Query 006680
Match_columns 635
No_of_seqs 411 out of 2943
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 06:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006680.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006680hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tkea2 d.67.1.1 (A:63-224) Th 100.0 1.4E-40 1E-44 316.1 16.6 155 146-303 1-161 (162)
2 d1nyra3 d.67.1.1 (A:63-241) Th 100.0 1.1E-39 7.7E-44 315.4 15.7 166 144-312 1-169 (179)
3 d1qf6a4 d.104.1.1 (A:242-532) 100.0 5.1E-38 3.7E-42 324.9 10.8 185 311-496 105-290 (291)
4 d1nyra4 d.104.1.1 (A:242-532) 100.0 2.5E-37 1.8E-41 319.6 11.8 179 312-491 108-291 (291)
5 d1nyra1 c.51.1.1 (A:533-645) T 99.9 1.5E-26 1.1E-30 206.5 9.2 110 492-635 1-111 (113)
6 d1qf6a1 c.51.1.1 (A:533-642) T 99.9 9.5E-25 6.9E-29 193.8 10.3 103 498-634 1-103 (110)
7 d1b76a2 d.104.1.1 (A:1-394) Gl 99.9 4.1E-24 3E-28 223.8 5.9 173 309-495 138-314 (331)
8 d1nj1a1 c.51.1.1 (A:284-410) P 99.8 6.7E-22 4.9E-26 179.6 6.6 104 496-633 2-111 (127)
9 d1nj8a1 c.51.1.1 (A:268-393) P 99.8 3.3E-21 2.4E-25 174.7 6.9 104 495-633 1-110 (126)
10 d1v4pa_ d.67.1.2 (A:) Hypothet 99.8 1.1E-19 8.2E-24 169.4 15.1 137 153-299 6-147 (151)
11 d1hc7a1 c.51.1.1 (A:277-403) P 99.8 4.1E-20 3E-24 167.8 7.5 104 495-633 1-111 (127)
12 d1g5ha1 c.51.1.1 (A:343-469) T 99.8 4.4E-20 3.2E-24 167.5 6.2 104 497-634 5-114 (127)
13 d1atia1 c.51.1.1 (A:395-505) G 99.7 7.9E-19 5.7E-23 155.7 7.7 96 502-631 2-109 (111)
14 d1kmma1 c.51.1.1 (A:326-424) H 99.7 2.8E-18 2E-22 148.7 8.2 94 504-631 3-98 (99)
15 d1wu7a1 c.51.1.1 (A:330-426) H 99.7 3.7E-18 2.7E-22 147.5 7.9 92 505-630 4-95 (97)
16 d1qe0a1 c.51.1.1 (A:326-420) H 99.7 2.5E-18 1.8E-22 147.8 5.3 93 503-629 3-95 (95)
17 d1nj8a3 d.104.1.1 (A:0-267) Pr 99.7 1E-17 7.4E-22 169.8 5.1 148 311-495 116-266 (268)
18 d1h4vb1 c.51.1.1 (B:326-421) H 99.7 2.3E-17 1.7E-21 142.1 5.8 92 505-631 4-95 (96)
19 d1g5ha2 d.104.1.1 (A:41-330) T 99.6 1.8E-17 1.3E-21 170.0 0.7 154 309-494 131-288 (290)
20 d1nj1a3 d.104.1.1 (A:19-283) P 99.6 1.1E-15 8.1E-20 153.9 6.4 147 311-495 113-263 (265)
21 d1hc7a2 d.104.1.1 (A:5-276) Pr 99.5 1.5E-15 1.1E-19 152.2 5.3 146 312-495 122-270 (272)
22 d1tkea1 d.15.10.1 (A:1-62) Thr 99.4 2.3E-14 1.7E-18 113.9 5.2 61 83-144 1-61 (62)
23 d1nyra2 d.15.10.1 (A:4-62) Thr 99.4 3.6E-14 2.6E-18 111.7 2.3 59 84-143 1-59 (59)
24 d2e1ba2 d.67.1.2 (A:88-216) Al 99.4 1.4E-12 1E-16 117.8 12.7 110 155-299 11-125 (129)
25 d1seta2 d.104.1.1 (A:111-421) 99.3 1.1E-12 8.1E-17 135.1 5.9 158 312-504 130-300 (311)
26 d1qe0a2 d.104.1.1 (A:1-325) Hi 98.6 8.3E-08 6.1E-12 97.7 12.9 67 314-387 98-166 (325)
27 d1h4vb2 d.104.1.1 (B:2-325) Hi 98.6 5.6E-08 4.1E-12 99.1 11.5 66 315-387 98-165 (324)
28 d1atia2 d.104.1.1 (A:1-394) Gl 98.5 5.1E-08 3.7E-12 102.0 6.4 183 292-494 187-375 (394)
29 d1kmma2 d.104.1.1 (A:4-325) Hi 98.5 3.5E-07 2.6E-11 92.8 12.5 59 314-379 96-155 (322)
30 d1usya_ d.104.1.1 (A:) ATP pho 98.3 4.7E-07 3.4E-11 90.5 9.4 65 314-388 67-133 (275)
31 d1z7ma1 d.104.1.1 (A:6-323) AT 98.2 4.6E-07 3.3E-11 91.8 6.3 69 313-388 92-162 (318)
32 d1wu7a2 d.104.1.1 (A:3-329) Hi 97.9 5.7E-06 4.1E-10 84.0 6.7 67 315-388 95-164 (327)
33 d1v95a_ c.51.1.1 (A:) Nuclear 97.3 0.00024 1.7E-08 62.0 8.0 95 503-631 7-105 (130)
34 d1wxqa2 d.15.10.2 (A:320-395) 92.9 0.043 3.1E-06 43.7 4.2 50 94-144 24-75 (76)
35 d1zud21 d.15.3.2 (2:2-66) Thia 91.5 0.15 1.1E-05 38.9 5.8 56 86-145 2-61 (65)
36 d1tygb_ d.15.3.2 (B:) Thiamin 83.5 0.98 7.1E-05 34.1 5.8 57 86-145 2-62 (65)
37 d2cu3a1 d.15.3.2 (A:1-63) Unch 82.6 1.6 0.00012 32.7 6.7 55 86-145 2-60 (63)
38 d1c0aa3 d.104.1.1 (A:107-287,A 65.4 2.9 0.00021 41.3 5.2 40 318-361 101-141 (346)
39 d1e1oa2 d.104.1.1 (A:161-502) 64.0 3.4 0.00024 40.5 5.4 40 318-361 92-132 (342)
40 d1vjka_ d.15.3.1 (A:) Molybdop 59.2 4.5 0.00032 31.5 4.3 45 100-144 28-85 (88)
41 d1l0wa3 d.104.1.1 (A:105-294,A 54.1 6.2 0.00045 38.9 5.4 34 318-355 109-142 (356)
42 d1ryja_ d.15.3.2 (A:) Hypothet 53.5 23 0.0017 26.3 7.1 59 84-144 7-65 (70)
43 d1rwsa_ d.15.3.2 (A:) Hypothet 50.2 4.5 0.00033 30.7 2.6 48 94-144 16-63 (68)
44 d1j6xa_ d.185.1.2 (A:) Autoind 49.9 22 0.0016 30.9 7.6 59 152-213 51-109 (151)
45 d1jjca_ d.104.1.1 (A:) Phenyl- 48.9 8.7 0.00063 36.7 5.2 55 316-378 108-162 (266)
46 d1vjea_ d.185.1.2 (A:) Autoind 40.9 36 0.0026 29.4 7.5 58 152-213 46-104 (149)
47 d1nnha_ d.104.1.1 (A:) Hypothe 36.2 20 0.0014 34.2 5.6 59 319-378 89-149 (293)
48 d1fm0d_ d.15.3.1 (D:) Molybdop 33.9 39 0.0029 25.5 6.1 45 100-144 25-76 (81)
49 d1eova2 d.104.1.1 (A:205-557) 30.8 23 0.0017 34.2 5.2 33 319-355 112-145 (353)
50 d3c8ya2 d.15.4.2 (A:1-126) Fe- 29.6 20 0.0014 30.2 3.8 28 83-112 1-28 (126)
51 d1b8aa2 d.104.1.1 (A:104-438) 28.8 36 0.0026 32.4 6.3 32 318-353 101-133 (335)
52 d2bona1 e.52.1.2 (A:5-299) Lip 27.5 22 0.0016 33.1 4.2 63 504-598 1-63 (295)
53 d2fug33 d.15.4.2 (3:1-95) Nadh 24.6 29 0.0021 26.9 3.8 28 83-112 1-28 (95)
54 d1v8ca1 d.15.3.1 (A:1-87) MoaD 24.3 34 0.0025 26.1 4.1 45 100-144 22-82 (87)
55 d1j98a_ d.185.1.2 (A:) Autoind 21.8 1.1E+02 0.0079 26.3 7.3 57 153-213 48-110 (154)
56 d1j6wa_ d.185.1.2 (A:) Autoind 20.1 1.2E+02 0.0089 26.2 7.3 58 152-213 48-110 (161)
57 d1qada_ d.93.1.1 (A:) Phosphat 20.0 66 0.0048 25.2 5.2 77 219-317 13-89 (107)
No 1
>d1tkea2 d.67.1.1 (A:63-224) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=1.4e-40 Score=316.10 Aligned_cols=155 Identities=35% Similarity=0.693 Sum_probs=145.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEe
Q 006680 146 DSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEV 222 (635)
Q Consensus 146 ~s~eG~~vy~hS~ahlL~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~v 222 (635)
.|+||.++||||++|||++|++++| ++++.+||+++ +||||||.. +.+++++|+.+||++|+++| ++||++..+
T Consensus 1 kd~egl~v~rhS~ahlLa~Av~~l~p~~kl~~g~~~~--~GfyyD~~~-~~~~~~edl~~ie~~m~~ii~~~~~~~~~~~ 77 (162)
T d1tkea2 1 KDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVID--NGFYYDVDL-DRTLTQEDVEALEKRMHELAEKNYDVIKKKV 77 (162)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCCEET--TEEEEEEEC-SSCCCHHHHHHHHHHHHHHHTTCCBCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEeccccC--CeEEEEeec-cCCCCHHHHHHHHHHHHHHHHhcCCceEEEe
Confidence 4789999999999999999999999 89999999999 999999986 67899999999999999999 999999999
Q ss_pred CHHHHHHHhhcCcc--hhhhccc-CCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 223 TRDQALEMFSDNNF--KVEIIND-LPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 223 sreeAle~F~~~~~--K~~LL~~-~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
++++|+++|..+++ |..++.. .+.+..+++|+||+|+|+|+||||||||.|++|+|++.+++||+|+++|++|||||
T Consensus 78 s~~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~y~~g~~~dlc~Gphv~sTg~ik~FkL~~vsgaYw~gd~~n~~LqRiy 157 (162)
T d1tkea2 78 SWHEARETFANRGESYKVSILDENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRIY 157 (162)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSCTTCCCEEEEETTEEEEESCCCCSBGGGCCCEEEEEEEEEEGGGCTTSCEEEEEE
T ss_pred chHHHHHHHHHhhcchhhheeeccccccccceeeccCceEeecCCCccccCcccceEEEEEechhhcCCCCCCcccEEEE
Confidence 99999999998765 6667765 33567899999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 006680 300 GISY 303 (635)
Q Consensus 300 G~~f 303 (635)
|++|
T Consensus 158 g~af 161 (162)
T d1tkea2 158 GTAW 161 (162)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 9998
No 2
>d1nyra3 d.67.1.1 (A:63-241) Threonyl-tRNA synthetase (ThrRS), second 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=1.1e-39 Score=315.35 Aligned_cols=166 Identities=39% Similarity=0.757 Sum_probs=158.3
Q ss_pred eCCChhHHHHHHHHHHHHHHHHHHHHh-CCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEE
Q 006680 144 TFDSDEGRDTFWHSSAHILGQAIEQQY-GCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERI 220 (635)
Q Consensus 144 ~f~s~eG~~vy~hS~ahlL~~Av~~lf-g~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~ 220 (635)
|++|++|.++||||++|||++|++++| +..+..||.++ +||||||.. +.++|++|+.+||+.|+++| ++||++.
