Query 006679
Match_columns 635
No_of_seqs 127 out of 655
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 12:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1278 Endosomal membrane pro 100.0 2E-201 3E-206 1594.4 55.0 605 19-635 24-628 (628)
2 KOG1277 Endosomal membrane pro 100.0 2E-160 4E-165 1248.8 42.3 554 27-635 29-593 (593)
3 PF02990 EMP70: Endomembrane p 100.0 1E-151 2E-156 1271.3 40.7 517 52-593 1-521 (521)
4 PF11368 DUF3169: Protein of u 86.3 12 0.00025 38.7 12.8 39 407-452 198-236 (248)
5 PF12670 DUF3792: Protein of u 82.6 4.3 9.4E-05 37.0 6.8 76 338-417 6-81 (116)
6 KOG2568 Predicted membrane pro 74.7 2.2 4.8E-05 48.2 2.8 148 330-522 265-418 (518)
7 PF06609 TRI12: Fungal trichot 61.6 1.3E+02 0.0029 35.3 13.7 65 341-414 143-207 (599)
8 PF02990 EMP70: Endomembrane p 60.6 2.2E+02 0.0047 32.8 15.2 122 496-625 334-481 (521)
9 PF13347 MFS_2: MFS/sugar tran 57.9 75 0.0016 34.8 10.7 82 314-401 208-291 (428)
10 KOG1278 Endosomal membrane pro 55.0 3.1E+02 0.0066 31.9 14.5 112 505-623 408-544 (628)
11 PF06570 DUF1129: Protein of u 54.4 69 0.0015 32.0 8.8 45 351-398 91-135 (206)
12 PF05297 Herpes_LMP1: Herpesvi 52.8 4.5 9.9E-05 42.2 0.0 57 368-424 101-159 (381)
13 PF07331 TctB: Tripartite tric 52.0 49 0.0011 30.5 6.8 24 397-421 109-132 (141)
14 PF03806 ABG_transport: AbgT p 50.9 1.3E+02 0.0027 34.6 10.9 91 370-464 294-402 (502)
15 PRK11339 abgT putative aminobe 44.5 83 0.0018 36.1 8.3 88 343-433 265-363 (508)
16 PF08055 Trp_leader1: Tryptoph 42.6 11 0.00023 22.6 0.5 8 557-564 6-13 (18)
17 PF06570 DUF1129: Protein of u 42.6 53 0.0011 32.9 5.8 117 494-627 79-200 (206)
18 COG5393 Predicted membrane pro 41.6 35 0.00076 31.3 3.8 50 345-397 48-108 (131)
19 KOG0569 Permease of the major 40.3 88 0.0019 35.7 7.7 212 299-538 222-450 (485)
20 PF12823 DUF3817: Domain of un 34.9 15 0.00032 32.2 0.4 26 486-511 62-87 (92)
21 TIGR00881 2A0104 phosphoglycer 34.5 1.4E+02 0.0031 30.8 7.9 21 377-397 259-279 (379)
22 TIGR00893 2A0114 d-galactonate 33.3 1.7E+02 0.0038 30.2 8.3 23 379-401 260-282 (399)
23 TIGR00895 2A0115 benzoate tran 33.1 65 0.0014 33.8 5.0 26 375-400 290-315 (398)
24 TIGR02973 nitrate_rd_NapE peri 32.5 30 0.00065 26.0 1.6 35 399-433 2-36 (42)
25 TIGR00901 2A0125 AmpG-related 31.0 3.9E+02 0.0084 27.9 10.6 21 382-402 257-277 (356)
26 COG2271 UhpC Sugar phosphate p 30.1 3.2E+02 0.0069 30.9 9.7 68 382-464 304-372 (448)
27 TIGR00894 2A0114euk Na(+)-depe 28.8 1.7E+02 0.0036 32.3 7.6 27 368-394 299-325 (465)
28 PLN00028 nitrate transmembrane 28.4 1E+02 0.0022 34.6 5.7 33 366-398 288-320 (476)
29 COG2814 AraJ Arabinose efflux 28.3 5.3E+02 0.011 28.7 11.1 68 325-396 205-273 (394)
30 KOG2290 Rhomboid family protei 26.7 4.5E+02 0.0098 29.8 9.9 66 343-408 518-602 (652)
31 PF06796 NapE: Periplasmic nit 26.6 35 0.00077 27.2 1.2 35 398-432 14-48 (56)
32 COG1575 MenA 1,4-dihydroxy-2-n 26.5 3.2E+02 0.007 29.3 8.6 121 280-403 44-177 (303)
33 PF09605 Trep_Strep: Hypotheti 26.3 1.2E+02 0.0027 29.8 5.3 22 445-466 157-178 (186)
34 PF12271 Chs3p: Chitin synthas 26.3 8.2E+02 0.018 26.1 14.1 121 343-464 118-246 (293)
35 TIGR02972 TMAO_torE trimethyla 26.0 36 0.00078 26.2 1.1 35 398-432 6-40 (47)
36 PF14093 DUF4271: Domain of un 25.2 6.4E+02 0.014 24.9 10.3 15 380-394 90-104 (208)
37 PRK11273 glpT sn-glycerol-3-ph 25.0 1.1E+02 0.0023 33.9 5.1 21 377-397 296-316 (452)
38 COG2322 Predicted membrane pro 22.1 7.6E+02 0.016 24.3 9.7 95 370-468 46-144 (177)
39 PF09685 Tic20: Tic20-like pro 21.9 4.4E+02 0.0096 22.8 7.6 25 451-475 81-105 (109)
40 TIGR00819 ydaH p-Aminobenzoyl- 21.6 3.3E+02 0.007 31.5 8.1 50 343-393 267-328 (513)
41 PRK09546 zntB zinc transporter 21.0 73 0.0016 34.0 2.7 27 442-468 263-289 (324)
42 PF09847 DUF2074: Predicted pe 20.5 1.3E+03 0.027 26.2 12.7 19 490-509 403-421 (449)
No 1
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.5e-201 Score=1594.45 Aligned_cols=605 Identities=65% Similarity=1.167 Sum_probs=580.1
Q ss_pred cCccccCCCCCcCCCCCCeEEEEEeeccCCCCCcccccccCCCCCCCCccccccCcCcceecCeeeeCceEEEecccccc
Q 006679 19 DDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMC 98 (635)
Q Consensus 19 ~~~f~lpg~~p~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c 98 (635)
+.|||+||++|..|++||+++++|||++|.++|.||+||++|||+|+++++++|||||+|+|||++||||+++|++|++|
T Consensus 24 ~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnLGeVl~GDRi~nSPy~~~m~e~~~C 103 (628)
T KOG1278|consen 24 SSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENLGEVLRGDRIENSPYKFKMLENQPC 103 (628)
T ss_pred ccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccchhceeccCcccCCCceEecccCCcc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeecCHHHHHHHHHHHhhccEEEEEEeeeeeeeeccCCCCCCceeeecCccccccccccCCCCCceEEeeeEEEEE
Q 006679 99 NVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTV 178 (635)
Q Consensus 99 ~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~ID~LPv~~~~~~~~~~~~~~~~~GfplG~~~~~~~~~~~~~yl~NH~~f~I 178 (635)
+.+|+.++++++++.++|+|+++|++||++||||++.+.... ++++.+|++|||+|+.++ ++.+++|++||++|+|
T Consensus 104 ~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~-~~~~~~y~~GfplG~~~~---~~~~~~y~~NHl~~~i 179 (628)
T KOG1278|consen 104 ETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERS-DDGKVYYGTGFPLGFKGP---KDEDKYYLHNHLDFVI 179 (628)
T ss_pred hhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeec-CCCceEeccCccceeccC---CCccceeEeeeEEEEE
Confidence 999999999999999999999999999999999998876542 357899999999999842 2456789999999999
Q ss_pred EEecCCCCCccEEEEEEEEeeeeeccCCCCcccccccccCCCcccccccCCCCCcccCCCcEEEEEEEEEEEecccccch
Q 006679 179 KYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWAS 258 (635)
Q Consensus 179 ~y~~~~~~~~~~IVg~~v~p~Sv~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~ 258 (635)
+||..+ +++||||||||+|+|++|+.++.++++ .+.+|+.+.++..++| .+++++.|||||+|+|||++|++
T Consensus 180 ~yH~~~-~~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~~~~~~e------~~~~~i~fTYsV~f~esdi~Was 251 (628)
T KOG1278|consen 180 RYHRDD-NDKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEKPLELDE------GEETEIVFTYSVKFEESDIKWAS 251 (628)
T ss_pred EEEecC-CCceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCCccccCC------CCceEEEEEEEEEEEeccCcchh
Confidence 999887 677999999999999999876543333 6677887766555444 23567999999999999999999
Q ss_pred hhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhhhcCceEEeccccCCCCCcccch
Q 006679 259 RWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLC 338 (635)
Q Consensus 259 Rwd~yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs 338 (635)
|||+||++++.|||||||+||++||+||+++|++|++||||||++|||++|.|||+|||+|||+|||||||||+++|+||
T Consensus 252 RWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLVhGDVFR~P~~~~lLs 331 (628)
T KOG1278|consen 252 RWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLVHGDVFRPPRNSMLLS 331 (628)
