dssp CEEEEEETT------STTCEEECCBTCEEEECSSTTTCCCCTTSCSSCEEEEEETTTTEEEEEECSSSCCEET----TEE
T ss_pred ceEEEEecC------CCCCcEEcCCCCcEEeccCCccccccCcccCcceEEEEecCCCEEEEEECcCCCCeEC----CEE
Confidence 456888864 55899999999997 599988 7999999999999999984 7889999999999994 379
Q ss_pred cccccccccccCCccccCCCCccceeee
Q 006675 82 LSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
+..++.+.+.+||+++|.||.|.|+.+-
T Consensus 73 l~k~~~~~L~~GD~l~Ll~~~~~~~v~f 100 (102)
T 3kt9_A 73 IGKDQEVKLQPGQVLHMVNELYPYIVEF 100 (102)
T ss_dssp CCBTCEEEECTTCCEEEETTEEEEEEEE
T ss_pred cCCCCeEEeCCCCEEEEccCCceEEEEe
Confidence 9999999999999999999999998553
No 8
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=97.80 E-value=2.3e-05 Score=70.04 Aligned_cols=90 Identities=21% Similarity=0.335 Sum_probs=72.7
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCCCCccccCC---Ccccccc-ccccceeEEEecC-CcceEEEeecCCcEEEeeCCc
Q 006675 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDK-RLSRKHITLTASA-DGSASLVVDGTNPVVVKSGDQ 78 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (636)
...|+|+||+.+. ..+.++|..+..+|||+ +|++.|. .+||+|.+|+... +|.+.|.=..+|.+.|+.
T Consensus 2 ~~wg~L~~~~~~~----~~~~~~l~~~~~~iGR~~~~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D~S~NGt~vng--- 74 (116)
T 1lgp_A 2 QPWGRLLRLGAEE----GEPHVLLRKREWTIGRRRGCDLSFPSNKLVSGDHCRIVVDEKSGQVTLEDTSTSGTVINK--- 74 (116)
T ss_dssp CCCEEECCTTCCS----SSCCEEECSSEEEEESSTTSSEECTTCTTSCTTCEEEEECTTTCCEEEEECSSSCCCCCC---
T ss_pred CCEEEEEEeCCCC----CccEEEECCCCEEECCCCCCCEEeCCCCCCChhHeEEEEECCCCeEEEEECCcCCcEECC---
Confidence 4689999997643 24678999999999995 5888775 8999999999984 788877777789888863
Q ss_pred ccccccccccccccCCccccCCC
Q 006675 79 RKKLSSNEHVSIADGDIIELIPG 101 (636)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~ 101 (636)
+++..++.+.+.+||+|.+-..
T Consensus 75 -~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 75 -LKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp -CCCCCSSCCCCCTTCEEEEECC
T ss_pred -EEcCCCCcEECCCCCEEEEecc
Confidence 3677777888999999998764
No 9
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=97.13 E-value=0.00048 Score=62.61 Aligned_cols=88 Identities=24% Similarity=0.296 Sum_probs=70.0
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCC-------------CccccCC---Ccccccc-ccccceeEEEecCCcceEEEeec
Q 006675 5 KIGYLVPLDNNLREDNSLPKLPLSQG-------------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDG 67 (636)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 67 (636)
.++.|++++.. .|.+.|... ..+|||+ +|++.|. ++||+|..|....+|.+.|.--.
T Consensus 4 ~~~~L~~~~~~------~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~~~di~l~~~~~vSr~Ha~i~~~~~g~~~l~DlS 77 (127)
T 1g6g_A 4 IVCRVICTTGQ------IPIRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDIS 77 (127)
T ss_dssp EEEEEEESSSS------SCCEEEEECHHHHHHCCSSCCEEEEEESSTTSSEECCSCTTSCSSCEEEEECTTSCEEEEECC
T ss_pred eEEEEEECCCC------CCceEeeccccceeeeeecCCCCEEECCCCCCCEEeCCCCCCChhHeEEEECCCCcEEEEECC
Confidence 57888887654 566666544 8999994 7888886 79999999999778888777669
Q ss_pred CCcEEEeeCCcccccccccccccccCCccccCCCC
Q 006675 68 TNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (636)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (636)
+|...|+. +++..++.+.+.+||+|.+=.+.
T Consensus 78 ~NGT~vNg----~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 78 TNGTWLNG----QKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp SSCCEETT----EECCTTCCEECCTTCEEEECTTS
T ss_pred cCCeEECC----EEcCCCCeEEcCCCCEEEECCCc
Confidence 99998862 56777778889999999997654
No 10
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=96.99 E-value=0.0012 Score=61.81 Aligned_cols=96 Identities=16% Similarity=0.199 Sum_probs=73.8
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC---Cccccccc---------cccceeEEEecCCc----ceEEEeecC
Q 006675 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKR---------LSRKHITLTASADG----SASLVVDGT 68 (636)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~~----~~~~~~~~~ 68 (636)
..|.|++++.. .+.|+|..+..+|||+ +|++.|.. +||+|.+|....++ .+.|.=-.+
T Consensus 29 ~w~~L~~~~~~------~~~i~L~~~~~~IGR~~~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~~i~D~St 102 (149)
T 1gxc_A 29 PWARLWALQDG------FANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 102 (149)
T ss_dssp CCEEEEECSTT------CCCEEECSSEEEEESSTTCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEEEEEECCS
T ss_pred eeEEEEEcCCC------CceEEECCCCEEecCCCCCCEEECCccccccccCCcCchhheEEEEECCCCceeEEEEEECCC
Confidence 47899998753 4569999999999995 68888885 99999999988764 454544578
Q ss_pred CcEEEeeCCcccccccccccccccCCccccCCCC-ccceeeee
Q 006675 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH-HFFKYVTL 110 (636)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~ 110 (636)
|-..|+ -+++.++.++.+.+||+|.|-... ..|.|.++
T Consensus 103 NGT~VN----g~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 103 NGTFVN----TELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp SCEEET----TEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred CCeEEC----CEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 888775 247777888899999999997754 34666653
No 11
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=96.83 E-value=0.0014 Score=60.32 Aligned_cols=98 Identities=20% Similarity=0.298 Sum_probs=72.4
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecC-CcceEEEe-ecCCcEEEeeCCc
Q 006675 4 TKIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASA-DGSASLVV-DGTNPVVVKSGDQ 78 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 78 (636)
.++|.|+-+.... ..--.++|..|..+||| ++|++.|..+||.|..|.... +|...|.= ..+|...|+ ++
T Consensus 22 ~p~g~L~v~~g~~---~~g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vN--g~ 96 (132)
T 3va4_A 22 EPIGQLRLFSGTH---GPERDFPLYLGKNVVGRSPDCSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIV--KP 96 (132)
T ss_dssp CCSEEEEECCBTT---BSCEEEEECSEEEEEESSTTSSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEET--TT
T ss_pred CCcEEEEEEeCCC---CCceEEEECCCCEEEccCCCCCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEEC--CE
Confidence 4678888876544 12345888999999999 469999999999999999874 55554443 368998884 44
Q ss_pred ccccccccccccccCCccccCCCCccceee
Q 006675 79 RKKLSSNEHVSIADGDIIELIPGHHFFKYV 108 (636)
Q Consensus 79 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (636)
|-+|.++..+.+.+||+|.+ |..-+.|.
T Consensus 97 ~i~l~~~~~~~L~~GD~I~l--G~~~l~f~ 124 (132)
T 3va4_A 97 PRVLPPGVSHRLRDQELILF--ADFPCQYH 124 (132)
T ss_dssp TEEECTTCCEECCTTCEEEE--TTEEEEEE
T ss_pred EcccCCCCEEECCCCCEEEE--CCEEEEEE
Confidence 44588888889999999988 44444443
No 12
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=96.63 E-value=0.0013 Score=61.67 Aligned_cols=96 Identities=21% Similarity=0.317 Sum_probs=72.4
Q ss_pred cceeeEeeCCCCccCCCCCCcccCCC-CCccccC---CCccccccccccceeEEEec-------CCcceEEEeecCCcEE
Q 006675 4 TKIGYLVPLDNNLREDNSLPKLPLSQ-GPNVIGR---TNIPVSDKRLSRKHITLTAS-------ADGSASLVVDGTNPVV 72 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 72 (636)
...|.|+.++++. -..++|.. +..+||| ++|++.|..+||+|.+|... .+|.+.|.=-.+|-+.