T Consensus 1 T~~~~~~l~i~~HSathlL~~Al~~~~~~~~~~~G~~~~--~gf~~Df~~-~~~lt~edl~~IE~~m~~iI~~~~~i~~~ 77 (179)
T d1nyra3 1 TPGSEEALEVLRHSTAHLMAHAIKRLYGNVKFGVGPVIE--GGFYYDFDI-DQNISSDDFEQIEKTMKQIVNENMKIERK 77 (179)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHSSSCEECCCCEET--TEEEEEEEC-SSCCCSTTHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcCHHHHHHHhHhHHHHHHHHHHHHCCCcEEEEeeeec--cceEEEEee-cccCCHHHHHHHHHHHHHHHHhhcceEEE
Confidence 689999999999999999999999999 57788899998 999999987 67899999999999999999 9999999
Q ss_pred EeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCcceeec
Q 006680 221 EVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVYG 300 (635)
Q Consensus 221 ~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIyG 300 (635)
++++++|+++|++++||..++...+.++.+++|++|+|+|+|+||||||||.|++|+|++.++.||.|...++.+|||||
T Consensus 78 ~~~~~eA~~~f~~~~~k~~~i~~~~~~~~v~vy~~g~~~dlC~G~Hv~~T~~I~~fki~~~sgay~~g~~~~~~L~ri~G 157 (179)
T d1nyra3 78 VVSRDEAKELFSNDEYKLELIDAIPEDENVTLYSQGDFTDLCRGVHVPSTAKIKEFKLLSTAGAYWRGDSNNKMLQRIYG 157 (179)
T ss_dssp ECTTTHHHHHCSSCHHHHHHHCCCSSSCCCEEEEETTEEEECCSCCCSCGGGCCEEEEEEEEEEETTSCSSSCEEEEEEE
T ss_pred EcCHHHHHHHhccCccceehhhhcCCCCcEEEEeeCCEEEecCCCCCccccccCceEEEEeecccccCccchhheeeeHh
Confidence 99999999999999999999998866778999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhhhhc
Q 006680 301 ISYPDKKRLKHA 312 (635)
Q Consensus 301 ~~fp~~~~L~es 312 (635)
++||+++.|.+-
T Consensus 158 ~a~~~~~~L~~~ 169 (179)
T d1nyra3 158 TAFFDKKELKAH 169 (179)
T ss_dssp EEESSHHHHHHH
T ss_pred hccCCHHHHHHH
Confidence 999999998763
No 3
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.1e-38 Score=324.86 Aligned_cols=185 Identities=54% Similarity=0.948 Sum_probs=180.1
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~ 389 (635)
.||++||+++++++.+||+|.++++.||+|+|||+|+|+|+||+++|+.+|+..+++++.++|+.||++ +.+++|+||+
T Consensus 105 ~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~~~~~~i~~~lGl~~~~v~~s~~~~ 184 (291)
T d1qf6a4 105 KSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPE 184 (291)
T ss_dssp EEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEEEEECCCS
T ss_pred cchhhcCeeEeecceeeecccccccccccccccceeccceeEecchhhHHHHHHHHHHHHHHHHHcCCceEEEEEecCCc
Confidence 499999999999999999999999999999999999999999999999999999999999999999997 8899999999
Q ss_pred CcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCCCcc
Q 006680 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDEAKT 469 (635)
Q Consensus 390 ~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e~~~ 469 (635)
++.|+.+.|++++..+.+++.+.|.++.+++++++|||||+++.+.|++|+.|||+|+||||++|.|||+.|.+++ |+.
T Consensus 185 ~~~~~~e~w~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~k~~~~~~~~~gr~~~~~tiqld~~~~~rf~~~y~~~d-g~~ 263 (291)
T d1qf6a4 185 KRIGSDEMWDRAEADLAVALEENNIPFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGED-NER 263 (291)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHTTTCCCEEETTCSCTTCCEEEEEEECTTCCEEEEEEEEEESSHHHHTTCCEECTT-SCE
T ss_pred ccCCCHHHHHHHHHHHHHHHHHcCCCceecccccccccccccccccccCCCeEEeceeEEeccchhhhCCEEECCC-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 888
Q ss_pred ccccccccceeeeHHHHHHHHHHHhCC
Q 006680 470 ERPVMIHRAILGSVERMFAILLEHYKG 496 (635)
Q Consensus 470 ~~p~~i~~ai~GgveR~~~~l~e~~~g 496 (635)
.+|+|||||++||+||++|+|+||++|
T Consensus 264 ~~pvmiHra~~GsieR~ia~LiE~~~g 290 (291)
T d1qf6a4 264 KVPVMIHRAILGSMERFIGILTEEFAG 290 (291)
T ss_dssp ECCEEEEEEEEEEHHHHHHHHHHHHTT
T ss_pred cCCEEEEcCCCCcHHHHHHHHHHhhCC
Confidence 999999999999999999999999988
No 4
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00 E-value=2.5e-37 Score=319.64 Aligned_cols=179 Identities=46% Similarity=0.830 Sum_probs=172.5
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccC---
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR--- 387 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r--- 387 (635)
+|++||+++++++.+||+|.++++.||+|+|||+|+|+|+||+++|+.+|+..+++++.++|+.||++ +.+.++++
T Consensus 108 sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~~~~~~~~i~~~lGl~~~~v~~~~~d~~ 187 (291)
T d1nyra4 108 SYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRDPE 187 (291)
T ss_dssp BGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCC
T ss_pred cccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCCcccHHHHHHHHHHHHHHhhhcCcCceEEEEecCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999998 77888887
Q ss_pred -CCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecCC
Q 006680 388 -PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAEDE 466 (635)
Q Consensus 388 -~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~e 466 (635)
++++.|+.+.|+.++.++.+++++.+.++...+++++|||||+|+.+.|++||.|||+|+|+||++|.||++.|.+++
T Consensus 188 ~~~~~~~d~e~w~~~~~~l~~~~~~~~~~~~~~~~~~~f~~~k~d~~~~d~~gr~~q~~Tiq~df~~~~rf~l~Y~~~d- 266 (291)
T d1nyra4 188 DKEKYFDDDDMWNKAENMLKEAADELGLSYEEAIGEAAFYGPKLDVQVKTAMGKEETLSTAQLDFLLPERFDLTYIGQD- 266 (291)
T ss_dssp CSSSSSCCHHHHHHHHHHHHHHHHHHCCCCCCEESCSBTTBCEEEEEECCTTSCCEEEEEEEEESSHHHHTTCCEECTT-
T ss_pred ChhheeechHHhhHHHHHHHHHHHhcCCcceeeecccceeccccceeecCCCCCeEEEEEEeehhcchhhcCCEEECCC-
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CccccccccccceeeeHHHHHHHHH
Q 006680 467 AKTERPVMIHRAILGSVERMFAILL 491 (635)
Q Consensus 467 ~~~~~p~~i~~ai~GgveR~~~~l~ 491 (635)
|+.++|||||||++||+||++|+|+
T Consensus 267 G~~~~PvmiHra~~Gs~ER~ia~l~ 291 (291)
T d1nyra4 267 GEHHRPVVIHRGVVSTMERFVAFLT 291 (291)
T ss_dssp SCEECCEEEEEEEEEEHHHHHHHHH
T ss_pred CCCcCCEEEeCCCccHHHHHHHhhC
Confidence 8889999999999999999999984
No 5
>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.93 E-value=1.5e-26 Score=206.49 Aligned_cols=110 Identities=29% Similarity=0.545 Sum_probs=105.5
Q ss_pred HHhCCCCCCCCCCceEEEEecCC-CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhc
Q 006680 492 EHYKGKWPFWLSPRQAIVCPVSE-KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVA 570 (635)
Q Consensus 492 e~~~g~~p~~lsp~qv~v~p~~~-~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~ 570 (635)
|||.|+||+|+||.||+|+|++. +..+||.+|++.|+++|++|++|+++.++++|
T Consensus 1 E~~~G~~P~~lAP~qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~~g~k------------------------ 56 (113)
T d1nyra1 1 EETKGAFPTWLAPKQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMGYK------------------------ 56 (113)
T ss_dssp HHHTTCCCTTTCSSCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHHHH------------------------
T ss_pred CCCCCCCCcccCCceEEEEEeCcHHHhhhHHHHHHHhhhhccceeecccccccchH------------------------
Confidence 79999999999999999999984 45789999999999999999999999999999
Q ss_pred ccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhcC
Q 006680 571 GINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAFQ 635 (635)
Q Consensus 571 ~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~~ 635 (635)
+++|++.|+||++|||++|+++|+|+||+|+++++..++++++++.|++.+.+|+
T Consensus 57 ----------~~~a~~~g~p~~iiiG~~E~~~~~v~vr~~~~~~q~~v~~~e~i~~l~~ei~~rk 111 (113)
T d1nyra1 57 ----------IREAQMQKIPYQIVVGDKEVENNQVNVRQYGSQDQETVEKDEFIWNLVDEIRLKK 111 (113)
T ss_dssp ----------HHHHHHHTCSEEEEECHHHHHTTEEEEEETTSSCCCEEEHHHHHHHHHHHHHTTC
T ss_pred ----------HHHHHHhCceEEEEEccccccCCEEEEEECCCCcEEEEeHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999988875
No 6
>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.91 E-value=9.5e-25 Score=193.78 Aligned_cols=103 Identities=27% Similarity=0.584 Sum_probs=101.0
Q ss_pred CCCCCCCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccc
Q 006680 498 WPFWLSPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPI 577 (635)
Q Consensus 498 ~p~~lsp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (635)
||+||||.||+|||++++..+||.+|++.||.+|++|++|+++.++++|
T Consensus 1 ~P~~laP~Qv~iipi~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~~k------------------------------- 49 (110)
T d1qf6a1 1 FPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAGIRVKADLRNEKIGFK------------------------------- 49 (110)
T ss_dssp CCTTTCSSCEEEEESSHHHHHHHHHHHHHHHTTTCCEEEECCSSCHHHH-------------------------------
T ss_pred CCCCcCCceEEEEeccHHHHHHHHHHHHHHHHhhccccccCCccchhHH-------------------------------
Confidence 9999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 578 RVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 578 ~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+++|++.|+||++|||++|+++|+|+||+|+++++..++++++++.|++.+.+|
T Consensus 50 ---i~~a~~~g~p~~iiiG~~E~~~~~V~ir~~~~~~q~~i~~~e~i~~l~~~i~~r 103 (110)
T d1qf6a1 50 ---IREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEVIEKLQQEIRSR 103 (110)
T ss_dssp ---HHHHHHTTCSEEEEECTTTGGGCCEEEEESSSCEEEEECHHHHHHHHHHHHHTT
T ss_pred ---HHHHHHcCCCEEEEECchHHhCCEEEEEECCCCceEEeeHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998876
No 7
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.88 E-value=4.1e-24 Score=223.83 Aligned_cols=173 Identities=21% Similarity=0.183 Sum_probs=144.8
Q ss_pred hhhcccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 006680 309 LKHAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (635)
Q Consensus 309 L~esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r 387 (635)
+..+|++||++++++|.+||+|.+++ .||+|+|||+|+|+|+||+++|+.+|+..++..+...|..+|+. +.++.+..
T Consensus 138 ~~~syk~LP~~~aqig~~fR~E~s~~-~gl~RvReFtq~D~~~F~~~~q~~~~~~~~~~~~~~~~~~~g~~~~~lr~~~~ 216 (331)
T d1b76a2 138 LDATSRKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERLKWWQEMGLSRENLVPYQQ 216 (331)
T ss_dssp HHHHTCCSSEEEEEEEEEECCCSSCC-TTTTSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred Hhccccccchhhhhccceeccccccc-ccccccchhhhhhhhhhcCCcchhHHHHHHHHHHHHHHHHhhccchheeeeee
Confidence 34599999999999999999999998 99999999999999999999999999999999999999999996 77777665
Q ss_pred CC--CcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecC
Q 006680 388 PE--KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (635)
Q Consensus 388 ~~--~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~ 465 (635)
+. ...+..++|+ .+.+.+|...+++|+||+|++|+.+.++.++.++|++.|+|+. +.++++.|++++
T Consensus 217 ~~~e~a~~~~~~~~----------~e~~~~~g~~e~eg~~y~~~~Dl~~~~~~~~~~~~~~~q~d~~-~s~~~l~~~d~e 285 (331)
T d1b76a2 217 PPESSAHYAKATVD----------ILYRFPHGSLELEGIAQRTDFDLGSHTKDQEALGITARVLRNE-HSTQRLAYRDPE 285 (331)
T ss_dssp CTTSSCTTEEEEEE----------EEEEETTEEEEEEEEEEECSHHHHHTCTTTTTTTCCSCCCCCS-SCSSCCCEECSS
T ss_pred ccchhhhhhHHHHH----------HHhcCCCccccchhhhccccccccccccccccccceeeeeccC-CcccceEEEecC
Confidence 42 3333334443 2345567778889999999999999999999999999999954 556889999876
Q ss_pred CCccccccccccceeeeHHHHH-HHHHHHhC
Q 006680 466 EAKTERPVMIHRAILGSVERMF-AILLEHYK 495 (635)
Q Consensus 466 e~~~~~p~~i~~ai~GgveR~~-~~l~e~~~ 495 (635)
.++..+|+|||+|. ||||++ |+|.|+|.
