Query 006680
Match_columns 635
No_of_seqs 411 out of 2943
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 12:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02908 threonyl-tRNA synthet 100.0 5E-126 1E-130 1091.5 55.1 557 40-635 12-686 (686)
2 KOG1637 Threonyl-tRNA syntheta 100.0 1E-113 2E-118 907.5 22.8 439 84-634 2-558 (560)
3 PRK12444 threonyl-tRNA synthet 100.0 6E-105 1E-109 912.9 53.3 516 81-635 3-639 (639)
4 PRK00413 thrS threonyl-tRNA sy 100.0 2.5E-98 5E-103 858.2 51.1 514 83-635 1-636 (638)
5 COG0441 ThrS Threonyl-tRNA syn 100.0 2.3E-97 5E-102 827.8 36.5 463 118-634 2-583 (589)
6 PLN02837 threonine-tRNA ligase 100.0 2.4E-92 5.2E-97 803.5 42.8 457 137-634 29-611 (614)
7 PRK12305 thrS threonyl-tRNA sy 100.0 6.5E-90 1.4E-94 780.3 42.7 451 146-635 1-573 (575)
8 TIGR00418 thrS threonyl-tRNA s 100.0 3.9E-81 8.6E-86 706.9 38.8 438 155-630 1-562 (563)
9 PRK14799 thrS threonyl-tRNA sy 100.0 1.5E-78 3.2E-83 678.5 31.5 370 221-634 45-534 (545)
10 PRK03991 threonyl-tRNA synthet 100.0 4.6E-52 1E-56 471.1 21.9 282 311-634 302-595 (613)
11 cd00771 ThrRS_core Threonyl-tR 100.0 1.7E-44 3.6E-49 378.9 14.6 192 312-504 106-298 (298)
12 PRK12325 prolyl-tRNA synthetas 100.0 3.2E-42 6.9E-47 379.2 20.0 272 311-628 123-438 (439)
13 PRK04173 glycyl-tRNA synthetas 100.0 1.7E-40 3.7E-45 366.5 22.7 291 270-630 136-455 (456)
14 TIGR00408 proS_fam_I prolyl-tR 100.0 8.4E-38 1.8E-42 346.8 15.2 253 311-634 119-384 (472)
15 PRK08661 prolyl-tRNA synthetas 100.0 2.1E-36 4.5E-41 336.1 15.6 252 310-633 124-389 (477)
16 COG0124 HisS Histidyl-tRNA syn 100.0 9.9E-33 2.1E-37 300.3 18.6 263 315-631 99-428 (429)
17 PRK09194 prolyl-tRNA synthetas 100.0 9.1E-31 2E-35 296.8 19.0 278 312-628 124-561 (565)
18 CHL00201 syh histidine-tRNA sy 100.0 2.9E-29 6.4E-34 275.9 23.0 265 313-632 98-419 (430)
19 TIGR00409 proS_fam_II prolyl-t 100.0 9.2E-28 2E-32 271.6 22.6 141 451-629 415-567 (568)
20 PLN02530 histidine-tRNA ligase 100.0 8.9E-28 1.9E-32 268.0 18.1 264 315-623 162-486 (487)
21 PRK14894 glycyl-tRNA synthetas 99.9 2E-27 4.3E-32 259.2 17.9 282 292-632 143-538 (539)
22 PRK00037 hisS histidyl-tRNA sy 99.9 1.1E-26 2.3E-31 253.7 21.5 257 316-631 97-411 (412)
23 TIGR00389 glyS_dimeric glycyl- 99.9 6.2E-27 1.3E-31 261.3 15.5 293 292-630 161-550 (551)
24 TIGR00442 hisS histidyl-tRNA s 99.9 2.6E-23 5.6E-28 226.2 20.6 247 313-613 93-397 (397)
25 PLN02972 Histidyl-tRNA synthet 99.9 2.5E-23 5.5E-28 238.4 20.0 268 316-632 416-761 (763)
26 PLN02734 glycyl-tRNA synthetas 99.9 4.1E-23 8.8E-28 234.1 20.8 297 292-634 253-664 (684)
27 PRK12420 histidyl-tRNA synthet 99.9 2.7E-23 5.8E-28 228.4 16.8 255 315-623 97-422 (423)
28 COG0423 GRS1 Glycyl-tRNA synth 99.9 7.5E-23 1.6E-27 222.6 17.0 318 272-632 141-552 (558)
29 KOG1936 Histidyl-tRNA syntheta 99.9 8.6E-23 1.9E-27 216.3 15.0 272 318-633 151-517 (518)
30 KOG2324 Prolyl-tRNA synthetase 99.8 4.8E-18 1E-22 177.1 16.4 352 184-628 42-427 (457)
31 cd00778 ProRS_core_arch_euk Pr 99.7 6.2E-19 1.3E-23 182.3 5.0 145 311-492 113-260 (261)
32 cd00862 ProRS_anticodon_zinc P 99.7 7.2E-18 1.6E-22 168.2 11.6 104 497-634 3-113 (202)
33 cd00858 GlyRS_anticodon GlyRS 99.7 1.7E-17 3.6E-22 152.4 11.2 100 497-631 19-120 (121)
34 cd00670 Gly_His_Pro_Ser_Thr_tR 99.7 5.3E-18 1.1E-22 170.9 7.6 152 312-491 83-235 (235)
35 PF03129 HGTP_anticodon: Antic 99.7 2E-17 4.4E-22 144.2 7.1 91 506-630 1-94 (94)
36 PRK01584 alanyl-tRNA synthetas 99.7 1.6E-16 3.5E-21 179.3 16.1 135 151-300 452-590 (594)
37 COG0442 ProS Prolyl-tRNA synth 99.7 2.3E-16 4.9E-21 175.0 15.0 276 310-627 122-498 (500)
38 PRK14938 Ser-tRNA(Thr) hydrola 99.7 1.3E-16 2.9E-21 170.3 11.6 113 483-629 249-365 (387)
39 cd00861 ProRS_anticodon_short 99.7 2.7E-16 5.8E-21 136.7 10.6 90 504-627 1-93 (94)
40 KOG4163 Prolyl-tRNA synthetase 99.7 3.3E-17 7.1E-22 173.9 4.0 263 303-634 171-451 (551)
41 KOG2298 Glycyl-tRNA synthetase 99.7 2.3E-16 5E-21 169.2 10.1 120 481-634 464-595 (599)
42 cd02426 Pol_gamma_b_Cterm C-te 99.6 1.2E-15 2.6E-20 141.9 10.7 102 497-632 20-127 (128)
43 PRK12292 hisZ ATP phosphoribos 99.6 1.3E-14 2.8E-19 158.4 13.6 210 315-546 96-369 (391)
44 cd00860 ThrRS_anticodon ThrRS 99.5 2.2E-14 4.7E-19 123.5 9.8 90 504-627 1-90 (91)
45 TIGR00344 alaS alanine--tRNA l 99.5 1.2E-13 2.6E-18 163.1 18.1 132 153-299 557-692 (851)
46 cd00738 HGTP_anticodon HGTP an 99.5 5.9E-14 1.3E-18 121.3 9.7 90 504-627 1-93 (94)
47 PRK00252 alaS alanyl-tRNA synt 99.5 1.7E-13 3.6E-18 162.4 15.5 132 153-299 550-685 (865)
48 PLN02900 alanyl-tRNA synthetas 99.5 7.8E-13 1.7E-17 156.9 19.3 162 123-299 561-732 (936)
49 PRK13902 alaS alanyl-tRNA synt 99.5 3.4E-13 7.4E-18 159.7 15.6 133 153-299 590-727 (900)
50 TIGR03683 A-tRNA_syn_arch alan 99.5 5.9E-13 1.3E-17 157.8 15.1 124 153-283 594-722 (902)
51 COG0013 AlaS Alanyl-tRNA synth 99.4 5.4E-13 1.2E-17 154.9 14.0 124 153-283 564-690 (879)
52 cd00770 SerRS_core Seryl-tRNA 99.4 7E-14 1.5E-18 147.4 6.1 160 312-504 126-295 (297)
53 PRK12421 ATP phosphoribosyltra 99.4 1.5E-12 3.3E-17 142.2 13.6 200 315-540 99-366 (392)
54 PRK05431 seryl-tRNA synthetase 99.4 5.8E-13 1.2E-17 146.9 9.9 156 312-505 245-415 (425)
55 TIGR00414 serS seryl-tRNA synt 99.4 1.2E-12 2.5E-17 144.2 9.7 158 312-505 247-417 (418)
56 cd00772 ProRS_core Prolyl-tRNA 99.3 1.1E-12 2.4E-17 136.1 7.2 85 312-397 114-200 (264)
57 PLN02320 seryl-tRNA synthetase 99.3 1.9E-12 4.1E-17 143.9 8.8 151 312-495 308-475 (502)
58 PLN02961 alanine-tRNA ligase 99.3 2.4E-11 5.2E-16 123.3 15.7 150 122-282 42-211 (223)
59 cd00779 ProRS_core_prok Prolyl 99.3 1.9E-12 4.2E-17 133.6 3.6 143 312-493 108-255 (255)
60 PF00587 tRNA-synt_2b: tRNA sy 99.3 5.9E-12 1.3E-16 122.1 6.0 76 313-389 79-155 (173)
61 PRK00960 seryl-tRNA synthetase 99.2 5.6E-12 1.2E-16 140.9 5.0 161 312-502 330-500 (517)
62 cd00859 HisRS_anticodon HisRS 99.2 2.9E-11 6.2E-16 102.7 8.0 89 506-628 3-91 (91)
63 PF02824 TGS: TGS domain; Int 99.2 2E-11 4.3E-16 99.1 6.5 60 84-144 1-60 (60)
64 PLN02678 seryl-tRNA synthetase 99.2 3E-11 6.5E-16 133.5 8.5 150 312-495 250-409 (448)
65 COG2872 Predicted metal-depend 99.2 9.3E-11 2E-15 119.6 10.7 188 96-299 35-231 (241)
66 cd00773 HisRS-like_core Class 99.1 2.6E-10 5.7E-15 117.8 11.0 126 315-465 80-211 (261)
67 cd00774 GlyRS-like_core Glycyl 99.1 1.2E-10 2.7E-15 120.2 7.4 108 307-415 96-207 (254)
68 PF07973 tRNA_SAD: Threonyl an 98.8 3.1E-09 6.6E-14 81.0 4.2 43 250-299 1-44 (44)
69 cd00768 class_II_aaRS-like_cor 98.7 1.5E-08 3.3E-13 99.3 5.4 137 314-486 72-211 (211)
70 cd01667 TGS_ThrRS_N TGS _ThrRS 98.7 5.6E-08 1.2E-12 76.4 6.6 61 84-145 1-61 (61)
71 TIGR00415 serS_MJ seryl-tRNA s 98.6 1.1E-07 2.3E-12 106.0 8.8 76 312-388 330-406 (520)
72 smart00863 tRNA_SAD Threonyl a 98.6 4.6E-08 9.9E-13 74.1 3.8 38 250-287 1-39 (44)
73 TIGR00443 hisZ_biosyn_reg ATP 98.5 2.2E-07 4.8E-12 98.8 7.8 68 314-388 84-153 (314)
74 KOG0188 Alanyl-tRNA synthetase 98.5 6.2E-07 1.4E-11 101.7 11.1 132 153-299 568-706 (895)
75 cd01616 TGS The TGS domain, na 98.2 3.2E-06 6.9E-11 65.8 6.0 59 85-144 2-60 (60)
76 PF13393 tRNA-synt_His: Histid 98.0 1.3E-05 2.8E-10 84.8 7.1 68 314-388 85-155 (311)
77 PF12745 HGTP_anticodon2: Anti 97.9 4.1E-05 8.9E-10 80.2 10.0 96 505-634 6-109 (273)
78 cd01668 TGS_RelA_SpoT TGS_RelA 97.9 2.3E-05 5E-10 62.3 6.2 59 85-144 2-60 (60)
79 PRK12295 hisZ ATP phosphoribos 97.9 1.3E-05 2.8E-10 87.5 6.4 64 315-388 80-146 (373)
80 COG0172 SerS Seryl-tRNA synthe 97.8 2.9E-05 6.3E-10 85.5 6.1 144 314-495 250-403 (429)
81 KOG2105 Predicted metal-depend 97.7 0.00024 5.2E-09 73.7 10.3 142 129-284 85-234 (415)
82 PRK12293 hisZ ATP phosphoribos 97.7 5.7E-05 1.2E-09 79.5 5.8 59 315-388 93-151 (281)
83 KOG2509 Seryl-tRNA synthetase 97.6 8.7E-05 1.9E-09 80.9 6.9 155 314-504 263-431 (455)
84 COG3705 HisZ ATP phosphoribosy 97.2 0.00074 1.6E-08 73.9 7.7 119 264-399 48-177 (390)
85 PRK07080 hypothetical protein; 97.2 0.0014 3.1E-08 69.4 8.9 68 318-388 153-220 (317)
86 TIGR02367 PylS pyrrolysyl-tRNA 97.0 0.0012 2.6E-08 73.1 6.3 61 315-383 316-376 (453)
87 COG0442 ProS Prolyl-tRNA synth 97.0 0.0023 4.9E-08 72.3 8.5 103 497-633 278-391 (500)
88 PRK09537 pylS pyrolysyl-tRNA s 96.2 0.0077 1.7E-07 66.7 6.3 63 313-383 278-340 (417)
89 PRK11092 bifunctional (p)ppGpp 96.0 0.01 2.2E-07 69.9 6.3 65 82-147 386-450 (702)
90 PTZ00326 phenylalanyl-tRNA syn 95.7 0.019 4.1E-07 64.9 6.6 59 317-383 357-416 (494)
91 PRK07440 hypothetical protein; 95.5 0.058 1.3E-06 45.2 7.4 60 82-145 3-66 (70)
92 PRK05659 sulfur carrier protei 95.4 0.057 1.2E-06 44.2 6.8 58 84-145 1-62 (66)
93 COG0317 SpoT Guanosine polypho 94.9 0.048 1E-06 63.9 6.8 65 82-147 387-451 (701)
94 COG2104 ThiS Sulfur transfer p 94.8 0.11 2.4E-06 43.4 7.0 59 83-145 2-64 (68)
95 PRK10872 relA (p)ppGpp synthet 94.8 0.045 9.8E-07 64.8 6.2 65 82-147 404-468 (743)
96 TIGR00691 spoT_relA (p)ppGpp s 94.7 0.053 1.1E-06 64.0 6.5 67 81-148 359-425 (683)
97 PRK08364 sulfur carrier protei 94.7 0.1 2.2E-06 43.6 6.3 59 83-145 4-66 (70)
98 PRK07696 sulfur carrier protei 93.8 0.18 4E-06 41.8 6.2 59 84-145 1-63 (67)
99 cd00565 ThiS ThiaminS ubiquiti 93.8 0.15 3.2E-06 41.8 5.6 57 86-146 2-62 (65)
100 PRK06944 sulfur carrier protei 93.7 0.21 4.5E-06 40.7 6.2 57 84-145 1-61 (65)
101 PRK06488 sulfur carrier protei 93.7 0.23 5E-06 40.7 6.4 57 84-145 1-61 (65)
102 PRK08053 sulfur carrier protei 93.6 0.26 5.6E-06 40.6 6.7 58 84-145 1-62 (66)
103 PRK04172 pheS phenylalanyl-tRN 93.4 0.15 3.2E-06 58.0 6.6 62 313-382 346-408 (489)
104 PRK12294 hisZ ATP phosphoribos 92.4 0.21 4.6E-06 52.6 5.7 58 316-387 83-142 (272)
105 PRK06083 sulfur carrier protei 90.7 1.2 2.6E-05 38.9 7.5 61 81-145 16-80 (84)
106 PRK06437 hypothetical protein; 90.1 0.97 2.1E-05 37.5 6.2 52 92-146 13-64 (67)
107 KOG1035 eIF-2alpha kinase GCN2 89.9 3.4 7.5E-05 51.2 12.9 89 503-630 1258-1349(1351)
108 PRK05863 sulfur carrier protei 89.6 0.81 1.8E-05 37.6 5.4 56 84-145 1-61 (65)
109 TIGR01683 thiS thiamine biosyn 89.5 1 2.2E-05 36.8 5.8 53 90-145 4-60 (64)
110 PRK11840 bifunctional sulfur c 85.8 1.7 3.7E-05 46.8 6.4 58 84-145 1-62 (326)
111 cd00669 Asp_Lys_Asn_RS_core As 85.4 0.92 2E-05 47.7 4.1 32 319-354 71-102 (269)
112 PRK01777 hypothetical protein; 84.2 4 8.7E-05 36.4 7.0 57 94-151 21-85 (95)
113 PF01409 tRNA-synt_2d: tRNA sy 83.7 3.1 6.7E-05 43.3 7.1 65 312-384 97-162 (247)
114 cd00777 AspRS_core Asp tRNA sy 82.0 1.9 4.1E-05 45.6 4.8 43 319-365 71-114 (280)
115 cd00754 MoaD Ubiquitin domain 79.0 3.9 8.5E-05 34.2 4.9 46 100-145 25-76 (80)
116 COG0173 AspS Aspartyl-tRNA syn 78.9 2.6 5.6E-05 48.3 4.7 78 290-379 182-266 (585)
117 cd01666 TGS_DRG_C TGS_DRG_C: 75.3 4.1 8.8E-05 34.8 3.9 51 93-144 18-75 (75)
118 PF02597 ThiS: ThiS family; I 74.9 6.2 0.00013 32.6 5.0 46 100-145 21-73 (77)
119 TIGR00470 sepS O-phosphoseryl- 74.2 6.9 0.00015 44.4 6.4 63 314-384 204-268 (533)
120 PRK09350 poxB regulator PoxA; 72.7 2 4.3E-05 46.0 1.8 33 319-355 80-112 (306)
121 PLN02799 Molybdopterin synthas 71.7 7.1 0.00015 33.2 4.6 46 100-145 28-78 (82)
122 cd01669 TGS_Ygr210_C TGS_Ygr21 71.2 7.6 0.00017 33.1 4.7 47 96-144 27-76 (76)
123 PLN02853 Probable phenylalanyl 69.2 10 0.00022 43.3 6.4 61 316-384 341-402 (492)
124 TIGR00459 aspS_bact aspartyl-t 68.3 4.6 0.0001 47.1 3.6 40 318-361 207-247 (583)
125 PF14453 ThiS-like: ThiS-like 67.5 17 0.00037 29.5 5.6 54 85-144 2-55 (57)
126 PLN02903 aminoacyl-tRNA ligase 65.6 5.8 0.00013 46.8 3.7 40 318-361 273-313 (652)
127 PRK12820 bifunctional aspartyl 63.3 7 0.00015 46.6 3.8 40 318-361 225-265 (706)
128 cd00775 LysRS_core Lys_tRNA sy 62.0 11 0.00024 40.8 4.8 45 318-366 77-122 (329)
129 PF00152 tRNA-synt_2: tRNA syn 60.5 15 0.00032 39.6 5.5 50 318-371 94-145 (335)
130 TIGR00458 aspS_arch aspartyl-t 59.8 12 0.00026 42.1 4.7 46 318-366 200-246 (428)
131 cd00776 AsxRS_core Asx tRNA sy 58.6 15 0.00031 39.7 5.0 47 318-367 90-138 (322)
132 PRK00476 aspS aspartyl-tRNA sy 55.4 14 0.0003 43.3 4.4 41 318-362 210-251 (588)
133 PRK00484 lysS lysyl-tRNA synth 52.7 20 0.00042 41.1 5.0 32 318-353 241-272 (491)
134 TIGR01682 moaD molybdopterin c 49.6 38 0.00082 28.6 5.2 45 100-144 26-75 (80)
135 PRK00488 pheS phenylalanyl-tRN 47.9 42 0.00092 36.7 6.4 63 314-384 182-245 (339)
136 COG2875 CobM Precorrin-4 methy 47.2 2.6E+02 0.0055 29.3 11.4 73 342-426 44-116 (254)
137 PLN02603 asparaginyl-tRNA synt 46.9 20 0.00044 41.8 4.0 33 318-353 322-355 (565)
138 COG0017 AsnS Aspartyl/asparagi 46.8 23 0.0005 39.9 4.3 33 319-355 201-234 (435)
139 COG0016 PheS Phenylalanyl-tRNA 46.6 33 0.00071 37.5 5.2 60 317-384 192-252 (335)
140 TIGR00462 genX lysyl-tRNA synt 46.2 7.3 0.00016 41.7 0.3 33 318-354 74-106 (304)
141 COG1854 LuxS LuxS protein invo 44.9 78 0.0017 30.8 6.9 58 153-213 51-111 (161)
142 TIGR00457 asnS asparaginyl-tRN 44.8 20 0.00043 40.6 3.5 46 318-366 211-257 (453)
143 PTZ00417 lysine-tRNA ligase; P 44.8 24 0.00053 41.3 4.2 32 319-354 323-354 (585)
144 TIGR00559 pdxJ pyridoxine 5'-p 44.2 71 0.0015 33.2 7.0 47 484-539 73-131 (237)
145 PRK11130 moaD molybdopterin sy 43.5 99 0.0022 26.2 6.8 45 100-144 25-76 (81)
146 PLN02502 lysyl-tRNA synthetase 43.3 20 0.00044 41.7 3.3 40 318-361 298-338 (553)
147 PRK12445 lysyl-tRNA synthetase 43.3 28 0.00061 40.1 4.4 45 318-366 253-298 (505)
148 PLN02221 asparaginyl-tRNA synt 42.9 26 0.00057 40.9 4.1 33 318-353 327-360 (572)
149 PTZ00385 lysyl-tRNA synthetase 41.9 32 0.00069 40.8 4.6 34 318-355 302-335 (659)
150 PTZ00425 asparagine-tRNA ligas 41.6 27 0.00058 40.9 3.9 32 318-352 344-375 (586)
151 PLN02532 asparagine-tRNA synth 41.4 24 0.00052 41.6 3.5 33 318-353 390-423 (633)
152 PRK06462 asparagine synthetase 41.2 25 0.00053 38.2 3.4 48 318-366 103-151 (335)
153 cd00003 PNPsynthase Pyridoxine 41.0 87 0.0019 32.6 7.1 48 483-539 72-131 (234)
154 PRK05159 aspC aspartyl-tRNA sy 41.0 29 0.00064 39.0 4.1 46 318-367 203-251 (437)
155 PRK03932 asnC asparaginyl-tRNA 39.7 39 0.00085 38.2 4.8 46 318-366 208-254 (450)
156 PLN02850 aspartate-tRNA ligase 39.2 25 0.00054 40.7 3.2 34 319-355 293-327 (530)
157 TIGR00499 lysS_bact lysyl-tRNA 38.2 28 0.0006 40.0 3.3 33 318-354 241-273 (496)
158 PRK05265 pyridoxine 5'-phospha 37.5 1.1E+02 0.0024 31.9 7.2 46 484-538 76-133 (239)
159 PTZ00305 NADH:ubiquinone oxido 36.0 1.4E+02 0.003 32.1 7.8 75 84-163 69-160 (297)
160 PTZ00401 aspartyl-tRNA synthet 34.5 33 0.00072 39.9 3.2 47 318-367 280-328 (550)
161 cd05569 PTS_IIB_fructose PTS_I 34.0 2.2E+02 0.0048 25.0 7.7 85 509-632 6-92 (96)
162 cd04938 TGS_Obg-like TGS_Obg-l 32.9 1.1E+02 0.0023 26.1 5.3 44 100-143 31-75 (76)
163 TIGR01687 moaD_arch MoaD famil 32.4 76 0.0016 27.1 4.4 45 100-144 24-83 (88)
164 PF03740 PdxJ: Pyridoxal phosp 31.0 98 0.0021 32.3 5.6 47 484-539 74-132 (239)
165 TIGR00468 pheS phenylalanyl-tR 27.3 1.1E+02 0.0025 32.5 5.6 56 316-379 149-204 (294)
166 PF13510 Fer2_4: 2Fe-2S iron-s 24.7 68 0.0015 27.5 2.7 29 82-112 2-30 (82)
167 KOG2411 Aspartyl-tRNA syntheta 24.1 48 0.0011 37.9 2.1 51 296-352 226-278 (628)
168 PRK00301 aat leucyl/phenylalan 23.9 79 0.0017 32.8 3.5 57 478-539 25-91 (233)
169 PRK02983 lysS lysyl-tRNA synth 23.4 69 0.0015 40.4 3.5 33 319-355 840-872 (1094)
170 COG0011 Uncharacterized conser 22.9 5.8E+02 0.012 23.2 9.1 87 506-631 6-99 (100)
171 cd00496 PheRS_alpha_core Pheny 22.3 1.7E+02 0.0038 29.5 5.6 55 315-377 78-132 (218)
172 PF13399 LytR_C: LytR cell env 22.1 2.8E+02 0.0062 23.5 6.2 83 506-599 5-88 (90)
173 PRK14076 pnk inorganic polypho 21.3 2.8E+02 0.0061 32.4 7.7 51 486-538 274-326 (569)
174 PRK02260 S-ribosylhomocysteina 21.0 3.2E+02 0.007 26.8 6.8 56 154-213 52-111 (158)
175 PF02664 LuxS: S-Ribosylhomocy 20.8 4E+02 0.0086 26.2 7.3 58 152-213 49-111 (157)
176 PF06301 Lambda_Kil: Bacteriop 20.8 87 0.0019 24.0 2.2 24 390-416 16-39 (43)
No 1
>PLN02908 threonyl-tRNA synthetase
Probab=100.00 E-value=5.4e-126 Score=1091.53 Aligned_cols=557 Identities=76% Similarity=1.250 Sum_probs=536.0
Q ss_pred cCCCCCCCCCCchhhhccchhHHHHHHHHHHHHHHHhhCCCCCCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceE
Q 006680 40 CAMPSPNPVKDEEYLIKVIPKRISLFQSLQSEQQARLQSLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANAL 119 (635)
Q Consensus 40 ~~~~~~~~~~~p~~~~~~~~~R~~lf~~~~~~~~~~~~~~~~~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV 119 (635)
+....+...++|+|++ +|++||++++++|++++++++.++|+|++|||+++++++|+|||+|||+++++.+++.+|
T Consensus 12 ~~~~~~~~~~~~~~~~----~r~~~f~~~~~~~~~~~~~~~~~~i~i~~~dg~~~~~~~~~tt~~~ia~~i~~~~~~~~v 87 (686)
T PLN02908 12 APSHPSDEEYLSAVIK----KRIELFEKIQARQLARLESAGGDPIKVTLPDGAVKDGKKWVTTPMDIAKEISKGLANSAL 87 (686)
T ss_pred cccCCCCcCCCchhHH----HHHHHHHHHHHHHHHHhhhccCCceEEEeCCCceEeecCCCCCHHHHHHHhCccchhhcE
Confidence 3344556678999999 999999999999999999888899999999999999999999999999999999999999
Q ss_pred EEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCH
Q 006680 120 ISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNP 199 (635)
Q Consensus 120 ~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~ 199 (635)
+|+|||++|||++||++||+|+|++|+|++|+++||||++|||++|++++||+++++||+++.++|||||+.+++.++|+
T Consensus 88 ~a~Vng~l~dL~~~l~~d~~le~l~~~~~eg~~~y~hS~ahlL~~A~~~~~~~~l~ig~~i~~~~Gfy~d~~~~~~~~t~ 167 (686)
T PLN02908 88 IAQVDGVLWDMTRPLEGDCKLKLFKFDDDEGRDTFWHSSAHILGEALELEYGCKLCIGPCTTRGEGFYYDAFYGDRTLNE 167 (686)
T ss_pred EEEECCEEeecCccccCCCeeEEeccccHHHHHHHHHHHHHHHHHHHHHHhCCeEEecCccccCCcEEEEeecCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999997568999999875568999
Q ss_pred hHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceE
Q 006680 200 DHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFG 277 (635)
Q Consensus 200 edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~ 277 (635)
+|+++||++|++|| |+||++++|++++|++||++++||++|++.+++++.|++|+||+|+|+|+||||||||+|+.|+
T Consensus 168 edl~~Ie~~m~~iI~~~~pi~r~~v~~eeA~e~F~~~~~K~~ll~~~~~~~~v~vY~~g~~~D~c~Gphv~sTg~ik~f~ 247 (686)
T PLN02908 168 EDFKPIEARAEKAVKEKQPFERIEVTREEALEMFSENKFKVEIINDLPEDATITVYRCGPLVDLCRGPHIPNTSFVKAFA 247 (686)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEEcHHHHHHHHhhCCcHHHHHhhCCCCCeeEEEEECCEEEecCCCCCCCCCccceeE
Confidence 99999999999999 9999999999999999999999999999988666789999999999999999999999999999
Q ss_pred EeecccceeccCCCCCCcceeeccccCChhhhhh----------------------------------------------
Q 006680 278 CLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH---------------------------------------------- 311 (635)
Q Consensus 278 L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e---------------------------------------------- 311 (635)
|+++++|||+|+.++++||||||++||++++|++
T Consensus 248 l~~~~~~~~lg~~~~~~lqRi~G~sfp~~~~l~~~~~~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~lP~g~~i~~~l 327 (686)
T PLN02908 248 CLKASSAYWRGDVDRESLQRVYGISFPDKKLLKEYKHRIEEAKKRDHRLLGQKQELFFFHELSPGSCFFLPHGARIYNKL 327 (686)
T ss_pred EEEecceEEcCCCcchhhEEEeeeccCChHHHHHHHhhhhhccccCHHHHHHhcCCeeecCCCCcceEEechHHHHHHHH
Confidence 9999999999999999999999999999999965
Q ss_pred ---------------------------------------------------------------------cccccceEEee
Q 006680 312 ---------------------------------------------------------------------AFAELPLRLAD 322 (635)
Q Consensus 312 ---------------------------------------------------------------------syrelPlrv~~ 322 (635)
+|+++|+++++
T Consensus 328 ~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~ 407 (686)
T PLN02908 328 MDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLAD 407 (686)
T ss_pred HHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEE
Confidence 78899999999
Q ss_pred eccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCCcCCChhhHHHHH
Q 006680 323 FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAE 402 (635)
Q Consensus 323 vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~~lg~~~~~~~a~ 402 (635)
+|.+||+|.+|.++||+|+|||+|+|+||||+++|+++|+..+++++.++|+.|||+|.+++||||++++|+.+.|++|+
T Consensus 408 ~g~~fR~E~~~~l~Gl~RvReF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~~~~~~ls~r~~~~~g~~~~w~~ae 487 (686)
T PLN02908 408 FGVLHRNELSGALTGLTRVRRFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGFTYELKLSTRPEKYLGDLETWDKAE 487 (686)
T ss_pred eeccccCCCCcCCcCccccccEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeCCccccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCc-cccccccccceee
Q 006680 403 AALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAK-TERPVMIHRAILG 481 (635)
Q Consensus 403 ~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~-~~~p~~i~~ai~G 481 (635)
..|.++|+++|++|++++|+++|||||||+.+.|+++|.|||+|+|+||++|.+|||+|||++ +. ..+|+||||||+|
T Consensus 488 ~~l~~~ld~~~~~~~~~~g~~afygpkid~~~~d~l~r~~~~~t~q~df~lp~~f~L~Y~~e~-~~~~~~pv~ihrai~G 566 (686)
T PLN02908 488 AALTEALNAFGKPWQLNEGDGAFYGPKIDITVSDALKRKFQCATVQLDFQLPIRFKLSYSAED-EAKIERPVMIHRAILG 566 (686)
T ss_pred HHHHHHHHHcCCCcEECCCceeecccceEEEEEeccCCEeeccceeecccCHhhcCCEEECCC-CCcCCCCEEEEeCceE
Confidence 999999999999999999999999999999999999999999999999999999999999977 43 5799999999999
Q ss_pred eHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeee
Q 006680 482 SVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVV 561 (635)
Q Consensus 482 gveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~ 561 (635)
|+|||+++|+||++|+||+|++|.||+|+|++++..+||.+|++.||++|++|++|.++++++||
T Consensus 567 siERli~iL~e~~~g~~p~wlsp~qv~Vipv~~~~~~~A~~va~~LR~~Gi~vevd~~~~~l~kk--------------- 631 (686)
T PLN02908 567 SVERMFAILLEHYAGKWPFWLSPRQAIVVPISEKSQDYAEEVRAQLHAAGFYVDVDVTDRKIQKK--------------- 631 (686)
T ss_pred hHHHHHHHHHHHcCCCCCCCCCCceEEEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhcC
Q 006680 562 FSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~~ 635 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.++++.++|.
T Consensus 632 -------------------ir~A~~~g~~~viivG~~E~~~~~V~vr~~~~~~q~~i~l~el~~~l~~~~~~~~ 686 (686)
T PLN02908 632 -------------------VREAQLAQYNYILVVGEAEAATGTVNVRTRDNVVHGEKKIEELLTEFKEERAEFK 686 (686)
T ss_pred -------------------HHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceeeeeHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999999999999988763
No 2
>KOG1637 consensus Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-113 Score=907.45 Aligned_cols=439 Identities=64% Similarity=1.128 Sum_probs=421.3
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHH
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILG 163 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahlL~ 163 (635)
|.| ||||+++++.+|+|||+|||.. |+++++.+++|+|||++|||++|+++|| +++++|+|++|+.+||||+|||||
T Consensus 2 ~~~-Lpdg~~~~~~~w~ttp~~ia~~-s~~la~~~~~~~vn~~~~Dl~rp~e~~~-lell~f~~~~~k~vfwhssahvlg 78 (560)
T KOG1637|consen 2 IIV-LPDGKVVEGVSWETTPYDIACQ-SKGLADDAVIAKVNGVLWDLDRPLEGDC-LELLKFDDDEGKDVFWHSSAHVLG 78 (560)
T ss_pred eee-cCCcceeeeeeccCChhHHhhh-ccchhhhhHHHhhcCceeccCCcchhhH-HHHccCCCcccceeeeehhhhHhh
Confidence 444 9999999999999999999999 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHhhcCcchhhhccc
Q 006680 164 QAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIIND 243 (635)
Q Consensus 164 ~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI~~pIer~~vsreeAle~F~~~~~K~~LL~~ 243 (635)
+|+++.||++||+||+++ +|||||+ + + .++.+|++.||.
T Consensus 79 ~a~e~~~g~~lc~Gpp~~--~gf~yd~-~-~-~i~~~d~~~~e~------------------------------------ 117 (560)
T KOG1637|consen 79 EALEQEYGAHLCIGPPIE--EGFYYDM-L-D-EISSNDFPSIEA------------------------------------ 117 (560)
T ss_pred HHHHHhcCeeEeeCCCCc--Cceehhh-h-c-cccccccccccc------------------------------------
Confidence 999999999999999999 9999999 5 3 378887776653
Q ss_pred CCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhhhh------------
Q 006680 244 LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------------ 311 (635)
Q Consensus 244 ~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e------------ 311 (635)
|||++||.||+|++++++++||++. +||++++|++
T Consensus 118 ---------------------phi~~tg~ika~k~~~nss~yw~~~------------sfp~~k~~k~~~~~~~Ea~~rd 164 (560)
T KOG1637|consen 118 ---------------------PHIRHTGKIKAFKILKNSSAYWEGD------------SFPDPKQLKEWEKFQEEAKKRD 164 (560)
T ss_pred ---------------------ccccccceeeeeeeeccchhhhccc------------cCCCHHHHHHHHhhchhhhhhh
Confidence 9999999999999999999999986 7888888854
Q ss_pred --------------------------------------------------------------------------------
Q 006680 312 -------------------------------------------------------------------------------- 311 (635)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (635)
T Consensus 165 HRkig~~qeLfff~~lSPGS~FflP~G~~iyN~Lv~fir~ey~~rGf~EVitPniy~~~LWe~SGHwqnY~enmF~~e~e 244 (560)
T KOG1637|consen 165 HRKIGKEQELFFFHELSPGSCFFLPHGTRIYNTLVDFIRAEYRKRGFTEVITPNIYNKKLWETSGHWQNYSENMFKFEVE 244 (560)
T ss_pred hhhhhhhhhheeeccCCCcceeeccCcchHHHHHHHHHHHHHHhcCCceecCcchhhhhhhhhccchhhhhhhceeeeec
Confidence
Q ss_pred -----------------------cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHH
Q 006680 312 -----------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEF 368 (635)
Q Consensus 312 -----------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~ 368 (635)
|||++|+|++++|.+||+|.+|.++||+|+|+|+|||+||||+++|+++||.+|++|
T Consensus 245 ke~~~LKPMNCPgHcLmf~~r~rS~reLPlR~aDFg~LHRnE~SGaLsGLTRvRrFqQDDaHIFCt~~Qi~~Eik~~l~f 324 (560)
T KOG1637|consen 245 KEEFALKPMNCPGHCLMFAHRDRSYRELPLRFADFGVLHRNEASGALSGLTRVRRFQQDDAHIFCTPDQVKEEIKGCLDF 324 (560)
T ss_pred hhhhccCccCCCccccccccCCccHhhCCccccCcceeeeccccccccccceeeeecccCceEEecCccHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCeEEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee
Q 006680 369 IDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ 448 (635)
Q Consensus 369 ~~~~~~~~G~~~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ 448 (635)
++++|..|||+|++.|||||++++|+.++|++||..|+++|+++|.||.+|+|||||||||||+.+.|+++|.+||+|+|
T Consensus 325 l~~vY~~fgf~f~l~lSTRPe~~lG~l~~Wd~AE~~L~~al~e~g~pw~lN~GDGAFYGPKIDi~l~Dal~r~hQcaTIQ 404 (560)
T KOG1637|consen 325 LDYVYGVFGFTFKLNLSTRPEKFLGDLETWDEAEFKLEEALNESGEPWVLNPGDGAFYGPKIDITLDDALGRKHQCATIQ 404 (560)
T ss_pred HHHHHHhccccceeEeccChHHhccCHHHHHHHHHHHHHHHHHhCCCceecCCCcccccceeeeEhhhhcCcccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHH
Q 006680 449 LDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIY 528 (635)
Q Consensus 449 ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~ 528 (635)
||||+|.||+|.|.+++ +..++||||||||+||+|||+|+|+|||+|+||+|+||+|+.||||++....||.+|+.+|+
T Consensus 405 LDFqLP~rFdL~y~~~~-g~~erPVmIHRAIlGSvERmiaiL~E~~~gkwPFWlSPRq~~vIpVse~~~~ya~~V~~ql~ 483 (560)
T KOG1637|consen 405 LDFQLPIRFDLEYETED-GDLERPVMIHRAILGSVERMIAILLESYGGKWPFWLSPRQAVVIPVSEGPLDYATSVQKQLE 483 (560)
T ss_pred ecccChhhcCceeeccc-ccccchhhHHHHHhhhHHHHHHHHHHHhCCCCCeeeccceEEEEECCCcchhHHHHHHHHHH
Confidence 99999999999999988 77999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEE
Q 006680 529 RAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVR 608 (635)
Q Consensus 529 ~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr 608 (635)
++|+++|+|.++.+|+|| +|.|++++|||++|||++|++.++|+||
T Consensus 484 ~a~f~~Dld~t~~tl~kk----------------------------------ir~Aqla~yn~i~VVGdkE~~~~~vnVr 529 (560)
T KOG1637|consen 484 EAGFYVDLDPTDSTLRKK----------------------------------IRNAQLAHYNFIFVVGDKEVETGRVNVR 529 (560)
T ss_pred hhhceeecCCccchHHHH----------------------------------HhhhhhcceeEEEEEchhhhhcCceeee
Confidence 999999999999999999 9999999999999999999999999999
Q ss_pred EcC---CCceecccHHHHHHHHHHHHHhc
Q 006680 609 VRD---QGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 609 ~~~---~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
.|+ +..+..++++++++.++++.+++
T Consensus 530 ~Rd~~~~~~~~~~tie~~~~~~~~l~~~~ 558 (560)
T KOG1637|consen 530 TRDNRDNKTESEMTIEELSDEFKELKSEY 558 (560)
T ss_pred ccccccccccceeeHHHHHHHHHHhHhhc
Confidence 984 55688999999999999887653
No 3
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=5.7e-105 Score=912.86 Aligned_cols=516 Identities=44% Similarity=0.815 Sum_probs=495.6
Q ss_pred CCCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHH
Q 006680 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAH 160 (635)
Q Consensus 81 ~~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ah 160 (635)
..+|+|+++||+.++++. |||+++||+.+++.+..++|+|+|||++|||+++++.||+|+|++++|++|.++||||++|
T Consensus 3 ~~mi~i~~~~~~~~~~~~-g~t~~~ia~~~~~~~~~~iv~a~vn~~l~dL~~~i~~d~~i~fv~~~~~~g~~iy~hS~~h 81 (639)
T PRK12444 3 EQMIEIKFPDGSVKEFVK-GITLEEIAGSISSSLKKKAVAGKVNDKLYDLRRNLEEDAEVEIITIDSNEGVEIARHSAAH 81 (639)
T ss_pred CCCeEEEeCCCCEEEecC-CCCHHHHHHHhhhhcchheEEEEECCEEEEcCcccCCCCeEEEecCCChHHHHHHHHHHHH
Confidence 356999999999999888 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC-CceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhc--Cc
Q 006680 161 ILGQAIEQQYG-CKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NN 235 (635)
Q Consensus 161 lL~~Av~~lfg-~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~--~~ 235 (635)
||++|++++|+ ..+.++|+++ +|||||+.. +.++|++|+.+||++|+++| |+||++.+++++||+++|++ ++
T Consensus 82 lL~~A~~~~~~~~~~~i~~~~~--~g~y~d~~~-~~~it~edl~~Ie~~m~eiI~~~~pI~~~~v~~eeA~~~F~~~~~~ 158 (639)
T PRK12444 82 ILAQAVKRLYGDVNLGVGPVIE--NGFYYDMDL-PSSVNVEDLRKIEKEMKKIINENIKIERVEVSREEAAKLFQEMNDR 158 (639)
T ss_pred HHHHHHHHHcCCcEEEeCCcCC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHhhcCCc
Confidence 99999999995 5799999998 999999986 46799999999999999999 99999999999999999997 45
Q ss_pred chhhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhhhh----
Q 006680 236 FKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH---- 311 (635)
Q Consensus 236 ~K~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e---- 311 (635)
+|++|++.++..+.|++|+||+++|+|+||||||||+|+.|+|+++++|||+|+++++.+|||||++||++++|.+
T Consensus 159 ~K~~ll~~~~~~~~v~iy~~~~~~D~c~G~hv~sTg~ik~f~l~~~~~g~~~g~~~~~~l~Ri~g~a~~~~~~l~~~~~~ 238 (639)
T PRK12444 159 LKLELLEAIPSGESITLYKQGEFVDLCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELEEYLHF 238 (639)
T ss_pred hHHHHHhcCCCCCeEEEEEECCEEEEcCCcCCCCCCCCceeEEEEEcceEEcCCCCCcceEEEEEEecCCHHHHHHHHHH
Confidence 7999999876556799999999999999999999999999999999999999999999999999999999999954
Q ss_pred --------------------------------------------------------------------------------
Q 006680 312 -------------------------------------------------------------------------------- 311 (635)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (635)
T Consensus 239 ~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~ 318 (639)
T PRK12444 239 VEEAAKRNHRKLGKELELFMFSEEAPGMPFYLPKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKD 318 (639)
T ss_pred HHHhccCCHHHHHHHcCCcccccccCcceEEeeCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhh
Confidence
Q ss_pred -------------------------------cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHH
Q 006680 312 -------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKD 360 (635)
Q Consensus 312 -------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~ 360 (635)
+|+++|++++++|.+||+|++|.+.||+|+|||+|+|+|+||+++|+++
T Consensus 319 emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~f~~~~~~~~ 398 (639)
T PRK12444 319 NMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHLFVTPDQIED 398 (639)
T ss_pred hcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEEECCHHHHHH
Confidence 7889999999999999999999899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCeEEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhh
Q 006680 361 EVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR 440 (635)
Q Consensus 361 E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r 440 (635)
|+..+++++.++|+.||++|.+.+|+||+|++|+.+.|+.++..|.++|+..|++|.+|+|+|+||||++|+.+.|+.++
T Consensus 399 e~~~~~~~~~~i~~~lgl~~~~~~~~r~~~~~G~~e~~~~~~~~l~~~l~~~~~~y~~~~~~ga~Y~~~~e~~~~~~~~~ 478 (639)
T PRK12444 399 EIKSVMAQIDYVYKTFGFEYEVELSTRPEDSMGDDELWEQAEASLENVLQSLNYKYRLNEGDGAFYGPKIDFHIKDALNR 478 (639)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEECCccccCCCHHHHHHHHHHHHHHHHHcCCCceeccCCcccccceEEEEeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCC-CcHHH
Q 006680 441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSE-KSQPY 519 (635)
Q Consensus 441 ~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~-~~~~~ 519 (635)
.++|+|.|+||++|.+|||.|.+.+ ++..+|+|+|+|++||+||++++|+|+++|.||.|++|.||+|+|+++ +..++
T Consensus 479 ~~~~~t~~~d~~~~~~f~l~~~~~~-g~~~~P~i~~~~~~g~ieRli~~L~e~~~~~~p~~~ap~qV~Ii~~~~~~~~~~ 557 (639)
T PRK12444 479 SHQCGTIQLDFQMPEKFDLNYIDEK-NEKRRPVVIHRAVLGSLDRFLAILIEHFGGAFPAWLAPVQVKVIPVSNAVHVQY 557 (639)
T ss_pred hhcccceeeecccccccceEEECCC-CCccccEEEEECCCCCHHHHHHHHHHhcCCCCCCccCCceEEEEEcccHHHHHH
Confidence 9999999999999999999999887 778899999999999999999999999889999999999999999998 68999
Q ss_pred HHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccc
Q 006680 520 ALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEE 599 (635)
Q Consensus 520 a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E 599 (635)
|.+|++.||++|++|++|.++++++|| +++|++.|+||++|||++|
T Consensus 558 a~~la~~LR~~Gi~veid~~~~sl~kq----------------------------------~k~A~k~g~~~~iiiG~~E 603 (639)
T PRK12444 558 ADEVADKLAQAGIRVERDERDEKLGYK----------------------------------IREAQMQKIPYVLVIGDKE 603 (639)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCHHHH----------------------------------HHHHHHcCCCEEEEEcchh
Confidence 999999999999999999999999999 9999999999999999999
Q ss_pred cccCeEEEEEcCCCceecccHHHHHHHHHHHHHhcC
Q 006680 600 AKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 600 ~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~~ 635 (635)
.++|+|+||+|++++|..++++++++.+++.+++|.
