Query 006681
Match_columns 635
No_of_seqs 302 out of 1370
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 12:57:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03059 beta-galactosidase; P 100.0 6E-173 1E-177 1463.4 54.4 587 17-634 7-595 (840)
2 KOG0496 Beta-galactosidase [Ca 100.0 7E-153 1E-157 1258.5 26.4 515 36-634 17-533 (649)
3 PF01301 Glyco_hydro_35: Glyco 100.0 1.8E-90 4E-95 729.0 20.2 296 45-349 1-318 (319)
4 COG1874 LacA Beta-galactosidas 100.0 1.6E-34 3.4E-39 326.6 10.7 293 39-340 1-337 (673)
5 PF02449 Glyco_hydro_42: Beta- 99.8 1.3E-20 2.9E-25 202.3 14.4 264 61-352 3-373 (374)
6 PF02836 Glyco_hydro_2_C: Glyc 99.3 1.5E-10 3.3E-15 120.8 17.7 192 39-271 1-212 (298)
7 PRK10150 beta-D-glucuronidase; 99.0 7E-08 1.5E-12 110.5 24.9 160 37-231 276-449 (604)
8 PF00150 Cellulase: Cellulase 98.8 4.9E-08 1.1E-12 98.9 14.8 161 49-231 4-172 (281)
9 PRK10340 ebgA cryptic beta-D-g 98.8 1.6E-07 3.5E-12 113.6 18.0 258 38-352 319-604 (1021)
10 PRK09525 lacZ beta-D-galactosi 98.7 2.4E-07 5.3E-12 112.0 18.4 148 38-230 335-488 (1027)
11 PF13364 BetaGal_dom4_5: Beta- 98.6 8.4E-08 1.8E-12 87.4 7.1 87 465-588 21-110 (111)
12 COG3250 LacZ Beta-galactosidas 98.6 1.3E-06 2.7E-11 103.1 17.1 120 37-198 284-409 (808)
13 PF02837 Glyco_hydro_2_N: Glyc 98.2 1.5E-05 3.3E-10 75.9 12.2 104 470-609 59-164 (167)
14 smart00633 Glyco_10 Glycosyl h 98.1 1.1E-05 2.3E-10 83.1 9.0 117 91-232 3-126 (254)
15 PLN02705 beta-amylase 97.9 3.3E-05 7.2E-10 87.3 8.8 112 67-192 267-414 (681)
16 PLN02905 beta-amylase 97.9 4.3E-05 9.2E-10 86.7 9.0 111 68-192 286-432 (702)
17 PLN02801 beta-amylase 97.9 4.4E-05 9.5E-10 85.1 9.0 81 66-152 35-127 (517)
18 PLN02161 beta-amylase 97.9 4.9E-05 1.1E-09 84.7 9.3 81 68-152 117-207 (531)
19 PLN00197 beta-amylase; Provisi 97.9 4.5E-05 9.7E-10 85.6 9.0 81 66-152 125-217 (573)
20 PF03198 Glyco_hydro_72: Gluca 97.8 0.00026 5.6E-09 75.3 13.9 128 34-199 6-148 (314)
21 PLN02803 beta-amylase 97.8 5.9E-05 1.3E-09 84.5 9.0 79 68-152 107-197 (548)
22 TIGR03356 BGL beta-galactosida 97.8 7.6E-05 1.6E-09 82.8 8.7 97 68-176 54-151 (427)
23 PF13204 DUF4038: Protein of u 97.5 0.0019 4.1E-08 68.2 14.8 224 43-297 2-274 (289)
24 PF01373 Glyco_hydro_14: Glyco 97.2 0.00054 1.2E-08 75.2 6.2 114 69-192 17-152 (402)
25 PF00331 Glyco_hydro_10: Glyco 96.9 0.0014 3.1E-08 70.1 5.7 157 55-233 11-180 (320)
26 PF00232 Glyco_hydro_1: Glycos 96.8 0.00078 1.7E-08 75.2 3.0 96 68-175 58-155 (455)
27 COG2730 BglC Endoglucanase [Ca 96.6 0.0077 1.7E-07 66.5 9.3 115 66-198 66-193 (407)
28 PF07745 Glyco_hydro_53: Glyco 96.6 0.01 2.2E-07 64.1 9.8 104 71-198 27-137 (332)
29 PRK15014 6-phospho-beta-glucos 96.5 0.0037 8.1E-08 70.5 6.4 95 69-175 70-167 (477)
30 COG3693 XynA Beta-1,4-xylanase 96.5 0.018 3.8E-07 61.7 10.9 133 77-232 55-194 (345)
31 PRK10340 ebgA cryptic beta-D-g 96.3 0.014 3E-07 71.6 10.0 93 481-612 111-207 (1021)
32 PRK09852 cryptic 6-phospho-bet 96.3 0.0057 1.2E-07 69.0 5.9 100 68-175 71-173 (474)
33 PRK09525 lacZ beta-D-galactosi 96.2 0.017 3.7E-07 70.8 9.4 93 480-611 121-218 (1027)
34 PRK10150 beta-D-glucuronidase; 96.1 0.024 5.2E-07 65.5 9.7 99 477-612 63-180 (604)
35 PLN02998 beta-glucosidase 96.1 0.0085 1.8E-07 68.0 5.8 100 68-175 82-183 (497)
36 PF02055 Glyco_hydro_30: O-Gly 96.0 0.052 1.1E-06 61.7 11.7 334 51-413 74-491 (496)
37 PRK13511 6-phospho-beta-galact 96.0 0.011 2.4E-07 66.6 6.3 99 68-175 54-153 (469)
38 PRK09593 arb 6-phospho-beta-gl 96.0 0.012 2.7E-07 66.4 6.7 100 68-175 73-175 (478)
39 PF14488 DUF4434: Domain of un 96.0 0.13 2.9E-06 50.3 12.9 64 63-128 15-86 (166)
40 smart00812 Alpha_L_fucos Alpha 95.9 2.9 6.3E-05 46.3 24.6 248 62-364 78-344 (384)
41 PLN02814 beta-glucosidase 95.9 0.01 2.2E-07 67.4 5.8 100 68-175 77-178 (504)
42 PRK09589 celA 6-phospho-beta-g 95.9 0.014 2.9E-07 66.0 6.2 100 68-175 67-169 (476)
43 TIGR01233 lacG 6-phospho-beta- 95.8 0.015 3.3E-07 65.5 6.4 96 68-175 53-149 (467)
44 PLN02849 beta-glucosidase 95.7 0.017 3.8E-07 65.6 6.1 100 68-175 79-180 (503)
45 COG3867 Arabinogalactan endo-1 95.5 0.13 2.8E-06 54.9 11.3 110 70-198 65-183 (403)
46 PF14871 GHL6: Hypothetical gl 94.8 0.18 4E-06 47.7 9.1 99 72-175 4-124 (132)
47 PRK09936 hypothetical protein; 94.4 0.86 1.9E-05 48.6 13.8 58 63-126 33-91 (296)
48 COG2723 BglB Beta-glucosidase/ 94.0 0.096 2.1E-06 58.9 6.3 100 68-175 59-161 (460)
49 TIGR01515 branching_enzym alph 92.6 2 4.3E-05 50.3 14.3 69 58-127 142-226 (613)
50 TIGR00542 hxl6Piso_put hexulos 91.8 3.6 7.7E-05 42.6 13.8 98 67-190 15-113 (279)
51 KOG0496 Beta-galactosidase [Ca 91.6 2.9 6.3E-05 48.9 13.8 83 479-601 557-640 (649)
52 PF02638 DUF187: Glycosyl hydr 91.0 0.81 1.8E-05 49.1 8.3 119 66-194 17-162 (311)
53 smart00642 Aamy Alpha-amylase 90.0 1 2.2E-05 44.0 7.2 65 70-134 21-97 (166)
54 PRK13210 putative L-xylulose 5 88.4 5.3 0.00012 41.1 11.7 132 68-225 16-149 (284)
55 KOG2230 Predicted beta-mannosi 88.4 5 0.00011 46.5 12.0 149 43-231 327-493 (867)
56 PRK05402 glycogen branching en 88.1 9.6 0.00021 45.6 15.0 53 75-127 273-335 (726)
57 PF05913 DUF871: Bacterial pro 86.8 1.2 2.6E-05 48.9 5.9 70 56-131 2-71 (357)
58 COG3934 Endo-beta-mannanase [C 86.3 0.67 1.5E-05 52.3 3.8 157 45-219 3-168 (587)
59 PRK14706 glycogen branching en 86.3 15 0.00032 43.5 15.0 54 74-127 174-237 (639)
60 PF01261 AP_endonuc_2: Xylose 85.7 2.3 5E-05 40.8 6.8 124 74-224 1-127 (213)
61 PRK09441 cytoplasmic alpha-amy 84.9 1.8 3.8E-05 49.0 6.3 61 67-127 18-101 (479)
62 cd00019 AP2Ec AP endonuclease 84.8 12 0.00025 38.8 11.9 54 68-125 10-64 (279)
63 COG1649 Uncharacterized protei 83.5 7.7 0.00017 43.6 10.4 123 65-197 61-210 (418)
64 TIGR01531 glyc_debranch glycog 83.2 5.6 0.00012 50.5 10.0 111 45-161 104-234 (1464)
65 PRK12568 glycogen branching en 82.7 24 0.00052 42.5 14.6 55 73-129 275-341 (730)
66 PRK01060 endonuclease IV; Prov 82.7 12 0.00025 38.7 10.9 93 70-191 14-109 (281)
67 PF00128 Alpha-amylase: Alpha 82.6 2 4.3E-05 43.7 5.1 58 72-129 8-74 (316)
68 PF13200 DUF4015: Putative gly 82.6 4.8 0.0001 43.6 8.1 112 66-178 11-137 (316)
69 PF14307 Glyco_tran_WbsX: Glyc 82.0 18 0.00039 39.3 12.4 139 65-232 55-198 (345)
70 TIGR02631 xylA_Arthro xylose i 80.8 27 0.00059 38.7 13.4 94 66-175 30-125 (382)
71 PRK13209 L-xylulose 5-phosphat 79.1 36 0.00079 35.1 13.1 126 68-225 21-154 (283)
72 PF08531 Bac_rhamnosid_N: Alph 78.8 4.4 9.4E-05 39.7 5.8 59 500-584 4-64 (172)
73 PRK13398 3-deoxy-7-phosphohept 78.5 12 0.00025 39.6 9.2 81 37-127 14-98 (266)
74 PF02679 ComA: (2R)-phospho-3- 78.2 5.2 0.00011 41.9 6.4 52 67-128 83-134 (244)
75 PF13199 Glyco_hydro_66: Glyco 78.0 53 0.0012 38.4 15.0 80 67-146 117-211 (559)
76 PRK14705 glycogen branching en 76.2 52 0.0011 41.9 15.2 55 73-127 771-835 (1224)
77 PF01229 Glyco_hydro_39: Glyco 76.0 8.6 0.00019 43.7 8.0 69 57-128 28-105 (486)
78 TIGR03234 OH-pyruv-isom hydrox 76.0 33 0.00072 34.9 11.6 43 69-125 15-57 (254)
79 PRK09856 fructoselysine 3-epim 75.3 48 0.001 34.0 12.6 52 68-124 13-64 (275)
80 PRK09997 hydroxypyruvate isome 75.1 47 0.001 34.0 12.4 49 60-125 10-58 (258)
81 PRK12313 glycogen branching en 72.3 8.6 0.00019 45.2 7.0 54 74-127 177-240 (633)
82 PLN02447 1,4-alpha-glucan-bran 71.1 9 0.0002 46.1 6.8 61 68-129 251-322 (758)
83 PRK14582 pgaB outer membrane N 71.0 27 0.00059 41.6 10.6 110 68-195 334-467 (671)
84 PLN02361 alpha-amylase 70.6 16 0.00034 40.9 8.2 57 71-127 32-96 (401)
85 PF01791 DeoC: DeoC/LacD famil 70.0 2.2 4.9E-05 43.5 1.4 57 71-132 79-135 (236)
86 cd06593 GH31_xylosidase_YicI Y 68.8 8.3 0.00018 40.9 5.4 69 65-133 21-92 (308)
87 PRK10785 maltodextrin glucosid 68.7 11 0.00024 44.0 6.9 57 71-127 182-246 (598)
88 TIGR02403 trehalose_treC alpha 68.0 9.1 0.0002 44.2 5.9 57 69-127 28-95 (543)
89 PLN00196 alpha-amylase; Provis 66.2 34 0.00074 38.6 9.8 57 71-127 47-112 (428)
90 TIGR02104 pulA_typeI pullulana 66.1 12 0.00027 43.7 6.5 55 72-127 168-249 (605)
91 PLN02960 alpha-amylase 66.0 14 0.0003 45.1 7.0 56 72-127 421-486 (897)
92 smart00518 AP2Ec AP endonuclea 65.9 62 0.0013 33.2 11.0 92 70-191 12-104 (273)
93 cd04908 ACT_Bt0572_1 N-termina 65.8 16 0.00035 29.6 5.4 55 67-125 12-66 (66)
94 PRK09505 malS alpha-amylase; R 65.3 15 0.00032 43.9 7.0 58 70-127 232-312 (683)
95 TIGR02402 trehalose_TreZ malto 65.3 12 0.00026 43.4 6.1 53 72-127 115-180 (542)
96 TIGR02456 treS_nterm trehalose 64.7 16 0.00035 42.1 7.0 57 68-126 28-95 (539)
97 PRK10933 trehalose-6-phosphate 63.3 17 0.00037 42.1 6.9 55 70-127 35-101 (551)
98 TIGR03849 arch_ComA phosphosul 62.9 17 0.00037 38.0 6.1 52 68-129 71-122 (237)
99 cd06592 GH31_glucosidase_KIAA1 62.4 21 0.00046 38.0 7.0 69 63-134 25-97 (303)
100 PF08308 PEGA: PEGA domain; I 62.3 23 0.0005 29.1 5.8 24 503-526 3-26 (71)
101 TIGR00677 fadh2_euk methylenet 61.1 38 0.00082 36.0 8.5 109 54-176 130-251 (281)
102 PF02065 Melibiase: Melibiase; 59.6 99 0.0022 34.6 11.8 89 61-149 51-148 (394)
103 TIGR02100 glgX_debranch glycog 59.4 54 0.0012 39.3 10.2 54 74-127 190-265 (688)
104 COG0296 GlgB 1,4-alpha-glucan 59.2 18 0.00038 42.8 6.1 56 67-126 164-233 (628)
105 PF04914 DltD_C: DltD C-termin 58.7 18 0.00039 34.4 5.0 51 107-176 36-87 (130)
106 PRK08673 3-deoxy-7-phosphohept 58.4 39 0.00084 37.0 8.2 81 37-127 80-164 (335)
107 PRK14510 putative bifunctional 58.2 18 0.00039 45.9 6.3 56 72-127 191-267 (1221)
108 PF14701 hDGE_amylase: glucano 56.9 58 0.0013 36.8 9.4 92 66-163 20-128 (423)
109 cd06545 GH18_3CO4_chitinase Th 56.6 51 0.0011 33.9 8.4 90 98-219 36-126 (253)
110 TIGR02401 trehalose_TreY malto 56.0 30 0.00065 42.2 7.4 64 66-129 14-87 (825)
111 PF01261 AP_endonuc_2: Xylose 54.9 52 0.0011 31.4 7.7 104 68-199 27-137 (213)
112 PF12876 Cellulase-like: Sugar 54.9 29 0.00063 30.1 5.4 47 184-230 8-63 (88)
113 COG1306 Uncharacterized conser 52.8 24 0.00051 38.3 5.2 59 66-127 75-144 (400)
114 cd06589 GH31 The enzymes of gl 52.6 39 0.00084 35.2 6.8 65 66-131 22-90 (265)
115 PF03659 Glyco_hydro_71: Glyco 52.4 55 0.0012 36.5 8.3 54 65-127 14-67 (386)
116 PRK14511 maltooligosyl trehalo 52.3 38 0.00082 41.6 7.5 62 65-130 17-92 (879)
117 PRK14507 putative bifunctional 51.7 35 0.00076 44.7 7.4 61 65-129 755-829 (1693)
118 PF02228 Gag_p19: Major core p 51.3 15 0.00032 32.3 2.9 37 65-118 19-55 (92)
119 cd06416 GH25_Lys1-like Lys-1 i 50.5 37 0.0008 33.6 6.0 88 57-147 55-157 (196)
120 PRK12677 xylose isomerase; Pro 49.4 1.8E+02 0.0039 32.4 11.7 89 69-175 32-124 (384)
121 KOG0626 Beta-glucosidase, lact 48.9 45 0.00097 38.6 7.0 113 69-191 92-208 (524)
122 PF01120 Alpha_L_fucos: Alpha- 47.8 4E+02 0.0088 29.0 20.2 56 277-357 288-344 (346)
123 cd00311 TIM Triosephosphate is 47.6 44 0.00095 34.9 6.2 50 73-128 76-125 (242)
124 cd02742 GH20_hexosaminidase Be 47.1 38 0.00083 36.1 5.9 60 65-127 13-92 (303)
125 PF03422 CBM_6: Carbohydrate b 46.7 1.1E+02 0.0025 27.3 8.2 76 477-585 30-110 (125)
126 cd06591 GH31_xylosidase_XylS X 46.2 31 0.00068 37.0 5.1 66 66-132 22-91 (319)
127 cd06603 GH31_GANC_GANAB_alpha 45.8 34 0.00074 37.0 5.4 68 66-134 22-91 (339)
128 COG3589 Uncharacterized conser 45.7 53 0.0011 36.2 6.6 72 56-134 4-76 (360)
129 PF14587 Glyco_hydr_30_2: O-Gl 45.0 2.6E+02 0.0056 31.5 11.9 119 96-231 93-226 (384)
130 cd06547 GH85_ENGase Endo-beta- 44.9 45 0.00098 36.5 6.1 107 84-221 32-138 (339)
131 PRK00042 tpiA triosephosphate 44.2 54 0.0012 34.4 6.3 50 73-128 78-127 (250)
132 PRK03705 glycogen debranching 43.7 40 0.00086 40.2 5.8 55 73-127 184-262 (658)
133 PF11941 DUF3459: Domain of un 43.6 65 0.0014 27.3 5.8 38 377-415 38-89 (89)
134 cd06602 GH31_MGAM_SI_GAA This 43.5 38 0.00083 36.7 5.3 74 60-134 13-93 (339)
135 cd06599 GH31_glycosidase_Aec37 43.4 47 0.001 35.6 5.9 66 67-132 28-98 (317)
136 cd06598 GH31_transferase_CtsZ 42.8 40 0.00088 36.1 5.3 68 66-133 22-96 (317)
137 TIGR02103 pullul_strch alpha-1 42.8 48 0.001 40.9 6.4 21 107-127 404-424 (898)
138 PRK15492 triosephosphate isome 42.1 60 0.0013 34.3 6.3 50 73-128 86-135 (260)
139 cd06565 GH20_GcnA-like Glycosy 42.0 1.4E+02 0.003 32.0 9.1 66 66-134 15-87 (301)
140 cd03789 GT1_LPS_heptosyltransf 41.9 36 0.00077 35.1 4.6 79 52-133 123-213 (279)
141 cd06568 GH20_SpHex_like A subg 41.7 77 0.0017 34.4 7.2 75 43-127 3-95 (329)
142 PF01055 Glyco_hydro_31: Glyco 41.5 68 0.0015 35.6 7.0 70 66-136 41-112 (441)
143 PF01075 Glyco_transf_9: Glyco 41.3 18 0.00039 36.3 2.2 76 51-129 106-194 (247)
144 TIGR02102 pullulan_Gpos pullul 41.0 55 0.0012 41.4 6.6 21 107-127 555-575 (1111)
145 PF08533 Glyco_hydro_42C: Beta 40.9 24 0.00051 28.4 2.4 37 378-415 8-56 (58)
146 PRK12858 tagatose 1,6-diphosph 40.7 42 0.00092 36.8 5.1 65 60-127 99-163 (340)
147 PRK12331 oxaloacetate decarbox 40.5 64 0.0014 36.7 6.6 56 60-127 88-143 (448)
148 PF01487 DHquinase_I: Type I 3 40.4 74 0.0016 32.1 6.5 65 56-129 116-184 (224)
149 KOG3625 Alpha amylase [Carbohy 40.0 39 0.00084 41.6 4.9 82 66-156 140-241 (1521)
150 PRK09856 fructoselysine 3-epim 40.0 44 0.00095 34.3 4.9 59 68-130 90-153 (275)
151 PRK14567 triosephosphate isome 39.9 68 0.0015 33.8 6.3 49 74-128 78-126 (253)
152 PRK09267 flavodoxin FldA; Vali 39.9 2.3E+02 0.005 27.0 9.6 74 48-124 44-117 (169)
153 PRK09989 hypothetical protein; 39.1 57 0.0012 33.4 5.5 43 69-125 16-58 (258)
154 cd06600 GH31_MGAM-like This fa 39.0 50 0.0011 35.5 5.3 67 66-133 22-90 (317)
155 PF06832 BiPBP_C: Penicillin-B 38.9 1.1E+02 0.0025 26.3 6.6 22 501-522 33-54 (89)
156 cd06597 GH31_transferase_CtsY 38.9 62 0.0014 35.2 6.0 73 60-132 13-110 (340)