T Consensus 286 ~g~k~~P~vIe~S~--GieR~~~aiL~e~y~ 314 (331)
T d1b76a2 286 TGKWFVPYVIEPSA--GVDRGVLALLAEAFT 314 (331)
T ss_dssp SSCEECCEEEEEEE--EHHHHHHHHHHHHEE
T ss_pred CCeEEeceEEEcCC--ChhHHHHHHHHHHHh
Confidence 56777899999873 599955 77777774
No 8
>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=99.84 E-value=6.7e-22 Score=179.61 Aligned_cols=104 Identities=18% Similarity=0.362 Sum_probs=97.9
Q ss_pred C-CCCCCCCCceEEEEecC-----CCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhh
Q 006680 496 G-KWPFWLSPRQAIVCPVS-----EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELV 569 (635)
Q Consensus 496 g-~~p~~lsp~qv~v~p~~-----~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~ 569 (635)
| .||+|+||.||+|||++ ++..+||.+|++.|+++|++|++|+++.++|+|
T Consensus 2 Gl~~P~~iAP~qV~Iipi~~~~~~e~~~~~a~~l~~~L~~~gi~v~~D~r~~~~g~K----------------------- 58 (127)
T d1nj1a1 2 GLCLPPDVAAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRK----------------------- 58 (127)
T ss_dssp SEECCTTTSSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHH-----------------------
T ss_pred CccCCcccCCceEEEEEccCCCchHHHHHHHHHHHHHHHhcCCceEEEeccchHHHH-----------------------
Confidence 5 59999999999999995 346789999999999999999999999999999
Q ss_pred cccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHh
Q 006680 570 AGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 570 ~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~ 633 (635)
+++|++.|+||++|||++|+++|+|+||+|++|++..++++++++.+++++++
T Consensus 59 -----------~~~a~~~giP~~iiiG~ke~~~~~v~l~~r~~~~~~~v~~~~~~~~i~~ll~~ 111 (127)
T d1nj1a1 59 -----------YYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKD 111 (127)
T ss_dssp -----------HHHHHHEECSEEEEECHHHHTTTEEEEEESSSCCEEEEETTTHHHHHHHHHHH
T ss_pred -----------HHHHHhhcCchheeecccccccCEEEEEEcCCCcEEEeeHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877764
No 9
>d1nj8a1 c.51.1.1 (A:268-393) Prolyl-tRNA synthetase (ProRS) domain {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=99.82 E-value=3.3e-21 Score=174.71 Aligned_cols=104 Identities=16% Similarity=0.289 Sum_probs=95.8
Q ss_pred CC-CCCCCCCCceEEEEecCC-----CcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhh
Q 006680 495 KG-KWPFWLSPRQAIVCPVSE-----KSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEEL 568 (635)
Q Consensus 495 ~g-~~p~~lsp~qv~v~p~~~-----~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~ 568 (635)
+| .||+|+||.||+|||++. ...+||.++++.|+ +|++|.+|+++.++|+|
T Consensus 1 kGlv~P~~lAP~qv~Iipi~~~~~~~~~~~~a~~l~~~L~-~~i~v~~D~~~~~~g~k---------------------- 57 (126)
T d1nj8a1 1 KGLILPPIVAPIQVVIVPLIFKGKEDIVMEKAKEIYEKLK-GKFRVHIDDRDIRPGRK---------------------- 57 (126)
T ss_dssp TBCCCCTTSCSSSEEEEECCCSSCHHHHHHHHHHHHHHHH-TTSCEEECCSCSCHHHH----------------------
T ss_pred CCCCCchhhCCceEEEEeccCCCchHHHHHHHHHHHHHhc-cceeEEeecccchHHHH----------------------
Confidence 36 699999999999999963 24679999999995 69999999999999999
Q ss_pred hcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHh
Q 006680 569 VAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 569 ~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~ 633 (635)
+++|++.|+||++|||++|+++|+|+||+|+++++..++++++++.+.+.+++
T Consensus 58 ------------~~~a~~~giP~~iiiG~ke~~~~~v~lr~R~~~~~~~v~~~~l~~~i~~~l~~ 110 (126)
T d1nj8a1 58 ------------FNDWEIKGVPLRIEVGPKDIENKKITLFRRDTMEKFQVDETQLMEVVEKTLNN 110 (126)
T ss_dssp ------------HHHHHHTTCSEEEEECHHHHHTTEEEEEETTTCCEEEEETTSHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhcccchhhCCEEEEEEcCCCceEEEcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998877664
No 10
>d1v4pa_ d.67.1.2 (A:) Hypothetical protein PH0574 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.81 E-value=1.1e-19 Score=169.41 Aligned_cols=137 Identities=16% Similarity=0.237 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCc--eEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHH
Q 006680 153 TFWHSSAHILGQAIEQQYGCK--LCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQAL 228 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg~~--L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAl 228 (635)
+-.||++|||++|++++||.+ ...|..+. .+..++|+.+ +..+|++++..||+.||++| |+||+..+++++||.
T Consensus 6 mR~HTa~HlL~~a~~~~~g~~~~~~~~~~~~-~~~~~~d~~~-~~~~t~e~l~~iE~~~n~~I~~~~~v~~~~~~~~ea~ 83 (151)
T d1v4pa_ 6 VRTHSALHVVKGAVVKVLGSEAKWTYSTYVK-GNKGVLIVKF-DRKPSDEEIREIERLANEKVKENAPIKIYELPREEAE 83 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGCCEEEEEEE-TTEEEEEEEC-SSCCCHHHHHHHHHHHHHHHHHTCBCEEEEEEHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCcCceeeeeceec-CCccEEEEec-cccchhHHHHHHHHHHHHhhhcccccceEEeeccccc
Confidence 447999999999999999754 35565554 1445678876 56899999999999999999 999999999999999
Q ss_pred HHhhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 229 EMFSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 229 e~F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
++|....++...... ....++++.+|++ ++.|+||||+|||+|+.|+|++.+.. ......||+
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~iriv~i~~~d~~~CgGTHV~~T~eIg~~kI~~~~~~------~~kg~~Ri~ 147 (151)
T d1v4pa_ 84 KMFGEDMYDLFPVPE--DVRILKVVVIEDWNVNACNKEHTKTTGEIGPIKIRKVRFR------KSKGLLEIH 147 (151)
T ss_dssp HHHGGGGSCSSCCCT--TCCEEEEEEETTTEEEECCSCCCSBGGGTCCEEEEEEEEE------TTTTEEEEE
T ss_pred ccccccccccccCCc--cccceEEEeecCceeeCCCCCccCChhhceeEEEEEEEee------ccCCcEEEE
Confidence 999764443332222 3457999999998 78999999999999999999987532 234456664
No 11
>d1hc7a1 c.51.1.1 (A:277-403) Prolyl-tRNA synthetase (ProRS) domain {Thermus thermophilus [TaxId: 274]}
Probab=99.79 E-value=4.1e-20 Score=167.80 Aligned_cols=104 Identities=24% Similarity=0.381 Sum_probs=93.6
Q ss_pred CC-CCCCCCCCceEEEEecCC-----CcHHHHHHHHHHHHHCCCEEEEeCCC-CCcCCCCCcccccccceeeeeehhhhh
Q 006680 495 KG-KWPFWLSPRQAIVCPVSE-----KSQPYALQVRDHIYRAGYYVDVDTTD-RKIQKKPNSFVHARSTYIEVVFSCWEE 567 (635)
Q Consensus 495 ~g-~~p~~lsp~qv~v~p~~~-----~~~~~a~~v~~~L~~~G~~v~~d~~~-~~l~kk~~~~~~~~~~~~~~~~~~~~~ 567 (635)
+| .||+|+||+||.|+|++. +..+||.+|++.|+.+|++|.+|+++ .++|+|
T Consensus 1 kGl~~P~~lAP~qv~Iipi~~~~~~~~~~~~a~~i~~~L~~~girv~~Dd~~~~~~g~K--------------------- 59 (127)
T d1hc7a1 1 RGLVLPPRLAPIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYK--------------------- 59 (127)
T ss_dssp TBCCCCTTTCSCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHH---------------------
T ss_pred CCCCCchhhCCeeEEEEEecCChhhHHHHHHHHHHHHHHHHcCCeeEEecccchhHHHH---------------------
Confidence 36 599999999999999973 24589999999999999999999875 579999
Q ss_pred hhcccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHh
Q 006680 568 LVAGINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEA 633 (635)
Q Consensus 568 ~~~~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~ 633 (635)
+++|++.|+||++|||++|+++|+|+||.|+++ +.+++++++++.+++.+++
T Consensus 60 -------------~~~a~~~giP~~iiiG~~e~~~~~v~v~~R~~~-k~~i~~~~~~~~i~~~l~~ 111 (127)
T d1hc7a1 60 -------------FHEWELKGVPFRVELGPKDLEGGQAVLASRLGG-KETLPLAALPEALPGKLDA 111 (127)
T ss_dssp -------------HHHHHHTTCSEEEEECHHHHHTTEEEEEETTSC-CCEEEGGGHHHHHHHHHHH
T ss_pred -------------HHHHHhhcCCeeEEechhhhcCceEEEEeccCC-CceeeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999765 5679999999999888765
No 12
>d1g5ha1 c.51.1.1 (A:343-469) The aaRS-like accessory subunit of mitochondrial polymerase gamma, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.78 E-value=4.4e-20 Score=167.53 Aligned_cols=104 Identities=16% Similarity=0.160 Sum_probs=96.0
Q ss_pred CCCCCCCCceEEEEecCC---CcHHHHHHHHHHHHHCCCEEEE---eCCCCCcCCCCCcccccccceeeeeehhhhhhhc
Q 006680 497 KWPFWLSPRQAIVCPVSE---KSQPYALQVRDHIYRAGYYVDV---DTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVA 570 (635)
Q Consensus 497 ~~p~~lsp~qv~v~p~~~---~~~~~a~~v~~~L~~~G~~v~~---d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~ 570 (635)
+||+|+||+||.|+|++. +..++|.+|++.|+++|++|.. |+++.++|+|
T Consensus 5 ~lpp~lAP~qV~Ii~~~~~~~e~~~~a~~l~~~L~~~gi~v~~~~~D~~~~~lg~k------------------------ 60 (127)
T d1g5ha1 5 KLHPCLAPIKVALDVGKGPTVELRQVCQGLLNELLENGISVWPGYSETVHSSLEQL------------------------ 60 (127)
T ss_dssp CCCTTTCSCCEEEEECSSCHHHHHHHHHHHHHHHHHTTCCEEEGGGSCCCSCHHHH------------------------
T ss_pred EcCcccCCceEEEEecCCCCHHHHHHHHHHHHHHHHhcCceeeeeecCCCcCHHHH------------------------
Confidence 699999999999999965 3566799999999999999975 5567899999
Q ss_pred ccccccchhhHHHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHHHhc
Q 006680 571 GINIYPIRVSVREAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKLEAF 634 (635)
Q Consensus 571 ~~~~~~~~~~ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~~~~ 634 (635)
+++|++.|+||++|||++|.++|+|+||+|++|++..|+++++.+++++.+++.
T Consensus 61 ----------~~~a~~~giP~~iiiG~~e~~~~~V~ir~r~t~~q~~i~i~~l~~~l~~~l~~~ 114 (127)
T d1g5ha1 61 ----------HSKYDEMSVLFSVLVTETTLENGLIQLRSRDTTMKEMMHISKLRDFLVKYLASA 114 (127)
T ss_dssp ----------HHHHHHTTCSEEEEECHHHHHHCEEEEEETTTCCEEEEETTSHHHHHHHHHHHH
T ss_pred ----------HHHHHHhCCcEEEEEcCCccccCEEEEEECCCCceEEEEHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999988763
No 13
>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.74 E-value=7.9e-19 Score=155.70 Aligned_cols=96 Identities=21% Similarity=0.314 Sum_probs=91.2
Q ss_pred CCCceEEEEecC---CCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccch
Q 006680 502 LSPRQAIVCPVS---EKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIR 578 (635)
Q Consensus 502 lsp~qv~v~p~~---~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (635)
+||.||.|+|++ ++..+||.+|++.|+++|++|.+|+++.++|+|
T Consensus 2 lAP~qv~Iipi~~~~~~~~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K-------------------------------- 49 (111)
T d1atia1 2 LAPIKVAVIPLVKNRPEITEYAKRLKARLLALGLGRVLYEDTGNIGKA-------------------------------- 49 (111)
T ss_dssp GCSCSEEEEESCSSCHHHHHHHHHHHHHHHTTCSSCEEECCCSCHHHH--------------------------------
T ss_pred CCCcEEEEEEccCCCHHHHHHHHHHHhhhccccceeEeecCCCCHHHH--------------------------------
Confidence 799999999997 457899999999999999999999999999999
Q ss_pred hhHHHHhhcCCcEEEEEcccccccC---------eEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 579 VSVREAQLAQYNFILVVGEEEAKSG---------QVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 579 ~~ir~A~~~~~~~~lvvG~~E~~~~---------~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
+++|++.|+||++|||++|+++| +|+||+|+++++..++++|+++.+++++
T Consensus 50 --~~~~~~~gvP~~iiIG~kel~~g~~~~~~~~ntV~ir~Rd~~~~~~v~i~e~~~~l~~~l 109 (111)
T d1atia1 50 --YRRHDEVGTPFAVTVDYDTIGQSKDGTTRLKDTVTVRDRDTMEQIRLHVDELEGFLRERL 109 (111)
T ss_dssp --HHHHHHTTCSEEEEECHHHHTCCTTSCCTTTTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred --HHHHHHcCCCEEEEECcHHhhcccccccccCceEEEEEcCCCceEEEEHHHHHHHHHHHh
Confidence 99999999999999999999885 7999999999999999999999999876
No 14
>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=2.8e-18 Score=148.67 Aligned_cols=94 Identities=15% Similarity=0.253 Sum_probs=91.0
Q ss_pred CceEEEEecCCCcHHHHHHHHHHHHHC--CCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhH
Q 006680 504 PRQAIVCPVSEKSQPYALQVRDHIYRA--GYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSV 581 (635)
Q Consensus 504 p~qv~v~p~~~~~~~~a~~v~~~L~~~--G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 581 (635)
+.+|+|+|++++...+|.++++.||++ |++|++|+++.+++|| +
T Consensus 3 ~vdv~vi~~~~~~~~~a~~la~~LR~~~~gi~v~~~~~~~~l~kq----------------------------------~ 48 (99)
T d1kmma1 3 VVDIYLVASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQ----------------------------------F 48 (99)
T ss_dssp SCSEEEECCSTTHHHHHHHHHHHHHHHSTTCCEEECCSCCCHHHH----------------------------------H
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH----------------------------------H
Confidence 568999999999999999999999998 9999999999999999 9
Q ss_pred HHHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 582 REAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 582 r~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
++|++.|+||++|+|++|.++|+|+||+|++|+|..+++++++++|++++
T Consensus 49 k~A~~~~~~~~iiiG~~E~~~~~v~vk~l~~~~q~~v~~~el~~~l~~~L 98 (99)
T d1kmma1 49 ARADKWGARVAVVLGESEVANGTAVVKDLRSGEQTAVAQDSVAAHLRTLL 98 (99)
T ss_dssp HHHHHHTCSEEEECCHHHHHTTEEEEEETTTCCEEEEEHHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhcCchhhhccEEEEEECCCCCEEEEeHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999875
No 15
>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=99.72 E-value=3.7e-18 Score=147.54 Aligned_cols=92 Identities=17% Similarity=0.402 Sum_probs=89.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHH
Q 006680 505 RQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREA 584 (635)
Q Consensus 505 ~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A 584 (635)
.+|+|||+++...++|.+|++.||++|++|++|++++++++| +++|
T Consensus 4 ~~V~i~~~g~~~~~~~~~l~~~Lr~~gi~v~~d~~~~~l~kq----------------------------------~~~A 49 (97)
T d1wu7a1 4 KSVYICRVGKINSSIMNEYSRKLRERGMNVTVEIMERGLSAQ----------------------------------LKYA 49 (97)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHTTTCEEEECCSCCCHHHH----------------------------------HHHH
T ss_pred ceEEEEEeCHHHHHHHHHHHHHHHHCCCEEEEECCCCcHHHH----------------------------------HHHH
Confidence 589999999999999999999999999999999999999999 9999
Q ss_pred hhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHH
Q 006680 585 QLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEK 630 (635)
Q Consensus 585 ~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~ 630 (635)
++.|+||++|||++|.++|+|+||++++|+|..+++++++++|.+.
