Query 006680
Match_columns 635
No_of_seqs 411 out of 2943
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 06:05:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qf6_A THRRS, threonyl-tRNA sy 100.0 3E-109 9E-114 947.0 43.3 513 83-634 1-635 (642)
2 1nyr_A Threonyl-tRNA synthetas 100.0 6E-106 2E-110 920.3 39.2 515 82-635 2-643 (645)
3 3uh0_A Threonyl-tRNA synthetas 100.0 1.9E-62 6.5E-67 540.6 19.4 289 312-635 144-460 (460)
4 1tke_A Threonyl-tRNA synthetas 100.0 4.5E-54 1.5E-58 432.3 21.7 218 83-304 1-224 (224)
5 1evl_A Threonyl-tRNA synthetas 100.0 9.4E-52 3.2E-56 447.7 22.3 289 311-634 105-394 (401)
6 3a32_A Probable threonyl-tRNA 100.0 6.7E-47 2.3E-51 418.2 13.0 287 311-633 124-448 (471)
7 4hvc_A Bifunctional glutamate/ 100.0 1.6E-40 5.3E-45 370.0 14.4 254 311-633 142-414 (519)
8 3ial_A Prolyl-tRNA synthetase; 100.0 5.6E-41 1.9E-45 373.1 9.3 242 311-623 136-398 (518)
9 1hc7_A Prolyl-tRNA synthetase; 100.0 2.8E-38 9.4E-43 349.8 13.8 250 311-633 125-387 (477)
10 2zt5_A Glycyl-tRNA synthetase; 100.0 1.4E-37 4.8E-42 357.0 15.8 290 307-634 255-659 (693)
11 1nj8_A Proline-tRNA synthetase 100.0 1.7E-37 5.8E-42 342.1 12.5 251 311-633 119-381 (459)
12 2j3l_A Prolyl-tRNA synthetase; 100.0 2E-36 6.8E-41 341.5 19.6 274 311-633 123-566 (572)
13 1nj1_A PROR, proline-tRNA synt 100.0 4.8E-37 1.7E-41 341.7 12.0 251 311-633 151-414 (501)
14 1ati_A Glycyl-tRNA synthetase; 100.0 1.9E-36 6.6E-41 337.2 15.0 274 307-631 198-503 (505)
15 1g5h_A Mitochondrial DNA polym 100.0 4.8E-37 1.6E-41 337.8 9.2 262 303-633 148-439 (454)
16 3ikl_A DNA polymerase subunit 100.0 3.5E-36 1.2E-40 329.0 15.2 259 307-633 162-449 (459)
17 4e51_A Histidine--tRNA ligase; 100.0 5.6E-36 1.9E-40 330.7 16.4 263 312-631 126-458 (467)
18 1h4v_B Histidyl-tRNA synthetas 100.0 1.6E-33 5.6E-38 306.0 23.1 269 312-631 96-420 (421)
19 2i4l_A Proline-tRNA ligase; al 100.0 8.7E-36 3E-40 328.3 5.2 273 311-627 143-457 (458)
20 1wu7_A Histidyl-tRNA synthetas 100.0 1.8E-34 6E-39 315.3 15.3 264 315-631 97-425 (434)
21 1htt_A Histidyl-tRNA synthetas 100.0 1.6E-33 5.5E-38 306.3 19.3 270 312-631 96-422 (423)
22 1qe0_A Histidyl-tRNA synthetas 100.0 2E-34 7E-39 312.8 10.5 262 312-628 95-419 (420)
23 3net_A Histidyl-tRNA synthetas 100.0 1.3E-32 4.6E-37 303.5 15.2 273 313-631 116-464 (465)
24 4g85_A Histidine-tRNA ligase, 100.0 4.9E-31 1.7E-35 294.4 15.8 274 312-632 152-514 (517)
25 4g84_A Histidine--tRNA ligase, 100.0 1.2E-29 4.3E-34 278.4 16.3 274 312-632 99-461 (464)
26 3lc0_A Histidyl-tRNA synthetas 99.9 4.8E-28 1.7E-32 266.6 12.6 259 313-623 119-446 (456)
27 1v4p_A Alanyl-tRNA synthetase; 99.9 7.7E-27 2.6E-31 221.6 15.3 136 149-295 2-144 (157)
28 2ztg_A Alanyl-tRNA synthetase; 99.8 1.8E-19 6.3E-24 206.2 16.1 127 151-283 595-724 (739)
29 3kew_A DHHA1 domain protein; s 99.8 2.5E-19 8.6E-24 181.8 13.1 148 123-283 64-216 (241)
30 2dq3_A Seryl-tRNA synthetase; 99.8 1.6E-20 5.5E-25 204.9 2.6 161 312-511 246-423 (425)
31 2dq0_A Seryl-tRNA synthetase; 99.7 4.5E-19 1.5E-23 194.9 5.2 159 312-506 267-438 (455)
32 1v95_A Nuclear receptor coacti 99.7 3E-18 1E-22 157.6 7.8 97 503-633 7-107 (130)
33 2zze_A Alanyl-tRNA synthetase; 99.7 1.6E-17 5.5E-22 190.3 15.6 125 152-283 609-738 (752)
34 2e1b_A PH0108, 216AA long hypo 99.7 1.6E-17 5.3E-22 166.0 13.5 120 133-283 76-203 (216)
35 3od1_A ATP phosphoribosyltrans 99.7 6.6E-17 2.2E-21 175.3 15.4 233 313-603 99-397 (400)
36 1wwt_A Threonyl-tRNA synthetas 99.7 4.3E-18 1.5E-22 146.4 1.0 82 78-159 6-87 (88)
37 1ses_A Seryl-tRNA synthetase; 99.6 3.1E-17 1E-21 178.9 3.3 155 312-506 240-412 (421)
38 1wle_A Seryl-tRNA synthetase; 99.6 2.1E-16 7E-21 175.3 5.1 159 312-510 297-473 (501)
39 3lss_A Seryl-tRNA synthetase; 99.3 1.8E-12 6.2E-17 142.8 8.6 165 312-515 284-472 (484)
40 3qne_A Seryl-tRNA synthetase, 99.3 9E-13 3.1E-17 145.2 3.2 165 313-514 264-446 (485)
41 3err_A Fusion protein of micro 99.3 1.8E-12 6.1E-17 145.0 5.6 73 312-384 349-426 (536)
42 2cja_A Seryl-tRNA synthetase; 99.3 5.8E-13 2E-17 148.3 1.3 71 312-384 339-411 (522)
43 3vbb_A Seryl-tRNA synthetase, 99.3 3E-12 1E-16 142.0 6.8 165 312-514 286-472 (522)
44 3rac_A Histidine-tRNA ligase; 99.2 6.9E-12 2.4E-16 134.7 5.8 72 314-388 114-190 (373)
45 1usy_A ATP phosphoribosyltrans 99.2 1.1E-11 3.7E-16 127.9 5.3 89 313-413 65-158 (275)
46 2kmm_A Guanosine-3',5'-BIS(dip 99.1 1.7E-10 5.9E-15 94.9 7.1 66 83-149 2-67 (73)
47 3mf2_A BLL0957 protein; aminoa 99.1 1.9E-10 6.4E-15 121.4 9.1 70 315-387 166-235 (346)
48 3hvz_A Uncharacterized protein 98.8 5.6E-09 1.9E-13 88.0 7.2 67 82-149 6-72 (78)
49 1z7m_A ATP phosphoribosyltrans 98.8 3.1E-09 1.1E-13 112.9 6.3 68 313-387 113-182 (344)
50 3dsq_A Pyrrolysyl-tRNA synthet 97.6 7.8E-05 2.7E-09 77.2 6.9 64 314-384 146-211 (288)
51 3qtc_A Pyrrolysyl-tRNA synthet 96.0 0.0084 2.9E-07 61.7 6.5 61 314-382 152-212 (290)
52 1tyg_B YJBS; alpha beta barrel 94.7 0.041 1.4E-06 47.0 5.4 61 81-145 18-83 (87)
53 1f0z_A THis protein; ubiquitin 93.8 0.09 3.1E-06 42.0 5.4 57 85-145 2-62 (66)
54 1ryj_A Unknown; beta/alpha pro 93.6 0.11 3.8E-06 42.1 5.7 59 83-145 4-66 (70)
55 2l32_A Small archaeal modifier 93.1 0.076 2.6E-06 43.8 3.9 59 83-146 2-63 (74)
56 2k5p_A THis protein, thiamine- 92.8 0.1 3.6E-06 43.4 4.4 59 84-145 1-65 (78)
57 2cu3_A Unknown function protei 92.8 0.24 8.1E-06 39.3 6.4 55 86-145 2-60 (64)
58 2kl0_A Putative thiamin biosyn 92.6 0.11 3.7E-06 42.7 4.3 57 85-146 2-62 (73)
59 1nnh_A Asparaginyl-tRNA synthe 91.1 0.16 5.5E-06 52.4 4.6 37 317-355 88-125 (294)
60 1n9w_A Aspartyl-tRNA synthetas 88.4 0.36 1.2E-05 52.4 4.8 36 317-356 190-226 (422)
61 1x54_A Asparaginyl-tRNA synthe 87.9 0.45 1.5E-05 51.8 5.2 35 317-355 200-235 (434)
62 1eov_A ASPRS, aspartyl-tRNA sy 87.0 0.47 1.6E-05 52.4 4.7 47 317-367 244-293 (487)
63 1wyd_A Hypothetical aspartyl-t 86.6 0.59 2E-05 50.8 5.2 35 317-355 199-234 (429)
64 3a74_A Lysyl-tRNA synthetase; 84.0 0.9 3.1E-05 50.3 5.1 35 317-355 242-276 (493)
65 1rws_A Hypothetical protein PF 83.9 0.66 2.3E-05 38.1 3.1 53 90-145 21-73 (77)
66 3a5y_A GENX, putative lysyl-tR 81.1 1 3.6E-05 47.5 4.1 46 319-368 111-157 (345)
67 1e1o_A Lysyl-tRNA synthetase, 80.1 1.7 5.8E-05 48.2 5.5 34 318-355 252-285 (504)
68 2eki_A DRG 1, developmentally- 80.0 4.4 0.00015 34.8 6.9 53 94-146 29-88 (93)
69 1vjk_A Molybdopterin convertin 77.5 2 6.7E-05 36.7 4.0 46 100-145 36-94 (98)
70 3l4g_A Phenylalanyl-tRNA synth 76.0 3.7 0.00013 45.5 6.7 66 315-388 345-411 (508)
71 2du3_A O-phosphoseryl-tRNA syn 71.1 7.4 0.00025 43.4 7.6 63 314-384 202-266 (534)
72 2g1e_A Hypothetical protein TA 69.2 7.6 0.00026 32.0 5.6 46 100-145 24-86 (90)
73 1fm0_D Molybdopterin convertin 68.8 12 0.00042 30.1 6.7 46 100-145 25-77 (81)
74 4ah6_A Aspartate--tRNA ligase, 65.2 5.1 0.00017 45.5 4.8 33 319-355 218-250 (617)
75 2q5w_D Molybdopterin convertin 63.8 5.1 0.00017 32.1 3.3 46 100-145 25-73 (77)
76 3po0_A Small archaeal modifier 63.1 7.6 0.00026 32.1 4.4 45 100-144 27-84 (89)
77 2hj1_A Hypothetical protein; s 62.2 6 0.0002 34.2 3.6 58 94-152 30-92 (97)
78 2xgt_A Asparaginyl-tRNA synthe 59.0 7.6 0.00026 42.1 4.6 47 318-368 198-246 (435)
79 3bju_A Lysyl-tRNA synthetase; 56.6 9.4 0.00032 42.4 4.9 33 319-355 246-278 (521)
80 1l0w_A Aspartyl-tRNA synthetas 56.0 10 0.00035 42.6 5.2 44 319-366 214-258 (580)
81 1c0a_A Aspartyl tRNA synthetas 55.8 10 0.00034 42.8 5.0 45 319-367 208-253 (585)
82 4ex5_A Lysine--tRNA ligase; st 55.3 10 0.00035 42.2 4.9 34 318-355 273-306 (529)
83 3nem_A Aspartyl-tRNA synthetas 54.9 12 0.0004 40.7 5.2 48 318-369 204-254 (438)
84 3dwg_C 9.5 kDa culture filtrat 51.4 20 0.00068 29.8 5.1 45 100-144 25-88 (93)
85 2l52_A Methanosarcina acetivor 45.5 31 0.001 29.3 5.4 46 100-145 27-95 (99)
86 3i7f_A Aspartyl-tRNA synthetas 42.9 21 0.00071 39.9 4.9 48 318-368 311-360 (548)
87 3rpf_C Molybdopterin convertin 41.2 23 0.0008 28.2 3.7 45 100-144 20-69 (74)
88 3m4p_A Ehasnrs, asparaginyl-tR 40.6 22 0.00076 38.7 4.6 47 318-367 222-269 (456)
89 1j6x_A Autoinducer-2 productio 39.8 82 0.0028 29.5 7.6 58 152-213 51-109 (160)
90 1b7y_A Phers, protein (phenyla 39.0 64 0.0022 33.8 7.7 58 314-379 190-248 (350)
91 3gk0_A PNP synthase, pyridoxin 36.6 60 0.0021 33.0 6.6 47 483-538 104-162 (278)
92 1vje_A Autoinducer-2 productio 34.2 1.1E+02 0.0037 28.9 7.5 58 152-213 53-111 (166)
93 1m5w_A Pyridoxal phosphate bio 33.9 66 0.0023 32.1 6.4 47 484-539 77-135 (243)
94 1wxq_A GTP-binding protein; st 30.1 22 0.00075 37.8 2.4 52 93-145 342-395 (397)
95 2rhq_A Phenylalanyl-tRNA synth 28.8 76 0.0026 32.2 6.1 57 315-379 130-187 (294)
96 3o6c_A PNP synthase, pyridoxin 28.5 49 0.0017 33.4 4.4 48 483-539 75-132 (260)
97 3pco_A Phenylalanyl-tRNA synth 27.9 83 0.0028 32.7 6.2 64 314-385 181-246 (327)
98 1lxj_A YBL001C, hypothetical 1 27.5 2.4E+02 0.0083 24.2 8.2 92 505-631 8-102 (104)
99 1j98_A Autoinducer-2 productio 26.9 1.6E+02 0.0055 27.4 7.3 58 152-213 50-113 (157)
100 1v8c_A MOAD related protein; r 24.7 52 0.0018 30.9 3.6 44 101-144 23-82 (168)
101 1j6w_A Autoinducer-2 productio 23.4 1.9E+02 0.0064 27.5 7.1 58 152-213 50-112 (175)
102 2qjl_A URM1, ubiquitin-related 21.9 1.1E+02 0.0038 25.6 4.9 45 100-144 31-94 (99)
103 2du7_A O-phosphoseryl-tRNA syn 20.4 1.1E+02 0.0036 34.3 5.5 57 314-378 214-271 (549)
No 1
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1
Probab=100.00 E-value=2.7e-109 Score=946.95 Aligned_cols=513 Identities=41% Similarity=0.741 Sum_probs=493.6
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHH
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahlL 162 (635)
+|+||+|||++++++. +|||+|||++|++++++.+++|+|||++|||++||+.||+|++++|+|++|++++|||++|||
T Consensus 1 ~~~~~~~d~~~~~~~~-~~t~~~~a~~i~~~~~~~~~~~~vng~~~dl~~~l~~d~~~~~~~~~~~~~~~~~~HSa~HlL 79 (642)
T 1qf6_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (642)
T ss_dssp -CEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCSEEEETTEEEETTSCBCSCEECCEECTTSHHHHHHHHHHHHHHH
T ss_pred CceEEcCCCCeEEecC-CCCHHHHHHHhchhhhhheEEEEECCEEeccccccCCCceEEEeecCcHHHHHHHHHHHHHHH
Confidence 3899999999999886 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhc--Ccch
Q 006680 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (635)
Q Consensus 163 ~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~--~~~K 237 (635)
++|++++| ++++++||+++ +||||||++ +.++|++|+++||++|+++| |+||++.++++++|+++|+. ++||
T Consensus 80 ~~Al~~~~~~~~~~~G~~i~--~gfy~Df~~-~~~~t~edl~~IE~~m~~iI~~~~~v~~~~~~~~eA~~~~~~~~e~yk 156 (642)
T 1qf6_A 80 GHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156 (642)
T ss_dssp HHHHHHHCTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEECCHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCcEEEECCccC--CeeEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEecHHHHHHHhhhhCCcch
Confidence 99999999 67999999999 999999997 56899999999999999999 99999999999999999987 7899
Q ss_pred hhhc-ccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhhhh-----
Q 006680 238 VEII-NDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH----- 311 (635)
Q Consensus 238 ~~LL-~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e----- 311 (635)
++|+ +.+|.++.|++|+||+|+|+|+||||||||+|+.|+|++.+++||+++.++..+||+||++||+++.|.+
T Consensus 157 ~~li~~~~~~~~~v~vy~~g~~~dlC~GpHv~~Tg~I~~fkl~~~~~~yw~g~~~~~~l~r~~g~~~~~~~~l~~~~~~~ 236 (642)
T 1qf6_A 157 VSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWADKKALNAYLQRL 236 (642)
T ss_dssp HHHHHHHSCTTCCCEEEEETTEEECCSSCCCSBGGGCCSEEEEEEEEEEGGGCTTSCEEEEEEEEECSSHHHHHHHHHHH
T ss_pred hhhhhcccCCCCceEEEEECCEEEecCCCccCCCCcceeEEEeeeccccccCccCCceeEeeeccccCchhHHhhhhhhh
Confidence 9999 8787667899999999999999999999999999999999999999999999999999999999997731
Q ss_pred --------------------------------------------------------------------------------
Q 006680 312 -------------------------------------------------------------------------------- 311 (635)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (635)
T Consensus 237 eea~~rdH~~lg~~l~l~~~~~~~~G~~~~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~ 316 (642)
T 1qf6_A 237 EEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDA 316 (642)
T ss_dssp HHHHTTCHHHHHHHTTCEECCTTSTTCCEECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGG
T ss_pred hccccCCHHHHHHhcCccccccCCCCcEEECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccc
Confidence
Q ss_pred ------------------------------cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHH
Q 006680 312 ------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDE 361 (635)
Q Consensus 312 ------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E 361 (635)
+|+++|+|++++|.+||+|.+|...||+|+|||+|+|+|+||+++++++|
T Consensus 317 my~~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~~~~~~e 396 (642)
T 1qf6_A 317 MFTTSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDE 396 (642)
T ss_dssp CEEEEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHH
T ss_pred ceeeecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCHHHHHHH
Confidence 78899999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCC-eEEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhh
Q 006680 362 VRGVLEFIDYAYRIFGF-TYELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR 440 (635)
Q Consensus 362 ~~~~l~~~~~~~~~~G~-~~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r 440 (635)
+..+++++.++|+.||| +|.+.++++|+++.|+.+.|+.|+..+.++|+..|++|++++|+|+|||||+|+.+.|++|+
T Consensus 397 ~~~~i~~~~~i~~~lGl~~~~v~l~~~~e~~~g~~e~w~~a~~~l~~~l~~~g~~~~~~~g~~afygpk~d~~~~d~~G~ 476 (642)
T 1qf6_A 397 VNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDR 476 (642)
T ss_dssp HHHHHHHHHHHHGGGTCCCCEEEEECCCSSCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHHHcCCCcEEcCCCcccccCcccEEEEccCCc
Confidence 99999999999999999 59999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHH
Q 006680 441 KFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYA 520 (635)
Q Consensus 441 ~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a 520 (635)
.|+|+|+|+||++|.|||+.|.+.+ |+..+|+|+|||++||+||++++|+|+++|.||.|++|.||+|+|++++..+||
T Consensus 477 ~~~~gti~~df~l~~r~~~~y~~~~-g~~~~P~~~hrai~G~ieR~i~~liE~~~~~~P~~laP~qv~vipi~~~~~~~a 555 (642)
T 1qf6_A 477 AWQCGTVQLDFSLPSRLSASYVGED-NERKVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYV 555 (642)
T ss_dssp EEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHHHHHHH
T ss_pred eEEeeeEEEeccCCccCCCEEEecC-CCCcCcEEEEeccCCCHHHHHHHHHHHhcCCCCcccCCceEEEEEeCHHHHHHH
Confidence 9999999999999999999998876 667789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEccccc
Q 006680 521 LQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEA 600 (635)
Q Consensus 521 ~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~ 600 (635)
.+|++.|+++|++|++|+++.++++| ||+|++.|+||+||||++|+
T Consensus 556 ~~v~~~L~~~Gi~v~~D~~~~~~g~k----------------------------------ir~a~~~g~p~~ivvG~~E~ 601 (642)
T 1qf6_A 556 NELTQKLSNAGIRVKADLRNEKIGFK----------------------------------IREHTLRRVPYMLVCGDKEV 601 (642)
T ss_dssp HHHHHHHHTTTCCEEEECCSSCHHHH----------------------------------HHHHHHTTCSEEEEECTTTG
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHH----------------------------------HHHHHHcCCCEEEEECchhh
Confidence 99999999999999999999999999 99999999999999999999
Q ss_pred ccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 601 KSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 601 ~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
++|+|+||+|+++++..|+++++++.++++++++
T Consensus 602 ~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~ 635 (642)
T 1qf6_A 602 ESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 635 (642)
T ss_dssp GGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTT
T ss_pred hcCeEEEEECCCCceEEEEHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999988776
No 2
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*
Probab=100.00 E-value=6.4e-106 Score=920.31 Aligned_cols=515 Identities=39% Similarity=0.723 Sum_probs=491.6
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHH
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHI 161 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahl 161 (635)
.+|+|++|||++++++. |||++|||+++++++++.+|+|+|||++|||++||+.||+|+|++++|++|+++||||++||
T Consensus 2 ~~~~i~~~dg~~~~~~~-g~t~~~ia~~~~~~~~~~~v~~~vng~~~dl~~~l~~d~~v~~~~~~~~~g~~~~~HSa~Hl 80 (645)
T 1nyr_A 2 EQINIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIVTPGSEEALEVLRHSTAHL 80 (645)
T ss_dssp --CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEECTTSHHHHHHHHHHHHHH
T ss_pred CceEEEeCCCCEEEecC-CCCHHHHHHHhhhhcccCeEEEEECCEEEeCCcccCCCCeEEEeeccchhHHHHHHHHHHHH
Confidence 46899999999988886 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchh
Q 006680 162 LGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKV 238 (635)
Q Consensus 162 L~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~ 238 (635)
|++|++++| +..+++||+++ +||||||.. +.++|++|+++||++|+++| |+||++.+++++||+++|++++||+
T Consensus 81 L~~A~~~~~~~~~~~~g~~~~--~g~~~Df~~-~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~yk~ 157 (645)
T 1nyr_A 81 MAHAIKRLYGNVKFGVGPVIE--GGFYYDFDI-DQNISSDDFEQIEKTMKQIVNENMKIERKVVSRDEAKELFSNDEYKL 157 (645)
T ss_dssp HHHHHHHHSSSCEECCCCEET--TEEEEEEEC-SSCCCSTTHHHHHHHHHHHHHTTCCEEEEECTTTHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCcEEEECCccC--CceEEEecC-CCCCCHHHHHHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhhCcchH
Confidence 999999999 67899999998 999999987 56899999999999999999 9999999999999999999888999
Q ss_pred hhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccCChhhhhh-------
Q 006680 239 EIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYPDKKRLKH------- 311 (635)
Q Consensus 239 ~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp~~~~L~e------- 311 (635)
+|++.+|.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||++..+++.+|||||++|+++++|.+
T Consensus 158 ~li~~~~~~~~vrv~~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~a~~~~~~~~~~l~ri~g~~~~~~~~l~~~~~~l~e 237 (645)
T 1nyr_A 158 ELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYGTAFFDKKELKAHLQMLEE 237 (645)
T ss_dssp HHHCCCSSSCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred HHhhcCCCCCeeEEEEECCEEEecCCcccCCCCCCceEEEeeeCchHHHHHhHHHHHHHHHHHhcCCHHHhhhhhhhhhh
Confidence 9999987667899999999999999999999999999999999999999999999999999999999888743
Q ss_pred --------------------------------------------------------------------------------
Q 006680 312 -------------------------------------------------------------------------------- 311 (635)
Q Consensus 312 -------------------------------------------------------------------------------- 311 (635)
T Consensus 238 a~~rdhr~lg~~l~l~~~~~~~~~G~~~~lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~m 317 (645)
T 1nyr_A 238 RKERDHRKIGKELELFTNSQLVGAGLPLWLPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDM 317 (645)
T ss_dssp HHHTCHHHHHHHTTCEEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSS
T ss_pred hhhhhHHHHhhhcceEEecccCCCceeEECCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCc
Confidence
Q ss_pred -------------------------------cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHH
Q 006680 312 -------------------------------AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKD 360 (635)
Q Consensus 312 -------------------------------syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~ 360 (635)
+|+++|+|++++|.+||+|.+|...||+|+|||+|+|+|+||+++++.+
T Consensus 318 f~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~~~~~d 397 (645)
T 1nyr_A 318 FPPMQLDETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKE 397 (645)
T ss_dssp CCCEEETTTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHH
T ss_pred ceeEecCCCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCHHHHHH
Confidence 6889999999999999999999889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhCC-eEEEEEccCC----CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHH
Q 006680 361 EVRGVLEFIDYAYRIFGF-TYELKLSTRP----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVS 435 (635)
Q Consensus 361 E~~~~l~~~~~~~~~~G~-~~~l~ls~r~----~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~ 435 (635)
|+..++.++.++|+.||| +|.+++|++| ++++|+.+.|++++..|.++|+..|.+|.+++|+++||||++++.+.
T Consensus 398 ~~~e~i~~~~~~l~~lGl~~~~~~l~~~~~~~~e~~~g~~e~~~~~~~~l~~~l~~~g~~~~~~~~~~~~ygpki~~~~~ 477 (645)
T 1nyr_A 398 EFKRVVNMIIDVYKDFGFEDYSFRLSYRDPEDKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVK 477 (645)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEEEEECCCCCSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEeCCCcccchhhcCChHHHHHHHHHHHHHHHHcCCCeEecCCCCceeCCccceehh
Confidence 888899999999999999 5999999998 78999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecC-C
Q 006680 436 DALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS-E 514 (635)
Q Consensus 436 d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~-~ 514 (635)
|++++.|+|+|+|+||++|.+||+.|.+.+ |+..+|+|||||++||+||++++|+|+++|.||.|++|.||+|+|++ +
T Consensus 478 d~lg~~~~~gtiq~D~~l~~~~d~~Y~~~~-g~~~~P~~ih~~~~GgieR~i~~liE~~~~~~P~~lap~qv~vip~~~~ 556 (645)
T 1nyr_A 478 TAMGKEETLSTAQLDFLLPERFDLTYIGQD-GEHHRPVVIHRGVVSTMERFVAFLTEETKGAFPTWLAPKQVQIIPVNVD 556 (645)
T ss_dssp CTTSCCEEEEEEEEESSHHHHTTCCEECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSHH
T ss_pred hhhCchhhcceEEeecccccccceEEECCC-CCccCcEEEEeccCCcHHHHHHHHHHHhcCCCCCCCCCceEEEEEcccH
Confidence 999999999999999999999998886665 77789999999999999999999999999999999999999999999 8
Q ss_pred CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEE
Q 006680 515 KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILV 594 (635)
Q Consensus 515 ~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lv 594 (635)
+..+||.+|++.|+++|++|++|++++++++| +++|++.|+||++|
T Consensus 557 ~~~~~a~~i~~~Lr~~Gi~v~~D~~~~~~g~k----------------------------------~~~a~~~g~p~~ii 602 (645)
T 1nyr_A 557 LHYDYARQLQDELKSQGVRVSIDDRNEKMGYK----------------------------------IREAQMQKIPYQIV 602 (645)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEECCSSCCHHHH----------------------------------HHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCCCHHHH----------------------------------HHHHHhcCCCEEEE
Confidence 89999999999999999999999999999999 99999999999999
Q ss_pred EcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhcC
Q 006680 595 VGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 595 vG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~~ 635 (635)
||++|+++|+|+||+|+++++..|+++++++.+++.+++|.
T Consensus 603 vG~~e~~~~~V~vr~r~~~~~~~v~~~e~~~~l~~~~~~~~ 643 (645)
T 1nyr_A 603 VGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKK 643 (645)
T ss_dssp ECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHHTTC
T ss_pred EccchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999888763
No 3
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Probab=100.00 E-value=1.9e-62 Score=540.63 Aligned_cols=289 Identities=45% Similarity=0.895 Sum_probs=281.2
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHH-HHhCCe---------EE
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAY-RIFGFT---------YE 381 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~-~~~G~~---------~~ 381 (635)
+|+++|+|++++|.+||+|.++...||+|+|||+|+|+|+||+++++++|+..+++++.++| +.|||+ +.