157 TIGR00419 tim triosephosphate 38.5 69 0.0015 32.7 5.9 45 73-127 73-117 (205)
158 PTZ00333 triosephosphate isome 38.5 73 0.0016 33.6 6.2 49 74-128 82-130 (255)
159 TIGR00433 bioB biotin syntheta 38.2 56 0.0012 34.1 5.4 53 71-126 123-177 (296)
160 PRK10422 lipopolysaccharide co 38.1 58 0.0013 34.9 5.6 73 54-129 187-273 (352)
161 PRK09432 metF 5,10-methylenete 37.9 77 0.0017 34.0 6.4 89 73-176 168-266 (296)
162 PRK09875 putative hydrolase; P 37.8 1.6E+02 0.0035 31.5 8.8 89 38-146 7-95 (292)
163 PRK14566 triosephosphate isome 37.6 79 0.0017 33.5 6.3 50 73-128 87-136 (260)
164 cd06831 PLPDE_III_ODC_like_AZI 37.0 81 0.0017 35.0 6.6 66 65-142 147-215 (394)
165 cd06418 GH25_BacA-like BacA is 37.0 1.9E+02 0.0041 29.6 8.8 91 66-178 50-141 (212)
166 smart00481 POLIIIAc DNA polyme 37.0 97 0.0021 25.0 5.6 45 68-125 15-59 (67)
167 PLN03059 beta-galactosidase; P 36.7 43 0.00094 40.9 4.7 87 480-585 620-714 (840)
168 PRK10964 ADP-heptose:LPS hepto 36.3 53 0.0011 34.7 4.9 76 51-129 178-264 (322)
169 cd06601 GH31_lyase_GLase GLase 36.2 1.8E+02 0.0039 31.7 9.0 72 60-132 13-89 (332)
170 cd06570 GH20_chitobiase-like_1 36.2 1.1E+02 0.0024 33.1 7.3 60 65-127 15-88 (311)
171 cd06604 GH31_glucosidase_II_Ma 36.0 63 0.0014 34.9 5.5 74 60-134 13-91 (339)
172 KOG1412 Aspartate aminotransfe 35.7 1.3E+02 0.0028 33.2 7.5 118 66-231 131-249 (410)
173 PRK08645 bifunctional homocyst 34.9 1.5E+02 0.0032 35.1 8.6 110 51-175 461-578 (612)
174 KOG0622 Ornithine decarboxylas 34.9 69 0.0015 36.2 5.5 68 65-142 190-258 (448)
175 cd06595 GH31_xylosidase_XylS-l 34.5 74 0.0016 33.7 5.6 66 66-131 23-98 (292)
176 PRK13209 L-xylulose 5-phosphat 34.5 1.2E+02 0.0027 31.1 7.2 103 65-197 54-161 (283)
177 PF14683 CBM-like: Polysacchar 34.3 76 0.0016 31.3 5.3 23 500-522 78-104 (167)
178 PLN02540 methylenetetrahydrofo 34.2 80 0.0017 37.1 6.2 89 74-176 162-259 (565)
179 PF00121 TIM: Triosephosphate 34.0 38 0.00082 35.4 3.3 51 72-128 75-125 (244)
180 COG1735 Php Predicted metal-de 33.6 1.6E+02 0.0034 32.2 7.8 72 73-175 53-124 (316)
181 TIGR02201 heptsyl_trn_III lipo 33.5 79 0.0017 33.7 5.7 65 62-129 194-271 (344)
182 PLN02561 triosephosphate isome 33.4 98 0.0021 32.7 6.2 50 73-128 80-129 (253)
183 cd01299 Met_dep_hydrolase_A Me 33.4 94 0.002 32.8 6.2 61 66-127 118-180 (342)
184 cd07937 DRE_TIM_PC_TC_5S Pyruv 33.3 1.1E+02 0.0024 32.2 6.7 49 65-125 88-136 (275)
185 TIGR00676 fadh2 5,10-methylene 33.2 1.7E+02 0.0038 30.7 8.1 109 53-175 125-246 (272)
186 PRK14040 oxaloacetate decarbox 33.2 75 0.0016 37.4 5.9 53 60-124 89-141 (593)
187 PF14606 Lipase_GDSL_3: GDSL-l 32.8 3.6E+02 0.0078 27.1 9.7 124 51-221 2-131 (178)
188 PF03102 NeuB: NeuB family; I 32.4 58 0.0013 34.0 4.3 64 65-128 53-121 (241)
189 PRK13210 putative L-xylulose 5 32.3 76 0.0016 32.6 5.2 60 68-128 94-154 (284)
190 PRK06703 flavodoxin; Provision 31.5 2.5E+02 0.0053 26.3 8.1 103 48-175 46-148 (151)
191 PRK02412 aroD 3-dehydroquinate 31.4 1.2E+02 0.0025 31.7 6.4 35 56-90 138-174 (253)
192 PF11008 DUF2846: Protein of u 30.7 92 0.002 28.4 4.9 14 510-523 40-53 (117)
193 cd02871 GH18_chitinase_D-like 30.7 2.4E+02 0.0052 30.2 8.8 87 107-222 60-146 (312)
194 PF00728 Glyco_hydro_20: Glyco 30.5 65 0.0014 34.3 4.5 63 65-127 15-93 (351)
195 KOG4039 Serine/threonine kinas 30.2 1.1E+02 0.0024 31.3 5.6 73 62-139 103-180 (238)
196 PLN02877 alpha-amylase/limit d 29.9 1.1E+02 0.0023 38.3 6.5 21 107-127 466-486 (970)
197 cd04740 DHOD_1B_like Dihydroor 29.7 1.4E+02 0.003 31.3 6.7 60 66-129 100-163 (296)
198 cd02875 GH18_chitobiase Chitob 29.7 5.7E+02 0.012 28.0 11.6 78 110-220 67-144 (358)
199 cd06563 GH20_chitobiase-like T 29.7 2E+02 0.0043 31.5 8.1 60 65-127 15-106 (357)
200 cd00537 MTHFR Methylenetetrahy 29.6 1.8E+02 0.004 30.3 7.5 90 73-176 152-250 (274)
201 PTZ00372 endonuclease 4-like p 29.4 2.3E+02 0.005 32.1 8.6 83 44-128 149-240 (413)
202 TIGR01698 PUNP purine nucleoti 29.3 76 0.0016 33.2 4.5 40 47-86 47-87 (237)
203 COG0366 AmyA Glycosidases [Car 28.7 88 0.0019 34.6 5.3 56 72-127 33-97 (505)
204 PRK09997 hydroxypyruvate isome 28.5 91 0.002 31.9 5.0 60 68-127 85-144 (258)
205 COG3320 Putative dehydrogenase 28.2 39 0.00085 37.7 2.3 37 109-146 175-214 (382)
206 PLN02429 triosephosphate isome 27.9 1.4E+02 0.003 32.6 6.3 50 73-128 139-188 (315)
207 PRK12595 bifunctional 3-deoxy- 27.8 3.1E+02 0.0067 30.4 9.2 83 37-127 105-189 (360)
208 PF08924 DUF1906: Domain of un 27.6 1.9E+02 0.0041 27.5 6.6 92 66-177 36-128 (136)
209 TIGR02455 TreS_stutzeri trehal 27.6 1.5E+02 0.0033 35.5 7.0 75 66-144 76-175 (688)
210 COG0149 TpiA Triosephosphate i 27.5 1.4E+02 0.003 31.6 6.1 50 73-128 80-129 (251)
211 cd00502 DHQase_I Type I 3-dehy 27.2 1.6E+02 0.0035 29.7 6.5 54 56-118 116-171 (225)
212 TIGR02193 heptsyl_trn_I lipopo 27.2 1.1E+02 0.0024 32.1 5.4 76 50-129 179-265 (319)
213 TIGR03646 YtoQ_fam YtoQ family 27.0 69 0.0015 30.9 3.4 29 53-87 2-31 (144)
214 PLN02784 alpha-amylase 26.9 1.6E+02 0.0035 36.3 7.3 57 71-127 524-588 (894)
215 PLN02607 1-aminocyclopropane-1 26.8 2.3E+02 0.005 31.9 8.2 59 64-126 181-239 (447)
216 PRK10076 pyruvate formate lyas 26.4 4.3E+02 0.0094 26.9 9.4 125 68-225 54-209 (213)
217 cd06562 GH20_HexA_HexB-like Be 25.9 2.8E+02 0.0061 30.2 8.4 75 43-127 3-90 (348)
218 COG1523 PulA Type II secretory 25.6 1.2E+02 0.0026 36.5 5.9 55 73-127 205-285 (697)
219 cd00958 DhnA Class I fructose- 25.5 82 0.0018 31.9 4.0 63 59-127 67-129 (235)
220 PF12733 Cadherin-like: Cadher 25.4 1.7E+02 0.0037 24.9 5.4 20 503-522 28-47 (88)
221 PF11790 Glyco_hydro_cc: Glyco 25.1 1.2E+02 0.0027 31.1 5.2 99 68-176 90-200 (239)
222 COG1891 Uncharacterized protei 24.9 30 0.00065 34.9 0.6 67 52-126 115-186 (235)
223 PF05763 DUF835: Protein of un 24.8 2.6E+02 0.0055 26.7 6.9 105 99-224 1-113 (136)
224 PF10566 Glyco_hydro_97: Glyco 24.7 2.1E+02 0.0046 30.6 6.9 113 65-188 29-160 (273)
225 cd07944 DRE_TIM_HOA_like 4-hyd 24.6 1.5E+02 0.0034 31.0 5.9 65 64-128 16-81 (266)
226 PF14307 Glyco_tran_WbsX: Glyc 24.5 1.4E+02 0.0031 32.4 5.9 44 42-87 150-194 (345)
227 TIGR03128 RuMP_HxlA 3-hexulose 24.3 1.7E+02 0.0038 28.7 6.0 41 73-126 68-108 (206)
228 TIGR00542 hxl6Piso_put hexulos 24.1 1.3E+02 0.0029 31.0 5.3 55 69-127 95-153 (279)
229 TIGR01361 DAHP_synth_Bsub phos 24.0 2.2E+02 0.0048 29.9 6.9 81 37-127 12-96 (260)
230 PF07755 DUF1611: Protein of u 24.0 45 0.00098 36.1 1.8 48 66-127 47-95 (301)
231 cd07944 DRE_TIM_HOA_like 4-hyd 24.0 1.3E+02 0.0029 31.5 5.3 57 55-127 73-129 (266)
232 cd04882 ACT_Bt0572_2 C-termina 23.9 1.2E+02 0.0025 23.7 3.8 55 67-123 10-64 (65)
233 TIGR02195 heptsyl_trn_II lipop 23.7 1.2E+02 0.0027 32.0 5.1 79 50-129 173-262 (334)
234 PRK10569 NAD(P)H-dependent FMN 23.4 1.7E+02 0.0036 29.3 5.6 82 52-144 2-85 (191)
235 PRK14565 triosephosphate isome 23.1 2E+02 0.0043 30.1 6.3 50 73-128 77-126 (237)
236 cd06564 GH20_DspB_LnbB-like Gl 23.1 5E+02 0.011 27.9 9.6 142 65-224 14-195 (326)
237 KOG3698 Hyaluronoglucosaminida 23.1 93 0.002 36.6 4.1 76 49-128 12-95 (891)
238 PRK05265 pyridoxine 5'-phospha 22.8 90 0.0019 32.8 3.6 45 71-133 116-161 (239)
239 COG5520 O-Glycosyl hydrolase [ 22.7 7E+02 0.015 28.2 10.4 105 116-241 111-229 (433)
240 PRK10966 exonuclease subunit S 22.7 7.9E+02 0.017 27.6 11.3 85 52-149 41-135 (407)
241 TIGR03234 OH-pyruv-isom hydrox 22.6 1.3E+02 0.0029 30.5 4.8 60 68-127 84-143 (254)
242 smart00758 PA14 domain in bact 22.5 3.8E+02 0.0081 24.4 7.4 33 482-522 47-79 (136)
243 PRK09739 hypothetical protein; 22.3 2.2E+02 0.0047 28.1 6.2 76 51-127 4-88 (199)
244 cd08560 GDPD_EcGlpQ_like_1 Gly 22.2 2.7E+02 0.0058 30.8 7.4 54 68-127 245-298 (356)
245 PLN02389 biotin synthase 22.0 1.3E+02 0.0029 33.4 5.0 50 71-123 178-229 (379)
246 PRK08195 4-hyroxy-2-oxovalerat 22.0 1.7E+02 0.0038 31.9 5.8 43 72-126 92-134 (337)
247 cd04886 ACT_ThrD-II-like C-ter 21.7 3.8E+02 0.0083 20.7 7.0 59 66-124 8-72 (73)
248 PF04909 Amidohydro_2: Amidohy 21.7 2.4E+02 0.0053 28.0 6.5 65 55-128 73-138 (273)
249 PRK12330 oxaloacetate decarbox 21.4 2E+02 0.0043 33.4 6.3 53 62-126 91-143 (499)
250 PRK07094 biotin synthase; Prov 21.4 96 0.0021 33.0 3.7 50 71-123 129-181 (323)
251 PRK10658 putative alpha-glucos 21.0 1.9E+02 0.0041 34.6 6.3 66 67-133 282-351 (665)
252 PF08306 Glyco_hydro_98M: Glyc 21.0 87 0.0019 34.2 3.2 89 54-167 104-200 (324)
253 cd06547 GH85_ENGase Endo-beta- 20.9 4.2E+02 0.0091 29.1 8.5 83 64-176 45-137 (339)
254 KOG3833 Uncharacterized conser 20.7 1.2E+02 0.0025 33.5 4.0 54 68-127 443-499 (505)
255 PLN03036 glutamine synthetase; 20.7 2.2E+02 0.0048 32.4 6.5 65 70-140 232-308 (432)
256 cd06594 GH31_glucosidase_YihQ 20.6 2.6E+02 0.0057 30.0 6.8 69 66-134 21-98 (317)
257 TIGR03217 4OH_2_O_val_ald 4-hy 20.6 1.9E+02 0.0041 31.6 5.7 45 71-127 90-134 (333)
258 PF13380 CoA_binding_2: CoA bi 20.6 1.8E+02 0.0038 26.7 4.8 44 65-124 63-106 (116)
259 TIGR00587 nfo apurinic endonuc 20.5 6E+02 0.013 26.5 9.3 83 71-175 14-98 (274)
260 cd03334 Fab1_TCP TCP-1 like do 20.5 3.5E+02 0.0075 28.4 7.5 62 50-128 86-160 (261)
261 TIGR01108 oadA oxaloacetate de 20.3 2.3E+02 0.0051 33.4 6.7 53 62-126 85-137 (582)
262 PLN02376 1-aminocyclopropane-1 20.1 3.2E+02 0.0069 31.3 7.7 111 12-126 124-238 (496)
263 PRK14042 pyruvate carboxylase 20.1 2.1E+02 0.0046 33.9 6.4 53 62-126 90-142 (596)
No 1
>PLN03059 beta-galactosidase; Provisional
Probab=100.00 E-value=6.4e-173 Score=1463.36 Aligned_cols=587 Identities=81% Similarity=1.376 Sum_probs=559.3
Q ss_pred hHHHHHHHHHhhhc-ccccccceEEEccceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccC
Q 006681 17 VKVLMLVLLSFCSW-EISFVKASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE 95 (635)
Q Consensus 17 ~~~~~~~~~~~~~~-~~~~~~~~Vt~d~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HE 95 (635)
|-.|+|.||+|++. =+...+.+|+||+++|+|||||++++||||||||+||++|+|+|+||||+|+|+|+||||||+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~v~~d~~~f~idG~p~~i~sG~iHY~R~~p~~W~d~L~k~Ka~GlNtV~tYV~Wn~HE 86 (840)
T PLN03059 7 VVFLLLFLLFLLSSSWVSHGSASVSYDHRAFIINGQRRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE 86 (840)
T ss_pred ehhhHHHHHHHhhhhhhccceeEEEEeCCEEEECCEEEEEEEeCcccCcCCHHHHHHHHHHHHHcCCCeEEEEecccccC
Confidence 33344444444442 24445678999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 96 P~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
|+||+|||+|++||++||++|+|+||||||||||||||||++||||.||+++|+|++||+||+|+++|++|+++|+++|+
T Consensus 87 p~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~~Rs~d~~fl~~v~~~~~~l~~~l~ 166 (840)
T PLN03059 87 PSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIEFRTDNGPFKAAMQKFTEKIVDMMK 166 (840)
T ss_pred CCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcccccCCHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccCCCcEEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCccceEeecCCCCCCccccCCCCccccccccCC
Q 006681 176 AEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYCEKFVPNQ 255 (635)
Q Consensus 176 ~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~~~d~p~~vi~t~nG~~cd~f~~~~ 255 (635)
+++|+++|||||||+|||||||++..+++.++++||+||++|++++|++|||+||+|.++|+++++||||.+|+.|.+++
T Consensus 167 ~~~l~~~~GGPIImvQIENEYGs~~~~~~~~d~~Yl~~l~~~~~~~Gi~VPl~t~dg~~~~~~v~~t~Ng~~~~~f~~~~ 246 (840)
T PLN03059 167 SEKLFEPQGGPIILSQIENEYGPVEWEIGAPGKAYTKWAADMAVKLGTGVPWVMCKQEDAPDPVIDTCNGFYCENFKPNK 246 (840)
T ss_pred hcceeecCCCcEEEEEecccccceecccCcchHHHHHHHHHHHHHcCCCcceEECCCCCCCccceecCCCchhhhcccCC
Confidence 88999999999999999999999988888899999999999999999999999999988999999999999999999988
Q ss_pred CCCCceeeecccccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeecccCCCCCCCCCCC-cccccCCCCCCcccCCC
Q 006681 256 NYKPKMWTEAWTGWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FVATSYDYDAPIDEYGL 334 (635)
Q Consensus 256 ~~~P~~~tE~w~Gwf~~wG~~~~~r~~ed~a~~v~~~l~~ggs~~nyYM~hGGTNfG~~~g~-~~~TSYDY~APIdE~G~ 334 (635)
+.+|+||||+|+|||++||++++.|+++|+++.++++|++|+|++|||||||||||||++|+ +++|||||||||||+|+
T Consensus 247 ~~~P~m~tE~w~GWf~~wG~~~~~r~~~d~a~~~~~~l~~g~S~~N~YMfhGGTNFG~~~Ga~~~~TSYDYdAPL~E~G~ 326 (840)
T PLN03059 247 DYKPKMWTEAWTGWYTEFGGAVPNRPAEDLAFSVARFIQNGGSFINYYMYHGGTNFGRTAGGPFIATSYDYDAPLDEYGL 326 (840)
T ss_pred CCCCcEEeccCchhHhhcCCCCCcCCHHHHHHHHHHHHHcCCeeEEeeeccCcCCcccccCCCccccccccCCccccccC
Confidence 88999999999999999999999999999999999999999999999999999999999988 79999999999999999
Q ss_pred CCchhHHHHHHHHHHHHhhccccCCCCCccccCCCceeEEEEecCCCceEEEEEecCCCceEEEEECCeeEEeCCceEEE
Q 006681 335 LNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISV 414 (635)
Q Consensus 335 ~~~pKy~~lk~lh~~i~~~~~~L~~~~~~~~~lg~~~e~~~y~~~~~~~~~Fl~N~~~~~~~~V~f~~~~y~lp~~SvsI 414 (635)
+|+|||.|||++|+++++|+++|+..+|+..+||+++|+++|...+ .|++|++|++++.+++|+|+|++|.||||||||
T Consensus 327 ~t~pKy~~lr~l~~~~~~~~~~l~~~~p~~~~lg~~~ea~~y~~~~-~caaFl~n~~~~~~~~v~f~g~~y~lp~~Svsi 405 (840)
T PLN03059 327 PREPKWGHLRDLHKAIKLCEPALVSVDPTVTSLGSNQEAHVFKSKS-ACAAFLANYDTKYSVKVTFGNGQYDLPPWSVSI 405 (840)
T ss_pred cchhHHHHHHHHHHHHHhcCccccCCCCceeccCCceeEEEccCcc-chhhheeccCCCCceeEEECCcccccCccceee
Confidence 9989999999999999999999999999999999999999999776 799999999999999999999999999999999
Q ss_pred ccCCCeeEEecccccccceeeEeeccCCccceeEeeecCCCCCCCCceeccchhhhhhccCcccceeEEEeEEEeCCCcc
Q 006681 415 LPDCKTAVFNTARVGVQSSQKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEG 494 (635)
Q Consensus 415 lpdc~~~v~nTa~v~~q~~~~~~~~~~~~~~W~~~~E~~~~~~~~~~~~~~~lleq~~~T~D~sDYlWY~T~v~~~~~~~ 494 (635)
|||||+++|||++|++|++.+.+.+..+.++|++++|++.+...+..++.++|+||+|+|+|+||||||+|+|+++.++.