T Consensus 50 ~~~~~~~~iiiG~~E~~~~~v~ik~l~~~~q~~v~~~~l~~~l~~~ 95 (97)
T d1wu7a1 50 SAIGADFAVIFGERDLERGVVTIRNMYTGSQENVGLDSVVEHLISQ 95 (97)
T ss_dssp HHTTCSEEEEEEHHHHHTTEEEEEETTTCCEEEEEGGGHHHHHHHC
T ss_pred HhcCCCeEEecCCccccCCceEEEECCCCCEEEEeHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998764
No 16
>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.71 E-value=2.5e-18 Score=147.82 Aligned_cols=93 Identities=20% Similarity=0.468 Sum_probs=89.3
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHH
Q 006680 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVR 582 (635)
Q Consensus 503 sp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir 582 (635)
+..+++|||++++..++|++|++.||++|++|++|+++.+++|| ++
T Consensus 3 ~~~dv~ii~~~~~~~~~a~~i~~~Lr~~gi~v~~d~~~~~l~kq----------------------------------~~ 48 (95)
T d1qe0a1 3 ENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQ----------------------------------MK 48 (95)
T ss_dssp CCCSEEEEECHHHHHHHHHHHHHHHHTTTCCEEECCSCCCHHHH----------------------------------HH
T ss_pred CCCeEEEEEeCHHHHHHHHHHHHHHHHCCCcEEecCCCCCHHHH----------------------------------HH
Confidence 35689999999999999999999999999999999999999999 99
Q ss_pred HHhhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHH
Q 006680 583 EAQLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKE 629 (635)
Q Consensus 583 ~A~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~ 629 (635)
+|++.|+||++|||++|.++|+|+||+|+++++..++++++++++++
T Consensus 49 ~A~~~~~~~~iiiG~~E~~~~~v~vk~l~~~~q~~i~~~el~~~l~k 95 (95)
T d1qe0a1 49 QADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK 95 (95)
T ss_dssp HHHHTTCSEEEEECHHHHHHTCEEEEETTTCCEEEECTTHHHHHHHC
T ss_pred HHHhcCCCEEEEEccchhhCCEEEEEECCCCCEEEEeHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998863
No 17
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}
Probab=99.67 E-value=1e-17 Score=169.81 Aligned_cols=148 Identities=16% Similarity=0.261 Sum_probs=115.5
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceee-ecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCeEEEEEccCC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQ-QDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELKLSTRP 388 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~-Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~~~l~ls~r~ 388 (635)
.|||+||++++++|.+||+|.++ ..|++|+|||+ |+|+|+||...+ +++++..+++++..+|+.+|+++.+...+.+
T Consensus 116 ~Syr~LP~r~~e~~~~fR~E~~~-~~GllR~reF~~~dd~~~~~~~~~~~~~~~~~~~~~y~~if~~l~l~~~~~~~~~~ 194 (268)
T d1nj8a3 116 KVHTDLPIKIYQIVNTFRYETKH-TRPLIRLREIMTFKEAHTAHSTKEEAENQVKEAISIYKKFFDTLGIPYLISKRPEW 194 (268)
T ss_dssp CBTTSCCCCEEEEECCBCCCCSC-CBTTTBCSBCSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECTT
T ss_pred cchhhhheEEeeccccccccccc-cccceeEEEEeeechhceeccccchhhHHHHHHHHHHHHHHHhcCcceeecccccc
Confidence 38999999999999999999654 59999999997 788899998765 8899999999999999999999554432222
Q ss_pred CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhcee-eeecCCCeeeeeEEEecCCC
Q 006680 389 EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAEDEA 467 (635)
Q Consensus 389 ~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~-~ld~~l~~~~~L~Y~~~~e~ 467 (635)
+...+. ..++++...++.++.++++|+ +++...|.+||+.|.+++ |
T Consensus 195 ~~~~~~--------------------------------~~~~~~~~~~~~g~~~e~~t~~~lg~~~s~~f~l~y~~~d-g 241 (268)
T d1nj8a3 195 DKFPGA--------------------------------EYTMAFDTIFPDGRTMQIATVHNLGQNFSKTFEIIFETPT-G 241 (268)
T ss_dssp SCCTTC--------------------------------SEEEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTT-S
T ss_pred ccccch--------------------------------hcccchhhhhhccccEEEeeecccCCCcChhcCCEEECCC-C
Confidence 111111 011223333446778899998 899888999999999987 6
Q ss_pred ccccccccccceeeeHHHHHHHHHHHhC
Q 006680 468 KTERPVMIHRAILGSVERMFAILLEHYK 495 (635)
Q Consensus 468 ~~~~p~~i~~ai~GgveR~~~~l~e~~~ 495 (635)
+.+. +|++++|+.||++++|+|+++
T Consensus 242 ~~~~---~h~~~~G~~eR~ia~liE~h~ 266 (268)
T d1nj8a3 242 DKDY---AYQTCYGISDRVIASIIAIHG 266 (268)
T ss_dssp SEEE---CEEEEEEECTHHHHHHHHHHC
T ss_pred CCcc---eeeccCcHHHHHHHHHHHHhC
Confidence 5553 478999999999999999874
No 18
>d1h4vb1 c.51.1.1 (B:326-421) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=99.66 E-value=2.3e-17 Score=142.10 Aligned_cols=92 Identities=20% Similarity=0.290 Sum_probs=88.3
Q ss_pred ceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHHH
Q 006680 505 RQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVREA 584 (635)
Q Consensus 505 ~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~A 584 (635)
.+|+|+|++++...+|.++++.|| +|+.|++|+++++++|| +++|
T Consensus 4 pdv~iv~~~~~~~~~a~~i~~~LR-~~~~~~~~~~~~~l~kq----------------------------------~k~A 48 (96)
T d1h4vb1 4 PDLYLIPLTEEAVAEAFYLAEALR-PRLRAEYALAPRKPAKG----------------------------------LEEA 48 (96)
T ss_dssp CSEEEEESSHHHHHHHHHHHHHHT-TTSCEEECSSCCCHHHH----------------------------------HHHH
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHH-cCceEEEECCCCCHHHH----------------------------------HHHH
Confidence 379999999999999999999997 59999999999999999 9999
Q ss_pred hhcCCcEEEEEcccccccCeEEEEEcCCCceecccHHHHHHHHHHHH
Q 006680 585 QLAQYNFILVVGEEEAKSGQVSVRVRDQGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 585 ~~~~~~~~lvvG~~E~~~~~V~vr~~~~~~~~~~~~e~l~~~~~~~~ 631 (635)
++.|+||++|||++|.++|+|+||++++|+|..++++|++++|++.+
T Consensus 49 ~~~~~~~~iiiG~~E~~~~~v~vK~l~~~~q~~v~~~el~~~l~~~l 95 (96)
T d1h4vb1 49 LKRGAAFAGFLGEDELRAGEVTLKRLATGEQVRLSREEVPGYLLQAL 95 (96)
T ss_dssp HHTTCSEEEEECHHHHHHTEEEEEETTTCCEEEEEGGGHHHHHHHHC
T ss_pred HHcCCCEEEEecchhHhcCcEEEEECCCCcEEEEEHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999998764
No 19
>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.62 E-value=1.8e-17 Score=170.00 Aligned_cols=154 Identities=15% Similarity=0.156 Sum_probs=109.1
Q ss_pred hhhcccccceEEeeeccccccccCCCC--cCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCCe-EEEEEc
Q 006680 309 LKHAFAELPLRLADFGVLHRNEASGAL--TGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGFT-YELKLS 385 (635)
Q Consensus 309 L~esyrelPlrv~~vG~lnR~E~~g~l--~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~~-~~l~ls 385 (635)
+..++++||++++++|.+||+|.++.. +||+|+|||+|+|+|+||.+++.++++..++.....+|+.||++ -.+++.
T Consensus 131 ~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~~~~~~~~~~~~~~~lGi~~~~~~~~ 210 (290)
T d1g5ha2 131 LDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHRLLWWRKFAMSPSNFSSA 210 (290)
T ss_dssp HHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTCSSGGGEEEE
T ss_pred HhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCCcchHHHHHHHHHHHHHHHHHcCCChhheeec
Confidence 345889999999999999999988744 78999999999999999999999999999999999999999997 445555
Q ss_pred cCCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceeeeecCCCeeeeeEEEecC
Q 006680 386 TRPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQLDFQLPDRFNLGYSAED 465 (635)
Q Consensus 386 ~r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~ld~~l~~~~~L~Y~~~~ 465 (635)
+.+..+. . .+|+. ++..||...+.+|+++.+.+|.. +++.++++.|.+.+
T Consensus 211 ~~~~~~a-~-~~~di----------e~~~p~g~~Ei~g~~~r~D~dl~------------------~~~~~~~l~y~~~d 260 (290)
T d1g5ha2 211 DCQDELG-R-KGSKL----------YYSFPWGKEPIETLWNLGDQELL------------------HTYPGNVSTIQGRD 260 (290)
T ss_dssp EEECTTS-C-EEEEE----------EEEETTEEEEEEEEEEEESHHHH------------------HHSTTCGGGSCEEE
T ss_pred ccchhhc-c-cceee----------EEcCCCCEEEEEEecCChhhhhh------------------hcccccCCEEEccC
Confidence 5443221 0 01100 13345666666677766554431 22345677777766
Q ss_pred CCccccccccccceeeeHHH-HHHHHHHHh
Q 006680 466 EAKTERPVMIHRAILGSVER-MFAILLEHY 494 (635)
Q Consensus 466 e~~~~~p~~i~~ai~GgveR-~~~~l~e~~ 494 (635)
..+.-.|+|||+| +|+|| ++|+|+|+|
T Consensus 261 ~~~k~vP~vIe~s--~gldR~~lAiL~e~Y 288 (290)
T d1g5ha2 261 GRKNVVPCVLSVS--GDVDLGTLAYLYDSF 288 (290)
T ss_dssp TTEEECCEEEEEE--EEHHHHHHHHHHHHE
T ss_pred CCeeEeeEEEeCc--cchHHHHHHHHHHHh
Confidence 3344479999976 69999 689899987
No 20
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}
Probab=99.55 E-value=1.1e-15 Score=153.89 Aligned_cols=147 Identities=17% Similarity=0.283 Sum_probs=106.2
Q ss_pred hcccccceEEeeeccccccccCCCCcCceeeceeee-cCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCeEEEE-EccC
Q 006680 311 HAFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQ-DDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFTYELK-LSTR 387 (635)
Q Consensus 311 esyrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q-~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~~~l~-ls~r 387 (635)
.||++||++++++|.+||+|.++. .||.|+|||+| .|+|+|+...+ ++.|+..+++.+..+|+.+|+++.+. .++.