T ss_pred hHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEeecccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred heeccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHHH
Q 006679 339 VYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICF 418 (635)
Q Consensus 339 ~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~ 418 (635)
++||+|+|+++|+++++++|++|++||++||+|+|+++++|+++|++|||+|+|+||+++|+.||+++++|++++||+++
T Consensus 332 v~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf 411 (628)
T KOG1278|consen 332 VLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVF 411 (628)
T ss_pred EEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhhchhhhhhhhcccCCCCCCCCccCCCCCCCCCCCCccccchhhhc
Q 006679 419 AIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILI 498 (635)
Q Consensus 419 ~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~ 498 (635)
++++++|++.|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+||||||||||.||||+++++.+++
T Consensus 412 ~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili 491 (628)
T KOG1278|consen 412 AIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILI 491 (628)
T ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhhHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeheeccCchhHHHHHH
Q 006679 499 GGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLY 578 (635)
Q Consensus 499 ~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~f~Y 578 (635)
||++||++|||||+||++|+|.+|+||+||||+++++||+++|||+||++||+|||+||||||||||++||++|+|+|+|
T Consensus 492 ~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiY 571 (628)
T KOG1278|consen 492 AGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIY 571 (628)
T ss_pred hcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhheeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 006679 579 AAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 635 (635)
Q Consensus 579 si~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv~~IY~~iK~D 635 (635)
|++|+++|++++|++++++|||||++++++++|+||||||+||+|||||||+++|+|
T Consensus 572 si~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD 628 (628)
T KOG1278|consen 572 SIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID 628 (628)
T ss_pred HHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence 999999999999999999999999999999999999999999999999999999998
No 2
>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-160 Score=1248.75 Aligned_cols=554 Identities=39% Similarity=0.777 Sum_probs=525.4
Q ss_pred CCCcCCCCCCeEEEEEeeccCC-CCCcccccccCCCCC--CCCccccccCcCcceecCeeeeCceEEEecccccccccee
Q 006679 27 FYTFALMQGDELKVKVNKLTST-KTQLPYSYYSLPYCK--PERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCR 103 (635)
Q Consensus 27 ~~p~~Y~~Gd~V~l~vNkl~s~-~~~~~Y~Yy~lpfC~--p~~~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c~~lC~ 103 (635)
...|.|++||+|++||||++|+ |+||+|.||+||||+ |+++++++|+|||+|.|||+..|+|+++|+.|++.+++|.
T Consensus 29 e~dh~Yk~~e~VvLw~NkVGPyhNpqETY~YfsLPfC~g~~~~i~hk~etLGEvL~G~eL~~s~y~ikF~~~v~~~v~C~ 108 (593)
T KOG1277|consen 29 ESDHRYKDGEEVVLWMNKVGPYHNPQETYRYFSLPFCSGSKESISHKHETLGEVLQGDELEFSGYEIKFRDNVEKEVYCE 108 (593)
T ss_pred ccccccccCCeeEEEEeccCCCCChhhhceeeccceecCCCcccchhhhhHHhhhCCceeeecceeeeecccCCceeeeh
Confidence 3569999999999999999999 889999999999999 4577889999999999999999999999999999999999
Q ss_pred eecCHHHHHHHHHHHhhccEEEEEEeeeeeeeeccCCCCCCceeeecCccccccccccCCCCCceEEeeeEEEEEEEecC
Q 006679 104 LTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKD 183 (635)
Q Consensus 104 ~~~t~~~~~~l~~~I~~~Y~~~~~ID~LPv~~~~~~~~~~~~~~~~~GfplG~~~~~~~~~~~~~yl~NH~~f~I~y~~~ 183 (635)
+++++++++.++++|+|+|++||++||||+|..+|+.|++ ..+++++|||+||.+|.|.||++
T Consensus 109 ~~L~~e~v~~f~~AI~~~Yyfqmy~DdlPIwGfvGe~d~~-----------------k~~~~~ky~L~thk~f~i~yn~d 171 (593)
T KOG1277|consen 109 KKLSEEKVKAFRYAIENDYYFQMYIDDLPIWGFVGEVDED-----------------KLDNEGKYYLYTHKKFEIGYNGD 171 (593)
T ss_pred hhcCHHHHHHHHHHHHhhheeeeeecCceeeeEeeeeccc-----------------cCCCCCceEEEEeeeEEEeecCc
Confidence 9999999999999999999999999999999999874221 12367889999999999999988
Q ss_pred CCCCccEEEEEEEEeeeeeccCCCCcccccccccCCCcccccccCCCCCcccCCCcEEEEEEEEEEEecccccchhhhhh
Q 006679 184 PQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTY 263 (635)
Q Consensus 184 ~~~~~~~IVg~~v~p~Sv~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~y 263 (635)
|||.++++. |. ..++.++..+++||||+|.|+++++++|.|+|
T Consensus 172 ------rii~vnlt~----~~---------------------------~v~L~~~~~~~~tYsV~W~~t~v~f~~rfdky 214 (593)
T KOG1277|consen 172 ------RIIDVNLTT----HG---------------------------LVDLRPDKKLTFTYSVKWKETEVEFEKRFDKY 214 (593)
T ss_pred ------eEEEEEeee----cc---------------------------cccCCCCCCCceEEEEEeeeccCcHHHHhHhh
Confidence 899999876 11 11233456799999999999999999999999
Q ss_pred ccc--CcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchh-----hhhhhhhcCceEEeccccCCCCCccc
Q 006679 264 LLM--ADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLET-----QEEAQEETGWKLVHGDVFRPPANSDL 336 (635)
Q Consensus 264 l~~--~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~yn~~~~-----~~~~~ee~GWKlvhgDVFR~P~~~~l 336 (635)
++. .+++||||||+||++.|+||+|+|++||+|+||||.+||+++|+ |.|+|||.|||+|||||||||+|+.|
T Consensus 215 ld~~ff~h~IHWfSIfNSfmmVifLvGlvamILMRtLrnDyarY~~dee~~d~~d~d~~~E~GWK~vHgDVFR~p~~~~L 294 (593)
T KOG1277|consen 215 LDPSFFPHRIHWFSIFNSFMMVIFLVGLVAMILMRTLRNDYARYAKDEEALDDMDRDDQEEYGWKQVHGDVFRFPSHPLL 294 (593)
T ss_pred cccccccceeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhccccccccccccceeeecccccCCCccHH
Confidence 963 47789999999999999999999999999999999999998764 34779999999999999999999999
Q ss_pred chheeccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHH
Q 006679 337 LCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGI 416 (635)
Q Consensus 337 Ls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~ 416 (635)
||+++|+|.|++..+++++++|.+|.+.+. ||++++++|++|++||.++||+||.+|.+.||++|.|++++|++++|++
T Consensus 295 fsa~lGsG~Qlf~l~~~ii~~Alvg~fy~~-rGal~saaI~vYAlTs~i~GY~~gs~Y~r~gG~~Wik~m~lta~Lfp~~ 373 (593)
T KOG1277|consen 295 FSAVLGSGAQLFTLVLIIIMLALVGVFYTE-RGALLSAAIVVYALTSPINGYVSGSFYARLGGRRWIKNMLLTASLFPVP 373 (593)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHhcccccccccceeeehhccHHHHHHHHHHhhhhhHH
Confidence 999999999999999999999999999977 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhhchhhhhhhhccc-CCCCCCCCccCCCCCCCCCCCCccccchh
Q 006679 417 CFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFR-KPAIEDPVKTNKIPRQIPEQPWYMNPIFS 495 (635)
Q Consensus 417 ~~~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~lw~~vs~PL~~iG~~~g~k-~~~~~~P~~~n~ipR~IP~~~~y~~~~~~ 495 (635)
++++++++|+++++++|++|+||+|++.++++|++|..||+++|++.|.+ ..+++.||||+++||+||++|||+++.+.