T Consensus 406 lpd~~~~lfnta~v~~q~~~~~~~~~~~~~~w~~~~e~~~~~~~~~~~~~e~l~e~~n~t~d~~dYlwY~t~i~~~~~~~ 485 (840)
T PLN03059 406 LPDCKTAVFNTARLGAQSSQMKMNPVGSTFSWQSYNEETASAYTDDTTTMDGLWEQINVTRDATDYLWYMTEVHIDPDEG 485 (840)
T ss_pred cccccceeeeccccccccceeecccccccccceeecccccccccCCCcchhhHHHhhcccCCCCceEEEEEEEeecCCcc
Confidence 99999999999999999988877776667899999999656666678999999999999999999999999999998887
Q ss_pred cccCCCCceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeeeccCCCCceEEEeeeeecC
Q 006681 495 FLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLENPKLTFSKNVKLRP 574 (635)
Q Consensus 495 ~~~~~~~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~v~l~~ 574 (635)
++|++.+|+|+|.+.+|++||||||+++ |++||++.++.|+|+++|+|++
T Consensus 486 ~~~~~~~~~L~v~~~~d~~~vFVNg~~~------------------------------Gt~~~~~~~~~~~~~~~v~l~~ 535 (840)
T PLN03059 486 FLKTGQYPVLTIFSAGHALHVFINGQLA------------------------------GTVYGELSNPKLTFSQNVKLTV 535 (840)
T ss_pred ccccCCCceEEEcccCcEEEEEECCEEE------------------------------EEEEeecCCcceEEecccccCC
Confidence 7889999999999999999999999999 9999999999999999999999
Q ss_pred ceeEEEEEEeecccccccccceeeeceeeeeEEEeccCCcceeCcCCCceeeeccccccc
Q 006681 575 GVNKISLLSTSVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKVCLSLDIL 634 (635)
Q Consensus 575 G~n~islLs~tvGl~n~G~~~e~~~aGi~g~V~l~g~~~g~~dls~~~W~ykvgl~Ge~~ 634 (635)
|.|+|+|||++||++|||+|||++.+||+|||+|.|+++|++|||+++|+||+||.||.+
T Consensus 536 g~n~L~iLse~vG~~NyG~~le~~~kGI~g~V~i~g~~~g~~dls~~~W~y~lgL~GE~~ 595 (840)
T PLN03059 536 GINKISLLSVAVGLPNVGLHFETWNAGVLGPVTLKGLNEGTRDLSGWKWSYKIGLKGEAL 595 (840)
T ss_pred CceEEEEEEEeCCCCccCcccccccccccccEEEecccCCceecccCccccccCccceec
Confidence 999999999999999999999999999999999999999999999999999999999986
No 2
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=6.6e-153 Score=1258.45 Aligned_cols=515 Identities=62% Similarity=1.109 Sum_probs=500.1
Q ss_pred cceEEEccceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHH
Q 006681 36 KASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (635)
Q Consensus 36 ~~~Vt~d~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~l 115 (635)
+..|+||+++|+|||+|++++||+|||||++|+||+|+|+|||++|+|+|+||||||.|||+||+|||+|++||++||++
T Consensus 17 ~~~v~yd~~~~~idG~r~~~isGsIHY~R~~pe~W~~~i~k~k~~Gln~IqtYVfWn~Hep~~g~y~FsG~~DlvkFikl 96 (649)
T KOG0496|consen 17 SFNVTYDKRSLLIDGQRFILISGSIHYPRSTPEMWPDLIKKAKAGGLNVIQTYVFWNLHEPSPGKYDFSGRYDLVKFIKL 96 (649)
T ss_pred eeEEeccccceeecCCeeEEEEeccccccCChhhhHHHHHHHHhcCCceeeeeeecccccCCCCcccccchhHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc
Q 006681 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (635)
Q Consensus 116 a~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENE 195 (635)
|+++||||+|||||||||||++||+|.||+++|++.+||+|++|+++|++|+++|+++|| +||++|||||||+|||||
T Consensus 97 ~~~~GLyv~LRiGPyIcaEw~~GG~P~wL~~~pg~~~Rt~nepfk~~~~~~~~~iv~~mk--~L~~~qGGPIIl~QIENE 174 (649)
T KOG0496|consen 97 IHKAGLYVILRIGPYICAEWNFGGLPWWLRNVPGIVFRTDNEPFKAEMERWTTKIVPMMK--KLFASQGGPIILVQIENE 174 (649)
T ss_pred HHHCCeEEEecCCCeEEecccCCCcchhhhhCCceEEecCChHHHHHHHHHHHHHHHHHH--HHHhhcCCCEEEEEeech
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred cCCccccCCCChHHHHHHHHHHHhhcCCccceEeecCCCCCCccccCCCCccc-cccc-cCCCCCCceeeeccccccccc
Q 006681 196 FGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAPDPVINTCNGFYC-EKFV-PNQNYKPKMWTEAWTGWFTEF 273 (635)
Q Consensus 196 yg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~~~d~p~~vi~t~nG~~c-d~f~-~~~~~~P~~~tE~w~Gwf~~w 273 (635)
||.+...+++.+++|++|.+.|+..++++|||+||+|.|+|+++||+|||++| ++|. |++|++|+||||+|+|||++|
T Consensus 175 YG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mCk~~dapd~~in~cng~~c~~~f~~pn~~~kP~~wtE~wtgwf~~w 254 (649)
T KOG0496|consen 175 YGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMCKQDDAPDPGINTCNGFYCGDTFKRPNSPNKPLVWTENWTGWFTHW 254 (649)
T ss_pred hhHHHHHHHHHHHHhhccceEEEEecCCCCceeEecCCCCCCccccccCCccchhhhccCCCCCCCceecccccchhhhh
Confidence 99999899999999999999999999999999999999999999999999999 9998 999999999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCeeeeeecccCCCCCCCCCCCcccccCCCCCCcccCCCCCchhHHHHHHHHHHHHhh
Q 006681 274 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLC 353 (635)
Q Consensus 274 G~~~~~r~~ed~a~~v~~~l~~ggs~~nyYM~hGGTNfG~~~g~~~~TSYDY~APIdE~G~~~~pKy~~lk~lh~~i~~~ 353 (635)
|++.+.|++||+++.+++|+++||+++||||||||||||||+|.+++|||||||||| |..|+|||+|+|.+|.+++.|
T Consensus 255 Gg~~~~R~~e~ia~~va~fls~ggs~vNyYM~hGGTNFGrt~G~~~atsy~~dap~d--gl~~~pk~ghlk~~hts~d~~ 332 (649)
T KOG0496|consen 255 GGPHPCRPVEDIALSVARFLSKGGSSVNYYMYHGGTNFGRTNGPFIATSYDYDAPLD--GLLRQPKYGHLKPLHTSYDYC 332 (649)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCccceEEEEeecccCCCcccCcccccccccccccc--hhhcCCCccccccchhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccccCCCCCccccCCCceeEEEEecCCCceEEEEEecCCCceEEEEECCeeEEeCCceEEEccCCCeeEEecccccccce
Q 006681 354 EPALVSVDPTVKSLGKNQEAHVFNSKSGKCAAFLANYDTTFSAKVSFGNAQYDLPPWSISVLPDCKTAVFNTARVGVQSS 433 (635)
Q Consensus 354 ~~~L~~~~~~~~~lg~~~e~~~y~~~~~~~~~Fl~N~~~~~~~~V~f~~~~y~lp~~SvsIlpdc~~~v~nTa~v~~q~~ 433 (635)
|+.+.++++++.++|+.+++ |++|+.|++......|.|++..|.+|+||||||||||+++||||++.+|
T Consensus 333 ep~lv~gd~~~~kyg~~~~~---------C~~Fl~n~~~~~~~~v~f~~~~y~~~~~slsilpdck~~~~nta~~~~~-- 401 (649)
T KOG0496|consen 333 EPALVAGDITTAKYGNLREA---------CAAFLSNNNGAPAAPVPFNKPKYRLPPWSLSILPDCKTVVYNTAKVMAQ-- 401 (649)
T ss_pred CccccccCcccccccchhhH---------HHHHHhcCCCCCCCccccCCCccccCceeEEechhhcchhhhccccccc--
Confidence 99999999999999988775 9999999999999999999999999999999999999999999999766
Q ss_pred eeEeeccCCccceeEeeecCCCCCCCCceeccchhhhhhccCcccceeEEEeEEEeCCCcccccCCCCceEEEeecccEE
Q 006681 434 QKKFVPVINAFSWQSYIEETASSTDDNTFTKDGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHAL 513 (635)
Q Consensus 434 ~~~~~~~~~~~~W~~~~E~~~~~~~~~~~~~~~lleq~~~T~D~sDYlWY~T~v~~~~~~~~~~~~~~~~L~v~s~gh~l 513 (635)
|.++.|+++......++. .+|||+++|+|+|| +|+++|+ | |.||++
T Consensus 402 ------------~~~~~e~~~~~~~~~~~~--~ll~~~~~t~d~sd----~t~~~i~-------------l---s~g~~~ 447 (649)
T KOG0496|consen 402 ------------WISFTEPIPSEAVGQSFG--GLLEQTNLTKDKSD----TTSLKIP-------------L---SLGHAL 447 (649)
T ss_pred ------------cccccCCCccccccCcce--EEEEEEeeccccCC----CceEeec-------------c---cccceE
Confidence 888999986666666676 89999999999999 8888766 2 899999
Q ss_pred EEEEcCeecccccchhhHhHhhccccccccccccccCCceeeeccCCCCceEEEeeeeecCceeEEEEEEeecccccccc
Q 006681 514 QVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGT 593 (635)
Q Consensus 514 hvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~v~l~~G~n~islLs~tvGl~n~G~ 593 (635)
||||||+++ |+.+|+.++.+++|++++.|+.|.|+|+|||++||++|||
T Consensus 448 hVfvNg~~~------------------------------G~~~g~~~~~~~~~~~~~~l~~g~n~l~iL~~~~G~~n~G- 496 (649)
T KOG0496|consen 448 HVFVNGEFA------------------------------GSLHGNNEKIKLNLSQPVGLKAGENKLALLSENVGLPNYG- 496 (649)
T ss_pred EEEECCEEe------------------------------eeEeccccceeEEeecccccccCcceEEEEEEecCCCCcC-
Confidence 999999999 9999999999999999999999999999999999999999
Q ss_pred cceeeeceeeeeEEEeccCCcceeCcCCCceeeeccccccc
Q 006681 594 HFEKWNAGVLGPVTLKGLNEGTRDISKQKWTYKVCLSLDIL 634 (635)
Q Consensus 594 ~~e~~~aGi~g~V~l~g~~~g~~dls~~~W~ykvgl~Ge~~ 634 (635)
|||++.+||+|||+|.|+ +|+++++|+||+||+||.+
T Consensus 497 ~~e~~~~Gi~g~v~l~g~----~~l~~~~w~~~~gl~ge~~ 533 (649)
T KOG0496|consen 497 HFENDFKGILGPVYLNGL----IDLTWTKWPYKVGLKGEKL 533 (649)
T ss_pred cccccccccccceEEeee----eccceeecceecccccchh
Confidence 999999999999999986 8999999999999999976
No 3
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=100.00 E-value=1.8e-90 Score=728.97 Aligned_cols=296 Identities=43% Similarity=0.795 Sum_probs=232.9
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE
Q 006681 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 45 ~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi 124 (635)
+|+|||||++++|||+||+|+||++|+|+|+||||+|+|||+||||||+|||+||+|||+|++||++||++|+|+||+||
T Consensus 1 ~~~~~g~~~~~~~Ge~hy~r~p~~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vi 80 (319)
T PF01301_consen 1 SFLIDGKPFFILSGEFHYFRIPPEYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVI 80 (319)
T ss_dssp CEEETTEEE-EEEEEE-GGGS-GGGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEE
T ss_pred CeEECCEEEEEEEeeeccccCChhHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCC
Q 006681 125 LRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIG 204 (635)
Q Consensus 125 LR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~~ 204 (635)
|||||||||||++||+|.||..++++++||+||+|+++|++|+++|+++++ ++++++||||||+|||||||..
T Consensus 81 lrpGpyi~aE~~~gG~P~Wl~~~~~~~~R~~~~~~~~~~~~~~~~~~~~~~--~~~~~~GGpII~vQvENEyg~~----- 153 (319)
T PF01301_consen 81 LRPGPYICAEWDNGGLPAWLLRKPDIRLRTNDPPFLEAVERWYRALAKIIK--PLQYTNGGPIIMVQVENEYGSY----- 153 (319)
T ss_dssp EEEES---TTBGGGG--GGGGGSTTS-SSSS-HHHHHHHHHHHHHHHHHHG--GGBGGGTSSEEEEEESSSGGCT-----
T ss_pred ecccceecccccchhhhhhhhccccccccccchhHHHHHHHHHHHHHHHHH--hhhhcCCCceehhhhhhhhCCC-----
Confidence 999999999999999999999999999999999999999999999999999 8999999999999999999943
Q ss_pred CChHHHHHHHHHHHhhcCCc-cceEeecC--------CCCCCccccCCCCcccccc--------ccCCCCCCceeeeccc
Q 006681 205 APGKAYAKWAAQMAVGLNTG-VPWVMCKQ--------DDAPDPVINTCNGFYCEKF--------VPNQNYKPKMWTEAWT 267 (635)
Q Consensus 205 ~~~~~Y~~wl~~~a~~~g~~-VPwi~c~~--------~d~p~~vi~t~nG~~cd~f--------~~~~~~~P~~~tE~w~ 267 (635)
.++++||+.|++++++.++. ++.++++. .++|+..+.+|+++.|... ...+|++|.+++|+|+
T Consensus 154 ~~~~~Y~~~l~~~~~~~g~~~~~~~t~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~P~~~~E~~~ 233 (319)
T PF01301_consen 154 GTDRAYMEALKDAYRDWGIDPVLLYTTDGPWGSWLPDGGLPGADIYATDNFPPGDNPDEYFGDQRSFQPNQPLMCTEFWG 233 (319)
T ss_dssp SS-HHHHHHHHHHHHHTT-SSSBEEEEESSSHCCHCCC-TTTGSCEEEEEETTTSSHHHHHHHHHHHHTTS--EEEEEES
T ss_pred cccHhHHHHHHHHHHHhhCccceeeccCCCcccccccCCCCcceEEeccccCCCchHHHHHhhhhhcCCCCCeEEEEecc
Confidence 46799999999999999987 55555543 2356655667777777431 3456889999999999
Q ss_pred ccccccCCCCCCCChHHHHHHHHHHHHhCCeeeeeecccCCCCCCCCCCC-cc----cccCCCCCCcccCCCCCchhHHH
Q 006681 268 GWFTEFGSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGG-FV----ATSYDYDAPIDEYGLLNEPKWGH 342 (635)
Q Consensus 268 Gwf~~wG~~~~~r~~ed~a~~v~~~l~~ggs~~nyYM~hGGTNfG~~~g~-~~----~TSYDY~APIdE~G~~~~pKy~~ 342 (635)
|||++||++.+.+++++++..+++++++| +++||||||||||||+++|+ .. +|||||+|||+|+|+++ |||.+
T Consensus 234 Gwf~~WG~~~~~~~~~~~~~~l~~~l~~g-~~~nyYM~hGGTNfG~~~ga~~~~~p~~TSYDY~ApI~E~G~~~-~Ky~~ 311 (319)
T PF01301_consen 234 GWFDHWGGPHYTRPAEDVAADLARMLSKG-NSLNYYMFHGGTNFGFWAGANYYGQPDITSYDYDAPIDEYGQLT-PKYYE 311 (319)
T ss_dssp S---BTTS--HHHHHHHHHHHHHHHHHHC-SEEEEEECE--B--TT-B-EETTTEEB-SB--TT-SB-TTS-B--HHHHH
T ss_pred ccccccCCCCccCCHHHHHHHHHHHHHhh-cccceeeccccCCccccccCCCCCCCCcccCCcCCccCcCCCcC-HHHHH
Confidence 99999999999999999999999999999 66899999999999999987 33 49999999999999997 99999
Q ss_pred HHHHHHH
Q 006681 343 LRDLHKA 349 (635)
Q Consensus 343 lk~lh~~ 349 (635)
||+||.+
T Consensus 312 lr~l~~~ 318 (319)
T PF01301_consen 312 LRRLHQK 318 (319)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9999975
No 4
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=326.62 Aligned_cols=293 Identities=24% Similarity=0.358 Sum_probs=203.6
Q ss_pred EEEccceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEE-ceecCccCCcCCcccccChhhHHHHHHHHH
Q 006681 39 VSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (635)
Q Consensus 39 Vt~d~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~~G~ydF~G~~dL~~Fl~la~ 117 (635)
|.+++..+++||+|++++||++||+|+|+++|.|+|+|||++|+|+|++ |+.||.|||++|+|||+ .+|++ |+++|+
T Consensus 1 ~~~~~~~~~~dg~~~~l~gG~y~p~~~p~~~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~-~~D~~-~l~~a~ 78 (673)
T COG1874 1 VSYDGYSFIRDGRRILLYGGDYYPERWPRETWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFT-WLDEI-FLERAY 78 (673)
T ss_pred CcccccceeeCCceeEEeccccChHHCCHHHHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcc-cchHH-HHHHHH
Confidence 4678999999999999999999999999999999999999999999999 99999999999999999 88999 999999
Q ss_pred HcCcEEEEecCc-eeeeecCCCCCCcccccCCCcccc---------cCChhhHHHHHHHHHHHHHHhhhccccccCCCcE
Q 006681 118 QAGLYVHLRIGP-YVCAEWNYGGFPVWLKYVPGIEFR---------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPI 187 (635)
Q Consensus 118 e~GL~ViLR~GP-YIcAEw~~GG~P~WL~~~p~i~~R---------t~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpI 187 (635)
+.||+||||||| ..|.+|-.+++|.||...+.-..| .+++-|++++++.+++|.+++ +++|++|
T Consensus 79 ~~Gl~vil~t~P~g~~P~Wl~~~~PeiL~~~~~~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~------~~~~~~v 152 (673)
T COG1874 79 KAGLYVILRTGPTGAPPAWLAKKYPEILAVDENGRVRSDGARENICPVSPVYREYLDRILQQIRERL------YGNGPAV 152 (673)
T ss_pred hcCceEEEecCCCCCCchHHhcCChhheEecCCCcccCCCcccccccccHHHHHHHHHHHHHHHHHH------hccCCce
Confidence 999999999999 999999999999999887653333 345668888777544444432 4789999
Q ss_pred EEeccccccCCccccCCCChHHHHHHHHHHHhhc-CCccceEeecCC---------CCCCcccc-CCCCccc--cccccC
Q 006681 188 ILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL-NTGVPWVMCKQD---------DAPDPVIN-TCNGFYC--EKFVPN 254 (635)
Q Consensus 188 I~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~-g~~VPwi~c~~~---------d~p~~vi~-t~nG~~c--d~f~~~ 254 (635)
|+||+|||||++.+.++.|.+.+..||++.+-.+ ..+-+|=+.-.+ ..|.+.-+ ...+.+- ..|..-
T Consensus 153 ~~w~~dneY~~~~~~~~~~~~~f~~wLk~~yg~l~~ln~~w~t~~ws~t~~~~~~i~~p~~~~e~~~~~~~ld~~~f~~e 232 (673)
T COG1874 153 ITWQNDNEYGGHPCYCDYCQAAFRLWLKKGYGSLDNLNEAWGTSFWSHTYKDFDEIMSPNPFGELPLPGLYLDYRRFESE 232 (673)
T ss_pred eEEEccCccCCccccccccHHHHHHHHHhCcchHHhhhhhhhhhhcccccccHHhhcCCCCccccCCccchhhHhhhhhh
Confidence 9999999999976667789999999999887321 223333211100 01110000 0001100 011110
Q ss_pred C-CCCCceeeecccccc-cccCCCCCCCC-hHHHHHHHHHHHHhCCeeeeeecccCCCCCC------CCCCC----c---
Q 006681 255 Q-NYKPKMWTEAWTGWF-TEFGSAVPTRP-AEDLVFSVARFIQSGGSFINYYMYHGGTNFG------RTSGG----F--- 318 (635)
Q Consensus 255 ~-~~~P~~~tE~w~Gwf-~~wG~~~~~r~-~ed~a~~v~~~l~~ggs~~nyYM~hGGTNfG------~~~g~----~--- 318 (635)
+ ..-+....|.|-+|| ..|..+.-... .+--++.++..+..... -||||+|+|++|+ +.+++ +
T Consensus 233 ~~~~~~~~~~~~~~~~~P~~pvt~nl~~~~~~~~~~~~~~~ld~~sw-dny~~~~~~~~~~~~~h~l~r~~~~~~~~~~m 311 (673)
T COG1874 233 QILEFVREEGEAIKAYFPNRPVTPNLLAAFKKFDAYKWEKVLDFASW-DNYPAWHRGRDFTKFIHDLFRNGKQGQPFWLM 311 (673)
T ss_pred hhHHHHHHHHHHHHHhCCCCCCChhHhhhhhhcchHHHHHhcChhhh-hhhhhhccccchhhhhHHHHHhhccCCceeec
Confidence 0 000223334444455 33322211111 11122333444444433 7999999999999 33332 1
Q ss_pred ----ccccCCCCCCcccCCCCCchhH
Q 006681 319 ----VATSYDYDAPIDEYGLLNEPKW 340 (635)
Q Consensus 319 ----~~TSYDY~APIdE~G~~~~pKy 340 (635)
..+++++.+.+.+.|.++-|++
T Consensus 312 e~~P~~vn~~~~n~~~~~G~~~l~s~ 337 (673)
T COG1874 312 EQLPSVVNWALYNKLKRPGALRLPSL 337 (673)
T ss_pred cCCcchhhhhhccCCCCCcccccccc
Confidence 4799999999999999654444
No 5
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=99.84 E-value=1.3e-20 Score=202.26 Aligned_cols=264 Identities=20% Similarity=0.279 Sum_probs=161.8
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEE-ceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCC
Q 006681 61 HYPRSTPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGG 139 (635)
Q Consensus 61 HY~R~~pe~W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG 139 (635)
++..+|++.|+++|++||++|+|+|++ .+.|+..||+||+|||+ .|+++|++|+++||+|+|++. .+.