T Consensus 604 ~~~~~v~vr~~~t~~q~~i~l~el~~~l~~~~~~~~ 639 (639)
T PRK12444 604 MENGAVNVRKYGEEKSEVIELDMFVESIKEEIKNRK 639 (639)
T ss_pred hhcCeEEEEECCCCceeeeeHHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999988874
No 4
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.5e-98 Score=858.18 Aligned_cols=514 Identities=48% Similarity=0.863 Sum_probs=488.8
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHH
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahlL 162 (635)
+|+|+++||+.++++. ||||.|+|+.++......+|+|+|||+++||+++++.||+|+|+++++++|+++||||++|||
T Consensus 1 ~~~i~~~~g~~~~~~~-gtt~~dia~~~~~~~~~~~v~a~vng~l~dL~~~l~~d~~Vefi~~~~~~g~~~y~hS~~hll 79 (638)
T PRK00413 1 MIKITLPDGSVREFEA-GVTVADVAASISPGLAKAAVAGKVNGELVDLSTPIEEDASLEIITAKDEEGLEIIRHSAAHLL 79 (638)
T ss_pred CcEEEeCCCCEEEeCC-CCCHHHHHHHhhhhchhheEEEEECCEEeeCCccccCCCceeeeeccchhhHHHHhhhHHHHH
Confidence 3889999999899888 999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhc--Ccch
Q 006680 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (635)
Q Consensus 163 ~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~--~~~K 237 (635)
++|++++| ++.+.++|+++ +|||||+.. +.++|++|+++||++|+++| |+||++.++++++|+++|++ +++|
T Consensus 80 ~~A~~~~~~~~~~~~~~~~~--~g~y~d~~~-~~~lt~e~l~~Ie~~m~~iI~~~~pi~~~~v~~~eA~~~f~~~~~~~k 156 (638)
T PRK00413 80 AQAVKRLYPDAKLTIGPVIE--NGFYYDFDR-ERPFTPEDLEAIEKEMKEIIKENYPIEREVVSREEAIELFKDRGEPYK 156 (638)
T ss_pred HHHHHHHcCCceEEECCccC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecHHHHHHHHHhcCCccH
Confidence 99999999 67899999999 999999986 56799999999999999999 99999999999999999998 5679
Q ss_pred hhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhhhh------
Q 006680 238 VEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------ 311 (635)
Q Consensus 238 ~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e------ 311 (635)
++|+++++.+..|++|+||+|+|+|+||||||||+|+.|+|.++++|||+++.+++.++||||++||++++|.+
T Consensus 157 ~~ll~~~~~~~~v~iy~~~~~~d~c~G~hv~~Tg~i~~f~i~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l~~~~~~~~ 236 (638)
T PRK00413 157 VELIEEIPEDEEISLYRQGEFVDLCRGPHVPSTGKIKAFKLLKVAGAYWRGDSKNKMLQRIYGTAFADKKELDAYLHRLE 236 (638)
T ss_pred HHHhhcCCCCCeEEEEEECCEEEECCCCCCCcccCCceeEEEEEcceEEcCCCcchheEEEEeeecCCHHHHHHHHHHHH
Confidence 99999886555899999999999999999999999999999999999999999999999999999999998843
Q ss_pred --------------------------------------------------------------------------------
Q 006680 312 -------------------------------------------------------------------------------- 311 (635)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (635)
T Consensus 237 e~~~~~h~~l~~~~~~~~~~~~~~G~~~~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~m 316 (638)
T PRK00413 237 EAKKRDHRKLGKELDLFHFQEEAPGLPFWHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENM 316 (638)
T ss_pred HhccccHHHHHHhcCEEEecCCCCcceEEcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhcc
Confidence
Q ss_pred ------------------------------cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHH
Q 006680 312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (635)
Q Consensus 312 ------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E 361 (635)
+|+++|+|++++|.+||+|.+|.+.|++|+|||+|+|+|+||.++++.+|
T Consensus 317 y~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~~~~~~e 396 (638)
T PRK00413 317 FPTTESDGEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTPEQIEEE 396 (638)
T ss_pred ceeecCCCcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCHHHHHHH
Confidence 56789999999999999999999999999999999999999999997777
Q ss_pred HHHHHHHHHHHHHHhCCe-EEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhh
Q 006680 362 VRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR 440 (635)
Q Consensus 362 ~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r 440 (635)
+..++.++.++|+.||++ +.+++|+||++++|+.++|+++++.|.++|++.|.+|..++++++||||++++.+.+++++
T Consensus 397 ~~eii~l~~~~~~~lg~~~~~i~l~~r~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (638)
T PRK00413 397 VKKVIDLILDVYKDFGFEDYEVKLSTRPEKRIGSDEMWDKAEAALKEALDELGLDYEIAPGEGAFYGPKIDFQLKDALGR 476 (638)
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEecCCcccCCCHHHHHHHHHHHHHHHHHcCCCceecCCccccccceEEEEeecCCCC
Confidence 777999999999999995 9999999999999999999999999999999999999999999999999999989999999
Q ss_pred hhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHH
Q 006680 441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYA 520 (635)
Q Consensus 441 ~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a 520 (635)
.++|+|+|+||++|.+|||.|.+.+ ++..+|+|||++++||+||++++|.|+++|.||+|++|.||+|+|++++..++|
T Consensus 477 ~~~l~~~~~d~~~~~~~dl~Yt~~~-~~~~~p~~i~~~~~g~~eRli~~l~e~~~~~~p~~~~p~~v~Ii~~~~~~~~~a 555 (638)
T PRK00413 477 EWQCGTIQLDFNLPERFDLTYVGED-GEKHRPVMIHRAILGSMERFIGILIEHYAGAFPTWLAPVQVVVLPITDKHADYA 555 (638)
T ss_pred eEEeccEeecccChhhcCCEEECCC-CCccCcEEEEecceehHHHHHHHHHHHcCCCCCcccCcceEEEEEeChhHHHHH
Confidence 9999999999999999998886654 666789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEccccc
Q 006680 521 LQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEA 600 (635)
Q Consensus 521 ~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~ 600 (635)
.+|++.||++|++|++|+++++++|| +++|++.|+||++|||++|.
T Consensus 556 ~~i~~~Lr~~gi~v~~d~~~~~l~kk----------------------------------i~~A~~~g~~~~iiiG~~E~ 601 (638)
T PRK00413 556 KEVAKKLKAAGIRVEVDLRNEKIGYK----------------------------------IREAQLQKVPYMLVVGDKEV 601 (638)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHhHH----------------------------------HHHhhccCCCEEEEEcchhh
Confidence 99999999999999999999999999 99999999999999999999
Q ss_pred ccCeEEEEEcCCCceecccHHHHHHHHHHHHHhcC
Q 006680 601 KSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 601 ~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~~ 635 (635)
++|+|+||+|++++|..++++++++.+++++++|.
T Consensus 602 ~~~~v~vr~~~~~~q~~i~~~~l~~~i~~~~~~~~ 636 (638)
T PRK00413 602 EAGTVSVRRRGGKDLGTMSLDEFIERLLEEIASRS 636 (638)
T ss_pred hcCeEEEEECCCCccceeeHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999988763
No 5
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.3e-97 Score=827.76 Aligned_cols=463 Identities=47% Similarity=0.823 Sum_probs=445.6
Q ss_pred eEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCC
Q 006680 118 ALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGL 197 (635)
Q Consensus 118 iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~i 197 (635)
++++++|| .||+.. ..+++.++ +|..+.|||+||||+.|+.++|.. +++||.++ +|||||++. +.++
T Consensus 2 ~~~~~~~~-~~~~~~-------~~~~~~~~-~~~~~~rhs~ah~l~~av~~l~p~-~~~gp~ie--~gfyyd~~~-~~~~ 68 (589)
T COG0441 2 ALAIHVDG-ELDLKD-------EIITAEDE-EGLEIIRHSCAHVLAQAVKRLYPD-VTIGPVIE--EGFYYDFDV-KEPI 68 (589)
T ss_pred ceEEEccc-ceeccc-------cccCccCc-cchhhhhhHHHHHHHHHHHHhCCC-ccccCccc--ceeEEeecc-CCCC
Confidence 57889999 999987 33445555 999999999999999999999955 99999999 999999987 5569
Q ss_pred CHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccc
Q 006680 198 NPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKG 275 (635)
Q Consensus 198 t~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~ 275 (635)
|++|+.+||++|++++ ++||++..+++|+|++.|+ +||+.+|+.++ ..+++|+.|+|.|+|.|||+||||.| +
T Consensus 69 ~~~dl~~ie~~m~~i~~~~~~~~~~~~~~e~a~~~f~--~yK~~~i~~~~--~~~s~y~~~~~~dlc~gph~~~t~~i-~ 143 (589)
T COG0441 69 TPEDLLKIEKEMKEIAKENLPIEREVVSREEARAPFG--PYKAELIDCKG--HPLSEYSQGEFVDLCRGPHVPSTGKI-A 143 (589)
T ss_pred CHHHHHHHHHHHHHHHHhcCceEEEEecHHHHHHHhh--hhHHHHHhcCC--CCceeEecCccccccCCCCCCccceE-E
Confidence 9999999999999999 9999999999999999999 99999999985 68999999999999999999999999 9
Q ss_pred eEEeecccceeccCCCCCCcceeeccccCChhhhhh--------------------------------------------
Q 006680 276 FGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-------------------------------------------- 311 (635)
Q Consensus 276 F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e-------------------------------------------- 311 (635)
|++++.+++||+|+++++++|||||++|++++.|.+
T Consensus 144 fkl~~~~~ayw~g~~~~~~l~riygta~~~~~~l~~~l~~~eea~krdHrklg~el~LF~~~~~~~~G~~~~~pkG~~ir 223 (589)
T COG0441 144 FKLLKLAGAYWRGDENNEMLQRIYGTAFADKKELEAYLKRLEEAKKRDHRKLGKELDLFSFSPEEGPGLPFWHPKGATIR 223 (589)
T ss_pred EEEEEecchhhccCCCCcceeEEeccccCCHHHHHHHHhhhhhccCCchHhHHHhhcceeeccccCCcceEECCCcccHH
Confidence 999999999999999999999999999999999953
Q ss_pred ------------------------------------------------------------------------cccccceE
Q 006680 312 ------------------------------------------------------------------------AFAELPLR 319 (635)
Q Consensus 312 ------------------------------------------------------------------------syrelPlr 319 (635)
|||++|+|
T Consensus 224 ~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r 303 (589)
T COG0441 224 NLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLR 303 (589)
T ss_pred HHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceeccchh
Confidence 99999999
Q ss_pred EeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCCcCCChhhH
Q 006680 320 LADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATW 398 (635)
Q Consensus 320 v~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~~lg~~~~~ 398 (635)
++++|.+||+|.+|.+.||+|+|.|+|+|+||||+++|+.+|+.++++++..+|+.|||+ |++++|+|| +++|+.+.|
T Consensus 304 ~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r~-k~ig~d~~W 382 (589)
T COG0441 304 LAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTRP-KFIGSDEMW 382 (589)
T ss_pred hhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCC-cccCChhhh
Confidence 999999999999999999999999999999999999999999999999999999999997 999999999 999999999
Q ss_pred HHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccc
Q 006680 399 EKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRA 478 (635)
Q Consensus 399 ~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~a 478 (635)
++|+++|.++|++.+.+|..++|+|||||||+|+.+.|+++|.|||+|+|+||++|.||+|.|.+++ +..++|||||||
T Consensus 383 ~~a~~~l~~al~~~~~~~~~~~G~~aFyGPKid~~v~Dalgr~~q~~TIQlDf~lpeRF~l~Yv~~d-~~~~~PvmiHra 461 (589)
T COG0441 383 DKAEAALREALKEIGVEYVEEPGEGAFYGPKIDFQVKDALGREWQLGTIQLDFNLPERFDLEYVDED-GEKKRPVIIHRA 461 (589)
T ss_pred HHHHHHHHHHHHhhCceeeecCCceEEECcccceEEEeccCcceecceEEEecCChhhceEEEEcCC-CCccCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 677899999999
Q ss_pred eeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCccccccccee
Q 006680 479 ILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYI 558 (635)
Q Consensus 479 i~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~ 558 (635)
++||+||++++|+||++|.||+||||.||.|+||+++..+||.+|++.|+++|++|++|+++.+++||
T Consensus 462 i~GSiERfi~iLiE~~~G~~P~WLaPvQv~VipV~~~~~~ya~~v~~~L~~~giRvdvD~~~e~l~kK------------ 529 (589)
T COG0441 462 ILGSIERFIGILLEHYAGALPTWLAPVQVRVIPVADEHLDYAKEVAEKLRKAGIRVDIDDRNEKLGKK------------ 529 (589)
T ss_pred cchhHHHHHHHHHHhccCCCcccCCccEEEEEEeChHHHHHHHHHHHHHHHcCCeeeecccccchHHH------------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 559 EVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
||+|+..++||++|||++|+++++|+||.|+++++..|+++++++.+++..+.+
T Consensus 530 ----------------------IR~a~~~kipyiiVvG~kE~e~~~v~vR~r~~~~~~~~~l~e~i~~ik~e~~~~ 583 (589)
T COG0441 530 ----------------------IREAGTQKIPYVIVVGDKEVETGTVVVRRRGGKQQKSMTLEELVEELKKEIEGR 583 (589)
T ss_pred ----------------------HHHHHhcCCCEEEEEchhhhccCceEEEEccCCccccccHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999988765
No 6
>PLN02837 threonine-tRNA ligase
Probab=100.00 E-value=2.4e-92 Score=803.47 Aligned_cols=457 Identities=40% Similarity=0.755 Sum_probs=439.2
Q ss_pred CCCeEEeeCCChhHHHHHHHHHHHHHHHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--
Q 006680 137 DCDLKLFTFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA-- 213 (635)
Q Consensus 137 d~~lefl~f~s~eG~~vy~hS~ahlL~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI-- 213 (635)
..+|+++++++.+|..++|||++|||++|++++| +..+.+||+++ +||||||.. .++|++|+++||++|+++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~HSa~HLL~~Av~~l~~~~~~~ig~~~~--~g~y~D~~~--~~lt~edl~~IEk~m~~iI~~ 104 (614)
T PLN02837 29 PERVVLPTNESSEKLLKIRHTCAHVMAMAVQKLFPDAKVTIGPWIE--NGFYYDFDM--EPLTDKDLKRIKKEMDRIISR 104 (614)
T ss_pred CceEEEEeccChhhHHHHHHHHHHHHHHHHHHHcCCcEEEECCccC--CCEEEEecC--CCCCHHHHHHHHHHHHHHHHc
Confidence 4689999999999999999999999999999999 57899999999 999999985 4899999999999999999
Q ss_pred cCCeEEEEeCHHHHHHHhhc--CcchhhhcccCCCCCeEEEEEeCC-eEeecCCCCCCCCccc--cceEEeecccceecc
Q 006680 214 KQPFERIEVTRDQALEMFSD--NNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFV--KGFGCLKASSAYWRG 288 (635)
Q Consensus 214 ~~pIer~~vsreeAle~F~~--~~~K~~LL~~~~~~~~v~vYr~g~-~iDlc~GPhVpsTG~I--k~F~L~k~s~g~~L~ 288 (635)
|+||++.+++++||+++|.. +++|.+|++.. +.+.|++|+||| ++|+|+||||||||+| ++|+|++.++.||++
T Consensus 105 n~pI~~~~v~~eEA~~~f~~~~~~~k~~Ll~~~-~~~~Iriy~ig~~~~D~c~GpHv~sTg~I~~~~~kl~~~~g~ywrg 183 (614)
T PLN02837 105 NLPLVREEVSREEAQKRIMAINEPYKLEILEGI-KEEPITIYHIGEEWWDLCAGPHVERTGKINKKAVELESVAGAYWRG 183 (614)
T ss_pred CCCEEEEEecHHHHHHHHHHcCCchhHHHhccC-CCCeEEEEEECCeEEEecCCCCcccccccccceEEEEEeehhhhcc
Confidence 99999999999999999985 46799999876 456899999997 8999999999999999 999999999999999
Q ss_pred CCCCCCcceeeccccCChhhhhh---------------------------------------------------------
Q 006680 289 NKDRESLQRVYGISYPDKKRLKH--------------------------------------------------------- 311 (635)
Q Consensus 289 ~p~~~~lqRIyG~~fp~~~~L~e--------------------------------------------------------- 311 (635)
+.++..+|||||++||++++|.+
T Consensus 184 ~~~~~~l~ri~g~~~~~~~~l~~~~~~~~e~~~rdH~~lg~~l~lf~~~~~~g~G~~~~~p~G~~l~~~L~~~~~~~~~~ 263 (614)
T PLN02837 184 DEKNQMLQRIYGTAWESEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDSWKKMHFE 263 (614)
T ss_pred cccCcceEEEEEEecCCHHHHHHHHHHHHHhhhCCHHHHHHHcCCcccCcCcCCcceEEechHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999954
Q ss_pred ------------------------------------------------------------cccccceEEeeecccccccc
Q 006680 312 ------------------------------------------------------------AFAELPLRLADFGVLHRNEA 331 (635)
Q Consensus 312 ------------------------------------------------------------syrelPlrv~~vG~lnR~E~ 331 (635)
|||+||++++++|.+||+|.
T Consensus 264 ~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~ 343 (614)
T PLN02837 264 HGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYEL 343 (614)
T ss_pred CCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCC
Confidence 89999999999999999999
Q ss_pred CCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCCcCCChhhHHHHHHHHHHHHH
Q 006680 332 SGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALN 410 (635)
Q Consensus 332 ~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~ 410 (635)
+|.+.||+|+|||+|+|+|+||+++|+++|+..+++++.++|+.|||+ +.+.+++||++++|+++.|++++..|+++|+
T Consensus 344 ~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~~~~~~g~~~~w~~~~~~l~~~l~ 423 (614)
T PLN02837 344 SGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTRPEKSVGSDDIWEKATTALRDALD 423 (614)
T ss_pred CCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCCchhccCCHHHHHHHHHHHHHHHH
Confidence 998999999999999999999999999999999999999999999998 8899999999999999999999999999999
Q ss_pred HcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHH
Q 006680 411 EFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAIL 490 (635)
Q Consensus 411 ~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l 490 (635)
+.|.+|.+++|+|||||||+|+.+.|++||.|||+|+||||++|.+|+|.|.+.+ ++..+|+|||||++||+||++++|
T Consensus 424 ~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~tiqldf~~~~~f~l~y~~~d-~~~~~pv~ih~~~~G~~eRlia~L 502 (614)
T PLN02837 424 DKGWEYKVDEGGGAFYGPKIDLKIEDALGRKWQCSTIQVDFNLPERFDITYVDSN-SEKKRPIMIHRAILGSLERFFGVL 502 (614)
T ss_pred HcCCCceeCCCcccccCcceeeEeeccCCceeeecceeEeecchhhcCcEEECCC-CCccCCEEEEcCCccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988 778899999999999999999999
Q ss_pred HHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhc
Q 006680 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVA 570 (635)
Q Consensus 491 ~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~ 570 (635)
+|+++|.||+|++|.||+|+|++++..+||.+|++.||++|++|++| .+++++||
T Consensus 503 ie~~~g~~P~~laP~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev~-~~~slgkk------------------------ 557 (614)
T PLN02837 503 IEHYAGDFPLWLAPVQARVLPVTDNELEYCKEVVAKLKAKGIRAEVC-HGERLPKL------------------------ 557 (614)
T ss_pred HHHcCCCCCCCCCCccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEe-CCCCHHHH------------------------
Confidence 99999999999999999999999999999999999999999999995 57899999
Q ss_pred ccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 571 GINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 571 ~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.+++..++|
T Consensus 558 ----------ir~A~~~gip~~IiIG~~E~e~~~VtVr~r~~geq~~v~~~el~~~l~~~~~~~ 611 (614)
T PLN02837 558 ----------IRNAETQKIPLMAVVGPKEVETRTLTVRSRHGGELGTMPVDDFINRIQLAVENR 611 (614)
T ss_pred ----------HHHHHHcCCCEEEEEcchhhhcCEEEEEECCCCceeEeeHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999998876
No 7
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=6.5e-90 Score=780.27 Aligned_cols=451 Identities=47% Similarity=0.863 Sum_probs=431.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEe
Q 006680 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEV 222 (635)
Q Consensus 146 ~s~eG~~vy~hS~ahlL~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~v 222 (635)
++++|.++||||++|||++|++++| +..+.++|+++ +||||||.. +.++|++|+.+||++|+++| |+||++.++
T Consensus 1 ~~~~g~~~~~hS~~hlL~~A~~~~~~~~~~~~~~~~~--~g~~~d~~~-~~~it~e~l~~Ie~~m~~lI~~~~pi~~~~v 77 (575)
T PRK12305 1 DSPDGLEVIRHSAAHVLAQAVQELFPDAKLGIGPPIE--DGFYYDFDV-PEPFTPEDLKKIEKKMKKIIKRGLPFEREEV 77 (575)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCceEEeCCCcC--CeEEEEeeC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 5789999999999999999999999 57899999998 999999986 46799999999999999999 999999999
Q ss_pred CHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccc
Q 006680 223 TRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGIS 302 (635)
Q Consensus 223 sreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~ 302 (635)
++++|+++|+++++|.+|++..++ +.|++|+||+++|+|+||||||||+|+.|+|+++++|||+|+++++.+|||||++
T Consensus 78 ~~eeA~~~f~~~~~k~~l~~~~~~-~~vri~~ig~~~d~c~Gthv~~T~~i~~f~i~~~~~~~~~~~~~~~~l~Ri~g~~ 156 (575)
T PRK12305 78 SREEAREEFANEPYKLELIDDIPE-EGITIYDNGDFEDLCRGPHVPNTKFIKAFKLTSVAGAYWRGDEKNPQLQRIYGTA 156 (575)
T ss_pred cHHHHHHhCCcChhHHHhhhhcCC-CeEEEEEECCEEEECCCCCCCCccCCceeEEEEEcceEECCCCCCcceEEEEEEe
Confidence 999999999998999999998754 5899999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhhhh-----------------------------------------------------------------------
Q 006680 303 YPDKKRLKH----------------------------------------------------------------------- 311 (635)
Q Consensus 303 fp~~~~L~e----------------------------------------------------------------------- 311 (635)
||++++|.+
T Consensus 157 ~~~~~~l~~~~~~~~e~~~~dh~~l~~~~~l~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~ 236 (575)
T PRK12305 157 WETKEELKEYLKRLEEAKKRDHRKLGKELDLFSFPDEIGPGLPVWHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKS 236 (575)
T ss_pred cCCHHHHHHHHHHHHHhhhccHHHHHHhcCccccccccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCH
Confidence 999999954
Q ss_pred ----------------------------------------------cccccceEEeeeccccccccCCCCcCceeeceee
Q 006680 312 ----------------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ 345 (635)
Q Consensus 312 ----------------------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~ 345 (635)
+|+++|+|++++|.+||+|.+|.++|++|+|||+
T Consensus 237 ~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~ 316 (575)
T PRK12305 237 DLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFT 316 (575)
T ss_pred HHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeE
Confidence 6778999999999999999999899999999999
Q ss_pred ecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC-CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCC
Q 006680 346 QDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP-EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDG 423 (635)
Q Consensus 346 Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~-~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~ 423 (635)
|+|+|+||.++++.+|+..+++++.++|+.||++ +.+.+|+|| ++++|+.+.|+++++.+.++|+..|++|.++++++
T Consensus 317 q~~~~if~~~~~~~~e~~e~i~l~~~~~~~lgl~~~~i~l~~r~~~~~~g~~~~~~~~~~~l~~~l~~~g~~~~~~~~~~ 396 (575)
T PRK12305 317 QDDAHIFCTPDQIEDEILKVLDFVLELLKDFGFKDYYLELSTREPEKYVGDDEVWEKATEALREALEELGLEYVEDPGGA 396 (575)
T ss_pred EcceEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhccCCHHHHHHHHHHHHHHHHhcCCCcEecCCCc
Confidence 9999999999998888888999999999999998 999999999 89999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCC
Q 006680 424 AFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLS 503 (635)
Q Consensus 424 af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~ls 503 (635)
+||||++|+.+.|++++.|||+|+|+||++|.+||+.|.+.+ +...+|+|||||++||+||++++|.|+++|+||.|++
T Consensus 397 ~~y~~~~~~~~~d~~g~~~~~~t~~~~~~~~~~fdl~y~~~~-~~~~~p~~ih~~~~G~~eRl~~~l~e~~~~~~p~~~~ 475 (575)
T PRK12305 397 AFYGPKIDVQIKDALGREWQMSTIQLDFNLPERFDLEYTAED-GKRQRPVMIHRALFGSIERFIGILTEHYAGAFPFWLA 475 (575)
T ss_pred ccccccEEEEeeccCCCceeccceeeecccHhhCCCEEECCC-CCccCceEEEccccccHHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999999999999999999998776 6778899999999999999999999999999999999
Q ss_pred CceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHH
Q 006680 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVRE 583 (635)
Q Consensus 504 p~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 583 (635)
|.||+|+|++++..++|.+|++.||++|++|++|.++.+++|| +++
T Consensus 476 p~~v~Ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kk----------------------------------~~~ 521 (575)
T PRK12305 476 PVQVVIIPVADAHNEYAEEVAKKLRAAGIRVEVDTSNERLNKK----------------------------------IRN 521 (575)
T ss_pred CccEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH----------------------------------HHH
Confidence 9999999999999999999999999999999999999999999 999
Q ss_pred HhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhcC
Q 006680 584 AQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 584 A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~~ 635 (635)
|++.|+||++|||++|.++|+|+||+|+++++..++++++++.+++++++|.
T Consensus 522 A~~~g~p~~iivG~~E~~~~~v~vr~~~~~~q~~v~~~~l~~~l~~~~~~~~ 573 (575)
T PRK12305 522 AQKQKIPYMLVVGDKEVEAGTVSVRTRDGEQLNGMPLDEFIELIKEKIAERE 573 (575)
T ss_pred HHhcCCCEEEEEechhhhCCEEEEEEcCCCceeeeeHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999988763
No 8
>TIGR00418 thrS threonyl-tRNA synthetase. This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..
Probab=100.00 E-value=3.9e-81 Score=706.88 Aligned_cols=438 Identities=47% Similarity=0.873 Sum_probs=416.0
Q ss_pred HHHHHHHHHHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHh
Q 006680 155 WHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMF 231 (635)
Q Consensus 155 ~hS~ahlL~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F 231 (635)
|||++|||++|++++| +..+.++++++ +||||||.. +.++|++++.+||++|+++| |+||++..+++++|+++|
T Consensus 1 ~HS~~hLl~~Al~~~~~~~~~~~~~~i~--~g~~~df~~-~~~~t~eel~~Ie~~m~~lI~~~~pi~~~~~~~eeA~~~f 77 (563)
T TIGR00418 1 RHSIAHLLAEALKQLYPDVKLAIGPVVE--DGFYYDFEL-DRSFTQEDLEKIEKDMKEIAKKNYPVAKLSVSLEEALEAF 77 (563)
T ss_pred CChHHHHHHHHHHHHcCCcEEEEcCCcC--CCceecccC-CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEECHHHHHHHH
Confidence 8999999999999999 57799999999 999999975 56799999999999999999 999999999999999999
Q ss_pred h-cCcchhhhcccCCCCCeEEEEEeCC-eEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhh
Q 006680 232 S-DNNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRL 309 (635)
Q Consensus 232 ~-~~~~K~~LL~~~~~~~~v~vYr~g~-~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L 309 (635)
+ .+++|.+|+++++..+.|++|+||+ |+|+|+||||||||+|+.|+|.++++|||++++++..+|||||++||++++|
T Consensus 78 ~~~~~~k~~Ll~~~~~~~~v~vy~~g~~~~d~~~G~~v~~Tg~i~~f~l~~~~~g~~l~~~~~~~l~Ri~g~~~~~~~~l 157 (563)
T TIGR00418 78 KVLEPYKLELLDEIPNGVKRTPYGWGKAFVDLCKGPHLPNTSFIKAFKLEKVAGAYWRGDSKNKMLQRIYGTAWADKKQL 157 (563)
T ss_pred hccChhHHHHHhcCCCCCeEEEEEeCCEEEEEcCCCcCCCCCCCceeEEEEeccceEeEcCCCCceEeeeeccCCCHHHH
Confidence 8 4567999999864557899999999 9999999999999999999999999999999999999999999999999998
Q ss_pred hh------------------------------------------------------------------------------
Q 006680 310 KH------------------------------------------------------------------------------ 311 (635)
Q Consensus 310 ~e------------------------------------------------------------------------------ 311 (635)
.+
T Consensus 158 ~~~~~~~~~~~~~dH~~l~~~~~l~~~~~~~~~G~~~~~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg 237 (563)
T TIGR00418 158 AAYLLRLEEAKKRDHRKLGKELELFSFEPEIGPGLPFWLPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISG 237 (563)
T ss_pred HHHHHhhhhhhcCCHHHHHHhCCCcccCcccCCcceEEeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcC
Confidence 54
Q ss_pred ---------------------------------------cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEE
Q 006680 312 ---------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF 352 (635)
Q Consensus 312 ---------------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if 352 (635)
+|+++|+|++++|++||+|.+|.+.||+|+|||+|.|+|+|
T Consensus 238 ~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~ 317 (563)
T TIGR00418 238 HWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIF 317 (563)
T ss_pred CcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEE
Confidence 67789999999999999999998999999999999999999
Q ss_pred ecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccC-CCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccch
Q 006680 353 CRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR-PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKI 430 (635)
Q Consensus 353 ~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r-~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpki 430 (635)
|.++++++|+..+++++.++|+.||++ +.+.++++ |++++|+...|+++...+.++|+..|++|+++++.|++|+|++
T Consensus 318 ~~~~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~g~~y~~~~ 397 (563)
T TIGR00418 318 CTEDQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTRDPEDFIGEDELWEKAEAALEEALKELGVPYEIDPGRGAFYGPKI 397 (563)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCChhhhcCCHHHHHHHHHHHHHHHHhCCCceEEcCCCcceecceE
Confidence 998779999999999999999999998 78999998 7789999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEE
Q 006680 431 DISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVC 510 (635)
Q Consensus 431 d~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~ 510 (635)
++.+.|++|+.+||+|+|+||..+.|||+.|.+.+ ++...|+|||++++||+||++++|+|+++|.||.|++|.||+|+
T Consensus 398 ~f~~~~~lg~~~~~~t~q~~~~~g~ryd~~~~~~~-g~~~~p~ii~~Gfa~gieRli~~l~e~~~~~~p~~~~p~~v~vi 476 (563)
T TIGR00418 398 DFAFKDALGREWQCATVQLDFELPERFDLTYVDED-NEEKRPVMIHRAILGSIERFIAILLEKYAGNFPLWLAPVQVVVI 476 (563)
T ss_pred EEEeecCCCCceeeceeeeccCCHhhcCCEEECCC-CCEEeeEEEEeeccCcHHHHHHHHHHhccCCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999887 77788999999999999999999999888899999999999999
Q ss_pred ecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCc
Q 006680 511 PVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYN 590 (635)
Q Consensus 511 p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~ 590 (635)
|++++..++|.+|++.||++|++|++|.++++++|| +++|++.|+|
T Consensus 477 ~~~~~~~~~a~~ia~~LR~~Gi~v~~d~~~~sl~~q----------------------------------~k~A~~~g~~ 522 (563)
T TIGR00418 477 PVNERHLDYAKKVAQKLKKAGIRVDVDDRNERLGKK----------------------------------IREAQKQKIP 522 (563)
T ss_pred EccchHHHHHHHHHHHHHHcCCEEEEECCCCCHHHH----------------------------------HHHHHhcCCC
Confidence 999999999999999999999999999999999999 9999999999
Q ss_pred EEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHH
Q 006680 591 FILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 630 (635)
Q Consensus 591 ~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~ 630 (635)
|++|||++|.++|+|+||+|++|+|..++++++++.+++.
T Consensus 523 ~~iiiG~~E~~~~~v~vk~~~~g~q~~v~~~el~~~i~~~ 562 (563)
T TIGR00418 523 YMLVVGDKEMESLAVNVRTRKGQKLEKMSLDEFLEKLRKE 562 (563)
T ss_pred EEEEEchhhhhCCeEEEEECCCCccceeeHHHHHHHHHhh
Confidence 9999999999999999999999999999999999888653
No 9
>PRK14799 thrS threonyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.5e-78 Score=678.50 Aligned_cols=370 Identities=36% Similarity=0.625 Sum_probs=354.8
Q ss_pred EeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEeecCC-CCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 221 EVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRG-PHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 221 ~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDlc~G-PhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
.+|++||+++|++|+||.++|+. + .++ | ||+++|+|.| |||||||.|++|+|++.++. |+.++++|||||
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~---~-~~~-~-~~~~~~~~~~~ph~~~t~~~~~fkl~~~~~~---g~~~~~~l~Riy 115 (545)
T PRK14799 45 SITLDEVKKAINENVLANVSIEN---N-QIV-Y-KGNKVSIIEDKVSISTNLNPKYFEILNISTH---HPNPNEQYVRIR 115 (545)
T ss_pred cccHHHHHHHHhcCcceeeEeec---C-cEE-E-ccCceeecCCCCCCCCCCCcceEEEEEeccC---CCccCceeEEEE
Confidence 46789999999999999999972 2 444 4 9999999999 99999999999999999987 899999999999
Q ss_pred ccccCChhhhhh--------------------------------------------------------------------
Q 006680 300 GISYPDKKRLKH-------------------------------------------------------------------- 311 (635)
Q Consensus 300 G~~fp~~~~L~e-------------------------------------------------------------------- 311 (635)
|++||++++|++
T Consensus 116 g~~f~~~~~l~~~~~~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i 195 (545)
T PRK14799 116 GVAFETEEQLKDYLTWLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFHPKGQTIRNELIAFMREINDSMGYQEVYTSHV 195 (545)
T ss_pred EeecCCHHHHHHHHHHHHhcccCCHHHHHHHcCCcccccccCCcceEEcChHHHHHHHHHHHHHHHHHHcCCeEEECCcc
Confidence 999999999964
Q ss_pred ------------------------------------------------cccccceEEeeeccccccccCCCCcCceeece
Q 006680 312 ------------------------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRR 343 (635)
Q Consensus 312 ------------------------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvRE 343 (635)
|||++|+|++++|.+||+|.+|++.||+|+||
T Consensus 196 ~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvRe 275 (545)
T PRK14799 196 FKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRG 275 (545)
T ss_pred chHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCcccccccee
Confidence 89999999999999999999999999999999
Q ss_pred eeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe---EEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcC
Q 006680 344 FQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT---YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINE 420 (635)
Q Consensus 344 F~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~---~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~ 420 (635)
|+|+|+||||+++|+.+|+..+++++.++|+.|||+ +.+.+||||++++|..+.|++++..|+++|++.|++|.+++
T Consensus 276 F~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rpe~~~G~~~~wdka~~~l~~~L~~~gl~~~~~~ 355 (545)
T PRK14799 276 FVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRPDESIGSDELWEKATNALISALQESGLKFGIKE 355 (545)
T ss_pred EEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcChhhhcCCHHHHHHHHHHHHHHHHHcCCCeEEec
Confidence 999999999999999999999999999999999995 99999999999999999999999999999999999999999
Q ss_pred CCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCC
Q 006680 421 GDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPF 500 (635)
Q Consensus 421 g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~ 500 (635)
|+|+|||||+|+.+.|+++|.|||+|+|+||++|.||+|.|.+++ +...+|+|||+|++||+||++++|+||+.|.||+
T Consensus 356 g~gafygpkiD~~v~dalgr~~q~~Tiqldf~lp~rf~Ley~~~~-~~~~~pv~ihr~~~GgiERli~iL~e~~~G~~P~ 434 (545)
T PRK14799 356 KEGAFYGPKIDFEIRDSLGRWWQLSTIQVDFNLPERFKLEYIDKD-GIKKRPVMVHRAIYGSIDRFVAILLEHFKGKLPT 434 (545)
T ss_pred ceeccccCccceEehhhcCchhhhhhhhhhcCcccccceEEEcCC-CCCcccEEEEccCCCCHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999999999999999999999887 6677999999999999999999999999999999
Q ss_pred CCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhh
Q 006680 501 WLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVS 580 (635)
Q Consensus 501 ~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (635)
|++|.||+|+|++++..++|.+|++.||++|++|++|.++++++||
T Consensus 435 wlaP~qV~Iipi~e~~~~~A~~Ia~~LR~~GirVelD~~~~~lgkk---------------------------------- 480 (545)
T PRK14799 435 WLSSVQVRVLPITDEVNEYAEKVLNDMRKRRIRAEIDYAGETLSKR---------------------------------- 480 (545)
T ss_pred CCCCceEEEEEcCHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH----------------------------------
Confidence 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 581 VREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 581 ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+++|++.|+||++|||++|+++|+|+||+|+++++..++++++++.+.+.++++
T Consensus 481 ir~A~k~gip~viIIG~~E~e~~~VtVR~r~~~eq~~v~l~eli~~l~~~i~~~ 534 (545)
T PRK14799 481 IKNAYDQGVPYILIVGKKEASEGTVTVRARGNIEVRNVKFEKFLELLITEIAQR 534 (545)
T ss_pred HHHHHHcCCCEEEEEChhHhhcCeEEEEECCCCceEEEcHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999888775
No 10
>PRK03991 threonyl-tRNA synthetase; Validated
Probab=100.00 E-value=4.6e-52 Score=471.12 Aligned_cols=282 Identities=30% Similarity=0.543 Sum_probs=267.8
Q ss_pred hcccccceEEeeecc-ccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGV-LHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~-lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
.|||+||++++++|. +||+|.+|++.||+|+|+|+|+|+|+||++ +|+.+|+..+++++.++|+.|||+|.+.+++.
T Consensus 302 ~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~~e~~~~l~~~~~i~~~lGl~~~~~~~~t- 380 (613)
T PRK03991 302 ISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAMEEFEKQYEMILETGEDLGRDYEVAIRFT- 380 (613)
T ss_pred CchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEecCH-
Confidence 499999999999999 999999999999999999999999999996 89999999999999999999999999988652
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEE--cCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQI--NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDE 466 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~--~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e 466 (635)
.+.|+.++..|+++|+..|.+|.+ .+|+++|||||+|+.+.|++||.+||+|+|+|++.|.+||+.|.+.+
T Consensus 381 ------~df~~~~~~~l~~~l~~~g~~~~~~~~~g~~~~yg~kie~~~~d~~gr~~q~~T~qld~~~~~~f~l~y~d~~- 453 (613)
T PRK03991 381 ------EDFYEENKDWIVELVKREGKPVLLEILPERKHYWVLKVEFAFIDSLGRPIENPTVQIDVENAERFGIKYVDEN- 453 (613)
T ss_pred ------HHHhhhHHHHHHHHHHHcCCCEEecccCCccccCcCcEEEEEeCCCCCEEEEeeeecCcccchhCCCEEECCC-
Confidence 356888889999999999999987 58999999999999999999999999999999999999999999887
Q ss_pred CccccccccccceeeeHHHHHHHHHHHhCCC--------CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeC
Q 006680 467 AKTERPVMIHRAILGSVERMFAILLEHYKGK--------WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT 538 (635)
Q Consensus 467 ~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~--------~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~ 538 (635)
++..+|++||++++||+||++++|+|++.|. ||+|+||.||+|||++++..++|.+|++.||++|++|++|+
T Consensus 454 g~~~~Pviih~~~~GsieR~i~aliE~~~~~~~~g~gl~~P~~lAP~qV~IIpi~e~~~~~A~eIa~~Lr~~GirV~lDd 533 (613)
T PRK03991 454 GEEKYPIILHCSPTGSIERVIYALLEKAAKEEEEGKVPMLPTWLSPTQVRVIPVSERHLDYAEEVADKLEAAGIRVDVDD 533 (613)
T ss_pred CCEeeCEEEEECCEeHHHHHHHHHHHHhCCccccCceeEcCccccCceEEEEEeCHHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 6667899999999999999999999999887 99999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecc
Q 006680 539 TDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNM 618 (635)
Q Consensus 539 ~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~ 618 (635)
++.+++|| +++|++.|+||++|||++|+++|+|+||+|+++++..+
T Consensus 534 r~~slgkK----------------------------------ir~A~~~GiP~iIVIG~kEle~g~VtVr~R~t~eq~~v 579 (613)
T PRK03991 534 RDESLGKK----------------------------------IRDAGKEWIPYVVVIGDKEMESGKLTVTIREESEKVEM 579 (613)
T ss_pred CCCCHHHH----------------------------------HHHHHHcCCCEEEEECcchhhCCeEEEEECCCCceEEe
Confidence 99999999 99999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhc
Q 006680 619 SIEDLLKHFKEKLEAF 634 (635)
Q Consensus 619 ~~e~l~~~~~~~~~~~ 634 (635)
+++++++.++++++.+
T Consensus 580 ~l~eli~~l~~~~~~~ 595 (613)
T PRK03991 580 TLEELIERIKEETKGY 595 (613)
T ss_pred eHHHHHHHHHHHHhcC
Confidence 9999999999887654
No 11
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=100.00 E-value=1.7e-44 Score=378.90 Aligned_cols=192 Identities=64% Similarity=1.160 Sum_probs=187.2
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK 390 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~ 390 (635)
+|+++|+|++++|.+||+|.++.++|++|+|||+|+|+|+||+++++++|+..+++++.++|+.||++ +.+.+++|+++
T Consensus 106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~~~ 185 (298)
T cd00771 106 SYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRPEK 185 (298)
T ss_pred chhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcChhH
Confidence 78899999999999999999998999999999999999999999999999999999999999999998 89999999999
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccc
Q 006680 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE 470 (635)
Q Consensus 391 ~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~ 470 (635)
+.|+.+.|..++.+++++|+..|++|++++|+|||||||||+.+.|++||.|||+|+||||++|.+|||.|.+++ ++.+
T Consensus 186 ~~~d~e~W~~a~~~l~e~l~~~~~~~~~~~g~~afygpkid~~~~d~~gr~~q~~t~qld~~~~~~f~l~y~~~~-~~~~ 264 (298)
T cd00771 186 FIGSDEVWEKAEAALREALEEIGLPYEINEGEGAFYGPKIDFHVKDALGREWQCSTIQLDFNLPERFDLTYIGED-GEKK 264 (298)
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCCceECCCCcccccceEEEEEEeCCCCeeecceeEeeccChhhcCCEEEccC-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999888 7778
Q ss_pred cccccccceeeeHHHHHHHHHHHhCCCCCCCCCC
Q 006680 471 RPVMIHRAILGSVERMFAILLEHYKGKWPFWLSP 504 (635)
Q Consensus 471 ~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp 504 (635)
+|||||||++||+||++++|+||++|+||+||||
T Consensus 265 ~pv~ih~~~~Gs~eR~i~~l~e~~~g~~P~wlaP 298 (298)
T cd00771 265 RPVMIHRAILGSIERFIGILIEHYAGKFPLWLAP 298 (298)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhhCCCCCCccCc
Confidence 9999999999999999999999999999999998
No 12
>PRK12325 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.2e-42 Score=379.23 Aligned_cols=272 Identities=20% Similarity=0.307 Sum_probs=237.8
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
.||++||++++++|.+||+|.++. .||+|+|||+|+|+|+||.+ ++++.|+..+++++.++|+.||++ +.+.++++|
T Consensus 123 ~syrdLPlrl~q~~~~fR~E~~~~-~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~v~~~~~~ 201 (439)
T PRK12325 123 KSYKDLPLNLYHIQWKFRDEIRPR-FGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLRTFARLGLKAIPMRADTGP 201 (439)
T ss_pred hhchhhchHheEecCEecCCCCCC-CCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEccCC
Confidence 489999999999999999998874 89999999999999999887 559999999999999999999998 777888887
Q ss_pred CC------c-----C-----------------CChhhHHHHHHHHHHHHHHcCCCcE---EcCCCCccc-ccchhHHHHH
Q 006680 389 EK------Y-----L-----------------GDLATWEKAEAALTEALNEFGKPWQ---INEGDGAFY-GPKIDISVSD 436 (635)
Q Consensus 389 ~~------~-----l-----------------g~~~~~~~a~~~l~~~l~~~g~~~~---~~~g~~af~-gpkid~~~~d 436 (635)
.+ | + |....|+. .+|.++|++.+..|- ..+++++|| ||++++...+
T Consensus 202 ~gg~~s~ef~~~~~~Ge~~~~~c~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (439)
T PRK12325 202 IGGDLSHEFIILAETGESTVFYDKDFLDLLVPGEDIDFDV--ADLQPIVDEWTSLYAATEEMHDEAAFAAVPEERRLSAR 279 (439)
T ss_pred CCCCcceeeEeecCCCCceEEEcCCchhhccCCCcccCCH--HHHHHHHhhhcccccchhhhhccCCCCcCCCcceeecc
Confidence 21 1 2 33445776 788899988776552 345778999 9999887776
Q ss_pred --HhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceee-eHHHHHHHHHHHh----CCCCCCCCCCceEEE
Q 006680 437 --ALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEHY----KGKWPFWLSPRQAIV 509 (635)
Q Consensus 437 --~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~G-gveR~~~~l~e~~----~g~~p~~lsp~qv~v 509 (635)
++|+.|+++|. .+.+||+.|.+.+ ++ +++||++++| |+||++++|+|++ ++.||.|++|.||+|
T Consensus 280 ~ievg~~~~lg~~-----ys~~f~~~y~d~~-g~---~~~i~~~~~GiGieRli~~l~e~~~d~~g~~~P~~iaP~qV~I 350 (439)
T PRK12325 280 GIEVGHIFYFGTK-----YSEPMNAKVQGPD-GK---EVPVHMGSYGIGVSRLVAAIIEASHDDKGIIWPESVAPFKVGI 350 (439)
T ss_pred eEEEEeeecCccc-----ccHhcCCEEECCC-CC---EEeEEEeeeECCHHHHHHHHHHHhCccCCCcCCCCcCCeEEEE
Confidence 46777777764 4788999998876 33 3568999999 7999999999997 569999999999999
Q ss_pred Eec---CCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhh
Q 006680 510 CPV---SEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQL 586 (635)
Q Consensus 510 ~p~---~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~ 586 (635)
+|+ +++..+||.+|++.|+++|++|++|+++.+++|| +++|++
T Consensus 351 ipi~~~~~~~~~~a~~i~~~L~~~Gi~v~~D~~~~~lg~k----------------------------------i~~a~~ 396 (439)
T PRK12325 351 INLKQGDEACDAACEKLYAALSAAGIDVLYDDTDERPGAK----------------------------------FATMDL 396 (439)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHhHH----------------------------------HHHHHH
Confidence 999 5678899999999999999999999999999999 999999
Q ss_pred cCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHH
Q 006680 587 AQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 628 (635)
Q Consensus 587 ~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~ 628 (635)
.|+||++|||++|+++|+|+||+|+++++..++++++++.++
T Consensus 397 ~giP~~iiVG~~e~~~~~V~vr~r~~~~~~~v~~~el~~~i~ 438 (439)
T PRK12325 397 IGLPWQIIVGPKGLAEGKVELKDRKTGEREELSVEAAINRLT 438 (439)
T ss_pred cCCCEEEEECCcccccCeEEEEEcCCCceEEEEHHHHHHHHh
Confidence 999999999999999999999999999999999999988765
No 13
>PRK04173 glycyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-40 Score=366.46 Aligned_cols=291 Identities=23% Similarity=0.302 Sum_probs=234.2
Q ss_pred CccccceEEeec---------ccceeccCCCCCCcceeeccccCChhhhhhccc-ccceEEeeeccccccccCCCCcCce
Q 006680 270 TSFVKGFGCLKA---------SSAYWRGNKDRESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLT 339 (635)
Q Consensus 270 TG~Ik~F~L~k~---------s~g~~L~~p~~~~lqRIyG~~fp~~~~L~esyr-elPlrv~~vG~lnR~E~~g~l~gLi 339 (635)
-+.++.|.++-- ..-.+|+ |++-|-+ |+.-+...+||| +||++++++|.+||+|.++ ++||+
T Consensus 136 ~~~~~~f~l~f~~~~g~~~~~~~~~~lR---petaqg~----~~~f~~~~~syr~dLPlr~aq~g~~~RnE~s~-~~gL~ 207 (456)
T PRK04173 136 WTEVRQFNLMFKTFIGPVEDSKSLGYLR---PETAQGI----FVNFKNVLRTARKKLPFGIAQIGKSFRNEITP-RNFIF 207 (456)
T ss_pred CcCccchhhceeecccCccCCCcceeec---cccchhH----HHHHHHHHHhccccCCeeeeEEchhHhCccCC-CCCce
Confidence 455677766621 2223333 3344444 445577778999 9999999999999999998 79999
Q ss_pred eeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC--CCcCCChhhHHHHHHHHHHHHHHcCCCc
Q 006680 340 RVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP--EKYLGDLATWEKAEAALTEALNEFGKPW 416 (635)
Q Consensus 340 RvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~--~~~lg~~~~~~~a~~~l~~~l~~~g~~~ 416 (635)
|+|||+|+|+||||+++|+.+|+..+++++..+|..||++ +.+++++++ +.+.|..++|+. +++...|..|
T Consensus 208 RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~~~~e~~~ys~~~wd~------e~~~~~g~~~ 281 (456)
T PRK04173 208 RTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREHLPEELAHYSKATWDI------EYKFPFGRFW 281 (456)
T ss_pred eeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEecCcchhhccHHHHHhH------HHhCCCCCcE
Confidence 9999999999999999999999999999999999999998 889999985 367899999986 2344456667
Q ss_pred EEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEe-cCCCccccccccccceeeeHHH-HHHHHHHHh
Q 006680 417 QINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSA-EDEAKTERPVMIHRAILGSVER-MFAILLEHY 494 (635)
Q Consensus 417 ~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~-~~e~~~~~p~~i~~ai~GgveR-~~~~l~e~~ 494 (635)
+...|.+ ++ .+.. |.+ +++ ..+|+|.|.. +..+...+|+|||+|+ |+|| ++|+|++++
T Consensus 282 ~e~~g~~--~~--~dyd----L~~-~~~---------~s~~dl~y~~~~~~~~~~~P~vi~~si--GieRl~~ail~~~~ 341 (456)
T PRK04173 282 GELEGIA--NR--TDYD----LSR-HSK---------HSGEDLSYFDDETTGEKYIPYVIEPSA--GLDRLLLAFLEDAY 341 (456)
T ss_pred EEEeeee--cc--chhh----ccc-chh---------hcCCCeEEEecCCCCceeeeEEEEecc--cHHHHHHHHHHHHc
Confidence 6654432 11 1111 111 111 1358899983 2225677999999996 5999 566677787
Q ss_pred CC------------CCCCCCCCceEEEEecCCC--cHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeee
Q 006680 495 KG------------KWPFWLSPRQAIVCPVSEK--SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEV 560 (635)
Q Consensus 495 ~g------------~~p~~lsp~qv~v~p~~~~--~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~ 560 (635)
.| +||+|++|.||+|+|++++ ..++|.+|++.||++ ++|++|.+ +++++|
T Consensus 342 ~~~~~~~~~~r~~l~~P~~lAP~qV~Iipi~~~~e~~~~A~~la~~LR~~-irVelD~~-~slgkk-------------- 405 (456)
T PRK04173 342 TEEELGGGDKRTVLRLPPALAPVKVAVLPLVKKEKLSEKAREIYAELRKD-FNVDYDDS-GSIGKR-------------- 405 (456)
T ss_pred ccccccCCcceeEEECCCcCCCCEEEEEEecCcHHHHHHHHHHHHHHHhc-CEEEEeCC-CCHHHH--------------
Confidence 77 7999999999999999873 789999999999999 99999964 699999
Q ss_pred eehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHH
Q 006680 561 VFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 630 (635)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~ 630 (635)
+++|++.|+||++|||++|+++|+|+||+|+++++..++++++++.++++
T Consensus 406 --------------------ir~A~~~Gip~~IIIG~~El~~g~VtvR~r~t~eq~~v~l~el~~~l~~~ 455 (456)
T PRK04173 406 --------------------YRRQDEIGTPFCITVDFDTLEDNTVTIRDRDTMEQVRVKIDELKDYLAEK 455 (456)
T ss_pred --------------------HHHHHHcCCCEEEEECCchhhCCEEEEEECCCCceEEEeHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999988764
No 14
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.