T Consensus 374 ~~~t~~~~N~vai~y~at~AlPfgt~v~v~~iw~fv~~PL~~~G~i~GkN~~~~~~~PCR~~~~pR~Ip~~kWy~~~~~~ 453 (593)
T KOG1277|consen 374 VFGTAFLLNTVAIAYGATAALPFGTIVVVLLIWLFVISPLTVLGGIAGKNRSGEFDAPCRTKAIPREIPPKKWYRSPLVI 453 (593)
T ss_pred HHHHHHHHHHHHHHhccccccCccchHHHHHHHHHHhchHHHcccccccccccCCCCCcccccCCCCCCCccccccchHH
Confidence 99999999999999999999999999999999999999999999999986 45689999999999999999999999999
Q ss_pred hhccccccchhhhHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeheeccCchhHHH
Q 006679 496 ILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYL 575 (635)
Q Consensus 496 ~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~ 575 (635)
+++||+|||++||||+|||++|+|.+++||+|||++++++||+++++||||++||+||++||||||||||+++||+|+|+
T Consensus 454 ~~~gG~LPFgsIfIEmYfIFtSfW~ykiYyvYgfm~lVf~IL~iVtvcvTIv~TYFlLnaEDyrW~WtSfls~~ST~~yv 533 (593)
T KOG1277|consen 454 MLMGGFLPFGSIFIEMYFIFTSFWGYKIYYVYGFMFLVFVILLIVTVCVTIVLTYFLLNAEDYRWWWTSFLSAGSTALYV 533 (593)
T ss_pred HHhhccCccchhhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhccccceeeeeeeeccccceeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhheeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 006679 576 FLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 635 (635)
Q Consensus 576 f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv~~IY~~iK~D 635 (635)
++||+|||++|++|+|+.|+.+|||||+++|.++|+|||+|||.++..||||||+++|.|
T Consensus 534 y~Ys~yYy~~ktkMsG~fQTsfyFGYm~~f~~~lgim~Gtigy~gt~~FVR~IY~nvK~d 593 (593)
T KOG1277|consen 534 YLYSFYYYFFKTKMSGLFQTSFYFGYMAVFCYALGLMCGTIGYVGTLLFVRKIYRNVKID 593 (593)
T ss_pred hhhHHHHHhhhccccchhhhhhhhHHHHHHHHHHHHHHhhHhhhHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 3
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=100.00 E-value=1e-151 Score=1271.26 Aligned_cols=517 Identities=56% Similarity=1.088 Sum_probs=490.3
Q ss_pred cccccccCCCCCCCC-ccccccCcCcceecCeeeeCceEEEeccccccccceeeecCHHHHHHHHHHHhhccEEEEEEee
Q 006679 52 LPYSYYSLPYCKPER-IVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDN 130 (635)
Q Consensus 52 ~~Y~Yy~lpfC~p~~-~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~ID~ 130 (635)
+|||||+||||+|++ .+++++||||+|+|||+++|||+++|++|++|+.+|+++++++|+++++++|+|+|++||+|||
T Consensus 1 l~Y~Yy~lPfC~P~~~~~~~~~slGevL~Gdr~~~S~y~i~f~~~~~c~~lC~~~l~~~~~~~l~~~I~~~Y~~~~~vD~ 80 (521)
T PF02990_consen 1 LPYDYYDLPFCRPEEGIEHKSESLGEVLRGDRIQNSPYEIKFLQNVTCKVLCKKTLTKEDVKKLKEAIENNYRVEMYVDD 80 (521)
T ss_pred CCccccCCCCcCCCCccccccCCHHHHhccCceecCceEEEEecCcchhhccCccCCHHHHHHHHHHHHHhheeeEEecC
Confidence 599999999999996 8889999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeccCCCCCCceeeecCccccccccccCCCCCceEEeeeEEEEEEEecCCCCCccEEEEEEEEeeeeeccCCCCcc
Q 006679 131 LPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWS 210 (635)
Q Consensus 131 LPv~~~~~~~~~~~~~~~~~GfplG~~~~~~~~~~~~~yl~NH~~f~I~y~~~~~~~~~~IVg~~v~p~Sv~~~~~~~~~ 210 (635)
||+++..++. ++....|..|+|+|.. +++++|||||++|+|+||+++ ++++|||||||+|+|++|.
T Consensus 81 LP~~~~~~~~-~~~~~~y~~G~~~g~~------~~~~~~l~NH~~f~I~Yn~~~-~~~~~IVgf~v~p~Si~~~------ 146 (521)
T PF02990_consen 81 LPIAGFIGSV-DGCDKGYPIGFPLGFK------DDNKYYLYNHLDFTIRYNQES-NGDYRIVGFEVTPRSIDHS------ 146 (521)
T ss_pred ceEEEEeccc-CCcceecCCCcccCcc------cCCcceeEeEEEEEEEEECCC-CCceEEEEEEEEeccccCc------
Confidence 9999998863 2235778889998887 678899999999999999886 6779999999999999886
Q ss_pred cccccccCCCc-ccccccCCCCCcccCCCcEEEEEEEEEEEecccccchhhhhhcc-cCcccchhhhHHHHHHHHHHHHH
Q 006679 211 EKTRLTTCDPH-AKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTYLL-MADDQIHWFSIVNSLMIVVFLSG 288 (635)
Q Consensus 211 ~~~~~~~C~~~-~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~Rwd~yl~-~~~~~ihw~SIiNS~~ivl~L~~ 288 (635)
+|+.+ .++..+++ + ++..+|+|||||+|++++++|++|||+|++ ..++++||+||+||+++|++|++
T Consensus 147 ------~C~~~~~~~~~l~~-~----~~~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~~ihw~SiiNS~iivl~L~~ 215 (521)
T PF02990_consen 147 ------TCPGNESSPQELPE-D----KEADNITFTYSVKWEESDVPWASRWDKYLDSMFDSQIHWFSIINSFIIVLFLSG 215 (521)
T ss_pred ------cccccCCCCeeccC-C----CcccEEEEEEEEEEEecCCchhhccccccccccCCceEEEeHHHHHHHHHHHHH
Confidence 57654 23333333 1 112379999999999999999999999998 78899999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhccchhhhhhhhhcCceEEeccccCCCCCcccchheeccchHHHHHHHHHHHHHHhhccCCCCc
Q 006679 289 MVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNR 368 (635)
Q Consensus 289 ~v~~Il~R~lr~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~~g~lsp~~r 368 (635)
+|++|++|+||||++|||++++++|.+||+|||+|||||||||+|+++||+++|+|+|+++|+++++++|++|+++|++|
T Consensus 216 ~v~~Il~R~l~~D~~~y~~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~~~~a~~g~~~~~~r 295 (521)
T PF02990_consen 216 LVAIILLRTLRRDISRYNDEDSEEDDQEESGWKLVHGDVFRPPKHPMLLSALVGTGIQLLFMALVTLFFAALGFLSPNNR 295 (521)
T ss_pred HHHHHHHHHhhcccccccccccccccccccchhhhhHHHhcCcCCchHHHhHhcchhhhhHHHHHHHHHHHhhhccccCc
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHHHHHHHHHHHHHhhccCCCccChhHHHHHHHH
Q 006679 369 GGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFL 448 (635)
Q Consensus 369 g~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~l 448 (635)
|+++|+++++|+++|++|||+|||+||+++|++||+++++|++++|++++++++++|+++|.++||+|+||+|++.++++
T Consensus 296 g~l~t~~i~~y~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~~~P~~~~~~~~~~n~i~~~~~ss~aipf~t~~~l~~l 375 (521)
T PF02990_consen 296 GSLLTAAIILYALTSFIAGYVSARLYKSFGGKKWKKNSILTSLLFPGILFSIFFILNFIAWSYGSSSAIPFGTILFLIAL 375 (521)
T ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCceeehhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhchhhhhhhhcccCCCC-CCCCccCCCCCCCCCCCCccccchhhhccccccchhhhHHHHHHHHhhhchhhHHHH
Q 006679 449 WFGISVPLVFVGSYIGFRKPAI-EDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLF 527 (635)
Q Consensus 449 w~~vs~PL~~iG~~~g~k~~~~-~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~f 527 (635)
|++|++||+++||++|+|+++. ++|+|+|+|||+||+||||+++.+.++++|++||++|++|++||++|+|.+++||+|
T Consensus 376 w~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W~~~~y~~f 455 (521)
T PF02990_consen 376 WFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQIPPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLWSNKFYYLF 455 (521)
T ss_pred HHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcCCCCccccCCccceeecchHHHHHHHHHHHHHHHHhhcCcceEEe
Confidence 9999999999999999999888 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeheeccCchhHHHHHHHHhhhheeccccCce
Q 006679 528 GFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPV 593 (635)
Q Consensus 528 gfL~~~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~f~Ysi~y~~~~~~~~g~~ 593 (635)
|||+++++|++++|||+||++||+|||+||||||||||++|||+|+|+|+||+||+++|++|+|++
T Consensus 456 gfl~~~~~ll~i~~a~vsI~~tY~~L~~Edy~WwWrSF~~~~s~~~y~f~Ysi~y~~~~~~~~g~~ 521 (521)
T PF02990_consen 456 GFLLLVFILLIITCAEVSIILTYFQLCAEDYRWWWRSFLTGGSSGIYVFLYSIYYYFTKLSMSGFV 521 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeehhCcHHHHHHHHHHHHhhheeEEeeecC
Confidence 999999999999999999999999999999999999999999999999999999999999999974
No 4
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=86.33 E-value=12 Score=38.68 Aligned_cols=39 Identities=15% Similarity=0.436 Sum_probs=20.7
Q ss_pred hhhccchhHHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHh
Q 006679 407 LKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGI 452 (635)
Q Consensus 407 ~lt~~l~P~~~~~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~lw~~v 452 (635)
.++..++|+...++.++ .. .++..+...++.+.++|+-+
T Consensus 198 ~ln~~ll~~~~~~l~i~----s~---~t~~~q~la~lvl~~I~iyi 236 (248)
T PF11368_consen 198 KLNQYLLPILYILLFIY----SL---LTGENQLLAILVLIIIWIYI 236 (248)
T ss_pred HHHHHHHHHHHHHHHHH----HH---HcCCccHHHHHHHHHHHHHH
Confidence 34546667765554433 22 12344555666777777644
No 5
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=82.59 E-value=4.3 Score=36.96 Aligned_cols=76 Identities=16% Similarity=0.308 Sum_probs=55.6
