Query 006679
Match_columns 635
No_of_seqs 127 out of 655
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 46.3 9 0.00031 31.5 2.0 56 271-332 8-68 (79)
2 3o7q_A L-fucose-proton symport 31.2 35 0.0012 35.0 4.2 69 326-399 253-324 (438)
3 1pw4_A Glycerol-3-phosphate tr 25.3 95 0.0033 31.6 6.3 24 374-397 292-315 (451)
4 3cx5_C Cytochrome B-C1 complex 18.1 1.7E+02 0.0059 30.9 6.3 76 555-631 71-153 (385)
5 2qjy_A Cytochrome B; cytochrom 17.9 80 0.0027 34.1 3.8 100 524-623 44-161 (445)
6 2iub_A CORA, divalent cation t 11.1 57 0.002 33.9 0.3 29 439-467 299-327 (363)
7 1vq8_Q 50S ribosomal protein L 10.5 1.4E+02 0.0049 25.3 2.5 27 30-58 32-58 (96)
8 1vf5_A Cytochrome B6; photosyn 10.0 1.2E+02 0.004 29.6 2.0 55 524-578 33-98 (215)
9 2knc_A Integrin alpha-IIB; tra 9.8 2.5E+02 0.0084 21.3 3.3 27 270-296 9-35 (54)
10 3jsl_A DNA ligase; NAD+-depend 9.7 2.7E+02 0.0094 28.5 4.8 33 103-135 83-120 (318)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=46.27 E-value=9 Score=31.45 Aligned_cols=56 Identities=14% Similarity=0.461 Sum_probs=31.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHh-----hhhhhhhccchhhhhhhhhcCceEEeccccCCCC
Q 006679 271 IHWFSIVNSLMIVVFLSGMVAMIMLRTL-----YRDISKYNQLETQEEAQEETGWKLVHGDVFRPPA 332 (635)
Q Consensus 271 ihw~SIiNS~~ivl~L~~~v~~Il~R~l-----r~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~ 332 (635)
.+...|+-..+..++|.|++.+++.|.+ ||..+|+++ ++....|+.-....||+|.
T Consensus 8 ~n~~~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEk------E~~~~~w~~~~NPlyk~~t 68 (79)
T 2knc_B 8 PDILVVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEE------ERARAKWDTANNPLYKEAT 68 (79)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHTTTTCCHHHHCS
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhcccccCCCCCccCCc
Confidence 4556666666666677777777666644 344444432 2333447654444666554
No 2
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=31.23 E-value=35 Score=34.96 Aligned_cols=69 Identities=13% Similarity=0.133 Sum_probs=32.7
Q ss_pred cccCCCCCc-ccchheeccchHHHHHHHHHHH-HHHh-hccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcC
Q 006679 326 DVFRPPANS-DLLCVYVGTGVQFFGMFLVTMI-FAVL-GFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKG 399 (635)
Q Consensus 326 DVFR~P~~~-~lLs~lvG~G~Qll~~~~~~l~-~a~~-g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g 399 (635)
+++|.|+.. .+++.++..+.+.......... +.-. |. + ..........+.+++.++..+++++-+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~----~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~ 324 (438)
T 3o7q_A 253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGM-T----AGFAANYLTGTMVCFFIGRFTGTWLISRFAP 324 (438)
T ss_dssp HHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc-c----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 678877633 2344444445454443333333 2221 21 1 1222223334456666777777777666653
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=25.34 E-value=95 Score=31.64 Aligned_cols=24 Identities=4% Similarity=0.137 Sum_probs=16.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHhh
Q 006679 374 AMLLVWIFMGLLAGYASARLYKMF 397 (635)
Q Consensus 374 ~~i~ly~~~~~iaGy~S~~~yk~~ 397 (635)
.....+.+++++++..++++.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 292 WAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777788888887766