Probab=100.00 E-value=8.4e-38 Score=346.75 Aligned_cols=253 Identities=21% Similarity=0.368 Sum_probs=221.5
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEE-EEecCchhHHHHHHHHHHHHHHHH-HhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDEVRGVLEFIDYAYR-IFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~~~~~~~~E~~~~l~~~~~~~~-~~G~~~~l~ls~r~ 388 (635)
.||++||++++++|.+||+|.++. .|++|+|||+|.|+| +||++++++.|+..+++++.++|+ .||+++.+...+.+
T Consensus 119 ~S~rdLPlr~~q~~~vfR~E~~~~-~gl~R~rEF~~~e~h~~~~~~e~a~~e~~~~l~~y~~i~~~~lglp~~~~~~~~~ 197 (472)
T TIGR00408 119 KSYTDLPLKINQWVNVFRYETKHT-RPFLRTREFTWQEAHTAHATAEEAEEQVLRALDIYKEFIENSLAIPYFVGRKPEW 197 (472)
T ss_pred cChhhcCHHHhheeeeecCCCCCC-CCcceeeeeehhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhccCCeEEEEecCch
Confidence 488999999999999999999986 999999999999999 699999999999999999999998 99999776655444
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e~ 467 (635)
+++.|...+|+ ++..+.| +|.+|++|++ |+++++.+||+.|.+.+ +
T Consensus 198 ek~~ga~~~~~------------------------------~e~~~~d--gr~~q~~t~~~Lg~~~sk~f~i~y~~~~-g 244 (472)
T TIGR00408 198 EKFAGAEYTWA------------------------------FETIMPD--GRTLQIATSHNLGQNFAKTFEIKFETPT-G 244 (472)
T ss_pred hhcCCccceEE------------------------------EeEEEcC--CCEEEEeeeecccccccHhcCCEEECCC-C
Confidence 66666555553 1222222 5778999999 99999999999998876 3
Q ss_pred ccccccccccceeeeHHHHHHHHHHHhC---C-CCCCCCCCceEEEEec--C----CCcHHHHHHHHHHHHHCCCEEEEe
Q 006680 468 KTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQAIVCPV--S----EKSQPYALQVRDHIYRAGYYVDVD 537 (635)
Q Consensus 468 ~~~~p~~i~~ai~GgveR~~~~l~e~~~---g-~~p~~lsp~qv~v~p~--~----~~~~~~a~~v~~~L~~~G~~v~~d 537 (635)
.++++|++.+|..||++++|+|+++ | .||+|++|.||+|+|+ + ++..++|.+|++.||++|++|++|
T Consensus 245 ---~~~~~h~~s~Gi~eRli~~lie~~~d~~gl~~P~~iaP~qV~Iipi~~~~~~~~~~~~~A~~l~~~Lr~~girv~lD 321 (472)
T TIGR00408 245 ---DKEYAYQTSYGISTRVIGALIAIHSDEKGLVLPPRVAPIQVVIIPIIFKKKENEKVMEAAREVRSRLKKAGFRVHID 321 (472)
T ss_pred ---CEEeeEEccccHHHHHHHHHHHHhCCCCceeeChhhCcceEEEEEccCCCCCCHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3567898888866999999998764 3 6999999999999998 3 357899999999999999999999
Q ss_pred CCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceec
Q 006680 538 TTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSN 617 (635)
Q Consensus 538 ~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~ 617 (635)
+++.++++| +++|++.|+||+++||++|+++|+|+||+|+++++..
T Consensus 322 ~r~~s~gkk----------------------------------~k~Ae~~GvP~~IiIG~~Ele~~~V~ik~rdt~eq~~ 367 (472)
T TIGR00408 322 DRDNRPGRK----------------------------------FYQWEIKGIPLRIEVGPNDIEKNIAVISRRDTGEKYQ 367 (472)
T ss_pred CCCCCHHHH----------------------------------HHHHHHCCCCEEEEECcchhhCCeEEEEECCCCceEE
Confidence 988899999 9999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhc
Q 006680 618 MSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 618 ~~~e~l~~~~~~~~~~~ 634 (635)
++++++++.+.+++++.
T Consensus 368 v~l~el~~~l~~~l~~~ 384 (472)
T TIGR00408 368 VSLDQLEERVVELLNNI 384 (472)
T ss_pred EEHHHHHHHHHHHHHHH
Confidence 99999999998887764
No 15
>PRK08661 prolyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.1e-36 Score=336.15 Aligned_cols=252 Identities=22% Similarity=0.389 Sum_probs=217.9
Q ss_pred hhcccccceEEeeeccccccccCCCCcCceeeceeeecCEEE-EecCchhHHHHHHHHHHHHHHH-HHhCCeEEEEEccC
Q 006680 310 KHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTR 387 (635)
Q Consensus 310 ~esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~~~~~~~~E~~~~l~~~~~~~-~~~G~~~~l~ls~r 387 (635)
..||++||++++++|.+||+|.+ .+||+|+|||+|.|+|+ ||++++++.|+..+++++..+| +.||+++.+. .+
T Consensus 124 i~SyrdLPlrl~q~~~vfR~E~~--~rgl~R~rEF~~~E~h~~~~~~eea~~e~~~~l~~y~~i~~~~Lglp~~~~--~~ 199 (477)
T PRK08661 124 IQSYRDLPLLYNQWVNVVRWETK--TRPFLRTREFLWQEGHTAHATEEEAEEETLEMLEIYKEFFEDYLAIPVIIG--KK 199 (477)
T ss_pred hcchhhcCHHHhcccceeeCCCC--CCCcceeeeEEEcceeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEE--ec
Confidence 34899999999999999999998 57999999999999997 6777889999999999999999 9999996543 33
Q ss_pred CCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCC
Q 006680 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDE 466 (635)
Q Consensus 388 ~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e 466 (635)
| .|++. .|+.+.+.++..+.| |+.+|++|++ |+.+++.+||+.|.+.+
T Consensus 200 ~--------~~ekf--------------------~ga~~~~~ie~~~~d--gr~~q~gt~~~Lg~~~s~~f~i~y~d~~- 248 (477)
T PRK08661 200 T--------EWEKF--------------------AGADYTYTIEAMMPD--GKALQAGTSHYLGQNFAKAFDIKFQDKD- 248 (477)
T ss_pred C--------hHHhh--------------------CCCcceeEEEEEeCC--CCEEEEEEecccccchhHhcCCEEECCC-
Confidence 3 12221 134444455555544 7889999995 99999999999998876
Q ss_pred CccccccccccceeeeHHHHHHHHHHHhC---C-CCCCCCCCceEEEEec------CCCcHHHHHHHHHHHHHCCCEEEE
Q 006680 467 AKTERPVMIHRAILGSVERMFAILLEHYK---G-KWPFWLSPRQAIVCPV------SEKSQPYALQVRDHIYRAGYYVDV 536 (635)
Q Consensus 467 ~~~~~p~~i~~ai~GgveR~~~~l~e~~~---g-~~p~~lsp~qv~v~p~------~~~~~~~a~~v~~~L~~~G~~v~~ 536 (635)
++... +|++++|..+|++++|+|+++ | .||+|++|.||+|+|+ +++...+|.+|++.|+++|++|++
T Consensus 249 g~~~~---v~~~s~G~~~R~i~alie~~~D~~Gl~lP~~iAP~qV~Iipi~~~~~~~~~~~~~a~~l~~~Lr~~GirV~l 325 (477)
T PRK08661 249 GKLEY---VHQTSWGVSTRLIGALIMTHGDDKGLVLPPKIAPIQVVIVPIFKKEEKKEEVLEYAKELAEELKKAGIRVKL 325 (477)
T ss_pred CCEee---eEEecccHHHHHHHHHHHHhCccCCCccCcccCCCeEEEEEecCCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 54433 478899988999999999875 3 6999999999999999 566889999999999999999999
Q ss_pred eC-CCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCce
Q 006680 537 DT-TDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDH 615 (635)
Q Consensus 537 d~-~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~ 615 (635)
|+ ++.++++| +++|++.|+||+|+||++|+++|+|+|++|++|++
T Consensus 326 D~r~~~s~gkK----------------------------------~~~ae~~GvP~~IiIG~~ele~~~V~ik~rdtgek 371 (477)
T PRK08661 326 DDRSDKTPGWK----------------------------------FNEWELKGVPLRIEIGPRDLENNTVVLVRRDTLEK 371 (477)
T ss_pred ECCCCCCHHHH----------------------------------HHHHHHCCCCEEEEECcchhhcCeEEEEECCCCce
Confidence 99 78999999 99999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHHHHHh
Q 006680 616 SNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 616 ~~~~~e~l~~~~~~~~~~ 633 (635)
..++++++++.+++++++
T Consensus 372 ~~v~~~el~~~l~~~l~~ 389 (477)
T PRK08661 372 ETVPLDELVEKVPELLEE 389 (477)
T ss_pred EEEEHHHHHHHHHHHHHH
Confidence 999999999998887765
No 16
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.9e-33 Score=300.28 Aligned_cols=263 Identities=24% Similarity=0.371 Sum_probs=199.9
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCCcC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYL 392 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~~l 392 (635)
..|+|+|++|++||+|+||+ +|+|||+|+|+++||.+++ +|+| ++.++.++|+.||++ |.++||++
T Consensus 99 ~~p~k~yy~g~vfRyErPQ~----GR~RqF~Q~g~E~iG~~~~~~DAE---vi~l~~~~l~~lGi~~~~l~iN~~----- 166 (429)
T COG0124 99 PKPLKLYYFGPVFRYERPQK----GRYRQFYQFGVEVIGSDSPDADAE---VIALAVEILEALGIGGFTLEINSR----- 166 (429)
T ss_pred cCCeeEEEecceecCCCCCC----CCceeeEEcCeEEeCCCCcccCHH---HHHHHHHHHHHcCCCcEEEEEcCc-----
Confidence 37899999999999999999 9999999999999999999 9999 999999999999998 99999665
Q ss_pred CChhhHHHH-----HHHHHHHHHHcC----C-------C-cEEc---------CCCCccc--ccchhHHHHHHhhhhhhh
Q 006680 393 GDLATWEKA-----EAALTEALNEFG----K-------P-WQIN---------EGDGAFY--GPKIDISVSDALKRKFQC 444 (635)
Q Consensus 393 g~~~~~~~a-----~~~l~~~l~~~g----~-------~-~~~~---------~g~~af~--gpkid~~~~d~l~r~~~~ 444 (635)
|..+..-++ ..+|..+++++. . . ...| +.+..+. .|++-.++.++...++..
T Consensus 167 g~l~~~~~~~gi~~~~~l~~~ldk~~k~~~~~L~e~~~~r~~~n~lr~ld~k~~~~~~~~~~ap~i~~~~~~e~~~~~~~ 246 (429)
T COG0124 167 GILEGRLEYLGIDQREALLRYLDKLDKIGKLELDEDSKRRLKTNPLRVLDSKKDSDQELLKNAPELLDYLDEESLEHLEE 246 (429)
T ss_pred ccHHHHHHhhcchhHHHHHHHHhhhhhHHHHHhhhhhhhhhhhchHHHHHhccchHHHHHhccHHhhhhccHHHHHHHHH
Confidence 444444444 445555555443 1 1 1111 1112221 355543333222222211
Q ss_pred ---------ceeeeecCCCeeeeeEEEecCCCc---------------------------cccccccccceeeeHHHHHH
Q 006680 445 ---------ATLQLDFQLPDRFNLGYSAEDEAK---------------------------TERPVMIHRAILGSVERMFA 488 (635)
Q Consensus 445 ---------~t~~ld~~l~~~~~L~Y~~~~e~~---------------------------~~~p~~i~~ai~GgveR~~~ 488 (635)
....+|+.+. .||||||++-.+ ...|.+ +.+-|+||++.
T Consensus 247 v~~~L~~~g~~~~id~~lv--RGLDYYtg~VFE~~~~~~~~~~sI~gGGRYD~Lv~~~gG~~~pav---GFaiGveRl~~ 321 (429)
T COG0124 247 LLALLDALGISYEIDPSLV--RGLDYYTGTVFEAVTDGLGAQGSVCGGGRYDGLVEEFGGKPTPAV---GFAIGVERLIL 321 (429)
T ss_pred HHHHHHHcCCCEEEcccee--cchhhccceEEEEEEcCCccccceecCccchHHHHHhCCCCCCce---eEehHHHHHHH
Confidence 1234555544 489999998211 112221 22229999999
Q ss_pred HHHHHhCCCCCCC-CCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhh
Q 006680 489 ILLEHYKGKWPFW-LSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEE 567 (635)
Q Consensus 489 ~l~e~~~g~~p~~-lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~ 567 (635)
+|.+ .|+ +.+ -++.+|+|+|+++...++|.+|+++||++|+.|++|..+++++||
T Consensus 322 ~l~~--~~~-~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~g~~~~~~~~~r~~k~q--------------------- 377 (429)
T COG0124 322 ALEE--EGK-EDPVETRVDVYVVPLGEDAEPEALKLAQKLRAAGISVEVDYSGRKLKKQ--------------------- 377 (429)
T ss_pred HHHH--cCC-CCCcCCCCCEEEEEcCchhHHHHHHHHHHHHHcCCcEEEEeccccHHHH---------------------
Confidence 9987 443 222 367899999999988899999999999999999999999999999
Q ss_pred hhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 568 LVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 568 ~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|++|++|+|++|.++|+|+|||+.+|+|..++++++++.++...
T Consensus 378 -------------~k~A~~~g~~~~viiGe~E~~~g~v~vKdl~t~eq~~v~~~~~~~~~~~~~ 428 (429)
T COG0124 378 -------------FKYADKLGARFAVILGEDELANGVVTVKDLATGEQEEVPLDELVEELKELL 428 (429)
T ss_pred -------------HHHHHHCCCCEEEEEcchHHhcCCEEEeeCCCCccceecHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999987653
No 17
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=99.97 E-value=9.1e-31 Score=296.76 Aligned_cols=278 Identities=23% Similarity=0.371 Sum_probs=200.3
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC-
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE- 389 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~- 389 (635)
+|+++|++++++|.+||+|.++. .||+|+|||+|.|+|+||.+++ +++|+..+++.+.++|+.||++|.+.++++..
T Consensus 124 s~~~LP~r~yqi~~~fR~E~rp~-~Gl~R~reF~q~d~~~f~~~~~~a~~~~~~~~~~~~~i~~~lgl~~~~~~~~~g~~ 202 (565)
T PRK09194 124 SYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFIMKDAYSFHADEESLDETYDAMYQAYSRIFDRLGLDFRAVEADSGAI 202 (565)
T ss_pred hcccCCeEEEEeeCCccCCCCCC-CcccccccEEEeeEEEEcCChHHHHHHHHHHHHHHHHHHHHhCCccEEEEcccccC
Confidence 78999999999999999996554 8999999999999999999766 89999999999999999999998887665421
Q ss_pred ------Cc-----CCCh-----------hhHHHHHH--------------------------------------------
Q 006680 390 ------KY-----LGDL-----------ATWEKAEA-------------------------------------------- 403 (635)
Q Consensus 390 ------~~-----lg~~-----------~~~~~a~~-------------------------------------------- 403 (635)
+| .|.. +..++|..
T Consensus 203 gg~~s~e~~~~~~~g~~~~~~c~~c~~~~n~e~a~~~~~~~~~~~~~~~~v~~p~~~t~~e~a~~lg~~~~~~~KtLi~~ 282 (565)
T PRK09194 203 GGSASHEFMVLADSGEDTIVYSDESDYAANIEKAEALPPPRAAAEEALEKVDTPNAKTIEELAEFLNVPAEKTVKTLLVK 282 (565)
T ss_pred CCceeEEEEEecCCCceEEEEeCCCCcchhhhhhcccCCCCccccccceeecCCCCCcHHHHHHHhCCCHHHeeEEEEEE
Confidence 00 1111 11111110
Q ss_pred -------------------HHHHHH--------------HHcC----------CC--cE--EcCC---CCccc-------
Q 006680 404 -------------------ALTEAL--------------NEFG----------KP--WQ--INEG---DGAFY------- 426 (635)
Q Consensus 404 -------------------~l~~~l--------------~~~g----------~~--~~--~~~g---~~af~------- 426 (635)
.|.+++ +..| .. +. +++. ...|+
T Consensus 283 ~~~~~~lvvvp~d~~vn~~kl~~~lg~~~l~~a~~eel~~~~g~~~G~v~P~Gl~~~v~viiD~sl~~~~~~~~gan~~g 362 (565)
T PRK09194 283 ADGELVAVLVRGDHELNEVKLENLLGAAPLELATEEEIRAALGAVPGFLGPVGLPKDVPIIADRSVADMSNFVVGANEDD 362 (565)
T ss_pred eCCeEEEEEeecchhhhHHHHHhhcCCcccccCCHHHHHHhhCCCCCccCcccCCCCceEEEeccccccccccccCCCCC
Confidence 001111 0001 00 00 0000 00000
Q ss_pred ------ccchhHH------HHHHh-hh-hhhh-------ceeeee--cCCCe----eeeeEEEecCCCccccccccccce
Q 006680 427 ------GPKIDIS------VSDAL-KR-KFQC-------ATLQLD--FQLPD----RFNLGYSAEDEAKTERPVMIHRAI 479 (635)
Q Consensus 427 ------gpkid~~------~~d~l-~r-~~~~-------~t~~ld--~~l~~----~~~L~Y~~~~e~~~~~p~~i~~ai 479 (635)
.|.-|+. +..+. |. --.| -.+++- |+|.. .|++.|.+++ ++...+.| ++
T Consensus 363 ~h~~~~~~~~d~~~~~~~d~~~~~~g~~c~~c~~~l~~~~~iEvGh~f~lG~~ys~~~~~~~~~~~-g~~~~~~m---~~ 438 (565)
T PRK09194 363 YHYVGVNWGRDFPVPEVADLRNVVEGDPSPDGGGTLKIARGIEVGHIFQLGTKYSEAMNATVLDEN-GKAQPLIM---GC 438 (565)
T ss_pred ceeeCCccCcCCCcccccchhhhhcCCCCCCCCceeEEeeeEEEEEEecCCcchhhccCCEEECCC-CCEEeEEE---ee
Confidence 0000110 00000 00 0122 123333 55544 4689998877 55555554 45
Q ss_pred ee-eHHHHHHHHHHHhC---C-CCCCCCCCceEEEEecC---CCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCccc
Q 006680 480 LG-SVERMFAILLEHYK---G-KWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFV 551 (635)
Q Consensus 480 ~G-gveR~~~~l~e~~~---g-~~p~~lsp~qv~v~p~~---~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~ 551 (635)
+| |++|++++|+|++. | .||.+++|.||+|+|++ ++..++|.+|++.|+++|++|.+|+++.++|+|
T Consensus 439 ~gIGv~Rli~al~e~~~d~~gl~~P~~iaP~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi~v~~Ddr~~~~g~k----- 513 (565)
T PRK09194 439 YGIGVSRLVAAAIEQNHDEKGIIWPKAIAPFDVHIVPVNMKDEEVKELAEKLYAELQAAGIEVLLDDRKERPGVK----- 513 (565)
T ss_pred EechHHHHHHHHHHhhccccCccCCCccCCceEEEEECCCCcHHHHHHHHHHHHHHhccCCeEEEECCCCCHHHH-----
Confidence 66 99999999999763 6 79999999999999997 567889999999999999999999999999999
Q ss_pred ccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHH
Q 006680 552 HARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 628 (635)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~ 628 (635)
+++|++.|+||+||||++|.++|+|+||+|++|++..++++++++.++
T Consensus 514 -----------------------------~~~ad~~GiP~~iiiG~~e~~~~~v~v~~r~~ge~~~v~~~~l~~~i~ 561 (565)
T PRK09194 514 -----------------------------FADADLIGIPHRIVVGDRGLAEGIVEYKDRRTGEKEEVPVDELVEFLK 561 (565)
T ss_pred -----------------------------HHHHHhcCCCEEEEEcCccccCCeEEEEECCCCceEEEeHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876
No 18
>CHL00201 syh histidine-tRNA synthetase; Provisional
Probab=99.97 E-value=2.9e-29 Score=275.93 Aligned_cols=265 Identities=15% Similarity=0.206 Sum_probs=194.4
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK 390 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~ 390 (635)
++++|+|++++|++||+|+++. +|+|||+|+|+|+||..++ +|+| ++.++.++|+.+|++ +.+.|+++.
T Consensus 98 ~~~~p~R~~y~g~vfR~e~~q~----GR~Ref~Q~g~EiiG~~~~~aD~E---vi~l~~~~l~~lGl~~~~i~l~~~~-- 168 (430)
T CHL00201 98 YHSNLQRLWYSGPMFRYERPQS----GRQRQFHQLGIEFIGSIDARADTE---VIHLAMQIFNELQVKNLILDINSIG-- 168 (430)
T ss_pred ccCCCeEEEEEcceecCCCCcC----CccceeEEeceEEECCCChhhHHH---HHHHHHHHHHHcCCCceEEEECCCC--
Confidence 5578999999999999999998 8999999999999999999 9999 899999999999997 999998763
Q ss_pred cCCChhhHHHHHHHHHHHHHHcC-------------CC---cEE-cCCCCcc--cccchhHHHH----HHhhhhhh----
Q 006680 391 YLGDLATWEKAEAALTEALNEFG-------------KP---WQI-NEGDGAF--YGPKIDISVS----DALKRKFQ---- 443 (635)
Q Consensus 391 ~lg~~~~~~~a~~~l~~~l~~~g-------------~~---~~~-~~g~~af--~gpkid~~~~----d~l~r~~~---- 443 (635)
....+......|..++.+.. .+ |.. +.++... -.|++...+. +.+.+..+
T Consensus 169 ---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~k~~~~~~~~~~a~~l~~~~~~~~~~~l~~~~~~l~~ 245 (430)
T CHL00201 169 ---KLEDRQSYQLKLVEYLSQYQDDLDTDSQNRLYSNPIRILDSKNLKTQEILDGAPKISDFLSLESTEHFYDVCTYLNL 245 (430)
T ss_pred ---chhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhhhHHHhhccCccHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 22222222223333332210 00 000 1111000 0122211111 11111111
Q ss_pred -hceeeeecCCCeeeeeEEEecC--C-------------------------CccccccccccceeeeHHHHHHHHHHHhC
Q 006680 444 -CATLQLDFQLPDRFNLGYSAED--E-------------------------AKTERPVMIHRAILGSVERMFAILLEHYK 495 (635)
Q Consensus 444 -~~t~~ld~~l~~~~~L~Y~~~~--e-------------------------~~~~~p~~i~~ai~GgveR~~~~l~e~~~ 495 (635)
...+.+|+++. .+|+|||+. | ++...|++ +.++|+||++.+|.+.
T Consensus 246 ~g~~~~~Dl~lv--RgldYYTG~vFE~~~~~~~~~~~i~gGGRYD~L~~~fg~~~~Pav---Gfa~g~erl~~~l~~~-- 318 (430)
T CHL00201 246 LNIPYKINYKLV--RGLDYYNDTAFEIKTLSSNGQDTICGGGRYDSLIHQLGGPKTPAV---GCAIGLERLLLIAKDN-- 318 (430)
T ss_pred cCCcEEECcccc--cCCccccccEEEEEECCCCCcceeeeccchHHHHHHhCCCCCCee---EEEecHHHHHHHHhcc--
Confidence 11244555544 489999985 1 12345663 5667999999988763
Q ss_pred CCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccc
Q 006680 496 GKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIY 575 (635)
Q Consensus 496 g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (635)
.. .+..|.+|+|+|++++...+|.+++++||++|++|++|..+++++++
T Consensus 319 ~~--~~~~~~~v~v~~~~~~~~~~a~~ia~~LR~~Gi~veid~~~~~l~k~----------------------------- 367 (430)
T CHL00201 319 II--LPKQSIDVYIATQGLKAQKKGWEIIQFLEKQNIKFELDLSSSNFHKQ----------------------------- 367 (430)
T ss_pred cc--CCCCCCCEEEEEcCHHHHHHHHHHHHHHHhCCCeEEEeeCCCCHHHH-----------------------------
Confidence 22 33467789999999889999999999999999999999988999999
Q ss_pred cchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHH
Q 006680 576 PIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 632 (635)
Q Consensus 576 ~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~ 632 (635)
+++|++.|++|++|||++|.++|+|+||++++++|..++++++++.+.++..
T Consensus 368 -----~k~A~~~~~~~viiiG~~E~~~~~vtvk~l~~~~q~~i~~~~~~~~~~~~~~ 419 (430)
T CHL00201 368 -----IKQAGKKRAKACIILGDNEIMDNCITIKWLDEQVQENAQYSNFKQEISYLKK 419 (430)
T ss_pred -----HHHHHHcCCCEEEEEechHHhCCcEEEEECCCCCcEEEcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876643
No 19
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II. Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.
Probab=99.96 E-value=9.2e-28 Score=271.57 Aligned_cols=141 Identities=21% Similarity=0.414 Sum_probs=123.3
Q ss_pred cCCCe----eeeeEEEecCCCccccccccccceee-eHHHHHHHHHHHhC---C-CCCCCCCCceEEEEecCC---CcHH
Q 006680 451 FQLPD----RFNLGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEHYK---G-KWPFWLSPRQAIVCPVSE---KSQP 518 (635)
Q Consensus 451 ~~l~~----~~~L~Y~~~~e~~~~~p~~i~~ai~G-gveR~~~~l~e~~~---g-~~p~~lsp~qv~v~p~~~---~~~~ 518 (635)
|+|.. .|++.|.+++ ++...+.| +++| |++|++++++|++. | .||.|++|+||.|+|+.. +..+
T Consensus 415 F~LG~kYS~~~~~~~~d~~-g~~~~~~m---gcyGIGvsRli~aiie~~~D~~Gl~wP~~iAP~qV~Iip~~~~~~~~~~ 490 (568)
T TIGR00409 415 FQLGTKYSEALKATFLDEN-GKNQFMTM---GCYGIGVSRLVSAIAEQHHDERGIIWPKAIAPYDVVIVVMNMKDEEQQQ 490 (568)
T ss_pred ccchhhhHHhcCCEEECCC-CCEEEEEE---eCCcchHHHHHHHHHHHhCccCCCcCChhhCCeEEEEEEcCCChHHHHH
Confidence 55554 4688998876 55443443 6777 99999999999874 5 699999999999999853 4677
Q ss_pred HHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEccc
Q 006680 519 YALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEE 598 (635)
Q Consensus 519 ~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~ 598 (635)
+|.+|++.|.++|++|.+|+++.++|+| +++|++.|+||+|+||.+
T Consensus 491 ~a~~l~~~L~~~gi~v~~DDr~~~~G~K----------------------------------~~dadliGiP~~i~vG~~ 536 (568)
T TIGR00409 491 LAEELYSELLAQGVDVLLDDRNERAGVK----------------------------------FADSELIGIPLRVVVGKK 536 (568)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCHHHH----------------------------------HHhhhhcCCCEEEEECCC
Confidence 8999999999999999999999999999 999999999999999999
Q ss_pred ccccCeEEEEEcCCCceecccHHHHHHHHHH
Q 006680 599 EAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 629 (635)
Q Consensus 599 E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~ 629 (635)
++++|+|+||+|+++++..++++++++.+.+
T Consensus 537 ~l~~~~Vei~~R~~~~~~~v~~~~l~~~i~~ 567 (568)
T TIGR00409 537 NLDNGEIEVKKRRNGEKQLIKKDELVECLEE 567 (568)
T ss_pred cccCCeEEEEEcCCCceEEEEHHHHHHHHhh
Confidence 9999999999999999999999999988764
No 20
>PLN02530 histidine-tRNA ligase
Probab=99.95 E-value=8.9e-28 Score=267.99 Aligned_cols=264 Identities=22% Similarity=0.242 Sum_probs=189.8
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe---EEEEEccCCC-
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT---YELKLSTRPE- 389 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~---~~l~ls~r~~- 389 (635)
.+|+|++++|++||++++++ +|.|||+|+|+|+||.+++ +|+| ++.++.++++.||++ +.++||+|..
T Consensus 162 ~~P~r~~y~g~vfR~e~~q~----gr~REf~Q~giEiiG~~~~~aDaE---vi~l~~~~l~~lgl~~~~~~i~i~~~~i~ 234 (487)
T PLN02530 162 SLPLKWFAIGQCWRYERMTR----GRRREHYQWNMDIIGVPGVEAEAE---LLAAIVTFFKRVGITSSDVGIKVSSRKVL 234 (487)
T ss_pred CCCeEEEEEcCEEcCcCCCC----CCccceEEcCeeEeCCCCcchhHH---HHHHHHHHHHHcCCCCCceEEEEcCHHHH
Confidence 57999999999999999998 8999999999999999998 9999 899999999999995 9999999841
Q ss_pred ----CcCCCh-hhH-----------HHHHHHHHHHHHHcCCCcEEcCCC-Cccc---ccchhHH------HHHHhhhhhh
Q 006680 390 ----KYLGDL-ATW-----------EKAEAALTEALNEFGKPWQINEGD-GAFY---GPKIDIS------VSDALKRKFQ 443 (635)
Q Consensus 390 ----~~lg~~-~~~-----------~~a~~~l~~~l~~~g~~~~~~~g~-~af~---gpkid~~------~~d~l~r~~~ 443 (635)
+.+|.. +.+ ......+.+.|...|.+......- ..+. -+++... ..+.+.+.++
T Consensus 235 ~~~l~~~~~~~~~~~~v~~~~d~l~k~~~~~l~~~L~~~~~~~~~~~~l~~l~~~~~~~~l~~~~~~~~~~l~~L~~l~~ 314 (487)
T PLN02530 235 QAVLKSYGIPEESFAPVCVIVDKLEKLPREEIEKELDTLGVSEEAIEGILDVLSLKSLDDLEALLGADSEAVADLKQLFS 314 (487)
T ss_pred HHHHHHcCCchhhHHHHHHHHHhhhhccHHHHHHHHHHcCCCHHHHHHHHHHHhccCHHHHHHHhhhhHHHHHHHHHHHH
Confidence 122321 111 111123444454444432110000 0000 0111100 1111121111
Q ss_pred h-------ceeeeecCCCeeeeeEEEecCCCccccccccccceee-----------------------eHHHHHHHHHHH
Q 006680 444 C-------ATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG-----------------------SVERMFAILLEH 493 (635)
Q Consensus 444 ~-------~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~G-----------------------gveR~~~~l~e~ 493 (635)
. ..+.+|+.+. .+|+||||.-++.-.+.-.+++|+| |++|++.+|.+
T Consensus 315 ~l~~~g~~~~i~~Dl~lv--rgldYYTGivFe~~~~~~~~~~I~gGGRYD~Li~~fgg~~~pAvGFa~g~~~l~~~l~~- 391 (487)
T PLN02530 315 LAEAYGYQDWLVFDASVV--RGLAYYTGIVFEGFDRAGKLRAICGGGRYDRLLSTFGGEDTPACGFGFGDAVIVELLKE- 391 (487)
T ss_pred HHHHcCCCccEEEecccc--cCccccCceEEEEEecCCCcceeeecccHHHHHHHhCCCCCCeeEEEEhHHHHHHHHHh-
Confidence 1 1366776665 3899999872111000001233443 56777776655
Q ss_pred hCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccc
Q 006680 494 YKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGIN 573 (635)
Q Consensus 494 ~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (635)
.|.+|.|.+|.+|+|+|++++...+|.+++++||++|++|++|..+++++|+
T Consensus 392 -~g~~p~~~~~~dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~~~l~k~--------------------------- 443 (487)
T PLN02530 392 -KGLLPELPHQVDDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEPKKLKWV--------------------------- 443 (487)
T ss_pred -cCCCCCCCCCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHH---------------------------
Confidence 5788999999999999999999999999999999999999999988999999
Q ss_pred cccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHH
Q 006680 574 IYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDL 623 (635)
Q Consensus 574 ~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l 623 (635)
+++|++.+++|++++|++|.++|+|+||++.+|++..++++++
T Consensus 444 -------ik~A~k~g~~~iviiG~~E~~~~~V~vK~l~sgeq~~v~~~el 486 (487)
T PLN02530 444 -------FKHAERIGAKRLVLVGASEWERGMVRVKDLSSGEQTEVKLDEL 486 (487)
T ss_pred -------HHHHHHCCCCEEEEEchhHHhCCeEEEEECCCCcceEechHHc
Confidence 9999999999999999999999999999999999999998874
No 21
>PRK14894 glycyl-tRNA synthetase; Provisional
Probab=99.95 E-value=2e-27 Score=259.22 Aligned_cols=282 Identities=21% Similarity=0.227 Sum_probs=201.3
Q ss_pred CCCcceeeccccCChhhhhhccc-ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHH
Q 006680 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFID 370 (635)
Q Consensus 292 ~~~lqRIyG~~fp~~~~L~esyr-elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~ 370 (635)
++.-|-| |..-+.+.+..+ .+|++++++|..||+|.+++ ++++|+|||+|.+++.||.++.....+.-.++...
T Consensus 143 PETAQGi----FvnFk~ll~~~~~klPFgiaQIGk~FRNEIsPr-~~l~R~REF~q~EiE~Fv~P~~~~~~~~y~~~~~~ 217 (539)
T PRK14894 143 PETAQGI----FVNFANVLATSARKLPFGIAQVGKAFRNEINPR-NFLFRVREFEQMEIEYFVMPGTDEEWHQRWLEARL 217 (539)
T ss_pred cccchHH----HHHHHHHHHhcCCCCCeeEEeeeccccCccCCC-CceeecccchhheEEEEeCCCchHHHHHHHHHHHH
Confidence 4455554 344466666665 89999999999999999998 99999999999999999999875555556777788
Q ss_pred HHHHHhCCe-EEEEEccCCC--CcCCChhhHHHHHHHHHHHHHHcC-CCcEEcCCCCcccccchhHHHHHHhhhhhhhce
Q 006680 371 YAYRIFGFT-YELKLSTRPE--KYLGDLATWEKAEAALTEALNEFG-KPWQINEGDGAFYGPKIDISVSDALKRKFQCAT 446 (635)
Q Consensus 371 ~~~~~~G~~-~~l~ls~r~~--~~lg~~~~~~~a~~~l~~~l~~~g-~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t 446 (635)
..|..+|++ -.+++...+. -..-...+||. ++ .+. ..|..-.|-. -+-|.. |+++ +..+
T Consensus 218 ~fl~~iGi~~~~lrfr~h~~~ElAHYa~~~~D~------e~--~~p~~Gw~E~~Gia----~RtdyD----L~~H-~~~s 280 (539)
T PRK14894 218 AWWEQIGIPRSRITIYDVPPDELAHYSKRTFDL------MY--DYPNIGVQEIEGIA----NRTDYD----LGSH-SKDQ 280 (539)
T ss_pred HHHHHhCCCHHHeeeeecCcHHhhhhhhccEEE------EE--ECCCCCeEEEEEee----cccccC----HHHH-hhhc
Confidence 888999997 4455533321 11222334431 00 011 1233222211 011111 2222 2112
Q ss_pred e------eeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHH---------------------------
Q 006680 447 L------QLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEH--------------------------- 493 (635)
Q Consensus 447 ~------~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~--------------------------- 493 (635)
- .+.++-....+|.|.....++.-.|.+|. .+-|++|++.++++|
T Consensus 281 ~~~~l~~~~~~~~~s~~~l~~~~~~~~~~~iP~ViE--pS~G~dR~~~a~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (539)
T PRK14894 281 EQLNLTARVNPNEDSTARLTYFDQASGRHVVPYVIE--PSAGVGRCMLAVMCEGYAEELTKAIPGEKLAAVGDALEAFLK 358 (539)
T ss_pred ccCCceeeeccccCCCceEEEEeccCCcccCCceee--cCcchhHHHHHHHHHHHhhhhhcccccccccccccchhhhcc
Confidence 1 22222233446788765434455687775 345899987776433
Q ss_pred ---------------------------------------------------------------hCCC--CCCCCCCceEE
Q 006680 494 ---------------------------------------------------------------YKGK--WPFWLSPRQAI 508 (635)
Q Consensus 494 ---------------------------------------------------------------~~g~--~p~~lsp~qv~ 508 (635)
+.|. ||+||||.||.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~rgvLplp~wLAPvQVa 438 (539)
T PRK14894 359 SVGRSEKLAGEARDAILARGEALLQALPERLPEVEQLLAMPGADQIELGKKLRGQAQPLIDEHYRTVLRLKPRLAPIKVA 438 (539)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcccceecCCCcCCCCceEE
Confidence 3343 66999999999
Q ss_pred EEecCCC---cHHHHHHHHHHHHHCCC-EEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHH
Q 006680 509 VCPVSEK---SQPYALQVRDHIYRAGY-YVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREA 584 (635)
Q Consensus 509 v~p~~~~---~~~~a~~v~~~L~~~G~-~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A 584 (635)
|+|++++ ..+||.+|++.|+++|+ +|.+|+ +.+|||| +|+|
T Consensus 439 VLPLs~~~~~l~eyAkeI~~~L~~~Gi~rv~~Dd-sesIGKK----------------------------------yRra 483 (539)
T PRK14894 439 VFPLKRNHEGLVATAKAVRRQLQVGGRMRTVYDD-TGAIGKL----------------------------------YRRQ 483 (539)
T ss_pred EEeccccccchHHHHHHHHHHHHHCCCceEEEcC-CCCHhHH----------------------------------HHhh
Confidence 9999973 44999999999999998 999999 5699999 9999
Q ss_pred hhcCCcEEEEE-------cccccccCeEEEEEcCCCceecccHHHHHHHHHHHHH
Q 006680 585 QLAQYNFILVV-------GEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 632 (635)
Q Consensus 585 ~~~~~~~~lvv-------G~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~ 632 (635)
+..|+||+||| |++|+++|+||||+|++++|..|+++++++.+++.++
T Consensus 484 DeiGiPy~ITVD~~Tl~dGdkE~e~gTVTVR~RDs~eQ~rV~ideli~~L~~~~~ 538 (539)
T PRK14894 484 DEIGTPFCITVDFDTIGQGKDPALAGTVTVRDRDTMAQERVPISELEAYLRDRVS 538 (539)
T ss_pred hccCCCEEEEEeccccccccchhhcCeEEEEEeCCCeEEEEEHHHHHHHHHHHhc
Confidence 99999999999 9999999999999999999999999999999988764
No 22
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed
Probab=99.95 E-value=1.1e-26 Score=253.69 Aligned_cols=257 Identities=24% Similarity=0.387 Sum_probs=194.4
Q ss_pred cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCCcCC
Q 006680 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLG 393 (635)
Q Consensus 316 lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~~lg 393 (635)
+|+|++++|.+||++.++. +|.|||+|+|+||||.+++ +++| ++.++.++|+.||++ +.+.++ .+|
T Consensus 97 ~p~r~~~~g~vfR~e~~~~----gr~ref~Q~g~ei~g~~~~~~d~E---~i~~~~~~l~~lg~~~~~~~l~-----~~~ 164 (412)
T PRK00037 97 QPFKLYYIGPMFRYERPQK----GRYRQFHQFGVEVIGSDSPLADAE---VIALAADILKALGLKGLKLLIN-----SLG 164 (412)
T ss_pred CCeEEEEEcCccccCCCCC----CcccceEEcCeeeeCCCCcchhHH---HHHHHHHHHHHcCCCceeeeec-----cCC
Confidence 8999999999999999887 7999999999999999987 9999 899999999999997 788774 355
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCc------------------EEcCCCCccc--ccchhHHHHH----Hhhhhhh-----h
Q 006680 394 DLATWEKAEAALTEALNEFGKPW------------------QINEGDGAFY--GPKIDISVSD----ALKRKFQ-----C 444 (635)
Q Consensus 394 ~~~~~~~a~~~l~~~l~~~g~~~------------------~~~~g~~af~--gpkid~~~~d----~l~r~~~-----~ 444 (635)
+...|......|..+|++ +.+- ..+.++...+ .+++...+.+ ++.+-.. .
T Consensus 165 ~~~~~~~~~~~l~~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 243 (412)
T PRK00037 165 DFEIRANYRKALVGFLEK-GLDELDEDSKRRLETNPLRILDKKDKEDQELLKDAPKLLDYLDEESKEHFEELKELLDALG 243 (412)
T ss_pred CHHHhHHHHHHHHHHHHh-CchhhchHHHHHHhhCchhhhcccchhhHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 555555555556666654 2210 0011111111 1222211111 1111111 1
Q ss_pred ceeeeecCCCeeeeeEEEecC--C------C-------------------ccccccccccceeeeHHHHHHHHHHHhCCC
Q 006680 445 ATLQLDFQLPDRFNLGYSAED--E------A-------------------KTERPVMIHRAILGSVERMFAILLEHYKGK 497 (635)
Q Consensus 445 ~t~~ld~~l~~~~~L~Y~~~~--e------~-------------------~~~~p~~i~~ai~GgveR~~~~l~e~~~g~ 497 (635)
..+.+|+.+. .+++||||. | + ....|.+ +++.|+||++++|.++..
T Consensus 244 ~~i~~Dl~~~--r~l~YYtG~vFe~~~~~~g~~~~i~~GGRYD~L~~~f~~~~~pav---Gfs~~le~l~~~l~~~~~-- 316 (412)
T PRK00037 244 IPYVIDPRLV--RGLDYYTGTVFEFVTDDLGAQGTVCGGGRYDGLVEQFGGPPTPAV---GFAIGVERLLLLLEELGE-- 316 (412)
T ss_pred CCEEECCCcc--cChhhccceEEEEEECCCCccceeeeccchhHHHHHhCCCCCceE---EEEEcHHHHHHHHHhcCC--
Confidence 1355666655 378999887 1 1 0122332 455699999999988641
Q ss_pred CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccc
Q 006680 498 WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPI 577 (635)
Q Consensus 498 ~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (635)
+|.||+|+|++++...+|.++++.||++|++|++|..+++++++
T Consensus 317 -----~~~~vlI~~~~~~~~~~a~~i~~~Lr~~Gi~v~i~~~~~~~~~~------------------------------- 360 (412)
T PRK00037 317 -----EPVDVYVVPLGEDAELAALKLAEKLRAAGIRVELDYGGRKLKKQ------------------------------- 360 (412)
T ss_pred -----CCCCEEEEEeChHHHHHHHHHHHHHHHCCCeEEEeCCCCCHHHH-------------------------------
Confidence 78899999998878889999999999999999999888899999
Q ss_pred hhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 578 RVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 578 ~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+|++++||++|.++|+|+||++++|++..++++++++++++++
T Consensus 361 ---~~~a~~~gi~~~viig~~e~~~~~v~vr~~~~~~~~~v~~~el~~~i~~~~ 411 (412)
T PRK00037 361 ---FKYADKSGARFVLILGEDELANGTVTVKDLRTGEQQTVPLDELVEALKELL 411 (412)
T ss_pred ---HHHHHHcCCCEEEEEChhHHhCCeEEEEECCCCceEEeeHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998764
No 23
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type. This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases.