T Consensus 144 s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~~~~~~ 223 (460)
T 3uh0_A 144 SYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTPSQVKSEIFNSLKLIDIVYNKIFPFVKGGSGAESNYF 223 (460)
T ss_dssp BGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHTTTSCCC-----CCSSCE
T ss_pred cccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccceE
Confidence 78999999999999999999998899999999999999999999999999999999999999 999997 99
Q ss_pred EEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEE
Q 006680 382 LKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGY 461 (635)
Q Consensus 382 l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y 461 (635)
+.++|||++|+|+.++|++|+.+|+++|++.|.+|.+|+|+|+|||||||+.+.|++|+.|||+|+||||++|.+|++.|
T Consensus 224 ~~l~t~pe~~~G~~~~w~~ae~~L~~~l~~~g~~~~~~~g~gafygpkid~~~~d~~gr~~q~~Tiqld~~~~~rf~l~y 303 (460)
T 3uh0_A 224 INFSTRPDHFIGDLKVWNHAEQVLKEILEESGKPWKLNPGDGAFYGPKLDIMVTDHLRKTHQVATIQLDFQLPERFDLKF 303 (460)
T ss_dssp EEEECCCSSCCSCHHHHHHHHHHHHHHHHHHTCCEEEETTCSCSSCCEEEEEEECTTSCEEEEEEEEEESHHHHHTTCCE
T ss_pred EEEccCCcccCCCHHHHHHHHHHHHHHHHHhCCCeeECCCccccccceEEEEEEccCCCeeeecccccccccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCC---cHHHHHHHHHHHHHC--------
Q 006680 462 SAEDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK---SQPYALQVRDHIYRA-------- 530 (635)
Q Consensus 462 ~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~---~~~~a~~v~~~L~~~-------- 530 (635)
.+.+ |+..+|+|||||++||+||++++|+|+++|+||+|++|.||+|+|++++ ..+||.+|++.|+++
T Consensus 304 ~~~~-g~~~~P~~ih~~~~Gg~eRli~~Lie~~~g~~P~~laP~qv~Vipi~~~~~~~~~~a~~l~~~Lr~~~~~~~~~~ 382 (460)
T 3uh0_A 304 KDQD-NSYKRPIMIHRATFGSIERFMALLIDSNEGRWPFWLNPYQAVIIPVNTKNVQQLDMCTALQKKLRNELEADDMEP 382 (460)
T ss_dssp ECTT-SCEECCEEEEEEEEEEHHHHHHHHHHHHTTCCCGGGCSCCEEEEESSTTCHHHHHHHHHHHHHHHCCCCTTSSCC
T ss_pred ECCC-CCccCcEEEecCcchHHHHHHHHHHHHcCCCCCCCCCCceEEEEEecCCcHHHHHHHHHHHHHHHcCcccccccc
Confidence 9987 7788999999999999999999999999999999999999999999988 899999999999999
Q ss_pred ------CCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCe
Q 006680 531 ------GYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQ 604 (635)
Q Consensus 531 ------G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~ 604 (635)
|++|++|+++.+++|| +|+|++.|+||+||||++|+++|+
T Consensus 383 ~~~~~~Gi~v~~D~~~~~lg~k----------------------------------~r~Ad~~g~p~~ivvG~~E~~~g~ 428 (460)
T 3uh0_A 383 VPLNDWHFNVDLDIRNEPVGYR----------------------------------IKSAILKNYSYLIIVGDEEVQLQK 428 (460)
T ss_dssp CCTTCCCCCEEECCCSSCHHHH----------------------------------HHHHHHHTCSEEEEECHHHHHHTC
T ss_pred cccCCCCEEEEEECCCCCHHHH----------------------------------HHHHHHcCCCEEEEEcchhhhCCe
Confidence 9999999999999999 999999999999999999999999
Q ss_pred EEEEEcCCCc-eecccHHHHHHHHHHHHHhcC
Q 006680 605 VSVRVRDQGD-HSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 605 V~vr~~~~~~-~~~~~~e~l~~~~~~~~~~~~ 635 (635)
|+||+|++++ +..++++++++.+++++++++
T Consensus 429 Vtvr~r~~~e~q~~v~~~el~~~l~~~~~~~~ 460 (460)
T 3uh0_A 429 YNIRERDNRKSFEKLTMSQIWEKFIELEKNYK 460 (460)
T ss_dssp EEEEEGGGTTSCEEECHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCceeEEeeHHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999998764
No 4
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*
Probab=100.00 E-value=4.5e-54 Score=432.25 Aligned_cols=218 Identities=36% Similarity=0.650 Sum_probs=209.2
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHHHHHHH
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHSSAHIL 162 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS~ahlL 162 (635)
+|+|++|||+.++++. |+|+.|+|+.++..+++.+|+|+|||++|||++||+.||.|+++++++++|+++||||++|||
T Consensus 1 ~i~I~~p~G~~~~~~~-g~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~~~~ve~it~~~~~g~~~~~HS~~HlL 79 (224)
T 1tke_A 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLL 79 (224)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEECTTSHHHHHHHHHHHHHHH
T ss_pred CeEEEeCCCCEEEecC-CCCHHHHHHHHhhhcccceEEEEECCEEeccceEcCCCCeEEEEecCchhHHHHHHHHHHHHH
Confidence 3789999999999998 999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhc--Ccch
Q 006680 163 GQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEMFSD--NNFK 237 (635)
Q Consensus 163 ~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~--~~~K 237 (635)
++|++++| ++++++||+++ +||||||.. +.++|++|+++||++|+++| |+||++.+++++||+++|++ +++|
T Consensus 80 ~~A~~~~~~~~~~~~g~~~~--~g~y~d~~~-~~~~t~edl~~IE~~m~~iI~~~~pi~~~~~~~~eA~~~f~~~~~~~k 156 (224)
T 1tke_A 80 GHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYK 156 (224)
T ss_dssp HHHHHHHSTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHTTCCBCEEEECCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHCCCcEEEECCccC--CeEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCCCCEEEEEecHHHHHHHHHHcCCchH
Confidence 99999999 68999999999 999999987 46799999999999999999 99999999999999999987 6789
Q ss_pred hhhccc-CCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeeccccC
Q 006680 238 VEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYGISYP 304 (635)
Q Consensus 238 ~~LL~~-~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG~~fp 304 (635)
++|++. +|.++.|++|+||+|+|+|+||||||||+|+.|+|+++++|||+|++++++||||||++||
T Consensus 157 ~~l~~~~~~~~~~v~vy~~g~~~dlC~G~Hv~~Tg~i~~fkl~~~~~~yw~g~~~~~~lqRiyg~a~~ 224 (224)
T 1tke_A 157 VSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIYGTAWA 224 (224)
T ss_dssp HHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEEEEECC
T ss_pred HHHhccccCCCCeeEEEEeCCEEEECCCcCCCcCcccceEEEEEecceeEcCCCCCceeEEEEEeccC
Confidence 999997 7777899999999999999999999999999999999999999999999999999999997
No 5
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=100.00 E-value=9.4e-52 Score=447.68 Aligned_cols=289 Identities=44% Similarity=0.812 Sum_probs=275.7
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCC-eEEEEEccCCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF-TYELKLSTRPE 389 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~-~~~l~ls~r~~ 389 (635)
.+|+++|++++++|.+||+|.++...||+|+|||+|+|+|+||.++++++|+..+++++.++|+.||+ ++.+.++++++
T Consensus 105 ~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~~~~~~~e~~e~i~~~~~~~~~lgl~~~~~~~~~~~~ 184 (401)
T 1evl_A 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPE 184 (401)
T ss_dssp CBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTTTCSCCEEEEECCCS
T ss_pred hhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEecCCc
Confidence 37889999999999999999986678999999999999999998777999999999999999999999 69999999998
Q ss_pred CcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCcc
Q 006680 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKT 469 (635)
Q Consensus 390 ~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~ 469 (635)
++.|+.+.|+.|+..+.++|+..|+++.+++++++||||++|+.+.+++|+.++|+|+++||+++.++|+.|.+.+ |+.
T Consensus 185 ~~~~~~~~~~~a~~~~~~~l~~~g~~~~~~~~~~~~y~~~~d~~~~~~~G~~~~~gt~~~d~~l~~~~~~~y~~~~-g~~ 263 (401)
T 1evl_A 185 KRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGED-NER 263 (401)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHTTCCCEEETTCSBTTBCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTT-SCE
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcCCCceecCCCccccCCCcCeEEEecCCCeEEeeeeeeccccccccCCEEECCC-CCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998766 666
Q ss_pred ccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCc
Q 006680 470 ERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNS 549 (635)
Q Consensus 470 ~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~ 549 (635)
..|+|+|+|++||+||++++|+|++.|.||.|++|.||+|+|++++..++|.+|++.||++|++|++|+++++++||
T Consensus 264 ~~p~~~~~~~~GgieRli~~l~e~~~~~~p~~~ap~~v~vi~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~k--- 340 (401)
T 1evl_A 264 KVPVMIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFK--- 340 (401)
T ss_dssp ECCEEEEEEEEEEHHHHHHHHHHHHTTCCCTTTCSSCEEEEESSGGGHHHHHHHHHHHHHTTCCEEEECCSSCHHHH---
T ss_pred cCcEEEEecCCCcHHHHHHHHHHHhCCcCCCCCCCeEEEEEecCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH---
Confidence 78999999999999999999999998999999999999999999999999999999999999999999998999999
Q ss_pred ccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHH
Q 006680 550 FVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 629 (635)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~ 629 (635)
+++|++.|+||++|||++|.++|+|+||+|++++|..++++++++.+++
T Consensus 341 -------------------------------~~~A~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~q~~v~~~el~~~l~~ 389 (401)
T 1evl_A 341 -------------------------------IREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQ 389 (401)
T ss_dssp -------------------------------HHHHHHTTCSEEEEECHHHHHHTEEEEEETTSCEEEEEEHHHHHHHHHH
T ss_pred -------------------------------HHHHHhcCCCEEEEECcchhhCCeEEEEECCCCceEEeeHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998
Q ss_pred HHHhc
Q 006680 630 KLEAF 634 (635)
Q Consensus 630 ~~~~~ 634 (635)
+++++
T Consensus 390 ~~~~~ 394 (401)
T 1evl_A 390 EIRSR 394 (401)
T ss_dssp HHHTT
T ss_pred HHhhh
Confidence 88765
No 6
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A
Probab=100.00 E-value=6.7e-47 Score=418.17 Aligned_cols=287 Identities=33% Similarity=0.550 Sum_probs=262.8
Q ss_pred hccc---ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHH-hCC----e-EE
Q 006680 311 HAFA---ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRI-FGF----T-YE 381 (635)
Q Consensus 311 esyr---elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~-~G~----~-~~ 381 (635)
.+|+ ++|++++++|.+||+|.++++.||+|+|||+|+|+|+||.++++.+|+..++.++.++|+. ||+ + +.
T Consensus 124 ~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~ 203 (471)
T 3a32_A 124 AKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPGGRVIDVVYDVFEEMKLVLERLFKLGVSSETFK 203 (471)
T ss_dssp HHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEE
T ss_pred hhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcChHHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeE
Confidence 4787 9999999999999999999889999999999999999999999878888899999999999 999 4 99
Q ss_pred EEEccCC-----CCcCCChhhHHHHHHHHHHHHHHc----CCCcEEcCCCCcccccchhHHHHH---Hhhhhhhhceeee
Q 006680 382 LKLSTRP-----EKYLGDLATWEKAEAALTEALNEF----GKPWQINEGDGAFYGPKIDISVSD---ALKRKFQCATLQL 449 (635)
Q Consensus 382 l~ls~r~-----~~~lg~~~~~~~a~~~l~~~l~~~----g~~~~~~~g~~af~gpkid~~~~d---~l~r~~~~~t~~l 449 (635)
+.+++++ ++++|..+.|++++..+.+.+... |.++.++++.++||||+++..+.| ++++.++++++++
T Consensus 204 l~i~~~~~~~~~e~~~g~~~~~d~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~gp~i~~~l~d~~~~l~~~~~~g~~~l 283 (471)
T 3a32_A 204 VRLSMSDKSLIGKEFMGSKEEWEGAEEALREAASRINEKYGIDIVELEGEAAFYGPKLDFIMMVEESGVSKEWQMGTIQF 283 (471)
T ss_dssp EEEECCCGGGBTTTBCSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEETTCSBTTBCEEEEEEEEESSSCEEEEEEEEEEE
T ss_pred EEEecCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHhcCCceEecccchhhCCCccceEEeccHHhhhhhheeeeEEe
Confidence 9999999 889999999999998887776554 888999999999999999988877 8888899999999
Q ss_pred ecCCCeeeeeEEEe--cCCCccccccccccceeeeHHHHHHHHHHHhCCCCCCCCCCceEEEEecC------CCcHHHHH
Q 006680 450 DFQLPDRFNLGYSA--EDEAKTERPVMIHRAILGSVERMFAILLEHYKGKWPFWLSPRQAIVCPVS------EKSQPYAL 521 (635)
Q Consensus 450 d~~l~~~~~L~Y~~--~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~g~~p~~lsp~qv~v~p~~------~~~~~~a~ 521 (635)
|++++..|++.||| .+ |.. .|+++|++++||+||++++|+|+++|.||.|++|.||+|+|++ ++..++|.
T Consensus 284 D~~l~r~~d~~Yyt~~~~-G~~-e~~~i~~~i~GgieRli~~lie~~~g~~p~~~ap~qv~Iip~~~~~~~~~~~~~~a~ 361 (471)
T 3a32_A 284 DFNLPRRFRLYDVVREEF-GIE-EVYIIHRALLGSIERFLGVYLEHRRGRMPFTLAPIQFAVIAVKTGGEVDREIEDLAS 361 (471)
T ss_dssp ESSHHHHTTHHHHHHHHH-CCS-CEEEEEEEEEEEHHHHHHHHHHHTTTCCCGGGCSCSEEEEEEECSSTTHHHHHHHHH
T ss_pred cccccccCCceEeccccC-Cce-eeEEEeccccCcHHHHHHHHHHHhCCCCCCCcCCceEEEEEccCcccccHHHHHHHH
Confidence 99999888888999 33 333 7888999999999999999999988999999999999999998 56889999
Q ss_pred HHHHHHHHCCCEEEEeC-CCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHh-hcCCcEEEEEcccc
Q 006680 522 QVRDHIYRAGYYVDVDT-TDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQ-LAQYNFILVVGEEE 599 (635)
Q Consensus 522 ~v~~~L~~~G~~v~~d~-~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~-~~~~~~~lvvG~~E 599 (635)
++++.||++|++|++|+ ++.++++| +++|+ +.|+||++|||++|
T Consensus 362 ~i~~~Lr~~Gi~v~~D~~~~~~~g~k----------------------------------~~~a~~~~gip~~iiiG~~e 407 (471)
T 3a32_A 362 SIAKGLLDKGFRVAVKGSSKTGLSSD----------------------------------VRHIESTAKPAVNVFIGAKE 407 (471)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTHHHH----------------------------------HHHHHHTTCCSEEEEECHHH
T ss_pred HHHHHHHHCCCEEEEecCCCCCHHHH----------------------------------HHHHHHhcCCCEEEEECchh
Confidence 99999999999999999 88999999 99999 99999999999999
Q ss_pred cccCeEEEEEcCCCc--eecccHH-----HHHHHHHHHHHh
Q 006680 600 AKSGQVSVRVRDQGD--HSNMSIE-----DLLKHFKEKLEA 633 (635)
Q Consensus 600 ~~~~~V~vr~~~~~~--~~~~~~e-----~l~~~~~~~~~~ 633 (635)
+++|+|+||+|++++ +..|+++ ++++.+.+++++
T Consensus 408 ~~~~~V~vr~r~~~~q~~~~v~~~~~~~~~~~~~~~~~~~~ 448 (471)
T 3a32_A 408 VREKVLDVRVFDLESMKRRRLAIAYGDAADAVENLAAVAEE 448 (471)
T ss_dssp HHHTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred hhCCEEEEEECCCCccceEEEeecccchhHHHHHHHHHHHH
Confidence 999999999999998 6889888 888888877765
No 7
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-40 Score=370.03 Aligned_cols=254 Identities=20% Similarity=0.234 Sum_probs=227.3
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEE-EecCchhHHHHHHHHHHHHHHHHHh-CCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRESQIKDEVRGVLEFIDYAYRIF-GFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~~~~~~~~E~~~~l~~~~~~~~~~-G~~~~l~ls~r~ 388 (635)
.+|++||++++++|++||+|.++. .||+|+|||+|+|+|+ ||+++++++|+..+++++.++|+.| |++|.+..+++|
T Consensus 142 ~SyrdLPlrl~q~g~~fR~E~~~~-~Gl~R~ReF~q~e~h~~~~~~e~a~~E~~~~l~~~~~i~~~ll~lp~~~~~~t~~ 220 (519)
T 4hvc_A 142 QSHRDLPIKLNQWCNVVRWEFKHP-QPFLRTREFLWQEGHSAFATMEEAAEEVLQILDLYAQVYEELLAIPVVKGRKTEK 220 (519)
T ss_dssp SSGGGCCEEEEEEEEEECCCCSCC-BTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSCCCCEEEECCTT
T ss_pred cccccCCeEEEEEcCeeeCCCCCC-CCCcceeEEEEeeEEEEecCHHHHHHHHHHHHHHHHHHHHHhcCCcceeeecCCc
Confidence 489999999999999999997776 8999999999999998 8888889999999999999999997 999888889999
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhcee-eeecCCCeeeeeEEEecC-C
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAED-E 466 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~-~ld~~l~~~~~L~Y~~~~-e 466 (635)
++++|...+|+ +. +|+ ++.||.+||+|+ +||++.+.+|++.|.+.+ .
T Consensus 221 e~~~Ga~~t~~------------------iE----a~~---------p~~gr~~q~gT~~~Lg~~~s~~~~i~y~d~~~~ 269 (519)
T 4hvc_A 221 EKFAGGDYTTT------------------IE----AFI---------SASGRAIQGGTSHHLGQNFSKMFEIVFEDPKIP 269 (519)
T ss_dssp TSCTTSSEEEE------------------EE----EEE---------TTTTEEEEEEEEEEEETHHHHHHTCEEECTTST
T ss_pred cccCCchhhee------------------ee----eee---------ccCCCEEeecccccccchhhhhcCcEEeccccC
Confidence 99999887652 11 443 467889999999 799999999999999864 2
Q ss_pred CccccccccccceeeeHHHHHHHHHHHhC----CCCCCCCCCceEEEEecC----------CCcHHHHHHHHHHHHHCCC
Q 006680 467 AKTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVS----------EKSQPYALQVRDHIYRAGY 532 (635)
Q Consensus 467 ~~~~~p~~i~~ai~GgveR~~~~l~e~~~----g~~p~~lsp~qv~v~p~~----------~~~~~~a~~v~~~L~~~G~ 532 (635)
++ ..++|++++|..+|++++|+|++. +.||+|++|.||+|+|++ ++..++|.+|++.|+++|+
T Consensus 270 g~---~~~vh~~~~Gi~~R~l~aliE~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~e~~~~~a~~l~~~L~~~Gi 346 (519)
T 4hvc_A 270 GE---KQFAYQNSWGLTTRTIGVMTMVHGDNMGLVLPPRVACVQVVIIPCGITNALSEEDKEALIAKCNDYRRRLLSVNI 346 (519)
T ss_dssp TC---EEECEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCC---CCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CC---EEEEEEccccHHHHHHHHHHHHhCccccccccccCCCeEEEEEEecCcccccchhhHHHHHHHHHHHHHHHHCCC
Confidence 32 236899999955999999999864 479999999999999998 3568999999999999999
Q ss_pred EEEEeCCC-CCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcC
Q 006680 533 YVDVDTTD-RKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRD 611 (635)
Q Consensus 533 ~v~~d~~~-~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~ 611 (635)
+|++|+++ +++|+| +++|++.|+||+|+||++|+++|+|+||+|+
T Consensus 347 rv~~Ddr~~~s~G~K----------------------------------~~~ael~GiP~~ivIG~kele~g~V~vr~R~ 392 (519)
T 4hvc_A 347 RVRADLRDNYSPGWK----------------------------------FNHWELKGVPIRLEVGPRDMKSCQFVAVRRD 392 (519)
T ss_dssp CEEECCCSSSCHHHH----------------------------------HHHHHHTTCSEEEEECHHHHHHTEEEEEETT
T ss_pred EEEEECCCCCCHHHH----------------------------------HHHHHhcCCCEEEEECchhhcCCeEEEEECC
Confidence 99999997 499999 9999999999999999999999999999999
Q ss_pred CCceecccHHHHHHHHHHHHHh
Q 006680 612 QGDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 612 ~~~~~~~~~e~l~~~~~~~~~~ 633 (635)
+|++..++++++++.+++++++
T Consensus 393 tgeq~~v~~~el~~~l~~ll~~ 414 (519)
T 4hvc_A 393 TGEKLTVAENEAETKLQAILED 414 (519)
T ss_dssp TCCEEEEEGGGHHHHHHHHHHH
T ss_pred CCCccceeHHHHHHHHHHHHHH
Confidence 9999999999999999888764
No 8
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=5.6e-41 Score=373.06 Aligned_cols=242 Identities=20% Similarity=0.324 Sum_probs=216.4
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEE-ecCchhHHHHHHHHHHHHHHH-HHhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIF-CRESQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if-~~~~~~~~E~~~~l~~~~~~~-~~~G~~~~l~ls~r~ 388 (635)
.+|++||++++++|.+||+|.++. .||+|+|||+|.|+|+| |+++++++|+..+++++.++| +.|||+|.+ +++|
T Consensus 136 ~SyrdLPlrl~q~~~~fR~E~~~~-~GL~R~REF~q~e~h~f~~~~e~a~~e~~~~l~~~~~i~~~~LGlp~~~--~~~~ 212 (518)
T 3ial_A 136 RSYKDLPLKIHQTCTIFRHETKNT-KPLIRVREIHWNEAHCCHATAEDAVSQLSDYWKVIDTIFSDELCFKGQK--LRRV 212 (518)
T ss_dssp CBGGGCCEEEEEEEEEECTTCCSC-BTTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHTTTTCCCCEE--EEEC
T ss_pred cccccCCeEEEEEeceecCCCCCC-CCCceeeEEEEeeEEEEECCHHHHHHHHHHHHHHHHHHHHHhcCCcEEe--eecC
Confidence 489999999999999999997775 89999999999999999 666779999999999999999 999999743 3444
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e~ 467 (635)
+ |+ .+.||+|+|+||+.+.+ ||.+|++|++ ||++++.+||+.|.+.+ +
T Consensus 213 ~--------~e--------------------~~~gA~yt~~iE~~~pd--gr~ie~gt~~~Lg~~~s~rf~i~y~d~~-g 261 (518)
T 3ial_A 213 C--------WD--------------------RFPGADYSEVSDVVMPC--GRVLQTAGIHNLGQRFSSTFDILYANKA-N 261 (518)
T ss_dssp G--------GG--------------------CCTTCSEEEEEEEECTT--SCEEEEEEEEEEETHHHHHTTCCEECTT-C
T ss_pred h--------hh--------------------ccCCCccceEEEEEcCC--CCEEEEeceecccchhhhhcCcEEECCC-C
Confidence 2 21 13468999999987776 8999999999 89999999999999887 5
Q ss_pred ccccccccccceeeeHHHHHHHHHHHhC----CCCCCCCCCceEEEEecC----------CCcHHHHHHHHHHHHHC-CC
Q 006680 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVS----------EKSQPYALQVRDHIYRA-GY 532 (635)
Q Consensus 468 ~~~~p~~i~~ai~GgveR~~~~l~e~~~----g~~p~~lsp~qv~v~p~~----------~~~~~~a~~v~~~L~~~-G~ 532 (635)
+... +|++++|+.+|++++|+|++. ..||+||+|.||+|+|++ ++..++|.+|++.|+++ |+
T Consensus 262 ~~~~---~h~~~~G~~~R~iaaliE~~~de~Gl~lP~~LAP~qV~IiPi~~~~~~~~~~~~~~~~~a~~l~~~L~~~~Gi 338 (518)
T 3ial_A 262 ESVH---PYLTCAGISTRVLACALSIHGDSGGLVLPPLIAPIHVVIIPIGCGKKNNQESDQQVLGKVNEIADTLKSKLGL 338 (518)
T ss_dssp CEEC---CEEEEEEEETHHHHHHHHHHCBTTBCCCCGGGCSCSEEEEEESCSCTTCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CEee---eEEeccchHHHHHHHHHHHhCCCCccccCCccceEEEEEEEeecCccccccchHHHHHHHHHHHHHHHhccCe
Confidence 5444 378999977999999999986 389999999999999998 34679999999999999 99
Q ss_pred EEEEeCC-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcC
Q 006680 533 YVDVDTT-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRD 611 (635)
Q Consensus 533 ~v~~d~~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~ 611 (635)
+|++|++ +.++|+| +++|++.|+||+|+||++|+++|+|+||+|+
T Consensus 339 rv~~Ddr~~~s~G~K----------------------------------~~~ael~GvP~~i~vG~ke~e~g~V~vr~Rd 384 (518)
T 3ial_A 339 RVSIDDDFSKSMGDK----------------------------------LYYYELKGVPLRIEVGQRDLANGQCIVVPRD 384 (518)
T ss_dssp CEEECCCTTSCHHHH----------------------------------HHHHHHTTCSEEEEEEHHHHHTTEEEEEETT
T ss_pred EEEEECCCCCCHHHH----------------------------------HHHHHHcCCCEEEEECcchhhCCEEEEEECC
Confidence 9999998 8999999 9999999999999999999999999999999
Q ss_pred CCc--eecccHHHH
Q 006680 612 QGD--HSNMSIEDL 623 (635)
Q Consensus 612 ~~~--~~~~~~e~l 623 (635)
+++ +..|+++++
T Consensus 385 ~~~~~k~~v~~~el 398 (518)
T 3ial_A 385 VGKDQKRVIPITEV 398 (518)
T ss_dssp TCGGGCEEEEHHHH
T ss_pred CCccceeEeeHHHH
Confidence 999 999999999
No 9
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=100.00 E-value=2.8e-38 Score=349.81 Aligned_cols=250 Identities=21% Similarity=0.306 Sum_probs=216.3
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHHHHHHHHH-HHhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFIDYAY-RIFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l~~~~~~~-~~~G~~~~l~ls~r~ 388 (635)
.+|+++|++++++|++||+|.+++ ||+|+|||+|+|+|+|+.. +++++|+..+++++.++| +.||+++.+.+++++
T Consensus 125 ~s~r~LP~rl~qig~vfR~E~~~r--Gl~R~REF~q~d~~~~~~~~~~ad~E~~~~l~~~~~i~~~~Lgl~~~~~~~~~~ 202 (477)
T 1hc7_A 125 RSWRDLPQLLNQWGNVVRWEMRTR--PFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEK 202 (477)
T ss_dssp CBGGGCCEEEEEEEEEECCCSSCB--TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTT
T ss_pred hccccCCeeeEeecCEEeCCCCCC--CcceeEEEEEccEEEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeCChH
Confidence 488999999999999999998854 8999999999999996554 559999999999999999 899999999999999
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e~ 467 (635)
++++|...+|+ + +..+.| +|.++++|++ |+++++.+||+.|.+.+ |
T Consensus 203 e~~~g~~~~~~------------------i------------e~~~~d--gr~~~~gt~~~lg~~~s~~~g~~y~~~~-G 249 (477)
T 1hc7_A 203 EKFAGAVYTTT------------------I------------EALMKD--GKALQAGTSHYLGENFARAFDIKFQDRD-L 249 (477)
T ss_dssp TSCTTSSEEEE------------------E------------EEECTT--SCEEEEEEEEEEETHHHHHTTCEEECTT-S
T ss_pred HhcCCcccceE------------------E------------EEEcCC--CcEEEEeeeEEcccccccccCeEEECCC-C
Confidence 99988765542 1 000111 3557889988 99888999999998765 4
Q ss_pred ccccccccccceeeeHHHHHHHHHHHhC----CCCCCCCCCceEEEEecCC-----CcHHHHHHHHHHHHHCCCEEEEeC
Q 006680 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPVSE-----KSQPYALQVRDHIYRAGYYVDVDT 538 (635)
Q Consensus 468 ~~~~p~~i~~ai~GgveR~~~~l~e~~~----g~~p~~lsp~qv~v~p~~~-----~~~~~a~~v~~~L~~~G~~v~~d~ 538 (635)
+... +|++.+|.-||++++|+|++. +.||+|++|.||+|+|+++ +..++|.+|++.|+++|++|++|+
T Consensus 250 ~~~~---~~~~~~GigeRli~~lie~~~d~~gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~ 326 (477)
T 1hc7_A 250 QVKY---VHTTSWGLSWRFIGAIIMTHGDDRGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDD 326 (477)
T ss_dssp CEEE---CEEEEEEEETHHHHHHHHHHCBTTBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECC
T ss_pred CEEe---eeEeeccHHHHHHHHHHHHhCccccccCCcccCCceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeC
Confidence 4322 466667733999999999874 4899999999999999986 578999999999999999999999
Q ss_pred C-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceec
Q 006680 539 T-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSN 617 (635)
Q Consensus 539 ~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~ 617 (635)
+ +.++++| +++|++.|+||+||||++|+++|+|+||+|+ +++..
T Consensus 327 ~~~~s~g~k----------------------------------~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~-~eq~~ 371 (477)
T 1hc7_A 327 RDQHTPGYK----------------------------------FHEWELKGVPFRVELGPKDLEGGQAVLASRL-GGKET 371 (477)
T ss_dssp CSSSCHHHH----------------------------------HHHHHHTTCSEEEEECHHHHHTTEEEEEETT-SCCCE
T ss_pred CCCCCHHHH----------------------------------HHHHhhcCCCEEEEECcchhcCCEEEEEEec-CceEE
Confidence 8 8999999 9999999999999999999999999999999 99999
Q ss_pred ccHHHHHHHHHHHHHh
Q 006680 618 MSIEDLLKHFKEKLEA 633 (635)
Q Consensus 618 ~~~e~l~~~~~~~~~~ 633 (635)
++++++++.+++++++
T Consensus 372 v~~~el~~~l~~~l~~ 387 (477)
T 1hc7_A 372 LPLAALPEALPGKLDA 387 (477)
T ss_dssp EEGGGHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHH
Confidence 9999999999887764
No 10
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Probab=100.00 E-value=1.4e-37 Score=357.03 Aligned_cols=290 Identities=20% Similarity=0.263 Sum_probs=205.0
Q ss_pred hhhhhc-ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhH--------------------------
Q 006680 307 KRLKHA-FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIK-------------------------- 359 (635)
Q Consensus 307 ~~L~es-yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~-------------------------- 359 (635)
+.+..+ |+++|++++++|.+||+|.++ ..||+|+|||+|+|+|+||.+++..
T Consensus 255 ~r~~~~~~~~LP~~~aqiG~~fRnEisP-r~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~~~~~~~~~~~~ 333 (693)
T 2zt5_A 255 KRLLEFNQGKLPFAAAQIGNSFRNEISP-RSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLYSAKAQVSGQSA 333 (693)
T ss_dssp HHHHHHTTTCSCEEEEEEEEEECCCSSC-CSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEECHHHHHTTCCC
T ss_pred HHHHHHhCcCCCEEEEeecceecCCCCC-CCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhhhhhhhcccccc
Confidence 444444 789999999999999999776 4999999999999999999998742
Q ss_pred ----------------HHHHHHHHHHHHHHHHhCCe-EEEEEccC-CC-Cc--------------CCChhhHHHH---HH
Q 006680 360 ----------------DEVRGVLEFIDYAYRIFGFT-YELKLSTR-PE-KY--------------LGDLATWEKA---EA 403 (635)
Q Consensus 360 ----------------~E~~~~l~~~~~~~~~~G~~-~~l~ls~r-~~-~~--------------lg~~~~~~~a---~~ 403 (635)
.++..++.++..+|..||++ ..++++++ |+ .. .|..++|..| ..