T Consensus 113 ~SyrdLPlr~~q~~~~fR~E~~~~-~Gl~R~reF~~~~d~~~~~~~~~~~~~e~~~~~~~~~~~~~~l~l~~~~~~~~~~ 191 (265)
T d1nj1a3 113 RSHTDLPMRFYQVVNTFRYETKHT-RPLIRVREITTFKEAHTIHATASEAEEQVERAVEIYKEFFNSLGIPYLITRRPPW 191 (265)
T ss_dssp CBTTTCCEEEEEEEEEECCCCSCC-BTTTBCSEEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCTT
T ss_pred ccccccceEEEeeccceeeecccC-cCCEEEEEEEEeccceeecCCHHHHHHHhhhhHHHHHHHHhhcCCceeEEEccCc
Confidence 389999999999999999997665 99999999965 67777766544 88999999999999999999995543 3222
Q ss_pred CCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhcee-eeecCCCeeeeeEEEecCC
Q 006680 388 PEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATL-QLDFQLPDRFNLGYSAEDE 466 (635)
Q Consensus 388 ~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~-~ld~~l~~~~~L~Y~~~~e 466 (635)
....-+ ......+....+|+++ +++++ +++...|.+||+.|.+.+
T Consensus 192 ~~~~~~---------------------~~~~~~~~~~~~g~~~------------e~~~~~~lg~~~s~~f~i~y~d~~- 237 (265)
T d1nj1a3 192 DKFPGS---------------------EYTVAFDTLMPDGKTL------------QIGTVHNLGQTFARTFEIKFETPE- 237 (265)
T ss_dssp TSCTTC---------------------SEEEEEEEECTTSCEE------------EEEEEEEEETHHHHHHTCEEECTT-
T ss_pred cccccc---------------------ccccchhhcccccccc------------eecchhhcchhhHHhcCCEEECCC-
Confidence 111000 0111111112234443 44544 566677899999999887
Q ss_pred CccccccccccceeeeHHHHHHHHHHHhC
Q 006680 467 AKTERPVMIHRAILGSVERMFAILLEHYK 495 (635)
Q Consensus 467 ~~~~~p~~i~~ai~GgveR~~~~l~e~~~ 495 (635)
++.+ ++|++++|+.||++++|+|+++
T Consensus 238 g~~~---~~h~~~~G~~eR~i~~llE~~~ 263 (265)
T d1nj1a3 238 GDHE---YVHQTCYGLSDRVIASVIAIHG 263 (265)
T ss_dssp SCEE---ECEEEEEEECTHHHHHHHHHTC
T ss_pred CCEE---EEEEecccHHHHHHHHHHHHhC
Confidence 4433 6899999999999999999874
No 21
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}
Probab=99.53 E-value=1.5e-15 Score=152.16 Aligned_cols=146 Identities=21% Similarity=0.284 Sum_probs=117.1
Q ss_pred cccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCCC
Q 006680 312 AFAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRPE 389 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~~ 389 (635)
+|++||+++++++.+||+|.++. |+.|.|+|.|.|+|+|+.... .+.|+..++.+...++..++.. ..+.+++.++
T Consensus 122 s~~~LPlr~~~~~~~fR~E~~~~--g~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (272)
T d1hc7a2 122 SWRDLPQLLNQWGNVVRWEMRTR--PFLRTSEFLWQEGHTAHATREEAEEEVRRMLSIYARLAREYAAIPVIEGLKTEKE 199 (272)
T ss_dssp BGGGCCEEEEEEEEEECCCSSCB--TTTBCSEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTT
T ss_pred cccccceeeeecccccccccccc--cccceEEEEEEhhhhhhcccccchhHHHHHHHHHHHHHHHhcchhhhcCcccccc
Confidence 99999999999999999999984 788999999999999998876 8888888999998888777665 5555655543
Q ss_pred CcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhhhhhhceee-eecCCCeeeeeEEEecCCCc
Q 006680 390 KYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKRKFQCATLQ-LDFQLPDRFNLGYSAEDEAK 468 (635)
Q Consensus 390 ~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r~~~~~t~~-ld~~l~~~~~L~Y~~~~e~~ 468 (635)
...+ +++ ..++...+..++.++++|++ +|++.|.|||+.|.+++ ++
T Consensus 200 ~~~~------------------------------~~~--~~~~~~~~~~~r~~Ev~t~~~l~~~~s~r~~i~Y~d~d-g~ 246 (272)
T d1hc7a2 200 KFAG------------------------------AVY--TTTIEALMKDGKALQAGTSHYLGENFARAFDIKFQDRD-LQ 246 (272)
T ss_dssp SCTT------------------------------SSE--EEEEEEECTTSCEEEEEEEEEEETHHHHHTTCEEECTT-SC
T ss_pred cccc------------------------------cce--eccccccccCCCCEEcccceecccccchhcCCEEECCC-CC
Confidence 2211 111 12233345667889999999 89999999999999887 43
Q ss_pred cccccccccceeeeHHHHHHHHHHHhC
Q 006680 469 TERPVMIHRAILGSVERMFAILLEHYK 495 (635)
Q Consensus 469 ~~~p~~i~~ai~GgveR~~~~l~e~~~ 495 (635)
+.++|++++|+.||++++|+|+++
T Consensus 247 ---~~~vH~~~~G~~eR~i~allE~h~ 270 (272)
T d1hc7a2 247 ---VKYVHTTSWGLSWRFIGAIIMTHG 270 (272)
T ss_dssp ---EEECEEEEEEEETHHHHHHHHHHC
T ss_pred ---EEEEEEccccHHHHHHHHHHHHhC
Confidence 457899999988999999999974
No 22
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}
Probab=99.45 E-value=2.3e-14 Score=113.90 Aligned_cols=61 Identities=39% Similarity=0.516 Sum_probs=58.8
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
+|+||||||+.++++. ++|+.|+|+.|++++++.+++|+|||++|||++||++||+|+++|
T Consensus 1 M~~ItlPDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vng~l~dL~~~l~~d~~veiiT 61 (62)
T d1tkea1 1 MPVITLPDGSQRHYDH-AVSPMDVALDIGPGLAKACIAGRVNGELVDACDLIENDAQLSIIT 61 (62)
T ss_dssp CCEEECTTSCEEECSS-CBCHHHHHHHHCHHHHHHCCEEEETTEEEETTCCBCSCEEEEEEC
T ss_pred CCEEECCCCCEEEcCC-CCCHHHHHHHHCchhhheEEEEEECCEEeCCCcCcCCCCEEEEEe
Confidence 4889999999999998 999999999999999999999999999999999999999999997
No 23
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}
Probab=99.39 E-value=3.6e-14 Score=111.68 Aligned_cols=59 Identities=41% Similarity=0.604 Sum_probs=56.9
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEe
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLF 143 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl 143 (635)
|+|++|||+.+++++ |+|++|+|+.|++++++.+++|+|||++|||++||+.||+|+++
T Consensus 1 I~ItlPDG~~~~~~~-g~T~~diA~~I~~~l~k~avaa~vNg~~~dL~~~l~~d~~veii 59 (59)
T d1nyra2 1 INIQFPDGNKKAFDK-GTTTEDIAQSISPGLRKKAVAGKFNGQLVDLTKPLETDGSIEIV 59 (59)
T ss_dssp CBBCCTTSCCCBCCT-TCCHHHHHHTTCHHHHHHCCEEEETTEEECTTSCCCSCBCCCEE
T ss_pred CEEECCCCCEEEcCC-CCCHHHHHHHHChhhhheEEEEEECCEEccCCcCcCCCCEEEEC
Confidence 689999999999998 99999999999999999999999999999999999999999986
No 24
>d2e1ba2 d.67.1.2 (A:88-216) AlaX-M trans-editing enzyme, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=99.38 E-value=1.4e-12 Score=117.77 Aligned_cols=110 Identities=22% Similarity=0.179 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHhCCc--eEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh--cCCeEEEEeCHHHHHHH
Q 006680 155 WHSSAHILGQAIEQQYGCK--LCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA--KQPFERIEVTRDQALEM 230 (635)
Q Consensus 155 ~hS~ahlL~~Av~~lfg~~--L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI--~~pIer~~vsreeAle~ 230 (635)
.||++|||++|++++||.+ .+.|..++ .+..++||.+ +..++ ++.+.||+.++++| +.|+....
T Consensus 11 ~HTa~Hll~~al~~~~g~~~~~~~G~~i~-~~~~r~Df~~-~~~l~-~~~~~ie~~~n~~I~~~~~v~~~~--------- 78 (129)
T d2e1ba2 11 IHTGLHLLEHVLNEVLGEGNWQLVGSGMS-VEKGRYDIAY-PENLN-KYKEQIISLFNKYVDEGGEVKIWW--------- 78 (129)
T ss_dssp HHHHHHHHHHHHHHHHTTTSCEEEECCBC-SSEEEEEEEC-SSCGG-GGHHHHHHHHHHHHHHCCBEEEEE---------
T ss_pred HhHHHHHHHHHHHHhcCCCcccccccccc-cceEEEEEec-ccccc-hHHHHHHHHHHHHHHhccchhhhh---------
Confidence 5999999999999999753 34566664 1567899987 44555 45589999999999 99996432
Q ss_pred hhcCcchhhhcccCCCCCeEEEEEeCCe-EeecCCCCCCCCccccceEEeecccceeccCCCCCCcceee
Q 006680 231 FSDNNFKVEIINDLPADKTITVYRCGPL-VDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRVY 299 (635)
Q Consensus 231 F~~~~~K~~LL~~~~~~~~v~vYr~g~~-iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRIy 299 (635)
.+.++++.+|++ +..|.||||+|||+|+.|+|++.++ ......||+
T Consensus 79 ----------------~~~~Riv~I~~~d~~~CgGTHV~~T~eIg~i~I~~~~~-------~gkg~~RI~ 125 (129)
T d2e1ba2 79 ----------------EGDRRYTQIRDFEVIPCGGTHVKDIKEIGHIKKLKRSS-------IGRGKQRLE 125 (129)
T ss_dssp ----------------SSSCEEEEETTSCEECCCSCCCSBGGGTCCEEEEEEEE-------EETTEEEEE
T ss_pred ----------------cccceEEEeccccccccCCCCCcchhhCccEEEEEEEE-------EeCCcEEEE
Confidence 134688999998 5689999999999999999998764 235566774
No 25
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=99.27 E-value=1.1e-12 Score=135.09 Aligned_cols=158 Identities=27% Similarity=0.446 Sum_probs=116.3
Q ss_pred cccccceEEeeeccccccccCC---CCcCceeeceeeecCEEEEecCch--hHHHHHHHHHHHHHHHHHhCCeEEEEEcc
Q 006680 312 AFAELPLRLADFGVLHRNEASG---ALTGLTRVRRFQQDDAHIFCRESQ--IKDEVRGVLEFIDYAYRIFGFTYELKLST 386 (635)
Q Consensus 312 syrelPlrv~~vG~lnR~E~~g---~l~gLiRvREF~Q~d~~if~~~~~--~~~E~~~~l~~~~~~~~~~G~~~~l~ls~ 386 (635)
++++||+|+..++.+||.|... ..+||+|++||.+.++++||.+++ .+.+...++.....+|+.||++|.+..-.
T Consensus 130 ~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lpyrvv~~~ 209 (311)
T d1seta2 130 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELPYRLVEVA 209 (311)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred hhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCcchhcccc
Confidence 5789999999999999999854 457999999999999999997754 66677789999999999999998766411
Q ss_pred CCCCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHH-HHHhhhhhhhceee--eecCCCeeeeeEEEe
Q 006680 387 RPEKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISV-SDALKRKFQCATLQ--LDFQLPDRFNLGYSA 463 (635)
Q Consensus 387 r~~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~-~d~l~r~~~~~t~~--ld~~l~~~~~L~Y~~ 463 (635)
.||... ++. -+.|+.+ ..+.++..++++.. .||| ++|+++.|.+
T Consensus 210 -----~~dl~~-------------------------~a~--~~~diE~w~P~~~~y~Ev~S~sn~~d~q-srRl~i~y~~ 256 (311)
T d1seta2 210 -----TGDMGP-------------------------GKW--RQVDIEVYLPSEGRYRETHSCSALLDWQ-ARRANLRYRD 256 (311)
T ss_dssp -----TTTSCT-------------------------TCS--EEEEEEEEEGGGTEEEEEEEEEECTTHH-HHHHTCEEEC
T ss_pred -----CCCCch-------------------------HHH--hhhHHHHhHhhcCCcccccCceecchHH-HhhcccEEEC
Confidence 122211 111 1222221 23445555665533 3466 7899999998
Q ss_pred cCCCccccccccccceeeeHHHHHHHHHHHhC---CC--CCCCCCC
Q 006680 464 EDEAKTERPVMIHRAILGSVERMFAILLEHYK---GK--WPFWLSP 504 (635)
Q Consensus 464 ~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~~---g~--~p~~lsp 504 (635)
++ ++.+.|.++|.+ ++.++|++++|+|+|. |. .|.+|.|
T Consensus 257 ~d-g~~~~~htlngT-~~ai~R~l~allEn~q~~dG~v~iP~~L~p 300 (311)
T d1seta2 257 PE-GRVRYAYTLNNT-ALATPRILAMLLENHQLQDGRVRVPQALIP 300 (311)
T ss_dssp TT-SCEEECEEEEEE-EEEETHHHHHHHHHHBCTTSCEECCGGGHH
T ss_pred CC-CCEEeEEEecCc-hhHHHHHHHHHHHhccCCCCcEeCChhhhh
Confidence 87 777888888855 5568999999999985 53 6777776
No 26
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=98.63 E-value=8.3e-08 Score=97.65 Aligned_cols=67 Identities=25% Similarity=0.405 Sum_probs=55.4
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r 387 (635)
...|+|++++|++||++.++. +|.|||+|.|+++||.++. +|+| ++.++.++++.+|++ +.+.+++.