No 4
>3cx5_C Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.32.1.1 f.21.1.2 PDB: 3cxh_C* 1ezv_C* 1kb9_C* 1kyo_C* 1p84_C* 2ibz_C*
Probab=18.10 E-value=1.7e+02 Score=30.87 Aligned_cols=76 Identities=12% Similarity=0.209 Sum_probs=49.2
Q ss_pred CCCCceeeeheeccCchhHHHHHH-----HHhhhhee--ccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 006679 555 SEDYLWWWRSYLTSGSSALYLFLY-----AAFYFFTK--LEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRL 627 (635)
Q Consensus 555 ~Edy~WwWrSF~~~gs~~~y~f~Y-----si~y~~~~--~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv~~ 627 (635)
.-||+|-.|+.-.-|++.+++.+| .+||--.| .+....+..++++.-|+..=...-|=.|-.||.++-.- .+
T Consensus 71 dV~~GwliR~~H~~gAs~ffi~iylHi~Rglyygsy~~Pr~~~W~~Gv~l~ll~m~~aF~GYvLPwgQmS~WgatVi-Tn 149 (385)
T 3cx5_C 71 DVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGSYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVI-TN 149 (385)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHH-HH
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcceeeecHHHHHHHHHHHHHhhhccCCcchhHHHHHH-HH
Confidence 448999999999999999988887 35554444 34455555566666655555555566666666665542 33
Q ss_pred Hhhc
Q 006679 628 IYSS 631 (635)
Q Consensus 628 IY~~ 631 (635)
+.++
T Consensus 150 Llsa 153 (385)
T 3cx5_C 150 LFSA 153 (385)
T ss_dssp GGGG
T ss_pred HHHH
Confidence 4444
No 5
>2qjy_A Cytochrome B; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_A* 2qjk_A* 2qjp_A* 1zrt_C* 2yiu_A*
Probab=17.86 E-value=80 Score=34.08 Aligned_cols=100 Identities=18% Similarity=0.345 Sum_probs=57.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHhhhh------h---ccc-cCCCCceeeeheeccCchhHHHHHH-----HHhhhhee-
Q 006679 524 YYLFGFLLLV-FLILIVTCAEITIVLC------Y---FQL-CSEDYLWWWRSYLTSGSSALYLFLY-----AAFYFFTK- 586 (635)
Q Consensus 524 yy~fgfL~~~-~iilii~~a~vsI~~t------Y---~~L-~~Edy~WwWrSF~~~gs~~~y~f~Y-----si~y~~~~- 586 (635)
.+-||.++.. +++.+++....++--+ | .++ +.-||+|-.|+.-.-|++.+++.+| .+||--.|
T Consensus 44 ~w~fGsll~~~l~iQilTGifLam~Y~p~~~~Af~Sv~~I~rdV~~GwliR~~H~~gAs~ffi~iylHi~RglyygsY~~ 123 (445)
T 2qjy_A 44 MWIWGVVLAFCLVLQIVTGIVLAMHYTPHVDLAFASVEHIMRNVNGGFMLRYLHANGASLFFIAVYLHIFRGLYYGSYKA 123 (445)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHeeccCCcHHHHHHHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence 3458877654 4444444433222110 1 012 2348999999999999999888887 35553333
Q ss_pred -ccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006679 587 -LEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFW 623 (635)
Q Consensus 587 -~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~ 623 (635)
.+....+..++++.-|+..=...-|=.|-.||.++-.
T Consensus 124 Pr~~~W~~Gv~l~ll~m~taF~GYvLPwgQmSfWgatV 161 (445)
T 2qjy_A 124 PREVTWIVGMLIYLAMMATAFMGYVLPWGQMSFWGATV 161 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred CccceeeehHHHHHHHHHHHHHheeccCCccchHHHHH
Confidence 3445555555665555555455555556666666554
No 6
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=11.06 E-value=57 Score=33.87 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHHhhhchhhhhhhhcccC
Q 006679 439 FGTMFALVFLWFGISVPLVFVGSYIGFRK 467 (635)
Q Consensus 439 f~ti~~l~~lw~~vs~PL~~iG~~~g~k~ 467 (635)
.-.++..+.+|-.|-+|+|++.|++|.+.