T Consensus 3 ~pe~~~~e~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~---~lD~~l~~a~~~Gi~viL~~~--------~~~ 71 (374)
T PF02449_consen 3 YPEQWPEEEWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFS---WLDRVLDLAAKHGIKVILGTP--------TAA 71 (374)
T ss_dssp -GGGS-CCHHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---H---HHHHHHHHHHCTT-EEEEEEC--------TTT
T ss_pred CcccCCHHHHHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecH---HHHHHHHHHHhccCeEEEEec--------ccc
Confidence 455689999999999999999999996 67799999999999999 799999999999999999975 567
Q ss_pred CCccccc-CCCccc----------------ccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCcccc
Q 006681 140 FPVWLKY-VPGIEF----------------RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWD 202 (635)
Q Consensus 140 ~P~WL~~-~p~i~~----------------Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~ 202 (635)
.|.||.+ .|++.. ..++|.|++++++++++++++++++ ..||++||+||++...+.
T Consensus 72 ~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~-------p~vi~~~i~NE~~~~~~~ 144 (374)
T PF02449_consen 72 PPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAYREYARRFIRALAERYGDH-------PAVIGWQIDNEPGYHRCY 144 (374)
T ss_dssp S-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTT-------TTEEEEEECCSTTCTS--
T ss_pred cccchhhhcccccccCCCCCcCccCCccccchhHHHHHHHHHHHHHHHHhhcccc-------ceEEEEEeccccCcCcCC
Confidence 9999965 466432 1346889999999999999988854 479999999999875333
Q ss_pred CCCChHHHHHHHHHHHhhc-------CC-------------ccceEeecCC-----------------------------
Q 006681 203 IGAPGKAYAKWAAQMAVGL-------NT-------------GVPWVMCKQD----------------------------- 233 (635)
Q Consensus 203 ~~~~~~~Y~~wl~~~a~~~-------g~-------------~VPwi~c~~~----------------------------- 233 (635)
+..+.++|.+||++++..+ |+ ..|--+....
T Consensus 145 ~~~~~~~f~~wLk~kY~ti~~LN~aWgt~~ws~~~~~f~~v~~P~~~~~~~~~~~~~D~~rF~~~~~~~~~~~~~~~ir~ 224 (374)
T PF02449_consen 145 SPACQAAFRQWLKEKYGTIEALNRAWGTAFWSQRYSSFDEVPPPRPTSSPENPAQWLDWYRFQSDRVAEFFRWQADIIRE 224 (374)
T ss_dssp SHHHHHHHHHHHHHHHSSHHHHHHHHTTTGGG---SSGGG---S-S-SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHhCCHHHHHHHHcCCcccCccCcHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999987521 11 1222211000
Q ss_pred CCCCccccC------CCCc-------ccc-----cc----------------------ccCCCCCCceeeeccccccccc
Q 006681 234 DAPDPVINT------CNGF-------YCE-----KF----------------------VPNQNYKPKMWTEAWTGWFTEF 273 (635)
Q Consensus 234 d~p~~vi~t------~nG~-------~cd-----~f----------------------~~~~~~~P~~~tE~w~Gwf~~w 273 (635)
..|+..|-+ ..+. ++| .+ ......+|.+.+|..+| -..|
T Consensus 225 ~~p~~~vt~n~~~~~~~~~d~~~~a~~~D~~~~d~Y~~~~~~~~~~~~~~~a~~~dl~R~~~~~kpf~v~E~~~g-~~~~ 303 (374)
T PF02449_consen 225 YDPDHPVTTNFMGSWFNGIDYFKWAKYLDVVSWDSYPDGSFDFYDDDPYSLAFNHDLMRSLAKGKPFWVMEQQPG-PVNW 303 (374)
T ss_dssp HSTT-EEE-EE-TT---SS-HHHHGGGSSSEEEEE-HHHHHTTTT--TTHHHHHHHHHHHHTTT--EEEEEE--S---SS
T ss_pred hCCCceEEeCccccccCcCCHHHHHhhCCcceeccccCcccCCCCCCHHHHHHHHHHHHhhcCCCceEeecCCCC-CCCC
Confidence 012211110 0000 011 00 01246789999999998 5567
Q ss_pred CCCCCCCChHHHHHHHHHHHHhCCeeeeeecccCCCCCCCCCCCcccccCCCCCCcccCCCCCchhHHHHHHHHHHHHh
Q 006681 274 GSAVPTRPAEDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKL 352 (635)
Q Consensus 274 G~~~~~r~~ed~a~~v~~~l~~ggs~~nyYM~hGGTNfG~~~g~~~~TSYDY~APIdE~G~~~~pKy~~lk~lh~~i~~ 352 (635)
+.......++.+......-++.|+..+.|+-+ ...-+|.-.. ..+-|+-+|...+++|.+++++.+.|+.
T Consensus 304 ~~~~~~~~pg~~~~~~~~~~A~Ga~~i~~~~w-r~~~~g~E~~--------~~g~~~~dg~~~~~~~~e~~~~~~~l~~ 373 (374)
T PF02449_consen 304 RPYNRPPRPGELRLWSWQAIAHGADGILFWQW-RQSRFGAEQF--------HGGLVDHDGREPTRRYREVAQLGRELKK 373 (374)
T ss_dssp SSS-----TTHHHHHHHHHHHTT-S-EEEC-S-B--SSSTTTT--------S--SB-TTS--B-HHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCeeEeeec-cCCCCCchhh--------hcccCCccCCCCCcHHHHHHHHHHHHhc
Confidence 66555556677776666788999999988866 2223332111 2366788884445899999999988874
No 6
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=99.27 E-value=1.5e-10 Score=120.81 Aligned_cols=192 Identities=20% Similarity=0.257 Sum_probs=126.2
Q ss_pred EEEccceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHH
Q 006681 39 VSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF 112 (635)
Q Consensus 39 Vt~d~~~l~idGkr~~l~sG~iHY~R------~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~F 112 (635)
|.++++.|+|||||+.|-+...|... .+++.|..+|++||++|+|+|++ .|-|. -.+|
T Consensus 1 vev~~~~~~lNGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~-----~h~p~-----------~~~~ 64 (298)
T PF02836_consen 1 VEVKDGGFYLNGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRT-----HHYPP-----------SPRF 64 (298)
T ss_dssp EEEETTEEEETTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEE-----TTS-------------SHHH
T ss_pred CEEECCEEEECCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEc-----ccccC-----------cHHH
Confidence 67889999999999999999999533 57899999999999999999999 56664 1688
Q ss_pred HHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEecc
Q 006681 113 IKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (635)
Q Consensus 113 l~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QI 192 (635)
+++|.+.||.|+..+.=.-++.|..-|. ...+..|+.|++.+.+-+++++++.++|| .||++=+
T Consensus 65 ~~~cD~~GilV~~e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~v~~~~NHP-------SIi~W~~ 128 (298)
T PF02836_consen 65 YDLCDELGILVWQEIPLEGHGSWQDFGN---------CNYDADDPEFRENAEQELREMVRRDRNHP-------SIIMWSL 128 (298)
T ss_dssp HHHHHHHT-EEEEE-S-BSCTSSSSTSC---------TSCTTTSGGHHHHHHHHHHHHHHHHTT-T-------TEEEEEE
T ss_pred HHHHhhcCCEEEEeccccccCccccCCc---------cccCCCCHHHHHHHHHHHHHHHHcCcCcC-------chheeec
Confidence 9999999999987652111222221111 13566789999998888888888888665 8999999
Q ss_pred ccccCCccccCCCChHHHHHHHHHHHhhcCCccceEeecCCC--CCCccc-cCCCCccc-----ccc----cc--CCCCC
Q 006681 193 ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDD--APDPVI-NTCNGFYC-----EKF----VP--NQNYK 258 (635)
Q Consensus 193 ENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~~~d--~p~~vi-~t~nG~~c-----d~f----~~--~~~~~ 258 (635)
-||- ....+++.|.+++++++..-|........ ..+..+ +...+.|- +.+ .. ..+.+
T Consensus 129 gNE~---------~~~~~~~~l~~~~k~~DptRpv~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~k 199 (298)
T PF02836_consen 129 GNES---------DYREFLKELYDLVKKLDPTRPVTYASNGWDPYVDDIIFDIYSGWYNGYGDPEDFEKYLEDWYKYPDK 199 (298)
T ss_dssp EESS---------HHHHHHHHHHHHHHHH-TTSEEEEETGTSGGSTSSCEECSETTTSSSCCHHHHHHHHHHHHHHHCTS
T ss_pred CccC---------ccccchhHHHHHHHhcCCCCceeecccccccccccccccccccccCCcccHHHHHHHHHhccccCCC
Confidence 9998 24677888999999988887766544310 111111 11111111 111 11 35789
Q ss_pred Cceeeeccccccc
Q 006681 259 PKMWTEAWTGWFT 271 (635)
Q Consensus 259 P~~~tE~w~Gwf~ 271 (635)
|.+.+|+....+.
T Consensus 200 P~i~sEyg~~~~~ 212 (298)
T PF02836_consen 200 PIIISEYGADAYN 212 (298)
T ss_dssp -EEEEEESEBBSS
T ss_pred CeEehhccccccc
Confidence 9999998655443
No 7
>PRK10150 beta-D-glucuronidase; Provisional
Probab=99.00 E-value=7e-08 Score=110.51 Aligned_cols=160 Identities=16% Similarity=0.104 Sum_probs=113.4
Q ss_pred ceEEEccceEEECCEEeEEEEEEeeCCC------CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHH
Q 006681 37 ASVSYDHKAVIINGQKRILISGSIHYPR------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (635)
Q Consensus 37 ~~Vt~d~~~l~idGkr~~l~sG~iHY~R------~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~ 110 (635)
++|+++++.|+|||+|+++-+...|... .+++.|..+|+.||++|+|+|++ .|-|. =.
T Consensus 276 R~i~~~~~~f~lNG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~-----sh~p~-----------~~ 339 (604)
T PRK10150 276 RSVAVKGGQFLINGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRT-----SHYPY-----------SE 339 (604)
T ss_pred EEEEEeCCEEEECCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEe-----ccCCC-----------CH
Confidence 4588999999999999999999888432 57788999999999999999999 35553 15
Q ss_pred HHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc--------cCCCcccccCChhhHHHHHHHHHHHHHHhhhcccccc
Q 006681 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK--------YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQT 182 (635)
Q Consensus 111 ~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~--------~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~ 182 (635)
+|+++|.+.||+|+-.+. .-|+..|.. ..+....-..+|.++++..+-+++++++.++|
T Consensus 340 ~~~~~cD~~GllV~~E~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mv~r~~NH----- 406 (604)
T PRK10150 340 EMLDLADRHGIVVIDETP--------AVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIRELIARDKNH----- 406 (604)
T ss_pred HHHHHHHhcCcEEEEecc--------cccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhccCC-----
Confidence 899999999999987642 111222221 11211122345667776666666666666655
Q ss_pred CCCcEEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCccceEeec
Q 006681 183 QGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCK 231 (635)
Q Consensus 183 ~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~ 231 (635)
..||++-|-||.... ......+++.+.+.+++++..-|...+.
T Consensus 407 --PSIi~Ws~gNE~~~~----~~~~~~~~~~l~~~~k~~DptR~vt~~~ 449 (604)
T PRK10150 407 --PSVVMWSIANEPASR----EQGAREYFAPLAELTRKLDPTRPVTCVN 449 (604)
T ss_pred --ceEEEEeeccCCCcc----chhHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 489999999996432 1223567777888888988887776553
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.85 E-value=4.9e-08 Score=98.88 Aligned_cols=161 Identities=19% Similarity=0.210 Sum_probs=108.7
Q ss_pred CCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccC-CcCCc-ccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 49 NGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-PTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 49 dGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HE-P~~G~-ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
+|+++.+.+-+.|+.. +..-++.+++||+.|+|+|++.+.|...+ |.|+. ++=+.-..|+++|+.|+++||+|||.
T Consensus 4 ~G~~v~~~G~n~~w~~--~~~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild 81 (281)
T PF00150_consen 4 NGKPVNWRGFNTHWYN--PSITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILD 81 (281)
T ss_dssp TSEBEEEEEEEETTSG--GGSHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCCeEEeeeeecccCC--CCCHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEE
Confidence 6899999999999422 12778999999999999999999995555 67764 66666779999999999999999987
Q ss_pred cCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccC---
Q 006681 127 IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDI--- 203 (635)
Q Consensus 127 ~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~--- 203 (635)
+= +. |.|...... -...+...+...++.+.|++++|+ ..+|++++|=||........
T Consensus 82 ~h----~~------~~w~~~~~~---~~~~~~~~~~~~~~~~~la~~y~~-------~~~v~~~el~NEP~~~~~~~~w~ 141 (281)
T PF00150_consen 82 LH----NA------PGWANGGDG---YGNNDTAQAWFKSFWRALAKRYKD-------NPPVVGWELWNEPNGGNDDANWN 141 (281)
T ss_dssp EE----ES------TTCSSSTST---TTTHHHHHHHHHHHHHHHHHHHTT-------TTTTEEEESSSSGCSTTSTTTTS
T ss_pred ec----cC------ccccccccc---cccchhhHHHHHhhhhhhccccCC-------CCcEEEEEecCCccccCCccccc
Confidence 52 21 667332211 112233444555566677777653 34799999999997653210
Q ss_pred CCChHH---HHHHHHHHHhhcCCccceEeec
Q 006681 204 GAPGKA---YAKWAAQMAVGLNTGVPWVMCK 231 (635)
Q Consensus 204 ~~~~~~---Y~~wl~~~a~~~g~~VPwi~c~ 231 (635)
...... +.+.+.+..++.+.+.+++...