T Consensus 16 ~~~~~L~~~~~~~-----g~~~~l~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~DlS~NGT~ 90 (151)
T 2jqj_A 16 TCLGHLVNLIPGK-----EQKVEITNRNVTTIGRSRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDKSRNGTF 90 (151)
T ss_dssp CEEEEEEEEETTE-----EEEEEEECCSCEEEESSTTSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEECCSSCEE
T ss_pred CceEEEEEecCCC-----ceEEEEcCCCeEEeCCCCCCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEECCCCCeE
Confidence 3578999887653 34678875 8999999 57999999999999999983 4566666655899998
Q ss_pred EeeCCcccccccccccccccCCccccCCC-Cccceeee
Q 006675 73 VKSGDQRKKLSSNEHVSIADGDIIELIPG-HHFFKYVT 109 (636)
Q Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~ 109 (636)
|+ | +++..+ .+.+.+||+|.+=.. .+.|.+..
T Consensus 91 VN--g--~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~ 123 (151)
T 2jqj_A 91 IN--G--NRLVKK-DYILKNGDRIVFGKSCSFLFKYAS 123 (151)
T ss_dssp ET--T--EECCSS-CEEECSSEEEEETTTEEEEEEECS
T ss_pred EC--C--EEcCCC-ceECCCCCEEEECCCcEEEEEEcC
Confidence 86 2 345555 678999999999763 45565444
No 13
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=96.24 E-value=0.011 Score=53.01 Aligned_cols=98 Identities=23% Similarity=0.356 Sum_probs=71.4
Q ss_pred cceeeEeeCCCCccCC-CCCCcccCCCCCccccC-----CCccccccccccceeEEEecCCcceEEEeec-CCcEEEeeC
Q 006675 4 TKIGYLVPLDNNLRED-NSLPKLPLSQGPNVIGR-----TNIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSG 76 (636)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 76 (636)
....|||-|+.+-... ...-.++|..|..+||| ++|++.|..+||.|..|+.. +|.+.|.-.| +|.+.|+
T Consensus 9 ~~~p~Lv~l~~d~~~s~~~~~~~~L~~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~-~~~~~l~dl~S~ngt~vN-- 85 (120)
T 1wln_A 9 EKLPYLVELSPDGSDSRDKPKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM-DGVVTVTPRSMDAETYVD-- 85 (120)
T ss_dssp GGCCEEEEECSSSCCCSSCCCEEECCSEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES-SSCEEEEESCSSSCEEET--
T ss_pred CCcCEEEEeCCChhhccCccEEEEECCCCEEECCCCCCCCcEEECCCCCchhheEEEEc-CCEEEEEECCCCCCEEEC--
Confidence 4567899888653221 11346889999999996 38999999999999999986 6777777776 8999885
Q ss_pred CcccccccccccccccCCccccCCCCccceeee
Q 006675 77 DQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
++| +. +.+.+.+||.|.+=.. +.|.|..
T Consensus 86 g~~--i~--~~~~L~~GD~I~iG~~-~~~~f~~ 113 (120)
T 1wln_A 86 GQR--IS--ETTMLQSGMRLQFGTS-HVFKFVD 113 (120)
T ss_dssp SCB--CS--SCEEECTTCEEEETTT-EEEEEEC
T ss_pred CEE--cC--CCEECCCCCEEEECCc-eEEEEEC
Confidence 332 32 3457899999988542 5676654
No 14
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=96.23 E-value=0.0087 Score=56.50 Aligned_cols=96 Identities=24% Similarity=0.337 Sum_probs=69.0
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------cceEEEee
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVD 66 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~ 66 (636)
.-.|.|+..... -..|+|.+|. .+|||+ +|++.|..+||.|..|.... + |...|.=-
T Consensus 5 ~l~L~p~~~~~~----~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl 80 (158)
T 1dmz_A 5 FLTLKPLPDSII----QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT 80 (158)
T ss_dssp CEEEEECTTSSC----CCCEEETTSCSCEEEESSTTSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC
T ss_pred EEEEEeCCCCcc----ceEEEEcCCCceEEECCCCCCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC
Confidence 345777776443 2578888887 999997 68999999999999998754 1 33434333
Q ss_pred cCCcEEEeeCCcccccccccccccccCCcccc---CCCCccceeee
Q 006675 67 GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL---IPGHHFFKYVT 109 (636)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 109 (636)
.+|-..|+ -+++..+..+.+.+||+|.+ ..|...+.|..
T Consensus 81 StNGT~VN----g~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 122 (158)
T 1dmz_A 81 GTNVSYLN----NNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 122 (158)
T ss_dssp STTCCEET----TEECCSSEEEECCSSCCEESCCCTTTTCCCCEEE
T ss_pred CcCCeEEC----CEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEE
Confidence 78888775 24677777788999999999 44655555554
No 15
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=96.19 E-value=0.01 Score=54.10 Aligned_cols=94 Identities=20% Similarity=0.328 Sum_probs=70.2
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCCccccC---CCccccccccccceeEEEecCCcceEEEeecCCcEEEeeCCccccc
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVKSGDQRKKL 82 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (636)
.-|||=|+++..... .=-.+|.+| .+||| ++|++.|..+||+|-.++...+|.+.|.-.++|.+-|+. +| +
T Consensus 26 ~PhLvnLn~Dp~~s~-~l~y~L~~~-t~IGR~~~~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~~ngt~VNG--~~--V 99 (124)
T 3fm8_A 26 KCFLVNLNADPALNE-LLVYYLKEH-TLIGSANSQDIQLCGMGILPEHCIIDITSEGQVMLTPQKNTRTFVNG--SS--V 99 (124)
T ss_dssp -CEEEETTCCTTSSC-CCEEECCSE-EEEESSTTCSEECCSTTCCSSCEEEEECTTSCEEEEECTTCCEEETT--EE--C
T ss_pred ccEEEEeCCCCccCc-eEEEECCCC-eEECCCCCCCEEECCCCeecceEEEEECCCCeEEEEECCCCCEEECC--EE--c
Confidence 458999988764333 334566676 89999 579999999999999999877899989888999988853 32 2
Q ss_pred ccccccccccCCccccCCCCccceee
Q 006675 83 SSNEHVSIADGDIIELIPGHHFFKYV 108 (636)
Q Consensus 83 ~~~~~~~i~~~~~~~~~~~~~~~~~~ 108 (636)
. +.+.+.+||.|.+=. .++|+|.
T Consensus 100 ~--~~~~L~~GD~I~lG~-~~~FrFn 122 (124)
T 3fm8_A 100 S--SPIQLHHGDRILWGN-NHFFRLN 122 (124)
T ss_dssp C--SCEEECTTCEEEETT-TEEEEEE
T ss_pred C--CcEECCCCCEEEECC-CeEEEEE
Confidence 2 346688899888754 4566654
No 16
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=96.15 E-value=0.0086 Score=55.16 Aligned_cols=79 Identities=15% Similarity=0.216 Sum_probs=60.3
Q ss_pred CcccCCCCC-ccccC----CCccccccccccceeEEEecC-CcceEEEe-ecCCcEEEeeCCcccccccccccccccCCc
Q 006675 23 PKLPLSQGP-NVIGR----TNIPVSDKRLSRKHITLTASA-DGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (636)
Q Consensus 23 ~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (636)
..++|..+. .+||| ++|++.|..+||+|.+|.... +|.+.|.= ..+|-..|+. +++.++..+.+.+||+
T Consensus 47 ~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~vNg----~~l~~~~~~~L~~gd~ 122 (140)
T 2jpe_A 47 EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGH----IRLEPHKPQQIPIDST 122 (140)
T ss_dssp EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEESSS----CEECSSSCCEECTTCC
T ss_pred eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeEECC----EECCCCccEECCCCCE
Confidence 467888875 99999 468999999999999999887 45664543 3688888752 4577777888999999
Q ss_pred cccCCCCccc
Q 006675 96 IELIPGHHFF 105 (636)
Q Consensus 96 ~~~~~~~~~~ 105 (636)
|.+=.....|
T Consensus 123 i~~G~~~~~f 132 (140)
T 2jpe_A 123 VSFGASTRAY 132 (140)
T ss_dssp BBCSSCCCCB
T ss_pred EEECCceEEE
Confidence 9995444334
No 17
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=95.99 E-value=0.02 Score=52.64 Aligned_cols=85 Identities=24% Similarity=0.244 Sum_probs=65.4
Q ss_pred eeeEeeCCCCccCCCCCCcccCC-CCCccccCC---Cccccccc----cccceeEEEecCCcceEEEee-cCCcEEEeeC
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLS-QGPNVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVVD-GTNPVVVKSG 76 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 76 (636)
.-+|+...++. ..++|. .+.-+|||+ +|.+.|.. +||.|.+|....+|.+.|.=- .+|...|+.