T Consensus 299 ~N~imk~LTiit~IflP~T~IaGiyGMNf 327 (363)
T 2iub_A 299 TNEVMKVLTIIATIFMPLTFIAGIYGMNF 327 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 35677899999999999999999999864
No 7
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=10.51 E-value=1.4e+02 Score=25.25 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=20.3
Q ss_pred cCCCCCCeEEEEEeeccCCCCCccccccc
Q 006679 30 FALMQGDELKVKVNKLTSTKTQLPYSYYS 58 (635)
Q Consensus 30 ~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~ 58 (635)
..|+.||.|.+.+|- |...-+|+.+|+
T Consensus 32 ~~yk~Gd~VdIk~~~--svqKGmPhk~yH 58 (96)
T 1vq8_Q 32 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 58 (96)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred HHcCCCCEEEEEecC--CccCCCCcccCC
Confidence 679999999998873 234457888775
No 8
>1vf5_A Cytochrome B6; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.21.1.2 PDB: 2d2c_A* 2e74_A* 2e75_A* 2e76_A* 2zt9_A* 1q90_B*
Probab=10.04 E-value=1.2e+02 Score=29.56 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=33.7
Q ss_pred HHHHHHHHHH-HHHHHHHHHhHHhhh------hh---cccc-CCCCceeeeheeccCchhHHHHHH
Q 006679 524 YYLFGFLLLV-FLILIVTCAEITIVL------CY---FQLC-SEDYLWWWRSYLTSGSSALYLFLY 578 (635)
Q Consensus 524 yy~fgfL~~~-~iilii~~a~vsI~~------tY---~~L~-~Edy~WwWrSF~~~gs~~~y~f~Y 578 (635)
.+.||.++.. +++.+++....++-- .| .+++ .-||+|--|+.-.-|++.+++.+|
T Consensus 33 ~w~fGsll~~~l~iqi~TG~~Lam~Y~p~~~~Af~Sv~~I~~dv~~GwliR~~H~~gAs~ffi~~y 98 (215)
T 1vf5_A 33 FYCLGGITLTCFLIQFATGFAMTFYYKPTVTEAYASVQYIMNEVSFGWLIRSIHRWSASMMVLMMI 98 (215)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHTTTCCCSTTTHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcCChhHHHHHHHHHHhhcccchhhccchHHHHHHHHHHHH
Confidence 3557877654 444444443332211 01 1233 338999999999999998888877
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=9.84 E-value=2.5e+02 Score=21.26 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=15.1
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHH
Q 006679 270 QIHWFSIVNSLMIVVFLSGMVAMIMLR 296 (635)
Q Consensus 270 ~ihw~SIiNS~~ivl~L~~~v~~Il~R 296 (635)
.+-|-=|+-|.+.-+++.+++..+|.+
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555665555555555555554
No 10
>3jsl_A DNA ligase; NAD+-dependent, DNA damage, DNA repair, DNA replication, magnesium, manganese, metal-binding, NAD, zinc; HET: DNA; 1.80A {Staphylococcus aureus} SCOP: d.142.2.2 PDB: 3jsn_A*
Probab=9.68 E-value=2.7e+02 Score=28.51 Aligned_cols=33 Identities=15% Similarity=0.456 Sum_probs=29.3
Q ss_pred eeecCHHHHHHHHHHHhh-----ccEEEEEEeeeeeee
Q 006679 103 RLTLSKKTADEFKEKIND-----DYRVNMILDNLPLVV 135 (635)
Q Consensus 103 ~~~~t~~~~~~l~~~I~~-----~Y~~~~~ID~LPv~~ 135 (635)
.+.++.+|+..|.+.+++ +|.++.-+|||-+.-
T Consensus 83 ~n~f~~eel~~f~~r~~~~l~~~~~~~EpKiDGlaisL 120 (318)
T 3jsl_A 83 GNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSL 120 (318)
T ss_dssp EEECSHHHHHHHHHHHHHHTCSCCEEEEEEECSEEEEE
T ss_pred cccCCHHHHHHHHHHHHhhcCCceEEEEEeecceEEEE
Confidence 467899999999999976 899999999999964
Done!