T Consensus 334 ~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~~~~~~~e~a~ya~~~~d~e~~~~~g~~e~~~~a~r~~~ 413 (693)
T 2zt5_A 334 RKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRFRQHMENEMAHYACDCWDAESKTSYGWIEIVGCADRSCY 413 (693)
T ss_dssp EEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEEEECCGGGSCTTCSSEEEEEEEETTEEEEEEEEECCCSH
T ss_pred ccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEEeccCchhhccchhhhhhehhhccCChHHHHHHHHHHHH
Confidence 55777999999999999997 56666766 32 22 3444444433 24
Q ss_pred HHHHHHHHcCCCcE---------------EcCCCCcccccchhH---HHHHHhhhhhhh--------------ceeeee-
Q 006680 404 ALTEALNEFGKPWQ---------------INEGDGAFYGPKIDI---SVSDALKRKFQC--------------ATLQLD- 450 (635)
Q Consensus 404 ~l~~~l~~~g~~~~---------------~~~g~~af~gpkid~---~~~d~l~r~~~~--------------~t~~ld- 450 (635)
.|...++..|.++. +++++++| ||+++. .+.|++++.+++ .++++|
T Consensus 414 dL~~~~~~s~~~l~~~~~~~~p~~~~~~~~~~~~~~~-g~~i~~~Ap~i~d~L~~~~~~~~~~l~~~L~~~g~i~i~vdG 492 (693)
T 2zt5_A 414 DLSCHARATKVPLVAEKPLKEPKTVNVVQFEPSKGAI-GKAYKKDAKLVMEYLAICDECYITEMEMLLNEKGEFTIETEG 492 (693)
T ss_dssp HHHHHHHHHTCCCCEEEC--------------------------------------------------------------
T ss_pred HHHHHHHHhccchhhhcccCcccceeeeeecCChHHH-HHHHHhcccHHHHHhhhhhHHHHHHHHHHHHhcCCEEEEECC
Confidence 67777777777655 35778888 888764 456666665543 245555
Q ss_pred --cCCCe-eeeeEEEecC-CCccccccccccceeeeHHHHHHHHHHH-hC----------CCCCCCCCCceEEEEecCCC
Q 006680 451 --FQLPD-RFNLGYSAED-EAKTERPVMIHRAILGSVERMFAILLEH-YK----------GKWPFWLSPRQAIVCPVSEK 515 (635)
Q Consensus 451 --~~l~~-~~~L~Y~~~~-e~~~~~p~~i~~ai~GgveR~~~~l~e~-~~----------g~~p~~lsp~qv~v~p~~~~ 515 (635)
|.++. ++++++|+.. .|+...|++||.|+ |++|++++|+|+ +. +.||+|++|.||+|+|++++
T Consensus 493 t~Fei~~~~~~~~~y~~~~~Ggry~P~Vi~~s~--GigRli~aLie~~~~~~~~~~~r~g~~~P~~lAP~qV~Vipl~~~ 570 (693)
T 2zt5_A 493 KTFQLTKDMINVKRFQKTLYVEEVVPNVIEPSF--GLGRIMYTVFEHTFHVREGDEQRTFFSFPAVVAPFKCSVLPLSQN 570 (693)
T ss_dssp -------------------CCEEECCEEEEEEE--EHHHHHHHHHHHHEEECSSTTCCEEECCCTTTSSCSEEEEESCCS
T ss_pred EEEEecccccceeeEEeccCCcEecCcceeCee--hHHHHHHHHHHHhccccccccccccccCCCCCCCCeEEEEEecCc
Confidence 66654 3455534322 34555899889775 699999999887 33 58999999999999999865
Q ss_pred --cHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEE
Q 006680 516 --SQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFIL 593 (635)
Q Consensus 516 --~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~l 593 (635)
..++|.+|++.||++|++|++|++++++++| +++|++.|+||+|
T Consensus 571 ~~~~~~A~~l~~~Lr~~Gi~v~~D~~~~sigkk----------------------------------~k~Ad~~G~p~~I 616 (693)
T 2zt5_A 571 QEFMPFVKELSEALTRHGVSHKVDDSSGSIGRR----------------------------------YARTDEIGVAFGV 616 (693)
T ss_dssp TTTHHHHHHHHHHHHHTTCCEEECCCCSCHHHH----------------------------------HHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHH----------------------------------HHHHHHcCCCEEE
Confidence 8999999999999999999999999999999 9999999999999
Q ss_pred EEccccc--ccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 594 VVGEEEA--KSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 594 vvG~~E~--~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
|||++|+ ++|+|+||+|++++|..++++++++.++++++.+
T Consensus 617 iIG~~El~~~~g~Vtvr~r~t~eq~~v~l~el~~~l~~~l~~~ 659 (693)
T 2zt5_A 617 TIDFDTVNKTPHTATLRDRDSMRQIRAEISELPSIVQDLANGN 659 (693)
T ss_dssp EECHHHHTSSSCEEEEEETTTCCEEEEETTTHHHHHHHHHTTS
T ss_pred EEcchhhhccCCEEEEEECCCCceEEEeHHHHHHHHHHHHhCc
Confidence 9999999 9999999999999999999999999998877643
No 11
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1
Probab=100.00 E-value=1.7e-37 Score=342.06 Aligned_cols=251 Identities=16% Similarity=0.280 Sum_probs=215.9
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceee-ecCEEEEecC-chhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIFCRE-SQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~-Q~d~~if~~~-~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
.+|+++|++++++|.+||+|.++ .+||+|+|||+ |+|+|+|+.. +++++|+..+++++.++|+.||+++.+.+++++
T Consensus 119 ~s~r~LP~rl~qig~~fR~E~~~-~rGl~R~REF~qq~d~~~~~~~~~~a~~e~~~~i~~~~~~~~~LGl~~~~~~~~~~ 197 (459)
T 1nj8_A 119 KVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEW 197 (459)
T ss_dssp CBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTT
T ss_pred hhcccCCeEEEEEccEecCccCC-CCCceEeeeeeccCcEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEeecCch
Confidence 37889999999999999999994 46999999999 9999987655 459999999999999999999999999998888
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e~ 467 (635)
+++.|...+|+ |+..+.| |+.++++|++ |+++++.+||+.|.+.+ |
T Consensus 198 ek~~ga~~~~~------------------------------ie~~~~d--g~~~e~gt~~~lg~~~s~~~~~~Y~~~~-G 244 (459)
T 1nj8_A 198 DKFPGAEYTMA------------------------------FDTIFPD--GRTMQIATVHNLGQNFSKTFEIIFETPT-G 244 (459)
T ss_dssp SCCTTCSEEEE------------------------------EEEECTT--SCEEEEEEEEEEETHHHHHTTCEEECTT-S
T ss_pred hhcCCccccee------------------------------EEEEcCC--CcEEEEEEEeecccccccccCeEEECCC-C
Confidence 87777665542 1111111 5678899997 99888999999999865 4
Q ss_pred ccccccccccceeeeHHHHHHHHHHHhC----CCCCCCCCCceEEEEec-C-C---CcHHHHHHHHHHHHHCCCEEEEeC
Q 006680 468 KTERPVMIHRAILGSVERMFAILLEHYK----GKWPFWLSPRQAIVCPV-S-E---KSQPYALQVRDHIYRAGYYVDVDT 538 (635)
Q Consensus 468 ~~~~p~~i~~ai~GgveR~~~~l~e~~~----g~~p~~lsp~qv~v~p~-~-~---~~~~~a~~v~~~L~~~G~~v~~d~ 538 (635)
+.. .+|++.+|.-||++++|+|+++ +.||+|++|.||+|+|+ + + +..++|.+|++.|+++ ++|++|+
T Consensus 245 ~~~---~v~~~~~GigeRli~alie~~~d~~gl~~P~~laP~qv~Iipi~~~~~~~~~~~~a~~l~~~Lr~~-i~v~~D~ 320 (459)
T 1nj8_A 245 DKD---YAYQTCYGISDRVIASIIAIHGDEKGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLKGK-FRVHIDD 320 (459)
T ss_dssp SEE---ECEEEEEEECTHHHHHHHHHHCBTTBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHHTT-SCEEECC
T ss_pred CEe---eeeEeeccHHHHHHHHHHHHhCCCceeEcCCcCCCCcEEEEecccCCcHHHHHHHHHHHHHHHhhh-cEEEEEC
Confidence 432 2466666622999999999875 47999999999999999 6 4 5889999999999999 9999999
Q ss_pred CCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecc
Q 006680 539 TDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNM 618 (635)
Q Consensus 539 ~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~ 618 (635)
++.++++| +++|++.|+||+||||++|+++|+|+||+|+++++..+
T Consensus 321 ~~~~~g~k----------------------------------~~~a~~~G~p~~iiiG~~el~~~~V~vr~r~t~eq~~v 366 (459)
T 1nj8_A 321 RDIRPGRK----------------------------------FNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQV 366 (459)
T ss_dssp SCSCHHHH----------------------------------HHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEE
T ss_pred CCCCHHHH----------------------------------HHHHHHcCCCEEEEECcchhcCCEEEEEECCCCceEEE
Confidence 99999999 99999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHh
Q 006680 619 SIEDLLKHFKEKLEA 633 (635)
Q Consensus 619 ~~e~l~~~~~~~~~~ 633 (635)
+++++++.+++++++
T Consensus 367 ~~~el~~~l~~~l~~ 381 (459)
T 1nj8_A 367 DETQLMEVVEKTLNN 381 (459)
T ss_dssp ETTSHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHH
Confidence 999999999887754
No 12
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*
Probab=100.00 E-value=2e-36 Score=341.53 Aligned_cols=274 Identities=22% Similarity=0.346 Sum_probs=210.6
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCc-hhHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-QIKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE 389 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~-~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~ 389 (635)
.+|+++|+|++++|.+||+|.+| ..||+|+|||+|+|+|+||.++ ++++|+..+++++.++|+.||++|.+.++++.
T Consensus 123 ~s~~~lP~r~~~~g~~fR~E~~~-~~Gl~R~ReF~q~d~~~f~~~~~~~~~e~~~~~~~~~~~~~~lgl~~~~~~~~~g- 200 (572)
T 2j3l_A 123 NSYKRLPLNLYQIQTKYRDEKRS-RSGLLRGREFIMKDGYSFHADEASLDQSYRDYEKAYSRIFERCGLEFRAIIGDGG- 200 (572)
T ss_dssp CBGGGCCEEEEEEEEEECCCSSC-CTGGGSCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG-
T ss_pred cChhhcCHhhheecCeeccCcCc-ccCccccceeEEeeeEEEcCCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccc-
Confidence 37889999999999999999997 6999999999999999999965 59999999999999999999999999887632
Q ss_pred CcCCCh-----------------------------------------------------h--------------------
Q 006680 390 KYLGDL-----------------------------------------------------A-------------------- 396 (635)
Q Consensus 390 ~~lg~~-----------------------------------------------------~-------------------- 396 (635)
.+|.. +
T Consensus 201 -~~g~~~s~E~~~~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~l~~~lg~~~~~i~K 279 (572)
T 2j3l_A 201 -AMGGKDSKEFMAISEIGEDTICYSTESDYAANLEMATSLYTPKKSHETQLDLEKIATPEVGTIAEVANFFEVEPQRIIK 279 (572)
T ss_dssp -GGTCSSEEEEEEECTTCSEEEEEESSSSCEEETTTCCCCCCCCCCCCCCCCCEEEECTTCCSHHHHHHHHTCCGGGBEE
T ss_pred -cCCCcccEEEEEEcCCCcceEEEeCCCCcccchhhhhcccccccccccccccceecCCCCCcHHHHHHHhCcCHHHeEE
Confidence 11100 0
Q ss_pred ---------------------hHHHHHHHHHHHHHHcCCCcEEc--------CC-CCccccc-----ch----hHHHHH-
Q 006680 397 ---------------------TWEKAEAALTEALNEFGKPWQIN--------EG-DGAFYGP-----KI----DISVSD- 436 (635)
Q Consensus 397 ---------------------~~~~a~~~l~~~l~~~g~~~~~~--------~g-~~af~gp-----ki----d~~~~d- 436 (635)
.|.++.+ +|.. .+.... .| ...+++| ++ |.++..
T Consensus 280 ~l~~~~~~~~~~vli~gd~el~~~kl~~----~l~~--~~l~~a~~~el~~~~g~~~g~~~p~gl~~~i~~~iD~sl~r~ 353 (572)
T 2j3l_A 280 SVLFIADEEPVMVLVRGDHDVNDVKLKN----FLGA--DFLDEATEEDARRVLGAGFGSIGPVNVSEDVKIYADLAVQDL 353 (572)
T ss_dssp EEEEEETTEEEEEEEETTCCBCHHHHHH----HHTC--SCEEECCHHHHHHHHSSCTTSCCSTTCCTTCEEEEETTTTTC
T ss_pred EEEEEeCCcEEEEEeeCccccCHHHHHH----hhCC--CccccCCHHHHHHhhCCCccccCCccCCCCCcEEEehhhhcC
Confidence 1222211 1110 000000 00 1123333 22 111111
Q ss_pred -----------------Hhhhhhh------------------h-ceeeee--------cCCC----eeeeeEEEecCCCc
Q 006680 437 -----------------ALKRKFQ------------------C-ATLQLD--------FQLP----DRFNLGYSAEDEAK 468 (635)
Q Consensus 437 -----------------~l~r~~~------------------~-~t~~ld--------~~l~----~~~~L~Y~~~~e~~ 468 (635)
.+|+.|+ | +++++| |+|+ .+|++.|.+.+ |+
T Consensus 354 ~~~~~ga~~~~~~~~~~~~grd~~~~~~~el~~~~~G~~~~~~gg~~~~~~~ievg~~f~Lg~~ys~~~~~~~~~~~-g~ 432 (572)
T 2j3l_A 354 ANAIVGANEDGYHLTNVNPDRDFQPISYEDLRFVQEGDPSPDGNGVLAFTKGIEIGHIFKLGTRYSDAMGATVLDEN-GR 432 (572)
T ss_dssp CSEEEECSSTTEEEEEECBTTTBCCSEEECCBCCCTTCBCTTSSSBEEEEEEEEEEEEEEEETHHHHHHTCEEECTT-SC
T ss_pred CceEEccCCCCceeeccccccCcCcCcHHHHHHHhcCCcccccCCcceeccceEEEEEeccCcccccccCCEEECCC-Cc
Confidence 0133333 2 456665 6776 56788887765 55
Q ss_pred cccccccccceee-eHHHHHHHHHHHh----CCCCCCCCCCceEEEEecC---CCcHHHHHHHHHHHHHCCCEEEEeCCC
Q 006680 469 TERPVMIHRAILG-SVERMFAILLEHY----KGKWPFWLSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTD 540 (635)
Q Consensus 469 ~~~p~~i~~ai~G-gveR~~~~l~e~~----~g~~p~~lsp~qv~v~p~~---~~~~~~a~~v~~~L~~~G~~v~~d~~~ 540 (635)
...|+| +.+| |+||++++|+|++ ++.||.|++|.||+|+|++ ++..++|.+|++.||++|++|++|+++
T Consensus 433 ~~~p~~---g~~giGveRli~~l~e~~~d~~g~~~p~~~ap~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~gi~v~~d~~~ 509 (572)
T 2j3l_A 433 EKSVIM---GCYGIGVSRLLSAIVEQNADERGINWPTGIAPFDLHVVQMNVKDEYQTKLSQEVEAMMTEAGYEVLVDDRN 509 (572)
T ss_dssp EEECEE---EEEEEEHHHHHHHHHHHHEETTEECCCTTTSSCSEEEEESCTTCHHHHHHHHHHHHHHHHTTCCEEEECSS
T ss_pred EEeeee---eccccCHHHHHHHHHHhcCcccCcccCCCcCCeEEEEEecCCCCHHHHHHHHHHHHHHHhCCCeEEEeCCC
Confidence 567876 3456 9999999999987 3689999999999999998 678899999999999999999999998
Q ss_pred CCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccH
Q 006680 541 RKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSI 620 (635)
Q Consensus 541 ~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~ 620 (635)
+++++| +++|++.|+||++|||++| ++|+|+||+|++++|..+++
T Consensus 510 ~~~g~k----------------------------------~~~a~~~g~p~~iivG~~e-~~~~v~vk~~~~~~q~~v~~ 554 (572)
T 2j3l_A 510 ERAGVK----------------------------------FADADLIGCPIRITVGKKA-VDGVVEVKIKRTGEMLEVRK 554 (572)
T ss_dssp CCHHHH----------------------------------HHHHHHHCCSEEEEECGGG-GGTEEEEEETTTCCEEEEEH
T ss_pred CCHhHH----------------------------------HHHHHhcCCCEEEEEcccc-cCCeEEEEEcCCCcEEEEeH
Confidence 999999 9999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 006680 621 EDLLKHFKEKLEA 633 (635)
Q Consensus 621 e~l~~~~~~~~~~ 633 (635)
+++++.++ +++.
T Consensus 555 ~~l~~~l~-~~~~ 566 (572)
T 2j3l_A 555 EELESTLS-ILMN 566 (572)
T ss_dssp HHHHHHHH-HHCC
T ss_pred HHHHHHHH-HHhc
Confidence 99999998 7654
No 13
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=100.00 E-value=4.8e-37 Score=341.74 Aligned_cols=251 Identities=20% Similarity=0.356 Sum_probs=216.0
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceee-ecCEEEE-ecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIF-CRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~-Q~d~~if-~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
.+|+++|++++++|++||+|.++ .+||+|+|||+ |.|+|+| |.++++++|+..+++++.++|+.||++|.+.+++++
T Consensus 151 ~s~~~LPlr~~q~g~~fR~E~~~-~rGl~R~REF~~q~e~~~~~~~~e~a~~e~~~~l~~~~~i~~~Lgl~~~~~~~~~~ 229 (501)
T 1nj1_A 151 RSHTDLPMRFYQVVNTFRYETKH-TRPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPW 229 (501)
T ss_dssp CBTTTCCEEEEEEEEEECCCCSC-CBTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTT
T ss_pred cccccCCEEEEeecCEeeCCCCC-CCCCceeEEEeeeeeEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 38899999999999999999984 46999999999 9999975 555669999999999999999999999999998887
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e~ 467 (635)
++++|...+|+ + +..+.+ |+.++++|++ ++.+.+.+||+.|.+++ +
T Consensus 230 e~~~~a~~~~d------------------i------------e~~l~~--g~~~ei~t~~~lg~~~a~~~~~ry~~~~-g 276 (501)
T 1nj1_A 230 DKFPGSEYTVA------------------F------------DTLMPD--GKTLQIGTVHNLGQTFARTFEIKFETPE-G 276 (501)
T ss_dssp TSCTTCSEEEE------------------E------------EEECTT--SCEEEEEEEEEEETHHHHHHTCEEECTT-S
T ss_pred hhcCCcccceE------------------E------------EEEcCC--CCEEEEEEEEeccccchhhcCeEEECCC-C
Confidence 77777655432 1 111112 5678888886 88888999999998865 4
Q ss_pred ccccccccccceee-eHHHHHHHHHHHhC---C-CCCCCCCCceEEEEec-C-C---CcHHHHHHHHHHHHHCCCEEEEe
Q 006680 468 KTERPVMIHRAILG-SVERMFAILLEHYK---G-KWPFWLSPRQAIVCPV-S-E---KSQPYALQVRDHIYRAGYYVDVD 537 (635)
Q Consensus 468 ~~~~p~~i~~ai~G-gveR~~~~l~e~~~---g-~~p~~lsp~qv~v~p~-~-~---~~~~~a~~v~~~L~~~G~~v~~d 537 (635)
+... +|++.+| | ||++++|+|++. | .||.|++|.||+|+|+ + + +..++|.+|++.|+++|++|++|
T Consensus 277 ~~~~---~h~~g~Gig-eRli~aliE~~~d~~Gl~~P~~laP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D 352 (501)
T 1nj1_A 277 DHEY---VHQTCYGLS-DRVIASVIAIHGDESGLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLD 352 (501)
T ss_dssp CEEE---CEEEEEEEC-THHHHHHHHHTCCSSSEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CEEe---eeeccccHH-HHHHHHHHHHcCcccCccCCccccCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4332 4665666 5 999999999875 3 7999999999999999 5 4 58899999999999999999999
Q ss_pred CCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceec
Q 006680 538 TTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSN 617 (635)
Q Consensus 538 ~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~ 617 (635)
+++.++++| +++|++.|+||+||||++|+++|+|+||+|+++++..
T Consensus 353 ~~~~s~g~k----------------------------------~~~a~~~G~p~~iiiG~~e~~~~~V~vr~r~t~eq~~ 398 (501)
T 1nj1_A 353 DRDIRAGRK----------------------------------YYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVT 398 (501)
T ss_dssp CCSSCHHHH----------------------------------HHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEE
T ss_pred CCCCCHHHH----------------------------------HHHHHhcCCCEEEEECcchhhCCEEEEEECCCCceEE
Confidence 999999999 9999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHHh
Q 006680 618 MSIEDLLKHFKEKLEA 633 (635)
Q Consensus 618 ~~~e~l~~~~~~~~~~ 633 (635)
++++++++.+++++++
T Consensus 399 v~~~el~~~l~~~l~~ 414 (501)
T 1nj1_A 399 ADLQGIEETLRELMKD 414 (501)
T ss_dssp EETTTHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHHHHH
Confidence 9999999999887764
No 14
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Probab=100.00 E-value=1.9e-36 Score=337.18 Aligned_cols=274 Identities=21% Similarity=0.187 Sum_probs=224.7
Q ss_pred hhhhhcc-cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 006680 307 KRLKHAF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (635)
Q Consensus 307 ~~L~esy-relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~l 384 (635)
.....+| +++|++++++|.+||+|.++ ..||+|+|||+|+|+|+||.++++.+|+..+++++..+|+.||++ +.+.+
T Consensus 198 ~~~~~sy~r~LP~rl~qig~~FR~E~~p-r~GL~R~REF~q~d~~~f~~~e~~~~~~~~~i~~~~~i~~~LGl~~~~v~~ 276 (505)
T 1ati_A 198 KNVLDATSRKLGFGIAQIGKAFRNEITP-RNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVP 276 (505)
T ss_dssp HHHHHHHTCCSSEEEEEEEEEEBCCSSC-CTGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHhcCCCCCEEEEEeeceeeCCCCC-CCCCCcccceEEeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 4556688 89999999999999999764 489999999999999999999999988999999999999999998 66888
Q ss_pred ccCC-CCcC-CChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHH-hhhhhhhceeeeecCCCeeeeeEE
Q 006680 385 STRP-EKYL-GDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDA-LKRKFQCATLQLDFQLPDRFNLGY 461 (635)
Q Consensus 385 s~r~-~~~l-g~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~-l~r~~~~~t~~ld~~l~~~~~L~Y 461 (635)
++++ +++. |..++|+. +++... .|.. ..|..+++..++....+ .+..+ .+.++|++.+.++++.|
T Consensus 277 ~~~~~~~~~~~~~~~~d~------E~~~p~--~~~e--~~g~~~~~d~~L~~~~~~~~~~~--~~~~~~~n~~~~~~~~y 344 (505)
T 1ati_A 277 YQQPPESSAHYAKATVDI------LYRFPH--GSLE--LEGIAQRTDFDLGSHTKDQEALG--ITARVLRNEHSTQRLAY 344 (505)
T ss_dssp EECCTTTSCTTCSEEEEE------EEEETT--EEEE--EEEEEECTTHHHHHHCSSTTTTT--CCSCCCCCSCCCSCCCE
T ss_pred CCCChHhhhcccHHHHhH------HhhcCC--CCcc--chhhhcccceecchhhccccccc--eeeeecccccceeEEEE
Confidence 8875 4443 67777743 122211 1222 23455777665432211 12222 46778999999999999
Q ss_pred EecCCCccc-cccccccceeeeHHHHHHHHHHHh-------CC------CCCCCCCCceEEEEecCC---CcHHHHHHHH
Q 006680 462 SAEDEAKTE-RPVMIHRAILGSVERMFAILLEHY-------KG------KWPFWLSPRQAIVCPVSE---KSQPYALQVR 524 (635)
Q Consensus 462 ~~~~e~~~~-~p~~i~~ai~GgveR~~~~l~e~~-------~g------~~p~~lsp~qv~v~p~~~---~~~~~a~~v~ 524 (635)
.+++ ++.. .|++|+ .+.|+||++++|+|++ +| +||+|++|.||+|+|+++ +..++|.+|+
T Consensus 345 ~d~~-g~~~y~p~vig--~s~GieRli~alle~~~~~~~~~~gd~~~gl~~p~~laP~~v~Vip~~~~~~~~~~~a~~l~ 421 (505)
T 1ati_A 345 RDPE-TGKWFVPYVIE--PSAGVDRGVLALLAEAFTREELPNGEERIVLKLKPQLAPIKVAVIPLVKNRPEITEYAKRLK 421 (505)
T ss_dssp ECSS-SCCEECCEEEE--EEEEHHHHHHHHHHHHEEEEECTTSCEEEEECCCGGGCSCSEEEEESCSSCHHHHHHHHHHH
T ss_pred EcCC-CCeeecceEEE--EeeEHHHHHHHHHHHHhhhcccccccccccccCCcccCCceEEEEEcCCccHHHHHHHHHHH
Confidence 9876 4333 787776 3458899999999875 23 599999999999999987 6899999999
Q ss_pred HHHHHCC-CEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccc--
Q 006680 525 DHIYRAG-YYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAK-- 601 (635)
Q Consensus 525 ~~L~~~G-~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~-- 601 (635)
+.|+++| ++|++|++ ++++|| +++|++.|+||++|||++|++
T Consensus 422 ~~Lr~~G~i~v~~D~~-~sig~k----------------------------------~~~ad~~g~p~~iivG~~el~~~ 466 (505)
T 1ati_A 422 ARLLALGLGRVLYEDT-GNIGKA----------------------------------YRRHDEVGTPFAVTVDYDTIGQS 466 (505)
T ss_dssp HHHHTTCSSCEEECCC-SCHHHH----------------------------------HHHHHHTTCSEEEEECHHHHTCC
T ss_pred HHHhccCCEEEEECCC-CCHHHH----------------------------------HHHHHHCCCCEEEEEChHHhhhc
Confidence 9999999 99999998 899999 999999999999999999999
Q ss_pred -------cCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 602 -------SGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 602 -------~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+|+|+||+|++++|..++++++++.+++++
T Consensus 467 ~~~~~~~~g~V~vr~r~t~~q~~v~~~el~~~l~~~l 503 (505)
T 1ati_A 467 KDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERL 503 (505)
T ss_dssp TTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred cccccccCCEEEEEECCCCceEEEEHHHHHHHHHHHh
Confidence 999999999999999999999999998765
No 15
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*
Probab=100.00 E-value=4.8e-37 Score=337.78 Aligned_cols=262 Identities=15% Similarity=0.114 Sum_probs=206.3
Q ss_pred cCChhhhhhccc-ccceEEeeeccccc---cccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCC
Q 006680 303 YPDKKRLKHAFA-ELPLRLADFGVLHR---NEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF 378 (635)
Q Consensus 303 fp~~~~L~esyr-elPlrv~~vG~lnR---~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~ 378 (635)
|..-+....+|+ +||++++++|.+|| +|.++ ..||+|+|||+|+|+|+||.++++.+++..+++++..+|..||+
T Consensus 148 ~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~-~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~~~~~~~lgi 226 (454)
T 1g5h_A 148 LEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQT-PSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAM 226 (454)
T ss_dssp HHTHHHHHHHTTTBSCEEEEEEEEEEEEEC----------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhhhHhhcccCCCEEEEEeeeeccCCcccccC-CCCccccCceehhheEEEeCHhhHHHHHHHHHHHHHHHHHHcCC
Confidence 334455556777 99999999999999 69887 69999999999999999999999999999999999999999999
Q ss_pred e-EEEEEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccc--cchhHHHHHHhhhhhhhceeeeecCCCe
Q 006680 379 T-YELKLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYG--PKIDISVSDALKRKFQCATLQLDFQLPD 455 (635)
Q Consensus 379 ~-~~l~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~g--pkid~~~~d~l~r~~~~~t~~ld~~l~~ 455 (635)
+ ..++++. +|+.+ ++...++++....|.++++| ++.|+.+. .+| .+.