T Consensus 9 ~w~l~~~G~~~------~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vNg- 81 (138)
T 2pie_A 9 SWCLRRVGMSA------GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLNR- 81 (138)
T ss_dssp EEEEEETTCSS------CBEEECTTCCEEEESSSSSSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCSSCEEETT-
T ss_pred cEEEEEeCCCC------CEEEecCCCeEEECCCCCCCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCCCCeEECC-
Confidence 33566655443 367887 456799995 68889988 999999999977887766654 699998863
Q ss_pred CcccccccccccccccCCccccCC
Q 006675 77 DQRKKLSSNEHVSIADGDIIELIP 100 (636)
Q Consensus 77 ~~~~~~~~~~~~~i~~~~~~~~~~ 100 (636)
+++..+..+.+.+||+|.+=.
T Consensus 82 ---~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 82 ---ARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp ---EECCTTCCEECCTTCEEEESC
T ss_pred ---EEcCCCCcEECCCCCEEEECC
Confidence 567777778899999999966
No 18
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=95.95 E-value=0.0065 Score=54.22 Aligned_cols=87 Identities=23% Similarity=0.316 Sum_probs=63.2
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC-ccccCC----CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcc
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLSQGP-NVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQR 79 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 79 (636)
...|+-++.... --.++|..|. -+|||. +|.+.|..+||+|.+|+... |.+.|.=- .+|...|+ +
T Consensus 12 ~l~L~v~~g~~~----g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGT~vn--g-- 82 (118)
T 1uht_A 12 SLRLVFVKGPRE----GDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-GNWVIQDLGSSNGTLLN--S-- 82 (118)
T ss_dssp EEEEEESSSTTT----TCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-SSEEEECCCCSSCCEES--S--
T ss_pred eEEEEEEeCCCC----CcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEEC-CEEEEEECCCCCCeEEC--C--
Confidence 445565553321 2367888774 689997 78999999999999999864 55555555 48998885 2
Q ss_pred cccccccccccccCCccccCCC
Q 006675 80 KKLSSNEHVSIADGDIIELIPG 101 (636)
Q Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~ 101 (636)
+++...+.+.+.+||+|.+=..
T Consensus 83 ~~l~~~~~~~L~~gd~i~lG~~ 104 (118)
T 1uht_A 83 NALDPETSVNLGDGDVIKLGEY 104 (118)
T ss_dssp SBCCTTCEEECCTTEEEEETTT
T ss_pred EECCCCCeEEcCCCCEEEECCe
Confidence 3577777888999999998544
No 19
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=95.90 E-value=0.0076 Score=53.64 Aligned_cols=78 Identities=23% Similarity=0.370 Sum_probs=59.0
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccccccccccccCCccc
Q 006675 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (636)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (636)
-..++|..+..+|||. +|++.|..+||+|.+|... +|.+.|.=- .+|.+.|+ ++ ++. .+.+.+||+|.
T Consensus 23 g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~--~i~---~~~L~~gd~i~ 94 (115)
T 2xt9_B 23 GSRFLLDQPTTSAGRHPDSDIFLDDVTVSRRHAEFRLE-GGEFQVVDVGSLNGTYVN--RE--PVD---SAVLANGDEVQ 94 (115)
T ss_dssp TCEEEECSSEEEEESSTTSSEECCSTTSCSSCEEEEEE-TTEEEEEECSCSSCEEET--TE--ECS---EEEECTTCEEE
T ss_pred CeEEEECCCCEEECCCCCCCEEeCCcccChhheEEEEE-CCEEEEEECCCCCCeEEC--CE--Ecc---eEECCCCCEEE
Confidence 3568888999999996 7999999999999999997 555555544 58999885 33 233 46799999999
Q ss_pred cCCCCccceeee
Q 006675 98 LIPGHHFFKYVT 109 (636)
Q Consensus 98 ~~~~~~~~~~~~ 109 (636)
+ |..-+.|..
T Consensus 95 i--G~~~l~~~~ 104 (115)
T 2xt9_B 95 I--GKFRLVFLT 104 (115)
T ss_dssp E--TTEEEEEEC
T ss_pred E--CCEEEEEEe
Confidence 8 445555444
No 20
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=95.71 E-value=0.01 Score=51.29 Aligned_cols=77 Identities=29% Similarity=0.396 Sum_probs=57.4
Q ss_pred CCCcccCCCCCccccC---CCccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccccccccccccCCcc
Q 006675 21 SLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (636)
Q Consensus 21 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (636)
+--.++|..|..+||| ++|.+.|..+||.|..|... +|...|.-- .+|.+.|+ ++| +. ++.+.+||.|
T Consensus 14 ~g~~~~l~~~~~~IGR~~~~di~l~d~~vSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vn--g~~--i~---~~~L~~gd~i 85 (100)
T 3po8_A 14 SGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWD-GQVALLADLNSTNGTTVN--NAP--VQ---EWQLADGDVI 85 (100)
T ss_dssp SCCEEECCSEEEEEESSTTCSEECCCTTSCSSCEEEEEC-SSCEEEEECSCSSCCEET--TEE--CS---EEECCTTCEE
T ss_pred CCcEEEECCCCEEEeCCCCCCEECCCCCcChhhCEEEEe-CCEEEEEECCCCCCEEEC--CEE--Cc---eEECCCCCEE
Confidence 3557899999999999 57999999999999999986 555555544 48998885 332 32 4679999999
Q ss_pred ccCCCCccc
Q 006675 97 ELIPGHHFF 105 (636)
Q Consensus 97 ~~~~~~~~~ 105 (636)
.+=.....|
T Consensus 86 ~iG~~~~~~ 94 (100)
T 3po8_A 86 RLGHSEIIV 94 (100)
T ss_dssp EETTEEEEE
T ss_pred EECCEEEEE
Confidence 885543333
No 21
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=95.69 E-value=0.016 Score=53.78 Aligned_cols=74 Identities=28% Similarity=0.356 Sum_probs=58.8
Q ss_pred CcccCCCCC-ccccCC---Cccccccc----cccceeEEEecCCcceEEEe-ecCCcEEEeeCCcccccccccccccccC
Q 006675 23 PKLPLSQGP-NVIGRT---NIPVSDKR----LSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADG 93 (636)
Q Consensus 23 ~~~~~~~~~-~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (636)
..++|..+. -+|||+ +|.+.|.. +||+|..|+...+|...|.= ..+|-..|+ .+++..++.+.+.+|
T Consensus 28 ~~~~l~~~~~~~IGR~~~~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~NGT~vN----g~~i~~~~~~~L~~G 103 (145)
T 2csw_A 28 GWLLLEDGCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSLNGVWLN----RARLEPLRVYSIHQG 103 (145)
T ss_dssp CBEECCTTCCEEEESSTTSSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCSSCEEES----SCBCCBTCCEECCSS
T ss_pred CeEEeCCCCcEEECCCCCCCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCCCCeEEC----CEECCCCccEECCCC
Confidence 367776665 489995 68888887 99999999997788775554 478999886 235777778889999
Q ss_pred CccccCC
Q 006675 94 DIIELIP 100 (636)
Q Consensus 94 ~~~~~~~ 100 (636)
|+|.+=.
T Consensus 104 D~I~iG~ 110 (145)
T 2csw_A 104 DYIQLGV 110 (145)
T ss_dssp CCEEESC
T ss_pred CEEEECC
Confidence 9999976
No 22
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=95.66 E-value=0.01 Score=53.73 Aligned_cols=93 Identities=26% Similarity=0.384 Sum_probs=67.2
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEeec-CCcEEEeeCCccc
Q 006675 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDG-TNPVVVKSGDQRK 80 (636)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 80 (636)
..+.|+-+..+... -..++|..+..+|||+ +|.+.|..+||+|..|... +|.+.|.--| +|.+.|+ ++|
T Consensus 11 ~~~~L~v~~~~~~~---g~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~-~~~~~l~Dl~S~nGt~vN--g~~- 83 (128)
T 1r21_A 11 PTRRLVTIKRSGVD---GPHFPLSLSTCLFGRGIECDIRIQLPVVSKQHCKIEIH-EQEAILHNFSSTNPTQVN--GSV- 83 (128)
T ss_dssp CCEEEEEEEETTEE---EEEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEEC-SSCEEECCCCSSSCCEET--TEE-
T ss_pred CceEEEEEeCCCCC---ceEEEECCCCEEECCCCCCCEEECCCCCChhHEEEEEE-CCEEEEEECCCCCCEEEC--CEE-
Confidence 35677776643221 2358888899999995 7999999999999999986 4666566554 8998884 333
Q ss_pred ccccccccccccCCccccCCCCccceeee
Q 006675 81 KLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 81 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
+. ..+.+.+||+|.+ |..-|.|..