Probab=99.94 E-value=6.2e-27 Score=261.28 Aligned_cols=293 Identities=24% Similarity=0.354 Sum_probs=194.1
Q ss_pred CCCcceeeccccCChhhhhhccc-ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hH---HHHHH--
Q 006680 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IK---DEVRG-- 364 (635)
Q Consensus 292 ~~~lqRIyG~~fp~~~~L~esyr-elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~---~E~~~-- 364 (635)
|++-|-| |.+-+.|.+..+ .+|++++++|..||+|.+++ +||+|+|||+|.+++.||.++. .. .++..
T Consensus 161 PETAQGi----FvnFk~l~~~~~~klPfgiaQiGk~fRNEIsPr-~~l~R~REF~q~EiE~F~~p~~~~~~~f~~~~~~~ 235 (551)
T TIGR00389 161 PETAQGI----FINFKRLLQFFRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFEQAEIEFFVHPLDKSHPKFEEVKQDI 235 (551)
T ss_pred cccchhh----HHhHHHHHHhcCCCCCeeehhhhHhhhcccCcc-cceEEeehhhhchhheecCcccccchhhHHHHHHH
Confidence 5556655 455577777776 89999999999999999998 9999999999999999999952 11 11111
Q ss_pred -----------------------------HHHHHHHHHHHhCCe-EEEEEccC-C-CCcCCChhhHHH------------
Q 006680 365 -----------------------------VLEFIDYAYRIFGFT-YELKLSTR-P-EKYLGDLATWEK------------ 400 (635)
Q Consensus 365 -----------------------------~l~~~~~~~~~~G~~-~~l~ls~r-~-~~~lg~~~~~~~------------ 400 (635)
.+.....+|..+|++ =.+++... + |...-...+||.
T Consensus 236 ~~l~~~~~~~~~~~eav~~g~i~n~~~~y~~~~~~~fl~~~Gi~~~~lrfrqh~~~e~AHYa~~~~D~e~~~~~Gw~E~~ 315 (551)
T TIGR00389 236 LPLLPRQMQESGIGEAVESGMIENETLGYFIARVKQFLLEIGINPDKLRFRQHDKNEMAHYAKDCWDFEFLTPYGWIECV 315 (551)
T ss_pred HhhccchhhhccHHHHHHhcccchHHHHHHHHHHHHHHHHhCCCHHHeeecccCcHHHhhhccccEeEEEecCCCcEEEE
Confidence 112234556778885 33333222 1 111222233331
Q ss_pred --HHH---HHHHHHHHcCCCcEEc-CC-------------CCcccccch-------hHHHHHH----hhhhhhhceeeee
Q 006680 401 --AEA---ALTEALNEFGKPWQIN-EG-------------DGAFYGPKI-------DISVSDA----LKRKFQCATLQLD 450 (635)
Q Consensus 401 --a~~---~l~~~l~~~g~~~~~~-~g-------------~~af~gpki-------d~~~~d~----l~r~~~~~t~~ld 450 (635)
|-. -|+.--+..|.+...- +- +..-.||+. -..++++ +....+.. +
T Consensus 316 G~a~R~~yDL~~H~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 391 (551)
T TIGR00389 316 GIADRGDYDLTQHSKFSGKSLSVFDKLDEPREVTKWEIEPNKKKFGPKFRKDAKKIESNLSEDDLEEREEELDKN----E 391 (551)
T ss_pred EeccccccChHHHHHhhCCCeEEEeecCCCceeEEEEEecchhhhhhhhHhHHHHHHHhhcHHHHHHHHhhhhcc----c
Confidence 000 0111111122221110 00 000012211 0011111 01111111 2
Q ss_pred cCCC-eeeeeEEEecC-CCccccccccccceeeeHHHHHHHHHHHhCC------------CCCCCCCCceEEEEecCCC-
Q 006680 451 FQLP-DRFNLGYSAED-EAKTERPVMIHRAILGSVERMFAILLEHYKG------------KWPFWLSPRQAIVCPVSEK- 515 (635)
Q Consensus 451 ~~l~-~~~~L~Y~~~~-e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g------------~~p~~lsp~qv~v~p~~~~- 515 (635)
|.++ ..+.+..++.. .++..+|++||.|+ |+||++++|+||..+ +||+|++|.+|+|+|++++
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~P~VIepS~--GIdRIi~ALle~~~~e~~~~~~~r~vL~lp~~lAP~kV~VIpl~~~~ 469 (551)
T TIGR00389 392 VELDKDLVEIEMVTEVVHGEKYIPHVIEPSF--GIDRIIYALLEHSYQEEVLDGEEREVLRLPPHLAPIKVAVLPLVNKE 469 (551)
T ss_pred eecchhhhhheeeeeccCCcEecceEEEccc--CHHHHHHHHHHhhCccccccccccceeccCCccCCceEEEEEecCcH
Confidence 3332 12234444433 24567899999774 799999999887533 6999999999999999855
Q ss_pred -cHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEE
Q 006680 516 -SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILV 594 (635)
Q Consensus 516 -~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lv 594 (635)
..++|.+|++.||++|++|++|.++. ++|| +++|++.|+||+++
T Consensus 470 el~~~A~eIa~~LR~~GI~VeiD~s~s-IGKq----------------------------------~rrADeiGiPf~II 514 (551)
T TIGR00389 470 ELKEIAKEIFQALRKTGIRIKYDDSGT-IGKR----------------------------------YRRADEIGTPFCVT 514 (551)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCC-HHHH----------------------------------HHHHHHcCCCEEEE
Confidence 88999999999999999999999864 9999 99999999999999
Q ss_pred EcccccccCeEEEEEcCCCceecccHHHHHHHHHHH
Q 006680 595 VGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 630 (635)
Q Consensus 595 vG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~ 630 (635)
||++|.++|+|+||+|++++|..++++++.+.+.++
T Consensus 515 IG~~EledgtVTIRdRdT~eQ~~I~ldeL~~~L~e~ 550 (551)
T TIGR00389 515 IDFETLEDETVTIRERDSMKQVRVKIKELPSYIKKL 550 (551)
T ss_pred ECCchhhCCEEEEEECCCCceEEeeHHHHHHHHHhh
Confidence 999999999999999999999999999999888764
No 24
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=99.91 E-value=2.6e-23 Score=226.22 Aligned_cols=247 Identities=23% Similarity=0.335 Sum_probs=181.2
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEK 390 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~ 390 (635)
++.+|+|++++|.+||++.++. +|.|||+|.|+||||.+++ ++.| ++.++.++++.||++ +.+.+||+.
T Consensus 93 ~~~~p~r~~y~g~vfR~e~~~~----gr~ref~Q~g~eiig~~~~~~d~E---~i~l~~e~l~~lg~~~~~i~i~~~~-- 163 (397)
T TIGR00442 93 LLPKPFKLYYIGPMFRYERPQK----GRYRQFHQFGVEVIGSDSPLADAE---IIALAAEILKELGIKDFTLEINSLG-- 163 (397)
T ss_pred ccCCCeEEEEEcCeecCCCCCC----CcccceEEcCeeeeCCCCHHHHHH---HHHHHHHHHHHcCCCceEEEecCcc--
Confidence 4567999999999999998887 7999999999999999988 8888 899999999999997 999998874
Q ss_pred cCCChhhHHHHHHHHHHHHHHc----CCC----cEEc-----C----CCCccc--ccchhHHHH----HHhhhh------
Q 006680 391 YLGDLATWEKAEAALTEALNEF----GKP----WQIN-----E----GDGAFY--GPKIDISVS----DALKRK------ 441 (635)
Q Consensus 391 ~lg~~~~~~~a~~~l~~~l~~~----g~~----~~~~-----~----g~~af~--gpkid~~~~----d~l~r~------ 441 (635)
....+-.....+.++|++. +.. +..+ + ....|. +|++...+. +.+...
T Consensus 164 ---i~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 240 (397)
T TIGR00442 164 ---ILEGRLEYREALLRYLDKHLDKLGEDSVRRLEKNPLRILDSKNEKIQELLKEAPKILDFLDEESRAHFEELKELLDA 240 (397)
T ss_pred ---cHHHHHHHHHHHHHHHHHhHhhcCHHHHHHHhhccccCchhhhHHHHHHHhcCHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2222222344455555441 110 0001 0 011221 343221111 111111
Q ss_pred hhhceeeeecCCCeeeeeEEEecC--CC---------------cc----------ccccccccceeeeHHHHHHHHHHHh
Q 006680 442 FQCATLQLDFQLPDRFNLGYSAED--EA---------------KT----------ERPVMIHRAILGSVERMFAILLEHY 494 (635)
Q Consensus 442 ~~~~t~~ld~~l~~~~~L~Y~~~~--e~---------------~~----------~~p~~i~~ai~GgveR~~~~l~e~~ 494 (635)
... .+.+|+.+.. +++||||. ++ .+ ..|. .+++.++||++++|.+
T Consensus 241 ~~~-~i~~dl~~~r--~~~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~a---vGfs~~~~~l~~~l~~-- 312 (397)
T TIGR00442 241 LGI-PYKIDPSLVR--GLDYYTGTVFEFVTDELGAQGTICGGGRYDGLVEELGGPPTPA---VGFAIGIERLLLLLEE-- 312 (397)
T ss_pred cCC-CEEECCcccc--CchhhcceEEEEEECCCCccceeeeccchHHHHHHhCCCCCce---EEeeecHHHHHHHHHh--
Confidence 111 3556666553 79999987 11 11 1122 1344489999999977
Q ss_pred CCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhccccc
Q 006680 495 KGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINI 574 (635)
Q Consensus 495 ~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (635)
.|.+|.|.+|.+|+|++++++...++.++++.||++|+.|+++...++++++
T Consensus 313 ~~~~~~~~~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~~~l~k~---------------------------- 364 (397)
T TIGR00442 313 LGLEPPEESSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGGRKLKKQ---------------------------- 364 (397)
T ss_pred cCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCCCCHHHH----------------------------
Confidence 5778878888999999999888899999999999999999999988899999
Q ss_pred ccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCC
Q 006680 575 YPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQG 613 (635)
Q Consensus 575 ~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~ 613 (635)
+++|+..|++++++||++|.++++|+||++.+|
T Consensus 365 ------~~~a~~~g~~~~i~ig~~e~~~~~v~vrnl~~~ 397 (397)
T TIGR00442 365 ------LKYADKLGARFAVILGEDELANGTVTLKDLETG 397 (397)
T ss_pred ------HHHHHHcCCCEEEEEChhHHhCCeEEEEeCCCC
Confidence 999999999999999999999999999999875
No 25
>PLN02972 Histidyl-tRNA synthetase
Probab=99.91 E-value=2.5e-23 Score=238.35 Aligned_cols=268 Identities=19% Similarity=0.283 Sum_probs=187.0
Q ss_pred cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC---
Q 006680 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE--- 389 (635)
Q Consensus 316 lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~--- 389 (635)
.|+|+|++|++||+++++. +|.|||+|+|++|||..+. +|+| ++.++.++++.||++ |.++|||+.-
T Consensus 416 ~p~KrYyiG~VFR~e~pqk----GR~REF~Q~G~EIIG~~~~~~aDAE---VI~La~E~L~~LGi~df~I~INh~~iL~~ 488 (763)
T PLN02972 416 TSFKRYQIAKVYRRDNPSK----GRYREFYQCDFDIAGVYEPMGPDFE---IIKVLTELLDELDIGTYEVKLNHRKLLDG 488 (763)
T ss_pred CcceEEEeccEEecCCCCC----CCCccceEEeEEEEcCCCcchhhHH---HHHHHHHHHHhCCCCceEEEeCCHHHHHH
Confidence 4899999999999999987 8999999999999997543 7999 999999999999996 9999999861
Q ss_pred --CcCCCh-hhHHHHHHHH------------HHHHHHcCCCcEEcCCCCc---ccccchh--HH-------------HHH
Q 006680 390 --KYLGDL-ATWEKAEAAL------------TEALNEFGKPWQINEGDGA---FYGPKID--IS-------------VSD 436 (635)
Q Consensus 390 --~~lg~~-~~~~~a~~~l------------~~~l~~~g~~~~~~~g~~a---f~gpkid--~~-------------~~d 436 (635)
+.+|.+ +.+......+ .+.+++.|.+-.....-.. +.|+..+ .. ...
T Consensus 489 ILe~lgi~~e~~~~v~~aIdkldk~~le~vk~eL~~~~gLs~e~~~~L~~L~~L~G~~~evLd~L~~~~~~l~~~~~~~~ 568 (763)
T PLN02972 489 MLEICGVPPEKFRTICSSIDKLDKQSFEQVKKEMVEEKGLSNETADKIGNFVKERGPPLELLSKLRQEGSEFLGNASSRA 568 (763)
T ss_pred HHHHcCCCHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhHhhccChHHHH
Confidence 234443 2222211111 1111112221100000000 1121100 00 011
Q ss_pred H---hhhhh------hh-ceeeeecCCCeeeeeEEEecC--CC--------------ccc----------ccccccccee
Q 006680 437 A---LKRKF------QC-ATLQLDFQLPDRFNLGYSAED--EA--------------KTE----------RPVMIHRAIL 480 (635)
Q Consensus 437 ~---l~r~~------~~-~t~~ld~~l~~~~~L~Y~~~~--e~--------------~~~----------~p~~i~~ai~ 480 (635)
+ +...+ .+ ..+.+|+.+.+ +|+||||. |+ .++ .|. -++.
T Consensus 569 aL~eL~~L~~~L~~~gv~~~I~fDlsLvR--GLDYYTGiVFE~~~~g~~~gsIagGGRYD~Lv~~FgG~~vPA---VGFS 643 (763)
T PLN02972 569 ALDELEIMFKALEKSKAIGKIVFDLSLAR--GLDYYTGVIYEAVFKGAQVGSIAAGGRYDNLVGMFSGKQVPA---VGVS 643 (763)
T ss_pred HHHHHHHHHHHHHhcCCCccEEECCcccC--CCcccCceEEEEEEcCCccceeeecCCchhHHHhcCCCCCCE---EEEE
Confidence 1 11111 11 13667777764 89999987 21 111 111 0122
Q ss_pred eeHHHHHHHHHHHhCCCCCC---CCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccce
Q 006680 481 GSVERMFAILLEHYKGKWPF---WLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTY 557 (635)
Q Consensus 481 GgveR~~~~l~e~~~g~~p~---~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~ 557 (635)
-|+||++.+|.++ +..+. ..++.+|+|++.++....++++++++||++|+.++++. .++++++
T Consensus 644 iGIERL~~~L~~~--~~~~~~~~~~~~~dVlV~s~g~~~l~~alkia~~LR~aGI~aE~~~-~~kl~kq----------- 709 (763)
T PLN02972 644 LGIERVFAIMEQQ--EEEKSQVIRPTETEVLVSIIGDDKLALAAELVSELWNAGIKAEYKV-STRKAKH----------- 709 (763)
T ss_pred ecHHHHHHHHHHc--ccCCCCCCCCCCCcEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEeC-CCCHHHH-----------
Confidence 2899999988763 33221 12457899999998889999999999999999999876 6789999
Q ss_pred eeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHH
Q 006680 558 IEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 632 (635)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~ 632 (635)
+++|++.|++|++|+|++|.++|+|+||++.+++|..++++++++++++++.
T Consensus 710 -----------------------~~~A~k~gi~~vVIIGe~E~~~g~VkVKnL~tgeq~~V~~delv~~l~~~l~ 761 (763)
T PLN02972 710 -----------------------LKRAKESGIPWMVLVGEKELSKGFVKLKNLEAGVEEEVDRTCFVQELKAELL 761 (763)
T ss_pred -----------------------HHHHHHCCCCEEEEECchHHhCCeEEEEECCCCcceEeeHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999988775
No 26
>PLN02734 glycyl-tRNA synthetase
Probab=99.90 E-value=4.1e-23 Score=234.07 Aligned_cols=297 Identities=20% Similarity=0.269 Sum_probs=193.0
Q ss_pred CCCcceeeccccCChhhhhhccc-ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchh---------H--
Q 006680 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQI---------K-- 359 (635)
Q Consensus 292 ~~~lqRIyG~~fp~~~~L~esyr-elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~---------~-- 359 (635)
|++-|-| |..-+.|.+..+ .+|++++++|..||+|.+++ +||+|+|||+|.+++.||.++.- +
T Consensus 253 PETAQGi----FvnFk~l~~~~~~klPF~~AQIGk~FRNEIsPR-~gl~R~REF~qaEiE~Fv~P~~k~h~~f~~v~~~~ 327 (684)
T PLN02734 253 PETAQGI----FVNFRDLYYYNGGKLPFAAAQIGQAFRNEISPR-QGLLRVREFTLAEIEHFVDPEDKSHPKFSEVADLE 327 (684)
T ss_pred ccccchh----eeeHHHHHHhcCCCCCeeeeeccHhhhcccCcc-cceeeechhhhhhhheecCcccccccchhhhhhhh
Confidence 5566665 455577888776 79999999999999999998 99999999999999999998621 0
Q ss_pred ------------------------------HH-HHHHHHHHHHHHHHhCCe-EEEEEccC-C-CCcCCChhhHHH-----
Q 006680 360 ------------------------------DE-VRGVLEFIDYAYRIFGFT-YELKLSTR-P-EKYLGDLATWEK----- 400 (635)
Q Consensus 360 ------------------------------~E-~~~~l~~~~~~~~~~G~~-~~l~ls~r-~-~~~lg~~~~~~~----- 400 (635)
.| +.-.+.-...+|..+|++ -.+++... + |...-...|||.
T Consensus 328 l~l~~~~~q~~~~~~~~~t~~eAv~~gii~ne~l~Y~~~r~~~fl~~iGi~~~~lRfRqh~~~EmAHYA~dcwD~E~~~~ 407 (684)
T PLN02734 328 FLLFPREEQLGGQKAKPMRLGEAVSKGIVNNETLGYFIGRTYLFLTKLGIDKERLRFRQHLANEMAHYAADCWDAEIECS 407 (684)
T ss_pred hhcccHhhhhccCCcccccHHHHHHcCccchHHHHHHHHHHHHHHHHcCCCHHHeeecccCcHHHhhhhhccEeEEEecC
Confidence 11 111233344456678885 33343222 1 111222233331
Q ss_pred ---------HH---HHHHHHHHHcCCCcE---------------EcCCCCcccccchh--H-HHHHHhhhh-------hh
Q 006680 401 ---------AE---AALTEALNEFGKPWQ---------------INEGDGAFYGPKID--I-SVSDALKRK-------FQ 443 (635)
Q Consensus 401 ---------a~---~~l~~~l~~~g~~~~---------------~~~g~~af~gpkid--~-~~~d~l~r~-------~~ 443 (635)
|- --|+.--+..|.+.. +.+. ..-.||+.. . .+.+++... ++
T Consensus 408 ~GWiE~vG~AdRs~yDL~~H~~~Sg~~L~~~~~~~ep~~~~~~~~~~~-~~~~g~~fk~~~~~v~~~l~~~~~~~~~~~~ 486 (684)
T PLN02734 408 YGWIECVGIADRSAYDLKAHSDKSKVPLVAHEKFAEPREVEVLVIVPN-KKELGLAFKGDQKVVVEALEAMNEKEAMEMK 486 (684)
T ss_pred CCcEEEEEeccccccchHHHHHhhCCCeEEEeccCCcceeeeEEEecc-hhhhhHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 00 011221222222211 0000 011122211 0 111121110 00
Q ss_pred -----hceeeee-------cCCCe-eeeeEEEecC-CCccccccccccceeeeHHHHHHHHHHHhC----------C-CC
Q 006680 444 -----CATLQLD-------FQLPD-RFNLGYSAED-EAKTERPVMIHRAILGSVERMFAILLEHYK----------G-KW 498 (635)
Q Consensus 444 -----~~t~~ld-------~~l~~-~~~L~Y~~~~-e~~~~~p~~i~~ai~GgveR~~~~l~e~~~----------g-~~ 498 (635)
.+.+.++ |.++. -+.+...+.. .++.-.|.+|. .+.|++|++++++||.. | .|
T Consensus 487 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~iP~VIE--PS~GIgRIl~AilE~s~~~~~~De~R~~L~~ 564 (684)
T PLN02734 487 AKLESKGEAEFYVCTLGKEVEIKKNMVSISKEKKKEHQRVFTPSVIE--PSFGIGRIIYCLFEHSFYTRPGDEQLNVFRF 564 (684)
T ss_pred HhhhhcCceeeeecccCcceeechhheeeeeeeeeecCceecCceEe--cCccHHHHHHHHHHHHhccccCCCcceEEec
Confidence 1112221 22211 1122222222 12344687776 45799999999999754 1 39
Q ss_pred CCCCCCceEEEEecCC--CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhccccccc
Q 006680 499 PFWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYP 576 (635)
Q Consensus 499 p~~lsp~qv~v~p~~~--~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (635)
|+|++|.||.|+|+.. +..++|.+|++.|+++|++|.+|+++.++|||
T Consensus 565 Pp~IAP~qVaIlPL~~~ee~~~~A~eLa~~LR~~GIrVelDd~~~SIGKR------------------------------ 614 (684)
T PLN02734 565 PPLVAPIKCTVFPLVQNQQLNAVAKVISKELTAAGISHKIDITGTSIGKR------------------------------ 614 (684)
T ss_pred CcccCCcEEEEEEecCChHHHHHHHHHHHHHHhCCCEEEEECCCCCHhHH------------------------------
Confidence 9999999999999974 36889999999999999999999999999999
Q ss_pred chhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 577 IRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 577 ~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+++|++.|+||+++||. +|+|+||+|++++|..++++++++.++++++.+
T Consensus 615 ----yrrADeiGIPf~ItIG~----dgtVTIRdRdsgeQ~rV~ldeLv~~I~~li~~~ 664 (684)
T PLN02734 615 ----YARTDELGVPFAVTVDS----DGSVTIRERDSKDQVRVPVEEVASVVKDLTDGR 664 (684)
T ss_pred ----HHHHHHcCCCEEEEECC----CCeEEEEECCCCceEEeeHHHHHHHHHHHHcCC
Confidence 99999999999999996 899999999999999999999999998887653
No 27
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=99.90 E-value=2.7e-23 Score=228.36 Aligned_cols=255 Identities=19% Similarity=0.287 Sum_probs=180.1
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC----
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE---- 389 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~---- 389 (635)
.+|+|++++|++||++.++. +|.|||+|+|+|+||.+++ +|+| ++.++.++++.||+++.+.+|++.-
T Consensus 97 ~~p~r~~y~g~vfR~~~~~~----gr~rE~~Q~g~EiiG~~~~~adaE---vi~la~~~l~~lg~~~~i~l~~~~l~~~i 169 (423)
T PRK12420 97 RLPFKRYEIGKVFRDGPIKQ----GRFREFIQCDVDIVGVESVMAEAE---LMSMAFELFRRLNLEVTIQYNNRKLLNGI 169 (423)
T ss_pred CCCeeEEEEcceECCCCCCC----CccceeEECCeeeECCCCCcccHH---HHHHHHHHHHHCCCCEEEEEcCHHHHHHH
Confidence 46999999999999999887 7999999999999999988 9999 9999999999999999999999641
Q ss_pred -CcCCChhhHHHHH------------HHHHHHHHHcCCCcEE--------cCCC-C-------cccccchhHHHHHHhhh
Q 006680 390 -KYLGDLATWEKAE------------AALTEALNEFGKPWQI--------NEGD-G-------AFYGPKIDISVSDALKR 440 (635)
Q Consensus 390 -~~lg~~~~~~~a~------------~~l~~~l~~~g~~~~~--------~~g~-~-------af~gpkid~~~~d~l~r 440 (635)
..+|..+.+..+. ..+.+.|.+.|.+-.. .-++ . .+..|...- .-+.+..
T Consensus 170 l~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~ 248 (423)
T PRK12420 170 LQAIGIPTELTSDVILSLDKIEKIGIDGVRKDLLERGISEEMADTICNTVLSCLQLSIADFKEAFNNPLVAE-GVNELQQ 248 (423)
T ss_pred HHHcCCChhhhhchhhheechhhcCHHHHHHHHHHcCCCHHHHHHHHHHHhccChhhHHHHHHhccCHHHHH-HHHHHHH
Confidence 2233332221110 1223333333332110 0000 0 011111110 0111211
Q ss_pred hh------h-hceeeeecCCCeeeeeEEEecC--C---------------Cccc------------cccccccceeeeHH
Q 006680 441 KF------Q-CATLQLDFQLPDRFNLGYSAED--E---------------AKTE------------RPVMIHRAILGSVE 484 (635)
Q Consensus 441 ~~------~-~~t~~ld~~l~~~~~L~Y~~~~--e---------------~~~~------------~p~~i~~ai~Ggve 484 (635)
.+ . ...+.+|+.+.. +++||||. | |.++ .|. .+.+-|+|
T Consensus 249 l~~~l~~~g~~~~i~~Dl~~vr--~l~YYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~~~~~~~pA---vGfa~~~~ 323 (423)
T PRK12420 249 LQQYLIALGINENCIFNPFLAR--GLTMYTGTVYEIFLKDGSITSSIGSGGRYDNIIGAFRGDDMNYPT---VGISFGLD 323 (423)
T ss_pred HHHHHHHhCCCCcEEEeccccC--CCcccceeEEEEEecCCCccccccCCccHHHHHHHhCCCCCCCCc---eeEEEcHH
Confidence 11 1 123667777664 89999987 1 1111 111 02222899
Q ss_pred HHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHH-CCCEEEEeCCCCCcCCCCCcccccccceeeeeeh
Q 006680 485 RMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYR-AGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFS 563 (635)
Q Consensus 485 R~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~-~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~ 563 (635)
|++..|... +..+ +|.||+|+|+++. ..|.+++++||+ +|++|++|..+++++++
T Consensus 324 ~l~~~l~~~--~~~~---~~~dvlI~~~~~~--~~a~~ia~~Lr~~~Gi~ve~~~~~~~l~~~----------------- 379 (423)
T PRK12420 324 VIYTALSQK--ETIS---STADVFIIPLGTE--LQCLQIAQQLRSTTGLKVELELAGRKLKKA----------------- 379 (423)
T ss_pred HHHHHHHhc--CCCC---CCceEEEEEcCCH--HHHHHHHHHHHhhcCCeEEEecCCcCHHHH-----------------
Confidence 999887653 3222 6889999998653 469999999999 99999999999999999
Q ss_pred hhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHH
Q 006680 564 CWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDL 623 (635)
Q Consensus 564 ~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l 623 (635)
+++|++.|+||++|||++|.++|+|+||+++++++..|+++++
T Consensus 380 -----------------i~~A~~~g~~~iviig~~e~~~~~v~vr~~~~~~~~~v~~~~~ 422 (423)
T PRK12420 380 -----------------LNYANKENIPYVLIIGEEEVSTGTVMLRNMKEGSEVKVPLSSL 422 (423)
T ss_pred -----------------HHHHHHcCCCEEEEEChhHHhcCeEEEEECCCCceeeeeHHHc
Confidence 9999999999999999999999999999999999999999875
No 28
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=7.5e-23 Score=222.61 Aligned_cols=318 Identities=23% Similarity=0.330 Sum_probs=197.3
Q ss_pred cccceEEeecc-cce---eccCCCCCCcceeeccccCChhhhhhccc-ccceEEeeeccccccccCCCCcCceeeceeee
Q 006680 272 FVKGFGCLKAS-SAY---WRGNKDRESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQ 346 (635)
Q Consensus 272 ~Ik~F~L~k~s-~g~---~L~~p~~~~lqRIyG~~fp~~~~L~esyr-elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q 346 (635)
.+..|.|+--. =|. -+++=.|++-|-+ |..-|.|.+..| .+|++++++|..||+|.+++ +||+|+|||+|
T Consensus 141 ~v~~FNLMF~T~IGp~~~~~~YLRPETAQGi----FvnFk~l~~~~r~klPFgiaQIGKsfRNEISPr-~gl~R~REF~Q 215 (558)
T COG0423 141 EVREFNLMFKTTIGPVEDSLGYLRPETAQGI----FVNFKNLLEFARNKLPFGIAQIGKSFRNEISPR-NGLFRTREFEQ 215 (558)
T ss_pred CcceeeeEEEeeecCCCCcceeecccccchh----hhhhHHHHHHhccCCCeEEEeechhhccccCcc-cceeehhhhhh
Confidence 56667766421 011 1111135556655 455578888776 79999999999999999998 99999999999
Q ss_pred cCEEEEecCch-------------------h-HHH----------------HHHHHHHHHHHHHHhCCe-EEEEEccC-C
Q 006680 347 DDAHIFCRESQ-------------------I-KDE----------------VRGVLEFIDYAYRIFGFT-YELKLSTR-P 388 (635)
Q Consensus 347 ~d~~if~~~~~-------------------~-~~E----------------~~~~l~~~~~~~~~~G~~-~~l~ls~r-~ 388 (635)
.+++.||.+.. . ..+ +.-.+.....++..+|++ =.++.-.. |
T Consensus 216 aEiE~Fv~P~~k~~p~f~~v~~~~l~l~~~~~q~~~~~~EAv~~g~~~n~~~~y~~~~~~~fl~~lGI~~e~lRfrqh~~ 295 (558)
T COG0423 216 AEIEFFVDPEEKEHPKFNEVKDEKLPLLPREAQEEGTEEEAVEEGIVENETLAYFIARTKFFLEDLGIDPEKLRFRQHLP 295 (558)
T ss_pred hheeeEECCCcccCcchhhhhhhhcccccHHHhhhhhhhhhhhcceeechhHHHHHHHHHHHHHHcCCCHHHhhhhhcCh
Confidence 99999998865 1 111 111233344555566775 22332211 1
Q ss_pred -CCcCCChhhHHHHH------------------HHHHHHHHHcCC----------CcEEc----CCCCcccccchhH---
Q 006680 389 -EKYLGDLATWEKAE------------------AALTEALNEFGK----------PWQIN----EGDGAFYGPKIDI--- 432 (635)
Q Consensus 389 -~~~lg~~~~~~~a~------------------~~l~~~l~~~g~----------~~~~~----~g~~af~gpkid~--- 432 (635)
|-..-...|||.-- --|..-.+..|. |..+. .-+-.++||+..-
T Consensus 296 ~E~AHYa~~twD~E~~~~~~gWiE~~GiAdRtdYDL~~H~k~s~~~l~v~~~~~ePk~v~~~~~~~~~~~~gp~~k~~a~ 375 (558)
T COG0423 296 EELAHYSKDTWDAEYKFPFGGWIELVGIADRTDYDLSRHSKFSGEDLTVFREYDEPKEVERWHSKVDLKFLGPEFKKDAK 375 (558)
T ss_pred HHHhhhhhcceeEEEecCCCceEEEEEeecccccchhhhhhhccccceeeeccCCcceeeeeecccchhhcChhhhhhHH
Confidence 11112223333100 000000000000 00000 0011233443311
Q ss_pred HHHHHhhhhhhhceeeee-cCCCe-eeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhC----C-------CCC
Q 006680 433 SVSDALKRKFQCATLQLD-FQLPD-RFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYK----G-------KWP 499 (635)
Q Consensus 433 ~~~d~l~r~~~~~t~~ld-~~l~~-~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~----g-------~~p 499 (635)
.+.+++. ........+| +.++. .+.+.-.....++.-.|.+|.- +-|++|++.++++|.- + ++|
T Consensus 376 ~v~~~~s-e~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~iP~VIEP--SfGidRi~y~~l~~ay~~ee~~e~R~vLrl~ 452 (558)
T COG0423 376 KVAEALS-ELEELEKELNGYEVSKDLVIIEEVEKVTGEKYIPHVIEP--SFGIDRIFYALLEHAYTEEEVEEKRIVLRLP 452 (558)
T ss_pred HHhhhhh-hhhhhhhccCccccccchhheeeeeeccCceecCceecc--CCCchHHHHHHHHHhhcccccccceeEEecC
Confidence 0111111 0000001111 11110 0000000000123345766653 4599999998888742 2 389
Q ss_pred CCCCCceEEEEecCCC--cHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccc
Q 006680 500 FWLSPRQAIVCPVSEK--SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPI 577 (635)
Q Consensus 500 ~~lsp~qv~v~p~~~~--~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (635)
++++|.+|+|+|+..+ ..+.|.+|.+.|++.|+.|++|+++ +|||+
T Consensus 453 p~lAPikvaVlPL~~k~~l~~~a~~i~~~L~~~~~~v~yDdsG-sIGrR------------------------------- 500 (558)
T COG0423 453 PDLAPIKVAVLPLVKKDELVEIAKEIFEKLRELGFNVDYDDSG-SIGRR------------------------------- 500 (558)
T ss_pred cccCceEEEEEeeecccchhHHHHHHHHHHHhcCceEEecCCC-cHhhh-------------------------------
Confidence 9999999999999865 8999999999999999999999986 99999
Q ss_pred hhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHH
Q 006680 578 RVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 632 (635)
Q Consensus 578 ~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~ 632 (635)
++.++..|.||++.|..+.+++++||||+|||.+|..++++||...|++++.
T Consensus 501 ---YrR~DEIGtPfcVTvD~eTleD~tVTiReRDs~~QvRv~i~el~~~l~~~~~ 552 (558)
T COG0423 501 ---YRRQDEIGTPFCVTVDFETLEDNTVTIRERDSMEQVRVKIEELADYLRELIK 552 (558)
T ss_pred ---hhhccccCCceEEEecCCcccCCcEEEeecCchheeeeeHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999988765
No 29
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=8.6e-23 Score=216.28 Aligned_cols=272 Identities=22% Similarity=0.275 Sum_probs=193.0
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC-----
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE----- 389 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~----- 389 (635)
++.|+++.+||...+.-.+ +|+|||+|+|++|-|.-+| .|+| |+..+.++++.||+. |.+++|+|.-
T Consensus 151 ikRy~iAkVyRRd~P~mtr--GR~REFYQcDFDIAG~~d~M~pdaE---~lkiv~e~L~~l~Igd~~iKvNhRkiLdgmf 225 (518)
T KOG1936|consen 151 IKRYHIAKVYRRDQPAMTR--GRYREFYQCDFDIAGQFDPMIPDAE---CLKIVVEILSRLGIGDYGIKVNHRKILDGMF 225 (518)
T ss_pred ceeeeEEEEEeccCchhhc--hhhhhhhccCccccccCCCCCchHH---HHHHHHHHHhhcCccceEEEecHHHHHHHHH
Confidence 7889999999999884322 7999999999999998888 8999 999999999999996 9999999941
Q ss_pred CcCCCh----------------hhHHHHHHHHHHHHHHcCCCc----------EEcCCCC----cccccchhH--HHH--
Q 006680 390 KYLGDL----------------ATWEKAEAALTEALNEFGKPW----------QINEGDG----AFYGPKIDI--SVS-- 435 (635)
Q Consensus 390 ~~lg~~----------------~~~~~a~~~l~~~l~~~g~~~----------~~~~g~~----af~gpkid~--~~~-- 435 (635)
..-|.+ -.|+.... +...+.|+.- ..+.++. -.-+|++.- .-.
T Consensus 226 ~v~GVp~~~frtICSsIDKLdK~pwedVkk---Emv~eKGlsee~ad~igeyv~~~g~~eL~e~l~~d~~l~~n~~a~ea 302 (518)
T KOG1936|consen 226 AVCGVPEDKFRTICSSIDKLDKMPWEDVKK---EMVFEKGLSEEAADRIGEYVSLKGLDELLEKLIADPKLSQNEAAKEA 302 (518)
T ss_pred HHhCCCHHHhhhHHHhhhhhhcCCHHHHHH---HHHHhcCCCHHHHHHHHHHhhhccHHHHHHHHhcCCcccccHHHHHH
Confidence 112322 23544332 2222222211 0110000 001222210 000
Q ss_pred -HHhh------hhhhhce-eeeecCCCeeeeeEEEecC--CCccc-----------------cccccccceee-------
Q 006680 436 -DALK------RKFQCAT-LQLDFQLPDRFNLGYSAED--EAKTE-----------------RPVMIHRAILG------- 481 (635)
Q Consensus 436 -d~l~------r~~~~~t-~~ld~~l~~~~~L~Y~~~~--e~~~~-----------------~p~~i~~ai~G------- 481 (635)
+.++ +.|-|.. ++.|.++++ ||+||||. |+... .|+-+.....|
T Consensus 303 l~dlk~Lf~y~~~fg~s~~isfDlSLAR--GLDYYTGvIyEav~~~~~~~~~a~~~~~~~~~e~~~vGSvaaGGRYDnLv 380 (518)
T KOG1936|consen 303 LADLKQLFEYLEIFGISERISFDLSLAR--GLDYYTGVIYEAVLRGLRLICPAGRYDQAGSTEPGGVGSVAAGGRYDNLV 380 (518)
T ss_pred HHHHHHHHHHHHHcCCcceEEeehHHhc--cchhhhceeeeeeeccccccCcchhhhccccccCCCccccccCcchhhHH
Confidence 1111 2344444 778888774 99999987 22111 12222211122
Q ss_pred -----------------eHHHHHHHHHHHhCCC-CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeC-CCCC
Q 006680 482 -----------------SVERMFAILLEHYKGK-WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT-TDRK 542 (635)
Q Consensus 482 -----------------gveR~~~~l~e~~~g~-~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~-~~~~ 542 (635)
||||+|.+|.+...-. ---.-+..||+|...+........++.+.||.+|+..+.-. .+.+
T Consensus 381 ~mf~~k~~~vPcvG~S~GVeRiFsile~r~~~~~~~iR~t~t~V~V~~~~k~~l~eR~k~v~~Lw~agI~aE~~yk~~~~ 460 (518)
T KOG1936|consen 381 GMFDKKGDKVPCVGQSVGVERIFSILEQRAATVATKIRTTETQVYVAAAGKNLLFERLKVVNALWDAGIKAEYLYKANPK 460 (518)
T ss_pred HHhccccCcCCccceeehHhHHHHHHHHHHHhhhhccccCceEEEEEecCCchHHHHHHHHHHHHhcCcchhhhhhcCcc
Confidence 8999999998865321 11123567999999988889999999999999999999766 4788
Q ss_pred cCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHH
Q 006680 543 IQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIED 622 (635)
Q Consensus 543 l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~ 622 (635)
+-+| +.+|++.|+|+++|+|++|.+.|.|+||+..+++...++.|+
T Consensus 461 ~~~q----------------------------------~~~~e~~~ip~~vi~Ge~El~~G~V~vk~~~~re~~~v~~e~ 506 (518)
T KOG1936|consen 461 LLKQ----------------------------------FQYAEEAGIPLAVILGEEELADGSVKVKNVGTREEVLVKREQ 506 (518)
T ss_pred HHHH----------------------------------HHHHHhcCCCeEEEechhhhcCCeEEEEecccccceeccHHH
Confidence 8899 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 006680 623 LLKHFKEKLEA 633 (635)
Q Consensus 623 l~~~~~~~~~~ 633 (635)
++..++++++.
T Consensus 507 ~v~~l~~~l~~ 517 (518)
T KOG1936|consen 507 FVSELKDLLSQ 517 (518)
T ss_pred HHHHHHHHhcC
Confidence 99999988753
No 30
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.8e-18 Score=177.08 Aligned_cols=352 Identities=18% Similarity=0.288 Sum_probs=217.4
Q ss_pred CeeEEEEEcCCCCCCHhHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCe--Eee
Q 006680 184 EGFYYDAFYGDLGLNPDHFKSIDSEADKAAKQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL--VDL 261 (635)
Q Consensus 184 ~Gfy~d~~~~~~~it~edl~~IE~~m~eiI~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~--iDl 261 (635)
.|+|--+.+ +...-+.-...|..+|+..=.+.|.--.++..+..+--.. .+...-.+||+-|- -.+
T Consensus 42 ~G~yq~LPl-g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgR-----------w~~~gsEl~rl~Dr~gkq~ 109 (457)
T KOG2324|consen 42 PGLYQLLPL-GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGR-----------WDAMGSELFRLHDRKGKQM 109 (457)
T ss_pred CCceeeccc-hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCc-----------ccccchhheEeeccCCCEe
Confidence 788876665 3334566678889999984377777777787765442211 11111223333332 235
Q ss_pred cCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhhhh-cccccceEEeeeccccccccCCCCcCcee
Q 006680 262 CRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH-AFAELPLRLADFGVLHRNEASGALTGLTR 340 (635)
Q Consensus 262 c~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e-syrelPlrv~~vG~lnR~E~~g~l~gLiR 340 (635)
|-+|-- .+..+++- ..... +|+++|+++|++|..||.|.+++ .||+|
T Consensus 110 cL~pTh------------------------EE~iT~lm-------at~~~lsykqlPi~vYQigrKfRDElrpR-fGLlR 157 (457)
T KOG2324|consen 110 CLTPTH------------------------EEDITALM-------ATYIPLSYKQLPIRVYQIGRKFRDELRPR-FGLLR 157 (457)
T ss_pred ccCCch------------------------HHHHHHHH-------HhcCccccccCcEEeeeechhhhhccCcc-ccchh
Confidence 555511 11222210 00111 89999999999999999999998 99999
Q ss_pred eceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcE-
Q 006680 341 VRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQ- 417 (635)
Q Consensus 341 vREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~- 417 (635)
-|||.|.|++.|..+.. +..-+..+.+.++.+|+.+|++ +++...+. -+|..-.- |-.| .-..|.+..
T Consensus 158 gREFlMKDmYsFd~~~etA~qTy~~v~~aY~~iFkqL~~pfVkv~AdsG---~iGG~vSh---Efhl---~~~vgED~l~ 228 (457)
T KOG2324|consen 158 GREFLMKDMYSFDSDEETAQQTYQLVDQAYDRIFKQLGLPFVKVWADSG---DIGGEVSH---EFHL---IHPVGEDTLM 228 (457)
T ss_pred hHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeccc---ccCceeee---eEec---cCccCcccee
Confidence 99999999999999877 8888888999999999999999 45554332 12221000 0000 000000000
Q ss_pred EcCCCC------cccccchhHHHHHHhhh-hhh-h------ceeeeecCCCeeeeeEEEecCCCccccccccccceee-e
Q 006680 418 INEGDG------AFYGPKIDISVSDALKR-KFQ-C------ATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG-S 482 (635)
Q Consensus 418 ~~~g~~------af~gpkid~~~~d~l~r-~~~-~------~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~G-g 482 (635)
..+..| .+-+||+. .+..+.. ..+ . -|..|.=.....||..|.+-. + .|-..|.+++| |
T Consensus 229 ~C~~C~~s~n~e~~~~sk~~--~Cp~C~~~~L~~~~~IEVgHtF~LG~kYS~~lna~f~~~~-g---Kpe~l~MgCyGIG 302 (457)
T KOG2324|consen 229 SCPSCGYSKNSEDLDLSKIA--SCPKCNEGRLTKTKSIEVGHTFLLGTKYSKPLNAKFVNVE-G---KPEFLHMGCYGIG 302 (457)
T ss_pred ecCcCCccCchhhhcCCccc--cCCcccCCCcccccceEEEEEEEeccccccccCceeeeec-C---CcceEEecceecc
Confidence 011111 11122220 0000000 000 0 011111111122444443322 3 35457889999 9
Q ss_pred HHHHHHHHHHHhC---C-CCCCCCCCceEEEE-ecCCCcHHHHHHHHHHHHHC---C---CEEEEeCC-CCCcCCCCCcc
Q 006680 483 VERMFAILLEHYK---G-KWPFWLSPRQAIVC-PVSEKSQPYALQVRDHIYRA---G---YYVDVDTT-DRKIQKKPNSF 550 (635)
Q Consensus 483 veR~~~~l~e~~~---g-~~p~~lsp~qv~v~-p~~~~~~~~a~~v~~~L~~~---G---~~v~~d~~-~~~l~kk~~~~ 550 (635)
|.|++++.+|... | .||..++|.+|.++ |-.......|.+|.++|... | -.+..|++ ..++||+
T Consensus 303 VtRllaAa~evls~~~~lrwP~~iAPy~vcli~pk~~~~~q~~~ev~~el~~~~~~~~l~~~iLlddr~~ltiG~R---- 378 (457)
T KOG2324|consen 303 VTRLLAAAAEVLSDDKGLRWPSLIAPYKVCLIGPKKGSKSQRAQEVISELLNDEAVGNLHGEILLDDREELTIGKR---- 378 (457)
T ss_pred HHHHHHHHHHHhccccccccccccCcceeEEeccCCcchhhhHHHHHHHhhcchhhhhhccceeccchhhhhhHHh----
Confidence 9999999998753 3 59999999999554 54555566788888877653 1 13456664 7899999
Q ss_pred cccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEc-ccccccCeEEEEEcCCCceecccHHHHHHHHH
Q 006680 551 VHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVG-EEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 628 (635)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG-~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~ 628 (635)
+++|++.||||+|||| ..-..+..+.|+....|+......+.+.+.+.
T Consensus 379 ------------------------------i~dA~~lG~PfviVvg~s~~~~~~~~EV~~~~~ge~~~l~~~~~~~l~~ 427 (457)
T KOG2324|consen 379 ------------------------------IKDANRLGIPFVIVVGNSASWDNPEIEVRTIRWGESAELDKDGFMKLLS 427 (457)
T ss_pred ------------------------------hhhHHhcCCCEEEEEcccccCCCceEEEEEeecCceeccchhhHHHHhh
Confidence 9999999999999999 66777889999999999877777776665543
No 31
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.
Probab=99.75 E-value=6.2e-19 Score=182.30 Aligned_cols=145 Identities=21% Similarity=0.368 Sum_probs=120.4
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEE-EecCchhHHHHHHHHHHHHHHHHHh-CCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~~~~~~~~E~~~~l~~~~~~~~~~-G~~~~l~ls~r~ 388 (635)
.+|++||++++++|.+||+|.++. .|++|+|||+|+|+|+ ||+++++++|+..+++++.++|+.| |++|.+.....+
T Consensus 113 ~s~r~LPlr~~~~~~~fR~E~~~~-~Gl~R~reF~~~d~h~~~~~~e~~~~~~~~~~~~~~~i~~~llgl~~~~~~~~~~ 191 (261)
T cd00778 113 RSYRDLPLKINQWVNVFRWETKTT-RPFLRTREFLWQEGHTAHATEEEAEEEVLQILDLYKEFYEDLLAIPVVKGRKTEW 191 (261)
T ss_pred cchhhcCHHHHhhhhhccCCCCCC-CceeEeeeeeeeceeeccCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcc
Confidence 388999999999999999999998 8999999999999995 8999999999999999999999999 999766543333
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhcee-eeecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~-~ld~~l~~~~~L~Y~~~~e~ 467 (635)
+++.|...+| +++..+. .++.++++++ ++|+..|.|||+.|.+.+ +
T Consensus 192 d~~~~a~~~~------------------------------~ie~~~p--~~~~~ev~s~~~l~~~~s~r~~i~y~~~~-g 238 (261)
T cd00778 192 EKFAGADYTY------------------------------TIEAMMP--DGRALQSGTSHNLGQNFSKAFDIKYQDKD-G 238 (261)
T ss_pred ccCCCCccce------------------------------EEEEEee--CCCEEEEEeccccccccchhcCCEEECCC-C
Confidence 5555555444 3444443 5788999998 799999999999999876 5
Q ss_pred ccccccccccceeeeHHHHHHHHHH
Q 006680 468 KTERPVMIHRAILGSVERMFAILLE 492 (635)
Q Consensus 468 ~~~~p~~i~~ai~GgveR~~~~l~e 492 (635)
+... +|++++|+.+|++++|+-
T Consensus 239 ~~~~---~h~~~~g~~~R~i~ali~ 260 (261)
T cd00778 239 QKEY---VHQTSWGISTRLIGAIIM 260 (261)
T ss_pred CCcC---cEEecccHHHHHHHHHHh
Confidence 4443 488999999999999863
No 32
>cd00862 ProRS_anticodon_zinc ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.
