BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006680
(635 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGQ|A Chain A, Crystal Structure Of The Apo Form Of The Yeast
Mitochondrial Threonyl- Trna Synthetase Determined At
2.1 Angstrom Resolution
pdb|3UGT|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UGT|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase - Orthorhombic Crystal Form
pdb|3UH0|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Threonyl Sulfamoyl
Adenylate
pdb|4EO4|A Chain A, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|B Chain B, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|C Chain C, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
pdb|4EO4|D Chain D, Crystal Structure Of The Yeast Mitochondrial Threonyl-Trna
Synthetase (Mst1) In Complex With Seryl Sulfamoyl
Adenylate
Length = 460
Score = 258 bits (660), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 135/312 (43%), Positives = 193/312 (61%), Gaps = 30/312 (9%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
++ ELPLR +DF LHRNEASGAL+GLTR+R+F QDD HIFC SQ+K E+ L+ ID
Sbjct: 144 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDI 203
Query: 372 AY-RIFGF---------TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421
Y +IF F Y + STRP+ ++GDL W AE L E L E GKPW++N G
Sbjct: 204 VYNKIFPFVKGGSGAESNYFINFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPG 263
Query: 422 DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG 481
DGAFYGPK+DI V+D L++ Q AT+QLDFQLP+RF+L + +D + +RP+MIHRA G
Sbjct: 264 DGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKFKDQDNS-YKRPIMIHRATFG 322
Query: 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDR 541
S+ER A+L++ +G+WPFWL+P QA++ PV+ K+ +D+ T
Sbjct: 323 SIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNV--------------QQLDMCTA-- 366
Query: 542 KIQKKPNSFVHARSTYIEVVFSCWEELV-AGINIYPIRVSVREAQLAQYNFILVVGEEEA 600
+QKK + + A V + W V I P+ ++ A L Y+++++VG+EE
Sbjct: 367 -LQKKLRNELEADDME-PVPLNDWHFNVDLDIRNEPVGYRIKSAILKNYSYLIIVGDEEV 424
Query: 601 KSGQVSVRVRDQ 612
+ + ++R RD
Sbjct: 425 QLQKYNIRERDN 436
>pdb|1EVK|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVK|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With The Ligand Threonine
pdb|1EVL|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|C Chain C, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1EVL|D Chain D, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase With A Threonyl Adenylate Analog
pdb|1FYF|A Chain A, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1FYF|B Chain B, Crystal Structure Of A Truncated Form Of Threonyl-Trna
Synthetase Complexed With A Seryl Adenylate Analog
pdb|1KOG|A Chain A, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|B Chain B, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|C Chain C, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|D Chain D, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|E Chain E, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|F Chain F, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|G Chain G, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
pdb|1KOG|H Chain H, Crystal Structure Of E. Coli Threonyl-Trna Synthetase
Interacting With The Essential Domain Of Its Mrna
Operator
Length = 401
Score = 238 bits (608), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 184/323 (56%), Gaps = 36/323 (11%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
++ +LPLR+A+FG HRNE SG+L GL RVR F QDDAHIFC E QI+DEV G + +
Sbjct: 106 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYD 165
Query: 372 AYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430
Y FGF +KLSTRPEK +G W++AEA L AL E P++ G+GAFYGPKI
Sbjct: 166 MYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKI 225
Query: 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490
+ ++ D L R +QC T+QLDF LP R + Y ED + + PVMIHRAILGS+ER IL
Sbjct: 226 EFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGIL 284
Query: 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSF 550
E + G +P WL+P Q ++ +++ Y ++ + AG V D + KI K
Sbjct: 285 TEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFK---- 340
Query: 551 VHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVR 610
+RE L + ++LV G++E +SG+V+VR R
Sbjct: 341 ------------------------------IREHTLRRVPYMLVCGDKEVESGKVAVRTR 370
Query: 611 DQGDHSNMSIEDLLKHFKEKLEA 633
D +M + ++++ ++++ +
Sbjct: 371 RGKDLGSMDVNEVIEKLQQEIRS 393
>pdb|1QF6|A Chain A, Structure Of E. Coli Threonyl-Trna Synthetase Complexed
With Its Cognate Trna
Length = 642
Score = 238 bits (607), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 184/323 (56%), Gaps = 36/323 (11%)
Query: 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDY 371