Q ss_pred hheeccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHH
Q 006679 338 CVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGIC 417 (635)
Q Consensus 338 s~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~ 417 (635)
+++-|.-.-+.++.+..++++.+=...+-+.+.+--...+.++++.+++|++++|.- +.|.|..- ..++.++-.++
T Consensus 6 ~vl~g~~~~~~~tl~~~l~~a~ll~~~~~~e~~~~~~~~~i~~ls~~~GG~~a~~~~---~~kG~l~G-~~~Gl~y~~il 81 (116)
T PF12670_consen 6 AVLKGLLVAYIITLILLLLLALLLYFTSLSESILPWLVVIIYILSVFIGGFYAGRKA---GSKGWLHG-LLVGLLYFLIL 81 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccchHHHH-HHHHHHHHHHH
Confidence 455566667777777778888765556677778888889999999999999999874 66788764 55555444333
No 6
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=74.65 E-value=2.2 Score=48.22 Aligned_cols=148 Identities=16% Similarity=0.293 Sum_probs=86.9
Q ss_pred CCCCcccchheeccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHH--HHHHHhhhhHHHHHHHHHhhcCccchhhhh
Q 006679 330 PPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLL--VWIFMGLLAGYASARLYKMFKGTEWKKITL 407 (635)
Q Consensus 330 ~P~~~~lLs~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~--ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~ 407 (635)
.|+-.+.++++++++=+-+.-++++++.--.|+.+|.-+|.++..+.+ +|.+.+.+.|-+ +. +++..=
T Consensus 265 ~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s~i~~l~--~~---~g~~se----- 334 (518)
T KOG2568|consen 265 SPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIASEILGLA--RV---IGNISE----- 334 (518)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHHHHHHHH--HH---hcCccc-----
Confidence 788889999999999998887777666667899999888877775433 233333333322 11 222110
Q ss_pred hhccchhHHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhhchhhhhhhhcccCCCCCCCCccCCCCCCCCCCC
Q 006679 408 KTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQP 487 (635)
Q Consensus 408 lt~~l~P~~~~~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~~~ 487 (635)
. ++..... .++|+--....+..|++.|++=|+- .=++.|++-+-.
T Consensus 335 ~-----~~~~~lf--------------~~ip~ai~d~~f~~wIF~SL~~Tlk----------------~Lr~rRn~vKl~ 379 (518)
T KOG2568|consen 335 L-----SSLLILF--------------AALPLAILDAAFIYWIFISLAKTLK----------------KLRLRRNIVKLS 379 (518)
T ss_pred c-----cchhhHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHH
Confidence 0 1100000 0334444556677888888876652 223446655555
Q ss_pred CccccchhhhccccccchhhhHHHHHHH----Hhhhchh
Q 006679 488 WYMNPIFSILIGGILPFGAIFIELFFIL----TSIWLHQ 522 (635)
Q Consensus 488 ~y~~~~~~~l~~G~lPF~~i~iEl~~i~----~S~W~~~ 522 (635)
-|++-.-.+.++=+..|+-|.+|.++.- +..|...
T Consensus 380 lYr~F~n~l~~~Vvas~~~i~~~~~~~~~~~~~~~Wk~~ 418 (518)
T KOG2568|consen 380 LYRKFTNTLAFSVVASFAFILVETIFYSIMSCNKDWKER 418 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5655333334444456666777877654 5667765
No 7
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=61.61 E-value=1.3e+02 Score=35.29 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=37.8
Q ss_pred eccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchh
Q 006679 341 VGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFP 414 (635)
Q Consensus 341 vG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P 414 (635)
+|.|.|.+... +.+ .+++...|+.-....-+.++....++|.++.++.. ..+|+++..+...+.+
T Consensus 143 vgaG~~~~~~~----~is--El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~---~~~WRw~~~~~~i~~~ 207 (599)
T PF06609_consen 143 VGAGVQELAAL----AIS--ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAA---HSGWRWIFYIFIIWSG 207 (599)
T ss_pred HhhHHHHHHHH----HHH--HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhcc---CCCcchHHHHHHHHHH
Confidence 46777765331 122 33444557654444445556666778888777653 4689988666655433
No 8
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=60.61 E-value=2.2e+02 Score=32.81 Aligned_cols=122 Identities=20% Similarity=0.400 Sum_probs=73.7
Q ss_pred hhccccccchhhhHHHHHHHHhh-hchh--hHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCC----------------
Q 006679 496 ILIGGILPFGAIFIELFFILTSI-WLHQ--FYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSE---------------- 556 (635)
Q Consensus 496 ~l~~G~lPF~~i~iEl~~i~~S~-W~~~--~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~E---------------- 556 (635)
++.+.++|.... =..++++.+ |.++ --..|+-++..+.++++++.-.+++..|+-...+
T Consensus 334 ~lt~~~~P~~~~--~~~~~~n~i~~~~~ss~aipf~t~~~l~~lw~~v~~PL~~lG~~~g~k~~~~~~~p~~~n~ipR~I 411 (521)
T PF02990_consen 334 ILTSLLFPGILF--SIFFILNFIAWSYGSSSAIPFGTILFLIALWFFVSIPLTFLGGYFGFKNPPIDEFPCRTNQIPRQI 411 (521)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHhhhhhhcchhhhcCccccccCCcCCCCCCCcC
Confidence 445567777444 333455554 6554 2356888888888889999988888888764322
Q ss_pred -CCceeeehe---eccC---chhHHHHHHHHhhhheeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 006679 557 -DYLWWWRSY---LTSG---SSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFT 625 (635)
Q Consensus 557 -dy~WwWrSF---~~~g---s~~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv 625 (635)
.-.|.=+.+ +.+| ..++|+.+|.++--+- .+ +....+|+.++..+++.+.|+.|+-+.++.-.
T Consensus 412 P~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~s~W---~~---~~y~~fgfl~~~~~ll~i~~a~vsI~~tY~~L 481 (521)
T PF02990_consen 412 PPQPWYLSPFFSILIGGILPFGAIFIELYFIFSSLW---SN---KFYYLFGFLLLVFILLIITCAEVSIILTYFQL 481 (521)
T ss_pred CCCccccCCccceeecchHHHHHHHHHHHHHHHHhh---cC---cceEEehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124543443 4445 3444666654433221 11 12344677777777888888888888777544
No 9
>PF13347 MFS_2: MFS/sugar transport protein
Probab=57.91 E-value=75 Score=34.76 Aligned_cols=82 Identities=17% Similarity=0.270 Sum_probs=45.7
Q ss_pred hhhhcCceEEeccccCCCCCcccchhee--ccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHH
Q 006679 314 AQEETGWKLVHGDVFRPPANSDLLCVYV--GTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASA 391 (635)
Q Consensus 314 ~~ee~GWKlvhgDVFR~P~~~~lLs~lv--G~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~ 391 (635)
.++..++|..-..+||.|+...++.+.. ..|..+..... .+.+-..+ ..+...+.....+.+.++++....+
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~---~y~~~~vl---~~~~~~~~~~~~~~~~~~v~~~~~~ 281 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFLQWLAFALMNTFL---PYYFTYVL---GNEGLISIFMLIFFVASIVGSPLWG 281 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHHHHhhhhhhhhHH---HHHHHHHh---cCchhhHHHHHHHHHHHHHHHHHHH
Confidence 3455667666678888887665544322 22333222221 11111112 1224455555567778888888889
Q ss_pred HHHHhhcCcc
Q 006679 392 RLYKMFKGTE 401 (635)
Q Consensus 392 ~~yk~~~g~~ 401 (635)
++-|.+|.++
T Consensus 282 ~l~~r~gk~~ 291 (428)
T PF13347_consen 282 RLSKRFGKKK 291 (428)
T ss_pred HHHHHcccee
Confidence 9988886554
No 10
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.02 E-value=3.1e+02 Score=31.91 Aligned_cols=112 Identities=18% Similarity=0.417 Sum_probs=71.1
Q ss_pred hhhhHHHHHHHHh-hhchh--hHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCC----------------CCceee---
Q 006679 505 GAIFIELFFILTS-IWLHQ--FYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSE----------------DYLWWW--- 562 (635)
Q Consensus 505 ~~i~iEl~~i~~S-~W~~~--~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~E----------------dy~WwW--- 562 (635)
|+++.- .|++|. +|.++ ==--|+-+++..+|...++.-.+-+.-|+--+.. ..+|+=
T Consensus 408 Givf~~-~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~ 486 (628)
T KOG1278|consen 408 GIVFAI-FFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPI 486 (628)
T ss_pred hHHHHH-HHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchh
Confidence 334443 445555 69875 2245677777777888888888888888765433 337764
Q ss_pred eheeccCch---hHHHHHHHHhhhheeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006679 563 RSYLTSGSS---ALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFW 623 (635)
Q Consensus 563 rSF~~~gs~---~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~ 623 (635)
.+-+.+|.. ++|+.++.| ++.+=++ |.-+.||+.++.-+++-+.|.-|+.+.++.