Probab=99.74 E-value=7.2e-18 Score=168.23 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=98.5
Q ss_pred CCCCCCCCceEEEEecCCC------cHHHHHHHHHHHHHCCCEEEEeCCCC-CcCCCCCcccccccceeeeeehhhhhhh
Q 006680 497 KWPFWLSPRQAIVCPVSEK------SQPYALQVRDHIYRAGYYVDVDTTDR-KIQKKPNSFVHARSTYIEVVFSCWEELV 569 (635)
Q Consensus 497 ~~p~~lsp~qv~v~p~~~~------~~~~a~~v~~~L~~~G~~v~~d~~~~-~l~kk~~~~~~~~~~~~~~~~~~~~~~~ 569 (635)
.||+|++|.||+|+|++.+ ..++|.+|++.|+++|++|++|+++. ++++|
T Consensus 3 vlP~~iAP~qVvIipi~~~~~~~~~~~~~a~~i~~~Lr~~Girv~~D~r~~~s~g~K----------------------- 59 (202)
T cd00862 3 VLPPRVAPIQVVIVPIGIKDEKREEVLEAADELAERLKAAGIRVHVDDRDNYTPGWK----------------------- 59 (202)
T ss_pred cCChhhcCceEEEEEecCCccchHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHhHH-----------------------
Confidence 5999999999999999866 78999999999999999999999887 99999
Q ss_pred cccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 570 AGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 570 ~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+++|++.|+||+++||++|+++|+|+|++|+++++..++++++++.+.+++++.
T Consensus 60 -----------~~~ae~~GvP~~I~IG~~Ele~g~V~v~~Rd~~ek~~v~~~el~~~i~~ll~~i 113 (202)
T cd00862 60 -----------FNDWELKGVPLRIEIGPRDLEKNTVVIVRRDTGEKKTVPLAELVEKVPELLDEI 113 (202)
T ss_pred -----------HHHHHhCCCCEEEEECcchhhCCEEEEEEecCCcceEEEHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877653
No 33
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.73 E-value=1.7e-17 Score=152.35 Aligned_cols=100 Identities=21% Similarity=0.348 Sum_probs=95.7
Q ss_pred CCCCCCCCceEEEEecC--CCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhccccc
Q 006680 497 KWPFWLSPRQAIVCPVS--EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINI 574 (635)
Q Consensus 497 ~~p~~lsp~qv~v~p~~--~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (635)
.||+|++|.+|+|+|++ ++...+|.++++.||++|++|++|.+ ++++||
T Consensus 19 ~~P~~lap~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~-~sl~kq---------------------------- 69 (121)
T cd00858 19 RLPPALAPIKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS-GSIGRR---------------------------- 69 (121)
T ss_pred EcCCCcCCcEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC-CCHHHH----------------------------
Confidence 39999999999999999 88899999999999999999999999 999999
Q ss_pred ccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 575 YPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 575 ~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++|.++|+|+||+++++++..++++++.+.+.+++
T Consensus 70 ------lk~A~k~g~~~~iiiG~~e~~~~~v~lk~l~~~~~~~v~l~~l~~~l~~~~ 120 (121)
T cd00858 70 ------YARQDEIGTPFCVTVDFDTLEDGTVTIRERDSMRQVRVKIEELPSYLRELI 120 (121)
T ss_pred ------HHHhHhcCCCEEEEECcCchhCCEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998887664
No 34
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=99.72 E-value=5.3e-18 Score=170.86 Aligned_cols=152 Identities=26% Similarity=0.284 Sum_probs=129.7
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCCc
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKY 391 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~~ 391 (635)
+|+++|++++++|.+||+|.++. .|++|+|||+|.|+|+||.+++..++...+++++.++|+.+|+++.+.++++++..
T Consensus 83 ~~~~lP~r~~~~g~~fR~E~~~~-~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl~~~i~~~~~~~~~ 161 (235)
T cd00670 83 SYRALPLRLDQIGPCFRHEPSGR-RGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGLPVRVVVADDPFFG 161 (235)
T ss_pred cchhcCeeeeeecccccCCCCCC-CCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEccChhhc
Confidence 56789999999999999999987 88999999999999999999776666666999999999999999999998887544
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHh-hhhhhhceeeeecCCCeeeeeEEEecCCCccc
Q 006680 392 LGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDAL-KRKFQCATLQLDFQLPDRFNLGYSAEDEAKTE 470 (635)
Q Consensus 392 lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l-~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~ 470 (635)
.|.. +|.+++++|++|+.+.+.. |+.+++++.+.+++.+.++..-|.+.+ ++..
T Consensus 162 ~~~~------------------------~~~~~~~~~~~d~e~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 216 (235)
T cd00670 162 RGGK------------------------RGLDAGRETVVEFELLLPLPGRAKETAVGSANVHLDHFGASFKIDED-GGGR 216 (235)
T ss_pred cCCc------------------------cccccccCCceEEEEEecCCCCceeeeEEEeecchhhhhccEEEccC-CCce
Confidence 3332 5566788999999988888 899999999999998888777776654 5566
Q ss_pred cccccccceeeeHHHHHHHHH
Q 006680 471 RPVMIHRAILGSVERMFAILL 491 (635)
Q Consensus 471 ~p~~i~~ai~GgveR~~~~l~ 491 (635)
.|.++|.+ ||+||++++|+
T Consensus 217 ~~~~~~~~--~~~eR~l~all 235 (235)
T cd00670 217 AHTGCGGA--GGEERLVLALL 235 (235)
T ss_pred eeEEEeCc--cHHHHHHHHHC
Confidence 79989877 89999999874
No 35
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=99.70 E-value=2e-17 Score=144.20 Aligned_cols=91 Identities=31% Similarity=0.623 Sum_probs=88.3
Q ss_pred eEEEEecCC---CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHH
Q 006680 506 QAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVR 582 (635)
Q Consensus 506 qv~v~p~~~---~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 582 (635)
||+|+|++. +..+||.++++.|+++|++|++|+++.+++|| ++
T Consensus 1 qv~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~----------------------------------~~ 46 (94)
T PF03129_consen 1 QVVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDDSDKSLGKQ----------------------------------IK 46 (94)
T ss_dssp SEEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEESSSSTHHHH----------------------------------HH
T ss_pred CEEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCchhHH----------------------------------HH
Confidence 799999999 88999999999999999999999999999999 99
Q ss_pred HHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHH
Q 006680 583 EAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 630 (635)
Q Consensus 583 ~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~ 630 (635)
+|++.|+||++|||++|.++|+|+||+|+++++..|++++++++|+++
T Consensus 47 ~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~ 94 (94)
T PF03129_consen 47 YADKLGIPFIIIIGEKELENGTVTVKDRDTGEQETVSLEELIEYLKEN 94 (94)
T ss_dssp HHHHTTESEEEEEEHHHHHTTEEEEEETTTTEEEEEECCHHHHHHHHH
T ss_pred HHhhcCCeEEEEECchhHhCCEEEEEECCCCcEEEEEHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999874
No 36
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=99.70 E-value=1.6e-16 Score=179.27 Aligned_cols=135 Identities=19% Similarity=0.309 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCce-EeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHH
Q 006680 151 RDTFWHSSAHILGQAIEQQYGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQA 227 (635)
Q Consensus 151 ~~vy~hS~ahlL~~Av~~lfg~~L-~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeA 227 (635)
.-..|||++|||++|++++||.++ ..|..+. .+++||||.. ..++|++++++||++|+++| ++||+..+++++||
T Consensus 452 ~~~r~HTAtHLL~~ALr~vlG~~v~q~Gs~v~-~d~~r~DF~~-~~~it~edL~~IE~~vNeiI~~n~pV~~~~~s~eEA 529 (594)
T PRK01584 452 ETTKLHTATHLLHKALRLVLGDHVRQKGSNIT-AERLRFDFSH-PEKMTDDEIKKVEDIVNLQIKNDLSVKKEVMSLEEA 529 (594)
T ss_pred cHHHHHHHHHHHHHHHHHHcCccceeecCCcC-CCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHH
Confidence 467799999999999999998764 4564443 2899999987 46899999999999999999 99999999999999
Q ss_pred HHHhhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeec
Q 006680 228 LEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYG 300 (635)
Q Consensus 228 le~F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG 300 (635)
++++.. .++... -++.|+||++|++ +++|.||||+|||+|+.|+|++.++ ......||.+
T Consensus 530 ~~~~~~-----~lf~e~-y~~~VRVV~Igd~d~elCGGTHV~nTgeIG~fkI~s~~s-------~g~GvrRI~a 590 (594)
T PRK01584 530 REKGAM-----ALFGEK-YEDIVKVYEIDGFSKEVCGGPHVENTGELGTFKIQKEQS-------SSSGVRRIRA 590 (594)
T ss_pred Hhcchh-----hhcccc-CCCcEEEEEECCeeeeCCCCCCCCCcccCceEEEEeccc-------ccCCeEEEEE
Confidence 996432 233321 2468999999998 8999999999999999999999765 3456667754
No 37
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=2.3e-16 Score=174.97 Aligned_cols=276 Identities=25% Similarity=0.370 Sum_probs=186.0
Q ss_pred hhcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 310 KHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 310 ~esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
-.||++||+++|++...||+|.+++ .||+|.|||+|.|+|.|..+.. ++.++..+++....+|..+|+.+..+-.+
T Consensus 122 i~SYkdLPl~lYQi~~kfRdE~rpr-~gllR~REF~mkdaySfh~~~e~a~~~y~~~~~~Y~~if~~i~l~~~~~~ad-- 198 (500)
T COG0442 122 IRSYKDLPLKLYQIQSKFRDEKRPR-FGLLRGREFLMKDAYSFHADEEDAEETYEKMLDAYSRIFLRLPLIFGPVPAD-- 198 (500)
T ss_pred hhhhhhCCcceeeeeeEEeccccCC-CCccchheeeecccccccCCHHHHHHHHHHHHHHHHHHHHhCCceEEeeccc--
Confidence 4599999999999999999999988 9999999999999999999866 99999999999999999988876655422
Q ss_pred CCcCCChhhHH-----------------HHHHHHHHHH-HH-----cCCC--------cEE----------cCCC-Cccc
Q 006680 389 EKYLGDLATWE-----------------KAEAALTEAL-NE-----FGKP--------WQI----------NEGD-GAFY 426 (635)
Q Consensus 389 ~~~lg~~~~~~-----------------~a~~~l~~~l-~~-----~g~~--------~~~----------~~g~-~af~ 426 (635)
++++|...+++ ..-+-+..+. +. -+.+ |-+ -.|| ..+.
T Consensus 199 ~g~~Gg~~S~eF~~l~pd~ge~qi~ts~~y~aN~e~a~~~~~~~~~~~~~~~~v~t~s~~~s~r~~~~~i~i~GDn~G~v 278 (500)
T COG0442 199 EGFIGGSYSHEFEALMPDGGEDQIATSHHYGANFEKAFIDIKFEDEEEGELEYVHTTSYGISTRIIGAAILIHGDNEGLV 278 (500)
T ss_pred CCCCCCccceEEEEEccCCCccEEEEecchHHhHHHhccCCCccccccccceEecccceEEEeeeeeEEEEEecCCCCcc
Confidence 23444322210 0001111111 10 0000 110 1232 2344
Q ss_pred ccchh--HH-------HH--------HHhhhhhhh------ceeeee----------------cCCCeeeeeE-------
Q 006680 427 GPKID--IS-------VS--------DALKRKFQC------ATLQLD----------------FQLPDRFNLG------- 460 (635)
Q Consensus 427 gpkid--~~-------~~--------d~l~r~~~~------~t~~ld----------------~~l~~~~~L~------- 460 (635)
||++- .+ +. -..+|.+.. .....| ..+|-+|.|+
T Consensus 279 ~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~kl~~~e~ieVghif~lG~kyse~~ 358 (500)
T COG0442 279 LPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFKLNIWEGIEVGHIFELGTKYSEAM 358 (500)
T ss_pred CCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCceeeeeeccccCEEEEECchhhhhC
Confidence 55421 10 00 011122211 011112 2334444332
Q ss_pred ---EEecCCCccccccccccceee-eHHHHHHHHHHHhC---C-CCCCCCCCceEEEEecCCC---cHHHHHHHHHHHHH
Q 006680 461 ---YSAEDEAKTERPVMIHRAILG-SVERMFAILLEHYK---G-KWPFWLSPRQAIVCPVSEK---SQPYALQVRDHIYR 529 (635)
Q Consensus 461 ---Y~~~~e~~~~~p~~i~~ai~G-gveR~~~~l~e~~~---g-~~p~~lsp~qv~v~p~~~~---~~~~a~~v~~~L~~ 529 (635)
+...+ ++ +.|. +.+.+| |++|+++.++|+.. | .||...+|+++.|+++... ....|.++...|..
T Consensus 359 ~a~v~~r~-g~-~~~~--~mg~ygigvsr~v~a~ieq~~d~~gi~w~~a~apf~~~iv~~n~~~~~~~~~~~~~~~~l~~ 434 (500)
T COG0442 359 NATVLDRD-GK-EQPK--TMGCYGIGVSRLVAALLEQIHDENGIIWPKAIAPFDVHIVPVNTKDFKQAEAAEKLYVELPW 434 (500)
T ss_pred eeEEEecC-CC-ccce--EEEehhhhhhhHHHHHHHHhcccccCccccccCcceeEEEEcCchhHHHHHHhhhHHHHHHh
Confidence 22222 22 2222 234555 99997777777654 5 4997789999999999753 33445667778888
Q ss_pred CC-CEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEE
Q 006680 530 AG-YYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVR 608 (635)
Q Consensus 530 ~G-~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr 608 (635)
+| ..|.+|+++...|.+ +..|++.|+||.+++|++ .+.|.|.+|
T Consensus 435 ~G~~e~~~ddr~er~g~k----------------------------------~~~a~liGiP~~~~~g~~-~~~g~~e~k 479 (500)
T COG0442 435 CGTVEVLLDDRDERPGVK----------------------------------FADADLIGIPLRIVVGKR-LAEGEVEVK 479 (500)
T ss_pred CCchhhhhhhhccccCcc----------------------------------ccCCeEecccceeeeccc-ccCCceeEE
Confidence 99 999999999999999 999999999999999999 888999999
Q ss_pred EcCCCceecccHHHHHHHH
Q 006680 609 VRDQGDHSNMSIEDLLKHF 627 (635)
Q Consensus 609 ~~~~~~~~~~~~e~l~~~~ 627 (635)
.|.+|+...++++.++..+
T Consensus 480 ~r~~ge~~~~~~~~l~~~~ 498 (500)
T COG0442 480 CRKCGEKEAVTIEALFARL 498 (500)
T ss_pred ecCCCchhhccHHHHHHHh
Confidence 9999999999988888765
No 38
>PRK14938 Ser-tRNA(Thr) hydrolase; Provisional
Probab=99.68 E-value=1.3e-16 Score=170.33 Aligned_cols=113 Identities=27% Similarity=0.533 Sum_probs=104.6
Q ss_pred HHHHHHHHHHH-h---CCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCccccccccee
Q 006680 483 VERMFAILLEH-Y---KGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYI 558 (635)
Q Consensus 483 veR~~~~l~e~-~---~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~ 558 (635)
++|++..++.+ + -|+||+|++|.||+|+|++++..++|.++++.||++|++|++|.++++++||
T Consensus 249 ~~r~~~~~L~~a~~e~~~~LPpwLAP~qV~IIpl~eel~e~AlkLA~eLR~aGIrVeiDl~srSLgKQ------------ 316 (387)
T PRK14938 249 VGLLVYYFLLESIRKQPPTLPDWLNPIQVRILPVKKDFLDFSIQVAERLRKEGIRVNVDDLDDSLGNK------------ 316 (387)
T ss_pred ecHHHHHHHHHhhhHHhCcCCCccCcceEEEEEeChHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH------------
Confidence 78877666544 3 3899999999999999999888899999999999999999999999999999
Q ss_pred eeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHH
Q 006680 559 EVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 629 (635)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~ 629 (635)
+++|++.|+||++|||++|.++|+|+||+|++++|..++++++.+.+++
T Consensus 317 ----------------------iK~AdK~GaPfvIIIGedEle~gtVtIKdrdTgEQ~~IsLdELie~Lkk 365 (387)
T PRK14938 317 ----------------------IRRAGTEWIPFVIIIGEREVKTSTLTVKIRANNEQKSMTVEELVKEIKR 365 (387)
T ss_pred ----------------------HHHHHHcCCCEEEEECchhhhCCeEEEEECCCCceEEEeHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999888764
No 39
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.67 E-value=2.7e-16 Score=136.69 Aligned_cols=90 Identities=27% Similarity=0.459 Sum_probs=85.8
Q ss_pred CceEEEEecCC---CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhh
Q 006680 504 PRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVS 580 (635)
Q Consensus 504 p~qv~v~p~~~---~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (635)
|+||+|+|++. +..++|.++++.||++|++|++|+++++++++
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~---------------------------------- 46 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDRNERPGVK---------------------------------- 46 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECCCCCcccc----------------------------------
Confidence 78999999987 57889999999999999999999999999999
Q ss_pred HHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHH
Q 006680 581 VREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 627 (635)
Q Consensus 581 ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~ 627 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.+
T Consensus 47 i~~a~~~g~~~~iiiG~~e~~~~~v~vk~~~~~~~~~~~~~~~~~~l 93 (94)
T cd00861 47 FADADLIGIPYRIVVGKKSAAEGIVEIKVRKTGEKEEISIDELLEFL 93 (94)
T ss_pred hhHHHhcCCCEEEEECCchhhCCEEEEEECCCCcceEEeHHHHHHhh
Confidence 99999999999999999999999999999999999999999997765
No 40
>KOG4163 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.3e-17 Score=173.87 Aligned_cols=263 Identities=23% Similarity=0.327 Sum_probs=182.5
Q ss_pred cCChhhhhhcccccceEEeeeccccccccCCCCcCceeeceeeecCEE-EEecCchhHHHHHHHHHHHHHHHHHh-CCeE
Q 006680 303 YPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDEVRGVLEFIDYAYRIF-GFTY 380 (635)
Q Consensus 303 fp~~~~L~esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~~~~~~~~E~~~~l~~~~~~~~~~-G~~~ 380 (635)
+|.-.+--+|||+||+++.++-++-|.|-++. ..++|.|||...+-| .|.+...++.|+..+|++...+|..+ -++.
T Consensus 171 yp~yakWi~ShRDLPlkLNQW~nVvRWEfk~p-~PFlRtrEFLWQEGHTAfat~~eA~eEvlqiLdlYa~vy~ellAiPV 249 (551)
T KOG4163|consen 171 YPYYAKWIQSHRDLPLKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHTAFATPEEAEEEVLQILDLYARVYEELLAIPV 249 (551)
T ss_pred cHHHHHHHHhhccCchhhhhhhhheeeeccCC-CcchhhhHHHHhcCcchhCCHhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 45556777899999999999999999999976 788999999877777 56677779999999999999999654 2221
Q ss_pred EEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeee
Q 006680 381 ELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNL 459 (635)
Q Consensus 381 ~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L 459 (635)
.---.+..|+|.|.+ +... -.||. ...||..|.+|.. |.-+.+.-|++
T Consensus 250 vkGrKse~EkFaGgd--------------------~Ttt--vEa~i---------~~~GrgiQgaTSH~LGQNFSkmF~i 298 (551)
T KOG4163|consen 250 VKGRKSEKEKFAGGD--------------------YTTT--VEAFI---------PCSGRGIQGATSHHLGQNFSKMFEI 298 (551)
T ss_pred ccCccchhhhccCCc--------------------ceEE--Eeeee---------ccccccccccchhhhhHHHHHhhce
Confidence 100001112332221 1100 00111 1123333444332 22222334555
Q ss_pred EEEecCCCccccccccccceeeeHHHHHHHHHHHh---CC-CCCCCCCCceEEEEecCC----------CcHHHHHHHHH
Q 006680 460 GYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY---KG-KWPFWLSPRQAIVCPVSE----------KSQPYALQVRD 525 (635)
Q Consensus 460 ~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~---~g-~~p~~lsp~qv~v~p~~~----------~~~~~a~~v~~ 525 (635)
.|-+..++.. -. +-.-..|=-.|.+.+++.-+ .| .+|+.++|.||+|+|++- ...+++..|..
T Consensus 299 ~~ed~~~g~~--~f-v~QnSWg~sTRtiGvmiM~HgDdkGLvLPPrVA~vQvVvvP~git~~~s~~~~~~l~~a~~~v~~ 375 (551)
T KOG4163|consen 299 VFEDPGEGEK--EF-VWQNSWGLSTRTIGVMIMTHGDDKGLVLPPRVAPVQVVVVPVGITDATSEEDKQELLDACSAVES 375 (551)
T ss_pred eecCCCccch--hh-eeecccccccceeeEEEEEecCCcccccCCcccceEEEEEeccccccCchHHHHHHHHHHHHHHH
Confidence 5544321111 11 11112333344444443322 24 589999999999999872 24678999999
Q ss_pred HHHHCCCEEEEeCC-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCe
Q 006680 526 HIYRAGYYVDVDTT-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQ 604 (635)
Q Consensus 526 ~L~~~G~~v~~d~~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~ 604 (635)
.|..+|++++.|++ +.+.|.| +...++.|+|..|=||.+.+++++
T Consensus 376 ~L~~~giR~~~D~rDnytpGwK----------------------------------fnhwElkGVPlRiEiGPrD~~~~q 421 (551)
T KOG4163|consen 376 RLLGAGIRAEADLRDNYTPGWK----------------------------------FNHWELKGVPLRIEIGPRDLASNQ 421 (551)
T ss_pred HHhccCceEeecccccCCCCcc----------------------------------ccceeecCceeEEEeccchhhhCe
Confidence 99999999999997 7899999 888889999999999999999999
Q ss_pred EEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 605 VSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 605 V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
|.+-.||+++...|++++|.+.++++|++-
T Consensus 422 v~~VrRd~~~K~~v~~~~l~~~v~elLe~i 451 (551)
T KOG4163|consen 422 VVAVRRDTGEKKDVSLGDLEKTVKELLEKI 451 (551)
T ss_pred EEEEEccCCcccccCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998763
No 41
>KOG2298 consensus Glycyl-tRNA synthetase and related class II tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=2.3e-16 Score=169.16 Aligned_cols=120 Identities=22% Similarity=0.303 Sum_probs=111.1
Q ss_pred eeHHHHHHHHHHHhC---C-------CCCCCCCCceEEEEecCC--CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCC
Q 006680 481 GSVERMFAILLEHYK---G-------KWPFWLSPRQAIVCPVSE--KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPN 548 (635)
Q Consensus 481 GgveR~~~~l~e~~~---g-------~~p~~lsp~qv~v~p~~~--~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~ 548 (635)
-|+-|++..|.||.- | .+|+-++|.++.|.|++. +..+.+..|.+.|+++|+.+-+|+++.+||++
T Consensus 464 fGiGRI~Y~l~EHsF~R~~de~R~~~sfpp~vAPiK~~v~pls~n~ef~pv~~~ls~~L~~~gis~kvdds~~SIGrr-- 541 (599)
T KOG2298|consen 464 FGIGRISYQLTEHSFTRKGDEQRKVLSFPPLVAPIKVALDPLSPNLEFRPVCQGLSNELTENGISVKVDDSSSSIGRR-- 541 (599)
T ss_pred chhhHHHHHHHhhhhccCcccccceeccCccccceEEEEEeccCchhHHHHHHHHHHHHHhCCCeEEecCCCCcHhhh--
Confidence 389999999999952 2 388889999999999985 67999999999999999999999999999999
Q ss_pred cccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHH
Q 006680 549 SFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 628 (635)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~ 628 (635)
+..-+..|+||-+.|..+.+++++||+|.||+..|..++++++...+.
T Consensus 542 --------------------------------YAr~DElgipFgiTvDfdtlk~~tVTlReRdS~~QvR~~i~e~~s~v~ 589 (599)
T KOG2298|consen 542 --------------------------------YARTDELGIPFGVTVDFDTLKNGTVTLRERDSTMQVRMHISKLKSFLI 589 (599)
T ss_pred --------------------------------hhccccccCceEEEEchhhhcCceEEEeecccHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred HHHHhc
Q 006680 629 EKLEAF 634 (635)
Q Consensus 629 ~~~~~~ 634 (635)
+....+
T Consensus 590 ~~~~g~ 595 (599)
T KOG2298|consen 590 KYISGA 595 (599)
T ss_pred HHhccc
Confidence 887654
No 42
>cd02426 Pol_gamma_b_Cterm C-terminal domain of mitochondrial DNA polymerase gamma B subunit, which is required for processivity. Polymerase gamma replicates and repairs mitochondrial DNA. The c-terminal domain of its B subunit is strikingly similar to the anticodon-binding domain of glycyl tRNA synthetase.
Probab=99.63 E-value=1.2e-15 Score=141.93 Aligned_cols=102 Identities=16% Similarity=0.198 Sum_probs=95.1
Q ss_pred CCCCCCCCceEEEEecC---CCcHHHHHHHHHHHHHCCCEEEEeCCCC---CcCCCCCcccccccceeeeeehhhhhhhc
Q 006680 497 KWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDR---KIQKKPNSFVHARSTYIEVVFSCWEELVA 570 (635)
Q Consensus 497 ~~p~~lsp~qv~v~p~~---~~~~~~a~~v~~~L~~~G~~v~~d~~~~---~l~kk~~~~~~~~~~~~~~~~~~~~~~~~ 570 (635)
.||..++|+||.|+|+. ++..++|.++++.|+++|++|.+|+++. ++|+|
T Consensus 20 ~~P~~iAP~qV~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~D~r~~~~~~~G~k------------------------ 75 (128)
T cd02426 20 KLHPCLAPYKVAIDCGKGDTAELRDLCQGLKNELREAGLSVWPGYLETQHSSLEQL------------------------ 75 (128)
T ss_pred ECCCCCCCeEEEEEeccCChHHHHHHHHHHHHHHHHcCCEEEeccCcccccCHHHH------------------------
Confidence 59999999999999994 3577889999999999999999999765 89999
Q ss_pred ccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHH
Q 006680 571 GINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 632 (635)
Q Consensus 571 ~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~ 632 (635)
+++|++.|+||.|+||++.+++|+|++|+|+++++..++++++.+.+.+++.
T Consensus 76 ----------~~~~dliGiP~~I~IG~~~l~~g~vei~~Rdt~~k~~v~~~~l~~~i~~~~~ 127 (128)
T cd02426 76 ----------LDKYDEMGVLFTLLISEQTLENGLLQLRSRDTTLKETIHISDLPDYLLRYIA 127 (128)
T ss_pred ----------HHhhhhcCCCEEEEECCCcccCCEEEEEECCCCceEEEeHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999987764
No 43
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.58 E-value=1.3e-14 Score=158.38 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=135.8
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC---
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE--- 389 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~--- 389 (635)
..|+|++++|++||++.++. +|.|||+|+|+|+||.+++ +|+| ++.++.++++.+|++ +.++|+++.-
T Consensus 96 ~~p~r~~y~g~vfR~~~~~~----gr~ref~Q~g~EiiG~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~i~~~~i~~~ 168 (391)
T PRK12292 96 PGPLRLCYAGNVFRAQERGL----GRSREFLQSGVELIGDAGLEADAE---VILLLLEALKALGLPNFTLDLGHVGLFRA 168 (391)
T ss_pred CCCeEEEeeceeeecCCCcC----CCccchhccceEEeCCCCchHHHH---HHHHHHHHHHHcCCCCeEEEeccHHHHHH
Confidence 56899999999999999988 8999999999999999988 9999 999999999999996 9999998751
Q ss_pred --CcCCChhhHHHHHHHHHHHHHHcCCC----c--EEcCCCC-------cccccc--------h--hHHHH---HHhhhh
Q 006680 390 --KYLGDLATWEKAEAALTEALNEFGKP----W--QINEGDG-------AFYGPK--------I--DISVS---DALKRK 441 (635)
Q Consensus 390 --~~lg~~~~~~~a~~~l~~~l~~~g~~----~--~~~~g~~-------af~gpk--------i--d~~~~---d~l~r~ 441 (635)
+.+|.++.+. ..+..+|++.... + .+.+... ...|+. + +.... +.+...
T Consensus 169 il~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~~~~~~~~~~~l~~L~~l 245 (391)
T PRK12292 169 LLEAAGLSEELE---EVLRRALANKDYVALEELVLDLSEELRDALLALPRLRGGREVLEEARKLLPSLPIKRALDELEAL 245 (391)
T ss_pred HHHHcCCCHHHH---HHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 2344443221 1222233222100 0 0000000 001210 0 00001 111111
Q ss_pred hh-------hceeeeecCCCeeeeeEEEecC--C-------------Cccc---------cccccccceeeeHHHHHHHH
Q 006680 442 FQ-------CATLQLDFQLPDRFNLGYSAED--E-------------AKTE---------RPVMIHRAILGSVERMFAIL 490 (635)
Q Consensus 442 ~~-------~~t~~ld~~l~~~~~L~Y~~~~--e-------------~~~~---------~p~~i~~ai~GgveR~~~~l 490 (635)
++ ...+.+|+.+.. +++||||. | |.++ .|. .+..-|+||++.+
T Consensus 246 ~~~l~~~~~~~~i~~D~~lvr--gl~YYtG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pA---vGfai~ldrl~~~- 319 (391)
T PRK12292 246 AEALEKYGYGIPLSLDLGLLR--HLDYYTGIVFEGYVDGVGNPIASGGRYDDLLGRFGRARPA---TGFSLDLDRLLEL- 319 (391)
T ss_pred HHHHHHhCCCceEEEehhhcc--CCcCccceEEEEEECCCCCcccCCcchhhHHHHcCCCCCC---ceEEeeHHHHHhh-
Confidence 11 123667777664 89999987 1 1111 121 1222289999873
Q ss_pred HHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCC
Q 006680 491 LEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKK 546 (635)
Q Consensus 491 ~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk 546 (635)
. . .+ ...+.+++|++.+++....|.+++..||++|+.|+++...++++++
T Consensus 320 -~--~-~~--~~~~~~~~v~~~~~~~~~~a~~~~~~Lr~~G~~~~~~~~~~~~~~~ 369 (391)
T PRK12292 320 -Q--L-EL--PVEARKDLVIAPDSEALAAALAAAQELRKKGEIVVLALPGRNFEDA 369 (391)
T ss_pred -c--c-cc--ccccCCcEEEEeCcccHHHHHHHHHHHHHcCCEEEEecCCCChHHH
Confidence 1 1 11 1245678899998888899999999999999999999988888888
No 44
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.55 E-value=2.2e-14 Score=123.46 Aligned_cols=90 Identities=42% Similarity=0.722 Sum_probs=86.1
Q ss_pred CceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHH
Q 006680 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVRE 583 (635)
Q Consensus 504 p~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 583 (635)
|.+++|+|.+++..++|.++++.||+.|++|++|+++++++++ +++
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~----------------------------------~~~ 46 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLRNEKLGKK----------------------------------IRE 46 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH----------------------------------HHH
Confidence 7899999999999999999999999999999999999999999 999
Q ss_pred HhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHH
Q 006680 584 AQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 627 (635)
Q Consensus 584 A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~ 627 (635)
|++.|+|++++||++|..++++++++++++++..++++++++.+
T Consensus 47 a~~~g~~~~iiig~~e~~~~~v~lk~~~~~~~~~~~~~~~~~~~ 90 (91)
T cd00860 47 AQLQKIPYILVVGDKEVETGTVSVRTRDGGDLGSMSLDEFIEKL 90 (91)
T ss_pred HHHcCCCEEEEECcchhhCCEEEEEECCCCccceEcHHHHHHHh
Confidence 99999999999999999999999999999999999999987765
No 45
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=99.54 E-value=1.2e-13 Score=163.12 Aligned_cols=132 Identities=20% Similarity=0.295 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEe-ccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALE 229 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~L~i-g~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle 229 (635)
.-+||++|||.+|++++||.++.. |..++ .+++|+||.. ...+|++++.+||++||++| ++||+..++++++|.+
T Consensus 557 m~~HTAtHLL~aAL~~vlg~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vNelI~~n~pV~~~~~~~eeA~~ 634 (851)
T TIGR00344 557 MRNHSATHLLHAALQKVLGNHVWQAGSLVS-VKKLRFDFSH-YRALTREELEKIEDLVNEQILANIPIKVIFMDLDEAKA 634 (851)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEeccCccc-CCcEEEEecC-CCCCCHHHHHHHHHHHHHHHHhCCceEEEEeCHHHHHh
Confidence 569999999999999999987754 43332 2789999986 45899999999999999999 9999999999999999
Q ss_pred HhhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 230 MFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 230 ~F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
++.. .++... -++.|+|+++|++ +++|.||||+|||+|+.|+|++.++ -.....||+
T Consensus 635 ~~~~-----~~~~e~-y~~~VRVV~Ig~~d~e~CgGTHV~nTgeIg~~kI~~~~~-------~~~G~~RIe 692 (851)
T TIGR00344 635 KGAF-----ALFGEK-YGEKVRVVSVGDVSVELCGGTHVRNTGEIGLFKIVKESG-------IAAGVRRIE 692 (851)
T ss_pred cchh-----hhcCCC-CCCeEEEEEECCeeccCCCCCccCChhhCeEEEEEEEeE-------ecCCeEEEE
Confidence 7643 222221 1457999999995 7899999999999999999998764 134456774
No 46
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=99.51 E-value=5.9e-14 Score=121.29 Aligned_cols=90 Identities=32% Similarity=0.603 Sum_probs=85.3
Q ss_pred CceEEEEecCC---CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhh
Q 006680 504 PRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVS 580 (635)
Q Consensus 504 p~qv~v~p~~~---~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (635)
|.+++|+|.++ ...++|.++++.||++|++|++|.++.+++++
T Consensus 1 p~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~---------------------------------- 46 (94)
T cd00738 1 PIDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDRERKIGKK---------------------------------- 46 (94)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCCCcCHhHH----------------------------------
Confidence 67999999988 78899999999999999999999988999999
Q ss_pred HHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHH
Q 006680 581 VREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 627 (635)
Q Consensus 581 ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~ 627 (635)
+++|++.|+||++++|++|+++++|++|+++++++..++++++.+.+
T Consensus 47 ~~~a~~~g~~~~iiig~~e~~~~~v~i~~~~~~~~~~~~~~~~~~~i 93 (94)
T cd00738 47 FREADLRGVPFAVVVGEDELENGKVTVKSRDTGESETLHVDELPEFL 93 (94)
T ss_pred HHHHHhCCCCEEEEECCChhhCCEEEEEECCCCceeEEEHHHHHhhc
Confidence 99999999999999999999999999999999999999999987654
No 47
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=99.50 E-value=1.7e-13 Score=162.38 Aligned_cols=132 Identities=20% Similarity=0.344 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCceE-eccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCKLC-IGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALE 229 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~L~-ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle 229 (635)
.-+||++|||.+|++++||.++. .|..++ .+++++||.. ..++|++++.+||++||++| ++||...++++++|.+
T Consensus 550 m~~HTa~HLL~~al~~~lg~~v~q~Gs~~~-~~~~r~Df~~-~~~lt~eel~~IE~~vN~lI~~n~pV~~~~~~~~eA~~ 627 (865)
T PRK00252 550 ARNHSATHLLHAALREVLGEHVTQAGSLVA-PDRLRFDFSH-FEALTPEELRKIEDLVNEKIRENLPVETEEMSIEEAKK 627 (865)
T ss_pred HHHHHHHHHHHHHHHHHhhhheEeccCccc-CCeEEEEeec-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHh
Confidence 56999999999999999987765 343332 2799999986 46899999999999999999 9999999999999997
Q ss_pred HhhcCcchhhhcccCCCCCeEEEEEeCC-eEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 230 MFSDNNFKVEIINDLPADKTITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 230 ~F~~~~~K~~LL~~~~~~~~v~vYr~g~-~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
+.. ..++... .++.|+|+.+|+ .+++|.||||+|||+|+.|+|++.++ ......||+
T Consensus 628 ~~~-----~~~~~~~-y~~~VRVV~Ig~~d~~~CgGTHV~nTgeIg~~kI~~~~~-------~~~g~~RI~ 685 (865)
T PRK00252 628 MGA-----MALFGEK-YGDEVRVVSIGDFSIELCGGTHVSNTGDIGLFKIVSESG-------VAAGVRRIE 685 (865)
T ss_pred CCc-----hhhcccc-CCCeEEEEEECCceeeCCCCCccCCcccCeEEEEEEEee-------ecCCeEEEE
Confidence 431 1223322 246899999999 57899999999999999999998764 233455774
No 48
>PLN02900 alanyl-tRNA synthetase
Probab=99.48 E-value=7.8e-13 Score=156.94 Aligned_cols=162 Identities=17% Similarity=0.307 Sum_probs=117.2
Q ss_pred EcCEEeec----cccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEe-ccccccCCeeEEEEEcCCCC
Q 006680 123 VNGVLWDM----TRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLG 196 (635)
Q Consensus 123 VNg~l~DL----~~pl~~d~~lef-l~f~s~eG~~vy~hS~ahlL~~Av~~lfg~~L~i-g~sl~~~~Gfy~d~~~~~~~ 196 (635)
.+|.++-. ..++.....|+. ||++-. -.-.-+||++|||.+|++++||.++.. |..++ .+++++||.. ..+
T Consensus 561 ~~g~i~H~~~~~~g~l~~G~~V~~~VD~~rR-~~~m~~HTAtHLL~aALr~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~ 637 (936)
T PLN02900 561 AGGFVLHIGTVTEGSVSVGDAVTCKVDYDRR-RRIAPNHTATHLLNSALKEVLGDHVDQKGSLVA-FEKLRFDFSH-GKP 637 (936)
T ss_pred ECCEEEEEEEeccCCCCCCCEEEEEECHHHH-HHHHHHHHHHHHHHHHHHHHcCCcEEecccccc-CCeEEEEeeC-CCC
Confidence 36665543 224443434443 443322 123569999999999999999887653 44332 2789999987 568
Q ss_pred CCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCe--EeecCCCCCCCCcc
Q 006680 197 LNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL--VDLCRGPHIPNTSF 272 (635)
Q Consensus 197 it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~--iDlc~GPhVpsTG~ 272 (635)
+|++++.+||++||++| +.||+..+++++||.++... . .++... -.+.|+|+.+|++ +++|.||||+|||+
T Consensus 638 lt~eel~~IE~~vNe~I~~n~pV~~~~~~~eEA~~~~g~---~-~~f~e~-y~~~VRVV~Ig~~~d~elCGGTHV~nTge 712 (936)
T PLN02900 638 MTPEELREVESLVNEWIGDALPVEAKEMPLADAKRINGL---R-AVFGEK-YPDPVRVVSVGGVYSMELCGGTHVSNTAE 712 (936)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEEEcCHHHHhhccCh---H-hhcCCC-CCCcEEEEEECCccceeCCCCCcCCcccc
Confidence 99999999999999999 99999999999999984321 0 111111 1247999999995 67899999999999
Q ss_pred ccceEEeecccceeccCCCCCCcceee
Q 006680 273 VKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 273 Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
|+.|+|++.++ -.....||+
T Consensus 713 IG~fkIls~~~-------~~~G~rRIe 732 (936)
T PLN02900 713 AEAFKLLSEEG-------IAKGIRRIT 732 (936)
T ss_pred CceEEEEEEee-------ecCCeEEEE
Confidence 99999998764 133455775
No 49
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=99.48 E-value=3.4e-13 Score=159.73 Aligned_cols=133 Identities=22% Similarity=0.320 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEe-ccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALE 229 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~L~i-g~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle 229 (635)
.-+||++|||.+|++++||.++.. |..++ .+.+++||.. ...+|++++.+||+.||++| ++|++..++++++|.+
T Consensus 590 mr~HTAtHLL~~al~~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~ 667 (900)
T PRK13902 590 MRHHTATHIILAAARKVLGDHVWQAGAQKT-VDKARLDITH-YKRITREEVKEIERLANEIVMENRPVKVEWMDRNEAEQ 667 (900)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeecCcccc-CCCEEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEecCHHHHHh
Confidence 337999999999999999988754 44433 2788999986 46899999999999999999 9999999999999988
Q ss_pred HhhcCcchhhhccc-CCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 230 MFSDNNFKVEIIND-LPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 230 ~F~~~~~K~~LL~~-~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
++. ..+... .+.++.|+|+++|++ +.+|.||||+|||+|+.|+|++.++ -.+...||+
T Consensus 668 ~~~-----~~l~~~g~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~e~-------i~~Gv~RIe 727 (900)
T PRK13902 668 KYG-----FRLYQGGVPPGKTIRVVEIGDWDVEACGGTHVSNTGEIGPIKILKTER-------IQDGVERLE 727 (900)
T ss_pred ccc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCcCcHhhCeeEEEEEEEE-------ecCCeEEEE
Confidence 653 233321 334678999999997 7899999999999999999998764 134455774
No 50
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=99.45 E-value=5.9e-13 Score=157.76 Aligned_cols=124 Identities=19% Similarity=0.284 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEe-ccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCKLCI-GPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALE 229 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~L~i-g~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle 229 (635)
.-+||++|||.+|++++||.++.. |..++ .+.+++||.. ...+|++++.+||+.||++| ++|++..++++++|.+
T Consensus 594 m~~HTAtHLL~~alr~vlG~~v~q~Gs~v~-~d~~r~Df~~-~~~lt~eel~~IE~~vN~~I~~n~pV~~~~~~~~eA~~ 671 (902)
T TIGR03683 594 MRHHTATHVLLAAARRVLGRHVWQAGAQKD-TDKARLDITH-YKRISEEEIKEIERLANRIVMENRPVSVKWMDRNEAEQ 671 (902)
T ss_pred HHHHHHHHHHHHHHHHHhCCceeecCcccc-CCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEeCHHHHHh
Confidence 459999999999999999988754 54443 2678999986 46899999999999999999 9999999999999988
Q ss_pred HhhcCcchhhhccc-CCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeeccc
Q 006680 230 MFSDNNFKVEIIND-LPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (635)
Q Consensus 230 ~F~~~~~K~~LL~~-~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~ 283 (635)
++. ..+... .+.++.|+|+++|++ +.+|.||||+|||+|+.|+|++.++
T Consensus 672 ~~~-----~~l~~~~~~~~~~VRVV~Ig~~d~e~CgGTHV~nTgeIG~~kI~~~~~ 722 (902)
T TIGR03683 672 KYG-----FRLYQGGVPPGREIRVVEIEDWDVQACGGTHCRNTGEIGPIKILKTER 722 (902)
T ss_pred cCc-----hhhhccCCCCCCeEEEEEECCeeeeCCCCCCccchhcCceEEEEEEEE
Confidence 654 223321 234578999999997 7899999999999999999998764
No 51
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=5.4e-13 Score=154.93 Aligned_cols=124 Identities=19% Similarity=0.299 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~ 230 (635)
.-.||++|||.+|++++.|.|+..--|+-..+-..+||.+ ...+|+|++++||..+|++| +.|+...+|++++|.++
T Consensus 564 ~~nHTATHLLh~ALr~VLG~hV~QaGSlv~~~~lRfDfsH-~~~it~Eel~~IE~~vNe~I~~n~~V~~~~m~~~eAk~~ 642 (879)
T COG0013 564 MRNHTATHLLHAALRKVLGDHVWQAGSLVDPEKLRFDFSH-YKALTAEELKEIERLVNEIIRENLPVKTEEMDLDEAKAK 642 (879)
T ss_pred HhhChHHHHHHHHHHHHhCccceecCcccCCCeeEEeecC-CCCCCHHHHHHHHHHHHHHHHcCCceeEEEccHHHHHHh
Confidence 3489999999999999999999886665434677899987 67899999999999999999 99999999999999986
Q ss_pred hhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeeccc
Q 006680 231 FSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (635)
Q Consensus 231 F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~ 283 (635)
. . ..|.... .++.|+|+.+|+| +.+|.|+||+|||.|+.|+|++.++
T Consensus 643 -G---a-~alfGek-Y~~~VRVV~ig~~SvElCGGTHv~~Tg~IG~fkI~~e~~ 690 (879)
T COG0013 643 -G---A-MALFGEK-YGDEVRVVEIGDFSVELCGGTHVSNTGDIGLFKIISEEG 690 (879)
T ss_pred -C---h-HhhcCCc-CCCeEEEEEECCceeeccCCcccCCccceeeEEEEEecc
Confidence 2 1 2334444 3479999999998 8999999999999999999999875
No 52
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain. SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.
Probab=99.45 E-value=7e-14 Score=147.36 Aligned_cols=160 Identities=25% Similarity=0.437 Sum_probs=108.3
Q ss_pred cccccceEEeeeccccccccC---CCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEE-EccC
Q 006680 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK-LSTR 387 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~---g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~-ls~r 387 (635)
+|+++|++++++|.+||+|.+ +.+.||+|+|||+|.|+|+||+++++++|+..+++++.++|+.||+++.+. ++++
T Consensus 126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~~~ 205 (297)
T cd00770 126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNICTG 205 (297)
T ss_pred CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEccCc
Confidence 889999999999999999988 458999999999999999999999999999999999999999999996544 4443
Q ss_pred CCCcCCChhhHHHHHHHHHHHHHHcCCC-cEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCC
Q 006680 388 PEKYLGDLATWEKAEAALTEALNEFGKP-WQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDE 466 (635)
Q Consensus 388 ~~~~lg~~~~~~~a~~~l~~~l~~~g~~-~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e 466 (635)
. +|..+.. ++... | .++.+.+ +....|.. ..||+ ..|+++.|.+++.
T Consensus 206 d---l~~~~~~------------~~d~e~~--~p~~~~~-------------~e~~s~s~-~~d~~-s~r~~i~y~~~~~ 253 (297)
T cd00770 206 D---LGFAAAK------------KYDIEAW--MPGQGKY-------------REISSCSN-CTDFQ-ARRLNIRYRDKKD 253 (297)
T ss_pred c---ccCchhh------------heeehee--cCCCCCe-------------EEEEEccC-ccChh-hhhcCcEEecCCC
Confidence 1 2222110 00000 1 1211111 00011211 24666 3679999988731
Q ss_pred CccccccccccceeeeHHHHHHHHHHHhC---C-CCC-CCCCC
Q 006680 467 AKTERPVMIHRAILGSVERMFAILLEHYK---G-KWP-FWLSP 504 (635)
Q Consensus 467 ~~~~~p~~i~~ai~GgveR~~~~l~e~~~---g-~~p-~~lsp 504 (635)
++. .++..+.+..+|++|++++|+|++. | .|| ..|.|
T Consensus 254 ~~~-~~~~~~~~~~~~~~R~l~alle~~~~~~g~v~~P~~l~p 295 (297)
T cd00770 254 GKK-QYVHTLNGTALATPRTIVAILENYQTEDGSVVIPEVLRP 295 (297)
T ss_pred CCe-eeeeEecccchHHHHHHHHHHHhCcCCCCcEeCchhhcc
Confidence 333 3332224555689999999999974 5 355 33444
No 53
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=99.41 E-value=1.5e-12 Score=142.23 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=128.5
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC----
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP---- 388 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~---- 388 (635)
..|+|++++|++||++.++. +|.|||+|.|+++||.++. +|+| ++.++.++++.+|++ +.+.||++.