T Consensus 98 ~~~p~R~~Y~g~VfR~~~~~~----~~~rE~~Q~G~EiiG~~~~~ad~E---ii~l~~~~l~~~g~~~~~i~i~~~ 166 (325)
T d1qe0a2 98 PNQPIKLYYNGPMFRYERKQK----GRYRQFNQFGVEAIGAENPSVDAE---VLAMVMHIYQSFGLKHLKLVINSV 166 (325)
T ss_dssp SSCSEEEEEEEEEECC-----------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTCCCEEEEEEEC
T ss_pred cccchhhheecceeeeccccC----CccceeeecceeecCCcCcHHHHH---HHHHHHHHHHhhCCcCcceeeccc
Confidence 357899999999999999887 8999999999999999988 9999 899999999999997 89999664
No 27
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}
Probab=98.63 E-value=5.6e-08 Score=99.12 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=57.0
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTR 387 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r 387 (635)
..|+|++++|++||++.++. +|.|||+|.|++++|.++. +|+| ++.++.++++.+|++ +.+.+++.
T Consensus 98 ~~p~r~~Y~g~VfR~~~~~~----gr~re~~Q~g~EiiG~~~~~ad~E---ii~l~~~~l~~l~~~~~~~~i~~~ 165 (324)
T d1h4vb2 98 PQPVRLWMAGPMFRAERPQK----GRYRQFHQVNYEALGSENPILDAE---AVVLLYECLKELGLRRLKVKLSSV 165 (324)
T ss_dssp SSSEEEEEEEEEECCCCC--------CCEEEEEEEEEESCCCHHHHHH---HHHHHHHHHHHTTCCSCEEEEEEC
T ss_pred chhhhheeeCcccccCcccC----CCcceeccccccccCCCChHHHHH---HHHHHHHHHHHhcccCcceeeecc
Confidence 45899999999999999987 8999999999999999987 9999 899999999999997 88888664
No 28
>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}
Probab=98.48 E-value=5.1e-08 Score=101.99 Aligned_cols=183 Identities=21% Similarity=0.172 Sum_probs=107.3
Q ss_pred CCCcceeeccccCChhhhhhccc-ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHH
Q 006680 292 RESLQRVYGISYPDKKRLKHAFA-ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFID 370 (635)
Q Consensus 292 ~~~lqRIyG~~fp~~~~L~esyr-elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~ 370 (635)
+++.|-+ |.+-+.+.++.+ .+|++++++|..||+|.+++ ++++|+|||+|.+++.||.++..+.-+.-.+.-..
T Consensus 187 PETAQGi----FvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr-~~l~R~REF~q~EiE~Fv~P~~~~~~~~yw~~~~~ 261 (394)
T d1atia2 187 PETAQGI----FVNFKNVLDATSRKLGFGIAQIGKAFRNEITPR-NFIFRVREFEQMEIEYFVRPGEDEYWHRYWVEERL 261 (394)
T ss_dssp SSSHHHH----HHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCC-TGGGSCSEEEEEEEEEEECGGGHHHHHHHHHHHHH
T ss_pred hhhhhHH----HHHHHHHHHHcccCCCceeeeeccccccccCcc-cCCcccccceeeeeEEEEeCCcchHHHHHHHHHHH
Confidence 4455554 344456666665 79999999999999999999 99999999999999999999875554444677778
Q ss_pred HHHHHhCCe-EEEEEccCC--CCcCCChhhHHHHHHHHHHHHHHcCCCcEEcCCCCcccccchhHHHHHHhhh--hhhhc
Q 006680 371 YAYRIFGFT-YELKLSTRP--EKYLGDLATWEKAEAALTEALNEFGKPWQINEGDGAFYGPKIDISVSDALKR--KFQCA 445 (635)
Q Consensus 371 ~~~~~~G~~-~~l~ls~r~--~~~lg~~~~~~~a~~~l~~~l~~~g~~~~~~~g~~af~gpkid~~~~d~l~r--~~~~~ 445 (635)
..|..+|++ -.++....+ |-......+||. ++ .+..-|..-.|-. -+-|..|+.-.+. ...++
T Consensus 262 ~f~~~lGi~~~~lrfrqh~~~ElAHYa~~~~Di------E~--~fp~Gw~El~GiA----~RtdyDL~~H~k~~~~~~~~ 329 (394)
T d1atia2 262 KWWQEMGLSRENLVPYQQPPESSAHYAKATVDI------LY--RFPHGSLELEGIA----QRTDFDLGSHTKDQEALGIT 329 (394)
T ss_dssp HHHHHTTCCGGGEEEEECCTTTSCTTCSEEEEE------EE--EETTEEEEEEEEE----ECTTHHHHHHCSSTTTTTCC
T ss_pred HHHHHhcCCccceeEEeecchhhhhcccceEEE------EE--ecCCCcEechhhh----ccchhhHHHHhhhccccchh
Confidence 888999996 334443332 233344556652 00 1111122211110 1112222211100 00000
Q ss_pred eeeeecCCCeeeeeEEEecCCCccccccccccceeeeHHHHHHHHHHHh
Q 006680 446 TLQLDFQLPDRFNLGYSAEDEAKTERPVMIHRAILGSVERMFAILLEHY 494 (635)
Q Consensus 446 t~~ld~~l~~~~~L~Y~~~~e~~~~~p~~i~~ai~GgveR~~~~l~e~~ 494 (635)
...++ +-...-+|.|.+...++.-.|.+|. .++|++|++.+++++.
T Consensus 330 ~~~~~-~~~s~~~l~~~d~~~~~~~iPhVIE--PS~GldR~~la~L~~a 375 (394)
T d1atia2 330 ARVLR-NEHSTQRLAYRDPETGKWFVPYVIE--PSAGVDRGVLALLAEA 375 (394)
T ss_dssp SCCCC-CSCCCSCCCEECSSSCCEECCEEEE--EEEEHHHHHHHHHHHH
T ss_pred hhhhc-CCCccceeEEEccCCCcEEeeeEEE--cCCCccHHHHHHHHHH
Confidence 00011 0001124778766545666788775 6789999888887763
No 29
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}
Probab=98.47 E-value=3.5e-07 Score=92.77 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=55.1
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT 379 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~ 379 (635)
...|.|++++|.+||++.++. +|.|||+|.|++|||.++. +|.| ++.++.++++.+|++
T Consensus 96 ~~~p~r~~y~g~v~r~~~~~~----gr~re~~Q~g~EiiG~~~~~ad~E---ii~l~~~~l~~lgl~ 155 (322)
T d1kmma2 96 YNQEQRLWYIGPMFRHERPQK----GRYRQFHQLGCEVFGLQGPDIDAE---LIMLTARWWRALGIS 155 (322)
T ss_dssp TTCCEEEEEEEEEECCCCCBT----TBCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHTCG
T ss_pred hhhhhhHhhcccccccCCCCC----CccchhhhhhHHHhccccchhHHH---HHHHHHHHHHhcCCC
Confidence 357899999999999999987 8999999999999999887 8999 899999999999996
No 30
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Probab=98.35 E-value=4.7e-07 Score=90.48 Aligned_cols=65 Identities=17% Similarity=-0.012 Sum_probs=58.5
Q ss_pred cccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 314 AELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 314 relPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
.+.|+|++++|++||++.+ +.|||+|.++++||.++. +|+| ++.++.++++.+|++ +.++||++.
T Consensus 67 ~~~p~k~~Y~g~VfR~~~~-------~~re~~Q~G~EiiG~~~~~aD~E---vi~l~~~~l~~lgi~~~~i~l~~~~ 133 (275)
T d1usya_ 67 PDSQIKVWYADFVYRYSGS-------DLVAEYQLGLEKVPRNSLDDSLE---VLEIIVESASEFFEGPVIVEIGHTG 133 (275)
T ss_dssp TCCCEEEECCEEEEEEETT-------EEEEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHHCCSCEEEEEEETT
T ss_pred CCCCeeeeEEeeEEEeCCC-------cccceeecCceeechhhHHHHHH---HHHHHHHHHHhhcccccEEEecCcc
Confidence 3568999999999998753 469999999999999887 9999 899999999999997 999999985
No 31
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}
Probab=98.23 E-value=4.6e-07 Score=91.76 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=56.7
Q ss_pred ccccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe-EEEEEccCC
Q 006680 313 FAELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT-YELKLSTRP 388 (635)
Q Consensus 313 yrelPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~-~~l~ls~r~ 388 (635)
....|.|++++|.+||++.++. .|.|||+|.|+|+||.++. +|+| ++.++.++++.+|++ +.+.++++.
T Consensus 92 ~~~~~~r~~Y~g~vfR~~~~~~----~r~rE~~Q~g~EiiG~~~~~ad~E---ii~l~~e~l~~lgi~~~~i~i~~~~ 162 (318)
T d1z7ma1 92 KDSTSARYSYFGKIFRKEKRHK----GRSTENYQIGIELFGESADKSELE---ILSLALQVIEQLGLNKTVFEIGSAK 162 (318)
T ss_dssp CSCCCEEEEEEEECCCCCC-----------CCEEEEEEEESSCHHHHHHH---HHHHHHHHHHHHTCSSEEEEEEEHH
T ss_pred cccCCcccccccceeEEccccc----cccchhhhhheeccccchhhHHHH---HHHHHHHHHHHhhhccccccchhhh
Confidence 3467899999999999999887 8999999999999999886 8889 899999999999998 999998863
No 32
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=97.89 E-value=5.7e-06 Score=83.95 Aligned_cols=67 Identities=30% Similarity=0.457 Sum_probs=61.3
Q ss_pred ccceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCch-hHHHHHHHHHHHHHHHHHhCCe--EEEEEccCC
Q 006680 315 ELPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQ-IKDEVRGVLEFIDYAYRIFGFT--YELKLSTRP 388 (635)
Q Consensus 315 elPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~-~~~E~~~~l~~~~~~~~~~G~~--~~l~ls~r~ 388 (635)
..|+|++++|.+||++.++. +|.|||+|.|++|||.++. +|+| ++.++.++++.+|++ +.+.++++.
T Consensus 95 ~~p~k~~y~g~VfR~~~~~~----g~~re~~Q~G~EiiG~~~~~~D~E---ii~l~~~~l~~~~~~~~~~i~l~~~~ 164 (327)
T d1wu7a2 95 QRPLRWYSFPKVWRYEEPQA----GRYREHYQFNADIFGSDSPEADAE---VIALASSILDRLGLQDIYEIRINSRK 164 (327)
T ss_dssp CSSEEEEECCEEECCCCSCS----SCCSEEEEEEEEEESCCSHHHHHH---HHHHHHHHHHHTTTTTSEEEEEEEHH
T ss_pred cccceeeccCcceecccccc----CCcchhhhhhhhhcCCcchHHHHH---HHHHHHHHHhccccccceeecccchh
Confidence 46899999999999999887 8999999999999999987 9999 899999999999984 889998864
No 33
>d1v95a_ c.51.1.1 (A:) Nuclear receptor coactivator 5 (KIAA1637) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.35 E-value=0.00024 Score=61.98 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=82.7
Q ss_pred CCceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeC--CCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhh
Q 006680 503 SPRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDT--TDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVS 580 (635)
Q Consensus 503 sp~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~--~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (635)
.|.+.-||.++.+..+||..|-..|++.|+.||+=. ++-.+.+-
T Consensus 7 ~P~DCeIivvnk~~~~YAe~Ie~rL~~~Gl~vd~lf~n~dv~l~~a---------------------------------- 52 (130)
T d1v95a_ 7 GPVDCSVIVVNKQTKDYAESVGRKVRDLGMVVDLIFLNTEVSLSQA---------------------------------- 52 (130)
T ss_dssp CCCTEEEEESSSGGGHHHHHHHHHHHTTTCCEEEEECTTSSCHHHH----------------------------------
T ss_pred CCcceEEEEECCccchHHHHHHHHHHhcCCEEEEEecCCcccHHHH----------------------------------
Confidence 478999999999999999999999999999999753 46778877
Q ss_pred HHHHhhcCCcEEEEEcccccccCeEEEEEcC--CCceecccHHHHHHHHHHHH
Q 006680 581 VREAQLAQYNFILVVGEEEAKSGQVSVRVRD--QGDHSNMSIEDLLKHFKEKL 631 (635)
Q Consensus 581 ir~A~~~~~~~~lvvG~~E~~~~~V~vr~~~--~~~~~~~~~e~l~~~~~~~~ 631 (635)
+.+....|.||+|+|-.....-+.+||.-+- ..+|.+||+||.+..+....
