BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006679
         (635 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2OPX|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From
           Escherichia Coli
          Length = 479

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 150 QGFHVGLRGQYAGSKEEKHFIHNHLAFTVKY 180
           QGFH G R    G  + KH +H +L   V Y
Sbjct: 446 QGFHAGWRKSGIGGADGKHGLHEYLQTQVVY 476


>pdb|2HG2|A Chain A, Structure Of Lactaldehyde Dehydrogenase
          Length = 479

 Score = 30.0 bits (66), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 150 QGFHVGLRGQYAGSKEEKHFIHNHLAFTVKY 180
           QGFH G R    G  + KH +H +L   V Y
Sbjct: 446 QGFHAGWRKSGIGGADGKHGLHEYLQTQVVY 476


>pdb|2IMP|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
           Coli: The Ternary Complex With Product Bound (L)-Lactate
           And Nadh.
 pdb|2ILU|A Chain A, Crystal Structure Of Lactaldehyde Dehydrogenase From E.
           Coli: The Binary Complex With Nadph
          Length = 479

 Score = 29.6 bits (65), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 150 QGFHVGLRGQYAGSKEEKHFIHNHLAFTVKY 180
           QGFH G R    G  + KH +H +L   V Y
Sbjct: 446 QGFHAGWRKSGIGGADGKHGLHEYLQTQVVY 476


>pdb|3GWY|A Chain A, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
          From Bacteroides Fragilis
 pdb|3GWY|B Chain B, Crystal Structure Of Putative Ctp Pyrophosphohydrolase
          From Bacteroides Fragilis
          Length = 140

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 45 LTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLM 97
          L   + Q  +SY S  Y  P   V+  E+L E L+ + +E   YV ++ E L+
Sbjct: 20 LCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIMEEMDYVIEVGEKLL 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.142    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,843,999
Number of Sequences: 62578
Number of extensions: 700901
Number of successful extensions: 1509
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 7
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)