++ +LPLR+A+FG HRNE SG+L GL RVR F QDDAHIFC E QI+DEV G + +
Sbjct: 347 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYD 406
Query: 372 AYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430
Y FGF +KLSTRPEK +G W++AEA L AL E P++ G+GAFYGPKI
Sbjct: 407 MYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKI 466
Query: 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490
+ ++ D L R +QC T+QLDF LP R + Y ED + + PVMIHRAILGS+ER IL
Sbjct: 467 EFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNER-KVPVMIHRAILGSMERFIGIL 525
Query: 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSF 550
E + G +P WL+P Q ++ +++ Y ++ + AG V D + KI K
Sbjct: 526 TEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFK---- 581
Query: 551 VHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVR 610
+RE L + ++LV G++E +SG+V+VR R
Sbjct: 582 ------------------------------IREHTLRRVPYMLVCGDKEVESGKVAVRTR 611
Query: 611 DQGDHSNMSIEDLLKHFKEKLEA 633
D +M + ++++ ++++ +
Sbjct: 612 RGKDLGSMDVNEVIEKLQQEIRS 634
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 126/230 (54%), Gaps = 10/230 (4%)
Query: 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145
ITLPDGS + SPMD+A I LA + VNG L D +E D L + T
Sbjct: 4 ITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITA 62
Query: 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKS 204
+EG + HS AH+LG AI+Q + K+ IGP G FYYD D L + ++
Sbjct: 63 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNG--FYYDVDL-DRTLTQEDVEA 119
Query: 205 IDSEADKAAKQPFERIE--VTRDQALEMFSD--NNFKVEIIN-DLPADKTITVYRCGPLV 259
++ + A++ ++ I+ V+ +A E F++ ++KV I++ ++ D +Y V
Sbjct: 120 LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYV 179
Query: 260 DLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRL 309
D+CRGPH+PN F F +K + AYWRG+ + + LQR+YG ++ DKK L
Sbjct: 180 DMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKAL 229
>pdb|1NYQ|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYQ|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With An Analogue Of Threonyl
Adenylate
pdb|1NYR|A Chain A, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
pdb|1NYR|B Chain B, Structure Of Staphylococcus Aureus Threonyl-Trna
Synthetase Complexed With Atp
Length = 645
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 114/304 (37%), Positives = 170/304 (55%), Gaps = 41/304 (13%)
Query: 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFID 370
H++ ELP+R+A+ G +HR EASGA++GL RVR +D+HIF R QIK+E + V+ I
Sbjct: 348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMII 407
Query: 371 YAYRIFGFT-YELKLSTR----PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAF 425
Y+ FGF Y +LS R EKY D W KAE L EA +E G ++ G+ AF
Sbjct: 408 DVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAF 467
Query: 426 YGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVER 485
YGPK+D+ V A+ ++ +T QLDF LP+RF+L Y +D + RPV+IHR ++ ++ER
Sbjct: 468 YGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQD-GEHHRPVVIHRGVVSTMER 526
Query: 486 MFAILLEHYKGKWPFWLSPRQAIVCPVS-EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQ 544
A L E KG +P WL+P+Q + PV+ + YA Q++D + G V +D + K+
Sbjct: 527 FVAFLTEETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMG 586
Query: 545 KKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQ 604
K +REAQ+ + + +VVG++E ++ Q
Sbjct: 587 YK----------------------------------IREAQMQKIPYQIVVGDKEVENNQ 612
Query: 605 VSVR 608
V+VR
Sbjct: 613 VNVR 616
Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/239 (38%), Positives = 140/239 (58%), Gaps = 7/239 (2%)
Query: 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLF 143
I I PDG+ K + T+ DIAQ IS L A+ NG L D+T+PLE D +++
Sbjct: 4 INIQFPDGNKKAFDKGTTTE-DIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 62
Query: 144 TFDSDEGRDTFWHSSAHILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHF 202
T S+E + HS+AH++ AI++ YG K +GP G FYYD F D ++ D F
Sbjct: 63 TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIEGG--FYYD-FDIDQNISSDDF 119
Query: 203 KSIDSEADKAAKQ--PFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVD 260
+ I+ + + ER V+RD+A E+FS++ +K+E+I+ +P D+ +T+Y G D
Sbjct: 120 EQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTD 179
Query: 261 LCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKHAFAELPLR 319
LCRG H+P+T+ +K F L + AYWRG+ + + LQR+YG ++ DKK LK L R
Sbjct: 180 LCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEER 238
>pdb|3A32|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix
Length = 471
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 119/215 (55%), Gaps = 18/215 (8%)
Query: 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-R 374
LP ++ +FG +HR E SG++ GL RVR F QDDAHI ++ D V V E + R