T Consensus 487 ~~ili~GilPFg~ifIELfFI---~~SiW~~---qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf 544 (628)
T KOG1278|consen 487 PSILIAGILPFGAIFIELFFI---LSSIWLN---QFYYMFGFLFLVFIILVVTCAEISIVLTYF 544 (628)
T ss_pred hHHHhhcccchHHHHHHHHHH---HHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555542 345555433 3333233 566778998888888888888888887765
No 11
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=54.45 E-value=69 Score=32.02 Aligned_cols=45 Identities=20% Similarity=0.515 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006679 351 FLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFK 398 (635)
Q Consensus 351 ~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~ 398 (635)
.+.+++.+.++++++.++... .+..-++.++++|.+-..+++.+.
T Consensus 91 ~if~~~~gi~~~f~~~~~~~~---gi~tli~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 91 GIFSLLFGIMGFFSPKNSNQY---GIITLILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHhhcccccc---cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777787776332221 233334456777777666666544
No 12
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=52.84 E-value=4.5 Score=42.25 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHhhh--hHHHHHHHHHhhcCccchhhhhhhccchhHHHHHHHHHH
Q 006679 368 RGGLMTAMLLVWIFMGLL--AGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVL 424 (635)
Q Consensus 368 rg~l~t~~i~ly~~~~~i--aGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~~ 424 (635)
.|..+-..+++++++-.+ +=++=..+.+..+..-|...+++-++++-.++++|...+
T Consensus 101 tGQ~LF~Gi~~l~l~~lLaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 101 TGQTLFVGIVILFLCCLLALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp -----------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333 222224456677888888777666666555554444443
No 13
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=51.97 E-value=49 Score=30.48 Aligned_cols=24 Identities=17% Similarity=0.621 Sum_probs=14.6
Q ss_pred hcCccchhhhhhhccchhHHHHHHH
Q 006679 397 FKGTEWKKITLKTAFMFPGICFAIF 421 (635)
Q Consensus 397 ~~g~~W~~~~~lt~~l~P~~~~~i~ 421 (635)
+|.++|++. +..+..+|..+..++
T Consensus 109 ~g~r~~~~~-~~~s~~~~~~i~~~F 132 (141)
T PF07331_consen 109 LGERRWLRL-LLISVVFAAVIYFVF 132 (141)
T ss_pred hCCCcHHHH-HHHHHHHHHHHHHHH
Confidence 347889875 455555666555444
No 14
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=50.92 E-value=1.3e+02 Score=34.57 Aligned_cols=91 Identities=15% Similarity=0.190 Sum_probs=43.1
Q ss_pred hHHHHHHH----HHHHHhhhhHHHHHHHHHhhcC-ccchhhhhhhccchhHHHHHHHHHHHHHHhhccCCC---------
Q 006679 370 GLMTAMLL----VWIFMGLLAGYASARLYKMFKG-TEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSG--------- 435 (635)
Q Consensus 370 ~l~t~~i~----ly~~~~~iaGy~S~~~yk~~~g-~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~~Ss~--------- 435 (635)
.+++..+. +|.+.|.+=|+.||++ ++ ++..+.+--..--....+...++..+++++++.|.-
T Consensus 294 Pf~~gIIpiI~l~F~i~GivYG~~sG~i----ks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA 369 (502)
T PF03806_consen 294 PFMKGIIPIIFLFFLIPGIVYGIASGTI----KSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGA 369 (502)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhcee----cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 45554444 4444555555555543 32 333332222222334445556666667776665541
Q ss_pred ----ccChhHHHHHHHHHHHhhhchhhhhhhhc
Q 006679 436 ----AVPFGTMFALVFLWFGISVPLVFVGSYIG 464 (635)
Q Consensus 436 ----a~pf~ti~~l~~lw~~vs~PL~~iG~~~g 464 (635)
+..+..+..++.+-++.++=--++||--+
T Consensus 370 ~~L~~~~~~~~~l~i~fill~a~iNLfi~S~Sa 402 (502)
T PF03806_consen 370 EFLKSLGLPGIPLIIGFILLTAFINLFIGSASA 402 (502)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhhcchh
Confidence 23334444444444445555555555433
No 15
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=44.46 E-value=83 Score=36.07 Aligned_cols=88 Identities=13% Similarity=0.216 Sum_probs=41.3
Q ss_pred cchHHHHHHHHHHHHHH--hhccCCCCcc-----hHHH----HHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhcc
Q 006679 343 TGVQFFGMFLVTMIFAV--LGFLSPSNRG-----GLMT----AMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAF 411 (635)
Q Consensus 343 ~G~Qll~~~~~~l~~a~--~g~lsp~~rg-----~l~t----~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~ 411 (635)
.|+-++..+...+++.. -|.++....| -+++ ...++|.+.|++-|++++++.+ .++..+.+.-..-
T Consensus 265 Ag~~~l~~~~~i~~l~lP~~g~Lr~~~tG~l~~Sp~~~siv~~i~~~Fli~GivyG~~~g~iks---~~Dv~~~m~~g~~ 341 (508)
T PRK11339 265 AGVVSLLFIAAIALMVIPENGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRR---QADLPHLMIEPMK 341 (508)
T ss_pred HHHHHHHHHHHHHHHHccCCcccccCCCCCccCChHHHhHHHHHHHHHHHHHHHHhhhcccccC---HHHHHHHHHHHHH
Confidence 45555554443333321 4555432224 5666 5556667777777777775432 2333222222222
Q ss_pred chhHHHHHHHHHHHHHHhhccC
Q 006679 412 MFPGICFAIFFVLNALIWGEKS 433 (635)
Q Consensus 412 l~P~~~~~i~~~~N~i~~~~~S 433 (635)
-.-+.++.++...+++.+++.|
T Consensus 342 ~m~~~ivl~F~~Aqfia~F~~s 363 (508)
T PRK11339 342 EMAGFIVMVFPLAQFVAMFNWS 363 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 2223334444555666654333
No 16
>PF08055 Trp_leader1: Tryptophan leader peptide; InterPro: IPR012638 This family consists of the tryptophan (trp) leader peptides. Tryptophan accumulation is the principal event resulting in down regulation of transcription of the structural genes of the trp operon. The leader peptide of the trp operon forms mutually exclusive secondary structures that would either result in the termination of transcription of the trp operon when tryptophan is in plentiful supply or vice versa [].
Probab=42.64 E-value=11 Score=22.56 Aligned_cols=8 Identities=38% Similarity=1.456 Sum_probs=6.0
Q ss_pred CCceeeeh
Q 006679 557 DYLWWWRS 564 (635)
Q Consensus 557 dy~WwWrS 564 (635)
--||||.+
T Consensus 6 ~~nwwwta 13 (18)
T PF08055_consen 6 IQNWWWTA 13 (18)
T ss_pred ccceeeec
Confidence 45899975
No 17
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=42.59 E-value=53 Score=32.86 Aligned_cols=117 Identities=18% Similarity=0.357 Sum_probs=52.0
Q ss_pred hhhhccccccchhhhHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhHHhhhh--hccc--cCCCCceeeeheeccC
Q 006679 494 FSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLC--YFQL--CSEDYLWWWRSYLTSG 569 (635)
Q Consensus 494 ~~~l~~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~t--Y~~L--~~Edy~WwWrSF~~~g 569 (635)
..+.+-+.+-|.+++.=+.-++. .+..+--..+|++.+... . +.+-+.+... |++- +.+...+||+.+..+.
