Query 006679
Match_columns 635
No_of_seqs 127 out of 655
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 06:04:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006679.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006679hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 24.5 2E+02 0.014 26.3 11.0 28 375-402 290-317 (447)
2 d1vqoq1 b.34.5.1 (Q:1-95) Ribo 15.9 34 0.0025 27.0 2.3 27 30-58 31-57 (95)
3 d1pv7a_ f.38.1.2 (A:) Lactose 15.4 27 0.002 32.0 1.8 26 373-398 262-287 (417)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 12.2 97 0.007 28.3 4.8 98 523-623 15-131 (246)
5 d2iuba2 f.17.3.1 (A:286-349) M 9.7 66 0.0048 22.9 2.0 26 442-467 5-30 (64)
6 d1sdia_ a.198.1.1 (A:) Hypothe 8.3 68 0.005 28.8 1.9 50 355-404 137-191 (213)
7 d3cx5c2 f.21.1.2 (C:1-261) Mit 7.2 2.8E+02 0.02 25.2 5.9 101 523-626 28-149 (261)
8 d2asba1 b.40.4.5 (A:108-183) S 7.1 1.4E+02 0.01 22.0 3.0 26 20-48 41-66 (76)
9 d1hh2p1 b.40.4.5 (P:127-198) S 6.8 1.4E+02 0.01 21.7 2.8 18 30-47 44-61 (72)
10 d1r7ma2 d.95.2.1 (A:121-225) D 6.6 86 0.0063 24.6 1.6 31 98-128 39-69 (105)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=24.54 E-value=2e+02 Score=26.34 Aligned_cols=28 Identities=4% Similarity=0.088 Sum_probs=16.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCccc
Q 006679 375 MLLVWIFMGLLAGYASARLYKMFKGTEW 402 (635)
Q Consensus 375 ~i~ly~~~~~iaGy~S~~~yk~~~g~~W 402 (635)
...++.+.+.++..+++++-+.++.+..
T Consensus 290 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 317 (447)
T d1pw4a_ 290 AYFLYEYAGIPGTLLCGWMSDKVFRGNR 317 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred hhhcchhhhhhhhhhhhhhhhhcccccc
Confidence 3444555666666667766665554443
No 2
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=15.93 E-value=34 Score=26.98 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=21.3
Q ss_pred cCCCCCCeEEEEEeeccCCCCCccccccc
Q 006679 30 FALMQGDELKVKVNKLTSTKTQLPYSYYS 58 (635)
Q Consensus 30 ~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~ 58 (635)
..|+.||.|.+.+|- |...-+|+.+|+
T Consensus 31 ~~y~~GD~V~I~idp--sv~kGmPh~~yh 57 (95)
T d1vqoq1 31 EEFDDGEKVHLKIDP--SVPNGRFHPRFD 57 (95)
T ss_dssp CCCCTTCEEEECCCT--TCCSSCCCGGGT
T ss_pred eeccCCCEEEEEecC--CeecCccceeec
Confidence 689999999998873 335568888874
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=15.37 E-value=27 Score=31.96 Aligned_cols=26 Identities=0% Similarity=-0.109 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhc
Q 006679 373 TAMLLVWIFMGLLAGYASARLYKMFK 398 (635)
Q Consensus 373 t~~i~ly~~~~~iaGy~S~~~yk~~~ 398 (635)
........+.+.+++..++++-+..+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~l~~r~~ 287 (417)
T d1pv7a_ 262 GYVTTMGELLNASIMFFAPLIINRIG 287 (417)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHC
T ss_pred cccccccccccccchhhhhhhhcccc
Confidence 33444455666777777777766554
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.22 E-value=97 Score=28.26 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhHHhhhhhcccc-------------CCCCceeeeheeccCchhHHHHHH-----HHhhh
Q 006679 523 FYYLFGFLLLVFL-ILIVTCAEITIVLCYFQLC-------------SEDYLWWWRSYLTSGSSALYLFLY-----AAFYF 583 (635)
Q Consensus 523 ~yy~fgfL~~~~i-ilii~~a~vsI~~tY~~L~-------------~Edy~WwWrSF~~~gs~~~y~f~Y-----si~y~ 583 (635)
.+|.+|.++...+ +.+++... +..|+.-+ .-+++|-.|+.-.-|+...++.+| .++|-
T Consensus 15 ~~w~~G~ll~~~~~iqiiTGi~---L~~~Y~p~~~~A~~Sv~~i~~~v~~G~~iR~~H~~gas~~~~~~~lHm~r~~~~~ 91 (246)
T d1ppjc2 15 SWWNFGSLLGICLILQILTGLF---LAMHYTSDTTTAFSSVTHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYG 91 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHH---HHTTCCCCTTTHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHcCChHHHHHHHHHhcCcccCchhhcchhHhHHHHHHHHHHHHHHHHHHhc
Confidence 3456787765544 34443332 22333333 337899999999888888877666 23342
Q ss_pred heeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHH
Q 006679 584 FTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFW 623 (635)
Q Consensus 584 ~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~ 623 (635)
..|..-.-....++|+.-++..=...-|=.|-.||.|+-.