T Consensus 227 ~~~~~r~~~----------~~~~~------a~~~~~ie~~~p~g~~e~~g~~~~td~~l~-----~~~---------~~s 276 (454)
T 1g5h_A 227 SPSNFSSAD----------CQDEL------GRKGSKLYYSFPWGKEPIETLWNLGDQELL-----HTY---------PGN 276 (454)
T ss_dssp SGGGEEEEE----------EECTT------SCEEEEEEEEETTEEEEEEEEEEEESHHHH-----HHS---------TTC
T ss_pred CceeEEecC----------CHHHH------HhcCCCcEEecCCCceEEEEecCCCHHHHH-----hcc---------CCc
Confidence 7 3333322 22211 12334455566667777776 55554432 223 256
Q ss_pred eeeeEEEecCCCccccccccccceeeeHHHHH-HHHHHHhC--------C--------CCCCCCCCceEEEE-ecC--CC
Q 006680 456 RFNLGYSAEDEAKTERPVMIHRAILGSVERMF-AILLEHYK--------G--------KWPFWLSPRQAIVC-PVS--EK 515 (635)
Q Consensus 456 ~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~-~~l~e~~~--------g--------~~p~~lsp~qv~v~-p~~--~~ 515 (635)
+|++.|.++ ++..+|+|||+ ++|+||++ ++|.+++. | +||+|++|.||+|+ |++ ++
T Consensus 277 ~~~l~y~d~--~~~~~P~vi~~--s~Gv~R~i~aile~~~~~~~~~~~~g~d~~r~~l~~P~~lAP~qV~Ii~~~~~~e~ 352 (454)
T 1g5h_A 277 VSTIQGRDG--RKNVVPCVLSV--SGDVDLGTLAYLYDSFQLAENSFARKKSLQRKVLKLHPCLAPIKVALDVGKGPTVE 352 (454)
T ss_dssp GGGSCEEET--TEEECCEEEEE--EEEHHHHHHHHHHHHEEC------------CCEECCCTTTCSCCEEEEECSSCHHH
T ss_pred eeeEEEECC--CCcEeeEEEeC--cccHHHHHHHHHHHhcchhhcccccCCcccceeEecCcccCCCeEEEEEeCCCcHH
Confidence 689999875 44678999996 58999997 55555554 5 89999999999999 887 67
Q ss_pred cHHHHHHHHHHHHHCCCEEE--EeCC-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEE
Q 006680 516 SQPYALQVRDHIYRAGYYVD--VDTT-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFI 592 (635)
Q Consensus 516 ~~~~a~~v~~~L~~~G~~v~--~d~~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~ 592 (635)
..++|.+|++.|+++|++|+ +|++ +.+++|| +++|++.|+||+
T Consensus 353 ~~~~A~~l~~~Lr~~Gi~v~~~~Ddr~~~sigkk----------------------------------~r~Ad~~GiP~~ 398 (454)
T 1g5h_A 353 LRQVCQGLLNELLENGISVWPGYSETVHSSLEQL----------------------------------HSKYDEMSVLFS 398 (454)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHH----------------------------------HHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCCCCCCHHHH----------------------------------HHHHHHcCCCEE
Confidence 89999999999999999996 8986 8999999 999999999999
Q ss_pred EEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHh
Q 006680 593 LVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 593 lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~ 633 (635)
||||++|+++|+|+||+|++++|..++++++++.+++++++
T Consensus 399 IiVG~~Ele~g~VtvR~r~t~eq~~v~l~el~~~l~~~l~~ 439 (454)
T 1g5h_A 399 VLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLAS 439 (454)
T ss_dssp EEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHH
T ss_pred EEECcchhhCCEEEEEECCCCcEEEEEHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999887764
No 16
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=329.03 Aligned_cols=259 Identities=14% Similarity=0.107 Sum_probs=202.9
Q ss_pred hhhhhccc-ccceEEeeecccccccc--CCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEE
Q 006680 307 KRLKHAFA-ELPLRLADFGVLHRNEA--SGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YEL 382 (635)
Q Consensus 307 ~~L~esyr-elPlrv~~vG~lnR~E~--~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l 382 (635)
+....+|+ +||++++++|.+||+|. .+..+||+|+|||+|+|+|+||.++++++|+..++..+..+|+.||++ ..+
T Consensus 162 k~~~~s~r~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~~~~ 241 (459)
T 3ikl_A 162 VNCLDLVNKRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSPSNF 241 (459)
T ss_dssp TTTTGGGTTBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSGGGE
T ss_pred hhhhhhccccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCChhhE
Confidence 44456888 99999999999999997 567799999999999999999999999999999999999999999996 333
Q ss_pred EEccCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCccccc--chhHHHHHHhhhhhhhceeeeecCCCeeeeeE
Q 006680 383 KLSTRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGP--KIDISVSDALKRKFQCATLQLDFQLPDRFNLG 460 (635)
Q Consensus 383 ~ls~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gp--kid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~ 460 (635)
+++..+.+ . +++..++++....|.++++|+ +.|+.+.+ .+ .+++++
T Consensus 242 r~~~~~~e----e------------A~~~~DiE~~~p~G~~E~~g~sn~tDfqL~~----~~------------~~~~~~ 289 (459)
T 3ikl_A 242 SSSDCQDE----E------------GRKGNKLYYNFPWGKELIETLWNLGDHELLH----MY------------PGNVSK 289 (459)
T ss_dssp EEEEECCS----S------------SSCEEEEEEECSSCEEEEEEEEEEETHHHHH----HS------------CSCSSS
T ss_pred EEeecCch----H------------HHhhcCeEEEcCCceEEEeeeeccchhhhhc----cc------------cccCce
Confidence 44333311 0 222344445556677888887 66766543 11 123444
Q ss_pred EEecCCCccccccccccceeeeHHHHHHHHH-HHhC----------------CCCCCCCCCceEEEEecC---CCcHHHH
Q 006680 461 YSAEDEAKTERPVMIHRAILGSVERMFAILL-EHYK----------------GKWPFWLSPRQAIVCPVS---EKSQPYA 520 (635)
Q Consensus 461 Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~-e~~~----------------g~~p~~lsp~qv~v~p~~---~~~~~~a 520 (635)
|...+..+...|+||| ..+|++|++++++ ++|. ++||+|++|.||.|++.. ++..++|
T Consensus 290 ~~~~dg~~k~~P~vi~--~s~Gv~R~~~AiLe~~~de~~~~~~~~~~~~R~vl~lP~~LAP~qV~Iii~~~~~e~~~~~A 367 (459)
T 3ikl_A 290 LHGRDGRKNVVPCVLS--VNGDLDRGMLAYLYDSFQLTENSFTRKKNLHRKVLKLHPCLAPIKVALDVGRGPTLELRQVC 367 (459)
T ss_dssp SCCBSSSCBCCCEEEE--EEEEHHHHHHHHHHTTCC-------------CCCCCCCTTTCSCCEEEEESSCCSTTHHHHH
T ss_pred eEccCCCeeeeeEEEE--ecccHHHHHHHHHHHHhhhccccccccccccceEEEeCcccCCceEEEEeCCCCCHHHHHHH
Confidence 4444423456799886 6779999765554 4464 689999999999999442 6789999
Q ss_pred HHHHHHHHHCCCEEE--EeCC-CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcc
Q 006680 521 LQVRDHIYRAGYYVD--VDTT-DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGE 597 (635)
Q Consensus 521 ~~v~~~L~~~G~~v~--~d~~-~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~ 597 (635)
.+|++.|+++|++|+ +|++ +.++|+| +++|++.|+||+||||+
T Consensus 368 ~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK----------------------------------~r~Ad~iGiPy~IiVG~ 413 (459)
T 3ikl_A 368 QGLFNELLENGISVWPGYLETMQSSLEQL----------------------------------YSKYDEMSILFTVLVTE 413 (459)
T ss_dssp HHHHHHHHHTSCCEECGGGSSSCCTTHHH----------------------------------HHHHGGGTCSEEEEECT
T ss_pred HHHHHHHHHCCCeEEEeecCCcCCCHHHH----------------------------------HHHHHHcCCCEEEEECc
Confidence 999999999999999 7877 8999999 99999999999999999
Q ss_pred cccccCeEEEEEcCCCceecccHHHHHHHHHHHHHh
Q 006680 598 EEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 598 ~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~ 633 (635)
+|+++|+|+||+|++++|..|+++++++.|++++++
T Consensus 414 kEle~g~VtVR~Rdtgeq~~v~ldeli~~l~~~i~~ 449 (459)
T 3ikl_A 414 TTLENGLIHLRSRDTTMKEMMHISKLKDFLIKYISS 449 (459)
T ss_dssp TSTTSSEEEEEETTTCCCCCEETTHHHHHHHHHHHH
T ss_pred hhhhCCEEEEEECCCCceEEEEHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999988764
No 17
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=100.00 E-value=5.6e-36 Score=330.67 Aligned_cols=263 Identities=19% Similarity=0.266 Sum_probs=207.6
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~ 389 (635)
+| ++|+|++++|++||+|+++. +|+|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ |.++||+++.
T Consensus 126 ~~-~lP~r~~~~g~vfR~E~~~~----gR~ReF~Q~d~ei~g~~~~~adaE---vi~l~~~~l~~lGl~~~~i~in~~g~ 197 (467)
T 4e51_A 126 LY-DGPKRLWYIGPMFRHERPQR----GRYRQFHQVGVEALGFAGPDADAE---IVMMCQRLWEDLGLTGIKLEINSLGL 197 (467)
T ss_dssp TT-TSCEEEEEEEEEECCCCC-------CCSEEEEEEEEEETCCCSHHHHH---HHHHHHHHHHHHTCCCEEEEEEECCC
T ss_pred cc-CCCEEEEEEccEEccCCCCC----CCcCceEEEEEEEEeCCChHHHHH---HHHHHHHHHHHcCCCceEEEEeCCCc
Confidence 44 58999999999999999987 8999999999999999998 8888 999999999999995 9999998741
Q ss_pred ------------CcCCC----------------------------hhhHH--------------HHHHHHHHHHHHcCCC
Q 006680 390 ------------KYLGD----------------------------LATWE--------------KAEAALTEALNEFGKP 415 (635)
Q Consensus 390 ------------~~lg~----------------------------~~~~~--------------~a~~~l~~~l~~~g~~ 415 (635)
++++. .+.|+ ...+.|.++|+.+|++
T Consensus 198 ~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~l~~ld~k~~~~~~~l~~a~~l~~~l~~~~~~~l~~l~~~L~~~gi~ 277 (467)
T 4e51_A 198 AEERAAHRVELIKYLEQHADKLDDDAQRRLYTNPLRVLDTKNPALQEIVRNAPKLIDFLGDVSRAHFEGLQRLLKANNVP 277 (467)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGCCHHHHHHHTTCTHHHHTCCCGGGHHHHHTSCCGGGGCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhHHHHHHHHHHHHHHHhccCHHHHHHHHhchHHHhhccchhHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHcCCe
Confidence 11110 00010 1124566677777777
Q ss_pred cEEcCC---CCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHH
Q 006680 416 WQINEG---DGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLE 492 (635)
Q Consensus 416 ~~~~~g---~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e 492 (635)
|.++++ ..+||+|+|...+.+.+|+. ++++ .+-|||. |.... +...+|++ ++++|+||++++|.+
T Consensus 278 ~~~d~~lvRgl~YYtg~vFe~~~~~~g~~---~tI~----~GGRYD~-Lv~~~-g~~~~Pav---Gfa~gleRl~~~l~~ 345 (467)
T 4e51_A 278 FTINPRLVRGLDYYNLTVFEWVTDKLGAQ---GTVA----AGGRYDP-LIEQL-GGKPTAAC---GWAMGIERILELLKE 345 (467)
T ss_dssp EEECTTCCCSCTTCCSEEEEEEECC-------CEEE----EEEECTH-HHHHT-TSSCCCEE---EEEEEHHHHHHHHHH
T ss_pred EEEcCccccCccccCCeEEEEEECCCCCc---ceec----CCCcHHH-HHHHh-CCCCCCce---eehHHHHHHHHHHHh
Confidence 777777 56778777776666655543 3443 3556654 33322 34567885 889999999999988
Q ss_pred HhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCC----CCCcCCCCCcccccccceeeeeehhhhhh
Q 006680 493 HYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT----DRKIQKKPNSFVHARSTYIEVVFSCWEEL 568 (635)
Q Consensus 493 ~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~----~~~l~kk~~~~~~~~~~~~~~~~~~~~~~ 568 (635)
+ |.+|. ++|.||+|+|++++..++|.++++.||++|++|++|.+ +++++||
T Consensus 346 ~--~~~~~-~~p~~V~Vip~~~~~~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq---------------------- 400 (467)
T 4e51_A 346 E--HLVPE-QEGVDVYVVHQGDAAREQAFIVAERLRDTGLDVILHCSADGAGASFKSQ---------------------- 400 (467)
T ss_dssp T--TCCCC-CCCCSEEEEECSHHHHHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHH----------------------
T ss_pred c--CCccc-CCCCeEEEEEcChHHHHHHHHHHHHHHHcCCeEEEEcccccccCCHHHH----------------------
Confidence 4 67776 78999999999988899999999999999999999998 8999999
Q ss_pred hcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCC-C------ceecccHHHHHHHHHHHH
Q 006680 569 VAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQ-G------DHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 569 ~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~-~------~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++|.++|+|+||+|++ + +|..++++++++.+++.+
T Consensus 401 ------------~~~A~~~g~~~~iiiG~~E~~~g~V~vk~~~~~~~~~~~~~q~~v~~~elv~~l~~~~ 458 (467)
T 4e51_A 401 ------------MKRADASGAAFAVIFGEDEVTNGTASVKPLRGTGDDGEKSVQQSVPVESLTEFLINAM 458 (467)
T ss_dssp ------------HHHHHHTTCSEEEEECHHHHHHTEEEEEEC---------CCCEEEEGGGHHHHHHHHH
T ss_pred ------------HHHHHHcCCCEEEEECcchhhCCeEEEEECCCCCCCCCcccceEEcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999 8 999999999999998877
No 18
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A
Probab=100.00 E-value=1.6e-33 Score=305.99 Aligned_cols=269 Identities=21% Similarity=0.252 Sum_probs=210.7
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~ 389 (635)
+|+++|+|++++|++||+|+++. +|.|||+|+|+|+||.+++ +++| ++.++.++|+.||++ +.+.+|+
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~~----gR~REf~Q~g~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~~~~i~i~~--- 165 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQK----GRYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLRRLKVKLSS--- 165 (421)
T ss_pred cccCCCeEEEEecCeecCCCCCC----CCcccEEEccEEEECCCChhhhHH---HHHHHHHHHHHcCCCceEEEEcC---
Confidence 45789999999999999998875 7999999999999999988 8888 899999999999998 9999966
Q ss_pred CcCCChhhHHHHHHHHHHHHHHc--C-----------CCcEE----cCCCCccc----ccchhHHHHH----Hhhhhhhh
Q 006680 390 KYLGDLATWEKAEAALTEALNEF--G-----------KPWQI----NEGDGAFY----GPKIDISVSD----ALKRKFQC 444 (635)
Q Consensus 390 ~~lg~~~~~~~a~~~l~~~l~~~--g-----------~~~~~----~~g~~af~----gpkid~~~~d----~l~r~~~~ 444 (635)
+|+.+++..+.+.|.+++... + .++.+ +++..+++ +|++...+.+ .+++.+++
T Consensus 166 --~g~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~l~~~~~~ 243 (421)
T 1h4v_B 166 --VGDPEDRARYNAYLREVLSPHREALSEDSKERLEENPMRILDSKSERDQALLKELGVRPMLDFLGEEARAHLKEVERH 243 (421)
T ss_pred --CCchhhHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcchHhhhcccHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHH
Confidence 466666555444444444321 0 11111 11224454 5777654322 23333332
Q ss_pred -----ceeeeecCCCeeeeeEEEecCC------C-ccccccc--------c------ccceee---eHHHHHHHHHHHhC
Q 006680 445 -----ATLQLDFQLPDRFNLGYSAEDE------A-KTERPVM--------I------HRAILG---SVERMFAILLEHYK 495 (635)
Q Consensus 445 -----~t~~ld~~l~~~~~L~Y~~~~e------~-~~~~p~~--------i------~~ai~G---gveR~~~~l~e~~~ 495 (635)
.++++|++++. +++|||+.. + +...|++ + |+...| |+||++++|.|+
T Consensus 244 l~~~g~~i~~D~~l~r--g~~YYtg~vFe~~~~~~g~~~~v~~GGRYd~l~~~fgg~~~pa~Gf~igieRl~~~l~e~-- 319 (421)
T 1h4v_B 244 LERLSVPYELEPALVR--GLDYYVRTAFEVHHEEIGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAE-- 319 (421)
T ss_pred HHHcCCeEEEeccccc--chhhhcCeEEEEEecCCCCcCccccCCcHHHHHHHhCCCCCCeEEEeecHHHHHHHHHhc--
Confidence 37889999885 888998761 0 1112332 1 223345 999999999984
Q ss_pred CCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccc
Q 006680 496 GKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIY 575 (635)
Q Consensus 496 g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (635)
|.+|+|.+|.||+|+|++++..++|.++++.||++ ++|++|++++++++|
T Consensus 320 ~~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~-i~v~~d~~~~~~~~~----------------------------- 369 (421)
T 1h4v_B 320 GFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKG----------------------------- 369 (421)
T ss_pred CcCCCCCCCCeEEEEECChHHHHHHHHHHHHHHhc-CEEEEecCCCCHHHH-----------------------------
Confidence 66666889999999999988899999999999999 999999998999999
Q ss_pred cchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 576 PIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 576 ~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.+++++
T Consensus 370 -----~~~a~~~g~p~~iivG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~l 420 (421)
T 1h4v_B 370 -----LEEALKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 420 (421)
T ss_pred -----HHHHHhCCCCEEEEECchHhhcCcEEEEECCCCCceEECHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998764
No 19
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=100.00 E-value=8.7e-36 Score=328.33 Aligned_cols=273 Identities=17% Similarity=0.238 Sum_probs=201.5
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCeEEEEEccCCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRPE 389 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~~ 389 (635)
.+|+++|++++++|.+||+|.++ ..||+|+|||+|+|+|+||.++. +++|+..+++++.++|+.||++|.+.++++..
T Consensus 143 ~s~~~lP~rl~~ig~~fR~E~~p-~~Gl~R~REF~q~d~~~f~~~~~~ad~e~~~~~~~~~~i~~~lGl~~~~~~~~~g~ 221 (458)
T 2i4l_A 143 KSYKSLPLNLYHIQWKFRDEQRP-RFGVMRGREFLMKDAYSFDVDEAGARKSYNKMFVAYLRTFARMGLKAIPMRAETGP 221 (458)
T ss_dssp CBGGGCSEEEEEEEEEECCCSSC-BTGGGBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTTCCEEEEECCCCS
T ss_pred hhccccCeeeEEecCEeeCCCCC-CCCcccccceEEeEEEEEECCHHHHHHHHHHHHHHHHHHHHHcCCceEEEEccccc
Confidence 37889999999999999999665 38999999999999999997655 99999889999999999999999998877631
Q ss_pred ------------CcCCCh----------hhHHHHHHH----HHHHHHHcCCCcEEc----CCCCc---ccccchhHHHHH
Q 006680 390 ------------KYLGDL----------ATWEKAEAA----LTEALNEFGKPWQIN----EGDGA---FYGPKIDISVSD 436 (635)
Q Consensus 390 ------------~~lg~~----------~~~~~a~~~----l~~~l~~~g~~~~~~----~g~~a---f~gpkid~~~~d 436 (635)
...|+. +.|+.++.. +.++++..+.-+..+ .|+.+ ++++++++.-..
T Consensus 222 ~gg~~s~e~~~l~~~ged~i~~~~~~~~~n~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~rgl 301 (458)
T 2i4l_A 222 IGGDLSHEFIVLAETGESGVYIDRDVLNLPVPDENVDYDGDLTPIIKQWTSVYAATEDVHEPARYESEVPEANRLNTRGI 301 (458)
T ss_dssp SCSSCEEEEEEECTTCSEEEEEEGGGGGCCCCCTTCCTTSCCHHHHHHHHHSCEEETTTCCTTHHHHHSCTTTEEEEEEE
T ss_pred cCCccchhhhhhhhcCcceEEecccccccCHHHHhccccHhHHHHHhcCchhhhcChhhcccccccCCCCCcCceeeeee
Confidence 012321 122222111 222222211001111 23321 344433321111
Q ss_pred HhhhhhhhceeeeecCCCeeeeeEEEecCCCccccccccccceee-eHHHHHHHHHHHh----CCCCCCCCCCceEEEEe
Q 006680 437 ALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILG-SVERMFAILLEHY----KGKWPFWLSPRQAIVCP 511 (635)
Q Consensus 437 ~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~G-gveR~~~~l~e~~----~g~~p~~lsp~qv~v~p 511 (635)
+.|..|++ .-..+..+|..|.+.+ +...|++ ...+| |+||++++|+|++ ++.||.|++|.||+|+|
T Consensus 302 ~~G~iFel-----g~~~s~~~g~ry~~~~--G~~~p~~--~~gfgiGveRli~al~e~~~d~~g~~~p~~~ap~~v~vi~ 372 (458)
T 2i4l_A 302 EVGQIFYF-----GTKYSDSMKANVTGPD--GTDAPIH--GGSYGVGVSRLLGAIIEACHDDNGIIWPEAVAPFRVTILN 372 (458)
T ss_dssp EEEEEEEE-----ETHHHHHTTCEEECTT--SCEEECE--EEEEEEEHHHHHHHHHHHSEETTEECCCTTTCSCSEEEEE
T ss_pred ccCcEEEe-----cccccccCCcEEECCC--CCEeceE--EeeecccHHHHHHHHHHhhccccCCcCCcccCCceEEEEe
Confidence 12333332 2223556788886543 3345642 23445 9999999999986 45899999999999999
Q ss_pred cC---CCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcC
Q 006680 512 VS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQ 588 (635)
Q Consensus 512 ~~---~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~ 588 (635)
++ ++..++|.++++.|+++|++|++|+++.++++| +++|++.|
T Consensus 373 ~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k----------------------------------~~~ad~~g 418 (458)
T 2i4l_A 373 LKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAK----------------------------------FATADLIG 418 (458)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHH----------------------------------HHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHH----------------------------------HHHHHhcC
Confidence 96 567899999999999999999999998999999 99999999
Q ss_pred CcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHH
Q 006680 589 YNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHF 627 (635)
Q Consensus 589 ~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~ 627 (635)
+||++|||++|+++|+|+||+|+++++..++++++++.+
T Consensus 419 ~p~~iivG~~e~~~g~v~vr~r~~~~~~~v~~~~l~~~l 457 (458)
T 2i4l_A 419 IPWQIHVGPRGLAEGKVELKRRSDGARENLALADVVARL 457 (458)
T ss_dssp CSEEEEECHHHHTTTEEEEEETTTCCEEEEETTTTTCC-
T ss_pred CCEEEEECCchhhCCEEEEEECCCCcEEEEeHHHHHHhh
Confidence 999999999999999999999999999999999987654
No 20
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=1.8e-34 Score=315.29 Aligned_cols=264 Identities=19% Similarity=0.292 Sum_probs=211.4
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe--EEEEEccCC--C
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT--YELKLSTRP--E 389 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~--~~l~ls~r~--~ 389 (635)
++|+|++++|++||+|+++. +|.|||+|+|+|+||.+++ +++| ++.++.++|+.||++ |.+.+|++. +
T Consensus 97 ~lP~rl~~~g~vfR~erp~~----gR~REF~Q~d~ei~g~~~~~ad~E---~i~~~~~~l~~lgl~~~~~i~l~~~g~~~ 169 (434)
T 1wu7_A 97 QRPLRWYSFPKVWRYEEPQA----GRYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLQDIYEIRINSRKIME 169 (434)
T ss_dssp CSSEEEEECCEEECCCCSCS----SCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTTTTSEEEEEEEHHHHH
T ss_pred CCCeEEEEEcCeecCCCCCC----CCccceEEeeEEEEcCCChHhhHH---HHHHHHHHHHHcCCCCceEEEECChhhHH
Confidence 68999999999999998875 7999999999999999998 8888 789999999999997 999999984 2
Q ss_pred C---cCCChhhHHHHHHHHHHHHHH---------------cCCCcEEcCCCCccc--ccchhHHHH-------HHhhhhh
Q 006680 390 K---YLGDLATWEKAEAALTEALNE---------------FGKPWQINEGDGAFY--GPKIDISVS-------DALKRKF 442 (635)
Q Consensus 390 ~---~lg~~~~~~~a~~~l~~~l~~---------------~g~~~~~~~g~~af~--gpkid~~~~-------d~l~r~~ 442 (635)
. .+| .+.|. .|.+++++ .+.+...+++.++|+ +|+++. +. +++.+..
T Consensus 170 ~~~~~~g-~~~~~----~l~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~l~ 243 (434)
T 1wu7_A 170 EIIGGMT-SSDPF----SVFSIIDRYHKISREEFVDQLRSAGIGEDGVSMIADLCSGTRGIDE-MARITGKSSEEIARMA 243 (434)
T ss_dssp HHHHTTC-SSCHH----HHHHHHHTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHHSCBCHHH-HHHHTTCCCHHHHHHH
T ss_pred HHHHHhC-cHhHH----HHHHHHHHHhccchHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHH-HHHHHhhHHHHHHHHH
Confidence 2 234 55553 33444443 333333334445666 788765 54 4555433
Q ss_pred hh---------ceeeeecCCCeeeeeEEEecC------CCccccccc--------cc------cceee---eHHHHHHHH
Q 006680 443 QC---------ATLQLDFQLPDRFNLGYSAED------EAKTERPVM--------IH------RAILG---SVERMFAIL 490 (635)
Q Consensus 443 ~~---------~t~~ld~~l~~~~~L~Y~~~~------e~~~~~p~~--------i~------~ai~G---gveR~~~~l 490 (635)
++ .++++|+.++. +++|||+. ..+...|++ ++ +...| |+||++++|
T Consensus 244 ~~~~~l~~~g~~~i~~D~~l~r--gldYYtg~vFe~~~~~g~~~~v~~GGRYD~li~~fgg~~~pa~Gf~igveRl~~~l 321 (434)
T 1wu7_A 244 AVEDLLASYGVKNVRYDFSIVR--GLSYYTGIVFEAYDRSGQFRAILGGGRYDNLASLMSGESVPAVGFGMGDAVISLLL 321 (434)
T ss_dssp HHHHHHHHTTCCCCEECTTCCT--TTTTCSSEEEEEEETTSSCSCSSEEEECTTHHHHHHSCCCCEEEEEEEHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEECCCccc--CccccCCeEEEEEECCCCcCeeeecccHHHHHHHhCCCCCCeEEEEEcHHHHHHHH
Confidence 32 15899999886 78899875 111122332 11 23345 999999999
Q ss_pred HHHhCCCC-CCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhh
Q 006680 491 LEHYKGKW-PFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELV 569 (635)
Q Consensus 491 ~e~~~g~~-p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~ 569 (635)
.|+ |.| |. +|.||+|+|++++..++|.++++.||++|++|++|++++++++|
T Consensus 322 ~e~--~~~~p~--~p~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~----------------------- 374 (434)
T 1wu7_A 322 KRE--NVQIPR--EKKSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQ----------------------- 374 (434)
T ss_dssp HHT--TCCCCC--SSCEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHH-----------------------
T ss_pred Hhc--CCccCC--CCCcEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHH-----------------------
Confidence 995 688 86 78999999999889999999999999999999999998999999
Q ss_pred cccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 570 AGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 570 ~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.+++++
T Consensus 375 -----------~~~a~~~g~~~~iiiG~~e~~~g~v~vk~~~~~~~~~v~~~el~~~l~~~~ 425 (434)
T 1wu7_A 375 -----------LKYASAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQA 425 (434)
T ss_dssp -----------HHHHHHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHCC
T ss_pred -----------HHHHHHCCCCEEEEECchhhhcCeEEEEECCCCCeEEEcHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998765
No 21
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=100.00 E-value=1.6e-33 Score=306.25 Aligned_cols=270 Identities=17% Similarity=0.258 Sum_probs=194.9
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCC-e-EEEEEccCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGF-T-YELKLSTRP 388 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~-~-~~l~ls~r~ 388 (635)
+|+++|+|++++|++||+|+++. +|.|||+|+|+|+||.+++ +++| ++.++.++|+.||+ + |.+.+|++
T Consensus 96 ~~~~~P~rl~~~g~vfR~e~p~~----gR~Ref~Q~d~e~~g~~~~~ad~e---~i~~~~~~l~~lgl~~~~~i~i~~~- 167 (423)
T 1htt_A 96 LLYNQEQRLWYIGPMFRHERPQK----GRYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGISEHVTLELNSI- 167 (423)
T ss_dssp CSTTCCEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHTCGGGCEEEEEEC-
T ss_pred cccCCCeEEEEEcCEecCCCCCC----CccceeEEeeEEEECCCCchhhHH---HHHHHHHHHHHCCCCCCcEEEEcCC-
Confidence 46789999999999999998875 7999999999999999988 8888 78999999999999 5 99999774
Q ss_pred CCcCCChhhHHHHHHHHHHHHHH------------cC-CCcEE----cCCCCccc--ccchhHHHH-HHh---hhhhhh-
Q 006680 389 EKYLGDLATWEKAEAALTEALNE------------FG-KPWQI----NEGDGAFY--GPKIDISVS-DAL---KRKFQC- 444 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~------------~g-~~~~~----~~g~~af~--gpkid~~~~-d~l---~r~~~~- 444 (635)
|+.++...+.+.|.+++.. +. .++.+ +++..+++ +|++...+. +++ .+.++.
T Consensus 168 ----g~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~l~~~~~l~~~l~~~~~~~l~~~~~~l 243 (423)
T 1htt_A 168 ----GSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFAGLCKLL 243 (423)
T ss_dssp ----CCHHHHHHC---------------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred ----CChhhHHHHHHHHHHHHHHHHhccCHHHHHHHHhchhHhhhcccHHHHHHHhcchHHHhhhhHHHHHHHHHHHHHH
Confidence 4444332222222222211 00 01111 12345566 788765321 222 222221
Q ss_pred ----ceeeeecCCCeeeeeEEEecC--C----C-ccccccc--------cc------cceee---eHHHHHHHHHHHhCC
Q 006680 445 ----ATLQLDFQLPDRFNLGYSAED--E----A-KTERPVM--------IH------RAILG---SVERMFAILLEHYKG 496 (635)
Q Consensus 445 ----~t~~ld~~l~~~~~L~Y~~~~--e----~-~~~~p~~--------i~------~ai~G---gveR~~~~l~e~~~g 496 (635)
.++++|++++. +++|||+. | + +...|++ +| ....| |+||++++|.|+ |
T Consensus 244 ~~~g~~i~~D~~l~r--g~~YYtg~vFe~~~~~~g~~~~v~~GGRYD~l~~~fgg~~~pavGf~igveRl~~~l~e~--~ 319 (423)
T 1htt_A 244 ESAGIAYTVNQRLVR--GLDYYNRTVFEWVTNSLGSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAV--N 319 (423)
T ss_dssp HTTTCCCEECTTCCC--SSTTCCSEEEEEECC----CCEEEEEEECTTHHHHTTSCCCCEEEEEEEHHHHHHHHHHH--S
T ss_pred HHcCCeEEEcccccc--chHHHcCceEEEEeCCCCCcCCcCCCccHHHHHHHhCCCCCCeEEEEecHHHHHHHHHhc--C
Confidence 37889999885 78899875 1 0 1112322 11 12234 999999999996 5
Q ss_pred CCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHC--CCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhccccc
Q 006680 497 KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRA--GYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINI 574 (635)
Q Consensus 497 ~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~--G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (635)
.+|+|.+|.||+|+|++++..++|.++++.||++ |++|++|++++++++|
T Consensus 320 ~~~~~~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~~~Gi~v~~d~~~~~~~~~---------------------------- 371 (423)
T 1htt_A 320 PEFKADPVVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQ---------------------------- 371 (423)
T ss_dssp TTCCCCCSCSEEEEECSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHH----------------------------
T ss_pred cCCCCCCCCcEEEEEcCHHHHHHHHHHHHHHHcCCCCcEEEEeCCCCCHHHH----------------------------
Confidence 6666789999999999988999999999999999 9999999988999999
Q ss_pred ccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 575 YPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 575 ~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.+++++
T Consensus 372 ------~~~a~~~g~p~~iiiG~~e~~~~~v~vk~~~~~~~~~v~~~el~~~l~~~~ 422 (423)
T 1htt_A 372 ------FARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 422 (423)
T ss_dssp ------HHHHHHHTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred ------HHHHHHcCCCEEEEECchhhhcCeEEEEECCCCCceEEcHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999998764
No 22
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=100.00 E-value=2e-34 Score=312.80 Aligned_cols=262 Identities=22% Similarity=0.364 Sum_probs=190.6
Q ss_pred cc-cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 312 AF-AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 312 sy-relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
+| +++|+|++++|.+||+|+++. +|+|||+|+|+|+||.+++ ++.| ++.++.++|+.||++ +.+.+++
T Consensus 95 ~~~~~lP~r~~~~g~vfR~E~~~~----gR~reF~q~~~e~~~~~~~~~d~e---~i~~~~~~l~~lgl~~~~i~l~~-- 165 (420)
T 1qe0_A 95 QGNPNQPIKLYYNGPMFRYERKQK----GRYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGLKHLKLVINS-- 165 (420)
T ss_dssp GGCSSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTCCCEEEEEEE--
T ss_pred cccCCCCeEEEEecCEeecCCCcC----CCcccEEEeeEEEECCCCchhHHH---HHHHHHHHHHHcCCCceEEEEcc--
Confidence 66 789999999999999998876 8999999999999999998 7877 899999999999998 9999966
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHc--C-----------CCcEE----cCCCCccc--ccchhH-----------HHHHHh
Q 006680 389 EKYLGDLATWEKAEAALTEALNEF--G-----------KPWQI----NEGDGAFY--GPKIDI-----------SVSDAL 438 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~--g-----------~~~~~----~~g~~af~--gpkid~-----------~~~d~l 438 (635)
+|..++.....+.|.+++... . .++.+ ++++..+. +|++.. .+.+.+
T Consensus 166 ---~g~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~~~~~~l~~~~~~~~~~~~~a~~l~~~l~~~~~~~l~~l~~~l 242 (420)
T 1qe0_A 166 ---VGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILDCKVDRDKEAIKTAPRITDFLNEESKAYYEQVKAYL 242 (420)
T ss_dssp ---CCCHHHHHHHHHHHHHHHGGGGGGSCHHHHHTTTTCGGGGC------------CCCCGGGCCCTTHHHHHHHHHHHH
T ss_pred ---cCchhhHHHHHHHHHHHHHHHHhhhCHHHHHHHHhcchhhhcccchhHHHHHhhchHHHHHhhHHHHHHHHHHHHHH
Confidence 455555554444444444321 0 01110 00111111 122211 111122
Q ss_pred hhhhhhceeeeecCCCeeeeeEEEecCC------------------------------CccccccccccceeeeHHHHHH
Q 006680 439 KRKFQCATLQLDFQLPDRFNLGYSAEDE------------------------------AKTERPVMIHRAILGSVERMFA 488 (635)
Q Consensus 439 ~r~~~~~t~~ld~~l~~~~~L~Y~~~~e------------------------------~~~~~p~~i~~ai~GgveR~~~ 488 (635)
+. +. ..+.+|+.+.. +++|||+.- ++...|+| +.++|+||+++
T Consensus 243 ~~-~g-i~~~~d~~l~r--g~~yYtg~vfe~~~~~~~~~g~~~~i~~GgRYd~l~~~~g~~~~P~v---g~~igveRl~~ 315 (420)
T 1qe0_A 243 DD-LG-IPYTEDPNLVR--GLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGI---GFALSIERLLL 315 (420)
T ss_dssp HH-HT-CCCEECTTCCC--CCTTEEEEEEEEEEECTTSTTSEEEEEEEEEEESHHHHTTCCCCEEE---EEEEEHHHHHH
T ss_pred HH-cC-CeEEECccccc--chhhhcCeEEEEEEcCCCCCCCcCccccCccHHHHHHHhCCCCCCEE---EEEecHHHHHH
Confidence 11 11 12345544332 444544330 12346763 77789999999
Q ss_pred HHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhh
Q 006680 489 ILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEEL 568 (635)
Q Consensus 489 ~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~ 568 (635)
+| |++++.||. ++|.||+|+|++++..++|.++++.||++|++|++|+++.++++|
T Consensus 316 ~l-e~~~~~~p~-~~p~~v~i~~~~~~~~~~a~~l~~~Lr~~Gi~v~~d~~~~~~~~~---------------------- 371 (420)
T 1qe0_A 316 AL-EEEGIELDI-EENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQ---------------------- 371 (420)
T ss_dssp HH-HHTTCCCCC-CCCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHH----------------------
T ss_pred HH-HhcCCCCCC-CCCCeEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEecCCCCHHHH----------------------
Confidence 87 777778998 899999999998778899999999999999999999988999999
Q ss_pred hcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHH
Q 006680 569 VAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFK 628 (635)
Q Consensus 569 ~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~ 628 (635)
+++|++.|+||++|||++|.++|+|+||+|+++++..++++++++.++
T Consensus 372 ------------~~~a~~~g~p~~iiig~~e~~~~~v~vk~~~~~~~~~v~~~~l~~~l~ 419 (420)
T 1qe0_A 372 ------------MKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFK 419 (420)
T ss_dssp ------------HHHHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHH
T ss_pred ------------HHHHHHcCCCEEEEECcchhhcCeEEEEECCCCCeEEEcHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998875
No 23
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=99.98 E-value=1.3e-32 Score=303.52 Aligned_cols=273 Identities=18% Similarity=0.277 Sum_probs=201.2
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-h--HHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-I--KDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~--~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
+.++|+|++++|++||+|+++. +|+|||+|+|+|+||.+++ + |+| ++.++.++|+.||++ +.++|||+.