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~----gr~rEf~Q~GvEiiG~~~~~aDaE---vi~l~~e~l~~lgi~~~~l~ig~~~i~~~ 171 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGL----FGSRTPLQLGAELYGHAGIEADLE---IIRLMLGLLRNAGVPALHLDLGHVGIFRR 171 (392)
T ss_pred CCceEEEEeeeEEEcCCCcC----CCcCccceeceEEeCCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCCHHHHHH
Confidence 56899999999999999887 7999999999999999998 9999 999999999999997 999999985
Q ss_pred -CCcCCChhhHHHHHHHHHHHHHH------------cCCCcE----E-----cCCCCc--------c--cccchhHH---
Q 006680 389 -EKYLGDLATWEKAEAALTEALNE------------FGKPWQ----I-----NEGDGA--------F--YGPKIDIS--- 433 (635)
Q Consensus 389 -~~~lg~~~~~~~a~~~l~~~l~~------------~g~~~~----~-----~~g~~a--------f--~gpkid~~--- 433 (635)
.+.+|.++.+.. .+.+++++ .+.+-. + ..|+.. + .+|++...
T Consensus 172 il~~l~l~~~~~~---~l~~~l~kk~~~~l~~~~~~~~~~~~~~~~l~~L~~~~g~~~~l~~~~~~~~~~~~~~~~~l~~ 248 (392)
T PRK12421 172 LAELAGLSPEEEE---ELFDLLQRKALPELAEVCQNLGVGSDLRRMFYALARLNGGLEALDRALSVLALQDAAIRQALDE 248 (392)
T ss_pred HHHHcCCCHHHHH---HHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHhhcccCCHHHHHHHHH
Confidence 134565544422 22233332 221100 0 001100 0 11221111
Q ss_pred ---HHHHhhhhhhhceeeeecCCCeeeeeEEEecC--C-------------Cccc---------cccccccceeeeHHHH
Q 006680 434 ---VSDALKRKFQCATLQLDFQLPDRFNLGYSAED--E-------------AKTE---------RPVMIHRAILGSVERM 486 (635)
Q Consensus 434 ---~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~--e-------------~~~~---------~p~~i~~ai~GgveR~ 486 (635)
+.+.++...-...+.+|+++.. +++||||. | |.++ .|. .+.+-|+||+
T Consensus 249 L~~l~~~l~~~~~~~~~~~Dlslvr--gldYYTG~vFe~~~~~~~~~i~~GGRYD~L~~~fg~~~pA---vGfai~lerL 323 (392)
T PRK12421 249 LKTLAAHLKNRWPELPVSIDLAELR--GYHYHTGLVFAAYIPGRGQALARGGRYDGIGEAFGRARPA---TGFSMDLKEL 323 (392)
T ss_pred HHHHHHHHHhhCCCceEEEeecccc--CCCCcCCCEEEEEECCCCCcccCCCCccchhHhhCCCCCC---ceEEeeHHHH
Confidence 1111211111123668877764 89999988 1 1111 122 1233389999
Q ss_pred HHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCC
Q 006680 487 FAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTD 540 (635)
Q Consensus 487 ~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~ 540 (635)
+.++.+ .+ . .+++|++.++. ..+.+++++||+.|+.|+++..+
T Consensus 324 ~~~l~~-----~~---~-~~~~~~~~~~~--~~~~~~a~~LR~~G~~~~~~~~~ 366 (392)
T PRK12421 324 LALQFL-----EE---E-AGAILAPWGDD--PDLLAAIAELRQQGERVVQLLPG 366 (392)
T ss_pred Hhhccc-----cc---C-CceEEeecCCc--HHHHHHHHHHHhCCCEEEEeCCC
Confidence 986632 11 1 26788887654 45889999999999999998754
No 54
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=99.40 E-value=5.8e-13 Score=146.86 Aligned_cols=156 Identities=26% Similarity=0.404 Sum_probs=111.9
Q ss_pred cccccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEE-EEccC
Q 006680 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTR 387 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l-~ls~r 387 (635)
+|++||+++++++.+||.|..+ ...||+|+|||+|.|+|+||+++++.+|+..+++++.++|+.||++|.+ .++++
T Consensus 245 s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglpyr~v~~~s~ 324 (425)
T PRK05431 245 DEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELPYRVVLLCTG 324 (425)
T ss_pred CHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence 7899999999999999999976 4799999999999999999999999999999999999999999999876 56554
Q ss_pred C----CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEe
Q 006680 388 P----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSA 463 (635)
Q Consensus 388 ~----~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~ 463 (635)
. ...-.|.+.|. ++.+.+- .+.....| .||| +.|+++.|.+
T Consensus 325 dlg~~a~~~~DiE~w~--------------------p~~~~~~----------ev~s~snc----~d~q-srr~~i~~~~ 369 (425)
T PRK05431 325 DLGFSAAKTYDLEVWL--------------------PSQNTYR----------EISSCSNC----TDFQ-ARRANIRYRD 369 (425)
T ss_pred ccCCchHheecHHHhC--------------------cccCCee----------EEEEecCc----cchh-hhhcCcEEec
Confidence 2 11223333332 2222210 00001122 3555 4678999987
Q ss_pred cCCCccccccccc--cceeeeHHHHHHHHHHHhC---C--CCCCCCCCc
Q 006680 464 EDEAKTERPVMIH--RAILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (635)
Q Consensus 464 ~~e~~~~~p~~i~--~ai~GgveR~~~~l~e~~~---g--~~p~~lsp~ 505 (635)
...++... +| .+.+.++.|++++++|++. | .||..|.|+
T Consensus 370 ~~~~~~~~---~htln~t~~a~~R~l~ailE~~q~~~g~i~iP~~l~py 415 (425)
T PRK05431 370 EGDGKPEL---VHTLNGSGLAVGRTLVAILENYQQADGSVTIPEVLRPY 415 (425)
T ss_pred CCCCceeE---EEEeCCchhhHHHHHHHHHHHCCCCCCcEECChhhhcc
Confidence 62133322 44 1223379999999999885 5 488878775
No 55
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=99.37 E-value=1.2e-12 Score=144.19 Aligned_cols=158 Identities=24% Similarity=0.463 Sum_probs=109.8
Q ss_pred cccccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEE-EEccC
Q 006680 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL-KLSTR 387 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l-~ls~r 387 (635)
+|++||++++++|.+||.|..+ ...||+|+|||+|.|+++||+++++.+|+..+++++.++|+.||++|.+ .+.++
T Consensus 247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~t~ 326 (418)
T TIGR00414 247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLCSG 326 (418)
T ss_pred ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecCcc
Confidence 7899999999999999999964 3689999999999999999999999999999999999999999999764 45553
Q ss_pred CCCcCCChh--hHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecC
Q 006680 388 PEKYLGDLA--TWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (635)
Q Consensus 388 ~~~~lg~~~--~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~ 465 (635)
. +|..+ +++ ++. | .++.+.+ +....|.. ..||| +.|+++.|.+++
T Consensus 327 d---lg~~a~~~yd-----iE~--------w--~p~~~~~-------------~ev~s~sn-~~d~q-srr~~i~y~~~~ 373 (418)
T TIGR00414 327 D---LGFSAAKKYD-----LEV--------W--MPGQNTY-------------REISSCSN-CTDFQ-ARRLNIRYKDKN 373 (418)
T ss_pred c---cccCHhhhhh-----HHH--------h--CCCcCce-------------EEEEEEcC-cchHh-HHhCCcEEECCC
Confidence 2 22221 110 000 1 0211111 00011221 14566 477999999764
Q ss_pred CCcccccccccc--ceeeeHHHHHHHHHHHhC---C--CCCCCCCCc
Q 006680 466 EAKTERPVMIHR--AILGSVERMFAILLEHYK---G--KWPFWLSPR 505 (635)
Q Consensus 466 e~~~~~p~~i~~--ai~GgveR~~~~l~e~~~---g--~~p~~lsp~ 505 (635)
.++. ..+|. +...|++|++++|+|++. | .||..|.|+
T Consensus 374 ~~~~---~~vh~ln~~~~ai~R~i~Aile~~~~~~G~i~iP~~l~py 417 (418)
T TIGR00414 374 KGKN---KYVHTLNGTALAIGRTIVAILENYQTEDGSVEIPEVLRKY 417 (418)
T ss_pred CCce---EEEEeecCcchHHHHHHHHHHHHccCCCCCEeCChhcccc
Confidence 2222 22343 555599999999999874 5 388877764
No 56
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.
Probab=99.35 E-value=1.1e-12 Score=136.09 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=77.4
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEE-ecCchhHHHHHHHHHHHHHHHHHhC-CeEEEEEccCCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEVRGVLEFIDYAYRIFG-FTYELKLSTRPE 389 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if-~~~~~~~~E~~~~l~~~~~~~~~~G-~~~~l~ls~r~~ 389 (635)
+|++||++++++|.+||+|.++. .||+|+|||+|.|+|+| |.++++++|+..+++++.++|+.|| ++|.+..+++++
T Consensus 114 s~~~LPlrl~~~~~~fR~E~r~~-~Gl~R~reF~~~e~~~~~~~~e~a~~e~~~~~~~~~~i~~~l~~lp~~~~~~~~~d 192 (264)
T cd00772 114 SWKDLPQHLNQIGNKFRDEIRPR-FGFLRAREFIMKDGHSAHADAEEADEEFLNMLSAYAEIARDLAAIDFIEGEADEGA 192 (264)
T ss_pred hhhccCeeEEEEeCeEeCcCCCC-CCcceeeEEEEeeeEEecCCHHHHHHHHHHHHHHHHHHHHhcCCccEEEEEcCCCc
Confidence 78999999999999999997664 89999999999999999 5666799999999999999999999 899999999998
Q ss_pred CcCCChhh
Q 006680 390 KYLGDLAT 397 (635)
Q Consensus 390 ~~lg~~~~ 397 (635)
+++|...+
T Consensus 193 ~~~g~~~~ 200 (264)
T cd00772 193 KFAGASKS 200 (264)
T ss_pred cccCCcCC
Confidence 88887644
No 57
>PLN02320 seryl-tRNA synthetase
Probab=99.34 E-value=1.9e-12 Score=143.94 Aligned_cols=151 Identities=26% Similarity=0.460 Sum_probs=109.0
Q ss_pred cccccceEEeeeccccccccC--C-CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeE-EEEEccC
Q 006680 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTY-ELKLSTR 387 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~--g-~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~-~l~ls~r 387 (635)
+|++||+|+..+|.+||.|.. | .++||+|+++|+|+|+|+||+++|+++|+..+++++.++|+.|||+| .+.+++.
T Consensus 308 s~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~if~~peqs~~e~e~ll~~~e~i~~~LgLpyrvv~l~tg 387 (502)
T PLN02320 308 LESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFVICRPEESESFHEELIQIEEDLFTSLGLHFKTLDMATA 387 (502)
T ss_pred CHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence 688999999999999999999 7 79999999999999999999999999999999999999999999995 5667664
Q ss_pred CCCcCCChhhHHHHHHHHHHHHHHcCCCcE-EcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecC-
Q 006680 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED- 465 (635)
Q Consensus 388 ~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~-~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~- 465 (635)
. ||..+.. ++ +.+ .-||.+.|. ++ ..|. -..||| ++|.++.|...+
T Consensus 388 D---Lg~~a~k------------ky--DiEvW~P~~~~y~----Ev---------sS~S-Nc~DfQ-aRRl~iryr~~~~ 435 (502)
T PLN02320 388 D---LGAPAYR------------KF--DIEAWMPGLGRYG----EI---------SSAS-NCTDYQ-SRRLGIRYRPSEP 435 (502)
T ss_pred c---cchhhhh------------eE--EEEEEecCCCcEE----EE---------eeec-chhhHh-hhcccceeccccc
Confidence 3 3433210 01 111 124444331 11 1121 225777 678899998531
Q ss_pred ------CCc--cccccccccceee---eHHHHHHHHHHHhC
Q 006680 466 ------EAK--TERPVMIHRAILG---SVERMFAILLEHYK 495 (635)
Q Consensus 466 ------e~~--~~~p~~i~~ai~G---gveR~~~~l~e~~~ 495 (635)
.++ ...+..+| ++-| -+.|++++|+|+|.
T Consensus 436 ~~~~~~~~k~~~~~~~~vH-TLNgTalAv~R~l~AILENyQ 475 (502)
T PLN02320 436 PQTNPKKGKGSLGPTKFVH-TLNATACAVPRMIVCLLENYQ 475 (502)
T ss_pred cccccccccccCCCcceeE-ecccchhHHHHHHHHHHHhCc
Confidence 121 01244566 5666 38999999999985
No 58
>PLN02961 alanine-tRNA ligase
Probab=99.33 E-value=2.4e-11 Score=123.27 Aligned_cols=150 Identities=16% Similarity=0.235 Sum_probs=104.6
Q ss_pred EEcCEEeecc----------ccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHH-hCCce-EeccccccCCeeEE
Q 006680 122 MVNGVLWDMT----------RPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQ-YGCKL-CIGPCTTRGEGFYY 188 (635)
Q Consensus 122 kVNg~l~DL~----------~pl~~d~~lef-l~f~s~eG~~vy~hS~ahlL~~Av~~l-fg~~L-~ig~sl~~~~Gfy~ 188 (635)
+.+|.+|-.. .+|.....|+. ||++-. -.-.-.||+.|||.+|++++ +|... ..|.... ++-|.
T Consensus 42 ~~~g~i~H~~~~~~~~~~~~~~l~~G~~V~~~ID~~rR-~~~m~~HTa~HLL~~al~~~~~~~~~~~~g~~~~--~~~~v 118 (223)
T PLN02961 42 RKDGVVYHYGVFEGSNPESASPFEAGDEVTVTVDESRR-KLHSRLHSAGHLLDVCMARVGLGPLEPGKGYHFP--DGPFV 118 (223)
T ss_pred EECCEEEEEEEecCcccccCCCCCCCCEEEEEECHHHH-hhhhccCcHHHHHHHHHHHcCCCccccccccccC--Cccce
Confidence 3577766542 24433334443 443322 12234899999999999997 56432 3455555 66777
Q ss_pred EEEcCCCCCCHhH----HHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEee-
Q 006680 189 DAFYGDLGLNPDH----FKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDL- 261 (635)
Q Consensus 189 d~~~~~~~it~ed----l~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDl- 261 (635)
|+. ..++.++ +.+||+++|++| ++|++..++++++|.++... +. -...+..+.++|+++|++...
T Consensus 119 ~~~---~~i~~~~~~~~~~~iE~~~N~~I~~~~~V~~~~~~~~ea~~~~~~---~~--~~~~~~~~~vRiV~I~~~d~~~ 190 (223)
T PLN02961 119 EYK---GKIPQGELDSKQDELEAEANELIAEGGKVSAAVLPYDEAAELCGG---SL--PDYIAKDSTPRIVKIGDSPGCP 190 (223)
T ss_pred eec---ccCCHHHHHhHHHHHHHHHHHHHHcCCceeEEEeCHHHHHHhcCC---cC--CCcCCCCCceEEEEECCCccCc
Confidence 764 3466544 579999999999 99999999999999886431 11 111223468999999997554
Q ss_pred cCCCCCCCCccccceEEeecc
Q 006680 262 CRGPHIPNTSFVKGFGCLKAS 282 (635)
Q Consensus 262 c~GPhVpsTG~Ik~F~L~k~s 282 (635)
|.|+||.|||+|+.|+|++.+
T Consensus 191 CgGTHv~nT~eig~i~I~~~~ 211 (223)
T PLN02961 191 CGGTHVADVSEITSVKVTQIR 211 (223)
T ss_pred cCCcccCchhccccEEEEEEE
Confidence 999999999999999999864
No 59
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain. ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.
Probab=99.27 E-value=1.9e-12 Score=133.63 Aligned_cols=143 Identities=18% Similarity=0.304 Sum_probs=99.5
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCc-hhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-QIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~-~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~ 390 (635)
+|+++|++++++|++||+|.++. .||+|+|||+|.|+|+||.++ ++++|+..++..+.++|+.||++|.+...++ +
T Consensus 108 s~~~LPlr~~~~~~~FR~E~~~~-~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~i~~~~~~il~~Lgl~~~~~~~~~--~ 184 (255)
T cd00779 108 SYKQLPLNLYQIQTKFRDEIRPR-FGLMRGREFLMKDAYSFDIDEESLEETYEKMYQAYSRIFKRLGLPFVKVEADS--G 184 (255)
T ss_pred cHhhCCHHHHhCcceecCCCCCC-CceeeeeeEeHhhheeccCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecC--C
Confidence 67899999999999999996553 899999999999999999976 5999988899999999999999987666433 4
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCcEEc---CCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCC
Q 006680 391 YLGDLATWEKAEAALTEALNEFGKPWQIN---EGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 391 ~lg~~~~~~~a~~~l~~~l~~~g~~~~~~---~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~ 467 (635)
.+|...+. .|.+. ++.+ + ++ .+.-|.|+ |++ +++||+.|.+.+ +
T Consensus 185 ~~gg~~s~----------------~~~~e~~~~~~~--~---~e------~~s~~~lg----~~~-sr~~~i~~~~~~-~ 231 (255)
T cd00779 185 AIGGSLSH----------------EFHVLSPLKITK--G---IE------VGHIFQLG----TKY-SKALGATFLDEN-G 231 (255)
T ss_pred CCCCcccE----------------EEEEEEecCCCC--e---EE------EEeeeecc----hhH-HHhcCcEEECCC-C
Confidence 45543220 01111 1111 0 00 11122222 222 567899998765 4
Q ss_pred ccccccccccceee-eHHHHHHHHHHH
Q 006680 468 KTERPVMIHRAILG-SVERMFAILLEH 493 (635)
Q Consensus 468 ~~~~p~~i~~ai~G-gveR~~~~l~e~ 493 (635)
+.+. +|....| |+.|++++++|+
T Consensus 232 ~~~~---~~~~~~gi~~~R~l~ai~e~ 255 (255)
T cd00779 232 KPKP---LEMGCYGIGVSRLLAAIIEQ 255 (255)
T ss_pred CEEe---eEecCccchHHHHHHHHHcC
Confidence 4333 3445555 899999999984
No 60
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes. seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....
Probab=99.25 E-value=5.9e-12 Score=122.06 Aligned_cols=76 Identities=37% Similarity=0.662 Sum_probs=71.0
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCC-eEEEEEccCCC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPE 389 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~-~~~l~ls~r~~ 389 (635)
|+++|++++++|.+||+|. +...|+.|+|||+|.|+|+||.++++..++..+++.+.++|+.||+ +|++.++++++
T Consensus 79 ~~~LP~~~~~~g~~fR~E~-~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~~ 155 (173)
T PF00587_consen 79 YRDLPLKLYQIGTCFRNEA-RPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSGE 155 (173)
T ss_dssp GGGSSEEEEEEEEEEBSSS-SSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETCT
T ss_pred cccCCeEEeeccccccccc-ccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCCc
Confidence 8899999999999999998 6669999999999999999999988999999999999999999999 89999999865
No 61
>PRK00960 seryl-tRNA synthetase; Provisional
Probab=99.23 E-value=5.6e-12 Score=140.93 Aligned_cols=161 Identities=17% Similarity=0.201 Sum_probs=104.9
Q ss_pred cccccceEEee-eccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCC
Q 006680 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (635)
Q Consensus 312 syrelPlrv~~-vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~ 390 (635)
+|++||+++++ .|.+||+| +|.+.||.|++||+|.|+|+||+++|+.+|+..++.++..+++.||+++...+.+-|-=
T Consensus 330 s~rdLPLrl~e~sG~cFR~E-sGs~~GL~RV~eF~kvE~h~f~tpEqs~ee~e~ll~~~e~i~~~LgLp~~r~v~~DPFf 408 (517)
T PRK00960 330 DVDELPIKFFDRSGWTYRWE-GGGAHGLERVNEFHRIEIVWLGTPEQVEEIRDELLKYAHILAEKLDLEYWREVGDDPFY 408 (517)
T ss_pred ChhhCCHHHhhccCCceeCC-CCCCCCCcccceeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCceEEecccccc
Confidence 88999999998 77999999 67899999999999999999999999999999999999999999999944444433310
Q ss_pred cCCChhhH-HHHHHHHHHHHHHcCCCcEE-cC---CCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecC
Q 006680 391 YLGDLATW-EKAEAALTEALNEFGKPWQI-NE---GDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (635)
Q Consensus 391 ~lg~~~~~-~~a~~~l~~~l~~~g~~~~~-~~---g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~ 465 (635)
.-|..-+| +..- ... .....+. -| ++|.+ +..+..+..-|++ +.+||+.|.++
T Consensus 409 ~~~~k~~~~d~~f----~~~--~tydiE~wmP~~~~~gk~--------------~ev~S~S~hgd~f-arrfnIk~~~g- 466 (517)
T PRK00960 409 LEGRGLEDRGIEF----PDV--PKYEMELWLPYRGDERKW--------------VAVTSANVHGTHF-VEGFNIKDYKG- 466 (517)
T ss_pred cccCccccccccC----ccc--cceeEEEEecCccCCCCE--------------EEEEeeeeccchh-hHhhCcccCCC-
Confidence 00000000 0000 000 0000000 01 22211 1223333445554 56788876322
Q ss_pred CCccccccccccceee-eHHHHHHHHHHHhC---CCCCCCC
Q 006680 466 EAKTERPVMIHRAILG-SVERMFAILLEHYK---GKWPFWL 502 (635)
Q Consensus 466 e~~~~~p~~i~~ai~G-gveR~~~~l~e~~~---g~~p~~l 502 (635)
+ + .|.+..| |++|++++|+|+++ |.||..+
T Consensus 467 --~---~--~hTnctG~g~eR~l~AlLe~hG~d~~~wPe~~ 500 (517)
T PRK00960 467 --R---K--LWTGCTGYGLERWVIGFLAQKGFDPENWPEEI 500 (517)
T ss_pred --C---e--EeecceeeHHHHHHHHHHHhcCCCCCcCCHHH
Confidence 1 2 4556666 99999999999986 6788643
No 62
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=99.22 E-value=2.9e-11 Score=102.67 Aligned_cols=89 Identities=25% Similarity=0.505 Sum_probs=83.0
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHh
Q 006680 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQ 585 (635)
Q Consensus 506 qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~ 585 (635)
+|+|+|.++....+|.+++..||++|+.|+++..+++++++ +++|+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~~~~~~~----------------------------------~~~a~ 48 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGGRKLKKQ----------------------------------FKYAD 48 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHH----------------------------------HHHHH
Confidence 68999999888899999999999999999999887899999 99999
Q ss_pred hcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHH
Q 006680 586 LAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 628 (635)
Q Consensus 586 ~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~ 628 (635)
+.|+|+++++|+++..++++++++++++++..++++++++.++
T Consensus 49 ~~~~~~~i~i~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 91 (91)
T cd00859 49 RSGARFAVILGEDELAAGVVTVKDLETGEQETVALDELVEELK 91 (91)
T ss_pred HcCCCEEEEEcHHHHhCCcEEEEECCCCCcEEEeHHHHHHHhC
Confidence 9999999999999999999999999999999999998877653
No 63
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=99.22 E-value=2e-11 Score=99.06 Aligned_cols=60 Identities=40% Similarity=0.589 Sum_probs=56.8
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
|+|++|||+.++++. |+|++|+|+.|+.++++.+++|+|||++|||++||+.+|.|+++|
T Consensus 1 I~v~lpdG~~~~~~~-g~T~~d~A~~I~~~l~~~~~~A~Vng~~vdl~~~L~~~d~v~iiT 60 (60)
T PF02824_consen 1 IRVYLPDGSIKELPE-GSTVLDVAYSIHSSLAKRAVAAKVNGQLVDLDHPLEDGDVVEIIT 60 (60)
T ss_dssp EEEEETTSCEEEEET-TBBHHHHHHHHSHHHHHCEEEEEETTEEEETTSBB-SSEEEEEEE
T ss_pred CEEECCCCCeeeCCC-CCCHHHHHHHHCHHHHhheeEEEEcCEECCCCCCcCCCCEEEEEC
Confidence 689999999999998 899999999999999999999999999999999999999999986
No 64
>PLN02678 seryl-tRNA synthetase
Probab=99.20 E-value=3e-11 Score=133.52 Aligned_cols=150 Identities=21% Similarity=0.389 Sum_probs=106.3
Q ss_pred cccccceEEeeeccccccccC--C-CCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCeEEEE-Ec
Q 006680 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELK-LS 385 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~--g-~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~~~l~-ls 385 (635)
+|++||++++.++.+||.|.. | .++||+|+|+|+|.|+-.||.+++ ..+++..+++.+.++|..||++|++- +.
T Consensus 250 s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~lpyrvv~~~ 329 (448)
T PLN02678 250 DPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGIPYQVVSIV 329 (448)
T ss_pred CHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCCCeEEEeec
Confidence 688999999999999999998 3 789999999999999999999998 89999999999999999999998874 32
Q ss_pred cCCCCcCCChhhHHHHHHHHHHHHHHcCCCcE-EcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEec
Q 006680 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAE 464 (635)
Q Consensus 386 ~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~-~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~ 464 (635)
+ .-+|..+.. ++ +.+ ..|+.+.|- ....|+ -..||| ++|.++.|.+.
T Consensus 330 s---gdlg~~a~~------------~y--DiE~W~P~~~~y~-------------EvsS~S-nc~D~Q-aRRl~iryr~~ 377 (448)
T PLN02678 330 S---GALNDAAAK------------KY--DLEAWFPASKTYR-------------ELVSCS-NCTDYQ-SRRLEIRYGQK 377 (448)
T ss_pred c---cccCCchhh------------ce--eeEeeccccCCce-------------EEeeec-ccccHh-hhcccceeccc
Confidence 2 223332210 00 000 124443331 111222 235777 67899999865
Q ss_pred CCCccccccccccceeee---HHHHHHHHHHHhC
Q 006680 465 DEAKTERPVMIHRAILGS---VERMFAILLEHYK 495 (635)
Q Consensus 465 ~e~~~~~p~~i~~ai~Gg---veR~~~~l~e~~~ 495 (635)
+ +....+..+| ++-|+ +.|++++|+|+|.
T Consensus 378 ~-~~~~~~~~vH-TLNgt~lA~~R~l~AiLEn~Q 409 (448)
T PLN02678 378 K-SNEQTKQYVH-LLNSTLTATERTLCCILENYQ 409 (448)
T ss_pred c-cCCCCceeEE-ecCCchhHHHHHHHHHHHhCc
Confidence 2 1112244466 56664 9999999999984
No 65
>COG2872 Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only]
Probab=99.18 E-value=9.3e-11 Score=119.64 Aligned_cols=188 Identities=18% Similarity=0.161 Sum_probs=129.5
Q ss_pred eeccCCCHHHHHhhhccccccceEEEEEcCE-Ee---eccccccCCCCeE-EeeCCChhHHHHHHHHHHHHHHHHHHHHh
Q 006680 96 GKRWETSPMDIAQGISKSLAANALISMVNGV-LW---DMTRPLEADCDLK-LFTFDSDEGRDTFWHSSAHILGQAIEQQY 170 (635)
Q Consensus 96 ~~~~~tTp~diak~is~~~~~~iV~AkVNg~-l~---DL~~pl~~d~~le-fl~f~s~eG~~vy~hS~ahlL~~Av~~lf 170 (635)
++..|-.|.|--.-+..+....++.+.++|. +| ++...+....+|+ .+||+-.. .-+-.||+.|||++++.+.|
T Consensus 35 yp~~GGQp~D~G~l~~~~~~~~~~~~~~~~~~I~H~~~~~~~~~vG~~V~~~IDW~rRy-~~mr~HTa~Hlls~~~~~~~ 113 (241)
T COG2872 35 YPTGGGQPGDTGTLIWAGGEYVVEDVTKDGEEIVHVLAEHAKLKVGDKVKLKIDWERRY-RHMRMHTALHLLSAVLYKVY 113 (241)
T ss_pred cCCCCCCcCCceEEEeCCceEEEEEEEecceEEEEEecCcccCCCCCEEEEEECcHHHH-HHHhhhHHHHHHHHHhhccc
Confidence 4444567777666655555555666666665 33 2221223334555 36665331 22448999999999999999
Q ss_pred CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCC
Q 006680 171 GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADK 248 (635)
Q Consensus 171 g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~ 248 (635)
+.. +.|..+.. +--+.||+. ..+++++..+++..+++| +.|+.-..+++|||.+++.-...+. ...|...
T Consensus 114 ~~~-~~g~~i~~-d~~~iD~~~---e~~~~~~~~v~~~~ne~v~~~~~v~~~~i~~EE~~~~p~~~~~~~---~~~~~~~ 185 (241)
T COG2872 114 GAL-TTGFEIGE-DYARIDFDG---EDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKN---KVPPDVE 185 (241)
T ss_pred cce-eecceecc-ccccccccc---ccchhhHHHHHHHHHHHHHcCCeeeeeecCHHHHhhCcChhhhcc---cCCcccc
Confidence 954 44433331 333567654 228999999999999999 9999999999999999876433333 2223333
Q ss_pred -eEEEEEeCCeE-eecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 249 -TITVYRCGPLV-DLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 249 -~v~vYr~g~~i-Dlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
.+++++||++. ..|.|+||++||+|+.+++.+.+. +.....|||
T Consensus 186 g~iRiV~I~did~qpCgGtHVk~T~EIG~Iki~k~e~-------k~k~~~Rv~ 231 (241)
T COG2872 186 GKIRIVEIGDIDVQPCGGTHVKNTGEIGEIKILKTEK-------KGKGNRRVY 231 (241)
T ss_pred ceEEEEEECCeeccCCCCcccCCccceEEEEEEEEEE-------ecCceEEEE
Confidence 79999999953 369999999999999999998853 455677776
No 66
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=99.12 E-value=2.6e-10 Score=117.80 Aligned_cols=126 Identities=24% Similarity=0.320 Sum_probs=91.5
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC--CC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP--EK 390 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~--~~ 390 (635)
++|+|++++|.+||++.++. +|.|||+|.|+|+||.+++ +++| ++.++.++++.+|++ +.+.||++. +.
T Consensus 80 ~~p~k~~y~g~vfR~e~~~~----g~~re~~Q~g~Eiig~~~~~~daE---~i~l~~~~l~~lg~~~~~i~l~~~~i~~~ 152 (261)
T cd00773 80 PLPLKLYYIGPVFRYERPQK----GRYREFYQVGVEIIGSDSPLADAE---VIALAVEILEALGLKDFQIKINHRGILDG 152 (261)
T ss_pred CCCeEEEEEcCEEecCCCCC----CCccceEEeceeeeCCCChHHHHH---HHHHHHHHHHHcCCCceEEEECCHHHHHH
Confidence 58999999999999999885 7999999999999999988 8888 999999999999997 999999985 22
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchh-H-HHHHHhhhhhhhceeeeecCCCeeeeeEEEecC
Q 006680 391 YLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKID-I-SVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (635)
Q Consensus 391 ~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid-~-~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~ 465 (635)
.+.....++.+...|.+.|++ .+ ++ . .+.+.++..--...+.+|+.+.. +++||||.
T Consensus 153 l~~~~~~~~~~~~~l~~~l~~-----------~~-----l~~l~~l~~~l~~~~~~~~i~~d~~~~r--~~~YYtG~ 211 (261)
T cd00773 153 IAGLLEDREEYIERLIDKLDK-----------EA-----LAHLEKLLDYLEALGVDIKYSIDLSLVR--GLDYYTGI 211 (261)
T ss_pred HhhccCCCHHHHHHHHHHhhH-----------HH-----HHHHHHHHHHHHHcCCCceEEEcCcccc--CCcccCce
Confidence 333333445555666666655 00 11 0 12222222111134778887764 78999987
No 67
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=99.10 E-value=1.2e-10 Score=120.16 Aligned_cols=108 Identities=24% Similarity=0.153 Sum_probs=82.0
Q ss_pred hhhhhcc-cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 006680 307 KRLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (635)
Q Consensus 307 ~~L~esy-relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~l 384 (635)
+.+..++ +++|++++++|.+||+|.+++ .||+|+|||+|+|+|+||.++++..++..+++++..+|+.+|++ -.+++
T Consensus 96 ~~~~~~~~~~lP~~~~qig~~fR~E~~~~-~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~G~~~~~~r~ 174 (254)
T cd00774 96 KNLLEFNRRKLPFGVAQIGKSFRNEISPR-NGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKFAQSPENLRL 174 (254)
T ss_pred HHHHHHhCCCCCchhhhhchhhccccCcc-cceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHcCCCccceEE
Confidence 3344455 499999999999999999999 99999999999999999999999999999999999999999985 33444
Q ss_pred ccCC--CCcCCChhhHHHHHHHHHHHHHHcCCC
Q 006680 385 STRP--EKYLGDLATWEKAEAALTEALNEFGKP 415 (635)
Q Consensus 385 s~r~--~~~lg~~~~~~~a~~~l~~~l~~~g~~ 415 (635)
...+ +..+-..++|+-.-..-...+...|++
T Consensus 175 ~~~~~~e~a~ya~~~~d~~~~~~~~w~e~~Gi~ 207 (254)
T cd00774 175 TDHEKEELAHYANETLDYFYAFPHGFLELEGIA 207 (254)
T ss_pred EecccHhhhhhhHHHHHHHHHHhhhHHHHcCCC
Confidence 3333 222333455655444444555555543
No 68
>PF07973 tRNA_SAD: Threonyl and Alanyl tRNA synthetase second additional domain; InterPro: IPR012947 The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain [].; GO: 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3KEW_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A 1NYQ_B 1NYR_A 2ZTG_A 2ZZF_A ....
Probab=98.84 E-value=3.1e-09 Score=81.03 Aligned_cols=43 Identities=44% Similarity=0.753 Sum_probs=33.8
Q ss_pred EEEEEeCC-eEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 250 ITVYRCGP-LVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 250 v~vYr~g~-~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
|++|++|+ ++|+|.||||+|||+|+.|+|++.++ .++.++|||
T Consensus 1 vRvv~i~~~~~~~C~GtHv~~T~~i~~~~i~~~~~-------~~~~~~RI~ 44 (44)
T PF07973_consen 1 VRVVRIGDFDVDLCGGTHVPNTGEIGHFKILKGES-------KGKGLRRIY 44 (44)
T ss_dssp EEEEEETTTEEEEESS---SBGGGG-CEEEEEEEE-------EETTEEEEE
T ss_pred CEEEEECCeeEECCCCcccCChhEECcEEEEEeEE-------EcCCcEEeC
Confidence 68999999 89999999999999999999995543 577888886
No 69
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=98.70 E-value=1.5e-08 Score=99.33 Aligned_cols=137 Identities=26% Similarity=0.330 Sum_probs=96.8
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe--EEEEEccCCCCc
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT--YELKLSTRPEKY 391 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~--~~l~ls~r~~~~ 391 (635)
+.+|++++++|.+||.+..+. ++.|++||.|.+++++|...+...++..+..++..+++.+|++ +.+...+.+..
T Consensus 72 ~~~~~~lfeig~vfr~e~~~~--~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~~~~~~~~~- 148 (211)
T cd00768 72 RKLPLRLAEIGPAFRNEGGRR--GLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVFVEKTPGEF- 148 (211)
T ss_pred ccCCEEEEEEcceeecCCCcc--ccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEEEecCchhh-
Confidence 468999999999999987643 2578899999999999987653344666999999999999973 44432221100
Q ss_pred CCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeee-cCCCeeeeeEEEecCCCccc
Q 006680 392 LGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLD-FQLPDRFNLGYSAEDEAKTE 470 (635)
Q Consensus 392 lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld-~~l~~~~~L~Y~~~~e~~~~ 470 (635)
|. +..|+..++.+.+..+|..+++++... .....+|++.|+.++ ++..
T Consensus 149 ------~~------------------------~~~g~~~~i~~~~~~~~~~eig~~g~~~~~~~~~~~l~~~~~~-~~~~ 197 (211)
T cd00768 149 ------SP------------------------GGAGPGFEIEVDHPEGRGLEIGSGGYRQDEQARAADLYFLDEA-LEYR 197 (211)
T ss_pred ------cc------------------------ccCCceEEEEEEccCCCeEEEeeceeecCchhHhhhhheeccc-cccc
Confidence 00 123555666665555666666666644 344456899998776 6777
Q ss_pred cccccccceeeeHHHH
Q 006680 471 RPVMIHRAILGSVERM 486 (635)
Q Consensus 471 ~p~~i~~ai~GgveR~ 486 (635)
.|+++|++ +|+||+
T Consensus 198 ~p~~~~~~--~~~~R~ 211 (211)
T cd00768 198 YPPTIGFG--LGLERL 211 (211)
T ss_pred CceeecCc--cCccCC
Confidence 89999988 899995
No 70
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.
Probab=98.66 E-value=5.6e-08 Score=76.40 Aligned_cols=61 Identities=59% Similarity=0.917 Sum_probs=55.5
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++|++++|+.+.++. ++|+.++++.++....+.+++|++||+++||++++..|++|+|++|
T Consensus 1 ~~i~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~v~~~vng~~~dL~~~l~~~~~ie~i~~ 61 (61)
T cd01667 1 IKITLPDGSVKEFPK-GTTPLDIAKSISPGLAKKAVAAKVNGELVDLSRPLEEDCELEIITF 61 (61)
T ss_pred CEEEcCCCCEEEeCC-CCCHHHHHHHHHHHHHhheEEEEECCEEecCCcCcCCCCEEEEEeC
Confidence 367889998888887 9999999999987777899999999999999999999999999986
No 71
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family. The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases.
Probab=98.60 E-value=1.1e-07 Score=106.01 Aligned_cols=76 Identities=22% Similarity=0.320 Sum_probs=68.5
Q ss_pred cccccceEEee-eccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 312 syrelPlrv~~-vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
++++||+++++ .+.+||+|..+. .|++|++||.+.+.|.+|+++++.++...+++....+++.||++|++...+-|
T Consensus 330 s~~dLPlk~~~~s~~CFR~EaGst-rGL~RvhEF~kvE~v~~~tpEea~e~~e~mle~~~~~l~~L~Lpyrv~~adDP 406 (520)
T TIGR00415 330 DAEDKPIKFFDRSGWTYRWEAGGA-KGLDRVHEFLRVECVWIAEPEETEEIRDKTLELAEDAADELDLEWWTEVGDDP 406 (520)
T ss_pred ChhhCCeeEEEEecCeEeCCCCCC-CCCceeeEEEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEeecCCc
Confidence 67799999999 568999998764 99999999999999999999999999999999999999999999998865544
No 72
>smart00863 tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain. The catalytically active form of threonyl/alanyl tRNA synthetase is a dimer. Within the tRNA synthetase class II dimer, the bound tRNA interacts with both monomers making specific interactions with the catalytic domain, the C-terminal domain, and this SAD domain (the second additional domain). The second additional domain is comprised of a pair of perpendicularly orientated antiparallel beta sheets, of four and three strands, respectively, that surround a central alpha helix that forms the core of the domain.
Probab=98.58 E-value=4.6e-08 Score=74.11 Aligned_cols=38 Identities=42% Similarity=0.843 Sum_probs=35.2
Q ss_pred EEEEEeCCe-EeecCCCCCCCCccccceEEeecccceec
Q 006680 250 ITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWR 287 (635)
Q Consensus 250 v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L 287 (635)
+++|.+|++ .++|.||||+||++|+.|+|++.++.+|.
T Consensus 1 vriv~i~~~~~~~C~GtHv~~t~~I~~i~i~~~~~~~~~ 39 (44)
T smart00863 1 VRVVSIGDFDVELCGGTHVPNTGEIGAFKILSVSGAYWG 39 (44)
T ss_pred CEEEEECCEEEECCCCcccCChhhCcEEEEEEEeeeecC
Confidence 579999998 89999999999999999999999887776
No 73
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=98.50 E-value=2.2e-07 Score=98.83 Aligned_cols=68 Identities=28% Similarity=0.460 Sum_probs=63.2
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
.+.|+|++++|.+||++.++. +|.|||+|.|+|+||.+++ +|+| ++.++.++++.||++ +.+.+|++.
T Consensus 84 ~~~p~r~~y~g~VfR~~~~~~----gr~re~~Q~g~Eiig~~~~~adaE---vi~l~~~~l~~lg~~~~~i~l~~~~ 153 (314)
T TIGR00443 84 RPLPLRLCYAGNVFRTNESGA----GRSREFTQAGVELIGAGGPAADAE---VIALLIEALKALGLKDFKIELGHVG 153 (314)
T ss_pred CCCCeEEEEeceEeecCCCcC----CCcccccccceEEeCCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCcHH
Confidence 467999999999999999886 8999999999999999988 8888 999999999999996 999998875
No 74
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=6.2e-07 Score=101.72 Aligned_cols=132 Identities=18% Similarity=0.316 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~ 230 (635)
+-.||++|||..|++++++..=-.|..+. .+-+.+||.. ...+|.+++.++|..|+++| +.|+...+++..+|+++
T Consensus 568 m~nHTaTHlLN~aLr~~l~~t~QkGSlV~-pdklRfDf~~-k~~lt~eql~~vE~~~ne~I~~~~~V~~~e~~l~~ak~i 645 (895)
T KOG0188|consen 568 MRNHTATHLLNFALRQVLKGTDQKGSLVA-PDKLRFDFST-KGALTKEQLKKVEDKINEFIQKNAPVYAKELPLAEAKKI 645 (895)
T ss_pred hhcchHHHHHHHHHHHhcccccccccccC-hhHeeeeccc-CCCCCHHHHHHHHHHHHHHHhcCCceEEEecCHHHHhcC
Confidence 34799999999999999922112244443 3678889975 44699999999999999999 99999999999999875
Q ss_pred hhcCcchhhhccc-CCCCCeEEEEEeCCe----EeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 231 FSDNNFKVEIIND-LPADKTITVYRCGPL----VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 231 F~~~~~K~~LL~~-~~~~~~v~vYr~g~~----iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
= +- .....+ -| +.|+|+.+|.. +.+|.|+|+-+||.|+.|-|+.-++ -.....||-
T Consensus 646 ~---gl-r~v~~E~YP--dpVRVVsvg~~~~~svE~CgGTH~~~t~~i~~fvI~se~~-------iakgirRiv 706 (895)
T KOG0188|consen 646 P---GL-RAVFDEVYP--DPVRVVSVGAGQLTSVEFCGGTHLTNTSHIGDFVIVSEEG-------IAKGIRRIV 706 (895)
T ss_pred C---Cc-ccccCCccC--CceEEEEeccccccceeecCCcccccccccceEEEechhh-------hhhceeEEE
Confidence 2 11 111222 33 57999999964 7789999999999999999987653 244566663
No 75
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=98.20 E-value=3.2e-06 Score=65.81 Aligned_cols=59 Identities=31% Similarity=0.396 Sum_probs=53.2
Q ss_pred EEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 85 ~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++.+++|..+++++ ++|+.|+++.++....+.++++++||+++||++++..|+.|+|++
T Consensus 2 ~~~~~~~~~~~~~~-g~t~~~~~~~~~~~~~~~~~~~~vn~~~~~l~~~l~~~~~i~~i~ 60 (60)
T cd01616 2 IIFTPDGSAVELPK-GATAMDFALKIHTDLGKGFIGALVNGQLVDLSYTLQDGDTVSIVT 60 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHHHHHHhheEEEEECCEECCCCcCcCCCCEEEEeC
Confidence 56777888888887 999999999998877789999999999999999999999999985
No 76
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=97.98 E-value=1.3e-05 Score=84.76 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=62.7
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHH-HhCCe-EEEEEccCC
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYR-IFGFT-YELKLSTRP 388 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~-~~G~~-~~l~ls~r~ 388 (635)
...|.|++++|++||++.++. ++.|||+|++++|||.++. +|+| ++.++.++++ .+|++ +.+.|+|..
T Consensus 85 ~~~~~r~~y~g~vfR~~~~~~----g~~re~~Q~g~Eiig~~~~~~daE---vi~l~~e~l~~~l~~~~~~i~i~h~~ 155 (311)
T PF13393_consen 85 LPRPKRYYYIGPVFRYERPGK----GRPREFYQCGFEIIGSSSLEADAE---VIKLADEILDRELGLENFTIRINHTG 155 (311)
T ss_dssp SSSSEEEEEEEEEEEEETTTT----TBESEEEEEEEEEESSSSHHHHHH---HHHHHHHHHHHHHTTTSEEEEEEEHH
T ss_pred cCCCceEEEEcceeeccccCC----CCCceeEEEEEEEECCCCHHHHHH---HHHHHHHHHHhhcCCCCcEEEEcCch
Confidence 467899999999999999887 7999999999999999987 9999 9999999996 99995 999999874
No 77
>PF12745 HGTP_anticodon2: Anticodon binding domain of tRNAs; InterPro: IPR024435 This is an anticodon binding domain, found largely on Gcn2 proteins which bind tRNA to down regulate translation in certain stress situations [].; GO: 0000049 tRNA binding
Probab=97.94 E-value=4.1e-05 Score=80.22 Aligned_cols=96 Identities=11% Similarity=0.291 Sum_probs=83.4
Q ss_pred ceEEEEecCCCcH-HHHHHHHHHHHHCCCEEEE-eCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHH
Q 006680 505 RQAIVCPVSEKSQ-PYALQVRDHIYRAGYYVDV-DTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVR 582 (635)
Q Consensus 505 ~qv~v~p~~~~~~-~~a~~v~~~L~~~G~~v~~-d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 582 (635)
-+|+||.++.... ....+|...|+.+||.+|+ .+...++... +.