T Consensus 92 sy~~~~~w~~G~~l~~l~m~~af~GY~Lpw~qms~wa~~V 131 (246)
T d1ppjc2 92 SYTFLETWNIGVILLLTVMATAFMGYVLPWGQMSFWGATV 131 (246)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHTTCBHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHHHHHeeccCCCcchhHHHHHH
Confidence 2232111222233443333333333334445555555544
No 5
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=9.74 E-value=66 Score=22.87 Aligned_cols=26 Identities=19% Similarity=0.398 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhchhhhhhhhcccC
Q 006679 442 MFALVFLWFGISVPLVFVGSYIGFRK 467 (635)
Q Consensus 442 i~~l~~lw~~vs~PL~~iG~~~g~k~ 467 (635)
.+..+..+-.+-+|++++.|++|.+.
T Consensus 5 ~mk~lT~it~iflP~t~i~gifGMN~ 30 (64)
T d2iuba2 5 VMKVLTIIATIFMPLTFIAGIYGMNF 30 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCC---
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 35567777788899999999999753
No 6
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli [TaxId: 562]}
Probab=8.35 E-value=68 Score=28.81 Aligned_cols=50 Identities=24% Similarity=0.293 Sum_probs=30.6
Q ss_pred HHHHHhhccCCCC--cc---hHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchh
Q 006679 355 MIFAVLGFLSPSN--RG---GLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKK 404 (635)
Q Consensus 355 l~~a~~g~lsp~~--rg---~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~ 404 (635)
+=--.++-+.|.- +| .|-.....-=+=+-.+||-=|+.+|++.||++|+.
T Consensus 137 iY~dtIS~l~pRI~V~G~~~~L~~~~~a~kIRALLLAGIRaavLWrQ~GG~Rwql 191 (213)
T d1sdia_ 137 IYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQL 191 (213)
T ss_dssp HHHHHTGGGSSCCCCCSCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHhhccCCcEEEeCCHHHhcCcchHHHHHHHHHHHHHHHHHHHHhCCchhhH
Confidence 4444566666632 33 22222222222355678889999999999999974
No 7
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.16 E-value=2.8e+02 Score=25.20 Aligned_cols=101 Identities=17% Similarity=0.224 Sum_probs=59.8
Q ss_pred hHHHHHHHHHHHH-HHHHHHHhHHhhhhhccccC-------------CCCceeeeheeccCchhHHHHHHH-----Hhhh
Q 006679 523 FYYLFGFLLLVFL-ILIVTCAEITIVLCYFQLCS-------------EDYLWWWRSYLTSGSSALYLFLYA-----AFYF 583 (635)
Q Consensus 523 ~yy~fgfL~~~~i-ilii~~a~vsI~~tY~~L~~-------------Edy~WwWrSF~~~gs~~~y~f~Ys-----i~y~ 583 (635)
..|-+|.++...+ +.+++... +..|++-+. =+++|-.|+.-.-|+...++.+|- +||-
T Consensus 28 ~~w~~G~ll~~~~~iqiiTGi~---L~~~Y~p~~~~A~~Sv~~i~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~g 104 (261)
T d3cx5c2 28 YWWNMGSLLGLCLVIQIVTGIF---MAMHYSSNIELAFSSVEHIMRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYG 104 (261)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHH---HHTTCCCSTTTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHheecCChHHHHHHHHHHHhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhc
Confidence 3455787766555 33443332 223333332 278999999999999988877762 3332
Q ss_pred heec--cccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 006679 584 FTKL--EISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTR 626 (635)
Q Consensus 584 ~~~~--~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv~ 626 (635)
..|. ++.-.+..++++.-++..=....|-.|-.||.+.-....