T Consensus 116 ~~~~p~r~~y~g~vfR~e~~~~----gr~Ref~Q~g~ei~G~~~~~a~~DaE---vi~l~~~~l~~lgl~~~~i~in~~~ 188 (465)
T 3net_A 116 DLTFPFARYQMDVVFRGERAKD----GRFRQFRQCDIDVVGREKLSLLYDAQ---MPAIITEIFEAVNIGDFVIRINNRK 188 (465)
T ss_dssp GSCSSEEEEECCEEECBC----------CCEEEEEEEEEECSSCCCHHHHHH---HHHHHHHHHHHHTCSCEEEEEEEHH
T ss_pred ccCCCeEEEEeccEEecCCCCC----CCcceeEEeeEEEECCCCccchhhHH---HHHHHHHHHHHcCCCceEEEECCHH
Confidence 4578999999999999999987 8999999999999999988 8 999 999999999999997 999999985
Q ss_pred -----CCcCCChhhHHHHHHH------------HHHHHHHcCCCcEEcCCCC---cccccc---hhH------------H
Q 006680 389 -----EKYLGDLATWEKAEAA------------LTEALNEFGKPWQINEGDG---AFYGPK---IDI------------S 433 (635)
Q Consensus 389 -----~~~lg~~~~~~~a~~~------------l~~~l~~~g~~~~~~~g~~---af~gpk---id~------------~ 433 (635)
.+.+|..+.|...-.. +.+.|.+.|++....+... .++|+. ++. .
T Consensus 189 ~l~~~l~~~g~~~~~~~~~~~~ld~~~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~~l~~l~~~~~~~~~~~~ 268 (465)
T 3net_A 189 VLTGFFQSLNISETQIKSCISIIDNLEKIGEAKVKLELEKEGINPEQTQKIIDFVKIDGSVDDVLDKLKHLSQTLPESEQ 268 (465)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhccccCHHHHHHHHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhccccChH
Confidence 1457777665422111 1122333343322111111 234442 110 0
Q ss_pred HHHH---hhhhh--h-h-ce----eeeecCCCeeeeeEEEecC--C----C-ccccccc--------c--------cc-c
Q 006680 434 VSDA---LKRKF--Q-C-AT----LQLDFQLPDRFNLGYSAED--E----A-KTERPVM--------I--------HR-A 478 (635)
Q Consensus 434 ~~d~---l~r~~--~-~-~t----~~ld~~l~~~~~L~Y~~~~--e----~-~~~~p~~--------i--------~~-a 478 (635)
+.++ +++.+ + + .. +++|+.+.+ +|+|||+. | + ....++. + +. +
T Consensus 269 ~~~~l~~l~~~~l~~~~~~~~~~~~~~D~~lvr--gldYYtG~vFe~~~~~~~~~~~i~~GGRYD~L~~~f~g~~~pavG 346 (465)
T 3net_A 269 FNLGVSELETVITGVRNLGVPDKRFCIDLAIAR--GLNYYTGTVYETTLIGHEALGSICSGGRYEELVGTFIGEKMPGVG 346 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEECTTCCC--CSSSEEEEEEEEEETTCGGGCCSSEEEEESSSSGGGTCSCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcccccCceEEEccCccC--CCcccCceEEEEEECCCCccceecccccHHHHhhhhcCCCCceee
Confidence 1111 22222 1 1 25 889988885 89999985 1 1 0111221 1 10 1
Q ss_pred eeeeHHHHHHHHHHHhCCCCCC-CCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccce
Q 006680 479 ILGSVERMFAILLEHYKGKWPF-WLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTY 557 (635)
Q Consensus 479 i~GgveR~~~~l~e~~~g~~p~-~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~ 557 (635)
..-|+||++++|.|+ |.||. |.+|.||+|+|++++...+|.++++.||++|++|++|.+++++++|
T Consensus 347 faiGieRli~~L~e~--g~~p~~~~~p~~V~Vi~~~~~~~~~A~~la~~LR~~Gi~ve~d~~~~sl~~q----------- 413 (465)
T 3net_A 347 ISIGLTRLISRLLKA--GILNTLPPTPAQVVVVNMQDELMPTYLKVSQQLRQAGLNVITNFEKRQLGKQ----------- 413 (465)
T ss_dssp EEEEHHHHHHHHHHT--TSSCCCCSCSCCEEECCSCGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHH-----------
T ss_pred eeccHHHHHHHHHHc--CCCCCcCCCCCeEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHH-----------
Confidence 222899999999995 78997 8999999999999999999999999999999999999999999999
Q ss_pred eeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccC-eEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 558 IEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSG-QVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~-~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++ .++| +|+||+|++++|..++++++++.+++++
T Consensus 414 -----------------------~k~A~~~g~p~~iiiG~~-~~~g~~V~vk~~~t~eq~~v~~~el~~~l~~~l 464 (465)
T 3net_A 414 -----------------------FQAADKQGIRFCVIIGAD-EAAAQKSSLKDLQSGEQVEVALADLAEEIKRRL 464 (465)
T ss_dssp -----------------------HHHHHHHTCCEEEECCHH-HHHTTCCEEEETTTTEEEECC-CCHHHHHHHTC
T ss_pred -----------------------HHHHHHcCCCEEEEECch-hhcCCEEEEEECCCCceEEeeHHHHHHHHHHhc
Confidence 999999999999999999 9999 9999999999999999999999998754
No 24
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=99.97 E-value=4.9e-31 Score=294.36 Aligned_cols=274 Identities=17% Similarity=0.234 Sum_probs=190.9
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
.++.+|+|+|++|++||+|+++... +|+|||+|+|+||||..++ +|+| ++.++.++|+.||++ +.+++|++.
T Consensus 152 ~~~~~p~k~yyig~vfR~Erp~~~~--GR~ReF~Q~g~ei~G~~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~in~~~ 226 (517)
T 4g85_A 152 MNKLTNIKRYHIAKVYRRDNPAMTR--GRYREFYQCDFDIAGNFDPMIPDAE---CLKIMCEILSSLQIGDFLVKVNDRR 226 (517)
T ss_dssp HTTCSCEEEEEEEEEECCCC---------CCEEEEEEEEEESCCCTTHHHHH---HHHHHHHHHHHHCCCCEEEEEEEHH
T ss_pred hCCCCCceeEEEeceEeccCccccc--CccceeeeeceeccCCccchHHHHH---HHHHHHHHHHhhcCCcccccccchh
Confidence 4567899999999999999886433 5999999999999998876 5888 899999999999997 999998874
Q ss_pred C-----CcCCChhhHHHHHHHHHHHHHHc----------------CCCcEEc-------CCCCc-------ccccchhH-
Q 006680 389 E-----KYLGDLATWEKAEAALTEALNEF----------------GKPWQIN-------EGDGA-------FYGPKIDI- 432 (635)
Q Consensus 389 ~-----~~lg~~~~~~~a~~~l~~~l~~~----------------g~~~~~~-------~g~~a-------f~gpkid~- 432 (635)
. .++|..+.+.. .+..++++. +...... ...|. ...|++..
T Consensus 227 ~l~~~~~~~~~~~~~~~---~~~~~ld~ldk~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 303 (517)
T 4g85_A 227 ILDGMFAICGVSDSKFR---TICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQN 303 (517)
T ss_dssp HHHHHHHHHTCCHHHHH---HHHHHHHTTTTSCHHHHHHHHHHHTCCCHHHHHHHHHHHHCCBSHHHHHHHHHCHHHHTC
T ss_pred hHHHHHHhhcchHHHHH---HHHHHHhhhcchhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhccccccc
Confidence 1 23444433222 222222221 1110000 00000 00011100
Q ss_pred -----------HHHHHhhhhhhhceeeeecCCCeeeeeEEEecC--CC--------------------------------
Q 006680 433 -----------SVSDALKRKFQCATLQLDFQLPDRFNLGYSAED--EA-------------------------------- 467 (635)
Q Consensus 433 -----------~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~--e~-------------------------------- 467 (635)
.+.+.+....-...+.+|+.+. .+|+|||++ |.
T Consensus 304 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lv--rgldYYtG~vFE~~~~~~~~~~~~~~~~~~~i~~GGRYD~Lv~~f 381 (517)
T 4g85_A 304 KQALEGLGDLKLLFEYLTLFGIDDKISFDLSLA--RGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMF 381 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCGGGEEECTTCC--CCTTTCSSEEEEEEEC-------------CCSEEEEECHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcceeeccccc--cCCcccCCeEEEEEECCcccccccCCcccceecCCCchhHHHHHh
Confidence 0011111111112355666554 489999986 11
Q ss_pred ---ccccccccccceeeeHHHHHHHHHHHhCC-CCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeC-CCCC
Q 006680 468 ---KTERPVMIHRAILGSVERMFAILLEHYKG-KWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT-TDRK 542 (635)
Q Consensus 468 ---~~~~p~~i~~ai~GgveR~~~~l~e~~~g-~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~-~~~~ 542 (635)
+...|.+ +++.|+||++++|.++..+ .||.|.+|.+|+|++++++...+|.+|++.||++|++|++|. .+.+
T Consensus 382 ~~~G~~~pav---Gfa~gierl~~~le~~~~~~~~~~~~~~~~V~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~ 458 (517)
T 4g85_A 382 DPKGRKVPCV---GLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPK 458 (517)
T ss_dssp SSSCCCCCEE---EEEECHHHHHHHHHHHHHHTTCCCCSCCCCEEEEESSSSCHHHHHHHHHHHHHTTCCEEECSSSSCC
T ss_pred ccCCCCCCcc---cccchHHHHHHHHHHhccccCccccCCCCEEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 0011110 2233899999988776543 456667889999999999999999999999999999999987 4568
Q ss_pred cCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHH
Q 006680 543 IQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIED 622 (635)
Q Consensus 543 l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~ 622 (635)
+++| +++|++.|+||++|||++|+++|+|+||++.+|+|..|+++|
T Consensus 459 l~~q----------------------------------~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~e 504 (517)
T 4g85_A 459 LLNQ----------------------------------LQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 504 (517)
T ss_dssp HHHH----------------------------------HHHHHHHCCCEEEEECHHHHHTTEEEEEETTTCCEEEEEHHH
T ss_pred HHHH----------------------------------HHHHHHCCCCEEEEECChhHhCCEEEEEECCCCCeEEeeHHH
Confidence 9999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006680 623 LLKHFKEKLE 632 (635)
Q Consensus 623 l~~~~~~~~~ 632 (635)
++++|++++.
T Consensus 505 lv~~lk~~l~ 514 (517)
T 4g85_A 505 LVEEIKRRTG 514 (517)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhc
Confidence 9999998865
No 25
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=278.38 Aligned_cols=274 Identities=17% Similarity=0.229 Sum_probs=189.1
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
+++.+|+|+|++|++||+|+++. +.+|.|||+|+|+|+||..++ +|+| ++.++.++|+.||++ +.+++|++.
T Consensus 99 ~~~~~p~k~~y~g~vfR~erp~~--~~gR~Ref~Q~g~ei~G~~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~i~~~~ 173 (464)
T 4g84_A 99 MNKLTNIKRYHIAKVYRRDNPAM--TRGRYREFYQCDFDIAGNFDPMIPDAE---CLKIMCEILSSLQIGDFLVKVNDRR 173 (464)
T ss_dssp HTTCSCEEEEEEEEEECCCC--------CCSEEEEEEEEEESCCSTTHHHHH---HHHHHHHHHHHHTCCCEEEEEEEHH
T ss_pred hcCCCCceeEEEecceeccCCcc--ccCccceeeecceeccCCccchhhHHH---HHHHHHHHHHHhCCCCcceeecchh
Confidence 45678999999999999998753 338999999999999998776 5888 899999999999997 999998863
Q ss_pred C-----CcCCChhhHHHHHHHHHHHHHHc----------------CCCcEEc-------CCCC-------cccccchhH-
Q 006680 389 E-----KYLGDLATWEKAEAALTEALNEF----------------GKPWQIN-------EGDG-------AFYGPKIDI- 432 (635)
Q Consensus 389 ~-----~~lg~~~~~~~a~~~l~~~l~~~----------------g~~~~~~-------~g~~-------af~gpkid~- 432 (635)
. ..+|..+.+.. .+..++++. +.+-... .-.| ....|++..
T Consensus 174 ~~~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 250 (464)
T 4g84_A 174 ILDGMFAICGVSDSKFR---TICSSVDKLDKVSWEEVKNEMVGEKGLAPEVADRIGDYVQQHGGVSLVEQLLQDPKLSQN 250 (464)
T ss_dssp HHHHHHHHHTCCHHHHH---HHHHHHGGGGTSCHHHHHHHHHHTTCCCHHHHHHHHHHHTCEESHHHHHHHTTCHHHHTC
T ss_pred hHHHHHHhhcCcHHHHH---HHHHHHHHhchhhHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCchHHHHHHhccccccc
Confidence 1 22343332211 222222221 1110000 0000 000111100
Q ss_pred -----------HHHHHhhhhhhhceeeeecCCCeeeeeEEEecC--CC-----------------------cc-------
Q 006680 433 -----------SVSDALKRKFQCATLQLDFQLPDRFNLGYSAED--EA-----------------------KT------- 469 (635)
Q Consensus 433 -----------~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~--e~-----------------------~~------- 469 (635)
.+.+.+........+.+|+.+. .+|+|||+. |. .+
T Consensus 251 ~~~~~~l~~l~~l~~~l~~~g~~~~i~~d~~lv--rgldYYtG~vFe~~~~~~~~~~~~~~~~~~~i~~GGRYD~L~~~~ 328 (464)
T 4g84_A 251 KQALEGLGDLKLLFEYLTLFGIDDKISFDLSLA--RGLDYYTGVIYEAVLLQTPAQAGEEPLGVGSVAAGGRYDGLVGMF 328 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCGGGEEEETTCC--CCTTTCSSEEEEEEEEECC-------EEEEEEEEEEECCSTGGGT
T ss_pred HHHHHHHHHHHHHHhHHHhhCCCcceeeccccc--CCCcCcCCeEEEEEECCcccccccCCcccceeccCCchhHHHHHh
Confidence 0111111111112455666655 489999876 11 01
Q ss_pred -----ccccccccceeeeHHHHHHHHHHHhCCCCC-CCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCC-CCC
Q 006680 470 -----ERPVMIHRAILGSVERMFAILLEHYKGKWP-FWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT-DRK 542 (635)
Q Consensus 470 -----~~p~~i~~ai~GgveR~~~~l~e~~~g~~p-~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~-~~~ 542 (635)
..|.+ +..-|+||++++|.++..+..| .|.+|.+|+|++++++...+|.+|++.||++|++|++|+. +.+
T Consensus 329 ~~~g~~~pav---GfaigieRl~~~l~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~a~~l~~~Lr~~Gi~ve~~~~~~~~ 405 (464)
T 4g84_A 329 DPKGRKVPCV---GLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWDAGIKAELLYKKNPK 405 (464)
T ss_dssp STTCCCCCEE---EEEECHHHHHHHHHHHHHTTTCCCCSCCCCEEEECSSSSCHHHHHHHHHHHHHTTCCEECCSCSSCC
T ss_pred ccCCCCCCCc---cccccHHHHHHHHHHhccccCcccccccceEEEEeCCHHHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 11110 1122899999999887543322 3456789999999999999999999999999999999874 568
Q ss_pred cCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHH
Q 006680 543 IQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIED 622 (635)
Q Consensus 543 l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~ 622 (635)
+++| +++|++.|+||++|||++|.++|+|+||++.+|+|..++++|
T Consensus 406 l~~q----------------------------------~k~A~~~g~~~~viiG~~E~~~g~v~vK~l~tgeq~~v~~~e 451 (464)
T 4g84_A 406 LLNQ----------------------------------LQYCEEAGIPLVAIIGEQELKDGVIKLRSVTSREEVDVRRED 451 (464)
T ss_dssp HHHH----------------------------------HHHHHHHTCCEEEECCHHHHHHTEEEEEETTTCCEEEEEGGG
T ss_pred HHHH----------------------------------HHHHHHCCCCEEEEECchhhhCCEEEEEECCCCCeEEeeHHH
Confidence 9999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 006680 623 LLKHFKEKLE 632 (635)
Q Consensus 623 l~~~~~~~~~ 632 (635)
++++|++++.
T Consensus 452 lv~~lk~~l~ 461 (464)
T 4g84_A 452 LVEEIKRRTG 461 (464)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9999998875
No 26
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=99.95 E-value=4.8e-28 Score=266.56 Aligned_cols=259 Identities=20% Similarity=0.179 Sum_probs=172.7
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCC--e-EEEEEccCC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGF--T-YELKLSTRP 388 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~--~-~~l~ls~r~ 388 (635)
++++|+|++++|++||+|+++. +|+|||+|+|+|+||.+++ +|+| ++.++.++|+.||+ + +.+.||+|.
T Consensus 119 ~~~~P~r~~y~g~vfR~e~~~~----gR~ReF~Q~g~ei~G~~~~~~DaE---vi~l~~~~l~~lgl~~~~~~i~in~~~ 191 (456)
T 3lc0_A 119 SLLLPAKWYSIPQCWRYEAITR----GRRREHYQWNMDIVGVKSVSAEVE---LVCAACWAMRSLGLSSKDVGIKVNSRK 191 (456)
T ss_dssp TCCSSEEEEECCEEECCCC---------CCEEEEEEEEEESCCSTHHHHH---HHHHHHHHHHHTTCCTTTEEEEEEEHH
T ss_pred ccCCCEEEEEeccEEecCCCCC----CCccceEEEEEEEEcCCChHhhHH---HHHHHHHHHHHcCCCCCceEEEEcCHH
Confidence 4578999999999999999887 8999999999999999998 8888 99999999999999 4 999999974
Q ss_pred C-----CcCCChhh-HHHH-----------HHHHHHHHHHcCCCcEE--------cCCCCcccccchhHHH------HHH
Q 006680 389 E-----KYLGDLAT-WEKA-----------EAALTEALNEFGKPWQI--------NEGDGAFYGPKIDISV------SDA 437 (635)
Q Consensus 389 ~-----~~lg~~~~-~~~a-----------~~~l~~~l~~~g~~~~~--------~~g~~af~gpkid~~~------~d~ 437 (635)
. ..+|.++. +... ...+.+.|.+.|.+-.. +.+ + .|++...+ -+.
T Consensus 192 il~~~l~~~g~~~~~~~~v~~~idkl~~~~~~~~~~~L~~~~l~~~~~~~l~~~~~~~-~---~~~l~~~l~~~~~~~~~ 267 (456)
T 3lc0_A 192 VLQTVVEQAGVTSDKFAPVCVIVDKMEKIPREEVEAQLAVLGLEPTVVDAITTTLSLK-S---IDEIAQRVGEEHEAVKE 267 (456)
T ss_dssp HHHHHHHHTTCCGGGHHHHHHHHTTTTTSCHHHHHHHHHHTTCCHHHHHHHHHHHTCC-S---HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhcccCHHHHHHHHHHcCCCHHHHHHHHHHhccC-C---HHHHHHHHhHHHHHHHH
Confidence 1 22343322 1100 01122333333322100 000 0 11111111 111
Q ss_pred hhhhhh------h-ceeeeecCCCeeeeeEEEecC--C--------------Ccc-----------ccccccccceeeeH
Q 006680 438 LKRKFQ------C-ATLQLDFQLPDRFNLGYSAED--E--------------AKT-----------ERPVMIHRAILGSV 483 (635)
Q Consensus 438 l~r~~~------~-~t~~ld~~l~~~~~L~Y~~~~--e--------------~~~-----------~~p~~i~~ai~Ggv 483 (635)
+...+. . ..+.+|+.+.+ +|+|||+. | |.+ ..|.+ +.+-|+
T Consensus 268 L~~l~~~l~~~gi~~~~~~D~~lvR--gldYYTG~vFE~~~~~g~~~~I~~GGRYD~Lv~~fg~~~~~Pav---GFaig~ 342 (456)
T 3lc0_A 268 LRQFFEQVEAYGYGDWVLFDASVVR--GLAYYTGIVFEGFDREGKFRALCGGGRYDNLLTTYGSPTPIPCA---GFGFGD 342 (456)
T ss_dssp HHHHHHHHHHHTCGGGEEECTTCCC--SCTTCCSEEEEEEETTSCSSCSEEEEECSSHHHHTTCSSCCCEE---EEEEES
T ss_pred HHHHHHHHHHcCCCceEEEecCccC--CccccCCeEEEEEECCCCcceEeecccHHHHHHHhCCCCCCCEE---EEEeEH
Confidence 221111 1 23667877764 89999987 1 111 12321 333389
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeeh
Q 006680 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFS 563 (635)
Q Consensus 484 eR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~ 563 (635)
||++.+|.+ .|..|....+.+++|++.+++...+|.++++.||++|++|++|..+++++|+
T Consensus 343 eRl~~~l~~--~~~~~~~~~~~~v~v~~~~~~~~~~a~~la~~LR~~Gi~ve~~~~~~slkkq----------------- 403 (456)
T 3lc0_A 343 CVIVELLQE--KRLLPDIPHVVDDVVIPFDESMRPHALAVLRRLRDAGRSADIILDKKKVVQA----------------- 403 (456)
T ss_dssp SHHHHHHHH--TTCCCCCCCCEEEEEEESSGGGHHHHHHHHHHHHHTTCCEEECCSCCCHHHH-----------------
T ss_pred HHHHHHHHh--cCCCCccCCCCcEEEEEcCHHHHHHHHHHHHHHHHCCCeEEEecCCCCHHHH-----------------
Confidence 999999876 4555432345689999999988999999999999999999999988999999
Q ss_pred hhhhhhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHH
Q 006680 564 CWEELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDL 623 (635)
Q Consensus 564 ~~~~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l 623 (635)
+++|++.|++|++|||++|.++|+|+||++.+|+|..+++++.