T Consensus 84 -i~--~~~~L~~Gd~i~i--G~~~~~~~~ 107 (128)
T 1r21_A 84 -ID--EPVRLKHGDVITI--IDRSFRYEN 107 (128)
T ss_dssp -CS--SCEECCTTEEEEC--SSCEEEEEE
T ss_pred -CC--CcEEcCCCCEEEE--CCEEEEEEe
Confidence 33 3567999999999 556666555
No 23
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=95.52 E-value=0.011 Score=56.05 Aligned_cols=88 Identities=22% Similarity=0.293 Sum_probs=65.5
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCC-----------CccccCC---Ccccccc-ccccceeEEEecCCcceEEEeecCCc
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLSQG-----------PNVIGRT---NIPVSDK-RLSRKHITLTASADGSASLVVDGTNP 70 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (636)
++.|+.+....+ ...++|..+ ..+|||+ +|++.|. ++||+|..|....+|...|.=-.+|.
T Consensus 33 ~~~L~v~~G~~~----g~~~~l~~~~v~~~~~~~~~~~~IGR~~~~di~l~d~~~vSr~Ha~I~~~~~g~~~l~DlS~NG 108 (164)
T 1g3g_A 33 VCRVICTTGQIP----IRDLSADISQVLKEKRSIKKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDISTNG 108 (164)
T ss_dssp CEEEECSSSSSC----CEEECCCHHHHHHCSSSCCEEEEEESSSSSSEECCCCTTTTSSCEEEEECSTTCEEEEECCSSC
T ss_pred cEEEEEecCCCC----CeEEEeccccccccccccCCcEEECCCCCCCEEeCCcCCcChhHEEEEECCCCCEEEEECCCCC
Confidence 566776653322 224555544 7899994 6888886 79999999999778877776668999
Q ss_pred EEEeeCCcccccccccccccccCCccccCCC
Q 006675 71 VVVKSGDQRKKLSSNEHVSIADGDIIELIPG 101 (636)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 101 (636)
..|+. +++..+..+.+.+||+|.+=..
T Consensus 109 T~vNg----~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 109 TWLNG----QKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEETT----EEECTTEEEECCTTCEEEESCS
T ss_pred eEECC----EEcCCCCceEcCCCCEEEECCC
Confidence 98863 5677767788999999999765
No 24
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=95.49 E-value=0.012 Score=54.65 Aligned_cols=78 Identities=22% Similarity=0.339 Sum_probs=58.2
Q ss_pred CCcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccccccccccccCCccc
Q 006675 22 LPKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIE 97 (636)
Q Consensus 22 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (636)
-..++|..+..+|||. +|.+.|..+||+|..|... +|.+.|.=- .+|.+.|+ ++ ++. .+.+.+||+|.
T Consensus 58 g~~~~L~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~-~~~~~l~DlgS~NGT~VN--g~--~i~---~~~L~~GD~I~ 129 (143)
T 2kb3_A 58 GARFLLDQPTTTAGRHPESDIFLDDVTVSRRHAEFRIN-EGEFEVVDVGSLNGTYVN--RE--PRN---AQVMQTGDEIQ 129 (143)
T ss_dssp TCEEEECSSEEEESSCTTCSBCCCCSSCCSSSEEEEEE-TTEEEEEESCCSSCCEET--TE--ECS---EEECCTTEEEE
T ss_pred CeEEEeCCCCeeccCCCCCCEEeCCCCcChhhEEEEEE-CCEEEEEECCCcCCeEEC--CE--Ecc---eEECCCCCEEE
Confidence 3467888899999995 7999999999999999995 555655544 48998885 33 333 46799999998
Q ss_pred cCCCCccceeee
Q 006675 98 LIPGHHFFKYVT 109 (636)
Q Consensus 98 ~~~~~~~~~~~~ 109 (636)
+ |..-+.|..
T Consensus 130 i--G~~~l~f~~ 139 (143)
T 2kb3_A 130 I--GKFRLVFLA 139 (143)
T ss_dssp E--TTEEEEEEE
T ss_pred E--CCEEEEEEe
Confidence 8 555555443
No 25
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=95.49 E-value=0.011 Score=55.89 Aligned_cols=72 Identities=31% Similarity=0.444 Sum_probs=54.3
Q ss_pred CCCCcccCCCCCccccC---CCccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccccccccccccCCc
Q 006675 20 NSLPKLPLSQGPNVIGR---TNIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDI 95 (636)
Q Consensus 20 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 95 (636)
++--.++|..+..+||| ++|++.|..+||+|.+|+...+ .+.|.=- .+|.+.|+ ++ ++. ++.+.+||+
T Consensus 75 g~g~~~~L~~~~~~IGR~~~~dI~L~d~~VSr~HA~I~~~~~-~~~l~DlgStNGT~VN--G~--~i~---~~~L~~GD~ 146 (157)
T 3oun_A 75 GSGRTYQLREGSNIIGRGQDAQFRLPDTGVSRRHLEIRWDGQ-VALLADLNSTNGTTVN--NA--PVQ---EWQLADGDV 146 (157)
T ss_dssp TTCCEEECCSEEEEEESSTTCSEECCCTTSCTTCEEEEECSS-CEEEEECSCSSCCEET--TE--ECS---EEECCTTCE
T ss_pred CCCeEEEECCCcEEEEeCCCCCEEeCCCCcChhHEEEEEECC-EEEEEECCCCCCeEEC--CE--ECc---eEECCCCCE
Confidence 34567889999999999 4799999999999999998644 4444443 58999885 32 232 467899999
Q ss_pred cccC
Q 006675 96 IELI 99 (636)
Q Consensus 96 ~~~~ 99 (636)
|.|=
T Consensus 147 I~lG 150 (157)
T 3oun_A 147 IRLG 150 (157)
T ss_dssp EEET
T ss_pred EEEC
Confidence 8874
No 26
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=95.40 E-value=0.02 Score=53.81 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=69.4
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCCc----ceEEEeecCCcEEEee
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASADG----SASLVVDGTNPVVVKS 75 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 75 (636)
.-|||-||++....+- =-..|.+|..+|||. +|++.|..+||+|-.++...++ .+.+....+|.+.|+.
T Consensus 38 ~PhLvnLn~Dp~ls~~-lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ngt~VNG 116 (154)
T 4ejq_A 38 TPHLVNLNEDPLMSEC-LLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVNG 116 (154)
T ss_dssp SCEEEECCCCTTCSSE-EEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCCEEETT
T ss_pred CceEEEecCCcccCce-EEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCceEECC
Confidence 4578888877643322 235788999999994 6999999999999999988765 3445556788888853
Q ss_pred CCcccccccccccccccCCccccCCCCccceeee
Q 006675 76 GDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 76 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
+ ++ .+.+.+.+||.|.+= ..++|.|..
T Consensus 117 --~--~i--~~~~~L~~GD~I~~G-~~~~Frf~~ 143 (154)
T 4ejq_A 117 --K--KV--TEPSILRSGNRIIMG-KSHVFRFNH 143 (154)
T ss_dssp --E--EC--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred --E--Ec--CCceECCCCCEEEEC-CcEEEEEcC
Confidence 2 23 235668899999873 346787776
No 27
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=95.36 E-value=0.025 Score=54.74 Aligned_cols=96 Identities=24% Similarity=0.337 Sum_probs=66.6
Q ss_pred eeeEeeCCCCccCCCCCCcccCCCCC--ccccCC---CccccccccccceeEEEecC--C------------cceEEEee
Q 006675 6 IGYLVPLDNNLREDNSLPKLPLSQGP--NVIGRT---NIPVSDKRLSRKHITLTASA--D------------GSASLVVD 66 (636)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~~~ 66 (636)
...|.|+..... -..|+|..|. .+|||+ +|++.|..+||.|..|+... + |.+.|.=-
T Consensus 29 ~l~L~~~~~~~~----~~~i~L~~~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl 104 (182)
T 1qu5_A 29 FLTLKPLPDSII----QESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT 104 (182)
T ss_dssp CEEECCCTTSSS----CSCCCBTTCCSSEEESSSTTSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC
T ss_pred EEEEEeCCCCCc----ceEEEEcCCCceEEECCCCCCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC
Confidence 344555554322 2578888887 899997 69999999999999999764 1 33433323
Q ss_pred cCCcEEEeeCCcccccccccccccccCCcccc---CCCCccceeee
Q 006675 67 GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL---IPGHHFFKYVT 109 (636)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~ 109 (636)
.+|-..|+ -+++..+..+.+.+||+|.+ ..|...+.|..