T Consensus 105 sy~~pre~~W~~Gv~l~~l~~~~af~GY~Lpw~q~s~w~~~Vit~ 149 (261)
T d3cx5c2 105 SYRSPRVTLWNVGVIIFILTIATAFLGYCCVYGQMSHWGATVITN 149 (261)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHCBHHHHHHHHHHHH
T ss_pred cccCccchhHHhhHHHHHHHHHHHHhhhhcCCCcchhhHHHHHHH
Confidence 2222 233444556666666666666667777777777766543
No 8
>d2asba1 b.40.4.5 (A:108-183) S1 domain of NusA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=7.13 E-value=1.4e+02 Score=21.98 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=20.2
Q ss_pred CccccCCCCCcCCCCCCeEEEEEeeccCC
Q 006679 20 DMKLFCGFYTFALMQGDELKVKVNKLTST 48 (635)
Q Consensus 20 ~~f~lpg~~p~~Y~~Gd~V~l~vNkl~s~ 48 (635)
..=.+|| ..|+.||.|.+++-++...
T Consensus 41 ~~eqip~---E~y~~Gdrik~~i~~V~~~ 66 (76)
T d2asba1 41 AAEQVPG---ESYEHGNRLRCYVVGVTRG 66 (76)
T ss_dssp GGGSCTT---CCCCTTCEEEEEEEEEECC
T ss_pred HHHcCCC---cccCCCCEEEEEEEEEEec
Confidence 3445566 5699999999999998755
No 9
>d1hh2p1 b.40.4.5 (P:127-198) S1 domain of NusA {Thermotoga maritima [TaxId: 2336]}
Probab=6.76 E-value=1.4e+02 Score=21.74 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.8
Q ss_pred cCCCCCCeEEEEEeeccC
Q 006679 30 FALMQGDELKVKVNKLTS 47 (635)
Q Consensus 30 ~~Y~~Gd~V~l~vNkl~s 47 (635)
..|+.||.|.+++-++..
T Consensus 44 E~~~~Gdrik~~i~~V~~ 61 (72)
T d1hh2p1 44 EEIKAGDLVKVYIIDVVK 61 (72)
T ss_dssp CCCCTTCEEEEEEEEEEE
T ss_pred CCCCCCCEEEEEEEEEEE
Confidence 669999999999998863
No 10
>d1r7ma2 d.95.2.1 (A:121-225) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.62 E-value=86 Score=24.58 Aligned_cols=31 Identities=6% Similarity=0.221 Sum_probs=25.5
Q ss_pred cccceeeecCHHHHHHHHHHHhhccEEEEEE
Q 006679 98 CNVVCRLTLSKKTADEFKEKINDDYRVNMIL 128 (635)
Q Consensus 98 c~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~I 128 (635)
...+|+..+|.+|++.+.+++.+.|..+-.+
T Consensus 39 ~i~l~T~~Ft~~e~~~L~~~L~~kf~l~~~i 69 (105)
T d1r7ma2 39 SIVLNTQSFTFEEVEYLVKGLRNKFQLNCYV 69 (105)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHHHCCCEEE
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCceEEE
Confidence 4568888999999999999999998654433
Done!