T Consensus 404 -----------------~k~A~k~ga~~vviiGe~E~~~g~v~vK~l~tgeQ~~~~~~~~ 446 (456)
T 3lc0_A 404 -----------------FNYADRVGAVRAVLVAPEEWERGEVQVKMLREGTGKEEGGAER 446 (456)
T ss_dssp -----------------HHHHHHTTEEEEEEECHHHHHTTEEEEEECC------------
T ss_pred -----------------HHHHHHcCCCEEEEECCchhcCCeEEEEECCCCCeEEeccccc
Confidence 9999999999999999999999999999999999999998764
No 27
>1v4p_A Alanyl-tRNA synthetase; alanine-tRNA ligase, riken structural genomics/proteomics initiative RSGI, structural genomics; 1.45A {Pyrococcus horikoshii} SCOP: d.67.1.2 PDB: 1wxo_A 1v7o_A 1wnu_A 3rhu_A 3rfn_A
Probab=99.94 E-value=7.7e-27 Score=221.60 Aligned_cols=136 Identities=19% Similarity=0.256 Sum_probs=117.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC--CceEeccccccCC-eeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeC
Q 006680 149 EGRDTFWHSSAHILGQAIEQQYG--CKLCIGPCTTRGE-GFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVT 223 (635)
Q Consensus 149 eG~~vy~hS~ahlL~~Av~~lfg--~~L~ig~sl~~~~-Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vs 223 (635)
+|++++|||++|||++|++++|| ++++++++++ + |+||||++ +..+|++|+++||++|+++| |+||++.+++
T Consensus 2 ~g~~~~~HSa~HlL~~Al~~~~~~~~~~~~~~~i~--~~~~~~~~d~-~~~~t~e~l~~IE~~~n~~I~~~~pi~~~~~~ 78 (157)
T 1v4p_A 2 YSIEVRTHSALHVVKGAVVKVLGSEAKWTYSTYVK--GNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELP 78 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCGGGCCEEEEEEE--TTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEE
T ss_pred cchHHHhHHHHHHHHHHHHHHhCCCcEEecCceec--CCCcEEEEEe-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 68999999999999999999998 7788898887 5 89999987 46899999999999999999 9999999999
Q ss_pred HHHHHHHhhcCcchhhhcccCCCC-CeEEEEEeCCe-EeecCCCCCCCCccccceEEeecccceeccCCCCCCc
Q 006680 224 RDQALEMFSDNNFKVEIINDLPAD-KTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESL 295 (635)
Q Consensus 224 reeAle~F~~~~~K~~LL~~~~~~-~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~l 295 (635)
++||+++|+.+.++.+. .|++ +.|++|+||+| +|+|+||||||||+|+.|+|++ |.++++++.+
T Consensus 79 ~~eA~~~f~~~~~~~~~---~~~~~~~vrv~~ig~~~~~~C~GtHv~~Tg~I~~fki~~-----~~~~~~~~~l 144 (157)
T 1v4p_A 79 REEAEKMFGEDMYDLFP---VPEDVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRK-----VRFRKSKGLL 144 (157)
T ss_dssp HHHHHHHHGGGGSCSSC---CCTTCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEE-----EEEETTTTEE
T ss_pred HHHHHHhhCcccccccc---CCCCCCeEEEEEECCeeEeCCCCCccCChhhcceEEEEE-----EEecCCCcEE
Confidence 99999999876554332 2332 58999999999 9999999999999999999984 4444455444
No 28
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=99.80 E-value=1.8e-19 Score=206.22 Aligned_cols=127 Identities=20% Similarity=0.248 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHH
Q 006680 151 RDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQAL 228 (635)
Q Consensus 151 ~~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAl 228 (635)
..+++||++|||++|++++||.++.+.++.-.++|+||||.. ...+|++++++||++||++| |+||++.+++++||+
T Consensus 595 ~~m~~HTAtHLL~~ALr~vlG~~v~q~GS~v~~d~~r~DF~~-~~~lT~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~ 673 (739)
T 2ztg_A 595 RHMRHHSATHVLLYSLQKVLGNHVWQAGARKEFSKARLDVTH-FRRPSEEEIKEIEMLANREILANKPIKWEWMDRIEAE 673 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCEEECCSCCSSCEEEEEC-SSCCCHHHHHHHHHHHHHHHHTTCBEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEecCcEEcCCcEEEEEeC-CCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCHHHHH
Confidence 358899999999999999999888887776212899999986 56899999999999999999 999999999999999
Q ss_pred HHhhcCcchhhhcc-cCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeeccc
Q 006680 229 EMFSDNNFKVEIIN-DLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASS 283 (635)
Q Consensus 229 e~F~~~~~K~~LL~-~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~ 283 (635)
++| +..|+. ..+.++.|+||+||+++|+|+||||+|||+|+.|+|+++++
T Consensus 674 ~~~-----~l~L~~~~~~~~d~VRVV~IGd~~elCGGTHV~nTgeIg~fkIls~s~ 724 (739)
T 2ztg_A 674 RKF-----GFRLYQGGVPPGRKIRVVQVGDDVQACGGTHCRSTGEIGMLKILKVES 724 (739)
T ss_dssp HHH-----CGGGGTTCCCCSSEEEEEEETTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred HhC-----CHhhhcCCCCCCCeEEEEEECCeeeCcCCcCcccHhHcCcEEEEEEeE
Confidence 997 456664 23356789999999999999999999999999999998864
No 29
>3kew_A DHHA1 domain protein; structural genomics, PSI-2, tRNA synthase, protein structure initiative; 2.00A {Clostridium perfringens}
Probab=99.80 E-value=2.5e-19 Score=181.83 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=117.3
Q ss_pred EcCEEe-eccccccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHh
Q 006680 123 VNGVLW-DMTRPLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPD 200 (635)
Q Consensus 123 VNg~l~-DL~~pl~~d~~lef-l~f~s~eG~~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~e 200 (635)
.+|.++ -+..++..+..|+. ||++ .--.-+.|||++|||++|++++||.+ +.|+.++ .+++||||. .++|++
T Consensus 64 ~~g~i~H~~~~~l~~g~~V~~~vD~~-rR~~~~~~HTa~HLL~~al~~~~g~~-~~G~~v~-~~~~r~Df~---~~lt~e 137 (241)
T 3kew_A 64 EEGKVYHVLEKEPKKLKNLQCELDWE-RRFDGMQQHLGQHLLSGCFYDLFGAN-TCGFHLG-KEISTVDIV---GFLDEK 137 (241)
T ss_dssp ETTEEEEEESSCCCCCSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHCCC-EEEEEEC-SSCEEEEEE---SCCCHH
T ss_pred eCCEEEEEECCcCCCCCEEEEEECHH-HhhhHHHHHHHHHHHHHHHHHHCCCC-eEecccc-CCeEEEEEC---CCCCHH
Confidence 356544 23355655666665 4433 23345779999999999999999877 4777764 279999997 479999
Q ss_pred HHHHHHHHHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceE
Q 006680 201 HFKSIDSEADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFG 277 (635)
Q Consensus 201 dl~~IE~~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~ 277 (635)
++++||++||++| |+||++.+++++||++++.. + +.+ . .++.|++|++|+| +++|.||||+|||+|+.|+
T Consensus 138 ~l~~IE~~vn~~I~~~~pV~~~~~~~~eA~~~~~~---~--~~e-~-~~~~VRvv~ig~~~~~~CgGtHV~~TgeIg~fk 210 (241)
T 3kew_A 138 TIREAEKEANRLIFENLEVKSYAPSKKELKKVKTR---R--ALP-K-TDEEIRIVEIVGLDLNACCGVHPRNTRDLQVIK 210 (241)
T ss_dssp HHHHHHHHHHHHHHHTCBEEEECCCTTTTTTCCCS---S--CCC-C-CSSCCCEEEETTTEEEECCSCCCSBSGGGCCEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCHHHHHhcChh---h--cCC-c-cCCcEEEEEECCeEEEcCCCCCcCCHhhcCCEE
Confidence 9999999999999 99999999999999987521 1 222 1 2568999999998 8999999999999999999
Q ss_pred Eeeccc
Q 006680 278 CLKASS 283 (635)
Q Consensus 278 L~k~s~ 283 (635)
|++.++
T Consensus 211 I~~~~~ 216 (241)
T 3kew_A 211 IRRWEK 216 (241)
T ss_dssp EEEEEE
T ss_pred EEEEec
Confidence 999875
No 30
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=99.79 E-value=1.6e-20 Score=204.92 Aligned_cols=161 Identities=22% Similarity=0.371 Sum_probs=128.9
Q ss_pred cccccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEE-EEEccC
Q 006680 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYE-LKLSTR 387 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~-l~ls~r 387 (635)
+|+++|++++++|.+||+|.++ ...||+|+|||+|.|+|+||.++++++|+..++.++.++|+.||++|. +.++++
T Consensus 246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~~rvv~l~~g 325 (425)
T 2dq3_A 246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLPYRVVELCTG 325 (425)
T ss_dssp ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEecCC
Confidence 6789999999999999999987 579999999999999999999999998888999999999999999987 667776
Q ss_pred C----CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEe
Q 006680 388 P----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSA 463 (635)
Q Consensus 388 ~----~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~ 463 (635)
. ....+|.+.|..++ + .++...+|++. .||| +.||++.|.+
T Consensus 326 dlg~~a~~~~diE~w~p~~--------------------~-------------~~~ei~s~sn~-~Dfq-a~r~~i~y~~ 370 (425)
T 2dq3_A 326 DLGFSAAKTYDIEVWFPSQ--------------------N-------------KYREISSCSNC-EDFQ-ARRMNTRFKD 370 (425)
T ss_dssp TCCTTCSEEEEEEEEEGGG--------------------T-------------EEEEEEEEEEC-TTHH-HHHHTEEEEC
T ss_pred cCCChHHhccchhhccchh--------------------H-------------HHHHHHHcCCc-cccC-cccCCeEEEC
Confidence 3 22333444443221 1 11222466665 7888 8999999998
Q ss_pred cCCCccccccccccceeee---HHHHHHHHHHHhC---C--CCCCCCCCce-EEEEe
Q 006680 464 EDEAKTERPVMIHRAILGS---VERMFAILLEHYK---G--KWPFWLSPRQ-AIVCP 511 (635)
Q Consensus 464 ~~e~~~~~p~~i~~ai~Gg---veR~~~~l~e~~~---g--~~p~~lsp~q-v~v~p 511 (635)
.+ ++. +.++| ++.|+ ++|++++|+|+|. | .||+||+|+| +-+|+
T Consensus 371 ~~-~~k--~~~vH-tl~Gs~~av~R~i~allE~~~~~~G~i~iP~~L~P~~~~~~i~ 423 (425)
T 2dq3_A 371 SK-TGK--NRFVH-TLNGSGLAVGRTLAAILENYQQEDGSVVVPEVLRDYVGTDVIR 423 (425)
T ss_dssp TT-TCS--EEECE-EEEEEEEEHHHHHHHHHHHTBCTTSCEECCTTTHHHHSCSEEC
T ss_pred CC-CCe--eEEEE-EEeccccHHHHHHHHHHHhCCCCCCCEecCccccCccCcccCC
Confidence 75 222 33789 99997 9999999999997 8 7999999999 66664
No 31
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=99.74 E-value=4.5e-19 Score=194.90 Aligned_cols=159 Identities=19% Similarity=0.321 Sum_probs=122.8
Q ss_pred cccccceEEeeeccccccccC---CCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 312 AFAELPLRLADFGVLHRNEAS---GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~---g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
+|+++|++++++|.+||+|.+ +...||+|+|||+|.|+|+||+++++++|+..+++++.++|+.|||+|.+...+.+
T Consensus 267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~yrv~~~~~g 346 (455)
T 2dq0_A 267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIPYRVVNICTG 346 (455)
T ss_dssp ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG
T ss_pred CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCceEEEECCCc
Confidence 688999999999999999998 45799999999999999999999999999999999999999999999988776655
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcE-EcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEec-CC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQ-INEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAE-DE 466 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~-~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~-~e 466 (635)
+...|...+|+ .+ ..++.++|. +++..++| .||| +.||++.|.+. +
T Consensus 347 dlg~~a~~~~d----------------iE~w~p~~~~~~----------ei~s~s~c----~Dfq-arR~~iry~~~~~- 394 (455)
T 2dq0_A 347 DLGYVAAKKYD----------------IEAWMPGQGKFR----------EVVSASNC----TDWQ-ARRLNIRFRDRTD- 394 (455)
T ss_dssp GSCSSCSEEEE----------------EEEEETTTTEEE----------EEEEEEEC----TTTT-HHHHTEEEESSTT-
T ss_pred cccChhhceee----------------eeeecCcCCccc----------EEEeeccc----hhhH-hhccCcEEecCCC-
Confidence 44333222211 00 113433331 12222233 3677 88999999976 4
Q ss_pred Cccccccccccceee---eHHHHHHHHHHHhC---C--CCCCCCCCce
Q 006680 467 AKTERPVMIHRAILG---SVERMFAILLEHYK---G--KWPFWLSPRQ 506 (635)
Q Consensus 467 ~~~~~p~~i~~ai~G---gveR~~~~l~e~~~---g--~~p~~lsp~q 506 (635)
++ +.++| ++.| |++|++++|+|+|. | .||.||+|+|
T Consensus 395 g~---~~~vH-tlngs~lav~R~i~allE~~~~~dG~i~iP~~LaP~~ 438 (455)
T 2dq0_A 395 EK---PRYVH-TLNSTAIATSRAIVAILENHQEEDGTVRIPKVLWKYT 438 (455)
T ss_dssp SC---CEECE-EEEEEEEEHHHHHHHHHHHSBCTTSCEECCGGGHHHH
T ss_pred Cc---EEEEE-EEechHhHHHHHHHHHHHHccCCCCcEeCChhhCCcc
Confidence 32 45788 6645 68999999999997 8 7999999999
No 32
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=99.73 E-value=3e-18 Score=157.59 Aligned_cols=97 Identities=18% Similarity=0.258 Sum_probs=92.4
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCC--CCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhh
Q 006680 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTT--DRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVS 580 (635)
Q Consensus 503 sp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~--~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (635)
-|.||.|+||+++..+||.+|++.|+++|++|++|.+ +.+|++|
T Consensus 7 ~P~Qv~IlpVs~~~~~YA~~V~~~L~~~GiRvevD~~r~~e~Lg~k---------------------------------- 52 (130)
T 1v95_A 7 GPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQA---------------------------------- 52 (130)
T ss_dssp CCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHH----------------------------------
T ss_pred CCCeEEEEEeCcchHHHHHHHHHHHHHCCCEEEEecCCCCCcHHHH----------------------------------
Confidence 5899999999999999999999999999999999997 9999999
Q ss_pred HHHHhhcCCcEEEEEcccccccCeEEEEEcCC--CceecccHHHHHHHHHHHHHh
Q 006680 581 VREAQLAQYNFILVVGEEEAKSGQVSVRVRDQ--GDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 581 ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~--~~~~~~~~e~l~~~~~~~~~~ 633 (635)
||+|++.++||++|||++|.++|+|+||.|.. +++.+||++|+++.|++.+.+
T Consensus 53 IR~a~~~kvPy~lVVG~kE~e~~sVsVR~r~~~~~e~~~m~lde~i~~l~~~~~~ 107 (130)
T 1v95_A 53 LEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNYER 107 (130)
T ss_dssp HHHHHHHTCSEEEEECHHHHHHTEEEEEECSSSCCEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEechHHhcCeeEEEecCCCCCccCccCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987 899999999999999877654
No 33
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=99.73 E-value=1.6e-17 Score=190.30 Aligned_cols=125 Identities=18% Similarity=0.242 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCce-EeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHH
Q 006680 152 DTFWHSSAHILGQAIEQQYGCKL-CIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQAL 228 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~~L-~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAl 228 (635)
.+.+||++|||++|++++||.++ ..|+.+. .+++||||.. ...+|++++++||++||++| ++||++.+++++||.
T Consensus 609 ~mr~HTAtHLL~~ALr~vlG~~v~q~Gs~v~-~d~~rfDFs~-~~~lt~edL~~IE~~vNeiI~~nlpV~~~~~s~eEA~ 686 (752)
T 2zze_A 609 HMRHHTGTHVLMGALVRVLGRHVWQAGSQLT-TDWARLDISH-YXRISEEELXEIEMLANRIVMEDRXVTWEWLPRTTAE 686 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCEEEEEEEC-SSCEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBEEEEEEEHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHcCCceeeecCccc-CCceEEEEeC-CCCCCHHHHHHHHHHHHHHHHhCCccceeecCHHHHh
Confidence 47799999999999999998765 6677763 2799999986 56899999999999999999 999999999999999
Q ss_pred HHhhcCcchhhhcc-cCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeeccc
Q 006680 229 EMFSDNNFKVEIIN-DLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (635)
Q Consensus 229 e~F~~~~~K~~LL~-~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~ 283 (635)
+++... +.. ..+.++.|+||++|+| +++|.||||+|||+|+.|+|++.++
T Consensus 687 ~~~~~~-----lf~~ge~ygd~VRVV~IGd~svelCGGTHV~nTgeIG~fKIls~s~ 738 (752)
T 2zze_A 687 QXYGFR-----LYQGGVVPGREIRVVXIEDWDVQACGGTHLPSTGLVGPIXILRTER 738 (752)
T ss_dssp HHHCGG-----GCSSCCCCSSEEEEEEETTTEEEECCSCCCSBGGGGCCEEEEEEEE
T ss_pred hcchhh-----hhcCCCCCCCeEEEEEECCceeCCCCCCccCCHhHccEEEEEEEEE
Confidence 998642 221 1224568999999998 9999999999999999999998864
No 34
>2e1b_A PH0108, 216AA long hypothetical alanyl-tRNA synthetase; zinc-binding motif, trans-editing enzyme, structural genomics, NPPSFA; 2.70A {Pyrococcus horikoshii} SCOP: b.43.3.6 d.67.1.2
Probab=99.73 E-value=1.6e-17 Score=166.05 Aligned_cols=120 Identities=21% Similarity=0.188 Sum_probs=99.4
Q ss_pred cccCCCCeEE-eeCCChhHHHHHHHHHHHHHHHHHHHHhCC---ceEecccc-ccCCeeEEEEEcCCCCCCHhHHHHHHH
Q 006680 133 PLEADCDLKL-FTFDSDEGRDTFWHSSAHILGQAIEQQYGC---KLCIGPCT-TRGEGFYYDAFYGDLGLNPDHFKSIDS 207 (635)
Q Consensus 133 pl~~d~~lef-l~f~s~eG~~vy~hS~ahlL~~Av~~lfg~---~L~ig~sl-~~~~Gfy~d~~~~~~~it~edl~~IE~ 207 (635)
++.....++. ||++ .....+.|||++|||++|++++||. +.. |..+ . +++||||.. ..+++++ +++||+
T Consensus 76 ~l~~g~~v~~~vD~~-rR~~~~~~HTA~HlL~~Al~~~~g~~~~~~~-g~~v~~--~~~r~Df~~-~~~lt~e-l~~IE~ 149 (216)
T 2e1b_A 76 KFKVGDEVELKIDWD-YRYKLMRIHTGLHLLEHVLNEVLGEGNWQLV-GSGMSV--EKGRYDIAY-PENLNKY-KEQIIS 149 (216)
T ss_dssp GCCSSSCEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHTTTSCEEE-ECCBCS--SEEEEEEEC-SSCGGGG-HHHHHH
T ss_pred CcCCCCEEEEEECHH-HHHHHHHHhHHHHHHHHHHHHHcCCccceee-eeeEcC--CcEEEEEeC-CCCCCHH-HHHHHH
Confidence 4544445554 4432 3456688999999999999999986 665 5444 5 899999987 4568886 999999
Q ss_pred HHHHHh--cCCeEEEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeeccc
Q 006680 208 EADKAA--KQPFERIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASS 283 (635)
Q Consensus 208 ~m~eiI--~~pIer~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~ 283 (635)
+||++| |+||++.++++ +++++||+| +++|.||||+|||+|+.|+|++.++
T Consensus 150 ~vn~~I~~~~pv~~~~~~~-------------------------vRvv~ig~~~~~~CgGtHV~~TgeIg~fkI~~~~~ 203 (216)
T 2e1b_A 150 LFNKYVDEGGEVKIWWEGD-------------------------RRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSS 203 (216)
T ss_dssp HHHHHHHHCCBEEEEESSS-------------------------CEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEEE
T ss_pred HHHHHHhcCCCEEEEEcCC-------------------------EEEEEECCEEEECCCCCCcccHhhCceEEEEEEeE
Confidence 999999 99999998875 899999998 9999999999999999999998764
No 35
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}
Probab=99.71 E-value=6.6e-17 Score=175.26 Aligned_cols=233 Identities=14% Similarity=0.110 Sum_probs=144.0
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC-
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE- 389 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~- 389 (635)
++++|+|++++|++||+|+++. +|+|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ +.++|||+.-
T Consensus 99 ~~~~P~r~~y~g~vfR~e~~~~----gR~Ref~Q~g~ei~G~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~l~~~~i~ 171 (400)
T 3od1_A 99 DRAYPLRLAYQSNVYRAQQNEG----GKPAEFEQLGVELIGDGTASADGE---VIALMIAALKRAGLSEFKVAIGHVGYV 171 (400)
T ss_dssp SSCSCEEEEEEEEEECCCC-------CCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTCCSEEEEEEEHHHH
T ss_pred cCCCCeEEEEEcCEEeCCCCCC----CCCCccEEeEEEEECCCChHhHHH---HHHHHHHHHHHCCCCceEEEecCHHHH
Confidence 4678999999999999999886 8999999999999999988 8888 999999999999996 9999998841
Q ss_pred ----CcCCChhhHHHHHHHHHHHHHH------------cCCCcE------EcC---CCCccc--ccchh--HHHHHHh--
Q 006680 390 ----KYLGDLATWEKAEAALTEALNE------------FGKPWQ------INE---GDGAFY--GPKID--ISVSDAL-- 438 (635)
Q Consensus 390 ----~~lg~~~~~~~a~~~l~~~l~~------------~g~~~~------~~~---g~~af~--gpkid--~~~~d~l-- 438 (635)
..+|..+.+ ...+.++|++ .+.+-. .++ |+.... .|++. ....+++
T Consensus 172 ~~ll~~~~~~~~~---~~~l~~~l~~~~~~~~~~~l~~~~l~~~~~~~l~~l~~~~g~~~~l~~~~~l~~~~~~~~~l~~ 248 (400)
T 3od1_A 172 NALLMDVVGNEQR---ADRLRRFLYEKNYVGYREHVKSLNLSTIDKSRLMNLLSLRGGRAAIEEARGLIQTEKGKTALAE 248 (400)
T ss_dssp HHHHHHHHCCHHH---HHHHHHHHHTTCHHHHHHHHHHSSSCHHHHHHHHHGGGCEESHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HHHHHHcCCCHHH---HHHHHHHHHhcChhHHHHHHHhcCCCHHHHHHHHHHHhccCCHHHHHHHHhhhcChhhHHHHHH
Confidence 122333222 2233333332 222100 001 110000 01110 0111111
Q ss_pred -hhh------hhh-ceeeeecCCCeeeeeEEEecC--CC-------------ccc---------cccccccceeeeHHHH
Q 006680 439 -KRK------FQC-ATLQLDFQLPDRFNLGYSAED--EA-------------KTE---------RPVMIHRAILGSVERM 486 (635)
Q Consensus 439 -~r~------~~~-~t~~ld~~l~~~~~L~Y~~~~--e~-------------~~~---------~p~~i~~ai~GgveR~ 486 (635)
... +.. ..+.+|+.+.+ +|+|||+. |. .++ .|. .+..-|+||+
T Consensus 249 l~~l~~~L~~~gi~~~~~~D~~lvR--gldYYTG~vFe~~~~~~g~~i~~GGRYD~L~~~fG~~~pa---vGfaiglerL 323 (400)
T 3od1_A 249 MTKLYEVLESYGASEYVKFDLTLVL--HMSYYTGVVFEGYGNRLGVPLCSGGRYDELLSKFHRPAQA---TGFGVRIDLL 323 (400)
T ss_dssp HHHHHHHHHHTTCGGGEEEETTCCS--CSSSCCSEEEEEEETTCSSEEEEEEECTTHHHHTTCCCCE---EEEEEEHHHH
T ss_pred HHHHHHHHHHcCCCceEEEeCCccC--CCcccCCeEEEEEECCCCCeeecccccchhhhccCCCCCE---EEEEeeHHHH
Confidence 111 111 23667877664 89999987 11 111 122 1222289999
Q ss_pred HHHHHHHhCCCCCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhh
Q 006680 487 FAILLEHYKGKWPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWE 566 (635)
Q Consensus 487 ~~~l~e~~~g~~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~ 566 (635)
+.+|.+ .+.++. .| .++| +.+++...+|.++++.||++|++|+++..+.. +-
T Consensus 324 ~~~l~~--~~~~~~--~~-~v~v-~~~~~~~~~a~~~a~~LR~~G~~v~~~~~~~~--~~-------------------- 375 (400)
T 3od1_A 324 VEALNG--EIISNG--HE-QTCI-LFSNERRFEAIELARKKRANGEAVVLQDLAGV--TD-------------------- 375 (400)
T ss_dssp HHHHCC----------CC-CEEE-EECGGGHHHHHHHHHHHHTTTCCEEEEEGGGC--SC--------------------
T ss_pred HHHHHh--cCCCCC--CC-eEEE-EECcHHHHHHHHHHHHHHHCCCEEEEEecCCh--hH--------------------
Confidence 998865 233331 12 3654 47777889999999999999999999975421 23
Q ss_pred hhhcccccccchhhHHHHhhcCCcEEEEEcccccccC
Q 006680 567 ELVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSG 603 (635)
Q Consensus 567 ~~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~ 603 (635)
. +|...|+..++.+.+++-+.|
T Consensus 376 --------------~-~~~~~~~~~~~~~~~~~~~~~ 397 (400)
T 3od1_A 376 --------------V-DAMSSNYQDVIYCIGTAGRGG 397 (400)
T ss_dssp --------------H-HHHHTTSSEEEEECSCC----
T ss_pred --------------H-HHHHcCCCEEEEEecCCCCCC
Confidence 3 888899999999998876544
No 36
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=99.68 E-value=4.3e-18 Score=146.42 Aligned_cols=82 Identities=45% Similarity=0.847 Sum_probs=77.7
Q ss_pred CCCCCCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHHHHHHH
Q 006680 78 SLPHDPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRDTFWHS 157 (635)
Q Consensus 78 ~~~~~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~vy~hS 157 (635)
++++++|+|++|||+.++++.|++|+.|+|+.++..+++.+++|+|||++|||++||+.||.|+|+++++++|+++||||
T Consensus 6 ~~~~~~i~I~lpdG~~~~~~~~~~T~~dia~~i~~~l~~~~vaakvNg~l~dL~~~l~~d~~ve~vt~~~~eg~~i~rHS 85 (88)
T 1wwt_A 6 SGDSKPIKVTLPDGKQVDAESWKTTPYQIACGISQGLADNTVIAKVNNVVWDLDRPLEEDCTLELLKFEDEEAQAVYSGP 85 (88)
T ss_dssp CCSCCEEEEECTTSCEEEEETTTCCHHHHHHHSSTTTGGGCCCEEESSSEECSSSCCCSSEEEEECSSCCSCCSCSCCCC
T ss_pred cCCCCCEEEEECCCCEEEcccCCCCHHHHHHHhhhccccceEEEEECCEEECCCcCcCCCCEEEEEeCCCHHHhhheecc
Confidence 46678899999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HH
Q 006680 158 SA 159 (635)
Q Consensus 158 ~a 159 (635)
++
T Consensus 86 ~~ 87 (88)
T 1wwt_A 86 SS 87 (88)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 37
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=99.64 E-value=3.1e-17 Score=178.87 Aligned_cols=155 Identities=25% Similarity=0.457 Sum_probs=121.5
Q ss_pred cccccceEEeeeccccccccCCC---CcCceeeceeeecCEEEEecC--chhHHHHHHHHHHHHHHHHHhCCeEE-EEEc
Q 006680 312 AFAELPLRLADFGVLHRNEASGA---LTGLTRVRRFQQDDAHIFCRE--SQIKDEVRGVLEFIDYAYRIFGFTYE-LKLS 385 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~---l~gLiRvREF~Q~d~~if~~~--~~~~~E~~~~l~~~~~~~~~~G~~~~-l~ls 385 (635)
+|+++|++++++|.+||+|..+. ..||+|+|||+|.|+|+||.+ +++++|+..+++++..+|+.||++|. +.++
T Consensus 240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~~rvv~l~ 319 (421)
T 1ses_A 240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVA 319 (421)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCceEEEEec
Confidence 78899999999999999998543 689999999999999999999 78999999999999999999999987 4565
Q ss_pred cCC----CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEE
Q 006680 386 TRP----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGY 461 (635)
Q Consensus 386 ~r~----~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y 461 (635)
++. ....+|.+.|. ++.+.+ ...++|++. .||| +.|+++.|
T Consensus 320 t~dlg~~a~~~~DiE~w~--------------------p~~~~~-------------~ei~s~s~~-~Dfq-arr~~i~y 364 (421)
T 1ses_A 320 TGDMGPGKWRQVDIEVYL--------------------PSEGRY-------------RETHSCSAL-LDWQ-ARRANLRY 364 (421)
T ss_dssp HHHHCTTCSEEEEEEEEE--------------------TTTTEE-------------EEEEEEEEE-ETHH-HHHHTCEE
T ss_pred CccCCchhhhcccHhhee--------------------chhccc-------------hheeecccc-chhh-hhhhcCEe
Confidence 531 11122222221 222221 123677776 7898 88999999
Q ss_pred EecCCCccccccccccceeee---HHHHHHHHHHHhC---C--CCCCCCCCce
Q 006680 462 SAEDEAKTERPVMIHRAILGS---VERMFAILLEHYK---G--KWPFWLSPRQ 506 (635)
Q Consensus 462 ~~~~e~~~~~p~~i~~ai~Gg---veR~~~~l~e~~~---g--~~p~~lsp~q 506 (635)
.+.+ ..|.++| ++.|+ ++|++++|+|+|. | .||.+|+|+.
T Consensus 365 ~~~~----~~~~~vh-tlngs~lav~R~l~allE~~~~~dG~i~iP~~L~Py~ 412 (421)
T 1ses_A 365 RDPE----GRVRYAY-TLNNTALATPRILAMLLENHQLQDGRVRVPQALIPYM 412 (421)
T ss_dssp ECTT----SCEEECE-EEEEEEEEETHHHHHHHHHHBCTTSCEECCGGGHHHH
T ss_pred ECCC----CCEEEEE-ecCCccchHHHHHHHHHHhCCCCCCCEecChhcCCcc
Confidence 8764 2578899 88886 9999999999985 6 5999999875
No 38
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=99.61 E-value=2.1e-16 Score=175.27 Aligned_cols=159 Identities=23% Similarity=0.338 Sum_probs=120.6
Q ss_pred cccccceEEeeeccccccccC--CCCcCceeeceeeecCEEEEecCc--hhHHHHHHHHHHHHHHHHHhCCeEEE-EEcc
Q 006680 312 AFAELPLRLADFGVLHRNEAS--GALTGLTRVRRFQQDDAHIFCRES--QIKDEVRGVLEFIDYAYRIFGFTYEL-KLST 386 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~--g~l~gLiRvREF~Q~d~~if~~~~--~~~~E~~~~l~~~~~~~~~~G~~~~l-~ls~ 386 (635)
+|++||++++++|.+||+|.. ....||+|+|||+|.|+|+||.++ ++++|+..+++++.++|+.|||+|.+ .+++
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLpyrvv~l~t 376 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLHFRVLDMPT 376 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEccC
Confidence 889999999999999999987 237899999999999999999995 79999999999999999999999875 5666
Q ss_pred CC----CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEE
Q 006680 387 RP----EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYS 462 (635)
Q Consensus 387 r~----~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~ 462 (635)
+. ....+|.+.|. ++.+.+ ....+|. .+.||| +.||++.|.
T Consensus 377 gdlg~~a~~~~DiE~w~--------------------p~~~~~-------------~Ei~s~s-n~~Dfq-arR~~iry~ 421 (501)
T 1wle_A 377 QELGLPAYRKFDIEAWM--------------------PGRGRF-------------GEVTSAS-NCTDFQ-SRRLHIMFQ 421 (501)
T ss_dssp GGSTTTCSEEEEEEEEE--------------------TTTTEE-------------EEEEEEE-ECTTHH-HHHHTCEEE
T ss_pred cccCCchhheecHhhcc--------------------cccccc-------------eeEEecc-ccccch-hhhcCcEEE
Confidence 52 11222333332 222221 1123443 347887 889999999
Q ss_pred ecCCCccccccccccceeee---HHHHHHHHHHHhC---C--CCCCCCCCce-EEEE
Q 006680 463 AEDEAKTERPVMIHRAILGS---VERMFAILLEHYK---G--KWPFWLSPRQ-AIVC 510 (635)
Q Consensus 463 ~~~e~~~~~p~~i~~ai~Gg---veR~~~~l~e~~~---g--~~p~~lsp~q-v~v~ 510 (635)
+++ ++ +.++| ++.|+ ++|++++|+|+|. | .||.||+|++ .-+|
T Consensus 422 ~~~-gk---~~~vH-tlngSglav~R~l~alLEn~q~~dG~i~iP~~L~Py~g~~~i 473 (501)
T 1wle_A 422 TEA-GE---LQFAH-TVNATGCAVPRLLIALLESYQQKDGSVLVPPALQPYLGTDRI 473 (501)
T ss_dssp CSS-SC---EEECE-EEEEEEEEHHHHHHHHHHHHBCTTSCEECCGGGHHHHSSSEE
T ss_pred CCC-CC---EEEEE-EECCccchHHHHHHHHHHhCCCCCCCEeCChhhcCccCcccc
Confidence 865 43 33678 67764 9999999999986 7 6999999986 4444
No 39
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=99.32 E-value=1.8e-12 Score=142.84 Aligned_cols=165 Identities=21% Similarity=0.384 Sum_probs=114.0
Q ss_pred cccccceEEeeeccccccccC--C-CCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCeEEEE-Ec
Q 006680 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELK-LS 385 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~--g-~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~~~l~-ls 385 (635)
+|++||+++++++.+||+|.. | .+.||+|+|||+|.|+|+||++++ +++|+..+++++.++|+.|||+|.+. +.
T Consensus 284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLpyrvv~l~ 363 (484)
T 3lss_A 284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLPYRVVNIC 363 (484)
T ss_dssp SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcC
Confidence 889999999999999999984 4 579999999999999999999999 99999999999999999999998764 54
Q ss_pred cCCCCcCCCh-------hhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeee
Q 006680 386 TRPEKYLGDL-------ATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFN 458 (635)
Q Consensus 386 ~r~~~~lg~~-------~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~ 458 (635)
+.. +|.. |.| .|+.+.+ +.-..|. ..-||| +.|++
T Consensus 364 tgd---lg~~a~~~yDiE~w--------------------~P~~~~~-------------~EIsS~S-nc~dyq-Arr~~ 405 (484)
T 3lss_A 364 SGA---LNNAAAKKYDLEAW--------------------FPASGAF-------------RELVSCS-NCTDYQ-SQSVN 405 (484)
T ss_dssp TTT---CCSSCSEEEEEEEE--------------------ETTTTEE-------------EEEEEEE-ECTTHH-HHHHT
T ss_pred Ccc---cCCchhheechhee--------------------cCCCCCe-------------eEEEEec-Cccccc-ccccc
Confidence 432 2221 222 1222211 0001111 112566 56778
Q ss_pred eEEEecCCC--ccccccccccceee---eHHHHHHHHHHHhC---C-CCCCCCCCce--EEEEecCCC
Q 006680 459 LGYSAEDEA--KTERPVMIHRAILG---SVERMFAILLEHYK---G-KWPFWLSPRQ--AIVCPVSEK 515 (635)
Q Consensus 459 L~Y~~~~e~--~~~~p~~i~~ai~G---gveR~~~~l~e~~~---g-~~p~~lsp~q--v~v~p~~~~ 515 (635)
+.|.+...+ ....+-.+| ++.| ++.|++++|+|+|. | .+|..|.|+. .-+||+..+
T Consensus 406 iry~~~~~~~~~~~~~~~vh-tlNgt~~av~R~l~AiLEn~q~~dGi~iP~~L~pym~g~~~i~~~~~ 472 (484)
T 3lss_A 406 CRYGPNLRGTAAQNVKEYCH-MLNGTLCAITRTMCCICENYQTEEGVVIPDVLRPYMMGIEMIRFENN 472 (484)
T ss_dssp CEESSCCC----CCSCEECE-EEEEEEEEHHHHHHHHHHHHBCSSEEECCGGGGGGTTTCCEEECCCC
T ss_pred eEEeccccccccCCCceeee-EEeccchHHHHHHHHHHHhcCCCCCeeCChhhcCccCCcceeecCcc
Confidence 888754200 011233455 3333 79999999999885 3 4788788864 566777643
No 40
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=99.27 E-value=9e-13 Score=145.19 Aligned_cols=165 Identities=20% Similarity=0.355 Sum_probs=110.0
Q ss_pred ccccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEE-EccCC
Q 006680 313 FAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELK-LSTRP 388 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~-ls~r~ 388 (635)
|++||+++++++.+||+|..+ ...||+|+|||+|.|+|+||+++++++|+..+++++.++|+.|||+|.+. +.+.