T Consensus 142 ~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~~ 172 (281)
T PF00150_consen 142 AQNPADWQDWYQRAIDAIRAADPNHLIIVGG 172 (281)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred cccchhhhhHHHHHHHHHHhcCCcceeecCC
Confidence 001233 4444555567778777665543
No 9
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=98.77 E-value=1.6e-07 Score=113.60 Aligned_cols=258 Identities=19% Similarity=0.184 Sum_probs=149.2
Q ss_pred eEEEccceEEECCEEeEEEEEEeeCC--C----CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHH
Q 006681 38 SVSYDHKAVIINGQKRILISGSIHYP--R----STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (635)
Q Consensus 38 ~Vt~d~~~l~idGkr~~l~sG~iHY~--R----~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~ 111 (635)
+|+++++.|.|||+|+++-+...|-. . .+++.|+.+|+.||++|+|+|++ .|-|. =.+
T Consensus 319 ~iei~~~~f~lNGkpi~lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~-----sHyP~-----------~~~ 382 (1021)
T PRK10340 319 DIKVRDGLFWINNRYVKLHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRT-----AHYPN-----------DPR 382 (1021)
T ss_pred EEEEECCEEEECCEEEEEEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHH
Confidence 47888899999999999999998832 2 57899999999999999999998 35453 148
Q ss_pred HHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 006681 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (635)
Q Consensus 112 Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q 191 (635)
|+++|.|.||+|+-.. |..|.-|... .+...-+++|.+.++..+=+++++.+.++ ...||++=
T Consensus 383 fydlcDe~GllV~dE~-~~e~~g~~~~---------~~~~~~~~~p~~~~~~~~~~~~mV~RdrN-------HPSIi~Ws 445 (1021)
T PRK10340 383 FYELCDIYGLFVMAET-DVESHGFANV---------GDISRITDDPQWEKVYVDRIVRHIHAQKN-------HPSIIIWS 445 (1021)
T ss_pred HHHHHHHCCCEEEECC-cccccCcccc---------cccccccCCHHHHHHHHHHHHHHHHhCCC-------CCEEEEEE
Confidence 9999999999999775 3322222110 01112246676765544445555555554 45899999
Q ss_pred cccccCCccccCCCChHHHHHHHHHHHhhcCCccceEeecCCCCC--CccccCCCCcc--ccccccCCCCCCceeeeccc
Q 006681 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQDDAP--DPVINTCNGFY--CEKFVPNQNYKPKMWTEAWT 267 (635)
Q Consensus 192 IENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~~~d~p--~~vi~t~nG~~--cd~f~~~~~~~P~~~tE~w~ 267 (635)
+-||-+. +.. ++.+.+.+++++-.-|.. +.+.... ..++....+.+ +..+....+.+|.+.+|+--
T Consensus 446 lGNE~~~--------g~~-~~~~~~~~k~~DptR~v~-~~~~~~~~~~Dv~~~~Y~~~~~~~~~~~~~~~kP~i~~Ey~h 515 (1021)
T PRK10340 446 LGNESGY--------GCN-IRAMYHAAKALDDTRLVH-YEEDRDAEVVDVISTMYTRVELMNEFGEYPHPKPRILCEYAH 515 (1021)
T ss_pred CccCccc--------cHH-HHHHHHHHHHhCCCceEE-eCCCcCccccceeccccCCHHHHHHHHhCCCCCcEEEEchHh
Confidence 9999753 122 355667777877666653 3322111 11222111111 12222334579999999721
Q ss_pred ccccccCCCCCCCChHHHHHHHHH--HH----------------HhCCeeeeeecccCCCCCCCCCCCcccccCCCCCCc
Q 006681 268 GWFTEFGSAVPTRPAEDLVFSVAR--FI----------------QSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPI 329 (635)
Q Consensus 268 Gwf~~wG~~~~~r~~ed~a~~v~~--~l----------------~~ggs~~nyYM~hGGTNfG~~~g~~~~TSYDY~API 329 (635)
.+|.. + ...++.-..+.+ .+ ..+|. -|+.+||- ||.+.. ..++--+.-+
T Consensus 516 ----amgn~-~-g~~~~yw~~~~~~p~l~GgfiW~~~D~~~~~~~~~G~---~~~~ygGd-~g~~p~---~~~f~~~Glv 582 (1021)
T PRK10340 516 ----AMGNG-P-GGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGN---VWYKYGGD-YGDYPN---NYNFCIDGLI 582 (1021)
T ss_pred ----ccCCC-C-CCHHHHHHHHHhCCceeEEeeeecCcccccccCCCCC---EEEEECCC-CCCCCC---CcCcccceeE
Confidence 12211 1 012332222111 00 00111 12334442 443221 1122234668
Q ss_pred ccCCCCCchhHHHHHHHHHHHHh
Q 006681 330 DEYGLLNEPKWGHLRDLHKAIKL 352 (635)
Q Consensus 330 dE~G~~~~pKy~~lk~lh~~i~~ 352 (635)
+-+|.++ |.+.+.|.+..-++-
T Consensus 583 ~~dr~p~-p~~~e~k~~~~pv~~ 604 (1021)
T PRK10340 583 YPDQTPG-PGLKEYKQVIAPVKI 604 (1021)
T ss_pred CCCCCCC-hhHHHHHHhcceEEE
Confidence 8888885 999999998877654
No 10
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=98.74 E-value=2.4e-07 Score=112.04 Aligned_cols=148 Identities=20% Similarity=0.203 Sum_probs=104.4
Q ss_pred eEEEccceEEECCEEeEEEEEEeeC--C----CCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHH
Q 006681 38 SVSYDHKAVIINGQKRILISGSIHY--P----RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVR 111 (635)
Q Consensus 38 ~Vt~d~~~l~idGkr~~l~sG~iHY--~----R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~ 111 (635)
+|+++++.|+|||+|+++-+...|- + +.+++.|+.+|+.||++|+|+|++ .|-|. =.+
T Consensus 335 ~iei~~~~f~LNGkpi~lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~-----sHyP~-----------~p~ 398 (1027)
T PRK09525 335 KVEIENGLLKLNGKPLLIRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRC-----SHYPN-----------HPL 398 (1027)
T ss_pred EEEEECCEEEECCEEEEEEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEe-----cCCCC-----------CHH
Confidence 4778888999999999999999983 2 368899999999999999999999 35553 158
Q ss_pred HHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 006681 112 FIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (635)
Q Consensus 112 Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q 191 (635)
|.++|.|.||+|+-... . | ..|-.|.. .-.++|.|.+++.+=+++++.+.++| ..||+|=
T Consensus 399 fydlcDe~GilV~dE~~-~---e-~hg~~~~~--------~~~~dp~~~~~~~~~~~~mV~RdrNH-------PSIi~WS 458 (1027)
T PRK09525 399 WYELCDRYGLYVVDEAN-I---E-THGMVPMN--------RLSDDPRWLPAMSERVTRMVQRDRNH-------PSIIIWS 458 (1027)
T ss_pred HHHHHHHcCCEEEEecC-c---c-ccCCcccc--------CCCCCHHHHHHHHHHHHHHHHhCCCC-------CEEEEEe
Confidence 89999999999997752 1 1 11111210 01356777766555555555555544 5899999
Q ss_pred cccccCCccccCCCChHHHHHHHHHHHhhcCCccceEee
Q 006681 192 IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC 230 (635)
Q Consensus 192 IENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c 230 (635)
+-||-+.. .....+.+.+++++-.-|....
T Consensus 459 lgNE~~~g---------~~~~~l~~~~k~~DptRpV~y~ 488 (1027)
T PRK09525 459 LGNESGHG---------ANHDALYRWIKSNDPSRPVQYE 488 (1027)
T ss_pred CccCCCcC---------hhHHHHHHHHHhhCCCCcEEEC
Confidence 99996531 1234455666777767776554
No 11
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=98.61 E-value=8.4e-08 Score=87.37 Aligned_cols=87 Identities=23% Similarity=0.305 Sum_probs=63.0
Q ss_pred cchhhhhhccCcccceeEEEeEEEeCCCcccccCCCCce-EEEe-ecccEEEEEEcCeecccccchhhHhHhhccccccc
Q 006681 465 DGLWEQVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPL-LTIW-SAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQ 542 (635)
Q Consensus 465 ~~lleq~~~T~D~sDYlWY~T~v~~~~~~~~~~~~~~~~-L~v~-s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~ 542 (635)
..+++..+.+++.++|+||+|+++.+..+. .-. |.+. +.+|.++|||||+++
T Consensus 21 ~~~~l~~~~~g~~~g~~~Yrg~F~~~~~~~------~~~~l~~~~g~~~~~~vwVNG~~~-------------------- 74 (111)
T PF13364_consen 21 TGPVLYASDYGFHAGYLWYRGTFTGTGQDT------SLTPLNIQGGNAFRASVWVNGWFL-------------------- 74 (111)
T ss_dssp SSSSTCCGCGTSSSCEEEEEEEEETTTEEE------EEE-EEECSSTTEEEEEEETTEEE--------------------
T ss_pred CCceeccCccccCCCCEEEEEEEeCCCcce------eEEEEeccCCCceEEEEEECCEEe--------------------
Confidence 345678888999999999999996433331 112 3444 679999999999999
Q ss_pred cccccccCCceeeeccCCCCceEEEeee-eecCceeEEEEEEeeccc
Q 006681 543 QLTFSFYPYAGTVYGSLENPKLTFSKNV-KLRPGVNKISLLSTSVGL 588 (635)
Q Consensus 543 ~~~~~~~~~~g~~~g~~~~~~~~~~~~v-~l~~G~n~islLs~tvGl 588 (635)
|+.++. ..++.+|..|. .|+.+.|.|++|...+|.
T Consensus 75 ----------G~~~~~-~g~q~tf~~p~~il~~~n~v~~vl~~~~g~ 110 (111)
T PF13364_consen 75 ----------GSYWPG-IGPQTTFSVPAGILKYGNNVLVVLWDNMGH 110 (111)
T ss_dssp ----------EEEETT-TECCEEEEE-BTTBTTCEEEEEEEEE-STT
T ss_pred ----------eeecCC-CCccEEEEeCceeecCCCEEEEEEEeCCCC
Confidence 888843 23447777776 378888888999999884
No 12
>COG3250 LacZ Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]
Probab=98.57 E-value=1.3e-06 Score=103.11 Aligned_cols=120 Identities=20% Similarity=0.287 Sum_probs=96.5
Q ss_pred ceEEEccceEEECCEEeEEEEEEeeCCC-----CC-cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHH
Q 006681 37 ASVSYDHKAVIINGQKRILISGSIHYPR-----ST-PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLV 110 (635)
Q Consensus 37 ~~Vt~d~~~l~idGkr~~l~sG~iHY~R-----~~-pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~ 110 (635)
++|+++...|.|||||+++-+..-|.+- .. .+.-+++|++||++|+|+|+|- |-|. =.
T Consensus 284 R~iei~~~~~~iNGkpvf~kGvnrHe~~~~~G~~~~~~~~~~dl~lmk~~n~N~vRts-----HyP~-----------~~ 347 (808)
T COG3250 284 RTVEIKDGLLLINGKPVFIRGVNRHEDDPILGRVTDEDAMERDLKLMKEANMNSVRTS-----HYPN-----------SE 347 (808)
T ss_pred EEEEEECCeEEECCeEEEEeeeecccCCCccccccCHHHHHHHHHHHHHcCCCEEEec-----CCCC-----------CH
Confidence 4589999999999999999999999533 34 4448899999999999999994 6665 36
Q ss_pred HHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEe
Q 006681 111 RFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (635)
Q Consensus 111 ~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~ 190 (635)
+|++||.+.||+|+-.+ ..||.. .| +++.|++.+..=+++++++.|+|| .||++
T Consensus 348 ~~ydLcDelGllV~~Ea----~~~~~~--~~-------------~~~~~~k~~~~~i~~mver~knHP-------SIiiW 401 (808)
T COG3250 348 EFYDLCDELGLLVIDEA----MIETHG--MP-------------DDPEWRKEVSEEVRRMVERDRNHP-------SIIIW 401 (808)
T ss_pred HHHHHHHHhCcEEEEec----chhhcC--CC-------------CCcchhHHHHHHHHHHHHhccCCC-------cEEEE
Confidence 89999999999999884 223322 11 788898888887788888777655 89999
Q ss_pred ccccccCC
Q 006681 191 QIENEFGP 198 (635)
Q Consensus 191 QIENEyg~ 198 (635)
=+-||-|.
T Consensus 402 s~gNE~~~ 409 (808)
T COG3250 402 SLGNESGH 409 (808)
T ss_pred eccccccC
Confidence 99999774
No 13
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. This domain has a jelly-roll fold [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3DEC_A 3OB8_A 3OBA_A 3CMG_A 3FN9_C 2VZU_A 2X09_A 2VZO_A 2X05_A 2VZV_B ....
Probab=98.22 E-value=1.5e-05 Score=75.90 Aligned_cols=104 Identities=23% Similarity=0.292 Sum_probs=76.1
Q ss_pred hhhccCcccceeEEEeEEEeCCCcccccCCCCceEEEeecccEEEEEEcCeecccccchhhHhHhhcccccccccccccc
Q 006681 470 QVYLTADASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFY 549 (635)
Q Consensus 470 q~~~T~D~sDYlWY~T~v~~~~~~~~~~~~~~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (635)
+...+...+.+.||.+.|+++++. .++...|++.+..+...|||||+++
T Consensus 59 ~~~~~~~~~~~~wYr~~f~lp~~~----~~~~~~L~f~gv~~~a~v~vNG~~v--------------------------- 107 (167)
T PF02837_consen 59 GDPELWDYSGYAWYRRTFTLPADW----KGKRVFLRFEGVDYAAEVYVNGKLV--------------------------- 107 (167)
T ss_dssp TGCCTSTCCSEEEEEEEEEESGGG----TTSEEEEEESEEESEEEEEETTEEE---------------------------
T ss_pred ccccccccCceEEEEEEEEeCchh----cCceEEEEeccceEeeEEEeCCeEE---------------------------
Confidence 456677789999999999998654 3578899999999999999999999
Q ss_pred CCceeeeccCCCCceEEEeeeeecCce-eEEEEEEeecccccc-cccceeeeceeeeeEEEe
Q 006681 550 PYAGTVYGSLENPKLTFSKNVKLRPGV-NKISLLSTSVGLPNV-GTHFEKWNAGVLGPVTLK 609 (635)
Q Consensus 550 ~~~g~~~g~~~~~~~~~~~~v~l~~G~-n~islLs~tvGl~n~-G~~~e~~~aGi~g~V~l~ 609 (635)
|+..+.. ..|.|+..-.|++|. |.|++.-....-... ....-...+||.+||.|.
T Consensus 108 ---g~~~~~~--~~~~~dIt~~l~~g~~N~l~V~v~~~~~~~~~~~~~~~~~~GI~r~V~L~ 164 (167)
T PF02837_consen 108 ---GSHEGGY--TPFEFDITDYLKPGEENTLAVRVDNWPDGSTIPGFDYFNYAGIWRPVWLE 164 (167)
T ss_dssp ---EEEESTT--S-EEEECGGGSSSEEEEEEEEEEESSSGGGCGBSSSEEE--EEESEEEEE
T ss_pred ---eeeCCCc--CCeEEeChhhccCCCCEEEEEEEeecCCCceeecCcCCccCccccEEEEE
Confidence 7766543 346666666799999 999998873221111 012233469999999984
No 14
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=98.10 E-value=1.1e-05 Score=83.10 Aligned_cols=117 Identities=20% Similarity=0.324 Sum_probs=89.3
Q ss_pred cCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHH
Q 006681 91 WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKI 170 (635)
Q Consensus 91 Wn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I 170 (635)
|...||+||+|||+ .++++++.|+++||.| |..+-+ |.. ..|.|+...+ .+..++++++|++++
T Consensus 3 W~~~ep~~G~~n~~---~~D~~~~~a~~~gi~v--~gH~l~---W~~-~~P~W~~~~~-------~~~~~~~~~~~i~~v 66 (254)
T smart00633 3 WDSTEPSRGQFNFS---GADAIVNFAKENGIKV--RGHTLV---WHS-QTPDWVFNLS-------KETLLARLENHIKTV 66 (254)
T ss_pred cccccCCCCccChH---HHHHHHHHHHHCCCEE--EEEEEe---ecc-cCCHhhhcCC-------HHHHHHHHHHHHHHH
Confidence 88999999999999 8999999999999998 333322 433 6899997543 345677888888888
Q ss_pred HHHhhhccccccCCCcEEEeccccccCCccc------c-CCCChHHHHHHHHHHHhhcCCccceEeecC
Q 006681 171 VSMMKAEKLFQTQGGPIILSQIENEFGPVEW------D-IGAPGKAYAKWAAQMAVGLNTGVPWVMCKQ 232 (635)
Q Consensus 171 ~~~ik~~~l~~~~GGpII~~QIENEyg~~~~------~-~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~~ 232 (635)
+.+++ |.|..++|=||--+... . +...|..|+..+-+.|++.+.++.+++++.
T Consensus 67 ~~ry~---------g~i~~wdV~NE~~~~~~~~~~~~~w~~~~G~~~i~~af~~ar~~~P~a~l~~Ndy 126 (254)
T smart00633 67 VGRYK---------GKIYAWDVVNEALHDNGSGLRRSVWYQILGEDYIEKAFRYAREADPDAKLFYNDY 126 (254)
T ss_pred HHHhC---------CcceEEEEeeecccCCCcccccchHHHhcChHHHHHHHHHHHHhCCCCEEEEecc
Confidence 88776 56889999999543210 0 122456899888899999998999988754
No 15
>PLN02705 beta-amylase
Probab=97.89 E-value=3.3e-05 Score=87.30 Aligned_cols=112 Identities=17% Similarity=0.270 Sum_probs=80.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEceecCccCC-cCCcccccChhhHHHHHHHHHHcCcEEE--EecCceeeeecCCC-----
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG----- 138 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-~~G~ydF~G~~dL~~Fl~la~e~GL~Vi--LR~GPYIcAEw~~G----- 138 (635)
++.-+..|+++|++|++-|.+-|.|...|. .|++|||+| ..+++++|+++||++. |.+ --|+- |-|
T Consensus 267 ~~al~a~L~aLK~aGVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~L~~mvr~~GLKlqvVmSF--HqCGG-NVGD~~~I 340 (681)
T PLN02705 267 PEGVRQELSHMKSLNVDGVVVDCWWGIVEGWNPQKYVWSG---YRELFNIIREFKLKLQVVMAF--HEYGG-NASGNVMI 340 (681)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeEeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--eccCC-CCCCcccc
Confidence 344677899999999999999999999998 699999996 6677999999999964 553 33444 222
Q ss_pred CCCccccc----CCCcccc------------------------cCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEe
Q 006681 139 GFPVWLKY----VPGIEFR------------------------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (635)
Q Consensus 139 G~P~WL~~----~p~i~~R------------------------t~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~ 190 (635)
-+|.|+.+ +|+|.+. |--+.|.+.|+.|=....+.| .+|.|.-+
T Consensus 341 PLP~WV~e~g~~nPDifftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl--------~~g~I~eI 412 (681)
T PLN02705 341 SLPQWVLEIGKDNQDIFFTDREGRRNTECLSWSIDKERVLKGRTGIEVYFDFMRSFRSEFDDLF--------VEGLITAV 412 (681)
T ss_pred cCCHHHHHhcccCCCceeecCCCCcccceeeeecCcccccCCCCHHHHHHHHHHHHHHHHHHhc--------cCCceeEE
Confidence 28999976 4776441 112346666666655544433 24688888
Q ss_pred cc
Q 006681 191 QI 192 (635)
Q Consensus 191 QI 192 (635)
||
T Consensus 413 ~V 414 (681)
T PLN02705 413 EI 414 (681)
T ss_pred Ee
Confidence 88
No 16
>PLN02905 beta-amylase
Probab=97.87 E-value=4.3e-05 Score=86.69 Aligned_cols=111 Identities=19% Similarity=0.366 Sum_probs=80.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCC-cCCcccccChhhHHHHHHHHHHcCcEEE--EecCceeeeecCCC-----C
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG-----G 139 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-~~G~ydF~G~~dL~~Fl~la~e~GL~Vi--LR~GPYIcAEw~~G-----G 139 (635)
+.-+..|+++|++|++-|.+-|.|...|. .|++|||+| ..+++++|+++||++. +.+ --|+- |-| -
T Consensus 286 ~al~a~L~aLK~aGVdGVmvDVWWGiVE~~gP~~YdWsg---Y~~L~~mvr~~GLKlqvVMSF--HqCGG-NVGD~~~IP 359 (702)
T PLN02905 286 DGLLKQLRILKSINVDGVKVDCWWGIVEAHAPQEYNWNG---YKRLFQMVRELKLKLQVVMSF--HECGG-NVGDDVCIP 359 (702)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 34567899999999999999999999998 799999996 6677999999999965 543 23433 222 3
Q ss_pred CCccccc----CCCcccc------------------------cCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 006681 140 FPVWLKY----VPGIEFR------------------------TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (635)
Q Consensus 140 ~P~WL~~----~p~i~~R------------------------t~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q 191 (635)
+|.|+.+ +|+|.+. |--+.|.+.|+.|-....+.|. +|.|.-+|
T Consensus 360 LP~WV~e~g~~nPDifftDrsG~rn~EyLSlg~D~~pvl~GRTplq~Y~DFM~SFr~~F~~fl~--------~g~I~eI~ 431 (702)
T PLN02905 360 LPHWVAEIGRSNPDIFFTDREGRRNPECLSWGIDKERILRGRTALEVYFDYMRSFRVEFDEFFE--------DGVISMVE 431 (702)
T ss_pred CCHHHHHhhhcCCCceEecCCCCccCceeeeecccccccCCCCHHHHHHHHHHHHHHHHHHHhc--------CCceEEEE
Confidence 8999976 5776441 1124566666666555544442 36788888
Q ss_pred c
Q 006681 192 I 192 (635)
Q Consensus 192 I 192 (635)
|
T Consensus 432 V 432 (702)
T PLN02905 432 V 432 (702)
T ss_pred e
Confidence 8
No 17
>PLN02801 beta-amylase
Probab=97.86 E-value=4.4e-05 Score=85.10 Aligned_cols=81 Identities=25% Similarity=0.491 Sum_probs=63.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCC-cCCcccccChhhHHHHHHHHHHcCcEEE--EecCceeeeecCCC----
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG---- 138 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-~~G~ydF~G~~dL~~Fl~la~e~GL~Vi--LR~GPYIcAEw~~G---- 138 (635)
.++.-+..|+++|++|++.|.+-|.|...|. .|++|||+| -.++.++|+++||++. +.+ --|+- |-|
T Consensus 35 ~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~ 108 (517)
T PLN02801 35 DEEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSA---YRSLFELVQSFGLKIQAIMSF--HQCGG-NVGDAVN 108 (517)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 4556788999999999999999999999998 599999996 6677999999999964 543 23333 222
Q ss_pred -CCCccccc----CCCccc
Q 006681 139 -GFPVWLKY----VPGIEF 152 (635)
Q Consensus 139 -G~P~WL~~----~p~i~~ 152 (635)
-+|.|+.+ +|++.+
T Consensus 109 IpLP~WV~~~g~~~pDi~f 127 (517)
T PLN02801 109 IPIPQWVRDVGDSDPDIFY 127 (517)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999975 577643
No 18
>PLN02161 beta-amylase
Probab=97.86 E-value=4.9e-05 Score=84.72 Aligned_cols=81 Identities=19% Similarity=0.365 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCC-cCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCC-----CCC
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYG-----GFP 141 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~G-----G~P 141 (635)
+.-...|+++|++|++.|.+-|.|...|. .|++|||+| ..+++++|++.||++..-.-=--|+- |-| -+|
T Consensus 117 ~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSFHqCGG-NvGd~~~IpLP 192 (531)
T PLN02161 117 KALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSL---YEELFRLISEAGLKLHVALCFHSNMH-LFGGKGGISLP 192 (531)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEecccCC-CCCCccCccCC
Confidence 34567899999999999999999999998 799999996 66779999999999653322233333 222 289
Q ss_pred ccccc----CCCccc
Q 006681 142 VWLKY----VPGIEF 152 (635)
Q Consensus 142 ~WL~~----~p~i~~ 152 (635)
.|+.+ +|+|.+
T Consensus 193 ~WV~~~g~~~pDi~f 207 (531)
T PLN02161 193 LWIREIGDVNKDIYY 207 (531)
T ss_pred HHHHhhhccCCCceE
Confidence 99975 577754
No 19
>PLN00197 beta-amylase; Provisional
Probab=97.86 E-value=4.5e-05 Score=85.65 Aligned_cols=81 Identities=22% Similarity=0.482 Sum_probs=64.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCC-cCCcccccChhhHHHHHHHHHHcCcEEE--EecCceeeeecCCC----
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG---- 138 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-~~G~ydF~G~~dL~~Fl~la~e~GL~Vi--LR~GPYIcAEw~~G---- 138 (635)
.++.-+..|+++|++|++-|.+-|.|...|. .|++|||+| ..+++++|+++||++. +.+ --|+- |-|
T Consensus 125 ~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsg---Y~~L~~mvr~~GLKlq~VmSF--HqCGG-NVGD~~~ 198 (573)
T PLN00197 125 RRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGG---YNELLEMAKRHGLKVQAVMSF--HQCGG-NVGDSCT 198 (573)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccc
Confidence 3455788999999999999999999999998 799999996 6677999999999965 543 23433 222
Q ss_pred -CCCccccc----CCCccc
Q 006681 139 -GFPVWLKY----VPGIEF 152 (635)
Q Consensus 139 -G~P~WL~~----~p~i~~ 152 (635)
-+|.|+.+ +|+|.+
T Consensus 199 IpLP~WV~~~g~~dpDiff 217 (573)
T PLN00197 199 IPLPKWVVEEVDKDPDLAY 217 (573)
T ss_pred ccCCHHHHHhhccCCCcee
Confidence 38999976 577644
No 20
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=97.84 E-value=0.00026 Score=75.29 Aligned_cols=128 Identities=13% Similarity=0.147 Sum_probs=76.6
Q ss_pred cccceEEEccceEE--ECCEEeEEEEEEeeCCC-----------CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCc
Q 006681 34 FVKASVSYDHKAVI--INGQKRILISGSIHYPR-----------STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN 100 (635)
Q Consensus 34 ~~~~~Vt~d~~~l~--idGkr~~l~sG~iHY~R-----------~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ 100 (635)
++-..|+..++.|+ -+|+||++.+-.+.+.. ..++.|+.++..||++|+|||++|-.