T Consensus 79 ~~~~ld~~L~~~~if~~~~gi~~-~f~~~~~~~~gi~tli~~--~-i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~ 154 (206)
T PF06570_consen 79 WLMALDNSLLFFGIFSLLFGIMG-FFSPKNSNQYGIITLILV--S-IVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISV 154 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccHHHHHHH--H-HHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence 34445555555566554444333 333311111165543222 1 2222233333 3343 3466678999987544
Q ss_pred c-hhHHHHHHHHhhhheeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006679 570 S-SALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRL 627 (635)
Q Consensus 570 s-~~~y~f~Ysi~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv~~ 627 (635)
. ..+++.++.+..++. ..++ ..+ +-...++.|.+.+.+.+++-||
T Consensus 155 ~~~~~w~~~~~~~~~lp-~~in---p~l---------~~~~~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 155 LAMVLWIVIFVLTSFLP-PVIN---PVL---------PPWVYIIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHcc-ccCC---cCC---------CHHHHHHHHHHHHHHHHHHHHH
Confidence 3 344555554444321 1111 222 2233355566666666555443
No 18
>COG5393 Predicted membrane protein [Function unknown]
Probab=41.59 E-value=35 Score=31.26 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHhhcc----------CCCCcc-hHHHHHHHHHHHHhhhhHHHHHHHHHhh
Q 006679 345 VQFFGMFLVTMIFAVLGFL----------SPSNRG-GLMTAMLLVWIFMGLLAGYASARLYKMF 397 (635)
Q Consensus 345 ~Qll~~~~~~l~~a~~g~l----------sp~~rg-~l~t~~i~ly~~~~~iaGy~S~~~yk~~ 397 (635)
.|+++|..+++.|+.+|.. -|.+|= +......++|+++.+.+++ +++|+.
T Consensus 48 l~lllm~gLtl~fa~~~lmsL~vLvi~~f~~tyRl~a~~a~~~vl~vl~~i~ciW---~lrks~ 108 (131)
T COG5393 48 LQLLLMAGLTLLFAAFGLMSLMVLVIWAFDPTYRLNAMIATTAVLLVLALIGCIW---TLRKSR 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 3555555555555554443 366665 6777788889998888876 445543
No 19
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=40.25 E-value=88 Score=35.74 Aligned_cols=212 Identities=18% Similarity=0.187 Sum_probs=0.0
Q ss_pred hhhhhhhccchhhhhhhhhcCceEEec-----------cccCCCC--CcccchheeccchHHHH----HHHHHHHHHHhh
Q 006679 299 YRDISKYNQLETQEEAQEETGWKLVHG-----------DVFRPPA--NSDLLCVYVGTGVQFFG----MFLVTMIFAVLG 361 (635)
Q Consensus 299 r~D~~~yn~~~~~~~~~ee~GWKlvhg-----------DVFR~P~--~~~lLs~lvG~G~Qll~----~~~~~l~~a~~g 361 (635)
||.+++|--.++++++.||.=+..=.. |++|.|+ .+++....+..+.|+-. ..-.+-++--.|
T Consensus 222 ~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG 301 (485)
T KOG0569|consen 222 RKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAG 301 (485)
T ss_pred HHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcC
Q ss_pred ccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHHHHHHHHHHHHHhhccCCCccChhH
Q 006679 362 FLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGT 441 (635)
Q Consensus 362 ~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~~Ss~a~pf~t 441 (635)
+++..--..-.+.-++.++++++|.+.-=|. |+|+....-+....+-.+++.+...++-... +...
T Consensus 302 -~~~~~a~~an~~~g~v~~~~t~~~~~lid~~-----gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~ 367 (485)
T KOG0569|consen 302 -FTPEEAQYANLGIGIVNLLSTLVSPFLIDRL-----GRRPLLLISLSLMAVALLLMSIALFLSNSFG--------SWLS 367 (485)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHH
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcccCCCCCCCCccCCCCCCCCCCCCccccchhhhccccccchhhhHHHHHHHHhhhch
Q 006679 442 MFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLH 521 (635)
Q Consensus 442 i~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~~G~lPF~~i~iEl~~i~~S~W~~ 521 (635)
...+.++..++...-+=.| |..--=.+--.|+++ +..........=--...+-.-.+..+++.|+.
T Consensus 368 y~~i~~~~~~~~~f~~G~g------------pi~~fi~aELf~~~~--R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~ 433 (485)
T KOG0569|consen 368 YLCIAAIFLFIISFAIGPG------------PIPWFIGAELFPQSA--RSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP 433 (485)
T ss_pred HHHHHHHHHHHHhhhcCCC------------chhHHHHHHhCCccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred hhHHHHHHHHHHHHHHH
Q 006679 522 QFYYLFGFLLLVFLILI 538 (635)
Q Consensus 522 ~~yy~fgfL~~~~iili 538 (635)
..|-+|..-.+.+.+.+
T Consensus 434 ~~filF~i~~~~~~i~~ 450 (485)
T KOG0569|consen 434 YVFILFVIPLAIFLIYL 450 (485)
T ss_pred hhhHHHHHHHHHHHHHH
No 20
>PF12823 DUF3817: Domain of unknown function (DUF3817); InterPro: IPR023845 This domain is associated with, strictly bacterial integral membrane proteins. It occurs in proteins that on rare occasions are fused to transporter domains such as the major facilitator superfamily domain. Of three invariant residues, two occur as a His-Gly dipeptide in the middle of three predicted transmembrane helices.
Probab=34.86 E-value=15 Score=32.24 Aligned_cols=26 Identities=23% Similarity=0.683 Sum_probs=21.9
Q ss_pred CCCccccchhhhccccccchhhhHHH
Q 006679 486 QPWYMNPIFSILIGGILPFGAIFIEL 511 (635)
Q Consensus 486 ~~~y~~~~~~~l~~G~lPF~~i~iEl 511 (635)
+.|-.+.....+++|++||++...|-
T Consensus 62 ~rW~~~~~~~~llas~iPfg~f~~er 87 (92)
T PF12823_consen 62 YRWSLKRTLLALLASVIPFGTFWFER 87 (92)
T ss_pred cCCChHHHHHHHHHHcccccHHHHHH
Confidence 45667777889999999999998885
No 21
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=34.51 E-value=1.4e+02 Score=30.84 Aligned_cols=21 Identities=14% Similarity=0.227 Sum_probs=12.6
Q ss_pred HHHHHHhhhhHHHHHHHHHhh
Q 006679 377 LVWIFMGLLAGYASARLYKMF 397 (635)
Q Consensus 377 ~ly~~~~~iaGy~S~~~yk~~ 397 (635)
..+.+.+.++..+++++-+..
T Consensus 259 ~~~~~~~~~~~~~~g~l~~r~ 279 (379)
T TIGR00881 259 TLYELGGLVGTLLAGWLSDKL 279 (379)
T ss_pred HHHHHHcchhHHHHHHHHHHH
Confidence 344556666666777666543
No 22
>TIGR00893 2A0114 d-galactonate transporter.
Probab=33.34 E-value=1.7e+02 Score=30.18 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=13.2
Q ss_pred HHHHhhhhHHHHHHHHHhhcCcc
Q 006679 379 WIFMGLLAGYASARLYKMFKGTE 401 (635)
Q Consensus 379 y~~~~~iaGy~S~~~yk~~~g~~ 401 (635)
+.+.+.++....+++.+.++.++
T Consensus 260 ~~~~~~~~~~~~g~~~~~~~~~~ 282 (399)
T TIGR00893 260 PGIVGFIGMILGGRLSDLLLRRG 282 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34455566666666666555554
No 23
>TIGR00895 2A0115 benzoate transport.
Probab=33.10 E-value=65 Score=33.82 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCc
Q 006679 375 MLLVWIFMGLLAGYASARLYKMFKGT 400 (635)
Q Consensus 375 ~i~ly~~~~~iaGy~S~~~yk~~~g~ 400 (635)
....+.+++.+++.+++++-+.++.+
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (398)
T TIGR00895 290 GGALFNFGGVIGSIIFGWLADRLGPR 315 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcchH
Confidence 34445566677777777776666533
No 24
>TIGR02973 nitrate_rd_NapE periplasmic nitrate reductase, NapE protein. NapE, homologous to TorE (TIGR02972), is a membrane protein of unknown function that is part of the periplasmic nitrate reductase system; it may be part of the enzyme complex. The periplasmic nitrate reductase allows for nitrate respiration in anaerobic conditions.
Probab=32.46 E-value=30 Score=25.97 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=29.1
Q ss_pred CccchhhhhhhccchhHHHHHHHHHHHHHHhhccC
Q 006679 399 GTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKS 433 (635)
Q Consensus 399 g~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~~S 433 (635)
++.|+...+++..++|.+..+....--++.|..+-
T Consensus 2 ~~El~~flfl~~~l~PiLsV~~V~~YGF~vWm~Q~ 36 (42)
T TIGR02973 2 RMELNTFLFLAAVIWPVLSVITVGGYGFAVWMYQI 36 (42)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999988888888888887543
No 25
>TIGR00901 2A0125 AmpG-related permease.