T Consensus 264 y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLpyrvv~~~tg- 342 (485)
T 3qne_A 264 AEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLPYRVVGIVSG- 342 (485)
T ss_dssp HHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCEEEEECCGG-
T ss_pred hhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCCc-
Confidence 999999999999999999987 67999999999999999999999999999999999999999999998754 4332
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEE---cCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQI---NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~---~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~ 465 (635)
-+|..+. ..+.+ -|+.+.+ +.-..|. ...||| +.|+++.|.+..
T Consensus 343 --dlg~~a~----------------~tyDiE~w~P~~~~~-------------~Eiss~S-nc~dyq-Arr~~iry~~~~ 389 (485)
T 3qne_A 343 --ELNNAAA----------------KKYDLEAWFPFQQEY-------------KELVSCS-NCTDYQ-SRNLEIRCGIKQ 389 (485)
T ss_dssp --GCCTTCS----------------EEEEEEEEETTTTEE-------------EEEEEEE-ECTTHH-HHHTTCEECC--
T ss_pred --ccCCchh----------------hheeeeEeccCCCce-------------eEEEEec-CCcCcc-ccccceEEeccc
Confidence 1222110 00100 1222211 0001121 112555 467888997652
Q ss_pred --CCcccccccccc--ceeeeHHHHHHHHHHHhC---C-CCCCCCCCceE---EEEecCC
Q 006680 466 --EAKTERPVMIHR--AILGSVERMFAILLEHYK---G-KWPFWLSPRQA---IVCPVSE 514 (635)
Q Consensus 466 --e~~~~~p~~i~~--ai~GgveR~~~~l~e~~~---g-~~p~~lsp~qv---~v~p~~~ 514 (635)
.++. -.+|. +...++.|++++|+|+|. | .+|..|.|+.. .++|+..
T Consensus 390 ~~~~~~---~~vhtlNgt~lav~R~l~AiLEn~q~~dGi~iP~~L~py~~g~~~~i~~~~ 446 (485)
T 3qne_A 390 QNQQEK---KYVHCLNSTLSATERTICCILENYQKEDGLVIPEVLRKYIPGEPEFIPYIK 446 (485)
T ss_dssp ----CC---CBCEEEEEEEEEHHHHHHHHHHHSEETTEEECCHHHHTTSTTCCSEEECCC
T ss_pred ccCCCc---eeeEEEecchhHHHHHHHHHHHhcCCCCceecChhhcCccCCcceEeeccc
Confidence 1222 23452 122279999999999885 4 57877777642 5778764
No 41
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A
Probab=99.27 E-value=1.8e-12 Score=145.02 Aligned_cols=73 Identities=27% Similarity=0.491 Sum_probs=68.1
Q ss_pred cccccceEEeeeccccccccC--C-CCcCceeeceeeecCEEEEecCc--hhHHHHHHHHHHHHHHHHHhCCeEEEEE
Q 006680 312 AFAELPLRLADFGVLHRNEAS--G-ALTGLTRVRRFQQDDAHIFCRES--QIKDEVRGVLEFIDYAYRIFGFTYELKL 384 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~--g-~l~gLiRvREF~Q~d~~if~~~~--~~~~E~~~~l~~~~~~~~~~G~~~~l~l 384 (635)
+|++||++++++|.+||+|.. | ...||+|+|||+|.|+|+||+++ ++++|+..+++++.++|+.|||+|.+..
T Consensus 349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLpyrvv~ 426 (536)
T 3err_A 349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVE 426 (536)
T ss_dssp EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCcEEEEE
Confidence 899999999999999999984 4 57999999999999999999999 8999999999999999999999987653
No 42
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Probab=99.27 E-value=5.8e-13 Score=148.30 Aligned_cols=71 Identities=21% Similarity=0.349 Sum_probs=66.0
Q ss_pred cccccceEEee-eccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHH-HHHHHHHHHhCCeEEEEE
Q 006680 312 AFAELPLRLAD-FGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVL-EFIDYAYRIFGFTYELKL 384 (635)
Q Consensus 312 syrelPlrv~~-vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l-~~~~~~~~~~G~~~~l~l 384 (635)
+|+++|+++++ +|.+||+| +|...|++|+|||+|.|+|+||.++++++|+..++ .....+|+.||++ .+.+
T Consensus 339 s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~pe~s~ee~ee~i~~~~~~~l~~LGLp-~v~~ 411 (522)
T 2cja_A 339 PNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTKEEVLKCAEELHDRYMHIFNDILDIE-WRKA 411 (522)
T ss_dssp CGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHTSCCC-EEEE
T ss_pred ccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeChHHHHHHHHHHHHHHHHHHHHHcCCC-EEee
Confidence 77899999999 99999999 88889999999999999999999999999988899 8999999999999 6655
No 43
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}
Probab=99.27 E-value=3e-12 Score=142.05 Aligned_cols=165 Identities=21% Similarity=0.399 Sum_probs=113.4
Q ss_pred cccccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCeEEEE-Ec
Q 006680 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELK-LS 385 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~~~l~-ls 385 (635)
+|++||++++++|.+||+|.++ ...||+|+|||+|.|+|+||++++ +++|+..+++++.++|+.|||+|.+. +.
T Consensus 286 s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGLpyrvv~l~ 365 (522)
T 3vbb_A 286 RPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGIPYHIVNIV 365 (522)
T ss_dssp CTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCCceEEEEcC
Confidence 7899999999999999999973 579999999999999999999998 99999999999999999999998654 44
Q ss_pred cCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEE---cCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEE
Q 006680 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQI---NEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYS 462 (635)
Q Consensus 386 ~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~---~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~ 462 (635)
+. -+|..+. ..+.+ -|+.+.+- .-..|.. .-||| +.|+++.|.
T Consensus 366 tg---dlg~~as----------------ktyDiE~w~P~~~~y~-------------EIsScSn-c~Dyq-Arr~~iry~ 411 (522)
T 3vbb_A 366 SG---SLNHAAS----------------KKLDLEAWFPGSGAFR-------------ELVSCSN-CTDYQ-ARRLRIRYG 411 (522)
T ss_dssp GG---GCCTTCS----------------EEEEEEEEETTTTEEE-------------EEEEEEE-CTTHH-HHHHTCEES
T ss_pred Cc---cCCCchh----------------heeceeEecCCCCcee-------------EEEEecC-CCCCc-cceeeeEEc
Confidence 42 1222110 00100 12222110 0011111 12555 467788887
Q ss_pred ecC--CCccccccccccceee---eHHHHHHHHHHHhC---C-CCCCCCCCceE----EEEecCC
Q 006680 463 AED--EAKTERPVMIHRAILG---SVERMFAILLEHYK---G-KWPFWLSPRQA----IVCPVSE 514 (635)
Q Consensus 463 ~~~--e~~~~~p~~i~~ai~G---gveR~~~~l~e~~~---g-~~p~~lsp~qv----~v~p~~~ 514 (635)
+.. .++. ..+| ++.| ++.|++++|+|+|. | .+|..|.|+.. .|+|+..
T Consensus 412 ~~~~~~~k~---~~vh-tlNgs~lav~R~l~AiLEn~q~~dGi~iP~~L~Py~~~~~~~~ip~~~ 472 (522)
T 3vbb_A 412 QTKKMMDKV---EFVH-MLNATMCATTRTICAILENYQTEKGITVPEKLKEFMPPGLQELIPFVK 472 (522)
T ss_dssp CC---CCCC---CBCE-EEEEEEEEHHHHHHHHHHHHBCSSEEECCHHHHTTSCTTSSSEEECCS
T ss_pred cccccCCCe---eece-EEeccchHHHHHHHHHHHhCCCCCCeecChHhcCeeCCCcceEeecCC
Confidence 641 1232 2345 2322 69999999999885 4 47888888876 7899875
No 44
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=99.21 E-value=6.9e-12 Score=134.73 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=57.6
Q ss_pred cccceEEeeeccccccccCCCCc--CceeeceeeecCEEEEecC-ch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 314 AELPLRLADFGVLHRNEASGALT--GLTRVRRFQQDDAHIFCRE-SQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~--gLiRvREF~Q~d~~if~~~-~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
+++|+|++++|++||+|++|.+. +.+|.|||+|+|+|+||.+ +. +|+| ++.++.++|+.||++ +.++|||+.
T Consensus 114 ~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaE---vi~l~~~~l~~lgl~~~~i~l~~~~ 190 (373)
T 3rac_A 114 GRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMD---VLRLLHEASAAAGVRHHRIVVSHAR 190 (373)
T ss_dssp TCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHH---HHHHHHHHHHHHTCCSCEEEEEETT
T ss_pred CCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHH---HHHHHHHHHHHcCCCceEEEecCHH
Confidence 57899999999999999996544 5589999999999999999 54 7777 999999999999996 999999986
No 45
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*
Probab=99.18 E-value=1.1e-11 Score=127.89 Aligned_cols=89 Identities=15% Similarity=0.017 Sum_probs=78.0
Q ss_pred ccc-cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC-
Q 006680 313 FAE-LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP- 388 (635)
Q Consensus 313 yre-lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~- 388 (635)
+++ +|+|++++|++||+|++|. |||+|+|+||||.+++ +|+| ++.++.++|+.||++ +.++|||++
T Consensus 65 ~~~~~p~R~~y~g~vfR~e~~~~-------Ref~Q~g~ei~g~~~~~~DaE---vi~l~~~~l~~lgl~~~~i~l~~~~~ 134 (275)
T 1usy_A 65 YSPDSQIKVWYADFVYRYSGSDL-------VAEYQLGLEKVPRNSLDDSLE---VLEIIVESASEFFEGPVIVEIGHTGV 134 (275)
T ss_dssp CTTCCCEEEECCEEEEEEETTEE-------EEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHCCSCEEEEEEETTH
T ss_pred cCCCCceEEEEeceEEecCCCCC-------CeeeEeCEEEecCCCchhHHH---HHHHHHHHHHHcCCCCeEEEeCCHHH
Confidence 567 9999999999999999884 9999999999999999 8888 999999999999997 999999997
Q ss_pred -CCcCCChhhHHHHHHHHHHHHHHcC
Q 006680 389 -EKYLGDLATWEKAEAALTEALNEFG 413 (635)
Q Consensus 389 -~~~lg~~~~~~~a~~~l~~~l~~~g 413 (635)
+..++. .|+.++.+|.++|++.+
T Consensus 135 ~~~~~~~--~~~~~~~~l~~~l~~~~ 158 (275)
T 1usy_A 135 YEDLLKE--IPKDLHEKVLNLIDTKN 158 (275)
T ss_dssp HHHHHTT--SCGGGHHHHHHHHHTTC
T ss_pred HHHHHHh--CCHHHHHHHHHHHHccC
Confidence 556654 67777778888877654
No 46
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=99.08 E-value=1.7e-10 Score=94.94 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=61.3
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChh
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDE 149 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~e 149 (635)
.|+|++|||+.++++. |+|+.|+|+.++..+++.+++|+|||+++||+++|+.+|.|+|+++++.+
T Consensus 2 ~i~i~~p~g~~~~~~~-g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veivt~~~~~ 67 (73)
T 2kmm_A 2 EVMVFTPKGEIKRLPQ-GATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVLSSKSLE 67 (73)
T ss_dssp CEEEECTTCCEEEECT-TCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEEECCCCC
T ss_pred eEEEEcCCCCEEEcCC-CCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEEECCCCc
Confidence 4899999999999888 99999999999888888999999999999999999999999999998753
No 47
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*
Probab=99.08 E-value=1.9e-10 Score=121.38 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=65.1
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEEEEccC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYELKLSTR 387 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r 387 (635)
+.|+++..+|.|||+|.+ .|++|+++|+|+|+++||+++|+.+|+..+++.+..+|+.|||+|++.+++.
T Consensus 166 ~~plr~~~~g~CFR~EaS---~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~LgLpyrv~~~~D 235 (346)
T 3mf2_A 166 KGGLRFDVAADCFRREPS---KHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARDLGLTFRVDYASD 235 (346)
T ss_dssp TTCEEEEEEEEEECCCCC---SSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTCCCEEEECCC
T ss_pred ccCeEEEEECCccCCcCC---CCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEccC
Confidence 448999999999999995 5999999999999999999999999999999999999999999999988654
No 48
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.83 E-value=5.6e-09 Score=87.99 Aligned_cols=67 Identities=15% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCCChh
Q 006680 82 DPIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFDSDE 149 (635)
Q Consensus 82 ~~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~e 149 (635)
+.|.|+.|||..++.++ |+|+.|+|..|+...++.+++|+|||++++|++||+.++.|++++.+.-+
T Consensus 6 ~~i~v~tP~G~~~~lp~-GaT~~D~A~~Ih~~lg~~~v~AkVNG~~v~L~~~L~~gd~VeIit~~~~~ 72 (78)
T 3hvz_A 6 EEVFVFTPKGDVISLPI-GSTVIDFAYAIHSAVGNRMIGAKVDGRIVPIDYKVKTGEIIDVLTTKELE 72 (78)
T ss_dssp CEEEEECTTSCEEEEET-TCBHHHHHHHHCHHHHHTEEEEEETTEEECTTCBCCTTCBEEEEECC---
T ss_pred ceEEEECCCCCEEEecC-CCCHHHHHHHhhhhhhcceEEEEECCEEcCCCcccCCCCEEEEEccCccc
Confidence 56999999999999999 99999999999999999999999999999999999999999999987654
No 49
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*
Probab=98.81 E-value=3.1e-09 Score=112.86 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=57.3
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r 387 (635)
++++|+|++++|++||+|+++. +|+|||+|+|+|+||.+++ +|+| ++.++.++|+.||++ +.+.+|++
T Consensus 113 ~~~~P~rl~y~g~vfR~e~p~~----gR~REF~Q~g~ei~g~~~~~aDaE---vi~l~~~~l~~lgl~~~~i~l~~~ 182 (344)
T 1z7m_A 113 KDSTSARYSYFGKIFRKEKRHK----GRSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLNKTVFEIGSA 182 (344)
T ss_dssp CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHH---HHHHHHHHHHHHTCSSEEEEEEEH
T ss_pred CCCCCeEEEEECcEEccCCCCC----CCcceeEEEEEEEEcCCCcHHHHH---HHHHHHHHHHHCCCCcEEEEECCH
Confidence 5679999999999999998886 7999999999999999887 8888 899999999999997 99999988
No 50
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A
Probab=97.58 E-value=7.8e-05 Score=77.23 Aligned_cols=64 Identities=17% Similarity=0.319 Sum_probs=55.2
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~l 384 (635)
+++|++++++|.+||+|.++. +|++||+|.++++||.+++ ...| +..++..+++.||++ |.+.-
T Consensus 146 ~~~PlrlfeiG~vFR~E~~~~----~r~~EF~qle~~i~g~~~~~~f~e---lkg~le~ll~~LGl~~~~~~~ 211 (288)
T 3dsq_A 146 WDKPIRIFEIGTCYRKESQGA----QHLNEFTMLNLTELGTPLEERHQR---LEDMARWVLEAAGIREFELVT 211 (288)
T ss_dssp SCSCEEEEEEEEEECSCCSSS----CCCSEEEEEEEEEETCCGGGHHHH---HHHHHHHHHHHHTCCCCEEEE
T ss_pred CCCCEEEEEEeeEEecCCCCC----CcCccEEEEEEEEEcCCchhhHHH---HHHHHHHHHHHcCCCCcEEec
Confidence 678999999999999999876 7899999999999999876 4455 889999999999994 66543
No 51
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*
Probab=95.99 E-value=0.0084 Score=61.72 Aligned_cols=61 Identities=13% Similarity=0.262 Sum_probs=50.2
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCeEEE
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFTYEL 382 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~~~l 382 (635)
...|++++++|.+||.|..+. .+.+||+|.|++++|.... ..| +..++..+++.+|++|.+
T Consensus 152 ~~~p~rlfeiG~vFR~E~~~~----~~~~Ef~ql~~~~~g~~~~-f~e---lkg~le~ll~~lGl~~~~ 212 (290)
T 3qtc_A 152 LPDPIKIFEIGPCYRKESDGK----EHLEEFTMLVFWQMGSGCT-REN---LESIITDFLNHLGIDFKI 212 (290)
T ss_dssp SCSSEEEEEEEEEECCCSCSS----SCCSEEEEEEEEEESTTCC-HHH---HHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEEcCEEecCCCCC----cCcchheEEEEEEEcCChH-HHH---HHHHHHHHHHHcCCCcEE
Confidence 477899999999999997654 6899999999999997643 345 677888888899987654
No 52
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=94.67 E-value=0.041 Score=46.97 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=46.4
Q ss_pred CCCeEEEeCCCcEEEeeccC-CCHHHHHhhhccccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 006680 81 HDPIKITLPDGSVKEGKRWE-TSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (635)
Q Consensus 81 ~~~I~Itl~dg~~~~~~~~~-tTp~diak~is~~~~~~iV~AkVNg~l~DL----~~pl~~d~~lefl~f 145 (635)
+..++|++ +|+.++... + +|+.++.+.+.. ....+++.|||++.+- +++|....+|+++.+
T Consensus 18 ~~~M~I~v-NGe~~el~~-~~~Tv~dLL~~L~~--~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 18 GGRHMLQL-NGKDVKWKK-DTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp ----CEEE-TTEEECCSS-SCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred CcceEEEE-CCEEEECCC-CCCcHHHHHHHhCC--CCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 34577888 788888777 5 999999999853 3455678899999886 578999899999875
No 53
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=93.75 E-value=0.09 Score=41.96 Aligned_cols=57 Identities=7% Similarity=0.126 Sum_probs=46.1
Q ss_pred EEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 006680 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (635)
Q Consensus 85 ~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL----~~pl~~d~~lefl~f 145 (635)
+|++ +|+.++... ++|+.++.+.+.. ...-++.-|||++.+- +++|....+|+++.+
T Consensus 2 ~i~v-Ng~~~~~~~-~~tv~~ll~~l~~--~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 2 QILF-NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CEEE-SSCEECCCT-TCCHHHHHHHHTC--CCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 5666 788888777 8999999998863 3455678899999876 789999889999875
No 54
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=93.62 E-value=0.11 Score=42.07 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=46.6
Q ss_pred CeEEEeCCCcE----EEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 83 PIKITLPDGSV----KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 83 ~I~Itl~dg~~----~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
.++|++ +|+. ++... ++|+.++.+.+... ...+++-|||++.+.+.+|....+|+++.+
T Consensus 4 ~m~i~v-Ng~~~~~~~~~~~-~~tv~~Ll~~l~~~--~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTV-ITDDGKKILESGA-PRRIKDVLGELEIP--IETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEE-EETTEEEEEEESS-CCBHHHHHHHTTCC--TTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred eEEEEE-eCccCceeEECCC-CCcHHHHHHHhCCC--CCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 367777 5554 66666 79999999988543 344577899999999999999999999875
No 55
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.05 E-value=0.076 Score=43.79 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=46.1
Q ss_pred CeEEEeCCCcE---EEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeCC
Q 006680 83 PIKITLPDGSV---KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTFD 146 (635)
Q Consensus 83 ~I~Itl~dg~~---~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f~ 146 (635)
+|+|++. |.. .+.+. ++|+.|+.+.+.-. ..-|++.|||+..+.+.+++ ..+|+++.+=
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~-g~Tv~dLL~~Lgl~--~~~VvV~vNG~~v~~d~~l~-GD~VeIv~~V 63 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDD-DGTYADLVRAVDLS--PHEVTVLVDGRPVPEDQSVE-VDRVKVLRLI 63 (74)
T ss_dssp EEEEECS-SSSEEEEECST-TCSHHHHHHTTCCC--SSCCCEECCCCCCCTTSSSC-CCCEEECSSC
T ss_pred EEEEEEe-CccceeEEcCC-CCcHHHHHHHcCCC--cceEEEEECCEECCHHHCCC-CCEEEEEEee
Confidence 4788885 544 56666 89999999998643 33447899999999999997 5689998874
No 56
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=92.79 E-value=0.1 Score=43.41 Aligned_cols=59 Identities=10% Similarity=0.234 Sum_probs=46.4
Q ss_pred eEEEeCCCcEEEee--ccCCCHHHHHhhhccccccceEEEEEcCEEeecc----ccccCCCCeEEeeC
Q 006680 84 IKITLPDGSVKEGK--RWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (635)
Q Consensus 84 I~Itl~dg~~~~~~--~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~----~pl~~d~~lefl~f 145 (635)
++|++ +|+.++.. . ++|+.++...++-.- ..-+++.|||++.+-. ++|....+|+++++
T Consensus 1 M~I~v-NGe~~e~~~~~-~~Tl~~LL~~l~~~~-~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 1 MNLTV-NGKPSTVDGAE-SLNVTELLSALKVAQ-AEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp CEEEE-TTEEEECSSCS-CEEHHHHHHHHTCSC-TTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred CEEEE-CCEEEEcCCCC-CCcHHHHHHHcCCCC-CCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 46777 78888876 6 799999999876320 3455678999998875 88999899999986
No 57
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=92.76 E-value=0.24 Score=39.26 Aligned_cols=55 Identities=11% Similarity=0.186 Sum_probs=44.4
Q ss_pred EEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeecc----ccccCCCCeEEeeC
Q 006680 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTF 145 (635)
Q Consensus 86 Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~----~pl~~d~~lefl~f 145 (635)
|++ +|+.++. . ++|+.++.+.+... ...++..|||++.+.. ++|....+|+++.+
T Consensus 2 i~v-Ng~~~~~-~-~~tv~~ll~~l~~~--~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 2 VWL-NGEPRPL-E-GKTLKEVLEEMGVE--LKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEE-TTEEECC-T-TCCHHHHHHHHTBC--GGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEE-CCEEEEc-C-CCcHHHHHHHcCCC--CCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 455 7888887 6 89999999988643 4456778999999866 89999999999875
No 58
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=92.64 E-value=0.11 Score=42.73 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=45.2
Q ss_pred EEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeecc----ccccCCCCeEEeeCC
Q 006680 85 KITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMT----RPLEADCDLKLFTFD 146 (635)
Q Consensus 85 ~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~----~pl~~d~~lefl~f~ 146 (635)
+|++ +|+.++. . ++|+.++.+.+.- ...-+++.|||++.+-. ++|....+|+++++-
T Consensus 2 ~I~v-NG~~~e~-~-~~Tl~~LL~~l~~--~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 2 LVTI-NGEQREV-Q-SASVAALMTELDC--TGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp CEEE-TTEEECC-C-CSBHHHHHHHTTC--CSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECCC
T ss_pred EEEE-CCEEEEc-C-CCcHHHHHHHcCC--CCCcEEEEECCEECChHHcCcccCCCCCEEEEEccc
Confidence 5677 7888877 5 7999999998763 34456788999998774 789998999999873
No 59
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=91.12 E-value=0.16 Score=52.39 Aligned_cols=37 Identities=16% Similarity=-0.001 Sum_probs=30.1
Q ss_pred ceEEeeeccccccccCCCCcCceeec-eeeecCEEEEecC
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRE 355 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvR-EF~Q~d~~if~~~ 355 (635)
+.|++++|++||+|.++.-+ .|-+ ||+|.|++..+.+
T Consensus 88 ~~rvf~ig~~FR~E~pq~~~--~RH~~EFtqle~e~~~~~ 125 (294)
T 1nnh_A 88 LKKIFVLSPNIRLESRQKDD--GRHAYEFTQLDFEVERAK 125 (294)
T ss_dssp CCEEEEEEEEECCCCGGGCS--SSCCSEEEEEEEEEETCC
T ss_pred ccceEEEEccEeCCCCCCCC--CccccceeEEEEEecCCC
Confidence 67999999999999954201 3666 9999999999875
No 60
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=88.38 E-value=0.36 Score=52.39 Aligned_cols=36 Identities=14% Similarity=0.069 Sum_probs=21.3
Q ss_pred ceEEeeeccccccccCCCCcCceeec-eeeecCEEEEecCc
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRES 356 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvR-EF~Q~d~~if~~~~ 356 (635)
.-|+|++|++||+|.+.. .|-+ ||+|.|++..+.++
T Consensus 190 ~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~d 226 (422)
T 1n9w_A 190 FERVYEVAPVWRMEEHHT----SRHLNEYLSLDVEMGFIAD 226 (422)
T ss_dssp HSEEEEEEEC-----------------CCEEEEEEEESCSS
T ss_pred CCceeEEeCceECCCCCC----CcccceeEEeeeeeeCCCC
Confidence 359999999999998865 5777 99999999999844
No 61
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=87.90 E-value=0.45 Score=51.80 Aligned_cols=35 Identities=14% Similarity=0.037 Sum_probs=30.9
Q ss_pred ceEEeeeccccccccCCCCcCceeec-eeeecCEEEEecC
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRE 355 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvR-EF~Q~d~~if~~~ 355 (635)
+-|++++|++||+|.+.. .|-+ ||+|.|++..+.+
T Consensus 200 ~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~ 235 (434)
T 1x54_A 200 LEKVWSLTPSFRAEKSRT----RRHLTEFWHLELEAAWMD 235 (434)
T ss_dssp HSEEEEEEEEECCCCCCC----SSCCSEEEEEEEEEETCC
T ss_pred ccceEEEecceecCCCCC----cccccEEEEeeEEEcCCC
Confidence 679999999999998765 5777 9999999998875
No 62
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=86.98 E-value=0.47 Score=52.38 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=35.3
Q ss_pred ceEEeeeccccccccCCCCcCceeec-eeeecCEEE-EecC-chhHHHHHHHHH
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHI-FCRE-SQIKDEVRGVLE 367 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvR-EF~Q~d~~i-f~~~-~~~~~E~~~~l~ 367 (635)
+-|+|++|++||+|.++. .|-+ ||+|.|++. |+.. +.+-+.+..++.
T Consensus 244 ~~rvy~ig~~FR~E~~~~----~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~ 293 (487)
T 1eov_A 244 FERVYEIGPVFRAENSNT----HRHMTEFTGLDMEMAFEEHYHEVLDTLSELFV 293 (487)
T ss_dssp CCEEEEEEEEECCCCCCC----TTCCSEEEEEEEEEECSSCTHHHHHHHHHHHH
T ss_pred CCceEEEeccEecCCCCC----CccchhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 469999999999999875 5877 999999997 8764 334444334443
No 63
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=86.64 E-value=0.59 Score=50.81 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=30.8
Q ss_pred ceEEeeeccccccccCCCCcCceeec-eeeecCEEEEecC
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVR-RFQQDDAHIFCRE 355 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvR-EF~Q~d~~if~~~ 355 (635)
+-|+|++|++||+|.+.. .|-+ ||+|.|++..+.+
T Consensus 199 ~~rvf~ig~~FR~E~~~~----~RH~pEFtqle~e~~~~~ 234 (429)
T 1wyd_A 199 VERVFEVAPAWRAEESDT----PFHLAEFISMDVEMAFAD 234 (429)
T ss_dssp HSEEEEEEEEECCCCCCS----SSCCSEEEEEEEEEETCC
T ss_pred cCceEEEcccccccCCcc----ccccceeeEeeeeecCCC
Confidence 569999999999998865 5776 9999999998876
No 64
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=84.02 E-value=0.9 Score=50.26 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=31.1
Q ss_pred ceEEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 317 PLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 317 Plrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
.-|+|++|++||+|.++. .+..||+|.|++....+
T Consensus 242 ~~rVyeig~~FR~E~~~~----rH~pEFT~lE~e~af~d 276 (493)
T 3a74_A 242 LEKVYEIGRVFRNEGIST----RHNPEFTMLELYEAYAD 276 (493)
T ss_dssp CCEEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCC
T ss_pred cCceEEECccccCCCCCc----ccCCceeEEEEEecCCC
Confidence 358999999999999876 79999999999987765
No 65
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=83.90 E-value=0.66 Score=38.08 Aligned_cols=53 Identities=13% Similarity=0.070 Sum_probs=41.7
Q ss_pred CCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 90 DGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 90 dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++..++.+. ++|+.|+.+.+... ...+++.|||++.+.+++|..+.+|+++..
T Consensus 21 n~~~~~~~~-~~Tv~dLl~~L~~~--~~~v~VavNg~~v~~~~~L~dGD~V~i~pp 73 (77)
T 1rws_A 21 IEKEIEWRE-GMKVRDILRAVGFN--TESAIAKVNGKVVLEDDEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCCCCS-SCCHHHHHHTTTCS--SCSSCEEETTEEECSSSCCCSSCCCBCSCC
T ss_pred CCEEEECCC-CCcHHHHHHHhCCC--CcCEEEEECCEECCCCCCcCCCCEEEEEcc
Confidence 555555555 78999999988643 344577899999999999999999998764
No 66
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=81.09 E-value=1 Score=47.45 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=34.7
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecCc-hhHHHHHHHHHH
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-QIKDEVRGVLEF 368 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~-~~~~E~~~~l~~ 368 (635)
|+|++|++||+|..+. -+..||+|.|++.-..+- .+-+.+.+++..
T Consensus 111 rvyqIg~~FR~E~~~~----rH~pEFt~lE~e~af~d~~d~m~~~E~li~~ 157 (345)
T 3a5y_A 111 PVFQLCRSFRNEEMGR----YHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ 157 (345)
T ss_dssp SEEEEEEEECCCCCBT----TBCSEEEEEEEEEETCCHHHHHHHHHHHHHH
T ss_pred cEEEEEcceeCCCCcc----cccchhheeeeeeeCCCHHHHHHHHHHHHHH
Confidence 8999999999999876 789999999999766542 244444444443
No 67
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=80.12 E-value=1.7 Score=48.18 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=29.7
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
=|+|++|++||+|..+. .+..||+|.|++....+
T Consensus 252 ~rVyeIg~~FR~E~~~~----rH~pEFt~lE~e~af~d 285 (504)
T 1e1o_A 252 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYAD 285 (504)
T ss_dssp CEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCC
T ss_pred CcEEEEcccccCCCCCc----cccCceeeeeeeecCCC
Confidence 48999999999999876 78999999999987765
No 68
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=79.96 E-value=4.4 Score=34.83 Aligned_cols=53 Identities=17% Similarity=0.056 Sum_probs=44.3
Q ss_pred EEeeccCCCHHHHHhhhccccccceEEEEE-------cCEEeeccccccCCCCeEEeeCC
Q 006680 94 KEGKRWETSPMDIAQGISKSLAANALISMV-------NGVLWDMTRPLEADCDLKLFTFD 146 (635)
Q Consensus 94 ~~~~~~~tTp~diak~is~~~~~~iV~AkV-------Ng~l~DL~~pl~~d~~lefl~f~ 146 (635)
+.....++|+.|+|..|.....+....|.| |++-+.|++.|+....|++++-.