T Consensus 105 StNGT~VN----g~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~ 146 (182)
T 1qu5_A 105 GTNVSYLN----NNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKV 146 (182)
T ss_dssp SSSCCEET----TEECCSSEEEECCTTBCCEEEEEGGGTEEEECCE
T ss_pred CcCCeEEC----CEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEE
Confidence 77777775 24566677788999999999 44665554443
No 28
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=95.33 E-value=0.014 Score=51.13 Aligned_cols=79 Identities=24% Similarity=0.463 Sum_probs=58.7
Q ss_pred CcccCCCCCc-cccCC----CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccccccccccccCCcc
Q 006675 23 PKLPLSQGPN-VIGRT----NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDII 96 (636)
Q Consensus 23 ~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (636)
-.++|..|.. +|||+ +|++.|..+||+|.+|....+|...|.=- .+|.+.|+ ++ ++.. .+.+.+||+|
T Consensus 17 ~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~vn--g~--~i~~--~~~L~~Gd~i 90 (106)
T 3gqs_A 17 AEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVE--GR--KIEH--QSTLSANQVV 90 (106)
T ss_dssp CEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCEET--TE--ECSS--EEECCTTCCE
T ss_pred EEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeEEC--CE--ECCC--CeECCCCCEE
Confidence 4688888876 79996 58999999999999999988887766554 68888884 22 2332 3568999999
Q ss_pred ccCCCCccceeee
Q 006675 97 ELIPGHHFFKYVT 109 (636)
Q Consensus 97 ~~~~~~~~~~~~~ 109 (636)
.+ |..-+.+..
T Consensus 91 ~~--G~~~~~~~~ 101 (106)
T 3gqs_A 91 AL--GTTLFLLVD 101 (106)
T ss_dssp EE--TTEEEEEEE
T ss_pred EE--CCEEEEEEc
Confidence 88 455555443
No 29
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=94.87 E-value=0.021 Score=52.47 Aligned_cols=80 Identities=30% Similarity=0.410 Sum_probs=59.9
Q ss_pred cccCCCC-----CccccCC---CccccccccccceeEEEecCCc-ceEEEeec-CCcEEEeeCCcccccc--------cc
Q 006675 24 KLPLSQG-----PNVIGRT---NIPVSDKRLSRKHITLTASADG-SASLVVDG-TNPVVVKSGDQRKKLS--------SN 85 (636)
Q Consensus 24 ~~~~~~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~--------~~ 85 (636)
.++|..| ..+|||+ +|.+.|..+||+|.+|+...++ .+.|.=-| +|-..|+. +++. ++
T Consensus 21 ~~~l~~~~~~~~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~NGT~vNg----~~i~~~~~~~~~~~ 96 (139)
T 1mzk_A 21 QHAVNSTSSSKLPVKLGRVSPSDLALKDSEVSGKHAQITWNSTKFKWELVDMGSLNGTLVNS----HSISHPDLGSRKWG 96 (139)
T ss_dssp EEEECTTCSTTCSEEEESSSSCSEECCCTTSSSEEEEEEEETTTTEEEEEETTCSSCCEETT----EESSCCCTTTCCCC
T ss_pred EEEecCCCCccceEEeeCCCCCCEEeCCCCCChHHcEEEEECCCCEEEEEECCCCCCEEECC----EECcCcccccccCC
Confidence 5677776 5699994 7999999999999999999875 56666554 89988852 2233 35
Q ss_pred cccccccCCccccCCCCccceeee
Q 006675 86 EHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 86 ~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
+.+.+.+||+|.+ |..-+.+..
T Consensus 97 ~~~~L~~GD~I~i--G~~~~~~~~ 118 (139)
T 1mzk_A 97 NPVELASDDIITL--GTTTKVYVR 118 (139)
T ss_dssp CCEECCTTEEEEC--SSSCEEEEE
T ss_pred ceEECCCCCEEEE--CCEEEEEEE
Confidence 6778999999998 555555444
No 30
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=94.86 E-value=0.028 Score=53.39 Aligned_cols=77 Identities=22% Similarity=0.376 Sum_probs=57.5
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEee-cCCcEEEeeCCcccccccccccccccCCcccc
Q 006675 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVVD-GTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (636)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 98 (636)
..++|..+..+|||+ +|++.|..+||+|..|... +|.+.|.=- .+|-+.|+ ++| +. .+.+.+||+|.+
T Consensus 68 ~~~~L~~~~~~IGR~~~~di~l~d~~VSr~HA~I~~~-~~~~~l~DlgS~NGT~VN--g~~--i~---~~~L~~GD~I~i 139 (162)
T 2kfu_A 68 SRFLLDQAITSAGRHPDSDIFLDDVTVSRRHAEFRLE-NNEFNVVDVGSLNGTYVN--REP--VD---SAVLANGDEVQI 139 (162)
T ss_dssp CEEETTSSEEEEESCSSSSEESTTTSSSSCSEEEEEE-TTEEEEECCCCSSCEEET--TBC--CS---EEECCSSCEEEE
T ss_pred eEEEECCCCEEECCCCCCCEEECCCCcChhhEEEEEE-CCEEEEEECCCCCCeEEC--CEE--cc---eEECCCCCEEEE
Confidence 467888889999996 7999999999999999986 555555544 48999885 332 33 467999999998
Q ss_pred CCCCccceeee
Q 006675 99 IPGHHFFKYVT 109 (636)
Q Consensus 99 ~~~~~~~~~~~ 109 (636)
|..-+.|..
T Consensus 140 --G~~~l~f~~ 148 (162)
T 2kfu_A 140 --GKFRLVFLT 148 (162)
T ss_dssp --TTEEEEEEC
T ss_pred --CCEEEEEEe
Confidence 445554443
No 31
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=94.81 E-value=0.034 Score=50.77 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=54.3
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecC--Ccc--eEEEee------cCCcEEEeeCCcccccccccccc
Q 006675 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASA--DGS--ASLVVD------GTNPVVVKSGDQRKKLSSNEHVS 89 (636)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 89 (636)
-.++|..+..+|||. +|++.|..+||+|.+|.... ||. ..|.=- .+|.+.|+ ++| +.. +.
T Consensus 23 ~~~~l~~~~~~IGR~~~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vN--g~~--i~~---~~ 95 (131)
T 3hx1_A 23 REVLLTETFYTIGRSPRADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMIN--GKK--VQE---HI 95 (131)
T ss_dssp EEEEECSSEEEEESSTTSSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEET--TEE--ESE---EE
T ss_pred EEEEECCCCEEECCCCCCCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEEC--CEE--eEe---EE
Confidence 468888899999994 89999999999999998763 453 433332 68999884 332 332 77
Q ss_pred cccCCccccCCCCccc
Q 006675 90 IADGDIIELIPGHHFF 105 (636)
Q Consensus 90 i~~~~~~~~~~~~~~~ 105 (636)
+.+||+|.+=.....|
T Consensus 96 L~~GD~I~iG~~~~~~ 111 (131)
T 3hx1_A 96 IQTGDEIVMGPQVSVR 111 (131)
T ss_dssp CCTTCEEECSTTCEEE
T ss_pred CCCCCEEEECCEEEEE
Confidence 9999999986554444
No 32
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.045 Score=51.74 Aligned_cols=89 Identities=17% Similarity=0.283 Sum_probs=62.3
Q ss_pred EeeCCCCccCCCCCCcccCCCCCc-cccCC------------------CccccccccccceeEEEecCCc-ceEEEe---
Q 006675 9 LVPLDNNLREDNSLPKLPLSQGPN-VIGRT------------------NIPVSDKRLSRKHITLTASADG-SASLVV--- 65 (636)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--- 65 (636)
|+.++.+.+.+..+..+.|..+.- +|||+ +|++.|..+||.|..|....++ ...+.+
T Consensus 34 l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~~~~~~l~Dl 113 (158)
T 3els_A 34 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 113 (158)
T ss_dssp EEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCccCcccceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCCeeEEEEEeC
Confidence 555655554444677899988764 78995 6777889999999999987665 111222
Q ss_pred ecCCcEEEeeCCcccccccccccccccCCccccCCC
Q 006675 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPG 101 (636)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 101 (636)
..+|-..|+. +++..+..+.+.+||+|.+=..