Probab=30.98 E-value=3.9e+02 Score=27.93 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=11.5
Q ss_pred HhhhhHHHHHHHHHhhcCccc
Q 006679 382 MGLLAGYASARLYKMFKGTEW 402 (635)
Q Consensus 382 ~~~iaGy~S~~~yk~~~g~~W 402 (635)
.+++++..++++.+.++.+++
T Consensus 257 ~~~~g~~~~g~l~~r~g~~~~ 277 (356)
T TIGR00901 257 GAILGGLIGGIIMQPLNILYA 277 (356)
T ss_pred HHHHHHHHHHHHHhhhhHHHH
Confidence 444555566666665554443
No 26
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=30.10 E-value=3.2e+02 Score=30.90 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=38.0
Q ss_pred HhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHHHHHHHHHHHH-HhhccCCCccChhHHHHHHHHHHHhhhchhhhh
Q 006679 382 MGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNAL-IWGEKSSGAVPFGTMFALVFLWFGISVPLVFVG 460 (635)
Q Consensus 382 ~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~~N~i-~~~~~Ss~a~pf~ti~~l~~lw~~vs~PL~~iG 460 (635)
+++++||.|=++ |+|+|+..+.+.. +...+-++ .|...+ .-+.-....++.+=++|.-|-.++|
T Consensus 304 G~Ll~GwlSDkl---fkgrR~p~~~i~~----------~~i~~~~~~~w~~~~--~~~~l~~~~l~~iGf~IyGPqmLiG 368 (448)
T COG2271 304 GTLLAGWLSDKL---FKGRRGPMALIFM----------LLITASLVLYWLAPN--GSYLLDAILLFIIGFLIYGPQMLIG 368 (448)
T ss_pred HHHHHHHHHHHh---cccccchHHHHHH----------HHHHHHHHHHHcCCC--ccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 455666666655 6788877653321 11111112 222222 2344556677777889999997777
Q ss_pred hhhc
Q 006679 461 SYIG 464 (635)
Q Consensus 461 ~~~g 464 (635)
-...
T Consensus 369 l~a~ 372 (448)
T COG2271 369 LAAA 372 (448)
T ss_pred HHHh
Confidence 5543
No 27
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=28.79 E-value=1.7e+02 Score=32.29 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=13.0
Q ss_pred cchHHHHHHHHHHHHhhhhHHHHHHHH
Q 006679 368 RGGLMTAMLLVWIFMGLLAGYASARLY 394 (635)
Q Consensus 368 rg~l~t~~i~ly~~~~~iaGy~S~~~y 394 (635)
.|.+.....+.-++++.++|+.+.|+.
T Consensus 299 ~g~~~~~~~~~~~i~~~~~g~l~d~~~ 325 (465)
T TIGR00894 299 NGLLSSLPYLFAWLCSIFAGYLADFLK 325 (465)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334455566666665543
No 28
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=28.40 E-value=1e+02 Score=34.60 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=19.2
Q ss_pred CCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006679 366 SNRGGLMTAMLLVWIFMGLLAGYASARLYKMFK 398 (635)
Q Consensus 366 ~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~ 398 (635)
...+.+.+..-+.=+++.+++|+.+-|+-+..+
T Consensus 288 ~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~ 320 (476)
T PLN00028 288 ETAGAIAASFGLMNLFARPAGGYLSDVAARRFG 320 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcC
Confidence 334444444334445667788888888766543
No 29
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=28.25 E-value=5.3e+02 Score=28.74 Aligned_cols=68 Identities=15% Similarity=0.184 Sum_probs=47.4
Q ss_pred ccccCCCCC-cccchheeccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHh
Q 006679 325 GDVFRPPAN-SDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKM 396 (635)
Q Consensus 325 gDVFR~P~~-~~lLs~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~ 396 (635)
-+++|.|+- ..++..+++.|-|+..-+-+.=++.-.. .-+.+.++..++.|=..++++....||+.+.
T Consensus 205 ~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~----g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 205 LRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVA----GFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHcc----CCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 457888874 3456677778888766544443333221 1256778888999999999999999999754
No 30
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]
Probab=26.66 E-value=4.5e+02 Score=29.79 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=30.2
Q ss_pred cchHHHHHHHHH-HHHHHhhccCCCCcchHHHHHHHHHHHHhh---------hhHHHHHHH-------HHhhcC--ccch
Q 006679 343 TGVQFFGMFLVT-MIFAVLGFLSPSNRGGLMTAMLLVWIFMGL---------LAGYASARL-------YKMFKG--TEWK 403 (635)
Q Consensus 343 ~G~Qll~~~~~~-l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~---------iaGy~S~~~-------yk~~~g--~~W~ 403 (635)
+|.|+.+.+-+. =++-..-++.+.=+.-....+++++.+.|+ +.|..+|-+ |..||. ..||
T Consensus 518 a~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s~~~~PYi~Fg~~d~yrK 597 (652)
T KOG2290|consen 518 AGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTSIIFLPYIDFGDFDLYRK 597 (652)
T ss_pred cccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHhhccccccchhhhhh
Confidence 688876543222 222333444332233333334444444443 234444443 445765 5567
Q ss_pred hhhhh
Q 006679 404 KITLK 408 (635)
Q Consensus 404 ~~~~l 408 (635)
++.++
T Consensus 598 r~~il 602 (652)
T KOG2290|consen 598 RFYIL 602 (652)
T ss_pred HHHHH
Confidence 65433
No 31
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=26.59 E-value=35 Score=27.20 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=28.9
Q ss_pred cCccchhhhhhhccchhHHHHHHHHHHHHHHhhcc
Q 006679 398 KGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEK 432 (635)
Q Consensus 398 ~g~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~~ 432 (635)
+++.|+...+++..++|.+..++...--++.|..+
T Consensus 14 k~~E~~~flfl~~~l~PiL~v~~Vg~YGF~VWm~Q 48 (56)
T PF06796_consen 14 KRSELKAFLFLAVVLFPILAVAFVGGYGFIVWMYQ 48 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888999999999998888888888888654
No 32
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=26.49 E-value=3.2e+02 Score=29.30 Aligned_cols=121 Identities=18% Similarity=0.234 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhhhcCceEEeccccCCCCCcccch-------heeccchHHH--H-
Q 006679 280 LMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLC-------VYVGTGVQFF--G- 349 (635)
Q Consensus 280 ~~ivl~L~~~v~~Il~R~lr~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs-------~lvG~G~Qll--~- 349 (635)
..-+++|.+.+.+...-++-+|..-|.+-.|++++....++-++...=- +|+-...++ +++|...+.. .
T Consensus 44 ~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~-k~~~~l~l~l~~~~g~~llg~~~~~~s~~~ 122 (303)
T COG1575 44 LVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSM-KPALILSLALFLLAGLALLGVILAALSDWL 122 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccC-CHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3344555566666666777778766666443333334445544321100 222111122 1222221111 1
Q ss_pred HHHHHHHHHHhhccC---CCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccch
Q 006679 350 MFLVTMIFAVLGFLS---PSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWK 403 (635)
Q Consensus 350 ~~~~~l~~a~~g~ls---p~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~ 403 (635)
...+.++..+.|.++ |..-|..--.-++.++++|.++ +.+..|-+-+.-.|-
T Consensus 123 ~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~--v~g~~yiqt~~~~~~ 177 (303)
T COG1575 123 VLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLI--VLGAYYIQTGRLSWA 177 (303)
T ss_pred HHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHH--HHHHHHHhcccchHH
Confidence 122223333445554 3333444445566677777765 566677665545554
No 33
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=26.31 E-value=1.2e+02 Score=29.84 Aligned_cols=22 Identities=14% Similarity=0.348 Sum_probs=15.9
Q ss_pred HHHHHHHhhhchhhhhhhhccc
Q 006679 445 LVFLWFGISVPLVFVGSYIGFR 466 (635)
Q Consensus 445 l~~lw~~vs~PL~~iG~~~g~k 466 (635)
.+.+.+.+.+-..++|+++|.|
T Consensus 157 ~~~~~~~~~~v~a~lG~~lG~k 178 (186)
T PF09605_consen 157 MLIIIIIITFVGALLGALLGKK 178 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455677788899999976
No 34
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=26.27 E-value=8.2e+02 Score=26.14 Aligned_cols=121 Identities=20% Similarity=0.240 Sum_probs=73.4
Q ss_pred cchHHHHHHH---HHHHHHHhhccCCCCcchHHHHHHHHH--HHHhhhhHHHHHHHHHhhcC---ccchhhhhhhccchh
Q 006679 343 TGVQFFGMFL---VTMIFAVLGFLSPSNRGGLMTAMLLVW--IFMGLLAGYASARLYKMFKG---TEWKKITLKTAFMFP 414 (635)
Q Consensus 343 ~G~Qll~~~~---~~l~~a~~g~lsp~~rg~l~t~~i~ly--~~~~~iaGy~S~~~yk~~~g---~~W~~~~~lt~~l~P 414 (635)
+++|+.+.+. +.++-+.+|+. -...|+..+..++-- ++..+++||+|--..|.+.| +.-.-.......++|
T Consensus 118 tAi~~g~~~a~~w~Ll~Ng~vgfQ-l~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~~~~~~~~~Lfvl~~l~p 196 (293)
T PF12271_consen 118 TAIQIGLISATCWCLLINGFVGFQ-LWEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGYLSPTNTIALFVLYYLLP 196 (293)
T ss_pred HHHHHHHHHHHHHHHHHhhhheee-eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchhHHHHHHHH
Confidence 4466665433 33444455655 356776665333211 22455667777777776655 222223455566789
Q ss_pred HHHHHHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhhchhhhhhhhc
Q 006679 415 GICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIG 464 (635)
Q Consensus 415 ~~~~~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~lw~~vs~PL~~iG~~~g 464 (635)
++.+.+++++..+....-=-..-|.+.++.-.+++..-++-.-.++-.++
T Consensus 197 ~i~l~~Y~v~q~~lv~~vL~e~wp~g~i~~~~~fFv~gQv~~y~~S~~IC 246 (293)
T PF12271_consen 197 AIFLVIYVVLQLILVLRVLGERWPLGYILLGVFFFVAGQVFLYVFSTHIC 246 (293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Confidence 99999999988887765555667888887777766655555555544444
No 35
>TIGR02972 TMAO_torE trimethylamine N-oxide reductase system, TorE protein. Members of this small, apparent transmembrane protein are designated TorE and occur in operons for the trimethylamine N-oxide (TMAO) reductase system. Members are closely related to the NapE protein of the related periplasmic nitrate reductase system. It may be that TorE is an integral membrane subunit of a complex with the reductase TorA.