T Consensus 29 viL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~Iv~~~ 88 (93)
T 2eki_A 29 VVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKKS 88 (93)
T ss_dssp EEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECEEECC
T ss_pred EEEecCCCCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEEEeCC
Confidence 445234999999999999999999888776 89999999999977778888754
No 69
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=77.46 E-value=2 Score=36.74 Aligned_cols=46 Identities=17% Similarity=0.131 Sum_probs=37.0
Q ss_pred CCCHHHHHhhhccccc-------------cceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSLA-------------ANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~~-------------~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++|+.++...+...++ .+.++..|||+.++++++|..+.+|.++..
T Consensus 36 ~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~~~~L~dGDeV~i~pp 94 (98)
T 1vjk_A 36 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFPP 94 (98)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEESC
T ss_pred CCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCCCCCCCCCCEEEEECC
Confidence 6899999888765432 245778899999999999999999998764
No 70
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=76.03 E-value=3.7 Score=45.48 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=48.3
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
..|++++++|.+||++.... .++.+|+|.+.-+.+.. .--.+ +..++..+++.||+. ++++-+.-|
T Consensus 345 ~~PiriFeiGrVFR~d~~Da----tHlpeFhQlegl~~~~~-v~f~d---LKg~Le~~l~~lG~~~~rfrps~fP 411 (508)
T 3l4g_A 345 FTPVKYFSIDRVFRNETLDA----THLAEFHQIEGVVADHG-LTLGH---LMGVLREFFTKLGITQLRFKPAYNP 411 (508)
T ss_dssp CCCEEEEEEEEEECCSCCCS----SSCSEEEEEEEEEEEES-CCHHH---HHHHHHHHHHTTTCCCCEEEECCCT
T ss_pred CCCceEEEEccEEecCCCCC----CcCCeEEEEEEEEECCC-CCHHH---HHHHHHHHHHHcCCcceEeeccCCC
Confidence 47899999999999998665 67889999998776533 23344 566677788888984 665554433
No 71
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*
Probab=71.13 E-value=7.4 Score=43.36 Aligned_cols=63 Identities=22% Similarity=0.381 Sum_probs=46.8
Q ss_pred cccceEEeeeccccccccC-CCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEE
Q 006680 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKL 384 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~-g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~l 384 (635)
+..|++++++|.+||.+.. +. .+.+||+|.++-+.|..... .+ +...+..+++.||+. ++++-
T Consensus 202 ~~~pvrLFEIG~VFr~d~~~d~----th~~Ef~qLagli~G~~vdf-~d---LKgilE~LL~~LGi~~~r~~~ 266 (534)
T 2du3_A 202 LPLPIKLFSIDRCFRREQGEDA----TRLYTYFSASCVLVDEELSV-DD---GKAVAEALLRQFGFENFRFRK 266 (534)
T ss_dssp SCSSEEEEEEEEEECCCTTCSS----SCCSEEEEEEEEEECSSCCH-HH---HHHHHHHHHGGGTCCEEEEEE
T ss_pred CCCCeeEEEEeeEEecCccccc----cccceeeEEEEEEECCCCCH-HH---HHHHHHHHHHHcCCCeEEEEE
Confidence 3678999999999998654 44 46799999999998874332 33 566677778888985 55553
No 72
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=69.19 E-value=7.6 Score=31.99 Aligned_cols=46 Identities=15% Similarity=0.234 Sum_probs=35.9
Q ss_pred CCCHHHHHhhhccccc-------------cceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSLA-------------ANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~~-------------~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
++|+.++...+...++ .+.+++.|||+.++ ++++|..+.+|.++..
T Consensus 24 ~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~~~~~l~~gD~V~i~pp 86 (90)
T 2g1e_A 24 ISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMKGLDTEIKDDDKIDLFPP 86 (90)
T ss_dssp CCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTCSSSCBCCTTCEEEEECC
T ss_pred CCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccCCCCcCCCCCCEEEEeCC
Confidence 6899999888765431 13467889999986 8999999889998864
No 73
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=68.78 E-value=12 Score=30.07 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=35.6
Q ss_pred CCCHHHHHhhhcccc-------ccceEEEEEcCEEeeccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSL-------AANALISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~-------~~~iV~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++|+.++...+...+ ...-++.-|||+..+++++|..+.+|.++..
T Consensus 25 ~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~~~~l~~gD~V~i~Pp 77 (81)
T 1fm0_D 25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPP 77 (81)
T ss_dssp CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEECC
T ss_pred CCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCCCCCCCCCCEEEEeCC
Confidence 678999888876432 1223567899999999999999999998753
No 74
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=65.25 E-value=5.1 Score=45.49 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=28.7
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
++|++|++||+|..+. -|.-||+|.|++.-..+
T Consensus 218 rvfqi~~~FR~E~~~t----~r~pEFt~lE~e~af~d 250 (617)
T 4ah6_A 218 RYFQVARCYRDEGSRP----DRQPEFTQIDIEMSFVD 250 (617)
T ss_dssp EEEEEEEEECCCSSCS----SSCSEEEEEEEEEESCC
T ss_pred cEEEEEhheecccCCC----CcCcceecceeeecCCC
Confidence 8999999999998887 67899999999975443
No 75
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=63.82 E-value=5.1 Score=32.14 Aligned_cols=46 Identities=9% Similarity=0.017 Sum_probs=35.3
Q ss_pred CCCHHHHHhhhcccccc-ceE--EEEEcCEEeeccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSLAA-NAL--ISMVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~~~-~iV--~AkVNg~l~DL~~pl~~d~~lefl~f 145 (635)
++|+.++...+...++. .-+ +.-|||+..+.+++|..+.+|+++..
T Consensus 25 ~~tv~~ll~~l~~~~p~~~~v~~~v~vNg~~v~~~~~L~~gD~V~i~pp 73 (77)
T 2q5w_D 25 ALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPP 73 (77)
T ss_dssp CEEHHHHHHHHHHHCGGGTTCCCEEEETTEEECTTSEECTTCEEEEECS
T ss_pred CCCHHHHHHHHHHHCcchhcceEEEEECCEECCCCCCcCCCCEEEEECC
Confidence 56888988887654321 223 67799999999999999989999864
No 76
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=63.06 E-value=7.6 Score=32.11 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.0
Q ss_pred CCCHHHHHhhhcccccc-------------ceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLAA-------------NALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~~-------------~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++|+.++...+...++. +.+..-|||+.++++++|..+.+|.|+.
T Consensus 27 ~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~~~l~~gDeV~i~P 84 (89)
T 3po0_A 27 DATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALGEATAAGDELALFP 84 (89)
T ss_dssp TCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTTSBCCTTCEEEEEC
T ss_pred CCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCCcccCCCCEEEEEC
Confidence 67888888877654321 1266779999999999999998998875
No 77
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=62.19 E-value=6 Score=34.18 Aligned_cols=58 Identities=3% Similarity=-0.115 Sum_probs=39.9
Q ss_pred EEeeccCCCHHHHHhhhcccccc-----ceEEEEEcCEEeeccccccCCCCeEEeeCCChhHHH
Q 006680 94 KEGKRWETSPMDIAQGISKSLAA-----NALISMVNGVLWDMTRPLEADCDLKLFTFDSDEGRD 152 (635)
Q Consensus 94 ~~~~~~~tTp~diak~is~~~~~-----~iV~AkVNg~l~DL~~pl~~d~~lefl~f~s~eG~~ 152 (635)
.+.+. |+|+.|+....+-.... ..++.-|||+..+++++|.....||++.+=..|-+.
T Consensus 30 ~~v~~-g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~d~~L~dGDRVEIyrpl~~DPk~ 92 (97)
T 2hj1_A 30 FQVDE-GITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKLTDVLKEGDRIEIYRPLLADPKE 92 (97)
T ss_dssp EEEET-TCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCTTCBCCTTCEEEECCCCC-----
T ss_pred EEcCC-CCcHHHHHHHcCCCccCCcccccccEEEEcCEECCCCccCCCCCEEEEEecccCCHHH
Confidence 34445 99999999887642111 135677999999999999999999987765444443
No 78
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=58.97 E-value=7.6 Score=42.09 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=32.4
Q ss_pred eEEeeeccccccccCCCCcCcee-eceeeecCEEEEecCc-hhHHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRES-QIKDEVRGVLEF 368 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiR-vREF~Q~d~~if~~~~-~~~~E~~~~l~~ 368 (635)
=|+|++|++||+|.+.. -| .-||+|.|++.-..+- .+-+.+..++..
T Consensus 198 ~rvfeIg~~FR~E~~~t----~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~ 246 (435)
T 2xgt_A 198 GDVFCIAQSYRAEKSRT----RRHLAEYAHVEAECPFITLDDLMEKIEELVCD 246 (435)
T ss_dssp CSEEEEEEEECCCSSCC----TTCCSEEEEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CceEEEecceecCCCCc----cccccceeEEEEEEecCCHHHHHHHHHHHHHH
Confidence 38999999999998643 24 4499999999776652 244444444433
No 79
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=56.57 E-value=9.4 Score=42.41 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.7
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
|+|++|++||+|..+. -..-||+|.|++.-..+
T Consensus 246 rVyeig~~FR~E~~~t----rH~pEFtmlE~e~af~d 278 (521)
T 3bju_A 246 RVYEIGRQFRNEGIDL----THNPEFTTCEFYMAYAD 278 (521)
T ss_dssp EEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCC
T ss_pred ceEEEEcceeCCCCCC----ccchhhhhhhhhhhcCC
Confidence 8999999999998875 58899999999976554
No 80
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=55.98 E-value=10 Score=42.64 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=32.4
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHH
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVL 366 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l 366 (635)
|+|++|.+||+|..+. -|-=||+|.|++.-..+ +.+-+.+.+++
T Consensus 214 rvfqI~~~FR~E~~~~----~r~pEFT~lE~e~af~d~~dvm~~~E~li 258 (580)
T 1l0w_A 214 RYFQIARCFRDEDLRA----DRQPDFTQLDLEMSFVEVEDVLELNERLM 258 (580)
T ss_dssp EEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCCHHHHHHHHHHHH
T ss_pred CeEEEeceeeCCCCCC----CcCCCccceeeeecCCCHHHHHHHHHHHH
Confidence 8999999999999887 56669999999965544 23444433333
No 81
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=55.81 E-value=10 Score=42.78 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.9
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHHH
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLE 367 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l~ 367 (635)
|+|++|.+||+|.... -|-=||+|.|++.-..+ +.+-+.+.+++.
T Consensus 208 rvfqI~~~FR~E~~~t----~r~pEFT~lE~e~af~d~~dvm~~~E~li~ 253 (585)
T 1c0a_A 208 RYYQIVKCFRDEDLRA----DRQPEFTQIDVETSFMTAPQVREVMEALVR 253 (585)
T ss_dssp EEEEEEEEECCCCCBT----TBCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred ceEEEeceeecCCCCC----CcCcccceeeeeecCCCHHHHHHHHHHHHH
Confidence 8999999999999886 56669999999965544 234444333433
No 82
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=55.27 E-value=10 Score=42.23 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=28.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
=++|++|++||+|..+. -+.-||+|.|++.-..+
T Consensus 273 ~rVyeIg~~FR~E~~~~----rH~pEFtmlE~e~af~d 306 (529)
T 4ex5_A 273 ERVFEINRNFRNEGVSP----RHNPEFTMMEFYAAYTD 306 (529)
T ss_dssp SEEEEEEEEECCSCCBT----TBCSEEEEEEEEEETCC
T ss_pred CcEEEeehheecCCCCC----CcccHhHhhhhhhhcCC
Confidence 38999999999998775 68999999999975543
No 83
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=54.90 E-value=12 Score=40.68 Aligned_cols=48 Identities=15% Similarity=0.186 Sum_probs=34.1
Q ss_pred eEEeeeccccccccCCCCcCcee-eceeeecCEEEEecCc--hhHHHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRES--QIKDEVRGVLEFI 369 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiR-vREF~Q~d~~if~~~~--~~~~E~~~~l~~~ 369 (635)
=++|++|++||+|.... .| ..||+|.|++.-..++ .+-+.+..++..+
T Consensus 204 ~rvf~i~~~FR~E~~~t----~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~ 254 (438)
T 3nem_A 204 DRVYEIAPIFRAEEHNT----TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHA 254 (438)
T ss_dssp CEEEEEEEEECCCSSCC----TTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHH
T ss_pred CceEEEcceEECCCCCC----cccccceeeeeeeeccCccHHHHHHHHHHHHHHH
Confidence 48999999999998763 34 4699999999877662 2444544444433
No 84
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=51.43 E-value=20 Score=29.80 Aligned_cols=45 Identities=4% Similarity=0.047 Sum_probs=35.3
Q ss_pred CCCHHHHHhhhcccccc---------------ceEEEEEcCEEee----ccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLAA---------------NALISMVNGVLWD----MTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~~---------------~iV~AkVNg~l~D----L~~pl~~d~~lefl~ 144 (635)
++|+.++...+...++. +.+..-|||+.++ ++++|..+.+|.|+.
T Consensus 25 ~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~~~~L~~gDeV~i~P 88 (93)
T 3dwg_C 25 GDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGLATAIADGDSVTILP 88 (93)
T ss_dssp CSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGGGCBCCTTCEEEEEE
T ss_pred CCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCCCcCCCCCCEEEEEC
Confidence 78999998887654321 1477889999998 799999988898875
No 85
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=45.50 E-value=31 Score=29.28 Aligned_cols=46 Identities=9% Similarity=0.159 Sum_probs=35.1
Q ss_pred CCCHHHHHhhhccccc---cc---------eE-------EEEEcCEEe----eccccccCCCCeEEeeC
Q 006680 100 ETSPMDIAQGISKSLA---AN---------AL-------ISMVNGVLW----DMTRPLEADCDLKLFTF 145 (635)
Q Consensus 100 ~tTp~diak~is~~~~---~~---------iV-------~AkVNg~l~----DL~~pl~~d~~lefl~f 145 (635)
++|+.|+...+...++ .. -+ +..|||+.+ +++++|..+.+|.++..
T Consensus 27 ~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i~pp 95 (99)
T 2l52_A 27 GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLEGLETLLKDSDEIGILPP 95 (99)
T ss_dssp CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTTSTTSCCCTTEEEEEECC
T ss_pred CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccCCCCCCCCCCCEEEEECC
Confidence 6899999888764431 11 24 778999998 78999999889998764
No 86
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=42.91 E-value=21 Score=39.93 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=33.2
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEE-EecC-chhHHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHI-FCRE-SQIKDEVRGVLEF 368 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~i-f~~~-~~~~~E~~~~l~~ 368 (635)
=++|++|++||+|.+..- --.-||+|.|++. |+.. +.+-+.+..++..
T Consensus 311 ~rVfeI~~~FR~E~~~t~---RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~ 360 (548)
T 3i7f_A 311 RKVFEVGPVFRAENSNTR---RHLTEFEGLDIEMEIVENYHECIDVMEKLFTF 360 (548)
T ss_dssp CEEEEEEEECCCSCCCSS---SCCSCEEEEEEEEECSSCTHHHHHHHHHHHHH
T ss_pred CcEEEEeeeEecCCCCCC---CcchhhhchhhhhhhhcCHHHHHHHHHHHHHH
Confidence 589999999999987420 2367999999995 7743 4444454444443
No 87
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=41.18 E-value=23 Score=28.23 Aligned_cols=45 Identities=11% Similarity=0.139 Sum_probs=35.4
Q ss_pred CCCHHHHHhhhccccc--c--ceEEEEEcCEE-eeccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLA--A--NALISMVNGVL-WDMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~--~--~iV~AkVNg~l-~DL~~pl~~d~~lefl~ 144 (635)
++|+.++...+..... . ..++.-|||+. .+.+++|..+.+|.++.
T Consensus 20 ~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 20 ANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNLNTPLKDGDVISLLP 69 (74)
T ss_dssp CSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCTTCCCCTTCEEEEEC
T ss_pred CCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCCCcCCCCCCEEEEEC
Confidence 7899999988875321 1 44677799998 78999999988999875
No 88
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=40.63 E-value=22 Score=38.73 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=31.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLE 367 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l~ 367 (635)
=++|++|++||+|.+..- --.-||+|.|++.-..+ +.+-+.+..++.
T Consensus 222 ~rVyeig~~FR~E~~~t~---rH~pEFtmlE~e~af~d~~d~m~~~E~li~ 269 (456)
T 3m4p_A 222 GKSFCMLSSYRAEQSRTV---RHLAEYLHLEAELPFISFEDLLNHLEDLVC 269 (456)
T ss_dssp SSEEEEEEEECCCSCCCS---SCCSEEEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred CcEEEEEhheecCCCCCC---cchHHHHHhHHHHhcCCHHHHHHHHHHHHH
Confidence 479999999999986420 23569999999976654 224444444443
No 89
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=39.83 E-value=82 Score=29.52 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
..=-||+-|+++.-+++....-+-+|| ++=-.|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 51 ~~~iHTlEHL~A~~lRnh~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 109 (160)
T 1j6x_A 51 MPSLHSLEHLVAEIIRNHANYVVDWSP-MGCQTGFYLTVL--N-HDNYTEILEVLEKTMQDVL 109 (160)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEEEEE-CTTSSEEEEEEE--S-CCCHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHhhCCCCeEEECC-cCcchhcEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 345799999999999998765556665 331258987774 2 345555 566788888775
No 90
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*
Probab=39.01 E-value=64 Score=33.82 Aligned_cols=58 Identities=19% Similarity=0.141 Sum_probs=40.7
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHh-CCe
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~-G~~ 379 (635)
...|++++++|.+||.+.... ....||+|.+.-+.+..-. -.+ +...+..+++.+ |.+
T Consensus 190 ~~~piriFEiGrVFR~d~~d~----tH~pEF~qlegl~~g~~v~-f~d---LKg~le~ll~~lfG~~ 248 (350)
T 1b7y_A 190 HTPPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIA-MAH---LKGAIYELAQALFGPD 248 (350)
T ss_dssp CCSSEEEEEEEEEECCCCCCS----SCCSEEEEEEEEEEETTCC-HHH---HHHHHHHHHHHHSCSS
T ss_pred cCCCeeEEEeeeEEECCCCCC----CCCChhHEEEEEEECCCCC-HHH---HHHHHHHHHHhhcCCC
Confidence 467899999999999765332 3568999999999886422 122 455566666665 864
No 91
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=36.62 E-value=60 Score=33.02 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHCCCEEEEeC
Q 006680 483 VERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDT 538 (635)
Q Consensus 483 veR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~------------~~~~~a~~v~~~L~~~G~~v~~d~ 538 (635)
.+-|+.+.++ +.|.||.++|-.. ...+.-..+.+.|+++|++|.+-.
T Consensus 104 t~emi~ial~---------~kP~~vtLVPEkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFI 162 (278)
T 3gk0_A 104 TPEMLDIACE---------IRPHDACLVPEKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFI 162 (278)
T ss_dssp SHHHHHHHHH---------HCCSEEEECCCSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHH---------cCCCEEEECCCCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEe
Confidence 3667787777 3588999999652 357778888899999999988765
No 92
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=34.22 E-value=1.1e+02 Score=28.85 Aligned_cols=58 Identities=14% Similarity=0.268 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
..=-||+-|+++.-+++....-+-+|| ++=-.|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 53 ~~~iHTlEHL~A~~lRnh~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 111 (166)
T 1vje_A 53 PAAIHTLEHLLAGYMRDHLEGVVDVSP-MGARTGMYMAVI--G-EPDEQGVMKAFEAALKDTA 111 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEE-CTTSSEEEEEEE--S-SCCHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHhcCCCCeEEECC-cccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 345799999999999998764456665 331259987764 2 355555 566788888776
No 93
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=33.91 E-value=66 Score=32.15 Aligned_cols=47 Identities=21% Similarity=0.257 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhCCCCCCCCCCceEEEEecCC------------CcHHHHHHHHHHHHHCCCEEEEeCC
Q 006680 484 ERMFAILLEHYKGKWPFWLSPRQAIVCPVSE------------KSQPYALQVRDHIYRAGYYVDVDTT 539 (635)
Q Consensus 484 eR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~------------~~~~~a~~v~~~L~~~G~~v~~d~~ 539 (635)
+-|+.+.++. .|.||.++|-.. ...+.-..+.+.|+++|++|.+-..
T Consensus 77 ~emi~ia~~~---------kP~~vtLVPE~r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFID 135 (243)
T 1m5w_A 77 EEMLAIAVET---------KPHFCCLVPEKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFID 135 (243)
T ss_dssp HHHHHHHHHH---------CCSEEEECCCCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred HHHHHHHHHc---------CCCEEEECCCCCCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4677777773 588999999642 3577788899999999999997653
No 94
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=30.10 E-value=22 Score=37.81 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=43.1
Q ss_pred EEEeeccCCCHHHHHhhhccccccceEEE--EEcCEEeeccccccCCCCeEEeeC
Q 006680 93 VKEGKRWETSPMDIAQGISKSLAANALIS--MVNGVLWDMTRPLEADCDLKLFTF 145 (635)
Q Consensus 93 ~~~~~~~~tTp~diak~is~~~~~~iV~A--kVNg~l~DL~~pl~~d~~lefl~f 145 (635)
....+. |+|+.|+|..|.....+..+.| .+|+....++++|+....|++++-
T Consensus 342 ~~~l~~-G~t~~d~a~~iH~d~~~~f~~a~~~~~~~~~g~~~~l~dgDvv~i~~~ 395 (397)
T 1wxq_A 342 VFLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVSV 395 (397)
T ss_dssp CEEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEEC
T ss_pred eEEeCC-CCCHHHHHHHHhHHHHhhhhhhHHhcCCEEcCCCccccCCCEEEEEeC
Confidence 344445 9999999999988888888888 679998999999997767888863
No 95
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*
Probab=28.81 E-value=76 Score=32.19 Aligned_cols=57 Identities=14% Similarity=0.260 Sum_probs=37.6
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHh-CCe
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIF-GFT 379 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~-G~~ 379 (635)
..|++++++|.+||.+.... ....||+|.++-+.+..-. -.+ +...+..+++.+ |.+
T Consensus 130 ~~~~riFEiG~Vfr~d~~d~----~h~~Ef~~Le~~~~g~~~d-f~d---lKg~le~ll~~l~g~~ 187 (294)
T 2rhq_A 130 QGPVKIICPGKVYRRDSDDA----THSHQFTQIEGLVVDKNIK-MSD---LKGTLELVAKKLFGAD 187 (294)
T ss_dssp CSCEEEEEEEEEECCCCCBT----TBCSEEEEEEEEEEESSCC-HHH---HHHHHHHHHHHHHCTT
T ss_pred CCCccEEEEcCEEecCCCCC----CCCChhhEEEEEEECCCCC-HHH---HHHHHHHHHHHHhCCC
Confidence 56899999999999754222 2346999998888885322 122 445555566655 763
No 96
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*
Probab=28.55 E-value=49 Score=33.37 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCceEEEEecCCC----------cHHHHHHHHHHHHHCCCEEEEeCC
Q 006680 483 VERMFAILLEHYKGKWPFWLSPRQAIVCPVSEK----------SQPYALQVRDHIYRAGYYVDVDTT 539 (635)
Q Consensus 483 veR~~~~l~e~~~g~~p~~lsp~qv~v~p~~~~----------~~~~a~~v~~~L~~~G~~v~~d~~ 539 (635)
-+-|+.+.++. .|.||.++|-..+ ..+.-..+.+.|+++|++|.+-..
T Consensus 75 t~emi~ial~~---------kP~~vtLVPEkreE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFID 132 (260)
T 3o6c_A 75 NDEILNLALKL---------KPHRVTLVPEKREELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFIN 132 (260)
T ss_dssp CHHHHHHHHHH---------CCSEEEECCCSGGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEEC
T ss_pred CHHHHHHHHHc---------CCCEEEECCCCCCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 36677887773 5889999996532 345567788899999999987653
No 97
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}
Probab=27.91 E-value=83 Score=32.72 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=38.7
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhC--CeEEEEEc
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFG--FTYELKLS 385 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G--~~~~l~ls 385 (635)
+..|++++++|.+||.+. . -..+..|+|.+.-+.+.. ---.+++++++-+...+ || ++++++-+
T Consensus 181 ~~~pirifeiGrVyR~d~-d----~th~p~fhqlegl~v~~~-v~f~dLKg~Le~~l~~l--fg~~~~vr~rps 246 (327)
T 3pco_A 181 QQPPIRIIAPGRVYRNDY-D----QTHTPMFHQMEGLIVDTN-ISFTNLKGTLHDFLRNF--FEEDLQIRFRPS 246 (327)
T ss_dssp CCSSCCBCCEECCBCSCC-B----TTBCSBCCEEEEEEEETT-CCHHHHHHHHHHHHHHH--HCSCSEEEEEEE
T ss_pred CCCCeeEEeeccEEecCC-C----cccCCcccEEEEEEECCC-CCHHHHHHHHHHHHHHH--hCCCceEEEecC
Confidence 467899999999999872 2 246677999865554422 22345555555444433 45 45554433
No 98
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=27.46 E-value=2.4e+02 Score=24.16 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=58.9
Q ss_pred ceEEEEecCC---CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhH
Q 006680 505 RQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSV 581 (635)
Q Consensus 505 ~qv~v~p~~~---~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 581 (635)
..+.|+|++. ...+|..++.+.|++.|+...+... +|-||- -|+|+.+-+. -..
T Consensus 8 ve~sv~Plg~~~~svs~~Va~~i~~i~~sGl~y~~~pm---------------~T~IEG---e~devm~vv~-----~~~ 64 (104)
T 1lxj_A 8 ADVCMVPIGTDSASISDFVALIEKKIRESPLKSTLHSA---------------GTTIEG---PWDDVMGLIG-----EIH 64 (104)
T ss_dssp EEEEEEEESCSCSCCHHHHHHHHHHHHTSSSEEEEETT---------------EEEEEE---EHHHHHHHHH-----HHH
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHHcCCCeEeCCC---------------ccEEEc---CHHHHHHHHH-----HHH
Confidence 3678899973 6789999999999999998876543 566663 4999877532 123
Q ss_pred HHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 582 REAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 582 r~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
..+...|++=+..+ +.+-+|.. ...++++-++.+.+++
T Consensus 65 e~~~~~G~~RV~~~---------iKid~R~d---~~~~~~~Kv~~v~~~l 102 (104)
T 1lxj_A 65 EYGHEKGYVRVHTD---------IRVGTRTD---KHQTAQDKIDVVLKKI 102 (104)
T ss_dssp HHHHHTTCCEEEEE---------EEEECCSS---CCCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEE---------EEEEecCC---CCCCHHHHHHHHHHHh
Confidence 33334455433322 33333322 2567888888877776
No 99
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=26.88 E-value=1.6e+02 Score=27.45 Aligned_cols=58 Identities=16% Similarity=0.244 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhC-C---c-eEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYG-C---K-LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg-~---~-L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
..=-||+-|+++.-+++... . + +-+|| ++=-.|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 50 ~~~iHTlEHL~A~~lRnh~~~~~~~~iId~sP-MGCrTGFYl~l~--G-~~~~~~v~~~~~~~l~~il 113 (157)
T 1j98_A 50 PDTIHTLEHLLAFTIRSHAEKYDHFDIIDISP-MGCQTGYYLVVS--G-ETTSAEIVDLLEDTMKEAV 113 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSEEEEEEEE-CTTSSEEEEEEE--E-CCCHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHhcCccccCCCCEEEeCC-cCcccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 34579999999999999883 2 3 34454 441259987664 2 355555 556787788775
No 100
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=24.68 E-value=52 Score=30.87 Aligned_cols=44 Identities=16% Similarity=0.323 Sum_probs=32.7
Q ss_pred CCHHHHHhhhccccc------------cceEEEEEcCEEeec----cccccCCCCeEEee
Q 006680 101 TSPMDIAQGISKSLA------------ANALISMVNGVLWDM----TRPLEADCDLKLFT 144 (635)
Q Consensus 101 tTp~diak~is~~~~------------~~iV~AkVNg~l~DL----~~pl~~d~~lefl~ 144 (635)
+|+.++...+...++ ...++.-|||+.++. +++|..+.+|.++.
T Consensus 23 ~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 23 ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (168)
T ss_dssp SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCCCccCCCCCCEEEEEC
Confidence 689998888765421 234678899999987 88888877777765
No 101
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=23.36 E-value=1.9e+02 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCC----ceEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYGC----KLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~----~L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
..=-||+-|+++.-+++.... -+-+|| ++=-.|||.-+. + ..+.++ ++.+++.|+.|.
T Consensus 50 ~~~iHTlEHL~A~~lRnh~~~~~~~iId~sP-MGCrTGFYlil~--G-~~~~~~v~~~~~~~l~~Il 112 (175)
T 1j6w_A 50 PKGIHTLEHLFAGFMRDHLNGDSIEIIDISP-MGCRTGFYMSLI--G-TPNEQKVSEAWLASMQDVL 112 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBEEEEEEE-CTTSSEEEEEEE--S-CCCHHHHHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHhhCccCCCCeEEEeCC-cCcccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 345799999999999998832 234454 431259987764 2 355555 556777777775
No 102
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=21.90 E-value=1.1e+02 Score=25.63 Aligned_cols=45 Identities=16% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCCHHHHHhhhccccc---c------------ceEEEEEcCEEee----ccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLA---A------------NALISMVNGVLWD----MTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~---~------------~iV~AkVNg~l~D----L~~pl~~d~~lefl~ 144 (635)
++|..++...+...+. . +-+...||++.|+ ++++|....+|.|+-
T Consensus 31 ~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 31 PVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS 94 (99)
T ss_dssp CCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred CCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence 6899998887764331 1 1246789999885 789999988888864
No 103
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Probab=20.42 E-value=1.1e+02 Score=34.28 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=39.4
Q ss_pred cccceEEeeeccccccccC-CCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCC
Q 006680 314 AELPLRLADFGVLHRNEAS-GALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF 378 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~-g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~ 378 (635)
+..|++++++|.+||.+.. .. ...+||+|.++-+.|..-. -.+ +...+..+++.||+
T Consensus 214 ~~~pvrlFEiGrVFr~D~~~d~----th~~ef~qLaglv~G~~vd-F~D---LKG~Le~ll~~LGi 271 (549)
T 2du7_A 214 RKLPLKLFSIDRCFRREQREDR----SHLMSYHSASCVVVGEDVS-VDD---GKVVAEGLLAQFGF 271 (549)
T ss_dssp SCSSEEEEEEEEECCCCSSCSS----SCCSCEEEEEEEEECTTCC-HHH---HHHHHHHHHGGGTC
T ss_pred CCCCeEEEEEeeEEecCCcccC----cCCCcceEEEEEEECCCCC-HHH---HHHHHHHHHHHcCC
Confidence 3678999999999997542 22 3568999999988886321 223 45555666666676
Done!