T Consensus 6 CDVLV~S~~~~~L~~~~~~iv~~LW~~gIsAd~~~~~~~S~Eel----------------------------------~~ 51 (273)
T PF12745_consen 6 CDVLVCSFGPSSLRTEGIEIVQELWAAGISADLMYDASPSQEEL----------------------------------QS 51 (273)
T ss_pred ceEEEEeCChhHHHHHHHHHHHHHHHCCCceEeccccCCCHHHH----------------------------------HH
Confidence 4899999998776 8999999999999999999 3334577777 99
Q ss_pred HHhhcCCcEEEEEcccc------cccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 583 EAQLAQYNFILVVGEEE------AKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 583 ~A~~~~~~~~lvvG~~E------~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+|+..|+++++||=+.+ ...+.|.||+..+++...++.+||+++|...+.+|
T Consensus 52 ~~~~~gi~wiViikq~~~~~~~~~~~k~lKVK~l~~~~e~dv~~~eLv~~l~~ei~~r 109 (273)
T PF12745_consen 52 YCREDGISWIVIIKQKEKSSSSKSKYKPLKVKSLEKKKETDVDRDELVDWLQQEIRER 109 (273)
T ss_pred HHHHCCCCEEEEEecccccccCCCccCceEEeccCCCcccccCHHHHHHHHHHHHHhh
Confidence 99999999999998876 23345999999999999999999999999988765
No 78
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=97.93 E-value=2.3e-05 Score=62.30 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=52.8
Q ss_pred EEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 85 ~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
-|.+|||+.+++.. ++|+.++++.++......++++.+||+++|+++++..+++|++++
T Consensus 2 ~~~~~~g~~~~~~~-~~t~~~~~~~~~~~~~~~~va~~vng~~vdl~~~l~~~~~ve~v~ 60 (60)
T cd01668 2 YVFTPKGEIIELPA-GATVLDFAYAIHTEIGNRCVGAKVNGKLVPLSTVLKDGDIVEIIT 60 (60)
T ss_pred EEECCCCCEEEcCC-CCCHHHHHHHHChHhhhheEEEEECCEECCCCCCCCCCCEEEEEC
Confidence 46788999888887 999999999888777778999999999999999999999999875
No 79
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.93 E-value=1.3e-05 Score=87.51 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=57.6
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCc-h-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-Q-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~-~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
..|.|++++|++||++ . +|.|||+|.|+++||..+ . +|+| ++.++.++++.+|++ +.+.+|++.
T Consensus 80 ~~p~R~~Y~g~VfR~~-~------gr~rEf~Q~GvEiiG~~~~~~aDaE---vi~l~~~~L~~lgl~~~~i~ig~~~ 146 (373)
T PRK12295 80 GEPARYAYLGEVFRQR-R------DRASEFLQAGIESFGRADPAAADAE---VLALALEALAALGPGDLEVRLGDVG 146 (373)
T ss_pred CCCeEEEEEccEEECC-C------CCCCcceEeeEEeeCCCCCccchHH---HHHHHHHHHHHcCCCceEEEeCCHH
Confidence 5689999999999999 2 589999999999999754 4 8999 999999999999997 999999985
No 80
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=2.9e-05 Score=85.45 Aligned_cols=144 Identities=25% Similarity=0.484 Sum_probs=100.4
Q ss_pred cccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEE-ccCCC
Q 006680 314 AELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKL-STRPE 389 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~l-s~r~~ 389 (635)
.++|+++..++++||.|... ..+||+|+.||+.-+.-.||.+++...+...++....++++.|+++|++-. .|..
T Consensus 250 ~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v~~~~Pe~S~~~~E~m~~~ae~il~~LeLPyRvv~lctGD- 328 (429)
T COG0172 250 EDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELVVITKPEESEEELEEMLGNAEEVLQELELPYRVVNLCTGD- 328 (429)
T ss_pred ccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEEEEeCcchhHHHHHHHHHHHHHHHHHhCCCceEeeeccCC-
Confidence 36899999999999999866 369999999999999999999999888888899999999999999977653 4421
Q ss_pred CcCCChhhHHHHHHHHHHHHHHcCCCcEE---cCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCC
Q 006680 390 KYLGDLATWEKAEAALTEALNEFGKPWQI---NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDE 466 (635)
Q Consensus 390 ~~lg~~~~~~~a~~~l~~~l~~~g~~~~~---~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e 466 (635)
+|-.+. +.|.+ -|+.+.| +....|.. .-||| ++|++..|....+
T Consensus 329 --lgf~a~----------------kkYDlEvWlP~q~~y-------------rEisScSn-c~DfQ-aRR~~~Ryr~~~~ 375 (429)
T COG0172 329 --LGFSAA----------------KKYDLEVWLPGQNKY-------------REISSCSN-CTDFQ-ARRLNIRYRDKEE 375 (429)
T ss_pred --cCCccc----------------CceeEEEEecCCCCc-------------eeeeeeec-cccHH-HHHHhcccccccC
Confidence 222110 01111 1332222 11222322 24676 6788999975432
Q ss_pred Cccccccccccceeee---HHHHHHHHHHHhC
Q 006680 467 AKTERPVMIHRAILGS---VERMFAILLEHYK 495 (635)
Q Consensus 467 ~~~~~p~~i~~ai~Gg---veR~~~~l~e~~~ 495 (635)
++ +..+| ++-|+ +.|.+.+++|+|.
T Consensus 376 ~k---~~~vh-TLNGsglA~~R~l~AilENyq 403 (429)
T COG0172 376 GK---REFVH-TLNGSGLAVGRTLVAILENYQ 403 (429)
T ss_pred CC---cEEEE-eccchHHHHHHHHHHHHHccc
Confidence 33 34456 67773 8899999999875
No 81
>KOG2105 consensus Predicted metal-dependent hydrolase, contains AlaS domain [General function prediction only]
Probab=97.68 E-value=0.00024 Score=73.71 Aligned_cols=142 Identities=14% Similarity=0.199 Sum_probs=99.4
Q ss_pred eccccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHH
Q 006680 129 DMTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDS 207 (635)
Q Consensus 129 DL~~pl~~d~~lef-l~f~s~eG~~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~ 207 (635)
-.+.||+...+|+. +|+... ---+-+||..|++.+.+.++|..+-+ .-++ +||.--+.++-.++|.+++.+|++
T Consensus 85 ~~~~~iePGt~V~V~VD~qkR-~D~MQQHsGQHLitAvad~~fKlkTt-SWel---G~~~sa~e~~~~~mTaeqvaaieq 159 (415)
T KOG2105|consen 85 HVNDYIEPGTTVEVAVDEQKR-MDYMQQHSGQHLITAVADHLFKLKTT-SWEL---GRFRSAIELDTPSMTAEQVAAIEQ 159 (415)
T ss_pred ccCCCCCCCCeEEEEecHHHH-hHHHHHhcchhHHHHHHHhhhcccee-eeec---cceeeccccCCCCccHHHHHHHHH
Confidence 45678887777775 544322 11245999999999999999965422 2222 366666665446789999999999
Q ss_pred HHHHHh--cCCeEEEEeCHHH--HHHHhhcCcchhhhcccCCC--CCeEEEEEeCCe-EeecCCCCCCCCccccceEEee
Q 006680 208 EADKAA--KQPFERIEVTRDQ--ALEMFSDNNFKVEIINDLPA--DKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLK 280 (635)
Q Consensus 208 ~m~eiI--~~pIer~~vsree--Ale~F~~~~~K~~LL~~~~~--~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k 280 (635)
.+|+.| -+|....+.+.++ ..+.-. ...|+ ...++++.+|+. ...|.|+||.+|+.|+.++|+.
T Consensus 160 svNe~I~d~~~~~v~E~sl~d~eVeqVS~---------~~~~D~haG~iRvvnI~~vDSN~CCGTHvs~~Sdl~vI~ILg 230 (415)
T KOG2105|consen 160 SVNEKIRDRLPVNVRELSLDDPEVEQVSG---------RGLPDDHAGPIRVVNIEGVDSNMCCGTHVSNLSDLQVIKILG 230 (415)
T ss_pred HHHHHHHhccchheeecccCCcchhhccC---------CCCcccccCceEEEeecCccCCccccccccchhhcceEEEee
Confidence 999999 5666665555432 222111 11222 357999999985 3479999999999999999998
Q ss_pred cccc
Q 006680 281 ASSA 284 (635)
Q Consensus 281 ~s~g 284 (635)
+..|
T Consensus 231 tekg 234 (415)
T KOG2105|consen 231 TEKG 234 (415)
T ss_pred cccc
Confidence 8765
No 82
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=97.67 E-value=5.7e-05 Score=79.53 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=53.9
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
..|+|++++|++||++. |||+|.|++++|.++. +| ++.++.++++.+|+++.+.+|++.
T Consensus 93 ~~p~r~~Y~g~vfR~~~----------rEf~Q~GvEliG~~~~--~E---vi~la~~~l~~lgl~~~i~ig~~~ 151 (281)
T PRK12293 93 TEHKKWFYIQPVFRYPS----------NEIYQIGAELIGEEDL--SE---ILNIAAEIFEELELEPILQISNIK 151 (281)
T ss_pred CCceeEEEeccEEecCC----------CcccccCeEeeCCCCH--HH---HHHHHHHHHHHcCCCCEEEECCHH
Confidence 57899999999999873 8999999999999986 47 999999999999999889999985
No 83
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=8.7e-05 Score=80.85 Aligned_cols=155 Identities=25% Similarity=0.505 Sum_probs=104.1
Q ss_pred cccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCC
Q 006680 314 AELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEK 390 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~ 390 (635)
.++|+++.-++.|||.|... +-.||.||.||..-+.-++|.+++..+++..++.+..++|..||++|++- +-|..
T Consensus 263 ~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fvit~Pe~S~~~~eEmi~~~eef~qsLgip~rvl--~m~S~ 340 (455)
T KOG2509|consen 263 DQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFVITGPEDSWEMLEEMINNQEEFYQSLGLPYRVL--NMPSG 340 (455)
T ss_pred ccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEEecCcchhHHHHHHHHHHHHHHHHHhCCceeEe--cCCch
Confidence 57999999999999999832 45899999999998888888888777777779999999999999998753 22445
Q ss_pred cCCChhhHHHHHHHHHHHHHHcCCC-cEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEE---ecCC
Q 006680 391 YLGDLATWEKAEAALTEALNEFGKP-WQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYS---AEDE 466 (635)
Q Consensus 391 ~lg~~~~~~~a~~~l~~~l~~~g~~-~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~---~~~e 466 (635)
-||.++.. ++.++ | -||-|+| | ....|. -..||| ++|.++.|. +.+
T Consensus 341 eLg~aAak------------KyDiEAW--mPgrg~y-g------------El~ScS-NCTDyQ-SRRL~IRy~~~k~~~- 390 (455)
T KOG2509|consen 341 ELGAAAAK------------KYDIEAW--MPGRGAY-G------------ELVSCS-NCTDYQ-SRRLGIRYGQKKTND- 390 (455)
T ss_pred hhCcHHHh------------hcchhhh--cCccccc-c------------cccccc-cchhHH-HhhhhhhcccccccC-
Confidence 56665421 11111 2 2565554 1 111222 236777 577888887 333
Q ss_pred Cccccccccccceee---eHHHHHHHHHHHhC---C-CCCCCCCC
Q 006680 467 AKTERPVMIHRAILG---SVERMFAILLEHYK---G-KWPFWLSP 504 (635)
Q Consensus 467 ~~~~~p~~i~~ai~G---gveR~~~~l~e~~~---g-~~p~~lsp 504 (635)
++... +| .+-| -+.|++-+|+|+|. | ..|.-|-|
T Consensus 391 ~~~~y---vH-tLN~TacA~~R~l~aiLEnyQ~edGi~VPe~Lr~ 431 (455)
T KOG2509|consen 391 GEKKY---VH-TLNGTACATPRALCAILENYQTEDGIEVPEVLRP 431 (455)
T ss_pred Cccce---ee-ecchhhHhhhHHHHHhHhhccCCCCccCCHhHHh
Confidence 22222 44 2333 68999999999884 4 35544433
No 84
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00074 Score=73.88 Aligned_cols=119 Identities=20% Similarity=0.255 Sum_probs=83.2
Q ss_pred CCCCCCCccc---cceEEeecccceeccCCCCC-CcceeeccccCChhhhhhcccccceEEeeeccccccccCCCCcCce
Q 006680 264 GPHIPNTSFV---KGFGCLKASSAYWRGNKDRE-SLQRVYGISYPDKKRLKHAFAELPLRLADFGVLHRNEASGALTGLT 339 (635)
Q Consensus 264 GPhVpsTG~I---k~F~L~k~s~g~~L~~p~~~-~lqRIyG~~fp~~~~L~esyrelPlrv~~vG~lnR~E~~g~l~gLi 339 (635)
.|....+|.+ +.|++....++-+-.-|+-. .+-|++ .+.....|.|++|.|++||.. .+. -+
T Consensus 48 d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~----------~~~~~~~P~Rl~Y~G~Vfr~~-~~~---~g 113 (390)
T COG3705 48 DPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIH----------ATLLAGTPLRLSYAGKVFRAR-EGR---HG 113 (390)
T ss_pred hhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHH----------HHhcCCCCceeeecchhhhcc-hhc---cC
Confidence 4666666666 67888776655422233321 122322 122334899999999999999 333 15
Q ss_pred eeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC-----CCcCCChhhHH
Q 006680 340 RVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP-----EKYLGDLATWE 399 (635)
Q Consensus 340 RvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~-----~~~lg~~~~~~ 399 (635)
+-.||+|.++|++|..+. +|+| |+..+..+++.+|+. +++.|++-. -..+|-+..|.
T Consensus 114 ~~~Ef~QaGiEllG~~~~~ADaE---vi~la~~~L~~~gl~~~~l~LG~~gif~all~~~~l~~~~~ 177 (390)
T COG3705 114 RRAEFLQAGIELLGDDSAAADAE---VIALALAALKALGLADLKLELGHAGIFRALLAAAGLPGGWR 177 (390)
T ss_pred cccchhhhhhHHhCCCcchhhHH---HHHHHHHHHHHcCCcCeEEEeccHHHHHHHHHHcCCChhHH
Confidence 677999999999999876 9999 999999999999986 999997753 12345555553
No 85
>PRK07080 hypothetical protein; Validated
Probab=97.17 E-value=0.0014 Score=69.43 Aligned_cols=68 Identities=18% Similarity=0.130 Sum_probs=56.6
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
..+.-.|.+||+|.+ .++.|+.+|+|-+.=-+|+++++.+=-...++....+.+.||+++++...+-|
T Consensus 153 ~~~dv~g~CFR~E~s---~dl~Rl~~F~mrE~V~iGt~e~v~~~r~~w~e~~~~l~~~LgL~~~ve~AnDP 220 (317)
T PRK07080 153 RLVDVASYCFRHEPS---LDPARMQLFRMREYVRIGTPEQIVAFRQSWIERGTAMADALGLPVEIDLANDP 220 (317)
T ss_pred cEEEeeeeeeccCCC---CCcHHHhheeeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCceeEeecCCc
Confidence 445567999999985 47899999999999999999886544455788888899999999999987766
No 86
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=96.97 E-value=0.0012 Score=73.09 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=52.3
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEE
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK 383 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ 383 (635)
.+|+|++++|++||+|..+. +++|||+|.|+.+++..... .| +..++..+++.||++|++.
T Consensus 316 ~~PqKIFEIGkVFR~E~~~~----thlREF~QL~~eIaG~~atf-aD---lealL~e~Lr~LGIdfeit 376 (453)
T TIGR02367 316 PDPIKIFEIGPCYRKESDGK----EHLEEFTMLNFCQMGSGCTR-EN---LEAIIKDFLDHLEIDFEIV 376 (453)
T ss_pred cCCeeEEEEcCeEecCCCCC----CCcCeEEEEEEEEECCCCCH-HH---HHHHHHHHHHHCCCceEEe
Confidence 67999999999999999887 89999999999999987662 23 4468999999999987763
No 87
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.96 E-value=0.0023 Score=72.33 Aligned_cols=103 Identities=17% Similarity=0.140 Sum_probs=89.1
Q ss_pred CCCCCCCCceEEEEecCC-------CcHHHHHHHHHHHHHCCCEEEEeC-CCCCcCCCCCcccccccceeeeeehhhhhh
Q 006680 497 KWPFWLSPRQAIVCPVSE-------KSQPYALQVRDHIYRAGYYVDVDT-TDRKIQKKPNSFVHARSTYIEVVFSCWEEL 568 (635)
Q Consensus 497 ~~p~~lsp~qv~v~p~~~-------~~~~~a~~v~~~L~~~G~~v~~d~-~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~ 568 (635)
..|+.++|.||.++|..- ....++..++..|...|++++.|. .+...|.|
T Consensus 278 v~Pp~vA~~qV~~~~~~~~ga~~h~~~~~~~rd~~~~l~~~~~~~~~D~~~~~~~G~k---------------------- 335 (500)
T COG0442 278 VLPPIVADIQVVIVPIFIKGANEHYKVVNYGRDVAEPLEKLGIRVEGDDRSPDGPGFK---------------------- 335 (500)
T ss_pred cCCchhccceEEEEeccccCcchhhhhhhhhhhhhhhhhhcceEEeccccCCCCCCce----------------------
Confidence 478889999999999742 267889999999999999999995 57999999
Q ss_pred hcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCc--eecccHHHHHHH-HHHHHHh
Q 006680 569 VAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGD--HSNMSIEDLLKH-FKEKLEA 633 (635)
Q Consensus 569 ~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~--~~~~~~e~l~~~-~~~~~~~ 633 (635)
+..++..++|.++-+|.++.++++++|-++++.+ ....+....+.. +.+.+++
T Consensus 336 ------------l~~~e~ieVghif~lG~kyse~~~a~v~~r~g~~~~~~mg~ygigvsr~v~a~ieq 391 (500)
T COG0442 336 ------------LNIWEGIEVGHIFELGTKYSEAMNATVLDRDGKEQPKTMGCYGIGVSRLVAALLEQ 391 (500)
T ss_pred ------------eeeeeccccCEEEEECchhhhhCeeEEEecCCCccceEEEehhhhhhhHHHHHHHH
Confidence 9999999999999999999999999999999988 566778877777 6665554
No 88
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=96.23 E-value=0.0077 Score=66.67 Aligned_cols=63 Identities=17% Similarity=0.346 Sum_probs=50.3
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEE
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK 383 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ 383 (635)
+.++|+|++++|.+||+|..+. .+++||+|.++.+++.... -.| +..++..+++.||++|.+.
T Consensus 278 ~~~~P~RIFEIG~VFR~E~~g~----~hlrEf~Ql~~~iiGs~~~-f~d---L~~lleeLL~~LGI~f~i~ 340 (417)
T PRK09537 278 ILPDPIKIFEIGPCYRKESDGK----EHLEEFTMVNFCQMGSGCT-REN---LENIIDDFLKHLGIDYEII 340 (417)
T ss_pred cccCCeeEEEEeceEecCCCCC----CCcceEEEEEEEEeCCchH-HHH---HHHHHHHHHHHCCCCcEEe
Confidence 4578999999999999998876 7899999999999875433 233 6688888888888876544
No 89
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=95.99 E-value=0.01 Score=69.91 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=60.4
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s 147 (635)
+.|-|.-|+|..+..+. |.||.|.|=.+....+..++.|+|||++++|+++|.....||++|-+.
T Consensus 386 d~v~VfTP~G~v~~LP~-GaT~lDFAY~iHt~iG~~c~gAkVNg~~vpL~~~L~~Gd~VeIiT~~~ 450 (702)
T PRK11092 386 DEIYVFTPEGRIVELPA-GATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG 450 (702)
T ss_pred ceEEEECCCCCEEeCCC-CCchhhhhHhhCchhhceeEEEEECCEECCCCccCCCCCEEEEEeCCC
Confidence 66888889999999999 999999999999999999999999999999999999999999999654
No 90
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=95.72 E-value=0.019 Score=64.88 Aligned_cols=59 Identities=24% Similarity=0.368 Sum_probs=51.1
Q ss_pred ceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEE
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELK 383 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ 383 (635)
|++++++|.+||++.... ++++||+|.|..+++... ..++ ++.++.++|+.+|++ ++++
T Consensus 357 P~k~fsigrVfR~d~~Da----tH~~eFhQ~Eg~vi~~~~-s~~~---L~~~l~~f~~~lG~~~~Rfr 416 (494)
T PTZ00326 357 PKKYFSIDRVFRNETLDA----THLAEFHQVEGFVIDRNL-TLGD---LIGTIREFFRRIGITKLRFK 416 (494)
T ss_pred CceEEecCCEecCCCCCC----CcCceeEEEEEEEEeCCC-CHHH---HHHHHHHHHHhcCCCceEEe
Confidence 899999999999999887 899999999999998875 4556 888999999999984 4444
No 91
>PRK07440 hypothetical protein; Provisional
Probab=95.54 E-value=0.058 Score=45.21 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
..|+|++ +|+.++... ++|+.++.+.+. +....+++.+||++.+ -.++|..+.+||+++|
T Consensus 3 ~~m~i~v-NG~~~~~~~-~~tl~~lL~~l~--~~~~~vav~~N~~iv~r~~w~~~~L~~gD~IEIv~~ 66 (70)
T PRK07440 3 NPITLQV-NGETRTCSS-GTSLPDLLQQLG--FNPRLVAVEYNGEILHRQFWEQTQVQPGDRLEIVTI 66 (70)
T ss_pred CceEEEE-CCEEEEcCC-CCCHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 3589998 788888877 899999998774 3567888899999998 8899999999999986
No 92
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=95.40 E-value=0.057 Score=44.18 Aligned_cols=58 Identities=17% Similarity=0.166 Sum_probs=47.2
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
++|++ ||+.++..+ ++|+.++...+.- ...-++..+||++++ .+++|..+.+|+++.+
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~lL~~l~~--~~~~vav~vNg~iv~r~~~~~~~l~~gD~vei~~~ 62 (66)
T PRK05659 1 MNIQL-NGEPRELPD-GESVAALLAREGL--AGRRVAVEVNGEIVPRSQHASTALREGDVVEIVHA 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHhcCC--CCCeEEEEECCeEeCHHHcCcccCCCCCEEEEEEE
Confidence 46777 888888888 8999999988753 344555669999988 9999999999999876
No 93
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=94.93 E-value=0.048 Score=63.87 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=60.1
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s 147 (635)
+.|-|.-|.|..++.+. |+||.|+|=.+.......++.|+|||++.+|+++|+....||++|-..
T Consensus 387 d~VyvfTPkG~vi~LP~-GatplDFAY~vHt~iG~~c~gAkVnG~ivpl~~~Lk~Gd~VEIit~k~ 451 (701)
T COG0317 387 DRVYVFTPKGKVIDLPK-GATPLDFAYAVHTDIGHRCIGAKVNGRIVPLTTKLQTGDQVEIITSKH 451 (701)
T ss_pred ceEEEECCCCCEEeCCC-CCcchhhhhhhhchhcceeeEEEECCEEeccceecCCCCEEEEEeCCC
Confidence 55667779999999998 999999999998888999999999999999999999999999999877
No 94
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=94.84 E-value=0.11 Score=43.44 Aligned_cols=59 Identities=20% Similarity=0.294 Sum_probs=50.2
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
+|+|.+ +|+..+... ++|+.|+.+++. +....+++.+||++.. .+..++....|+++.+
T Consensus 2 ~m~i~~-ng~~~e~~~-~~tv~dLL~~l~--~~~~~vav~vNg~iVpr~~~~~~~l~~gD~ievv~~ 64 (68)
T COG2104 2 PMTIQL-NGKEVEIAE-GTTVADLLAQLG--LNPEGVAVAVNGEIVPRSQWADTILKEGDRIEVVRV 64 (68)
T ss_pred cEEEEE-CCEEEEcCC-CCcHHHHHHHhC--CCCceEEEEECCEEccchhhhhccccCCCEEEEEEe
Confidence 578888 688888777 699999998875 4567899999999999 9999999889998875
No 95
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=94.79 E-value=0.045 Score=64.80 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=60.1
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCC
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDS 147 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s 147 (635)
+.|-|.-|+|+.+..+. |+||.|+|-.+........+.|+|||+..+|+++|.....||++|-+.
T Consensus 404 d~V~VfTPkG~~~~Lp~-gaT~lDfAy~iHt~iG~~~~gAkvng~~v~l~~~L~~GD~VeIits~~ 468 (743)
T PRK10872 404 DRVYVFTPKGDVVDLPA-GSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQ 468 (743)
T ss_pred CeEEEECCCCCeEEcCC-CCcHHHHHHHHhHHHHhhceEEEECCEECCCCcCCCCCCEEEEEeCCC
Confidence 56888889999999998 999999999998888999999999999999999999999999998655
No 96
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=94.72 E-value=0.053 Score=64.02 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=61.1
Q ss_pred CCCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCCh
Q 006680 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSD 148 (635)
Q Consensus 81 ~~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~ 148 (635)
.+.|-|.-|+|..+..+. |+||.|+|-.+....+...+.|+|||+.++|+++|+....|++++-+..
T Consensus 359 ~~~i~vfTPkG~~~~lp~-gst~~DfAy~ih~~~g~~~~~a~vng~~v~l~~~l~~gd~vei~t~~~~ 425 (683)
T TIGR00691 359 NEEIYVFTPKGDVVELPS-GSTPVDFAYAVHTDVGNKCTGAKVNGKIVPLDKELENGDVVEIITGKNS 425 (683)
T ss_pred cCceEEECCCCeEEEcCC-CCCHHHHHHHHhHHhHhceeEEEECCEECCCCccCCCCCEEEEEeCCCC
Confidence 367888889999999998 9999999999998889999999999999999999999999999987653
No 97
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=94.66 E-value=0.1 Score=43.65 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=47.7
Q ss_pred CeEEEeCCCc----EEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 83 PIKITLPDGS----VKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 83 ~I~Itl~dg~----~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
+|+|++ +|+ .++... ++|+.|+++++.- ....++..+||++...+++|..+.+|+++.+
T Consensus 4 mm~v~v-ng~~~~~~~~~~~-~~tv~~ll~~l~~--~~~~v~v~vNg~iv~~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 4 MIRVKV-IGRGIEKEIEWRK-GMKVADILRAVGF--NTESAIAKVNGKVALEDDPVKDGDYVEVIPV 66 (70)
T ss_pred EEEEEE-eccccceEEEcCC-CCcHHHHHHHcCC--CCccEEEEECCEECCCCcCcCCCCEEEEEcc
Confidence 478888 565 555555 8999999998864 3466888899999989999999999999875
No 98
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=93.84 E-value=0.18 Score=41.80 Aligned_cols=59 Identities=10% Similarity=0.181 Sum_probs=47.3
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeecc----ccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~----~pl~~d~~lefl~f 145 (635)
++|++ +|+.++.....+|+.|+.+.+. +....+++.+||++.+-+ ++|..+.+||+++|
T Consensus 1 m~I~v-NG~~~~~~~~~~tv~~lL~~l~--~~~~~vav~vN~~iv~r~~w~~~~L~~gD~iEIv~~ 63 (67)
T PRK07696 1 MNLKI-NGNQIEVPESVKTVAELLTHLE--LDNKIVVVERNKDILQKDDHTDTSVFDGDQIEIVTF 63 (67)
T ss_pred CEEEE-CCEEEEcCCCcccHHHHHHHcC--CCCCeEEEEECCEEeCHHHcCceecCCCCEEEEEEE
Confidence 46777 7888877762378999998875 345678888999998777 88999999999986
No 99
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=93.81 E-value=0.15 Score=41.76 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=45.8
Q ss_pred EEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeecc----ccccCCCCeEEeeCC
Q 006680 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTFD 146 (635)
Q Consensus 86 Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~----~pl~~d~~lefl~f~ 146 (635)
|++ +|+.++... ++|+.++.+.+.- ....++..|||++.+.. .+|..+.+|+++.+-
T Consensus 2 i~i-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~i~V~vNg~~v~~~~~~~~~L~~gD~V~ii~~v 62 (65)
T cd00565 2 ITV-NGEPREVEE-GATLAELLEELGL--DPRGVAVALNGEIVPRSEWASTPLQDGDRIEIVTAV 62 (65)
T ss_pred EEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCceecCCCCEEEEEEec
Confidence 455 788888877 8999999998863 33455666999999998 899999999998763
No 100
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=93.69 E-value=0.21 Score=40.65 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=45.6
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL----~~pl~~d~~lefl~f 145 (635)
++|++ +|+.++.+. ++|+.++...+... +-++..|||++++- ..+|..+.+|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~~---~~~~v~vN~~~v~~~~~~~~~L~~gD~vei~~~ 61 (65)
T PRK06944 1 MDIQL-NQQTLSLPD-GATVADALAAYGAR---PPFAVAVNGDFVARTQHAARALAAGDRLDLVQP 61 (65)
T ss_pred CEEEE-CCEEEECCC-CCcHHHHHHhhCCC---CCeEEEECCEEcCchhcccccCCCCCEEEEEee
Confidence 46777 788888877 89999999887642 34677899999875 678999889999875
No 101
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=93.66 E-value=0.23 Score=40.65 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=46.0
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL----~~pl~~d~~lefl~f 145 (635)
|+|++ +|+.++. . .+|+.++...+.- ....+++-||+++++- +++|....+|+++.+
T Consensus 1 m~i~~-Ng~~~~~-~-~~tl~~Ll~~l~~--~~~~vavavN~~iv~~~~~~~~~L~dgD~Ieiv~~ 61 (65)
T PRK06488 1 MKLFV-NGETLQT-E-ATTLALLLAELDY--EGNWLATAVNGELVHKEARAQFVLHEGDRIEILSP 61 (65)
T ss_pred CEEEE-CCeEEEc-C-cCcHHHHHHHcCC--CCCeEEEEECCEEcCHHHcCccccCCCCEEEEEEe
Confidence 46777 7777776 4 5799999988753 3467888899999987 789999999999886
No 102
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=93.61 E-value=0.26 Score=40.58 Aligned_cols=58 Identities=7% Similarity=0.133 Sum_probs=45.9
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
++|++ +|+.++... ++|+.++.+.++. ..+.++.-||+++.+ -.++|..+.+|+++.+
T Consensus 1 m~i~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaVavN~~iv~r~~w~~~~L~~gD~Ieii~~ 62 (66)
T PRK08053 1 MQILF-NDQPMQCAA-GQTVHELLEQLNQ--LQPGAALAINQQIIPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_pred CEEEE-CCeEEEcCC-CCCHHHHHHHcCC--CCCcEEEEECCEEeChHHcCccccCCCCEEEEEEE
Confidence 46777 788888877 8999999988754 345688889999965 4457888889999876
No 103
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional
Probab=93.40 E-value=0.15 Score=57.99 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=50.6
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEE
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YEL 382 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l 382 (635)
....|++++++|.+||++..+. .+++||+|.++.+.|.+.. ..| +..++..+++.+|++ +++
T Consensus 346 ~~~~p~rlFeiGrVFR~e~~d~----~~l~Ef~ql~~~i~G~~~~-f~e---lkg~l~~ll~~lGi~~~~~ 408 (489)
T PRK04172 346 RPEPPQKYFSIGRVFRPDTIDA----THLPEFYQLEGIVMGEDVS-FRD---LLGILKEFYKRLGFEEVKF 408 (489)
T ss_pred cCCCCeEEEEecceEcCCCCCc----ccCCchheEEEEEEeCCCC-HHH---HHHHHHHHHHHhCCceEEE
Confidence 3467999999999999998765 6789999999999997432 345 788899999999995 544
No 104
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=92.45 E-value=0.21 Score=52.57 Aligned_cols=58 Identities=10% Similarity=-0.004 Sum_probs=46.0
Q ss_pred cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EE-EEEccC
Q 006680 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YE-LKLSTR 387 (635)
Q Consensus 316 lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~-l~ls~r 387 (635)
.|.|+++.|++||++. +|+|.+++++|....++.| ++.++.+++..+|.. +. +.|+|-
T Consensus 83 ~~~Rl~Y~g~VfR~~~-----------~~~Q~GvEliG~~~~a~~e---~l~la~~~l~~~g~~~~~~i~lGh~ 142 (272)
T PRK12294 83 AATKVAYAGLIIRNNE-----------AAVQVGIENYAPSLANVQQ---SFKLFIQFIQQQLRDNVHFVVLGHY 142 (272)
T ss_pred CCceEEEeccEeccCC-----------CcceeceEEECCCchhHHH---HHHHHHHHHHHhCCCCCcEEEeccH
Confidence 4569999999999874 3899999999955457777 789989999999654 43 677664
No 105
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=90.66 E-value=1.2 Score=38.86 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 81 HDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 81 ~~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
+.+|+|++ +|+.++... ++|+.++...+. +....++..+||++.+ -+..|..+.+||+++|
T Consensus 16 ~~~m~I~V-NG~~~~~~~-~~tl~~LL~~l~--~~~~~vAVevNg~iVpr~~w~~t~L~egD~IEIv~~ 80 (84)
T PRK06083 16 MVLITISI-NDQSIQVDI-SSSLAQIIAQLS--LPELGCVFAINNQVVPRSEWQSTVLSSGDAISLFQA 80 (84)
T ss_pred CceEEEEE-CCeEEEcCC-CCcHHHHHHHcC--CCCceEEEEECCEEeCHHHcCcccCCCCCEEEEEEE
Confidence 45788998 888888887 899999998874 4556777789999773 2455777788999876
No 106
>PRK06437 hypothetical protein; Provisional
Probab=90.13 E-value=0.97 Score=37.50 Aligned_cols=52 Identities=15% Similarity=0.150 Sum_probs=40.8
Q ss_pred cEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCC
Q 006680 92 SVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFD 146 (635)
Q Consensus 92 ~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~ 146 (635)
+.++... ++|+.|+++.+.-. ..-+++.+||++.+.+++|....+|+++.+-
T Consensus 13 ~~~~i~~-~~tv~dLL~~Lgi~--~~~vaV~vNg~iv~~~~~L~dgD~Veiv~~V 64 (67)
T PRK06437 13 KTIEIDH-ELTVNDIIKDLGLD--EEEYVVIVNGSPVLEDHNVKKEDDVLILEVF 64 (67)
T ss_pred eEEEcCC-CCcHHHHHHHcCCC--CccEEEEECCEECCCceEcCCCCEEEEEecc
Confidence 3455555 89999999988643 3344555999999999999998999998863
No 107
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]
Probab=89.85 E-value=3.4 Score=51.24 Aligned_cols=89 Identities=10% Similarity=0.204 Sum_probs=65.6
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCC-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhH
Q 006680 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSV 581 (635)
Q Consensus 503 sp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 581 (635)
+..+|.||.++......+..+.+.||..||.+++=.. ...+... -
T Consensus 1258 ~~cdvlics~g~~l~t~~~~l~~~LWs~gI~a~i~~~~s~~~~e~----------------------------------~ 1303 (1351)
T KOG1035|consen 1258 SSCDVLICSRGSGLLTQRMELVAKLWSKGIKAEIVPDPSPSLEEL----------------------------------T 1303 (1351)
T ss_pred ccccEEEEecCCchHHHHHHHHHHHHHcCcccceeeCCCcchHHH----------------------------------H
Confidence 4568999999988899999999999999999997543 4555555 7
Q ss_pred HHHhhcCCcEEEEEcccccccCeEEEEEcCCC--ceecccHHHHHHHHHHH
Q 006680 582 REAQLAQYNFILVVGEEEAKSGQVSVRVRDQG--DHSNMSIEDLLKHFKEK 630 (635)
Q Consensus 582 r~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~--~~~~~~~e~l~~~~~~~ 630 (635)
.+|+..-+.+++||- ++.+.||.+.-. ....+-..||++++...
T Consensus 1304 e~~~~~~i~~iliv~-----n~~~~vks~~~e~~se~~~~~~elv~f~~~~ 1349 (1351)
T KOG1035|consen 1304 EYANEHEITCILIVT-----NQKEKVKSFELERKSEKVVGRTELVEFLLQA 1349 (1351)
T ss_pred HHHhcCceEEEEEEe-----cceeeechhHHhhhhhhhhhHHHHHHHHHHh
Confidence 778888888888886 666666665422 22334456788777654
No 108
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=89.62 E-value=0.81 Score=37.60 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=43.6
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCE-----EeeccccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGV-----LWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~-----l~DL~~pl~~d~~lefl~f 145 (635)
++|++ +|+.++..+ ++|+.++...+. +...-++..+||+ -|+ +.|....+|+++.+
T Consensus 1 m~i~v-NG~~~~~~~-~~tl~~ll~~l~--~~~~~vav~~N~~iv~r~~~~--~~L~~gD~ieIv~~ 61 (65)
T PRK05863 1 MIVVV-NEEQVEVDE-QTTVAALLDSLG--FPEKGIAVAVDWSVLPRSDWA--TKLRDGARLEVVTA 61 (65)
T ss_pred CEEEE-CCEEEEcCC-CCcHHHHHHHcC--CCCCcEEEEECCcCcChhHhh--hhcCCCCEEEEEee
Confidence 46777 788888887 899999998875 3456777778887 456 35888889999875
No 109
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=89.55 E-value=1 Score=36.78 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=42.4
Q ss_pred CCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 90 DGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 90 dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
+|+.++.+. ++|+.|+.+.+.-. ...++..|||++.+ -+++|..+.+|+++.+
T Consensus 4 Ng~~~~~~~-~~tv~~ll~~l~~~--~~~v~v~vN~~iv~~~~~~~~~L~~gD~veii~~ 60 (64)
T TIGR01683 4 NGEPVEVED-GLTLAALLESLGLD--PRRVAVAVNGEIVPRSEWDDTILKEGDRIEIVTF 60 (64)
T ss_pred CCeEEEcCC-CCcHHHHHHHcCCC--CCeEEEEECCEEcCHHHcCceecCCCCEEEEEEe
Confidence 788888887 89999999988643 46677789999874 3458888889999875
No 110
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=85.81 E-value=1.7 Score=46.85 Aligned_cols=58 Identities=16% Similarity=0.177 Sum_probs=47.3
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
++|++ ||+.++... ++|+.|+.+.++- ...-++..|||++.+ -+++|.++.+||++.+
T Consensus 1 M~I~V-NGk~~el~e-~~TL~dLL~~L~i--~~~~VAVeVNgeIVpr~~w~~t~LkeGD~IEII~~ 62 (326)
T PRK11840 1 MRIRL-NGEPRQVPA-GLTIAALLAELGL--APKKVAVERNLEIVPRSEYGQVALEEGDELEIVHF 62 (326)
T ss_pred CEEEE-CCEEEecCC-CCcHHHHHHHcCC--CCCeEEEEECCEECCHHHcCccccCCCCEEEEEEE
Confidence 46777 788888877 8999999998754 344556669999998 7779999999999997
No 111
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=85.38 E-value=0.92 Score=47.68 Aligned_cols=32 Identities=22% Similarity=0.194 Sum_probs=27.6
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEec
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR 354 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~ 354 (635)
+++++|++||+|..+. .+++||+|.|++.-..
T Consensus 71 ~vf~i~~~fR~e~~~~----~hl~EF~~le~e~~~~ 102 (269)
T cd00669 71 RVFEINRNFRNEDLRA----RHQPEFTMMDLEMAFA 102 (269)
T ss_pred cEEEEecceeCCCCCC----CcccceeEEEEEEecC
Confidence 8999999999996665 7999999999995443
No 112
>PRK01777 hypothetical protein; Validated
Probab=84.16 E-value=4 Score=36.41 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=40.7
Q ss_pred EEeeccCCCHHHHHhhhcccccc-ce----EEEEEcCEEeeccccccCCCCeEEe---eCCChhHH
Q 006680 94 KEGKRWETSPMDIAQGISKSLAA-NA----LISMVNGVLWDMTRPLEADCDLKLF---TFDSDEGR 151 (635)
Q Consensus 94 ~~~~~~~tTp~diak~is~~~~~-~i----V~AkVNg~l~DL~~pl~~d~~lefl---~f~s~eG~ 151 (635)
.+.+. |+|+.|+++..+-.... .+ ...-|||+..+++++|.....|+++ +.|-.+.+
T Consensus 21 l~vp~-GtTv~dal~~sgi~~~~pei~~~~~~vgI~Gk~v~~d~~L~dGDRVeIyrPL~~DPk~~R 85 (95)
T PRK01777 21 LTLQE-GATVEEAIRASGLLELRTDIDLAKNKVGIYSRPAKLTDVLRDGDRVEIYRPLLADPKELR 85 (95)
T ss_pred EEcCC-CCcHHHHHHHcCCCccCcccccccceEEEeCeECCCCCcCCCCCEEEEecCCCCCHHHHH
Confidence 44555 99999999887632221 12 3556899999999999999999974 45555443
No 113
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=83.72 E-value=3.1 Score=43.30 Aligned_cols=65 Identities=12% Similarity=0.296 Sum_probs=48.5
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHh-CCeEEEEE
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~-G~~~~l~l 384 (635)
..+..|++++++|.+||.+.... ..+.+|+|.+.=+.+..-.. ..+...+..+++.+ |.+.++++
T Consensus 97 ~~~~~p~kif~iG~VyR~D~~D~----th~~~f~Qleg~~~~~~~~f----~~Lk~~l~~l~~~lfG~~~~~r~ 162 (247)
T PF01409_consen 97 KHRPPPIKIFEIGKVYRRDEIDA----THLPEFHQLEGLVVDKNVTF----EDLKGTLEELLKELFGIDVKVRF 162 (247)
T ss_dssp TTSHSSEEEEEEEEEESSSCSBS----SBESEEEEEEEEEEETTE-H----HHHHHHHHHHHHHHHTTTEEEEE
T ss_pred HhcCCCeEEEecCceEecCCccc----ccCccceeEeeEEEecccch----hHHHHHHHHHHHHHhhcccceEe
Confidence 44678999999999999998665 68899999998665543222 23677788888877 99755554
No 114
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=82.00 E-value=1.9 Score=45.64 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=32.6
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHH
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGV 365 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~ 365 (635)
+++++|++||+|.++. .|..||+|.|++.-..+ +.+-+++..+
T Consensus 71 ~v~~i~~~fR~e~~~~----~r~~Ef~~~e~e~~~~~~~dlm~~~e~l 114 (280)
T cd00777 71 RYFQIARCFRDEDLRA----DRQPEFTQIDIEMSFVDQEDIMSLIEGL 114 (280)
T ss_pred cEEEeccceeCCCCCC----CccceeEEeEeeeccCCHHHHHHHHHHH
Confidence 7999999999999987 68889999999965443 2244443333
No 115
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=79.04 E-value=3.9 Score=34.15 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=38.5
Q ss_pred CCCHHHHHhhhccccc------cceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSLA------ANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~~------~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++|+.|+.+.+...++ ...+++-|||+.++++.+|..+.+|.++..
T Consensus 25 ~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~~~~l~~gD~v~i~pp 76 (80)
T cd00754 25 GATVGELLDALEARYPGLLEELLARVRIAVNGEYVRLDTPLKDGDEVAIIPP 76 (80)
T ss_pred CCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCCCcccCCCCEEEEeCC
Confidence 7889999988876542 457788899999999999999999998864
No 116
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.88 E-value=2.6 Score=48.30 Aligned_cols=78 Identities=22% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCCcceeeccccCChhhhhhcccccc-----eEEeeeccccccccCCCCcCceeeceeeecCEE-EEecCchhHHHHH
Q 006680 290 KDRESLQRVYGISYPDKKRLKHAFAELP-----LRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDEVR 363 (635)
Q Consensus 290 p~~~~lqRIyG~~fp~~~~L~esyrelP-----lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~~~~~~~~E~~ 363 (635)
|+.-.+-.+| +.|+.|||++ ++- =|.|++..|||.|.... =|-=||+|-|++ .|+..+.+-+-
T Consensus 182 PSRv~~G~FY--ALPQSPQlfK---QLLMvsGfdRYyQIarCFRDEDlRa----DRQPEFTQiD~EmSF~~~edv~~~-- 250 (585)
T COG0173 182 PSRVHPGKFY--ALPQSPQLFK---QLLMVAGFDRYYQIARCFRDEDLRA----DRQPEFTQIDLEMSFVDEEDVMEL-- 250 (585)
T ss_pred ccccCCCcee--ecCCCHHHHH---HHHHHhcccceeeeeeeeccccccc----ccCCcceeEeEEeecCCHHHHHHH--
Confidence 3444455566 7899998755 332 37899999999998876 588999999999 68776554333
Q ss_pred HHHHHHHHHHHH-hCCe
Q 006680 364 GVLEFIDYAYRI-FGFT 379 (635)
Q Consensus 364 ~~l~~~~~~~~~-~G~~ 379 (635)
+=.++.++++. .|++
T Consensus 251 -~E~l~~~vf~~~~~i~ 266 (585)
T COG0173 251 -IEKLLRYVFKEVKGIE 266 (585)
T ss_pred -HHHHHHHHHHHhcCCc
Confidence 22456666663 3443
No 117
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=75.25 E-value=4.1 Score=34.77 Aligned_cols=51 Identities=16% Similarity=0.146 Sum_probs=40.6
Q ss_pred EEEeeccCCCHHHHHhhhccccccceEEEEE-------cCEEeeccccccCCCCeEEee
Q 006680 93 VKEGKRWETSPMDIAQGISKSLAANALISMV-------NGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 93 ~~~~~~~~tTp~diak~is~~~~~~iV~AkV-------Ng~l~DL~~pl~~d~~lefl~ 144 (635)
.+..+. |+|+.|+|..+.....+....|.| +|+...++++|.....|++++
T Consensus 18 ~liL~~-GaTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~ 75 (75)
T cd01666 18 PVILRR-GSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK 75 (75)
T ss_pred CEEECC-CCCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence 344555 999999999998766666666664 899999999999988888763
No 118
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=74.86 E-value=6.2 Score=32.60 Aligned_cols=46 Identities=13% Similarity=0.263 Sum_probs=39.8
Q ss_pred CCCHHHHHhhhcccccc----ceEEEEEcCEEeec---cccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSLAA----NALISMVNGVLWDM---TRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~~~----~iV~AkVNg~l~DL---~~pl~~d~~lefl~f 145 (635)
++|+.++.+.+...++. ..++..|||++.+. +.+|..+.+|.++..
T Consensus 21 ~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~~~~~~~l~~gD~V~i~pp 73 (77)
T PF02597_consen 21 GSTVRDLLEALAERYPELALRDRVAVAVNGEIVPDDGLDTPLKDGDEVAILPP 73 (77)
T ss_dssp TSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGGGTTTSBEETTEEEEEEES
T ss_pred CCcHHHHHHHHHhhccccccCccEEEEECCEEcCCccCCcCcCCCCEEEEECC
Confidence 88999999999877642 67788899999999 999999999999864
No 119
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=74.24 E-value=6.9 Score=44.38 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=47.4
Q ss_pred cccceEEeeeccccccccC-CCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 006680 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~-g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~l 384 (635)
..+|+|++++|.+||++.. .. ...++|+|.+.=+.+..- --.+ +..++..+++.||++ ++++-
T Consensus 204 ~~~PiRIFsIGRVfRrD~~~Da----THl~eFhQlEGLVVdedV-Sf~D---LKgvLe~LLr~LG~~~vRFRP 268 (533)
T TIGR00470 204 RKLPLKLFSIDRCFRREQREDR----SHLMTYHSASCVVVDEEV-SVDD---GKAVAEGLLAQFGFTKFRFRP 268 (533)
T ss_pred CCCCeEEEeeeeEEecCCCCCC----ccCceeeeEEEEEECCCC-CHHH---HHHHHHHHHHHhCCceEEecc
Confidence 4789999999999999953 43 679999998876665542 2334 778888889999984 55543
No 120
>PRK09350 poxB regulator PoxA; Provisional
Probab=72.66 E-value=2 Score=45.98 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=29.1
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
|++++|++||+|.++. .+..||+|.|++..+.+
T Consensus 80 rvf~i~~~FR~e~~~~----~H~~EFt~lE~y~~~~d 112 (306)
T PRK09350 80 PIFQICKSFRNEEAGR----YHNPEFTMLEWYRPHYD 112 (306)
T ss_pred ceEEecceeecCCCCC----CCCcHHHhhhhhhhCCC
Confidence 9999999999999866 78999999999966553
No 121
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=71.69 E-value=7.1 Score=33.17 Aligned_cols=46 Identities=9% Similarity=0.100 Sum_probs=35.8
Q ss_pred CCCHHHHHhhhcccc---cc--ceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSL---AA--NALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~---~~--~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++|+.++.+.+...+ .. ..++.-|||+..+.+.+|..+.+|.++..