Sbjct: 132 LPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLER 191
Query: 375 IFGF-----TYELKLSTR-----PEKYLGDLATWEKAEAALTEALNEFGKPWQIN----E 420
+F T++++LS ++++G WE AE AL EA + + + I+ E
Sbjct: 192 LFKLGVSSETFKVRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELE 251
Query: 421 GDGAFYGPKIDISV---SDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHR 477
G+ AFYGPK+D + + +++Q T+Q DF LP RF L +E E +IHR
Sbjct: 252 GEAAFYGPKLDFIMMVEESGVSKEWQMGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHR 311
Query: 478 AILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPV 512
A+LGS+ER + LEH +G+ PF L+P Q V V
Sbjct: 312 ALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAV 346
>pdb|3A31|A Chain A, Crystal Structure Of Putative Threonyl-Trna Synthetase
Thrrs-1 From Aeropyrum Pernix (Selenomethionine
Derivative)
Length = 471
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/215 (37%), Positives = 116/215 (53%), Gaps = 18/215 (8%)
Query: 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-R 374
LP ++ +FG +HR E SG++ GL RVR F QDDAHI ++ D V V E R
Sbjct: 132 LPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEXKLVLER 191
Query: 375 IFGF-----TYELKLSTR-----PEKYLGDLATWEKAEAALTEALNEFGKPWQIN----E 420
+F T++++LS +++ G WE AE AL EA + + + I+ E
Sbjct: 192 LFKLGVSSETFKVRLSXSDKSLIGKEFXGSKEEWEGAEEALREAASRINEKYGIDIVELE 251
Query: 421 GDGAFYGPKIDISV---SDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHR 477
G+ AFYGPK+D + +++Q T+Q DF LP RF L +E E +IHR
Sbjct: 252 GEAAFYGPKLDFIXXVEESGVSKEWQXGTIQFDFNLPRRFRLYDVVREEFGIEEVYIIHR 311
Query: 478 AILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPV 512
A+LGS+ER + LEH +G+ PF L+P Q V V
Sbjct: 312 ALLGSIERFLGVYLEHRRGRXPFTLAPIQFAVIAV 346
>pdb|1TJE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase
pdb|1TKE|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Serine
pdb|1TKG|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|1TKY|A Chain A, Crystal Structure Of The Editing Domain Of Threonyl-trna
Synthetase Complexed With Seryl-3'-aminoadenosine
Length = 224
Score = 128 bits (322), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/224 (35%), Positives = 122/224 (54%), Gaps = 10/224 (4%)
Query: 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145
ITLPDGS + SPMD+A I LA + VNG L D +E D L + T
Sbjct: 4 ITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITA 62
Query: 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKS 204
+EG + HS AH+LG AI+Q + K+ IGP G FYYD D L + ++
Sbjct: 63 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNG--FYYDVDL-DRTLTQEDVEA 119
Query: 205 IDSEADKAAKQPFERIE--VTRDQALEMFSD--NNFKVEIIN-DLPADKTITVYRCGPLV 259
++ + A++ ++ I+ V+ +A E F++ ++KV I++ ++ D +Y V
Sbjct: 120 LEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYV 179
Query: 260 DLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISY 303
D+CRGPH+PN F F +K + AYWRG+ + + LQR+YG ++
Sbjct: 180 DMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAW 223
>pdb|1WWT|A Chain A, Solution Structure Of The Tgs Domain From Human Threonyl-
Trna Synthetase
Length = 88
Score = 82.4 bits (202), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/72 (48%), Positives = 50/72 (69%)
Query: 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKL 142
PIK+TLPDG + + W+T+P IA GIS+ LA N +I+ VN V+WD+ RPLE DC L+L
Sbjct: 11 PIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLEL 70
Query: 143 FTFDSDEGRDTF 154
F+ +E + +
Sbjct: 71 LKFEDEEAQAVY 82
>pdb|4F3Y|A Chain A, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
pdb|4F3Y|B Chain B, X-Ray Crystal Structure Of Dihydrodipicolinate Reductase
From Burkholderia Thailandensis
Length = 272
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 396 ATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPD 455
A +A L AL+ G P Q+ + GAF G + ++++D ++R A +DF LP+
Sbjct: 26 AVLAAPDATLVGALDRTGSP-QLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPE 84
>pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak,
Minimized Average Structure
pdb|2BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, 25
Structures
Length = 191
Score = 32.3 bits (72), Expect = 0.86, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + FE + TR+Q + +VE D LPAD
Sbjct: 136 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 190
>pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPO|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Short Pyrrhocoricin-Derived
Inhibitor Peptide
pdb|3DPP|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPP|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form A)
pdb|3DPQ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|E Chain E, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3DPQ|F Chain F, Crystal Structure Of The Substrate Binding Domain Of E.