T Consensus 114 ~StNGT~VNg----~ri~~~~~~~L~~GD~I~~G~s 145 (158)
T 3els_A 114 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEF 145 (158)
T ss_dssp SCSSCCEETT----EECCTTCCEECCTTEEEESSSC
T ss_pred CCCCccEECC----EEcCCCceEEcCCCCEEEECCC
Confidence 2578887752 4566666677999999988543
No 33
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.03 E-value=0.066 Score=57.03 Aligned_cols=78 Identities=24% Similarity=0.429 Sum_probs=58.4
Q ss_pred CcccCCCCCccccCC---CccccccccccceeEEEecCCcceEEEe-ecCCcEEEeeCCcccccccccccccccCCcccc
Q 006675 23 PKLPLSQGPNVIGRT---NIPVSDKRLSRKHITLTASADGSASLVV-DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIEL 98 (636)
Q Consensus 23 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 98 (636)
..++|..+.++|||+ +|++.|..+||+|..|.... |.+.|.= ..+|.+.|+ |+ ++. ..+.+.+||+|.+
T Consensus 299 ~~~~l~~~~~~iGR~~~~di~l~~~~vSr~Ha~i~~~~-~~~~l~Dl~S~nGt~vn--g~--~i~--~~~~L~~gd~i~~ 371 (388)
T 2ff4_A 299 RGYPLQAAATRIGRLHDNDIVLDSANVSRHHAVIVDTG-TNYVINDLRSSNGVHVQ--HE--RIR--SAVTLNDGDHIRI 371 (388)
T ss_dssp CEEECCSSEEEEESSTTSSEECCCTTSCTTCEEEEECS-SCEEEEECSCSSCCEET--TE--ECS--SEEEECTTCEEEE
T ss_pred cEEEECCCCEEEecCCCCeEEECCCccChhHeEEEEEC-CEEEEEECCCCCCeEEC--CE--ECC--CceECCCCCEEEE
Confidence 468899999999995 79999999999999999864 4454444 358999885 33 332 4677999999998
Q ss_pred CCCCccceeee
Q 006675 99 IPGHHFFKYVT 109 (636)
Q Consensus 99 ~~~~~~~~~~~ 109 (636)
= ..-+.+..
T Consensus 372 G--~~~~~~~~ 380 (388)
T 2ff4_A 372 C--DHEFTFQI 380 (388)
T ss_dssp T--TEEEEEEC
T ss_pred C--CEEEEEEe
Confidence 4 45554443
No 34
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=92.84 E-value=0.093 Score=55.86 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=57.0
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccC---CCcccccc---------ccccceeEEEecC--Cc--ceEEEeecC
Q 006675 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGR---TNIPVSDK---------RLSRKHITLTASA--DG--SASLVVDGT 68 (636)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---------~~~~~~~~~~~~~--~~--~~~~~~~~~ 68 (636)
..|.|++++.+.. .|+|.++.++||| .++++.|. ++||+|..|.... ++ .+.|.--.+
T Consensus 9 ~~g~l~~~~~~~~------~~~l~~~~~~iGR~~~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~~i~D~S~ 82 (419)
T 3i6u_A 9 PWARLWALQDGFA------NLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIAYIEDHSG 82 (419)
T ss_dssp CSEEEEECSSSSC------CEEECSSEEEEESSTTSSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECCEEEECCS
T ss_pred CceEeeecCCCCC------ceEecCCCEEecCCCccCEEECCcccccccccccccccceEEEEEcCCCCceEEEEEECCc
Confidence 4799999988653 7899999999999 67888885 4599999996542 22 244444566
Q ss_pred CcEEEeeCCcccccccccccccccCCccccCC
Q 006675 69 NPVVVKSGDQRKKLSSNEHVSIADGDIIELIP 100 (636)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 100 (636)
|...|+. .++....+..+.++|.+.+-.
T Consensus 83 nGt~vn~----~~~~~~~~~~l~~~d~i~~~~ 110 (419)
T 3i6u_A 83 NGTFVNT----ELVGKGKRRPLNNNSEIALSL 110 (419)
T ss_dssp SCEEETT----EECCTTCEEECCTTEEEEESS
T ss_pred CCceECc----ccccCCCcccCCCCCEeeeec
Confidence 7777643 222233333455555555543
No 35
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=92.47 E-value=0.1 Score=47.61 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=53.8
Q ss_pred CCcccCCCCC-ccccC---CCccccccccccceeEEEec----------CCcceEEE-eecCCcEEEeeCCccccccccc
Q 006675 22 LPKLPLSQGP-NVIGR---TNIPVSDKRLSRKHITLTAS----------ADGSASLV-VDGTNPVVVKSGDQRKKLSSNE 86 (636)
Q Consensus 22 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 86 (636)
+..++|.+.+ =+||| ++|++.|..+||+|-.|.-. .++...|. ..-+|-..|+ + +++.++.
T Consensus 32 ~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vN--g--~ri~~~~ 107 (130)
T 4h87_A 32 LGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLN--K--TRIPPRT 107 (130)
T ss_dssp EEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEET--T--EECCTTC
T ss_pred eeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEEC--C--EECCCCc
Confidence 4467776655 47999 57999999999999999531 12222221 1246766664 2 4677777
Q ss_pred ccccccCCccccCCCCccceeee
Q 006675 87 HVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 87 ~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
...+.+||+|.+ |..-..|+.
T Consensus 108 ~~~L~~GD~I~~--G~str~yvl 128 (130)
T 4h87_A 108 YCRVHVGHVVRF--GGSTRLFIL 128 (130)
T ss_dssp CEECCTTCEEEE--TTCSEEEEE
T ss_pred eeECCCCCEEEE--CCceEEEEE
Confidence 778999999988 444444444
No 36
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=90.61 E-value=0.48 Score=45.74 Aligned_cols=97 Identities=20% Similarity=0.276 Sum_probs=70.7
Q ss_pred ceeeEeeCCCCccCCCCCCcccCCCCCccccCC------CccccccccccceeEEEecCC----cceEEEeecCCcEEEe
Q 006675 5 KIGYLVPLDNNLREDNSLPKLPLSQGPNVIGRT------NIPVSDKRLSRKHITLTASAD----GSASLVVDGTNPVVVK 74 (636)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 74 (636)
..-|||-||++....+.+ -..|.+|...|||. +|++..-.+++.|-.++...+ |.+.|.....+.+.|+
T Consensus 67 ~~PhLvnLn~Dp~ls~~l-~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~~~a~t~VN 145 (184)
T 4egx_A 67 KTPHLVNLNEDPLMSECL-LYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGADTYVN 145 (184)
T ss_dssp SSCEEEECCCCTTCSSCS-EEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEECTTCCEEET
T ss_pred CCceEEeccCCcccCceE-EEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeCCCCeEEEc
Confidence 456999999887655443 56788999999995 599999999999999998754 4566665556667665
Q ss_pred eCCcccccccccccccccCCccccCCCCccceeee
Q 006675 75 SGDQRKKLSSNEHVSIADGDIIELIPGHHFFKYVT 109 (636)
Q Consensus 75 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 109 (636)
. . .+ .+.+...+||.|-|= .+|+|.|.+
T Consensus 146 G--~--~I--~~~~~L~~GDrI~lG-~~h~Frfn~ 173 (184)
T 4egx_A 146 G--K--KV--TEPSILRSGNRIIMG-KSHVFRFNH 173 (184)
T ss_dssp T--E--EC--CSCEECCTTCEEEET-TTEEEEEEC
T ss_pred C--E--Ec--cccEEcCCCCEEEEC-CCCEEEECC
Confidence 3 2 22 245568888888543 567888876
No 37
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=90.47 E-value=0.29 Score=48.25 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=61.4
Q ss_pred EeeCCCCccCCCCCCcccCCCC-CccccCC------------------CccccccccccceeEEEecCCc-ceEE-Ee--
Q 006675 9 LVPLDNNLREDNSLPKLPLSQG-PNVIGRT------------------NIPVSDKRLSRKHITLTASADG-SASL-VV-- 65 (636)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~-- 65 (636)
|.-++.+.+.+..+..++|.++ .=+|||+ +|++.|..+||.|..|....++ .... ..
T Consensus 81 L~v~k~g~k~~~~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~~~~~~l~DL 160 (205)
T 3elv_A 81 LVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRGILKCYVMDL 160 (205)
T ss_dssp EEEEEGGGCTTCCSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred EEEEeCCCcccccceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCCceeEEEEeC
Confidence 3334333333345778999764 4699995 8899999999999999876544 2112 22
Q ss_pred ecCCcEEEeeCCcccccccccccccccCCccccCCCC
Q 006675 66 DGTNPVVVKSGDQRKKLSSNEHVSIADGDIIELIPGH 102 (636)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 102 (636)
..+|-..|+. +++.+...+.+.+||+|.+=...
T Consensus 161 gStNGTfVNG----~rI~~~~~~~L~~GD~I~fG~s~ 193 (205)
T 3elv_A 161 DSSNGTCLNN----VVIPGARYIELRSGDVLTLSEFE 193 (205)
T ss_dssp SCSSCCEETT----EECCBTSCEECCTTCEEESSSSG
T ss_pred CCCCCCeECC----EECCCCceeECCCCCEEEECCCC
Confidence 3577777752 46777766789999999986544
No 38
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=85.02 E-value=0.72 Score=41.70 Aligned_cols=39 Identities=28% Similarity=0.164 Sum_probs=30.5
Q ss_pred CCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 006675 482 AMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 535 (636)
Q Consensus 482 a~PHiKty~r~~~~~i~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~P 535 (636)
...|.|+++-.. .++++||+|++..+.. .|+|++|++..