Probab=26.02 E-value=36 Score=26.16 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=28.9
Q ss_pred cCccchhhhhhhccchhHHHHHHHHHHHHHHhhcc
Q 006679 398 KGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEK 432 (635)
Q Consensus 398 ~g~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~~ 432 (635)
+++.|+...+++..++|.+..+....--++.|..+
T Consensus 6 k~~El~~flfl~v~l~PiLsV~~Vg~YGF~vWm~Q 40 (47)
T TIGR02972 6 RSNELKALGFIIVVLFPILSVAGIGGYGFIIWMIQ 40 (47)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999998888888888888654
No 36
>PF14093 DUF4271: Domain of unknown function (DUF4271)
Probab=25.20 E-value=6.4e+02 Score=24.86 Aligned_cols=15 Identities=7% Similarity=0.082 Sum_probs=9.1
Q ss_pred HHHhhhhHHHHHHHH
Q 006679 380 IFMGLLAGYASARLY 394 (635)
Q Consensus 380 ~~~~~iaGy~S~~~y 394 (635)
.+++.+.+|...|.-
T Consensus 90 ~i~~~~~~~~~~K~~ 104 (208)
T PF14093_consen 90 IIFLIVFLFFLLKFI 104 (208)
T ss_pred HHHHHHHHHHHHHHH
Confidence 346667777666644
No 37
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=25.03 E-value=1.1e+02 Score=33.91 Aligned_cols=21 Identities=5% Similarity=0.224 Sum_probs=11.6
Q ss_pred HHHHHHhhhhHHHHHHHHHhh
Q 006679 377 LVWIFMGLLAGYASARLYKMF 397 (635)
Q Consensus 377 ~ly~~~~~iaGy~S~~~yk~~ 397 (635)
.++.+.++++..++|.+-..+
T Consensus 296 ~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 296 FLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666665544
No 38
>COG2322 Predicted membrane protein [Function unknown]
Probab=22.09 E-value=7.6e+02 Score=24.26 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHHHHHHHHHHHHHhhc--cCCCccChhHHHH--H
Q 006679 370 GLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGE--KSSGAVPFGTMFA--L 445 (635)
Q Consensus 370 ~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~~i~~~~N~i~~~~--~Ss~a~pf~ti~~--l 445 (635)
..+++....+.+..+++|..--| -|..+|-|..++|++.+-...++++..--.+.-.. +-++.+-..-.+. .
T Consensus 46 p~lnai~~~~s~~~llag~~~Ik----rg~i~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~ 121 (177)
T COG2322 46 PMLNAIFNSLSFIFLLAGWRLIK----RGNIEKHKRAMLTAFTLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILIT 121 (177)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHH
Confidence 34566666677777777753322 34566667778888876665555554432222111 2222211111111 1
Q ss_pred HHHHHHhhhchhhhhhhhcccCC
Q 006679 446 VFLWFGISVPLVFVGSYIGFRKP 468 (635)
Q Consensus 446 ~~lw~~vs~PL~~iG~~~g~k~~ 468 (635)
=.+.-.+++||.+.--+.|.|.+
T Consensus 122 Hi~LA~i~vPLal~al~~a~~~~ 144 (177)
T COG2322 122 HIILAAINVPLALYALILAWKGL 144 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHhcch
Confidence 12345688999999999998865
No 39
>PF09685 Tic20: Tic20-like protein; InterPro: IPR019109 This entry represents a group of uncharacterised conserved proteins including a chloroplast protein import component called Tic20. Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accomplished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex located at the inner membrane. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. Tic20 is a core member of the Tic complex and is deeply embedded in the inner envelope membrane. It is thought to function as a protein conducting component of the Tic complex [].
Probab=21.95 E-value=4.4e+02 Score=22.76 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=18.1
Q ss_pred HhhhchhhhhhhhcccCCCCCCCCc
Q 006679 451 GISVPLVFVGSYIGFRKPAIEDPVK 475 (635)
Q Consensus 451 ~vs~PL~~iG~~~g~k~~~~~~P~~ 475 (635)
+..+-+++.|.+-+.|.++.++|..
T Consensus 81 l~~~v~~I~~~~~a~~g~~~~~P~~ 105 (109)
T PF09685_consen 81 LLSLVLSIIGAIKANKGEPYRYPFI 105 (109)
T ss_pred HHHHHHHHHHHHHHHCCCeeecCee
Confidence 4556677788888888777777754
No 40
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family. The p-Aminobenzoyl-glutamate transporter family includes two transporters, the AbgT (YdaH) protein of E. coli and MtrF of Neisseria gonorrhoea. AbgT is apparently cryptic in wild type cells, but when expressed on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs. p-Aminobenzoate is a constituent of and a precursor for the biosynthesis of folic acid.
Probab=21.62 E-value=3.3e+02 Score=31.46 Aligned_cols=50 Identities=20% Similarity=0.476 Sum_probs=29.7
Q ss_pred cchHHHHHHHHHHHHHHh---hccCCCC--c-------chHHHHHHHHHHHHhhhhHHHHHHH
Q 006679 343 TGVQFFGMFLVTMIFAVL---GFLSPSN--R-------GGLMTAMLLVWIFMGLLAGYASARL 393 (635)
Q Consensus 343 ~G~Qll~~~~~~l~~a~~---g~lsp~~--r-------g~l~t~~i~ly~~~~~iaGy~S~~~ 393 (635)
.|+-++..+.+.+ +.++ |.++... . +.+.....++|.+.|++.|.+++++
T Consensus 267 Ag~~~l~fia~l~-ll~~P~~g~LR~~~tG~l~~SPf~~~iipii~~~Fli~givyG~~~g~i 328 (513)
T TIGR00819 267 AGVVFIAFIAAIA-LMIIPADGILRDPENGLVAGSPFIKGIVPFIFLFFALPGIAYGIATRSI 328 (513)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCcccCCCCCCccCChHHHhHHHHHHHHHHHHHHHHHhhcCcc
Confidence 5666555543333 4455 6665311 1 4556666777888888888877753
No 41
>PRK09546 zntB zinc transporter; Reviewed
Probab=20.97 E-value=73 Score=34.02 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcccCC
Q 006679 442 MFALVFLWFGISVPLVFVGSYIGFRKP 468 (635)
Q Consensus 442 i~~l~~lw~~vs~PL~~iG~~~g~k~~ 468 (635)
.+.++.++-.+.+|++++.|++|.+.+
T Consensus 263 ~m~~Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 263 RTYTMSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 344555555667799999999998643
No 42
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=20.52 E-value=1.3e+03 Score=26.19 Aligned_cols=19 Identities=32% Similarity=0.592 Sum_probs=10.7
Q ss_pred cccchhhhccccccchhhhH
Q 006679 490 MNPIFSILIGGILPFGAIFI 509 (635)
Q Consensus 490 ~~~~~~~l~~G~lPF~~i~i 509 (635)
.+.....++.| ++++++.+
T Consensus 403 ~~~iv~~ii~~-i~~g~~~~ 421 (449)
T PF09847_consen 403 LDTIVLFIING-IIVGIIAI 421 (449)
T ss_pred HHHHHHHHHHH-HHHHHHHH
Confidence 34444444555 67777766
Done!