T Consensus 6 ~~~~pI~ikG~kff~~~~g~~F~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~v---------- 75 (314)
T PF03198_consen 6 AAVPPIEIKGNKFFYSKNGTRFFIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSV---------- 75 (314)
T ss_dssp TTS--EEEETTEEEETTT--B--EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES------------
T ss_pred ccCCCEEEECCEeEECCCCCEEEEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEe----------
Confidence 33466899999998 78899888876655422 34688999999999999999999732
Q ss_pred ccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCCh--hhHHHHHHHHHHHHHHhhhcc
Q 006681 101 YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNG--PFKAAMHKFTEKIVSMMKAEK 178 (635)
Q Consensus 101 ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~--~f~~~~~~~~~~I~~~ik~~~ 178 (635)
+-..|=++++++.+++|+||||..+. |+..+..++| .|-...-.-+.++++.+++++
T Consensus 76 ---dp~~nHd~CM~~~~~aGIYvi~Dl~~------------------p~~sI~r~~P~~sw~~~l~~~~~~vid~fa~Y~ 134 (314)
T PF03198_consen 76 ---DPSKNHDECMSAFADAGIYVILDLNT------------------PNGSINRSDPAPSWNTDLLDRYFAVIDAFAKYD 134 (314)
T ss_dssp ----TTS--HHHHHHHHHTT-EEEEES-B------------------TTBS--TTS------HHHHHHHHHHHHHHTT-T
T ss_pred ---CCCCCHHHHHHHHHhCCCEEEEecCC------------------CCccccCCCCcCCCCHHHHHHHHHHHHHhccCC
Confidence 22247789999999999999999752 2333444445 454433334455777777443
Q ss_pred ccccCCCcEEEeccccccCCc
Q 006681 179 LFQTQGGPIILSQIENEFGPV 199 (635)
Q Consensus 179 l~~~~GGpII~~QIENEyg~~ 199 (635)
+++++=+-||--+-
T Consensus 135 -------N~LgFf~GNEVin~ 148 (314)
T PF03198_consen 135 -------NTLGFFAGNEVIND 148 (314)
T ss_dssp -------TEEEEEEEESSS-S
T ss_pred -------ceEEEEecceeecC
Confidence 79999999998653
No 21
>PLN02803 beta-amylase
Probab=97.81 E-value=5.9e-05 Score=84.48 Aligned_cols=79 Identities=18% Similarity=0.451 Sum_probs=62.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCC-cCCcccccChhhHHHHHHHHHHcCcEEE--EecCceeeeecCCC-----C
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEP-TQGNYYFQDRYDLVRFIKLVQQAGLYVH--LRIGPYVCAEWNYG-----G 139 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-~~G~ydF~G~~dL~~Fl~la~e~GL~Vi--LR~GPYIcAEw~~G-----G 139 (635)
+.-+..|+++|++|++-|.+-|.|...|. .|++|||+| ..+++++|+++||++. +.+ --|+- |-| -
T Consensus 107 ~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsg---Y~~l~~mvr~~GLKlq~vmSF--HqCGG-NVGD~~~Ip 180 (548)
T PLN02803 107 RAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEG---YAELVQMVQKHGLKLQVVMSF--HQCGG-NVGDSCSIP 180 (548)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHH---HHHHHHHHHHcCCeEEEEEEe--cccCC-CCCCccccc
Confidence 44567899999999999999999999998 599999996 6677999999999965 543 23433 222 2
Q ss_pred CCccccc----CCCccc
Q 006681 140 FPVWLKY----VPGIEF 152 (635)
Q Consensus 140 ~P~WL~~----~p~i~~ 152 (635)
+|.|+.+ +|+|.+
T Consensus 181 LP~WV~e~~~~~pDi~f 197 (548)
T PLN02803 181 LPPWVLEEMSKNPDLVY 197 (548)
T ss_pred CCHHHHHhhhcCCCceE
Confidence 8999976 577754
No 22
>TIGR03356 BGL beta-galactosidase.
Probab=97.75 E-value=7.6e-05 Score=82.76 Aligned_cols=97 Identities=13% Similarity=0.124 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|+++|+.||++|+|+++.-|.|...+|. +|++|.+|-...+++|+.|.++||.+++-.= .-.+|.||.+
T Consensus 54 ~~y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~--------Hfd~P~~l~~ 125 (427)
T TIGR03356 54 HRYEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLY--------HWDLPQALED 125 (427)
T ss_pred HhHHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeec--------cCCccHHHHh
Confidence 468999999999999999999999999999 7999999999999999999999999886641 2358999986
Q ss_pred CCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 147 ~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
..|- .++...++..+|.+.+++++++
T Consensus 126 ~gGw----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 RGGW----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred cCCC----CChHHHHHHHHHHHHHHHHhCC
Confidence 5443 3455666667777777777763
No 23
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=97.53 E-value=0.0019 Score=68.22 Aligned_cols=224 Identities=20% Similarity=0.277 Sum_probs=108.5
Q ss_pred cceEE-ECCEEeEEEEEEeeC---CCCCcccHHHHHHHHHHCCCCEEEEcee--cCcc--------CCc----CCccccc
Q 006681 43 HKAVI-INGQKRILISGSIHY---PRSTPEMWPDLIQKAKDGGLDVIQTYVF--WNGH--------EPT----QGNYYFQ 104 (635)
Q Consensus 43 ~~~l~-idGkr~~l~sG~iHY---~R~~pe~W~d~l~k~Ka~GlN~I~tYVf--Wn~H--------EP~----~G~ydF~ 104 (635)
+|.|. -||+||+.++ .-.+ .|...++|+..|+..|+-|+|+|++=++ |..+ .|- ++++||+
T Consensus 2 ~r~f~~~dG~Pff~lg-dT~W~~~~~~~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~n~~~~~~~~~~~~~~~d~~ 80 (289)
T PF13204_consen 2 GRHFVYADGTPFFWLG-DTAWSLFHRLTREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTPNRYGFAPFPDEDPGQFDFT 80 (289)
T ss_dssp SSSEEETTS-B--EEE-EE-TTHHHH--HHHHHHHHHHHHHTT--EEEEES-SSSS-B----TTS-BS-SSTT------T
T ss_pred CceEecCCCCEEeehh-HHHHHHhhCCCHHHHHHHHHHHHHCCCCEEEEEeCCCcccccccccCCCcCCCCCCccccCCC
Confidence 46666 7999999998 4443 3578899999999999999999999776 4422 121 1236766
Q ss_pred Ch-----hhHHHHHHHHHHcCcEEEEe---cCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 105 DR-----YDLVRFIKLVQQAGLYVHLR---IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 105 G~-----~dL~~Fl~la~e~GL~ViLR---~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
.- ..|++.|+.+.+.||.+.|- -+||.-+-|-.| |..+ =.+.+++|.+.|+++++.
T Consensus 81 ~~N~~YF~~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~--~~~m--------------~~e~~~~Y~~yv~~Ry~~ 144 (289)
T PF13204_consen 81 RPNPAYFDHLDRRIEKANELGIEAALVPFWGCPYVPGTWGFG--PNIM--------------PPENAERYGRYVVARYGA 144 (289)
T ss_dssp T----HHHHHHHHHHHHHHTT-EEEEESS-HHHHH---------TTSS---------------HHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCeEEEEEEECCcccccccccc--ccCC--------------CHHHHHHHHHHHHHHHhc
Confidence 43 47999999999999997543 234544445443 1111 136688999999999995
Q ss_pred ccccccCCCcEEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCccceEee--cCC-CCCC-----cccc--CC-CC
Q 006681 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTGVPWVMC--KQD-DAPD-----PVIN--TC-NG 245 (635)
Q Consensus 177 ~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c--~~~-d~p~-----~vi~--t~-nG 245 (635)
.+ +|| +=|-||+ . ......++.+.+++..++.+-.- +++. .+. ..|+ |-++ .+ .|
T Consensus 145 ~~-------Nvi-W~l~gd~-~----~~~~~~~~w~~~~~~i~~~dp~~-L~T~H~~~~~~~~~~~~~~~Wldf~~~Qsg 210 (289)
T PF13204_consen 145 YP-------NVI-WILGGDY-F----DTEKTRADWDAMARGIKENDPYQ-LITIHPCGRTSSPDWFHDEPWLDFNMYQSG 210 (289)
T ss_dssp -S-------SEE-EEEESSS-------TTSSHHHHHHHHHHHHHH--SS--EEEEE-BTEBTHHHHTT-TT--SEEEB--
T ss_pred CC-------CCE-EEecCcc-C----CCCcCHHHHHHHHHHHHhhCCCC-cEEEeCCCCCCcchhhcCCCcceEEEeecC
Confidence 43 355 5588888 1 22345666666666666554332 3221 111 1111 1111 11 12
Q ss_pred ccc------c----ccc-cCCCCCCceeeec-ccccccccCCCCCCCChHHHHHHHHHHHHhCC
Q 006681 246 FYC------E----KFV-PNQNYKPKMWTEA-WTGWFTEFGSAVPTRPAEDLVFSVARFIQSGG 297 (635)
Q Consensus 246 ~~c------d----~f~-~~~~~~P~~~tE~-w~Gwf~~wG~~~~~r~~ed~a~~v~~~l~~gg 297 (635)
-.. + .+. ...|.||.+..|- +.|--..+.+.....+++|+-...=+-+-+|+
T Consensus 211 h~~~~~~~~~~~~~~~~~~~~p~KPvin~Ep~YEg~~~~~~~~~~~~~~~dvrr~aw~svlaGa 274 (289)
T PF13204_consen 211 HNRYDQDNWYYLPEEFDYRRKPVKPVINGEPCYEGIPYSRWGYNGRFSAEDVRRRAWWSVLAGA 274 (289)
T ss_dssp S--TT--THHHH--HHHHTSSS---EEESS---BT-BTTSS-TS-B--HHHHHHHHHHHHHCT-
T ss_pred CCcccchHHHHHhhhhhhhhCCCCCEEcCcccccCCCCCcCcccCCCCHHHHHHHHHHHHhcCC
Confidence 111 0 111 4568999999983 33333222223345578887765544455565
No 24
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=97.20 E-value=0.00054 Score=75.15 Aligned_cols=114 Identities=16% Similarity=0.255 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeee----cCCCCCCcc
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE----WNYGGFPVW 143 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAE----w~~GG~P~W 143 (635)
.-+..|+++|++|++.|.+.|.|...|.. |++|||+| -.++.++|++.||++..-.-=--|+- .-+=-+|.|
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~---Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W 93 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSG---YRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW 93 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HH---HHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHH---HHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH
Confidence 34678999999999999999999999997 99999996 67889999999999754321122321 111137999
Q ss_pred ccc---CCCcccccC--------------ChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEecc
Q 006681 144 LKY---VPGIEFRTD--------------NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQI 192 (635)
Q Consensus 144 L~~---~p~i~~Rt~--------------n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QI 192 (635)
+.+ ..+|.+... ... ++.-+.|++...+.++ +++ +.|..+||
T Consensus 94 v~~~~~~~di~ytd~~G~rn~E~lSp~~~grt-~~~Y~dfm~sF~~~f~--~~~----~~I~~I~v 152 (402)
T PF01373_consen 94 VWEIGKKDDIFYTDRSGNRNKEYLSPVLDGRT-LQCYSDFMRSFRDNFS--DYL----STITEIQV 152 (402)
T ss_dssp HHHHHHHSGGEEE-TTS-EEEEEE-CTBTTBC-HHHHHHHHHHHHHHCH--HHH----TGEEEEEE
T ss_pred HHhccccCCcEEECCCCCcCcceeecccCCch-HHHHHHHHHHHHHHHH--HHH----hhheEEEe
Confidence 974 124422110 112 3333445555555565 332 57888887
No 25
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=96.87 E-value=0.0014 Score=70.05 Aligned_cols=157 Identities=15% Similarity=0.239 Sum_probs=107.7
Q ss_pred EEEEEeeCCCCCcc-cHHHHHHHHHHCCCCEEEEc--eecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCcee
Q 006681 55 LISGSIHYPRSTPE-MWPDLIQKAKDGGLDVIQTY--VFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (635)
Q Consensus 55 l~sG~iHY~R~~pe-~W~d~l~k~Ka~GlN~I~tY--VfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYI 131 (635)
.++..++..+...+ ..++ +-..-+|.|..- .-|...||.+|+|||+ ..+++++.|+++||.|--.+ -+
T Consensus 11 ~~G~av~~~~~~~~~~~~~----~~~~~Fn~~t~eN~~Kw~~~e~~~g~~~~~---~~D~~~~~a~~~g~~vrGH~--Lv 81 (320)
T PF00331_consen 11 PFGAAVNAQQLEDDPRYRE----LFAKHFNSVTPENEMKWGSIEPEPGRFNFE---SADAILDWARENGIKVRGHT--LV 81 (320)
T ss_dssp EEEEEEBGGGHTHHHHHHH----HHHHH-SEEEESSTTSHHHHESBTTBEE-H---HHHHHHHHHHHTT-EEEEEE--EE
T ss_pred CEEEEechhHcCCcHHHHH----HHHHhCCeeeeccccchhhhcCCCCccCcc---chhHHHHHHHhcCcceeeee--EE
Confidence 68888888775544 4444 444568888774 6699999999999999 89999999999999985221 11
Q ss_pred eeecCCCCCCcccccCCCcccccC-ChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccc---------
Q 006681 132 CAEWNYGGFPVWLKYVPGIEFRTD-NGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW--------- 201 (635)
Q Consensus 132 cAEw~~GG~P~WL~~~p~i~~Rt~-n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~--------- 201 (635)
|.. ..|.|+...+.. ... .+..++.+++++++++.++++. |.|..+-|=||-=....
T Consensus 82 ---W~~-~~P~w~~~~~~~--~~~~~~~~~~~l~~~I~~v~~~y~~~-------g~i~~WDVvNE~i~~~~~~~~~r~~~ 148 (320)
T PF00331_consen 82 ---WHS-QTPDWVFNLANG--SPDEKEELRARLENHIKTVVTRYKDK-------GRIYAWDVVNEAIDDDGNPGGLRDSP 148 (320)
T ss_dssp ---ESS-SS-HHHHTSTTS--SBHHHHHHHHHHHHHHHHHHHHTTTT-------TTESEEEEEES-B-TTSSSSSBCTSH
T ss_pred ---Ecc-cccceeeeccCC--CcccHHHHHHHHHHHHHHHHhHhccc-------cceEEEEEeeecccCCCccccccCCh
Confidence 433 789999875110 000 1247888999999988887721 78999999999633211
Q ss_pred cCCCChHHHHHHHHHHHhhcCCccceEeecCC
Q 006681 202 DIGAPGKAYAKWAAQMAVGLNTGVPWVMCKQD 233 (635)
Q Consensus 202 ~~~~~~~~Y~~wl~~~a~~~g~~VPwi~c~~~ 233 (635)
-+...|..|+..+-++|++...++.++.++..
T Consensus 149 ~~~~lG~~yi~~aF~~A~~~~P~a~L~~NDy~ 180 (320)
T PF00331_consen 149 WYDALGPDYIADAFRAAREADPNAKLFYNDYN 180 (320)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred hhhcccHhHHHHHHHHHHHhCCCcEEEecccc
Confidence 01223567888888889988888888888753
No 26
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=96.78 E-value=0.00078 Score=75.21 Aligned_cols=96 Identities=15% Similarity=0.194 Sum_probs=72.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~ 145 (635)
..|+++|+.||++|+|+-+.-+-|...+|. +|++|-+|-.--+++|+.+.++||..++-. -.-.+|.||.
T Consensus 58 ~~y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL--------~H~~~P~~l~ 129 (455)
T PF00232_consen 58 HRYKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTL--------YHFDLPLWLE 129 (455)
T ss_dssp HHHHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEE--------ESS--BHHHH
T ss_pred hhhhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeee--------eeccccccee
Confidence 458999999999999999999999999999 699999999999999999999999976552 3567999998
Q ss_pred cCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 146 ~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+.-|- .|+...+...+|.+.+++.+.