T Consensus 28 ~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 28 GSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTESAALKDGDELAIIPP 78 (82)
T ss_pred CCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCCcCcCCCCEEEEeCC
Confidence 788889888875433 11 34566799999999999999999998763
No 122
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=71.25 E-value=7.6 Score=33.15 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=37.5
Q ss_pred eeccCCCHHHHHhhhccccccc---eEEEEEcCEEeeccccccCCCCeEEee
Q 006680 96 GKRWETSPMDIAQGISKSLAAN---ALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 96 ~~~~~tTp~diak~is~~~~~~---iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
.+. |+|+.|+|..+.....+. ++.++ |++...++++|++...+++++
T Consensus 27 l~~-GaTv~D~A~~IHtdi~~~f~~Ai~~k-~~~~vg~~~~L~dgDvV~Ii~ 76 (76)
T cd01669 27 LPK-GSTARDLAYAIHTDIGDGFLHAIDAR-TGRRVGEDYELKHRDVIKIVS 76 (76)
T ss_pred ECC-CCCHHHHHHHHHHHHHhcceeeEEee-CCEEeCCCcEecCCCEEEEeC
Confidence 344 899999999987766555 34456 999999999999988888874
No 123
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=69.23 E-value=10 Score=43.35 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=47.3
Q ss_pred cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 006680 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (635)
Q Consensus 316 lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~l 384 (635)
.|.+++.+|.+||+|.-.. .-+.+|+|.|.=+.+..-.. . .++.++..+|+.+|+. ++++-
T Consensus 341 ~p~k~fsigrVfR~d~iDa----tH~~eFhQ~EG~vvd~~~t~-~---~L~g~l~~f~~~lg~~~~RfrP 402 (492)
T PLN02853 341 KPKRYFSIDRVFRNEAVDR----THLAEFHQVEGLVCDRGLTL-G---DLIGVLEDFFSRLGMTKLRFKP 402 (492)
T ss_pred CCcEEEeccceecCCCCCc----ccCccceeEEEEEEeCCCCH-H---HHHHHHHHHHHHcCCceEEEec
Confidence 5899999999999998665 78999999998777644222 2 3788899999999983 44433
No 124
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences.
Probab=68.31 E-value=4.6 Score=47.09 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=31.2
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDE 361 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E 361 (635)
=|+|++|++||+|.... .|--||+|.|++.-..+ +.+-+.
T Consensus 207 ervfqI~~~FR~E~~~t----~r~pEFT~le~E~af~d~~dvm~~ 247 (583)
T TIGR00459 207 DRYYQIARCFRDEDLRA----DRQPEFTQIDMEMSFMTQEDVMEL 247 (583)
T ss_pred CcEEEEcceeeCCCCCC----CCCcccCcceeeecCCCHHHHHHH
Confidence 38999999999999887 67899999999954433 334444
No 125
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=67.51 E-value=17 Score=29.51 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=41.1
Q ss_pred EEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 85 ~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
+|++ +|+.+.... ++|++++.+.+.+. .=+..+||-...=+.+|....+|-|+.
T Consensus 2 ~I~v-N~k~~~~~~-~~tl~~lr~~~k~~----~DI~I~NGF~~~~d~~L~e~D~v~~Ik 55 (57)
T PF14453_consen 2 KIKV-NEKEIETEE-NTTLFELRKESKPD----ADIVILNGFPTKEDIELKEGDEVFLIK 55 (57)
T ss_pred EEEE-CCEEEEcCC-CcCHHHHHHhhCCC----CCEEEEcCcccCCccccCCCCEEEEEe
Confidence 5666 787777666 89999999987653 224578998888888888877887764
No 126
>PLN02903 aminoacyl-tRNA ligase
Probab=65.57 E-value=5.8 Score=46.77 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=30.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDE 361 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E 361 (635)
=|+|++|++||+|..+. -|--||+|.|++.-..+ +.+-+.
T Consensus 273 ~RvFqIa~~FR~E~~~t----~RhpEFTqLE~E~sf~d~~dvm~~ 313 (652)
T PLN02903 273 DRYYQIARCFRDEDLRA----DRQPEFTQLDMELAFTPLEDMLKL 313 (652)
T ss_pred CcEEEEehhhccCCCCC----CcccceeeeeeeecCCCHHHHHHH
Confidence 37999999999999887 57799999999954433 334444
No 127
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional
Probab=63.26 E-value=7 Score=46.58 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=31.2
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEE-EEecCchhHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDE 361 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~~~~~~~~E 361 (635)
=|+|++|++||+|.... -|--||+|.|++ .|...+.+-+.
T Consensus 225 ~rvfqI~~~FR~E~~~t----~r~pEFT~LE~E~af~d~~dvm~l 265 (706)
T PRK12820 225 ERYFQLARCFRDEDLRP----NRQPEFTQLDIEASFIDEEFIFEL 265 (706)
T ss_pred CcEEEEechhcCCCCCC----CcCccccccceeeccCCHHHHHHH
Confidence 37999999999999987 577999999999 55433334444
No 128
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=62.02 E-value=11 Score=40.79 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=32.8
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
=++|++|++||+|..+. -..-||+|.|++.-... +.+-+++..++
T Consensus 77 ~~vf~i~~~FR~E~~~~----rHl~EFt~le~e~~~~~~~~~m~~~e~li 122 (329)
T cd00775 77 ERVYEIGRNFRNEGIDL----THNPEFTMIEFYEAYADYNDMMDLTEDLF 122 (329)
T ss_pred CcEEEEeccccCCCCCC----CCCCceEEEEEeeecCCHHHHHHHHHHHH
Confidence 48999999999999876 67899999999854433 22444433333
No 129
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=60.46 E-value=15 Score=39.59 Aligned_cols=50 Identities=18% Similarity=0.261 Sum_probs=34.6
Q ss_pred eEEeeeccccccccC-CCCcCceeeceeeecCEEEEecCc-hhHHHHHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRES-QIKDEVRGVLEFIDY 371 (635)
Q Consensus 318 lrv~~vG~lnR~E~~-g~l~gLiRvREF~Q~d~~if~~~~-~~~~E~~~~l~~~~~ 371 (635)
=++|++|++||+|.+ +. .-..||+|.|++.-..+. .+-+.+..++..+..
T Consensus 94 ~~vf~i~~~FR~E~~~~~----rHl~EFtmLE~e~a~~~~~~lm~~~e~li~~i~~ 145 (335)
T PF00152_consen 94 ERVFEIGPCFRNEESRTR----RHLPEFTMLEWEMAFADYDDLMDLIEELIKYIFK 145 (335)
T ss_dssp SEEEEEEEEE-BSSSCBT----TBSSEEEEEEEEEETSSHHHHHHHHHHHHHHHHH
T ss_pred hhhhheecceeccCcccc----cchhhhhhhhhccccCcHHHhHHHHHHHHHHHHH
Confidence 489999999999998 43 457899999999855443 355554445444433
No 130
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=59.81 E-value=12 Score=42.09 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=31.4
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
=++|++|++||+|..+.- --.-||+|.|++.-..+ +.+-+.+..++
T Consensus 200 ~rVf~i~~~FR~E~~~t~---rHl~EFt~lE~e~a~~~~~dlm~~~e~li 246 (428)
T TIGR00458 200 ERVYEIGPIFRAEEHNTH---RHLNEATSIDIEMAFEDHHDVMDILEELV 246 (428)
T ss_pred CcEEEEecccccCCCCCc---cchheeeEeeeeeccCCHHHHHHHHHHHH
Confidence 389999999999998740 24679999999954433 33444433333
No 131
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=58.64 E-value=15 Score=39.71 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=32.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecCc--hhHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES--QIKDEVRGVLE 367 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~--~~~~E~~~~l~ 367 (635)
=++|++|++||+|.+.. -....||+|.|++..+.++ .+-+++..++.
T Consensus 90 ~~vf~i~~~FR~E~~~~---~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~ 138 (322)
T cd00776 90 ERVYEIGPVFRAEKSNT---RRHLSEFWMLEAEMAFIEDYNEVMDLIEELIK 138 (322)
T ss_pred hhhEEeccccccCCCCc---CCCcceeeccceeeeccCCHHHHHHHHHHHHH
Confidence 47899999999998542 0358999999999776633 34444333433
No 132
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=55.41 E-value=14 Score=43.34 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=30.2
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEV 362 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~ 362 (635)
=|+|++|++||+|.+.. .|--||+|.|++.-..+ +.+-+.+
T Consensus 210 ~rvfqi~~~FR~E~~~~----~r~~EFt~le~e~af~~~~dvm~~~ 251 (588)
T PRK00476 210 DRYYQIARCFRDEDLRA----DRQPEFTQIDIEMSFVTQEDVMALM 251 (588)
T ss_pred CceEEEeceeecCCCCC----CcCcccccceeeecCCCHHHHHHHH
Confidence 38999999999999765 46559999999954443 3344443
No 133
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=52.75 E-value=20 Score=41.13 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=27.7
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEe
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFC 353 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~ 353 (635)
=++|++|++||+|.... -..-||+|.|++.-.
T Consensus 241 ~rVfei~~~FR~E~~~~----rH~pEFt~lE~e~a~ 272 (491)
T PRK00484 241 ERVYEIGRNFRNEGIDT----RHNPEFTMLEFYQAY 272 (491)
T ss_pred CcEEEEecceecCCCCC----CcCCceEEEEEEEec
Confidence 38999999999999876 789999999998443
No 134
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=49.64 E-value=38 Score=28.56 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=35.4
Q ss_pred CCCHHHHHhhhccccc-----cceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLA-----ANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~-----~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++|+.++...+...++ ...+..-||++..+.+.+|..+.+|.++-
T Consensus 26 ~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~~~~l~dgDevai~P 75 (80)
T TIGR01682 26 STTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTDDALLNEGDEVAFIP 75 (80)
T ss_pred CcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCCCcCcCCCCEEEEeC
Confidence 4788888888765543 13466779999999999999998998874
No 135
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=47.88 E-value=42 Score=36.68 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=43.1
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHh-CCeEEEEE
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKL 384 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~-G~~~~l~l 384 (635)
...|++++.+|.+||.+.... ....+|+|.+.=+....- --++ +...+..+++.| |=..++++
T Consensus 182 ~~~Pirif~~G~VyR~D~~Da----tH~~~FhQleglvvd~~v-tf~d---LK~~L~~fl~~~fg~~~~~R~ 245 (339)
T PRK00488 182 QKPPIRIIAPGRVYRNDSDDA----THSPMFHQVEGLVVDKNI-SFAD---LKGTLEDFLKAFFGEDVKIRF 245 (339)
T ss_pred cCCCeEEEEeeeEEEcCCCCc----ccCcceeeEEEEEEeCCC-CHHH---HHHHHHHHHHHHcCCCCeEEe
Confidence 578999999999999997555 789999999877665542 2344 455555555544 62233333
No 136
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=47.18 E-value=2.6e+02 Score=29.34 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=49.7
Q ss_pred ceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCC
Q 006680 342 RRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEG 421 (635)
Q Consensus 342 REF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g 421 (635)
-++...|+++..+.+---+| +++.+..+.+. |-+ .++| .-||+..|-...++. ..|++.|++|++.||
T Consensus 44 L~~~~~~aei~nSa~~tLee---Ii~~m~~a~~~-Gk~-VvRL------hSGDpsiYgA~~EQm-~~L~~~gI~yevvPG 111 (254)
T COG2875 44 LEYCRPDAEIVNSASLTLEE---IIDLMVDAVRE-GKD-VVRL------HSGDPSIYGALAEQM-RELEALGIPYEVVPG 111 (254)
T ss_pred HhhcCCCCEEEecCcCCHHH---HHHHHHHHHHc-CCe-EEEe------ecCChhHHHHHHHHH-HHHHHcCCCeEEeCC
Confidence 34666789999888775556 56666666543 443 3344 248888886544444 468899999999999
Q ss_pred CCccc
Q 006680 422 DGAFY 426 (635)
Q Consensus 422 ~~af~ 426 (635)
--+|.
T Consensus 112 Vss~~ 116 (254)
T COG2875 112 VSSFA 116 (254)
T ss_pred chHHH
Confidence 87664
No 137
>PLN02603 asparaginyl-tRNA synthetase
Probab=46.86 E-value=20 Score=41.78 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.7
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEE-Ee
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FC 353 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~ 353 (635)
=++|++|++||.|.+..- --+.||+|.|+++ |.
T Consensus 322 ~rVy~igp~FRaE~s~T~---RHL~EF~mlE~E~af~ 355 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFA 355 (565)
T ss_pred cceEEEecceeCCCCCCc---cccccceeeeeeeecC
Confidence 369999999999998641 2368999999996 54
No 138
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=46.79 E-value=23 Score=39.86 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=28.8
Q ss_pred EEeeeccccccccCCCCcCcee-eceeeecCEEEEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiR-vREF~Q~d~~if~~~ 355 (635)
|++++|+.||.|.+.. -| +.||+|.|+++-..+
T Consensus 201 rVf~igP~FRAE~s~T----~RHL~EF~~ld~Emaf~~ 234 (435)
T COG0017 201 RVFTIGPTFRAEKSNT----RRHLSEFWMLDPEMAFAD 234 (435)
T ss_pred ceEEecCceecCCCCC----cchhhhHheecceeccCc
Confidence 8999999999999997 55 899999999975544
No 139
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=46.59 E-value=33 Score=37.47 Aligned_cols=60 Identities=15% Similarity=0.210 Sum_probs=44.5
Q ss_pred ceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhC-CeEEEEE
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG-FTYELKL 384 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G-~~~~l~l 384 (635)
|+|+..+|.+||++.... .-.-+|+|.|.=+.... .- +..+..++..+++.|+ .+.++++
T Consensus 192 P~k~~~~grvyR~D~~Da----THs~~FhQiEGlvvd~~-~s---~~~Lkg~L~~f~~~~fg~~~~vRf 252 (335)
T COG0016 192 PIKIFSPGRVYRNDTVDA----THSPEFHQIEGLVVDKN-IS---FADLKGTLEEFAKKFFGEDVKVRF 252 (335)
T ss_pred CceEecccceecCCCCCc----ccchheeeeEEEEEeCC-cc---HHHHHHHHHHHHHHhcCCCcceEe
Confidence 999999999999997666 78999999998554443 22 3337788888888776 4434443
No 140
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=46.20 E-value=7.3 Score=41.66 Aligned_cols=33 Identities=12% Similarity=-0.060 Sum_probs=27.6
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEec
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR 354 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~ 354 (635)
=++|++|++||+|.++. -..-||+|.|++....
T Consensus 74 ~rVfeigp~FRaE~~~~----rHl~EFtmLE~e~~~~ 106 (304)
T TIGR00462 74 GPIFQICKVFRNGERGR----RHNPEFTMLEWYRPGF 106 (304)
T ss_pred CCEEEEcCceeCCCCCC----CcccHHHhHHHHHHcC
Confidence 48999999999999864 5689999999985443
No 141
>COG1854 LuxS LuxS protein involved in autoinducer AI2 synthesis [Signal transduction mechanisms]
Probab=44.88 E-value=78 Score=30.85 Aligned_cols=58 Identities=19% Similarity=0.272 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHh-CC-c-eEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh
Q 006680 153 TFWHSSAHILGQAIEQQY-GC-K-LCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA 213 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lf-g~-~-L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI 213 (635)
.=-||+-||++.-+++.. |. + +-++| ++=-.|||.-+. +.+=+++-++.++..|++++
T Consensus 51 ~~iHTlEHL~A~~iRnh~~g~~~iID~SP-MGCrTGFYm~l~--G~~~~~~i~~~~~~~m~dvl 111 (161)
T COG1854 51 AGIHTLEHLLAGFIRNHLNGNVEIIDISP-MGCRTGFYMILI--GTPTSQDIADVLEATMKDVL 111 (161)
T ss_pred cchhhHHHHHHHHHHhcccCceeEEEecC-cccccceEEEEE--CCCCHHHHHHHHHHHHHHHH
Confidence 347999999999999988 42 2 33343 432269998875 34445566778899998887
No 142
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=44.82 E-value=20 Score=40.64 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=30.7
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
=|+|++|++||+|....- --.-||+|.|++.-..+ +.+-+.+..++
T Consensus 211 ~rVf~i~~~FR~E~~~t~---rHl~EFt~le~e~~~~~~~dvm~~~E~lv 257 (453)
T TIGR00457 211 SKVYTFGPTFRAEKSNTS---RHLSEFWMIEPEMAFANLNDLLQLAETLI 257 (453)
T ss_pred cCceEeeeccccCCCCCC---cCcchhccceeeeecCCHHHHHHHHHHHH
Confidence 378999999999988630 23679999999954333 33444433333
No 143
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=44.81 E-value=24 Score=41.29 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEec
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR 354 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~ 354 (635)
|+|++|++||+|..+. ...-||+|.|++.-..
T Consensus 323 rVfeIgp~FRnE~~~~----rHnpEFTmlE~y~ay~ 354 (585)
T PTZ00417 323 KVYEIGKVFRNEGIDN----THNPEFTSCEFYWAYA 354 (585)
T ss_pred CEEEEcccccCCCCCC----CccceeeeeeeeeecC
Confidence 7999999999999876 6788999999995443
No 144
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=44.15 E-value=71 Score=33.24 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHCCCEEEEeCC
Q 006680 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTT 539 (635)
Q Consensus 484 eR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~------------~~~~~a~~v~~~L~~~G~~v~~d~~ 539 (635)
+.|+.+.++ +.|.||.++|-.. ...+.-..+.+.|+++|++|.+-..
T Consensus 73 ~emi~ia~~---------vkP~~vtLVPEkr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiD 131 (237)
T TIGR00559 73 EEMIRIAEE---------IKPEQVTLVPEARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFID 131 (237)
T ss_pred HHHHHHHHH---------cCCCEEEECCCCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 567777777 4689999999753 3466778889999999999997653
No 145
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=43.54 E-value=99 Score=26.21 Aligned_cols=45 Identities=18% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCCHHHHHhhhccccc-------cceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLA-------ANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~-------~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++|+.++...+...++ ...+..-||+++.+++.+|..+.+|.++-
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~P 76 (81)
T PRK11130 25 FPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_pred CCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEeC
Confidence 5688888777654331 23345668999999999999988888763
No 146
>PLN02502 lysyl-tRNA synthetase
Probab=43.34 E-value=20 Score=41.67 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=30.5
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEE-EEecCchhHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRESQIKDE 361 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~~~~~~~~E 361 (635)
=++|++|++||+|..+. ...-||+|.|++ .|..-+.+-+.
T Consensus 298 ~rVfeIg~~FRnE~~~~----rH~pEFtmlE~y~a~~d~~dlm~~ 338 (553)
T PLN02502 298 ERVYEIGRQFRNEGIST----RHNPEFTTCEFYQAYADYNDMMEL 338 (553)
T ss_pred CCEEEEcCeeeCCCCCC----ccccceeehhhhhhcCCHHHHHHH
Confidence 37999999999998875 679999999998 44432334444
No 147
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=43.29 E-value=28 Score=40.06 Aligned_cols=45 Identities=11% Similarity=0.146 Sum_probs=32.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
=|+|++|++||+|.... -..-||+|.|++.-..+ +.+-+.+..++
T Consensus 253 ~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d~~d~m~l~E~li 298 (505)
T PRK12445 253 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIELTESLF 298 (505)
T ss_pred CcEEEEehhccCCCCCC----CcCcccceeeeeeecCCHHHHHHHHHHHH
Confidence 37999999999998765 67999999999965443 23444433343
No 148
>PLN02221 asparaginyl-tRNA synthetase
Probab=42.92 E-value=26 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=26.8
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEE-EEe
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFC 353 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~ 353 (635)
=|+|++|+.||+|.+..- --+.||+|.|++ .|+
T Consensus 327 ~rVfeIgP~FRAE~s~T~---RHL~EFtmlE~Emaf~ 360 (572)
T PLN02221 327 SSVYTFGPTFRAENSHTS---RHLAEFWMVEPEIAFA 360 (572)
T ss_pred CCeEEEccceecCCCCCC---cccccccceeeeeecC
Confidence 389999999999998531 248999999999 455
No 149
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=41.92 E-value=32 Score=40.84 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=28.8
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
=++|++|++||+|..+. -..-||+|.|++.-..+
T Consensus 302 erVyeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~d 335 (659)
T PTZ00385 302 ERIYEIGKVFRNEDADR----SHNPEFTSCEFYAAYHT 335 (659)
T ss_pred CCEEEEeceecCCCCCC----CccccccceeeeeecCC
Confidence 37999999999999876 67999999999955443
No 150
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=41.60 E-value=27 Score=40.93 Aligned_cols=32 Identities=22% Similarity=0.199 Sum_probs=25.7
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEE
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF 352 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if 352 (635)
=|+|++|++||.|.+..- --+.||+|.|+++-
T Consensus 344 ~rVf~i~p~FRaE~s~t~---RHL~EFt~lE~E~a 375 (586)
T PTZ00425 344 GDVYTFGPTFRAENSHTS---RHLAEFWMIEPEIA 375 (586)
T ss_pred CCEEEEeceEeCCCCCCC---CCCcccceEEEEEe
Confidence 379999999999998631 23679999999964
No 151
>PLN02532 asparagine-tRNA synthetase
Probab=41.35 E-value=24 Score=41.62 Aligned_cols=33 Identities=12% Similarity=0.199 Sum_probs=26.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEE-Ee
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FC 353 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~ 353 (635)
=|+|++|+.||+|.+..- --+.||+|.|+++ |+
T Consensus 390 ~rVYeIgP~FRAE~s~T~---RHL~EFtmlE~Emaf~ 423 (633)
T PLN02532 390 GNVYTFGPRFRADRIDSA---RHLAEMWMVEVEMAFS 423 (633)
T ss_pred CceEEEccceecCCCCCC---cccccccceeeeehhc
Confidence 389999999999998741 2389999999994 44
No 152
>PRK06462 asparagine synthetase A; Reviewed
Probab=41.16 E-value=25 Score=38.22 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=32.6
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
=++|++|++||+|..+.-+ --..-||+|.|++.-+.+ +.+-+.+..++
T Consensus 103 ~rVfeI~p~FR~E~~~~~~-~rHl~EFtmlE~e~~~~d~~dlm~~~e~lv 151 (335)
T PRK06462 103 GKIFYLSPNFRLEPVDKDT-GRHLYEFTQLDIEIEGADLDEVMDLIEDLI 151 (335)
T ss_pred CcEEEEeccccCCCCCCCC-CCCCCchheeeehhhcCCHHHHHHHHHHHH
Confidence 4899999999999986411 135889999999955433 33444433344
No 153
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=41.03 E-value=87 Score=32.55 Aligned_cols=48 Identities=23% Similarity=0.316 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHCCCEEEEeCC
Q 006680 483 VERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTT 539 (635)
Q Consensus 483 veR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~------------~~~~~a~~v~~~L~~~G~~v~~d~~ 539 (635)
-+.|+.+.++ +.|.||.++|-.. ...+.-..+.+.|+++|++|.+-..
T Consensus 72 t~em~~ia~~---------~kP~~vtLVPEkr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiD 131 (234)
T cd00003 72 TEEMLEIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFID 131 (234)
T ss_pred CHHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3667777776 4689999999752 3567788889999999999997654
No 154
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=40.98 E-value=29 Score=39.03 Aligned_cols=46 Identities=20% Similarity=0.420 Sum_probs=32.5
Q ss_pred eEEeeeccccccccCCCCcCcee-eceeeecCEEE-Eec-CchhHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHI-FCR-ESQIKDEVRGVLE 367 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiR-vREF~Q~d~~i-f~~-~~~~~~E~~~~l~ 367 (635)
=++|++|++||+|..+. -| .-||+|.|++. |.. -+.+-+.+.+++.
T Consensus 203 ~rVf~i~~~FR~E~~~t----~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~ 251 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNT----SRHLNEYTSIDVEMGFIDDHEDVMDLLENLLR 251 (437)
T ss_pred CcEEEEeceeeCCCCCC----cccchhhheeeeeeeecccHHHHHHHHHHHHH
Confidence 37999999999999874 23 67999999995 443 2334455444443
No 155
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=39.74 E-value=39 Score=38.21 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=30.4
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
=++|++|++||+|.... =--.-||+|.|++.-..+ +.+-+.+.+++
T Consensus 208 ~rVf~i~~~FR~E~~~t---~rHl~EFt~lE~e~~~~~~~~~m~~~e~li 254 (450)
T PRK03932 208 GKVYTFGPTFRAENSNT---RRHLAEFWMIEPEMAFADLEDNMDLAEEML 254 (450)
T ss_pred CCeEEeeeccccCCCCC---ccccccccccceEEeccCHHHHHHHHHHHH
Confidence 47999999999998732 024679999999954333 33434433333
No 156
>PLN02850 aspartate-tRNA ligase
Probab=39.20 E-value=25 Score=40.73 Aligned_cols=34 Identities=21% Similarity=0.202 Sum_probs=26.7
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEE-EEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAH-IFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~-if~~~ 355 (635)
++|++|++||+|.+..- --+-||+|.|++ -|+..
T Consensus 293 rVfeIgp~FRaE~s~t~---RHl~EFt~Le~Em~~~~~ 327 (530)
T PLN02850 293 RVFEIGPVFRAEDSFTH---RHLCEFTGLDLEMEIKEH 327 (530)
T ss_pred ceEEEecccccCCCCCC---ccchhhccchhhhhhhcC
Confidence 89999999999996421 236899999999 56643
No 157
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=38.20 E-value=28 Score=39.99 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=27.8
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEec
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCR 354 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~ 354 (635)
=|+|++|++||+|.... ...-||+|.|++.-..
T Consensus 241 ~rVfeIg~~FRnE~~~~----rH~pEFTmlE~y~a~~ 273 (496)
T TIGR00499 241 EKVYEIGRNFRNEGVDT----THNPEFTMIEFYQAYA 273 (496)
T ss_pred CceEEEecceecCCCCC----cccchhheeehhhhcC
Confidence 37999999999999875 6789999999985433
No 158
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=37.55 E-value=1.1e+02 Score=31.87 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHCCCEEEEeC
Q 006680 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDT 538 (635)
Q Consensus 484 eR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~------------~~~~~a~~v~~~L~~~G~~v~~d~ 538 (635)
+.|+.+.++ +.|.||.++|-.. ...+.-..+.+.|+++|++|.+-.
T Consensus 76 ~em~~ia~~---------~kP~~vtLVPE~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFi 133 (239)
T PRK05265 76 EEMLDIALE---------VKPHQVTLVPEKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFI 133 (239)
T ss_pred HHHHHHHHH---------CCCCEEEECCCCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 557777776 4689999999752 356778888999999999998765
No 159
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=36.00 E-value=1.4e+02 Score=32.13 Aligned_cols=75 Identities=13% Similarity=0.033 Sum_probs=44.7
Q ss_pred eEEEeCCCcEEEe-eccCCCHHHHHhhhcccc-------------ccceEEEEEcCEE---eeccccccCCCCeEEeeCC
Q 006680 84 IKITLPDGSVKEG-KRWETSPMDIAQGISKSL-------------AANALISMVNGVL---WDMTRPLEADCDLKLFTFD 146 (635)
Q Consensus 84 I~Itl~dg~~~~~-~~~~tTp~diak~is~~~-------------~~~iV~AkVNg~l---~DL~~pl~~d~~lefl~f~ 146 (635)
.+|++ ||+.+++ ++ |+|++|.|+..+... +=++.++.|+|.- -.=.+|+...-.|. .+
T Consensus 69 ~~I~I-DGk~VeV~~~-G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~---T~ 143 (297)
T PTZ00305 69 AIMFV-NKRPVEIIPQ-EENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSII---TD 143 (297)
T ss_pred eEEEE-CCEEEEecCC-CChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEE---eC
Confidence 55566 9999998 66 999999998865321 1145667777752 23344444433332 35
Q ss_pred ChhHHHHHHHHHHHHHH
Q 006680 147 SDEGRDTFWHSSAHILG 163 (635)
Q Consensus 147 s~eG~~vy~hS~ahlL~ 163 (635)
|+.-++.-+..+.+||.
T Consensus 144 Se~v~~~Rk~vLElLLs 160 (297)
T PTZ00305 144 SRLVRDAREGNVELILI 160 (297)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 66555555555555543
No 160
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=34.51 E-value=33 Score=39.91 Aligned_cols=47 Identities=17% Similarity=0.287 Sum_probs=32.1
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEE-EecC-chhHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRE-SQIKDEVRGVLE 367 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~~~-~~~~~E~~~~l~ 367 (635)
=++|++|++||+|.++.- --.-||+|.|++. |+.. ..+-+.+..++.
T Consensus 280 ~rVfeI~p~FRaE~s~T~---RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~ 328 (550)
T PTZ00401 280 PRVFEVGPVFRSENSNTH---RHLTEFVGLDVEMRINEHYYEVLDLAESLFN 328 (550)
T ss_pred CCEEEEeCeEeCCCCCCC---CCccchhhhhhhhHhcCCHHHHHHHHHHHHH
Confidence 379999999999998731 2367999999974 6644 334444434443
No 161
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=34.01 E-value=2.2e+02 Score=25.05 Aligned_cols=85 Identities=13% Similarity=0.255 Sum_probs=57.3
Q ss_pred EEecCC-CcHHHHHHHHHHHHHCCCEEEEeCC-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhh
Q 006680 509 VCPVSE-KSQPYALQVRDHIYRAGYYVDVDTT-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQL 586 (635)
Q Consensus 509 v~p~~~-~~~~~a~~v~~~L~~~G~~v~~d~~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~ 586 (635)
.||.+. .+.-.+..+.+.+.+.|+.+.+... ...+... +...+.
T Consensus 6 ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~----------------------------------l~~~~i 51 (96)
T cd05569 6 ACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENE----------------------------------LTAEDI 51 (96)
T ss_pred ECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCc----------------------------------CCHHHH
Confidence 344443 2334578888899999999999864 3344555 666778
Q ss_pred cCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHH
Q 006680 587 AQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLE 632 (635)
Q Consensus 587 ~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~ 632 (635)
....+++++|+.+..... .....-..+++++.++.-...++
T Consensus 52 ~~Ad~vi~~~~~~~~~~r-----f~gk~v~~~~~~~~l~~~~~vl~ 92 (96)
T cd05569 52 AEADAVILAADVPVDDER-----FAGKRVYEVSVAEAIKDAEAVIE 92 (96)
T ss_pred hhCCEEEEecCCCCchhh-----hCCCeEEEecHHHHHHHHHHHHH
Confidence 889999999998765422 22334566788888776655544
No 162
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=32.93 E-value=1.1e+02 Score=26.11 Aligned_cols=44 Identities=20% Similarity=0.063 Sum_probs=36.5
Q ss_pred CCCHHHHHhhhccccccceEEEEEcC-EEeeccccccCCCCeEEe
Q 006680 100 ETSPMDIAQGISKSLAANALISMVNG-VLWDMTRPLEADCDLKLF 143 (635)
Q Consensus 100 ~tTp~diak~is~~~~~~iV~AkVNg-~l~DL~~pl~~d~~lefl 143 (635)
|+|+.|+|..|.....+...-|.|-| +...+++.|+...-|+++
T Consensus 31 g~tv~d~a~~IH~d~~~~F~~A~v~~~~~vg~d~~l~d~DVv~i~ 75 (76)
T cd04938 31 GTTVGDVARKIHGDLEKGFIEAVGGRRRLEGKDVILGKNDILKFK 75 (76)
T ss_pred CCCHHHHHHHHhHHHHhccEEEEEccCEEECCCEEecCCCEEEEE
Confidence 89999999999888888888888876 788888888776666665
No 163
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=32.40 E-value=76 Score=27.08 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.4
Q ss_pred CCCHHHHHhhhcccccc-------------ceEEEEEcCEEeeccc--cccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLAA-------------NALISMVNGVLWDMTR--PLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~~-------------~iV~AkVNg~l~DL~~--pl~~d~~lefl~ 144 (635)
++|+.++.+.+...++. +.+..-|||+..+-.. +|.++.+|.++.
T Consensus 24 ~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~~~l~dgdev~i~P 83 (88)
T TIGR01687 24 GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLGTELKDGDVVAIFP 83 (88)
T ss_pred CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCCCCCCCCCEEEEeC
Confidence 68899998888755431 2366779999876665 999888888764
No 164
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=31.02 E-value=98 Score=32.27 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHCCCEEEEeCC
Q 006680 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTT 539 (635)
Q Consensus 484 eR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~------------~~~~~a~~v~~~L~~~G~~v~~d~~ 539 (635)
+.|+.+.++ +.|.||.++|-.. ...+.-..+.+.|+++|++|.+-..
T Consensus 74 ~e~~~ia~~---------~kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiD 132 (239)
T PF03740_consen 74 EEMVDIALK---------VKPDQVTLVPEKREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFID 132 (239)
T ss_dssp HHHHHHHHH---------H--SEEEEE--SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-
T ss_pred HHHHHHHHh---------CCcCEEEECCCCCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeC
Confidence 556666666 3588999999652 3467788899999999999987553
No 165
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit. Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.
Probab=27.25 E-value=1.1e+02 Score=32.47 Aligned_cols=56 Identities=18% Similarity=0.257 Sum_probs=38.1
Q ss_pred cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe
Q 006680 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT 379 (635)
Q Consensus 316 lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~ 379 (635)
.|++++++|.+||.+.... .+..||+|.++-+.+.. -- +..+...+..+++.+|++
T Consensus 149 ~pirlFEiGrVfr~d~~d~----~~~pef~ql~gl~~~~~-~~---f~dLKg~le~ll~~l~~~ 204 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTVDA----THLPEFHQVEGLVIDKN-VS---FTNLKGFLEEFLKKMFGE 204 (294)
T ss_pred CCceEEEecceEEcCCCCC----ccCChhhEEEEEEECCC-CC---HHHHHHHHHHHHHHhCCC
Confidence 7899999999999876432 23559998877654421 11 233566677777888875
No 166
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=24.70 E-value=68 Score=27.49 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.2
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhcc
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISK 112 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~ 112 (635)
++|+|++ ||+.+++.+ |.|+.+.+.....
T Consensus 2 ~~v~i~i-dG~~v~~~~-G~til~al~~~gi 30 (82)
T PF13510_consen 2 KMVTITI-DGKPVEVPP-GETILEALLAAGI 30 (82)
T ss_dssp EEEEEEE-TTEEEEEEE-T-BHHHHHHHTT-
T ss_pred CEEEEEE-CCEEEEEcC-CCHHHHHHHHCCC
Confidence 4689999 899999998 9999999987653
No 167
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis]
Probab=24.10 E-value=48 Score=37.90 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=35.7
Q ss_pred ceeeccccCChhhhhh-cccccc-eEEeeeccccccccCCCCcCceeeceeeecCEEEE
Q 006680 296 QRVYGISYPDKKRLKH-AFAELP-LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF 352 (635)
Q Consensus 296 qRIyG~~fp~~~~L~e-syrelP-lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if 352 (635)
-.+| +.|+.|+.++ ..---- =+.|+++.|||.|.... =|-=||+|-|++.=
T Consensus 226 g~FY--aLpQSPQQfKQlLMvsGidrYyQiARCfRDEdlR~----DRQPEFTQvD~EMs 278 (628)
T KOG2411|consen 226 GKFY--ALPQSPQQFKQLLMVSGIDRYYQIARCFRDEDLRA----DRQPEFTQVDMEMS 278 (628)
T ss_pred Ccee--ecCCCHHHHHHHHHHhchhhHHhHHhhhcccccCc----ccCCcceeeeeEEe
Confidence 3455 7777776433 111111 36789999999998876 68899999999953
No 168
>PRK00301 aat leucyl/phenylalanyl-tRNA--protein transferase; Reviewed
Probab=23.94 E-value=79 Score=32.83 Aligned_cols=57 Identities=33% Similarity=0.565 Sum_probs=42.8
Q ss_pred ceee--eHHHHHHHHHHHhCCCCC--------CCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCC
Q 006680 478 AILG--SVERMFAILLEHYKGKWP--------FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT 539 (635)
Q Consensus 478 ai~G--gveR~~~~l~e~~~g~~p--------~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~ 539 (635)
|+.| +.+|++.+-. .|.+| .|-||..=.|+|.++ ......+++.||+..+.|.+|..
T Consensus 25 a~ggdLs~~~Ll~AY~---~GiFPw~~~~~pi~WwsP~pR~Vl~~~~--~hisrsl~k~lr~~~f~itin~a 91 (233)
T PRK00301 25 AVGGDLSPERLLAAYA---QGIFPWFSDGQPILWWSPDPRAVLPPDE--FHISRSLRKTLRKSPFRVTVDTA 91 (233)
T ss_pred eecCCCCHHHHHHHHh---cCcccCCCCCCCceEEcCCCCEEecccc--cccCHHHHHHHcCCCeEEEEccc
Confidence 4444 7899887653 36654 377888888888865 45678899999999999999864
No 169
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=23.40 E-value=69 Score=40.41 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=28.3
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
|+|++|++||+|.... ...-||+|.|++.-..+
T Consensus 840 rVFEIg~~FRnE~~~~----rHnpEFTmLE~y~a~~d 872 (1094)
T PRK02983 840 RVFELGRNFRNEGVDA----THNPEFTLLEAYQAHAD 872 (1094)
T ss_pred ceEEEcceecCCCCCC----CccccccchhhhhhcCC
Confidence 7999999999999875 67899999999965543
No 170
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=22.95 E-value=5.8e+02 Score=23.18 Aligned_cols=87 Identities=22% Similarity=0.307 Sum_probs=57.6
Q ss_pred eEEEEecCC---CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHH
Q 006680 506 QAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVR 582 (635)
Q Consensus 506 qv~v~p~~~---~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 582 (635)
.+.|+|++. ...+|.-++.+.|++.|++-.+... .|-||. -|+|+.+- ++
T Consensus 6 ~~sviP~gt~~~svs~yVa~~i~~lk~~glky~~~pm---------------~T~iEg---~~del~~~---------ik 58 (100)
T COG0011 6 ELSVIPLGTGGPSVSKYVAEAIEILKESGLKYQLGPM---------------GTVIEG---ELDELMEA---------VK 58 (100)
T ss_pred EEEEEecCCCCCCHHHHHHHHHHHHHHcCCceeecCc---------------ceEEEe---cHHHHHHH---------HH
Confidence 577899982 3578999999999999987776654 355565 58888765 66
Q ss_pred HHhhc----CCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 583 EAQLA----QYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 583 ~A~~~----~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
.|+.+ |+|=+. -++.+-.|..+ ..++++-++..++++
T Consensus 59 ~~~Ea~~~~g~~Rv~---------t~ikId~R~d~---~~t~e~Kv~~v~ekl 99 (100)
T COG0011 59 EAHEAVFEKGAPRVS---------TVIKIDERRDK---ELTMEEKVKSVEEKL 99 (100)
T ss_pred HHHHHHHhcCCceEE---------EEEEeeeecCc---cccHHHHHHHHHHhh
Confidence 66655 333222 23445555443 457788777777665
No 171
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Probab=22.33 E-value=1.7e+02 Score=29.45 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=38.6
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG 377 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G 377 (635)
..+++++++|.+||.+..+. .+..||.|.++-+.+.... -.+ +...+..+++.+|
T Consensus 78 ~~~~~lFEiG~Vf~~~~~~~----~~~~E~~~l~~~~~g~~~d-f~d---lkg~ve~ll~~l~ 132 (218)
T cd00496 78 KPPIRIFSIGRVYRNDEIDA----THLPEFHQIEGLVVDKGLT-FAD---LKGTLEEFAKELF 132 (218)
T ss_pred CCCeeEEEEcCeEECCCCCC----CcCCccEEEEEEEECCCCC-HHH---HHHHHHHHHHHhc
Confidence 57899999999998875432 2345999998888774321 233 5566666777787
No 172
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=22.13 E-value=2.8e+02 Score=23.54 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=43.4
Q ss_pred eEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCC-cCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHH
Q 006680 506 QAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRK-IQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREA 584 (635)
Q Consensus 506 qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~-l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A 584 (635)
.|.|..- ......|.++++.|+..||.+ ++..+.. .. +.+.|..++...+. =++|.+-+++-.++.. .
T Consensus 5 ~V~VlNg-t~~~GlA~~~a~~L~~~Gf~v-~~~~n~~~~~--~~t~I~y~~~~~~~----A~~la~~l~~~~~~~~---~ 73 (90)
T PF13399_consen 5 RVEVLNG-TGVSGLAARVADALRNRGFTV-VEVGNAPSSD--ETTTIYYGPGDEAA----ARELAAALGGAEIVVD---P 73 (90)
T ss_pred EEEEEEC-cCCcCHHHHHHHHHHHCCCce-eecCCCCCCC--CCEEEEECCCCHHH----HHHHHHHCCCceEEec---C
Confidence 3444443 345678999999999999988 4443222 22 33444443333211 1233333333333222 1
Q ss_pred hhcCCcEEEEEcccc
Q 006680 585 QLAQYNFILVVGEEE 599 (635)
Q Consensus 585 ~~~~~~~~lvvG~~E 599 (635)
........||+|.+-
T Consensus 74 ~~~~~~v~vvlG~Df 88 (90)
T PF13399_consen 74 DRQDADVVVVLGKDF 88 (90)
T ss_pred CCCCCCEEEEEeCCc
Confidence 455667777887653
No 173
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.30 E-value=2.8e+02 Score=32.44 Aligned_cols=51 Identities=16% Similarity=0.318 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCCCCCCCceEEEEecC--CCcHHHHHHHHHHHHHCCCEEEEeC
Q 006680 486 MFAILLEHYKGKWPFWLSPRQAIVCPVS--EKSQPYALQVRDHIYRAGYYVDVDT 538 (635)
Q Consensus 486 ~~~~l~e~~~g~~p~~lsp~qv~v~p~~--~~~~~~a~~v~~~L~~~G~~v~~d~ 538 (635)
+..-|.+....+|. ..|..+.|++-. +...+.+.++.+.|.+.|+.|.++.
T Consensus 274 l~~~l~~~l~~~w~--~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~ 326 (569)
T PRK14076 274 LHKKLVGIFGNKWR--IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELES 326 (569)
T ss_pred HHHHHHHhhhhhcc--cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 33333333333565 468888888542 4567778899999999999999875
No 174
>PRK02260 S-ribosylhomocysteinase; Provisional
Probab=21.04 E-value=3.2e+02 Score=26.79 Aligned_cols=56 Identities=16% Similarity=0.307 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHh-C-Cc-eEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 154 FWHSSAHILGQAIEQQY-G-CK-LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 154 y~hS~ahlL~~Av~~lf-g-~~-L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
--||+-|+++.-+++.. + .+ +-+|| ++=-.|||.-+. + ..+.++ ++.+++.++.|.
T Consensus 52 alHTlEHL~At~lRn~~~~~~~iI~~sP-MGCrTGFYli~~--g-~~~~~~i~~l~~~~l~~i~ 111 (158)
T PRK02260 52 GIHTLEHLLAGFLRNHLDGGVEIIDISP-MGCRTGFYLILI--G-TPDEEDVADALKATLEDVL 111 (158)
T ss_pred chhHHHHHHHHHHhhCccCCceEEEECC-CccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 37999999999999977 3 33 34454 432268987774 2 344444 666777777664
No 175
>PF02664 LuxS: S-Ribosylhomocysteinase (LuxS); InterPro: IPR003815 In bacteria, the regulation of gene expression in response to changes in cell density is called quorum sensing. Quorum-sensing bacteria produce, release, and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. For example, enteric bacteria use quorum sensing to regulate several traits that allow them to establish and maintain infection in their host, including motility, biofilm formation, and virulence-specific genes []. The LuxS/AI-2 system is one of several quorum sensing mechanisms. AI-2 (autoinducer-2) is a signalling molecule that functions in interspecies communication by regulating niche-specific genes with diverse functions in various bacteria, often in response to population density. LuxS (S-ribosylhomocysteinase; 4.4.1.21 from EC) is an autoinducer-production protein that has a metabolic function as a component of the activated methyl cycle. LuxS converts S-ribosylhomocysteine to homocysteine and 4,5-dihydroxy-2,3-pentanedione (DPD); DPD can then spontaneously cyclise to active AI-2 [, ]. LuxS is a homodimeric iron-dependent metalloenzyme containing two identical tetrahedral metal-binding sites similar to those found in peptidases and amidases []. ; GO: 0005506 iron ion binding, 0009372 quorum sensing; PDB: 1J6X_B 1VGX_A 1INN_B 1VJE_B 1J6V_A 1VH2_A 1J6W_B 1JOE_B 1J98_A 1IE0_A ....
Probab=20.81 E-value=4e+02 Score=26.16 Aligned_cols=58 Identities=16% Similarity=0.305 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCC---c-eEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYGC---K-LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~---~-L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
..--||+-|+++.-+++.... + +-+|| ++=-.|||.-+. | ..+.++ ++.+++.++.|+
T Consensus 49 ~~~lHTlEHL~A~~lRn~~~~~~~~iI~~gP-MGCrTGFYli~~-g--~~~~~~i~~l~~~~l~~i~ 111 (157)
T PF02664_consen 49 TAALHTLEHLFATYLRNHLDGDKDKIIDFGP-MGCRTGFYLILW-G--DPSSEDIADLLKETLEFIL 111 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTEEEEEEEE--TTSSEEEEEEE-S--S--HHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHhcCccCCCCeEEEecC-cccccccEEEEe-C--CCCHHHHHHHHHHHHHHHH
Confidence 445899999999999998842 2 44454 432269988775 2 355555 677888888777
No 176
>PF06301 Lambda_Kil: Bacteriophage lambda Kil protein; InterPro: IPR010444 This family consists of several Bacteriophage lambda Kil protein like sequences. A cessation of division, followed by one or two fairly synchronous cell divisions in Escherichia coli is due to two genetically separable events: a temporary block of cell division and, at the same time, a block to the initiation of new rounds of DNA replication. The cell division block is a result of the transient expression of the lambda kil gene []. The lambda kil gene has been shown to be responsible for premature lysis on the addition of chloramphenicol between 15 and 20 min after thermal induction of a lambda prophage []. Induction of a lambda prophage causes the death of the host cell even in the absence of phage replication and lytic functions due to expression of functions from the lambda p(L) operon. The kil gene causes cell death and filamentation [].
Probab=20.76 E-value=87 Score=24.05 Aligned_cols=24 Identities=42% Similarity=1.013 Sum_probs=18.7
Q ss_pred CcCCChhhHHHHHHHHHHHHHHcCCCc
Q 006680 390 KYLGDLATWEKAEAALTEALNEFGKPW 416 (635)
Q Consensus 390 ~~lg~~~~~~~a~~~l~~~l~~~g~~~ 416 (635)
-|+||.+.|..|.++++.+. |.||
T Consensus 16 ~flGD~~mw~eA~e~~k~ai---~~pw 39 (43)
T PF06301_consen 16 RFLGDEKMWSEANEAMKIAI---GMPW 39 (43)
T ss_pred HHHccHHHHHHHHHHHHHHh---Ccch
Confidence 46899999999988887764 4555
Done!