T Consensus 91 ~~~H~K~~iiD~----~~~~iGS~N~~~~~~~-----------~n~E~~~~i~~ 129 (155)
T 1byr_A 91 PIQHDKVIIVDN----VTVETGSFNFTKAAET-----------KNSENAVVIWN 129 (155)
T ss_dssp SCCCCCEEEETT----TEEEEESCCBSHHHHH-----------TSCEEEEEEES
T ss_pred ccccceEEEECC----CEEEEECCCCCccccc-----------cCcccEEEEcC
Confidence 468999988643 4899999999987653 38999998843
No 39
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=82.00 E-value=1.3 Score=42.56 Aligned_cols=38 Identities=16% Similarity=0.017 Sum_probs=30.5
Q ss_pred CCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEE
Q 006675 481 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLI 533 (636)
Q Consensus 481 ~a~PHiKty~r~~~~~i~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~ 533 (636)
...+|.|+++-.. .++++||+|+|..|.. .|+|.++++
T Consensus 120 ~~~~H~K~~viD~----~~~~~GS~N~t~~~~~-----------~n~E~~~~i 157 (196)
T 4ggj_A 120 LGYMHHKFAIVDK----KVLITGSLNWTTQAIQ-----------NNRENVLIM 157 (196)
T ss_dssp SSCCCCEEEEETT----TEEEEESCCBCHHHHH-----------HCCEEEEEE
T ss_pred cccccCcEEEEcc----eEEEecCccCChhhhc-----------ccceeEEEE
Confidence 4567999988633 3799999999998874 389999987
No 40
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=79.95 E-value=1.1 Score=49.00 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=33.3
Q ss_pred CCCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006675 480 SRAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 534 (636)
Q Consensus 480 ~~a~PHiKty~r~~~~~i~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~ 534 (636)
.+...|.|+++-.. .|+++||+||...+|.. |+|+||++.
T Consensus 359 ~~~~lHaK~~vvD~----~~~~vGS~N~d~RS~~l-----------N~E~~~~i~ 398 (458)
T 3hsi_A 359 GDNTYHLKGVWVDD----RYILLTGNNLNPRAWRL-----------DAENGLLIY 398 (458)
T ss_dssp TTBEECCCEEEETT----TEEEEECCCCSHHHHHT-----------CEEEEEEEE
T ss_pred CCCceeEEEEEECC----eEEEecCCCCCcchhhh-----------CceeEEEEe
Confidence 46788999988643 49999999999988853 999999985
No 41
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=76.66 E-value=1.4 Score=39.92 Aligned_cols=49 Identities=27% Similarity=0.538 Sum_probs=39.9
Q ss_pred cccCCCCCccccCC----CccccccccccceeEEEecCCcceEEEeecCCcEEEe
Q 006675 24 KLPLSQGPNVIGRT----NIPVSDKRLSRKHITLTASADGSASLVVDGTNPVVVK 74 (636)
Q Consensus 24 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (636)
.++|.+|.=+||.+ +|++.|..+||.|..|....+|.. |. ..+|+..|.
T Consensus 18 ~l~L~~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~~~g~~-L~-~s~ngt~vd 70 (123)
T 4a0e_A 18 EVELPHGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGIR-LT-DSAEPLLQE 70 (123)
T ss_dssp EEEECSEEEEEESCTTTCSEECCCTTSCSSCEEEEEETTEEE-EE-EESSCCEET
T ss_pred EEEcCCCcEEECCCCCCCCEEEeCCCccceeEEEEECCCeEE-EE-eccCCEEEC
Confidence 46777888889985 699999999999999999877765 54 778887664
No 42
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=72.37 E-value=3.1 Score=37.36 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=29.5
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCccccc-cccceEEeec
Q 006675 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 293 (636)
Q Consensus 251 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qD 293 (636)
+.+.+|+|++|. |+-.++|.|+|+...... +.+.++.+.+
T Consensus 89 ~~~~~H~K~~ii---D~~~~~iGS~N~~~~~~~~n~E~~~~i~~ 129 (155)
T 1byr_A 89 NFPIQHDKVIIV---DNVTVETGSFNFTKAAETKNSENAVVIWN 129 (155)
T ss_dssp SSSCCCCCEEEE---TTTEEEEESCCBSHHHHHTSCEEEEEEES
T ss_pred CcccccceEEEE---CCCEEEEECCCCCccccccCcccEEEEcC
Confidence 357899999998 788899999999975332 3445555554
No 43
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=64.77 E-value=3.6 Score=45.07 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=25.5
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCccccc
Q 006675 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN 283 (636)
Q Consensus 251 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~ 283 (636)
.++.||.|+++. ||-.++|.++|++..+|-
T Consensus 162 ~~~r~H~K~~Vi---D~~~a~~Gg~Nl~~d~y~ 191 (506)
T 1v0w_A 162 AFSWNHSKILVV---DGQSALTGGINSWKDDYL 191 (506)
T ss_dssp TTBCBCCCEEEE---TTTEEEEESCCCCHHHHT
T ss_pred ccccceeeEEEE---CCcEEEeeccccCccccc
Confidence 568999999998 888999999999765553
No 44
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=59.95 E-value=5.1 Score=38.39 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.7
Q ss_pred eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006675 498 AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 534 (636)
Q Consensus 498 ~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~ 534 (636)
.++++||+|++..|.. .|||.++++.
T Consensus 165 ~~v~~GS~N~t~~s~~-----------~N~E~~~vi~ 190 (220)
T 4gel_A 165 SIVISGSVNWTALGLG-----------GNWENCIITA 190 (220)
T ss_dssp CEEEEESCCBSHHHHH-----------TSBEEEEEEC
T ss_pred ceEEecCccccccccc-----------cCceEEEEEE
Confidence 5899999999988753 3899999873
No 45
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=48.21 E-value=12 Score=35.67 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=30.2
Q ss_pred CCCCCccceeEEEEeCCccEEEEeCCCCCccccc-cccceEEeec
Q 006675 250 ISFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWN-NKSQGLWMQD 293 (636)
Q Consensus 250 ~~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~-~~tQ~vW~qD 293 (636)
.+.|.+|.|+||. |+-.+++.|+|++..-.. +.+.++.+.|
T Consensus 118 ~~~~~~H~K~~vi---D~~~~~~GS~N~t~~~~~~n~E~~~~i~~ 159 (196)
T 4ggj_A 118 QDLGYMHHKFAIV---DKKVLITGSLNWTTQAIQNNRENVLIMED 159 (196)
T ss_dssp CSSSCCCCEEEEE---TTTEEEEESCCBCHHHHHHCCEEEEEECC
T ss_pred cccccccCcEEEE---cceEEEecCccCChhhhcccceeEEEEEC
Confidence 3568899999998 888899999999876533 3345555543
No 46
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=47.25 E-value=14 Score=32.31 Aligned_cols=67 Identities=25% Similarity=0.362 Sum_probs=45.3
Q ss_pred CCcccCCCCCc-cccCC---CccccccccccceeEEEecCCcceEEEeecCCc-EEEeeCCcccccccccccccccCCcc
Q 006675 22 LPKLPLSQGPN-VIGRT---NIPVSDKRLSRKHITLTASADGSASLVVDGTNP-VVVKSGDQRKKLSSNEHVSIADGDII 96 (636)
Q Consensus 22 ~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ 96 (636)
.|-+-|-.+.+ -|||+ ++.+.|+-+||.|-++.-..+|..-+. -+|- |-|+ |+|- ..+.|..||.|
T Consensus 12 ~p~v~l~~~~~~rIGR~~~~~l~LddpsVs~~HAti~~~~~G~~~l~--S~nGtVFVN--Gqrv-----~~~~I~~gDtI 82 (102)
T 3uv0_A 12 LPAILLKADTIYRIGRQKGLEISIADESMELAHATACILRRGVVRLA--ALVGKIFVN--DQEE-----TVVDIGMENAV 82 (102)
T ss_dssp SCCEECCTTCCEEEESSTTSTEECCCTTSCTTCEEEEEEETTEEEEE--ESSSCEEET--TEEE-----SEEEECGGGCB
T ss_pred cccEEeecCcEEEEcCCCCCcEEECCcccccceEEEEecCCceEEEE--eccCcEEEC--CEEe-----eeEEccCCccc
Confidence 34454555555 38886 689999999999999999989888443 5555 4442 3332 35567788875
Q ss_pred c
Q 006675 97 E 97 (636)
Q Consensus 97 ~ 97 (636)
-
T Consensus 83 ~ 83 (102)
T 3uv0_A 83 A 83 (102)
T ss_dssp T
T ss_pred c
Confidence 3
No 47
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=46.06 E-value=6.5 Score=41.10 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=28.4
Q ss_pred cccCCCCCccccCCC------ccccccccccceeEEEec
Q 006675 24 KLPLSQGPNVIGRTN------IPVSDKRLSRKHITLTAS 56 (636)
Q Consensus 24 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 56 (636)
++.|..|.-+|||.+ |++.|+-+||+|.+|+..