T Consensus 130 ~~ggw----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 130 DYGGW----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp HHTGG----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ecccc----cCHHHHHHHHHHHHHHHHHhC
Confidence 74443 235555666666666666666
No 27
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.0077 Score=66.52 Aligned_cols=115 Identities=16% Similarity=0.161 Sum_probs=73.2
Q ss_pred CcccH-----HHHHHHHHHCCCCEEEEceecCccCCcC--Ccccc--cChhhHHHHHHHHHHcCcEEEEec----Cceee
Q 006681 66 TPEMW-----PDLIQKAKDGGLDVIQTYVFWNGHEPTQ--GNYYF--QDRYDLVRFIKLVQQAGLYVHLRI----GPYVC 132 (635)
Q Consensus 66 ~pe~W-----~d~l~k~Ka~GlN~I~tYVfWn~HEP~~--G~ydF--~G~~dL~~Fl~la~e~GL~ViLR~----GPYIc 132 (635)
...-| ++.+..||.+|+|+||+++.|..+++.. .-|-. +--.-|++.|+-|++.||+|+|-. |.-.|
T Consensus 66 ~~~~w~~~~~~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~ 145 (407)
T COG2730 66 LESHWGNFITEEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNG 145 (407)
T ss_pred chhccchhhhhhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCC
Confidence 45567 8999999999999999999954445543 22222 211378999999999999999883 22222
Q ss_pred eecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCC
Q 006681 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (635)
Q Consensus 133 AEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~ 198 (635)
-| ..|.... . +...+..++..+..+.|+.+.+ +.-.||++|+=||.-.
T Consensus 146 ~~------~s~~~~~--~---~~~~~~~~~~~~~w~~ia~~f~-------~~~~VIg~~~~NEP~~ 193 (407)
T COG2730 146 HE------HSGYTSD--Y---KEENENVEATIDIWKFIANRFK-------NYDTVIGFELINEPNG 193 (407)
T ss_pred cC------ccccccc--c---cccchhHHHHHHHHHHHHHhcc-------CCCceeeeeeecCCcc
Confidence 11 1222111 0 0022334444555556666665 2458999999999864
No 28
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=96.59 E-value=0.01 Score=64.11 Aligned_cols=104 Identities=27% Similarity=0.460 Sum_probs=68.5
Q ss_pred HHHHHHHHHCCCCEEEEceecCccCCcC-CcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCC
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPG 149 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn~HEP~~-G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~ 149 (635)
+|.++-+|+.|+|.|+.=| |+ .|.. |..|.+ +..+..+-|+++||.|+|.+- |- -.|- +|+
T Consensus 27 ~d~~~ilk~~G~N~vRlRv-wv--~P~~~g~~~~~---~~~~~akrak~~Gm~vlldfH-YS---------D~Wa--DPg 88 (332)
T PF07745_consen 27 KDLFQILKDHGVNAVRLRV-WV--NPYDGGYNDLE---DVIALAKRAKAAGMKVLLDFH-YS---------DFWA--DPG 88 (332)
T ss_dssp --HHHHHHHTT--EEEEEE--S--S-TTTTTTSHH---HHHHHHHHHHHTT-EEEEEE--SS---------SS----BTT
T ss_pred CCHHHHHHhcCCCeEEEEe-cc--CCcccccCCHH---HHHHHHHHHHHCCCeEEEeec-cc---------CCCC--CCC
Confidence 5899999999999999988 54 5555 766666 777888888999999999863 11 1222 233
Q ss_pred ccc-----cc-CChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCC
Q 006681 150 IEF-----RT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (635)
Q Consensus 150 i~~-----Rt-~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~ 198 (635)
-+. +. +-..-.+++..|++.+++.|++ +|=.+=||||-||...
T Consensus 89 ~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~------~G~~pd~VQVGNEin~ 137 (332)
T PF07745_consen 89 KQNKPAAWANLSFDQLAKAVYDYTKDVLQALKA------AGVTPDMVQVGNEINN 137 (332)
T ss_dssp B-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHH------TT--ESEEEESSSGGG
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHH------CCCCccEEEeCccccc
Confidence 211 11 2356778999999999999994 4556789999999743
No 29
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=96.55 E-value=0.0037 Score=70.50 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
.|+++|+.||++|+|+-+.-+-|....|. +|++|-+|-...+++|+.+.++||..++-. -+=.+|.||.+
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL--------~H~dlP~~L~~ 141 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITL--------SHFEMPLHLVQ 141 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHHH
Confidence 58999999999999999999999999997 677898999999999999999999877653 24468999976
Q ss_pred C-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 147 ~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
. -|- .|+...++-.+|.+.+++.++
T Consensus 142 ~yGGW----~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 142 QYGSW----TNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred hcCCC----CChHHHHHHHHHHHHHHHHhc
Confidence 4 333 344445555555555555555
No 30
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.018 Score=61.75 Aligned_cols=133 Identities=18% Similarity=0.277 Sum_probs=101.6
Q ss_pred HHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCC
Q 006681 77 AKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDN 156 (635)
Q Consensus 77 ~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n 156 (635)
+|+.+.=|-+.=.=|+..||++|.|+|+ --++..+.|+++||.+.-- +-| |.+ -.|.|+..+. -.-
T Consensus 55 ~re~n~iTpenemKwe~i~p~~G~f~Fe---~AD~ia~FAr~h~m~lhGH--tLv---W~~-q~P~W~~~~e-----~~~ 120 (345)
T COG3693 55 ARECNQITPENEMKWEAIEPERGRFNFE---AADAIANFARKHNMPLHGH--TLV---WHS-QVPDWLFGDE-----LSK 120 (345)
T ss_pred HhhhcccccccccccccccCCCCccCcc---chHHHHHHHHHcCCeeccc--eee---ecc-cCCchhhccc-----cCh
Confidence 5666665666666799999999999999 5788999999999976421 122 433 6899997643 234
Q ss_pred hhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccc-------cCCCChHHHHHHHHHHHhhcCCccceEe
Q 006681 157 GPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-------DIGAPGKAYAKWAAQMAVGLNTGVPWVM 229 (635)
Q Consensus 157 ~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~-------~~~~~~~~Y~~wl~~~a~~~g~~VPwi~ 229 (635)
++..+.|++++..++.+.| |-|+.|-|=||--.-+. ..+-.+.+|+++.=+.|++.+-+--++.
T Consensus 121 ~~~~~~~e~hI~tV~~rYk---------g~~~sWDVVNE~vdd~g~~R~s~w~~~~~gpd~I~~aF~~AreadP~AkL~~ 191 (345)
T COG3693 121 EALAKMVEEHIKTVVGRYK---------GSVASWDVVNEAVDDQGSLRRSAWYDGGTGPDYIKLAFHIAREADPDAKLVI 191 (345)
T ss_pred HHHHHHHHHHHHHHHHhcc---------CceeEEEecccccCCCchhhhhhhhccCCccHHHHHHHHHHHhhCCCceEEe
Confidence 6788999999999999888 45899999999744221 1235688999999999999888877888
Q ss_pred ecC
Q 006681 230 CKQ 232 (635)
Q Consensus 230 c~~ 232 (635)
++.
T Consensus 192 NDY 194 (345)
T COG3693 192 NDY 194 (345)
T ss_pred ecc
Confidence 765
No 31
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=96.34 E-value=0.014 Score=71.56 Aligned_cols=93 Identities=22% Similarity=0.307 Sum_probs=68.8
Q ss_pred eEEEeEEEeCCCcccccCCCCceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeeeccCC
Q 006681 481 LWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLE 560 (635)
Q Consensus 481 lWY~T~v~~~~~~~~~~~~~~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~ 560 (635)
.||.+.|.++++- .|++..|+....-+..+|+|||+++ |...|+.
T Consensus 111 g~Yrr~F~lp~~~----~gkrv~L~FeGV~s~a~VwvNG~~V------------------------------G~~~g~~- 155 (1021)
T PRK10340 111 GAYQRTFTLSDGW----QGKQTIIKFDGVETYFEVYVNGQYV------------------------------GFSKGSR- 155 (1021)
T ss_pred EEEEEEEEeCccc----ccCcEEEEECccceEEEEEECCEEe------------------------------ccccCCC-
Confidence 6999999997543 3578899999999999999999999 6555543
Q ss_pred CCceEEEeeeeecCceeEEEEEEeeccccccccccee----eeceeeeeEEEeccC
Q 006681 561 NPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEK----WNAGVLGPVTLKGLN 612 (635)
Q Consensus 561 ~~~~~~~~~v~l~~G~n~islLs~tvGl~n~G~~~e~----~~aGi~g~V~l~g~~ 612 (635)
..|.|+..-.|++|.|.|++.-.. ..-|.+.|. +..||.++|.|.-.+
T Consensus 156 -~pfefDIT~~l~~G~N~LaV~V~~---~~d~s~le~qd~w~~sGI~R~V~L~~~p 207 (1021)
T PRK10340 156 -LTAEFDISAMVKTGDNLLCVRVMQ---WADSTYLEDQDMWWLAGIFRDVYLVGKP 207 (1021)
T ss_pred -ccEEEEcchhhCCCccEEEEEEEe---cCCCCccccCCccccccccceEEEEEeC
Confidence 336666655688999998765431 123455553 469999999996543
No 32
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=96.29 E-value=0.0057 Score=68.98 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=72.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~ 145 (635)
..|+++|+.||++|+|+.+.-+-|...+|. +++.|=+|-...+++|+.|.++||..++-. ..=.+|.||.
T Consensus 71 hry~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL--------~H~~~P~~l~ 142 (474)
T PRK09852 71 HRYKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTL--------CHFDVPMHLV 142 (474)
T ss_pred hhhHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------eCCCCCHHHH
Confidence 347999999999999999999999999997 566788888899999999999999976553 2446899997
Q ss_pred cC-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 146 ~~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+. -|-.-|..=..|.++++..+++..++++
T Consensus 143 ~~~GGW~~~~~~~~F~~ya~~~~~~fgd~Vk 173 (474)
T PRK09852 143 TEYGSWRNRKMVEFFSRYARTCFEAFDGLVK 173 (474)
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 3331122223344444444444444443
No 33
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=96.15 E-value=0.017 Score=70.83 Aligned_cols=93 Identities=18% Similarity=0.202 Sum_probs=67.4
Q ss_pred eeEEEeEEEeCCCcccccCCC-CceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeeecc
Q 006681 480 YLWYMTDVNIDSNEGFLKNGQ-DPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGS 558 (635)
Q Consensus 480 YlWY~T~v~~~~~~~~~~~~~-~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 558 (635)
-.||.++|++.++- .++ +..|+.........|||||+++ |...|+
T Consensus 121 ~gwYrr~F~vp~~w----~~~~rv~L~FeGV~~~a~VwvNG~~V------------------------------G~~~g~ 166 (1027)
T PRK09525 121 TGCYSLTFTVDESW----LQSGQTRIIFDGVNSAFHLWCNGRWV------------------------------GYSQDS 166 (1027)
T ss_pred eEEEEEEEEeChhh----cCCCeEEEEECeeccEEEEEECCEEE------------------------------EeecCC
Confidence 57999999997542 133 6799999999999999999999 765554
Q ss_pred CCCCceEEEeeeeecCceeEEEEEEeeccccccccccee----eeceeeeeEEEecc
Q 006681 559 LENPKLTFSKNVKLRPGVNKISLLSTSVGLPNVGTHFEK----WNAGVLGPVTLKGL 611 (635)
Q Consensus 559 ~~~~~~~~~~~v~l~~G~n~islLs~tvGl~n~G~~~e~----~~aGi~g~V~l~g~ 611 (635)
. ..|.|+..-.|++|.|.|++.-. =..-|.|+|. +..||.++|.|.-.
T Consensus 167 ~--~pfefDIT~~l~~G~N~L~V~V~---~~sdgs~~e~qd~w~~sGI~R~V~L~~~ 218 (1027)
T PRK09525 167 R--LPAEFDLSPFLRAGENRLAVMVL---RWSDGSYLEDQDMWRMSGIFRDVSLLHK 218 (1027)
T ss_pred C--ceEEEEChhhhcCCccEEEEEEE---ecCCCCccccCCceeeccccceEEEEEc
Confidence 3 33677666678999998776531 1122455553 45899999998554
No 34
>PRK10150 beta-D-glucuronidase; Provisional
Probab=96.08 E-value=0.024 Score=65.53 Aligned_cols=99 Identities=24% Similarity=0.293 Sum_probs=68.1
Q ss_pred ccceeEEEeEEEeCCCcccccCCCCceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeee
Q 006681 477 ASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVY 556 (635)
Q Consensus 477 ~sDYlWY~T~v~~~~~~~~~~~~~~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 556 (635)
..-..||.++|++.+.. .|+...|+.........|||||+++ |...
T Consensus 63 ~~G~~WYrr~f~lp~~~----~gk~v~L~Fegv~~~a~V~lNG~~v------------------------------g~~~ 108 (604)
T PRK10150 63 YVGDVWYQREVFIPKGW----AGQRIVLRFGSVTHYAKVWVNGQEV------------------------------MEHK 108 (604)
T ss_pred CcccEEEEEEEECCccc----CCCEEEEEECcccceEEEEECCEEe------------------------------eeEc
Confidence 34568999999997432 3678999999999999999999999 6655
Q ss_pred ccCCCCceEEEeeeeecCcee-EEEEEEeec---c-cccccccc-------------e-eeeceeeeeEEEeccC
Q 006681 557 GSLENPKLTFSKNVKLRPGVN-KISLLSTSV---G-LPNVGTHF-------------E-KWNAGVLGPVTLKGLN 612 (635)
Q Consensus 557 g~~~~~~~~~~~~v~l~~G~n-~islLs~tv---G-l~n~G~~~-------------e-~~~aGi~g~V~l~g~~ 612 (635)
|.. ..|.|+..-.|++|.| .|++--..- . +| .|.+. + ...+||.++|.|.-.+
T Consensus 109 ~~~--~~f~~DIT~~l~~G~~n~L~V~v~n~~~~~~~p-~g~~~~~~~~~~k~~~~~d~~~~~GI~r~V~L~~~~ 180 (604)
T PRK10150 109 GGY--TPFEADITPYVYAGKSVRITVCVNNELNWQTLP-PGNVIEDGNGKKKQKYNFDFFNYAGIHRPVMLYTTP 180 (604)
T ss_pred CCc--cceEEeCchhccCCCceEEEEEEecCCCcccCC-CCccccCCccccccccccccccccCCCceEEEEEcC
Confidence 433 3466766656889966 777654211 0 11 12211 1 2368999999996543
No 35
>PLN02998 beta-glucosidase
Probab=96.07 E-value=0.0085 Score=68.00 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=77.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|+++|+.||++|+|+-++-+-|...+|. .|.+|-+|-..-+++|+.+.++||..++-. -.=.+|.||.+
T Consensus 82 hry~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL--------~H~dlP~~L~~ 153 (497)
T PLN02998 82 HKYKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTL--------HHFDLPQALED 153 (497)
T ss_pred HhhHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999997 678899999999999999999999865442 13358999976
Q ss_pred C-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 147 ~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
. -|-.=|..=..|.++++.-++++.++++
T Consensus 154 ~yGGW~n~~~v~~F~~YA~~~~~~fgdrVk 183 (497)
T PLN02998 154 EYGGWLSQEIVRDFTAYADTCFKEFGDRVS 183 (497)
T ss_pred hhCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4443333335566666666666666665
No 36
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=96.00 E-value=0.052 Score=61.71 Aligned_cols=334 Identities=18% Similarity=0.242 Sum_probs=161.8
Q ss_pred EEeEEEEEEeeC------CCCCcccHHHHHHHH---HHCCCCEEEEcee--------cCccCCcCCccc---ccC-hhh-
Q 006681 51 QKRILISGSIHY------PRSTPEMWPDLIQKA---KDGGLDVIQTYVF--------WNGHEPTQGNYY---FQD-RYD- 108 (635)
Q Consensus 51 kr~~l~sG~iHY------~R~~pe~W~d~l~k~---Ka~GlN~I~tYVf--------Wn~HEP~~G~yd---F~G-~~d- 108 (635)
|++.=++|++=- .+.+++.=+++|+.. +-+|++.+++.+- +..-+ .|+-|+ |+= +.|
T Consensus 74 Q~i~GFGga~Tdasa~~l~~l~~~~r~~ll~~~F~~~G~g~s~~R~pIgssDfs~~~Yty~d-~~~D~~l~~Fs~~~~d~ 152 (496)
T PF02055_consen 74 QTIDGFGGAFTDASAYNLQKLSEEQRDELLRSLFSEDGIGYSLLRVPIGSSDFSTRPYTYDD-VPGDFNLSNFSIAREDK 152 (496)
T ss_dssp EE--EEEEE--HHHHHHHHTS-HHHHHHHHHHHHSTTTT---EEEEEES--SSSSS---ST--STTHTTTTT---HHHHH
T ss_pred eEEEEEeeeHHHHHHHHHHhCCHHHHHHHHHHHhhcCCceEEEEEeeccCcCCcCCcccccC-CCCCCccccCCccccch
Confidence 555567888741 223333222333332 4479999998874 22221 233222 221 112
Q ss_pred --HHHHHHHHHHc--CcEEEEecCceeeeecCCCCCCcccccCCCc----cccc-CChhhHHHHHHHHHHHHHHhhhccc
Q 006681 109 --LVRFIKLVQQA--GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI----EFRT-DNGPFKAAMHKFTEKIVSMMKAEKL 179 (635)
Q Consensus 109 --L~~Fl~la~e~--GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i----~~Rt-~n~~f~~~~~~~~~~I~~~ik~~~l 179 (635)
+..+|+.|++. +|+++.-| | -.|.|++....+ .++. .++.|.++...|+.+-++.+++
T Consensus 153 ~~~ip~ik~a~~~~~~lki~aSp-------W---SpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~--- 219 (496)
T PF02055_consen 153 KYKIPLIKEALAINPNLKIFASP-------W---SPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKK--- 219 (496)
T ss_dssp TTHHHHHHHHHHHHTT-EEEEEE-------S------GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHhCCCcEEEEec-------C---CCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHH---
Confidence 34678877663 57777765 4 479999874332 2442 3456888888888888887774
Q ss_pred cccCCCcEEEeccccccCCcc---ccCC------CChHHHHH-HHHHHHhhcCC--ccceEeecC--CCCCC---ccccC
Q 006681 180 FQTQGGPIILSQIENEFGPVE---WDIG------APGKAYAK-WAAQMAVGLNT--GVPWVMCKQ--DDAPD---PVINT 242 (635)
Q Consensus 180 ~~~~GGpII~~QIENEyg~~~---~~~~------~~~~~Y~~-wl~~~a~~~g~--~VPwi~c~~--~d~p~---~vi~t 242 (635)
+|=||=++-+.||..... ..+. +....|++ .|.-..++.+. ++-+++++. .+.|+ .+++-
T Consensus 220 ---~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d 296 (496)
T PF02055_consen 220 ---EGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILND 296 (496)
T ss_dssp ---TT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTS
T ss_pred ---CCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcC
Confidence 455899999999987421 1111 12344553 36656666665 676666542 23342 22221
Q ss_pred ------CC--Cccc--c-c-------cccCCCCCCceeeecccccccccCCCCCC---CChHHHHHHHHHHHHhCCeeee
Q 006681 243 ------CN--GFYC--E-K-------FVPNQNYKPKMWTEAWTGWFTEFGSAVPT---RPAEDLVFSVARFIQSGGSFIN 301 (635)
Q Consensus 243 ------~n--G~~c--d-~-------f~~~~~~~P~~~tE~w~Gwf~~wG~~~~~---r~~ed~a~~v~~~l~~ggs~~n 301 (635)
.. +++| + . .....|++..+.||...|.- .|+..... ..++..+..+..-+..+.+ +
T Consensus 297 ~~A~~yv~GiA~HwY~g~~~~~~l~~~h~~~P~k~l~~TE~~~g~~-~~~~~~~~g~w~~~~~y~~~ii~~lnn~~~--g 373 (496)
T PF02055_consen 297 PEAAKYVDGIAFHWYGGDPSPQALDQVHNKFPDKFLLFTEACCGSW-NWDTSVDLGSWDRAERYAHDIIGDLNNWVS--G 373 (496)
T ss_dssp HHHHTTEEEEEEEETTCS-HCHHHHHHHHHSTTSEEEEEEEESS-S-TTS-SS-TTHHHHHHHHHHHHHHHHHTTEE--E
T ss_pred hhhHhheeEEEEECCCCCchhhHHHHHHHHCCCcEEEeeccccCCC-CcccccccccHHHHHHHHHHHHHHHHhhce--e
Confidence 11 2333 1 1 11345888999999866531 11111111 1234444444455566544 2
Q ss_pred eec------ccCCCCCCCCC-CCcccccCCCCCCcccCCCCCchhHHHHHHHHHHHHhhccccCCCCCccccCCCceeEE
Q 006681 302 YYM------YHGGTNFGRTS-GGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDPTVKSLGKNQEAH 374 (635)
Q Consensus 302 yYM------~hGGTNfG~~~-g~~~~TSYDY~APIdE~G~~~~pKy~~lk~lh~~i~~~~~~L~~~~~~~~~lg~~~e~~ 374 (635)
+-+ -.||-|++.-. .+.++..=+. +| -.++|.|..|..+.+||+--...+-.... .-+...+..