T Consensus 53 L~~vs~~G~~faIlVt~qn~~~~S~TvnIL~g~pqEHRNMPleDAl~lva~~f 105 (130)
T d1v95a_ 53 LEDVSRGGSPFAIVITQQHQIHRSCTVNIMFGTPQEHRNMPQADAMVLVARNY 105 (130)
T ss_dssp HHHHHHHTCSEEEEECHHHHHHTEEEEEECSSSCCEEEEEEHHHHHHHHHHHH
T ss_pred HHHHHhCCCceEEEEeccchhhcceEeeeecCChHHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999999888999998875 46899999999887765443
No 34
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=92.89 E-value=0.043 Score=43.73 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=45.1
Q ss_pred EEeeccCCCHHHHHhhhccccccceEEEEE--cCEEeeccccccCCCCeEEee
Q 006680 94 KEGKRWETSPMDIAQGISKSLAANALISMV--NGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 94 ~~~~~~~tTp~diak~is~~~~~~iV~AkV--Ng~l~DL~~pl~~d~~lefl~ 144 (635)
+..++ |+|+.|+|..+...+++..+.|++ ||+...++++|+....|+.+|
T Consensus 24 ~~Lp~-GsTv~D~A~~IH~dlg~~~~~A~~~~~g~~v~l~~~L~dgDvVeIiT 75 (76)
T d1wxqa2 24 FLMKK-GSTPRDLAFKVHTDLGKGFLYAINARTKRRVGEDYELQFNDIVKIVS 75 (76)
T ss_dssp EEEET-TCCHHHHHHHHCHHHHHTEEEEEETTTCSBCCTTCCCCTTEEEEEEE
T ss_pred EEeCC-CCcHHHHHHHHhHHHHhheEEEEECcCCEECCCCcCccCCCEEEEEE
Confidence 55666 999999999999999999999987 999999999999877888887
No 35
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}
Probab=91.49 E-value=0.15 Score=38.92 Aligned_cols=56 Identities=7% Similarity=0.125 Sum_probs=45.4
Q ss_pred EEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 86 Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
|++ +|+.++..+ ++|+.++.+.+.- ....++..+|+++.+ -.++|..+..|+++.+
T Consensus 2 I~v-Ng~~~~~~~-~~tl~~ll~~l~~--~~~~vaV~vN~~ivpk~~~~~~~L~~gD~ieIv~~ 61 (65)
T d1zud21 2 ILF-NDQAMQCAA-GQTVHELLEQLDQ--RQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 61 (65)
T ss_dssp EEE-TTEEECCCT-TCBHHHHHHHHTC--CCTTEEEEETTEECCGGGTTTCBCCTTCEEEEEEC
T ss_pred EEE-CCEEEEcCC-CCcHHHHHHHcCC--CCCcEEEEECCEEcCHHHHhhccCCCCCEEEEEEE
Confidence 556 788888887 8999999998764 345566779999886 5788999999999886
No 36
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}
Probab=83.51 E-value=0.98 Score=34.14 Aligned_cols=57 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred EEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEee----ccccccCCCCeEEeeC
Q 006680 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWD----MTRPLEADCDLKLFTF 145 (635)
Q Consensus 86 Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~D----L~~pl~~d~~lefl~f 145 (635)
|++ +|+.++..+...|+.++.++++- ....+|..+||++.+ -.++|.....||++.|
T Consensus 2 I~v-NG~~~~~~~~~~tl~~LL~~l~~--~~~~vAVevN~~iv~k~~~~~~~L~~gD~IEIv~~ 62 (65)
T d1tygb_ 2 LQL-NGKDVKWKKDTGTIQDLLASYQL--ENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 62 (65)
T ss_dssp EEE-TTEEECCSSSCCBHHHHHHHTTC--TTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred EEE-CCEEEEcCCCcccHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCcccCCCCCEEEEEEe
Confidence 345 88888887745699999998754 456678889999773 4567888889999876
No 37
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}
Probab=82.60 E-value=1.6 Score=32.73 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=42.7
Q ss_pred EEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeec----cccccCCCCeEEeeC
Q 006680 86 ITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDM----TRPLEADCDLKLFTF 145 (635)
Q Consensus 86 Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL----~~pl~~d~~lefl~f 145 (635)
|++ +|+.++. . ++|+.++...++- ....+|.-+|+++.+= +++|..+..||++.+
T Consensus 2 I~v-NGe~~~~-~-~~tl~~LL~~l~~--~~~~vAV~vN~~ivpr~~~~~~~l~~gD~iEIv~~ 60 (63)
T d2cu3a1 2 VWL-NGEPRPL-E-GKTLKEVLEEMGV--ELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (63)
T ss_dssp EEE-TTEEECC-T-TCCHHHHHHHHTB--CGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEE-CCEEEEc-C-CCCHHHHHHHcCC--CCCcEEEEECCEEcCHHHcCcccCCCCCEEEEEEe
Confidence 455 7887776 4 6899999998754 3456888899998844 478888889999886
No 38
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}
Probab=65.42 E-value=2.9 Score=41.28 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=31.9
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecCc-hhHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-QIKDE 361 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~-~~~~E 361 (635)
=++|++|++||+|..+. .+.-||+|.|++.-..+- .+.+.
T Consensus 101 ~~Vf~i~~~FR~E~~~~----~H~~EFtmLE~e~a~~~~~~~m~~ 141 (346)
T d1c0aa3 101 DRYYQIVKCFRDEDLRA----DRQPEFTQIDVETSFMTAPQVREV 141 (346)
T ss_dssp CEEEEEEEEECCCCCBT----TBCSEEEEEEEEEESCCHHHHHHH
T ss_pred CceEEEeeeccccccCc----hhhhHhhhhccccccccHhHhHHH
Confidence 38999999999999887 678999999999755543 24444
No 39
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}
Probab=64.00 E-value=3.4 Score=40.53 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=30.5
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecCc-hhHHH
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRES-QIKDE 361 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~-~~~~E 361 (635)
=++|++|++||.|..+. -+..||+|.|++.-..+- .+-++
T Consensus 92 ~~vf~i~p~FR~E~~~~----rHl~EFtmlE~e~a~~~~~d~m~~ 132 (342)
T d1e1oa2 92 ERVFEINRNFRNEGISV----RHNPEFTMMELYMAYADYHDLIEL 132 (342)
T ss_dssp CEEEEEEEEECCCCCCC-----CCSEEEEEEEEEESCCHHHHHHH
T ss_pred cceeeeccccccccccc----cchHHHHHHHHHHHhhhhhhHHHh
Confidence 48999999999987765 578999999999866542 24444
No 40
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}
Probab=59.20 E-value=4.5 Score=31.49 Aligned_cols=45 Identities=18% Similarity=0.162 Sum_probs=34.6
Q ss_pred CCCHHHHHhhhcccc-------------ccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSL-------------AANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~-------------~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++|+.|+.+.+...+ ..+.+..-|||+..+.+.+|..+++|-|+-
T Consensus 28 ~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d~~L~~gDevai~P 85 (88)
T d1vjka_ 28 GARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWDEELKDGDVVGVFP 85 (88)
T ss_dssp TCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTTCBCCTTCEEEEES
T ss_pred CCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCCcCcCCCCEEEEeC
Confidence 788999887765432 124566778999999999999999988763
No 41
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}
Probab=54.10 E-value=6.2 Score=38.93 Aligned_cols=34 Identities=26% Similarity=0.186 Sum_probs=29.8
Q ss_pred eEEeeeccccccccCCCCcCceeeceeeecCEEEEecC
Q 006680 318 LRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE 355 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~ 355 (635)
=++|++|++||+|.++. .+.-||+|.|++.-..+
T Consensus 109 ~~Vf~i~~~FRaE~~~t----~H~~EFtmLE~e~~~~~ 142 (356)
T d1l0wa3 109 DRYFQIARCFRDEDLRA----DRQPDFTQLDLEMSFVE 142 (356)
T ss_dssp SEEEEEEEEECCCCCCS----SCCSEEEEEEEEEESCC
T ss_pred CcEEEEeccccccccCC----cchhhhhHHHHhhhHHH
Confidence 48999999999999987 56789999999987665
No 42
>d1ryja_ d.15.3.2 (A:) Hypothetical protein MTH1743 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=53.54 E-value=23 Score=26.28 Aligned_cols=59 Identities=8% Similarity=0.053 Sum_probs=44.0
Q ss_pred eEEEeCCCcEEEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 84 IKITLPDGSVKEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 84 I~Itl~dg~~~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
+++...|++.....+-.++..|+.+... .+...|+.+-||+++--...+.++..++++.
T Consensus 7 ftlI~kd~~k~~E~~~p~~IkDiL~~lE--ipieTvVvK~NG~~Vieeeei~dgDeieiI~ 65 (70)
T d1ryja_ 7 FTVITDDGKKILESGAPRRIKDVLGELE--IPIETVVVKKNGQIVIDEEEIFDGDIIEVIR 65 (70)
T ss_dssp EEEEETTEEEEEEESSCCBHHHHHHHTT--CCTTTEEEEETTEECCTTSBCCTTCEEEEEE
T ss_pred EEEEecCchhhhhcCCChhHHHHhcccc--ccceEEEEecCCcEEechhhccCCCEEEEEE
Confidence 4555566654333444788999988764 4567889999999998888888888898875
No 43
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=50.23 E-value=4.5 Score=30.71 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=39.8
Q ss_pred EEeeccCCCHHHHHhhhccccccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 94 KEGKRWETSPMDIAQGISKSLAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 94 ~~~~~~~tTp~diak~is~~~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++... ++|..|+.+.+. +....+++++||.+..=+.++.++..++++.
T Consensus 16 iE~~~-g~~v~dvL~~~g--l~~e~~vv~~nG~vv~eDe~v~DGD~vei~P 63 (68)
T d1rwsa_ 16 IEWRE-GMKVRDILRAVG--FNTESAIAKVNGKVVLEDDEVKDGDFVEVIP 63 (68)
T ss_dssp CCCCS-SCCHHHHHHTTT--CSSCSSCEEETTEEECSSSCCCSSCCCBCSC
T ss_pred EEecC-CcCHHHHHHHcC--CCcceEEEEECCEEecCCcccCCCCEEEEEE
Confidence 44455 999999999875 5667889999999999999999988887654
No 44
>d1j6xa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Helicobacter pylori [TaxId: 210]}
Probab=49.93 E-value=22 Score=30.86 Aligned_cols=59 Identities=14% Similarity=0.235 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhHHHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDHFKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~edl~~IE~~m~eiI 213 (635)
..--||+-|+++.-+++..+.-+-+|| ++=-.|||.-+. +..=+++-++.+++.|+.+.
T Consensus 51 ~~~lHTlEHL~At~lRn~~d~iI~~gP-MGCrTGFYli~~--g~~~~~~i~~~~~~~l~~i~ 109 (151)
T d1j6xa_ 51 MPSLHSLEHLVAEIIRNHANYVVDWSP-MGCQTGFYLTVL--NHDNYTEILEVLEKTMQDVL 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCEEEEEE-CTTSSEEEEEEE--SCCCHHHHHHHHHHHHHHHT
T ss_pred CcchhHHHHHHHHHHhhCCCCeEEECC-CccccccEEEEe--cCCCHHHHHHHHHHHHHHHH
Confidence 344899999999999997765555565 332269987774 22334666778888888776
No 45
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}
Probab=48.86 E-value=8.7 Score=36.65 Aligned_cols=55 Identities=18% Similarity=0.097 Sum_probs=41.5
Q ss_pred cceEEeeeccccccccCCCCcCceeeceeeecCEEEEecCchhHHHHHHHHHHHHHHHHHhCC
Q 006680 316 LPLRLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRESQIKDEVRGVLEFIDYAYRIFGF 378 (635)
Q Consensus 316 lPlrv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~~~~~~E~~~~l~~~~~~~~~~G~ 378 (635)
.|+++...|.+||.+..-+ ..+.+|+|.|.=+....-.. ++ +...+..+++.++.
T Consensus 108 ~p~~~~~~g~VyRrd~iD~----tH~p~FhQ~eg~~vd~~~~~-~~---Lk~~l~~~~~~~f~ 162 (266)
T d1jjca_ 108 PPFRIVVPGRVFRFEQTDA----THEAVFHQLEGLVVGEGIAM-AH---LKGAIYELAQALFG 162 (266)
T ss_dssp SSEEEEEEEEEECCSCCCS----SCCSEEEEEEEEEEETTCCH-HH---HHHHHHHHHHHHHC
T ss_pred CCceEEecccceecCCCCC----cccccceeeeeeeccccccH-HH---HHHHHHHHHHHhcC
Confidence 4799999999999998666 78999999998777654332 33 55666777776654
No 46
>d1vjea_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Deinococcus radiodurans [TaxId: 1299]}
Probab=40.91 E-value=36 Score=29.39 Aligned_cols=58 Identities=14% Similarity=0.259 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCceEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQYGCKLCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lfg~~L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
..--||+-|+++.-+++..+.-+-+|| ++=-.|||.-+. + ..+.++ ++.+++.|+.+.