T Consensus 15 r~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~ 53 (325)
T 3huf_A 15 SRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTIL 53 (325)
T ss_dssp CEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEEC
T ss_pred EEEecCCeEEECCCCCccCceeecCCCCccccceEEEEe
Confidence 577788889999984 478999999999999886
No 48
>1v0w_A Phospholipase D; hydrolase, substrate SOAK, dibutyrylphosphatidylcholine, DIC4PC; 1.35A {Streptomyces SP} SCOP: d.136.1.2 d.136.1.2 PDB: 1v0s_A 1v0r_A 1v0t_A 1v0v_A 1v0u_A 1v0y_A* 1f0i_A 2ze4_A* 2ze9_A*
Probab=38.75 E-value=26 Score=38.16 Aligned_cols=37 Identities=14% Similarity=0.105 Sum_probs=30.2
Q ss_pred CCCccceeEEEEeCCccEEEEeCCCCCccccccccceEEeec
Q 006675 252 FGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQD 293 (636)
Q Consensus 252 fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~qD 293 (636)
-+..|+|+|+. |+-.++|.|+||...-+. +-++.+.+
T Consensus 436 ~~~lHaK~~vv---D~~~~~vGS~N~d~rS~~--E~~l~i~~ 472 (506)
T 1v0w_A 436 PYAQHHKLVSV---DSSTFYIGSKNLYPSWLQ--DFGYIVES 472 (506)
T ss_dssp CCCBCCEEEEE---TTTEEEEESCCSSCCCSB--CEEEEEEC
T ss_pred cccceEEEEEE---CCcEEEEeCCCCCCcchh--hceeEecC
Confidence 35899999998 788899999999887774 55676665
No 49
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=31.09 E-value=40 Score=38.73 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=31.0
Q ss_pred CCcceeEEeec--CCce-eEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006675 483 MPHIKTFARYN--GQKL-AWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 534 (636)
Q Consensus 483 ~PHiKty~r~~--~~~i-~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~ 534 (636)
-.|.|+.+-.. ++.+ .|+++||+|+....++. |.|+|+++.
T Consensus 432 k~H~Ki~VID~re~~~i~~~a~iGS~N~d~rs~~~-----------n~D~~l~i~ 475 (687)
T 1xdp_A 432 KIHAKLFLISRKENGEVVRYAHIGTGNFNEKTARL-----------YTDYSLLTA 475 (687)
T ss_dssp EECCEEEEEEEEETTEEEEEEEEESSCSCTTGGGT-----------EEEEEEEEC
T ss_pred cccceEEEEEeccCCeEEEEEEEeCCcCCcchhhh-----------cceEEEEEe
Confidence 37999977543 3555 89999999998765432 789999885
No 50
>1xdp_A Polyphosphate kinase; PPK, PPK complex with AMPPNP, AMPPNP, transferase; HET: ATP; 2.50A {Escherichia coli} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4 PDB: 1xdo_A*
Probab=24.84 E-value=46 Score=38.21 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=30.6
Q ss_pred CCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEcC
Q 006675 481 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLILP 535 (636)
Q Consensus 481 ~a~PHiKty~r~~~~~i~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~P 535 (636)
+.+-|.|+|.-.+++ -.|+|+||||+..-.-- +|+|+++.+.-
T Consensus 587 r~Leh~rI~~f~~~d-d~~~~IGSAN~d~Rsl~-----------~n~Ev~~~I~d 629 (687)
T 1xdp_A 587 RYLEHDRVYIFENGG-DKKVYLSSADWMTRNID-----------YRIEVATPLLD 629 (687)
T ss_dssp SSEECCCEEEECGGG-SCEEEEESCCBSHHHHH-----------SEEEEEEECCS
T ss_pred HHhhCCeEEEEcCCC-CCEEEEEcCccchhhhh-----------hheeeeEEecC
Confidence 456688987654432 25999999999754322 59999998743
No 51
>3hsi_A Phosphatidylserine synthase; CDP- diacylglycerol--serine O-phosphatidyltransferase, structura genomics, PSI-2; HET: MSE; 2.20A {Haemophilus influenzae}
Probab=23.32 E-value=36 Score=36.93 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCcccccc-ccceEEeecccCCCCCCCCCCCCcHHHHHHHHHhc
Q 006675 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNN-KSQGLWMQDFPLKDQNNLSEECGFENDLIDYLSTL 319 (636)
Q Consensus 251 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~-~tQ~vW~qDfP~~~~~s~~~~t~Fk~DLi~YL~ay 319 (636)
..|.+|+|.|+. |+-.++|.|+||.+.-+.. .+.++.+.+=. ..|..+|...+..+
T Consensus 359 ~~~~lHaK~~vv---D~~~~~vGS~N~d~RS~~lN~E~~~~i~~~~----------~~l~~~l~~~f~~~ 415 (458)
T 3hsi_A 359 GDNTYHLKGVWV---DDRYILLTGNNLNPRAWRLDAENGLLIYDPQ----------QQLLAQVEKEQNQI 415 (458)
T ss_dssp TTBEECCCEEEE---TTTEEEEECCCCSHHHHHTCEEEEEEEECTT----------CSSHHHHHHHHHHH
T ss_pred CCCceeEEEEEE---CCeEEEecCCCCCcchhhhCceeEEEEeCCc----------HHHHHHHHHHHHHH
Confidence 458999999998 6778999999999876643 45677776421 23556665555443
No 52
>2o8r_A Polyphosphate kinase; structural genomics, protein structure initiative, PSI, nysgrc, NEW YORK structural genomics research consortium; HET: MSE; 2.70A {Porphyromonas gingivalis} SCOP: a.7.15.1 d.322.1.2 d.136.1.4 d.136.1.4
Probab=21.39 E-value=52 Score=37.93 Aligned_cols=42 Identities=21% Similarity=0.245 Sum_probs=31.1
Q ss_pred CCCCcceeEEeecCCceeEEEEeccccchhhhhccccCCceeeeeeeeeeeEEc
Q 006675 481 RAMPHIKTFARYNGQKLAWFLLTSANLSKAAWGALQKNNSQLMIRSYELGVLIL 534 (636)
Q Consensus 481 ~a~PHiKty~r~~~~~i~W~lltSaNLSkaAWG~l~k~~sql~IrNyElGVL~~ 534 (636)
+.+-|.|+|.-.+++. .|+|+||||+..-.. -+|+|+++.+.
T Consensus 593 r~Leh~RIy~f~~gd~-~~~~IGSAn~m~Rnl-----------~~r~Ev~~~i~ 634 (705)
T 2o8r_A 593 MYLEHSRIWCFHNGGK-EEVFISSADWMKRNL-----------YNRIETACPVL 634 (705)
T ss_dssp SSEECCCEEEECGGGS-CEEEEESCCBCHHHH-----------HTSBCEEEECC
T ss_pred HHHhcCEEEEEECCCC-cEEEEeccccchhhh-----------hheeEEEEEEc
Confidence 5677999987655433 599999999965432 25899999874
No 53
>2c1l_A Restriction endonuclease; BFII, domain fusion, hydrolase; HET: TAR TLA SRT MES; 1.9A {Bacillus firmus}
Probab=20.55 E-value=62 Score=32.91 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=31.4
Q ss_pred CCCCccceeEEEEeCCccEEEEeCCCCCccccccccceEEee
Q 006675 251 SFGTHHSKAMLLIYPRGVRIIVHTANLIHVDWNNKSQGLWMQ 292 (636)
Q Consensus 251 ~fGtHHSKmmLL~y~dglRVVI~TANLi~~DW~~~tQ~vW~q 292 (636)
.--.+|+|.-+.+-.+|.-+||.|+||+..- +.|-|=++
T Consensus 100 rkRi~HaK~Yg~~~n~g~~LIV~SgNfT~pG---msQNvE~s 138 (358)
T 2c1l_A 100 RKRILHAKLYGTSNNLGESLVVSSGNFTGPG---MSQNIEAS 138 (358)
T ss_dssp CSSCBCCEEEEEEETTEEEEEEESCCBSTTT---TTTSBEEE
T ss_pred eeeecchhhhcccCCCceEEEEecCCccccc---cccceeEE
Confidence 5567899999999999999999999999765 44444444
Done!