Coli Dnak In Complex With A Long Pyrrhocoricin-Derived
Inhibitor Peptide (Form B)
pdb|3QNJ|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|3QNJ|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With The Antimicrobial Peptide
Oncocin
pdb|4E81|A Chain A, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
pdb|4E81|B Chain B, Crystal Structure Of The Substrate Binding Domain Of
E.Coli Dnak In Complex With A Short Apidaecin Peptide
Length = 219
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + FE + TR+Q + +VE D LPAD
Sbjct: 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
>pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKY|B Chain B, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 2 Native
Crystals
pdb|1DKZ|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1 Native
Crystals
Length = 219
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + FE + TR+Q + +VE D LPAD
Sbjct: 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
>pdb|2X6F|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6F|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With 3-Methyladenine
pdb|2X6H|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6H|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34
pdb|2X6I|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6I|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-kinase Vps34 In Complex With Pik-90
pdb|2X6J|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6J|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pik-93
pdb|2X6K|A Chain A, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
pdb|2X6K|B Chain B, The Crystal Structure Of The Drosophila Class Iii
Pi3-Kinase Vps34 In Complex With Pi-103
Length = 696
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 43 PSPNPVKDEEYLIKVIPKRISLFQS 67
P P P+ E Y+ K++P R SLF+S
Sbjct: 398 PIPFPLDPEIYITKIVPMRTSLFKS 422
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/53 (20%), Positives = 32/53 (60%)
Query: 577 IRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 629
I+ +++A F +V+G++E ++ ++ V+ G+ + ++ L+++FK+
Sbjct: 368 IKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 420
>pdb|2DFU|A Chain A, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|B Chain B, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|C Chain C, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
pdb|2DFU|D Chain D, Crystal Structure Of The
2-Hydroxyhepta-2,4-Diene-1,7-Dioate Isomerase From
Thermus Thermophilus Hb8
Length = 264
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 11/75 (14%)
Query: 493 HYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVH 552
HY+G+ + R V P EK+ DH+ GY V VD T R +QKK +V
Sbjct: 112 HYEGELAVVVGDRMRHVPP--EKAL-------DHVL--GYTVAVDITARDVQKKDLQWVR 160
Query: 553 ARSTYIEVVFSCWEE 567
A+S + W E
Sbjct: 161 AKSADKFLPLGPWLE 175
>pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A
Substrate Peptide, Determined From Type 1
Selenomethionyl Crystals
Length = 219
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + F+ + TR+Q + +VE D LPAD
Sbjct: 118 GLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 172
>pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE
(1-605) Complexed With Adp And Substrate
Length = 605
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 196 GLNPDHFKSI--DSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND-LPAD 247
GLN D + + D+EA+ A + F+ + TR+Q + +VE D LPAD
Sbjct: 506 GLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPAD 560
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,894,510
Number of Sequences: 62578
Number of extensions: 799517
Number of successful extensions: 1815
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1777
Number of HSP's gapped (non-prelim): 31
length of query: 635
length of database: 14,973,337
effective HSP length: 105
effective length of query: 530
effective length of database: 8,402,647
effective search space: 4453402910
effective search space used: 4453402910
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)