T Consensus 46 ~~~~HTlEHL~A~~lRn~~~~iId~sP-MGCrTGFYl~~~--g-~~~~~~i~~~~~~~l~~i~ 104 (149)
T d1vjea_ 46 PAAIHTLEHLLAGYMRDHLEGVVDVSP-MGCRTGMYMAVI--G-EPDEQGVMKAFEAALKDTA 104 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTEEEEEE-CTTSSEEEEEEE--S-SCCHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHhCCCCeEEECC-CccccccEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 345799999999999997755556665 332269988774 2 455655 477777777776
No 47
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=36.24 E-value=20 Score=34.20 Aligned_cols=59 Identities=14% Similarity=0.003 Sum_probs=34.6
Q ss_pred EEeeeccccccccCCCCcCceeeceeeecCEEEEecC-chhHHHHHHHHHHH-HHHHHHhCC
Q 006680 319 RLADFGVLHRNEASGALTGLTRVRRFQQDDAHIFCRE-SQIKDEVRGVLEFI-DYAYRIFGF 378 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiRvREF~Q~d~~if~~~-~~~~~E~~~~l~~~-~~~~~~~G~ 378 (635)
++|++|++||+|.... .+--..-||+|.|++.-..+ +.+-+.+..++..+ ..+.+..+-
T Consensus 89 ~Vf~I~~~FR~E~~~s-~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~~~~~~~~~~~~ 149 (293)
T d1nnha_ 89 KIFVLSPNIRLESRQK-DDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYGLFRKAEEWTGR 149 (293)
T ss_dssp EEEEEEEEECCCCGGG-CSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cceeechhhhcCcccC-CCCccchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 7999999999985432 11125679999999864333 23444444444332 333343443
No 48
>d1fm0d_ d.15.3.1 (D:) Molybdopterin synthase subunit MoaD {Escherichia coli [TaxId: 562]}
Probab=33.92 E-value=39 Score=25.45 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=32.0
Q ss_pred CCCHHHHHhhhccc-------cccceEEEEEcCEEeeccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKS-------LAANALISMVNGVLWDMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~-------~~~~iV~AkVNg~l~DL~~pl~~d~~lefl~ 144 (635)
++|..++...+... +....+..-||++..+.+.+|..+.+|-|+-
T Consensus 25 ~~tv~~l~~~L~~~~~~~~~~l~~~~~~vavn~~~~~~~~~l~~gdevAi~P 76 (81)
T d1fm0d_ 25 FPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFP 76 (81)
T ss_dssp CSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCTTCBCCTTCEEEEEC
T ss_pred CCCHHHHHHHHHHhCchHHHHhcCCcEEEecCceecCCCCCcCCCCEEEEEC
Confidence 45677776665432 2233455668999999999999988888764
No 49
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.77 E-value=23 Score=34.21 Aligned_cols=33 Identities=27% Similarity=0.419 Sum_probs=26.5
Q ss_pred EEeeeccccccccCCCCcCcee-eceeeecCEEEEecC
Q 006680 319 RLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFCRE 355 (635)
Q Consensus 319 rv~~vG~lnR~E~~g~l~gLiR-vREF~Q~d~~if~~~ 355 (635)
++|++|++||+|..+. .| .-||+|.|++.-..+
T Consensus 112 ~vf~I~~~FR~E~~~~----~rH~pEFtmLE~y~a~~d 145 (353)
T d1eova2 112 RVYEIGPVFRAENSNT----HRHMTEFTGLDMEMAFEE 145 (353)
T ss_dssp EEEEEEEEECCCCCCC----TTCCSEEEEEEEEEECSS
T ss_pred cceeechhhhcccccc----ccccchhcccccccccch
Confidence 8999999999998764 33 469999999965544
No 50
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=29.56 E-value=20 Score=30.22 Aligned_cols=28 Identities=14% Similarity=0.167 Sum_probs=23.8
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhcc
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISK 112 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~ 112 (635)
+++|++ ||+.++..+ |+|+++.|+..+.
T Consensus 1 Mvti~I-dG~~v~~~~-G~til~aa~~~gi 28 (126)
T d3c8ya2 1 MKTIII-NGVQFNTDE-DTTILKFARDNNI 28 (126)
T ss_dssp CEEEEE-TTEEEEECC-CCBHHHHHHHTTC
T ss_pred CcEEEE-CCEEEEeCC-CChHHHHHHHcCC
Confidence 478888 899999988 9999999988653
No 51
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Probab=28.83 E-value=36 Score=32.39 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=24.8
Q ss_pred eEEeeeccccccccCCCCcCcee-eceeeecCEEEEe
Q 006680 318 LRLADFGVLHRNEASGALTGLTR-VRRFQQDDAHIFC 353 (635)
Q Consensus 318 lrv~~vG~lnR~E~~g~l~gLiR-vREF~Q~d~~if~ 353 (635)
=++|++|++||+|..+. .| ..||+|.+.+.-.
T Consensus 101 ~~if~i~~~FR~e~~~~----~rh~~Ef~~le~~~~~ 133 (335)
T d1b8aa2 101 DRVYEIAPIFRAEEHNT----TRHLNEAWSIDSEMAF 133 (335)
T ss_dssp CEEEEEEEEECCCSSCC----SSCCSEEEEEEEEEES
T ss_pred hhHHHhhcccccccccc----cccchHHHhhhHHHHH
Confidence 48999999999998875 34 4599998666443
No 52
>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}
Probab=27.51 E-value=22 Score=33.08 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=40.5
Q ss_pred CceEEEEecCCCcHHHHHHHHHHHHHCCCEEEEeCCCCCcCCCCCcccccccceeeeeehhhhhhhcccccccchhhHHH
Q 006680 504 PRQAIVCPVSEKSQPYALQVRDHIYRAGYYVDVDTTDRKIQKKPNSFVHARSTYIEVVFSCWEELVAGINIYPIRVSVRE 583 (635)
Q Consensus 504 p~qv~v~p~~~~~~~~a~~v~~~L~~~G~~v~~d~~~~~l~kk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 583 (635)
|+-++|+.-.........++...|+++|+.+++-.+... + ||... .++
T Consensus 1 p~~l~i~N~~s~~~~~~~~~~~~l~~~g~~~~v~~T~~~-g-------~a~~~------------------------~~~ 48 (295)
T d2bona1 1 PASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEK-G-------DAARY------------------------VEE 48 (295)
T ss_dssp CCEEEEECSSSTTCHHHHHHHHHHHTTTCCEEEEECCST-T-------HHHHH------------------------HHH
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHHCCCEEEEEEcCCc-c-------hHHHH------------------------HHH
Confidence 444444443222334557788999999999998875321 1 11110 677
Q ss_pred HhhcCCcEEEEEccc
Q 006680 584 AQLAQYNFILVVGEE 598 (635)
Q Consensus 584 A~~~~~~~~lvvG~~ 598 (635)
|...++..++++|-+
T Consensus 49 ~~~~~~d~Ivv~GGD 63 (295)
T d2bona1 49 ARKFGVATVIAGGGD 63 (295)
T ss_dssp HHHHTCSEEEEEESH
T ss_pred HHhcCCCEEEEECCC
Confidence 788899999999864
No 53
>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.56 E-value=29 Score=26.86 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=23.1
Q ss_pred CeEEEeCCCcEEEeeccCCCHHHHHhhhcc
Q 006680 83 PIKITLPDGSVKEGKRWETSPMDIAQGISK 112 (635)
Q Consensus 83 ~I~Itl~dg~~~~~~~~~tTp~diak~is~ 112 (635)
+++|++ ||++++.+. ++|++|.|....-
T Consensus 1 Mv~i~i-~g~~~~v~~-g~tll~a~~~~gi 28 (95)
T d2fug33 1 MVRVKV-NDRIVEVPP-GTSVMDAVFHAGY 28 (95)
T ss_dssp CEEEEC-SSCEEEECT-TCBHHHHHHHHTC
T ss_pred CcEEEE-CCEEEEECC-CCcHHHHHHhcCC
Confidence 377887 889999888 9999999977554
No 54
>d1v8ca1 d.15.3.1 (A:1-87) MoaD-related protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=24.32 E-value=34 Score=26.09 Aligned_cols=45 Identities=16% Similarity=0.336 Sum_probs=32.7
Q ss_pred CCCHHHHHhhhccccc------------cceEEEEEcCEEe----eccccccCCCCeEEee
Q 006680 100 ETSPMDIAQGISKSLA------------ANALISMVNGVLW----DMTRPLEADCDLKLFT 144 (635)
Q Consensus 100 ~tTp~diak~is~~~~------------~~iV~AkVNg~l~----DL~~pl~~d~~lefl~ 144 (635)
++|+.|+...+...++ ...+...|||+.+ +++.+|..+.+|.|+.
T Consensus 22 ~~Tv~~ll~~L~~~~p~l~~~l~~~~~~~~~v~i~vng~~i~~~~~~~~~l~~gdeV~i~P 82 (87)
T d1v8ca1 22 GATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQGLSTPLSPGATLDLFP 82 (87)
T ss_dssp CSBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTGGGCBCCTTCEEEEEC
T ss_pred CCCHHHHHHHHHHHCHHHHHHhcccccccceEEEEEcCeeeecccCCcccCCCCCEEEEEC
Confidence 5688888877765432 1235677899876 5899999998888864
No 55
>d1j98a_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Bacillus subtilis [TaxId: 1423]}
Probab=21.83 E-value=1.1e+02 Score=26.32 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHhC--Cc---eEeccccccCCeeEEEEEcCCCCCCHhH-HHHHHHHHHHHh
Q 006680 153 TFWHSSAHILGQAIEQQYG--CK---LCIGPCTTRGEGFYYDAFYGDLGLNPDH-FKSIDSEADKAA 213 (635)
Q Consensus 153 vy~hS~ahlL~~Av~~lfg--~~---L~ig~sl~~~~Gfy~d~~~~~~~it~ed-l~~IE~~m~eiI 213 (635)
.--||+-|+++.-+++... .+ +-+|| ++=-.|||.-+.- ..+.++ ++.+++.++.+.
T Consensus 48 ~~lHTlEHL~At~lRn~~~~~d~~~iI~~gP-MGCrTGFYl~~~g---~~~~~~i~~l~~~~l~~i~ 110 (154)
T d1j98a_ 48 DTIHTLEHLLAFTIRSHAEKYDHFDIIDISP-MGCQTGYYLVVSG---ETTSAEIVDLLEDTMKEAV 110 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSEEEEEEEE-CTTSSEEEEEEEE---CCCHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhCccccCCccEEEeCC-CccccccEEEEEC---CCCHHHHHHHHHHHHHHHh
Confidence 4589999999999999873 22 34454 4322698877752 345555 666777777666
No 56
>d1j6wa_ d.185.1.2 (A:) Autoinducer-2 production protein LuxS {Haemophilus influenzae [TaxId: 727]}
Probab=20.14 E-value=1.2e+02 Score=26.15 Aligned_cols=58 Identities=16% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHh-CC--c-eEeccccccCCeeEEEEEcCCCCCCHhHH-HHHHHHHHHHh
Q 006680 152 DTFWHSSAHILGQAIEQQY-GC--K-LCIGPCTTRGEGFYYDAFYGDLGLNPDHF-KSIDSEADKAA 213 (635)
Q Consensus 152 ~vy~hS~ahlL~~Av~~lf-g~--~-L~ig~sl~~~~Gfy~d~~~~~~~it~edl-~~IE~~m~eiI 213 (635)
..--||+-|+++.-+++.- +. + +-+|| ++=-.|||.-+. + ..+.+++ +.+++.|+.++
T Consensus 48 ~~~lHTlEHL~At~lRnh~~~~~~~iId~gP-MGCrTGFYl~~~--G-~~~~~~i~~~~~~~l~~i~ 110 (161)
T d1j6wa_ 48 PKGIHTLEHLFAGFMRDHLNGDSIEIIDISP-MGCRTGFYMSLI--G-TPNEQKVSEAWLASMQDVL 110 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHCBTTBEEEEEEE-CTTSSEEEEEEE--S-CCCHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHhhhcccCCCceEEEecC-CccccceEEEEe--C-CCCHHHHHHHHHHHHHHHH
Confidence 3457999999999999986 43 3 34454 432269987764 2 4566665 57789898886
No 57
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=20.02 E-value=66 Score=25.21 Aligned_cols=77 Identities=13% Similarity=0.056 Sum_probs=45.2
Q ss_pred EEEeCHHHHHHHhhcCcchhhhcccCCCCCeEEEEEeCCeEeecCCCCCCCCccccceEEeecccceeccCCCCCCccee
Q 006680 219 RIEVTRDQALEMFSDNNFKVEIINDLPADKTITVYRCGPLVDLCRGPHIPNTSFVKGFGCLKASSAYWRGNKDRESLQRV 298 (635)
Q Consensus 219 r~~vsreeAle~F~~~~~K~~LL~~~~~~~~v~vYr~g~~iDlc~GPhVpsTG~Ik~F~L~k~s~g~~L~~p~~~~lqRI 298 (635)
--.+++++|.++....+.-.-|++.-.. -|.|+ ++ +..-|.++.|.|.....|+++....
T Consensus 13 ~g~isR~eAe~lL~~~~~G~FLVR~S~~--------~~~y~-Ls----v~~~~~v~H~~I~~~~~g~~~~~~~------- 72 (107)
T d1qada_ 13 VGSSNRNKAENLLRGKRDGTFLVRESSK--------QGCYA-CS----VVVDGEVKHCVINKTATGYGFAEPY------- 72 (107)
T ss_dssp EEECCHHHHHHHHTTCCTTEEEEEEC-----------CCEE-EE----EEETTEEEEEEEEEETTEEESSTTC-------
T ss_pred CCCCCHHHHHHHHcCCCCCcEEEEecCC--------CCCEE-EE----EEecCCeEEEEEEECCCCeEEcCCC-------
Confidence 4578999999988653322223332100 01121 11 1112568899999998888876432
Q ss_pred eccccCChhhhhhcccccc
Q 006680 299 YGISYPDKKRLKHAFAELP 317 (635)
Q Consensus 299 yG~~fp~~~~L~esyrelP 317 (635)
..|++-..|-+-|+..|
T Consensus 73 --~~F~sl~~LI~~Y~~~~ 89 (107)
T d1qada_ 73 --NLYSSLKELVLHYQHTS 89 (107)
T ss_dssp --CCBSSHHHHHHHHHHSC
T ss_pred --CccCCHHHHHHHHHhCc
Confidence 26888888887776544
Done!