T Consensus 374 w~~WNl~LD~~GGP~~~~n~~d~~iivd~~~----~~--~~~~p~yY~~gHfSKFV~PGa~RI~st~~---~~~~~l~~v 444 (496)
T PF02055_consen 374 WIDWNLALDENGGPNWVGNFCDAPIIVDSDT----GE--FYKQPEYYAMGHFSKFVRPGAVRIGSTSS---SSDSGLEAV 444 (496)
T ss_dssp EEEEESEBETTS---TT---B--SEEEEGGG----TE--EEE-HHHHHHHHHHTTS-TT-EEEEEEES---SSTTTEEEE
T ss_pred eeeeeeecCCCCCCcccCCCCCceeEEEcCC----Ce--EEEcHHHHHHHHHhcccCCCCEEEEeecc---CCCCceeEE
Confidence 222 25888875321 1111111111 12 24579999999999999853333322110 111257788
Q ss_pred EEecCCCceEEEEEecCCCce-EEEEECC-------eeEEeCCceEE
Q 006681 375 VFNSKSGKCAAFLANYDTTFS-AKVSFGN-------AQYDLPPWSIS 413 (635)
Q Consensus 375 ~y~~~~~~~~~Fl~N~~~~~~-~~V~f~~-------~~y~lp~~Svs 413 (635)
.|+..+++-++-+.|-.++.. .+|+.++ -.++|||.||.
T Consensus 445 AF~nPDGs~vvVv~N~~~~~~~~~v~v~~~~~~~~~~~~~lp~~s~~ 491 (496)
T PF02055_consen 445 AFLNPDGSIVVVVLNRGDSDQNFSVTVKDGSKGNNHFNVTLPPRSIV 491 (496)
T ss_dssp EEEETTSEEEEEEEE-SSS-EEEEEEEECTTTEE--EEEEEE-TTEE
T ss_pred EEECCCCCEEEEEEcCCCCccceEEEEecCCcceeEEEEEeCCCceE
Confidence 899877888877888554433 3566643 36899999885
No 37
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=96.00 E-value=0.011 Score=66.59 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=74.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|+++|+.||++|+|+-+.-+-|.-.+|. +|.+|-+|-..-+++|+.|.++||.-++-. -+=.+|.||.+
T Consensus 54 ~ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 125 (469)
T PRK13511 54 HRYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTL--------HHFDTPEALHS 125 (469)
T ss_pred hhhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCcHHHHH
Confidence 348999999999999999999999999997 578899999999999999999999866543 23468999987
Q ss_pred CCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 147 ~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
.-|-.=|..-..|.++++..+++..+ +|
T Consensus 126 ~GGW~n~~~v~~F~~YA~~~~~~fgd-Vk 153 (469)
T PRK13511 126 NGDWLNRENIDHFVRYAEFCFEEFPE-VK 153 (469)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCC-CC
Confidence 54432222234455555555555555 44
No 38
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=95.99 E-value=0.012 Score=66.37 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~ 145 (635)
..|+++|+.||++|+|+-+.-+-|...+|. +|++|=+|-.--+++|+.+.++||..++-. -+=.+|.||.
T Consensus 73 hry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL--------~H~dlP~~L~ 144 (478)
T PRK09593 73 HHYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTI--------THFDCPMHLI 144 (478)
T ss_pred HhhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCCHHHH
Confidence 458999999999999999999999999997 667888899999999999999999865442 1336899997
Q ss_pred cC-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 146 ~~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+. -|-.-|..=..|.++++.-++++.++++
T Consensus 145 ~~~GGW~n~~~v~~F~~YA~~~~~~fgdrVk 175 (478)
T PRK09593 145 EEYGGWRNRKMVGFYERLCRTLFTRYKGLVK 175 (478)
T ss_pred hhcCCCCChHHHHHHHHHHHHHHHHhcCcCC
Confidence 64 4432233334566666666666655555
No 39
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=95.97 E-value=0.13 Score=50.30 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=47.2
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceecCccC-----Cc---CCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-----PT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 63 ~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HE-----P~---~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
-.++++.|+.+++.||+.|+|+|=. -|...+ |. ++.|.-....-|+.+|++|++.||.|.+-.+
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIl--q~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLIL--QWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGMKVFVGLY 86 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEE--EEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCCEEEEeCC
Confidence 4689999999999999999998842 132221 11 2233334456899999999999999998754
No 40
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=95.94 E-value=2.9 Score=46.30 Aligned_cols=248 Identities=17% Similarity=0.250 Sum_probs=128.9
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEE-------ceecCccCCcCCccccc-ChhhHHHHHHHHHHcCcEEEEecCceee-
Q 006681 62 YPRSTPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVC- 132 (635)
Q Consensus 62 Y~R~~pe~W~d~l~k~Ka~GlN~I~t-------YVfWn~HEP~~G~ydF~-G~~dL~~Fl~la~e~GL~ViLR~GPYIc- 132 (635)
+.+..|+.| .+.+|++|...|=. +-.|.-....-..-+-. ++.-|.+|.+.|+++||.+-+ |..
T Consensus 78 p~~fD~~~W---a~~~k~AGakY~vlTaKHHDGF~lw~S~~t~~n~~~~~pkrDiv~el~~A~rk~Glk~G~----Y~S~ 150 (384)
T smart00812 78 AEKFDPEEW---ADLFKKAGAKYVVLTAKHHDGFCLWDSKYSNWNAVDTGPKRDLVGELADAVRKRGLKFGL----YHSL 150 (384)
T ss_pred chhCCHHHH---HHHHHHcCCCeEEeeeeecCCccccCCCCCCCcccCCCCCcchHHHHHHHHHHcCCeEEE----EcCH
Confidence 334556666 55788889885532 22365443321111211 333456789999999997766 443
Q ss_pred eecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCCChHH-HH
Q 006681 133 AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKA-YA 211 (635)
Q Consensus 133 AEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~-Y~ 211 (635)
-+|.+ |.|....+.-..+.+.+.|.++++.|+.+|.+.|.++ ||-|++- +-..+. .... -.
T Consensus 151 ~DW~~---p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Y-------gpd~lWf-D~~~~~-------~~~~~~~ 212 (384)
T smart00812 151 FDWFN---PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRY-------KPDLLWF-DGGWEA-------PDDYWRS 212 (384)
T ss_pred HHhCC---CccccccccccccccchhHHHHHHHHHHHHHHHHhcC-------CCceEEE-eCCCCC-------ccchhcH
Confidence 37764 5543321111234456788888888888888888732 3334432 111111 1111 12
Q ss_pred HHHHHHHhhcCCcc-ceEeecCCCCCCccccCCCCcc-c-cccccCCC-CCCceeeecccccccccCCCC-----CCCCh
Q 006681 212 KWAAQMAVGLNTGV-PWVMCKQDDAPDPVINTCNGFY-C-EKFVPNQN-YKPKMWTEAWTGWFTEFGSAV-----PTRPA 282 (635)
Q Consensus 212 ~wl~~~a~~~g~~V-Pwi~c~~~d~p~~vi~t~nG~~-c-d~f~~~~~-~~P~~~tE~w~Gwf~~wG~~~-----~~r~~ 282 (635)
+-+.++++++.-+. -.+.+.... .. .+...+++ | +...|... ..| | |.=.+=-..||-.. ..+++
T Consensus 213 ~~l~~~~~~~qP~~~~vvvn~R~~-~~--~~~~g~~~~~~e~~~p~~~~~~p--w-E~~~ti~~sWgy~~~~~~~~~ks~ 286 (384)
T smart00812 213 KEFLAWLYNLSPVKDTVVVNDRWG-GT--GCKHGGFYTDEERGAPGKLLPHP--W-ETCTTIGKSWGYRRNESDSDYKSP 286 (384)
T ss_pred HHHHHHHHHhCCCCceEEEEcccc-cc--CCCCCCcccCcccCCCCCCCCCC--c-ccccccCCCCCcCCCCCcccCCCH
Confidence 33444444443322 012222110 00 00000011 1 11112111 111 1 11000002455332 36799
Q ss_pred HHHHHHHHHHHHhCCeeeeeecccCCCCCCCCCCCcccccCCCCCCcccCCCCCchhHHHHHHHHHHHHhhccccCCCCC
Q 006681 283 EDLVFSVARFIQSGGSFINYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEPALVSVDP 362 (635)
Q Consensus 283 ed~a~~v~~~l~~ggs~~nyYM~hGGTNfG~~~g~~~~TSYDY~APIdE~G~~~~pKy~~lk~lh~~i~~~~~~L~~~~~ 362 (635)
+++...+....++||+++ + |. +-+.+|.+-+..-..|+++.+.|+..++++-.+.|
T Consensus 287 ~~li~~l~~~Vsk~GnlL---L-----NV----------------gP~~dG~ip~~~~~~L~~iG~Wl~~ngeaIy~tr~ 342 (384)
T smart00812 287 KELIRDLVDIVSKGGNLL---L-----NV----------------GPKADGTIPEEEEERLLEIGKWLKVNGEAIYGTRP 342 (384)
T ss_pred HHHHHHHhhhcCCCceEE---E-----cc----------------CCCCCCCCCHHHHHHHHHHHHHHHhCCceeecCCC
Confidence 999999889999999843 1 22 23457778777888999999999999999988876
Q ss_pred cc
Q 006681 363 TV 364 (635)
Q Consensus 363 ~~ 364 (635)
..
T Consensus 343 ~~ 344 (384)
T smart00812 343 WR 344 (384)
T ss_pred Cc
Confidence 43
No 41
>PLN02814 beta-glucosidase
Probab=95.93 E-value=0.01 Score=67.43 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=76.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|+++|+.||++|+|+-+.-+-|.-.+|. +|++|-+|-.--+++|+.|.++||.-++-. -+=-+|.||.+
T Consensus 77 hry~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL--------~H~dlP~~L~~ 148 (504)
T PLN02814 77 HKYKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTL--------YHYDLPQSLED 148 (504)
T ss_pred HhhHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEe--------cCCCCCHHHHH
Confidence 458999999999999999999999999996 688999999999999999999999866542 13357999987
Q ss_pred C-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 147 ~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
. -|-.-|..-..|.++++.-++++.+++|
T Consensus 149 ~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 178 (504)
T PLN02814 149 EYGGWINRKIIEDFTAFADVCFREFGEDVK 178 (504)
T ss_pred hcCCcCChhHHHHHHHHHHHHHHHhCCcCC
Confidence 4 4432233334566666666666666555
No 42
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=95.85 E-value=0.014 Score=66.04 Aligned_cols=100 Identities=12% Similarity=0.038 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~ 145 (635)
..|+++|+.||++|+|+-+.-+-|.-.+|. +|++|=+|-..-+++|+.|.++||.-++-. -+=-+|.||.
T Consensus 67 hry~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--------~H~dlP~~L~ 138 (476)
T PRK09589 67 HRYKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--------SHFEMPYHLV 138 (476)
T ss_pred HhhHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--------cCCCCCHHHH
Confidence 448999999999999999999999999997 567888899999999999999999865543 2346899997
Q ss_pred cC-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 146 ~~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+. -|-.-|..-..|.++++.-+++..+++|
T Consensus 139 ~~yGGW~n~~~i~~F~~YA~~~f~~fgdrVk 169 (476)
T PRK09589 139 TEYGGWRNRKLIDFFVRFAEVVFTRYKDKVK 169 (476)
T ss_pred HhcCCcCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 64 4443333334566666666666666665
No 43
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=95.82 E-value=0.015 Score=65.47 Aligned_cols=96 Identities=11% Similarity=0.068 Sum_probs=73.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|+++|+.||++|+|+-++-+-|...+|. +|++|=+|-.--+++|+.|.++||.-++-. -+=-+|.||.+
T Consensus 53 hry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 124 (467)
T TIGR01233 53 HKYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTL--------HHFDTPEALHS 124 (467)
T ss_pred hhHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEec--------cCCCCcHHHHH
Confidence 348999999999999999999999999996 678888899999999999999999866553 13358999987
Q ss_pred CCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 147 ~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
.-|- .|+...++-.+|.+.+++.+.
T Consensus 125 ~GGW----~n~~~v~~F~~YA~~~f~~fg 149 (467)
T TIGR01233 125 NGDF----LNRENIEHFIDYAAFCFEEFP 149 (467)
T ss_pred cCCC----CCHHHHHHHHHHHHHHHHHhC
Confidence 5443 233334444444444444444
No 44
>PLN02849 beta-glucosidase
Probab=95.66 E-value=0.017 Score=65.63 Aligned_cols=100 Identities=17% Similarity=0.185 Sum_probs=76.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|+++|+.||++|+|+-+.-+-|.-.+|. .|++|=+|-..-+++|+.+.++||.-++-. -+=-+|.||.+
T Consensus 79 hrY~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL--------~H~dlP~~L~~ 150 (503)
T PLN02849 79 HKYKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTL--------FHYDHPQYLED 150 (503)
T ss_pred HhHHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEee--------cCCCCcHHHHH
Confidence 358999999999999999999999999997 478898999999999999999999865542 13358999977
Q ss_pred C-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 147 V-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 147 ~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
. -|-.=|..-..|.++++.-+++..+++|
T Consensus 151 ~yGGW~nr~~v~~F~~YA~~~f~~fgDrVk 180 (503)
T PLN02849 151 DYGGWINRRIIKDFTAYADVCFREFGNHVK 180 (503)
T ss_pred hcCCcCCchHHHHHHHHHHHHHHHhcCcCC
Confidence 4 4432333334566666666666666555
No 45
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=95.52 E-value=0.13 Score=54.88 Aligned_cols=110 Identities=24% Similarity=0.336 Sum_probs=77.9
Q ss_pred HHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHH---HcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~---e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
=.|.++-+|+.|+|.|+.-| ||..--.-|+=.=.|+.|+.+.+++++ ..||+|+|.+= .-+|-.
T Consensus 65 ~qD~~~iLK~~GvNyvRlRv-wndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFH-----------YSDfwa- 131 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRV-WNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFH-----------YSDFWA- 131 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEE-ecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeecc-----------chhhcc-
Confidence 36899999999999999865 665544555545567899999988875 57999999852 112221
Q ss_pred CCCcc------cccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCC
Q 006681 147 VPGIE------FRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP 198 (635)
Q Consensus 147 ~p~i~------~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~ 198 (635)
+|+-+ ..-+-+.-++++-.|++..+..|+++.. -+=||||-||-.+
T Consensus 132 DPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~eGi------~pdmVQVGNEtn~ 183 (403)
T COG3867 132 DPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKKEGI------LPDMVQVGNETNG 183 (403)
T ss_pred ChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHHcCC------CccceEeccccCC
Confidence 23211 1223356678889999999999996553 4569999999743
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=94.77 E-value=0.18 Score=47.65 Aligned_cols=99 Identities=13% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHCCCCEEEEce-------ec--CccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCc
Q 006681 72 DLIQKAKDGGLDVIQTYV-------FW--NGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPV 142 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~tYV-------fW--n~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~ 142 (635)
+.++.+|++|+|+|.++. +| ..|.+.|+- ++.-|.++++.|++.||.|+.|.-.- --|+..--.|.
T Consensus 4 ~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L----~~Dllge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPe 78 (132)
T PF14871_consen 4 QFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGL----KRDLLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPE 78 (132)
T ss_pred HHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCC----CcCHHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCc
Confidence 456789999999998843 22 345555654 13367899999999999999997655 33444455799
Q ss_pred ccccCCCcc-------------cccCChhhHHHHHHHHHHHHHHhh
Q 006681 143 WLKYVPGIE-------------FRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 143 WL~~~p~i~-------------~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
|+..+++-+ .=..|.+|++.+.+-+++|++...
T Consensus 79 W~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 79 WFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred eeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 997654322 112356788877777777766553
No 47
>PRK09936 hypothetical protein; Provisional
Probab=94.37 E-value=0.86 Score=48.61 Aligned_cols=58 Identities=24% Similarity=0.343 Sum_probs=47.1
Q ss_pred CCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh-hhHHHHHHHHHHcCcEEEEe
Q 006681 63 PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR-YDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 63 ~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~-~dL~~Fl~la~e~GL~ViLR 126 (635)
.+++++.|+++++.+|+.|++++= |-|..--.+ ||.|. ..|.+-++.|++.||.|++.
T Consensus 33 ~~~~~~qWq~~~~~~~~~G~~tLi--vQWt~yG~~----~fg~~~g~La~~l~~A~~~Gl~v~vG 91 (296)
T PRK09936 33 SQVTDTQWQGLWSQLRLQGFDTLV--VQWTRYGDA----DFGGQRGWLAKRLAAAQQAGLKLVVG 91 (296)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEE--EEeeeccCC----CcccchHHHHHHHHHHHHcCCEEEEc
Confidence 358999999999999999999864 456544111 88875 58999999999999999875
No 48
>COG2723 BglB Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]
Probab=94.05 E-value=0.096 Score=58.85 Aligned_cols=100 Identities=19% Similarity=0.244 Sum_probs=73.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCC--cccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G--~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~ 145 (635)
..++++|+.||++|+|+.++-+-|...-|..+ +.|=.|-..-++.++.|.++|+.-++-. .+=-+|.||.
T Consensus 59 hrYkeDi~L~~emG~~~~R~SI~WsRIfP~g~~~e~N~~gl~fY~~l~del~~~gIep~vTL--------~Hfd~P~~L~ 130 (460)
T COG2723 59 HRYKEDIALAKEMGLNAFRTSIEWSRIFPNGDGGEVNEKGLRFYDRLFDELKARGIEPFVTL--------YHFDLPLWLQ 130 (460)
T ss_pred hhhHHHHHHHHHcCCCEEEeeeeEEEeecCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEe--------cccCCcHHHh
Confidence 34789999999999999999999999999655 4888899999999999999999976553 2335799998
Q ss_pred cC-CCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 146 YV-PGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 146 ~~-p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+. -|-.=|..=..|.+..+.-+++.-+.++
T Consensus 131 ~~ygGW~nR~~i~~F~~ya~~vf~~f~dkVk 161 (460)
T COG2723 131 KPYGGWENRETVDAFARYAATVFERFGDKVK 161 (460)
T ss_pred hccCCccCHHHHHHHHHHHHHHHHHhcCcce
Confidence 76 3543344334454444444444444444
No 49
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=92.57 E-value=2 Score=50.27 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=45.3
Q ss_pred EEeeCCCCCc-ccHHHHH----HHHHHCCCCEEEE-ceecCccCCcCCcc----------cccChhhHHHHHHHHHHcCc
Q 006681 58 GSIHYPRSTP-EMWPDLI----QKAKDGGLDVIQT-YVFWNGHEPTQGNY----------YFQDRYDLVRFIKLVQQAGL 121 (635)
Q Consensus 58 G~iHY~R~~p-e~W~d~l----~k~Ka~GlN~I~t-YVfWn~HEP~~G~y----------dF~G~~dL~~Fl~la~e~GL 121 (635)
=|+|..-.++ -.++..+ .-+|++|+|+|+. +|+..-....= -| .|.+..||.+|++.|+++||
T Consensus 142 Ye~hv~~~~~~g~~~~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~w-GY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi 220 (613)
T TIGR01515 142 YELHLGSWRHGLSYRELADQLIPYVKELGFTHIELLPVAEHPFDGSW-GYQVTGYYAPTSRFGTPDDFMYFVDACHQAGI 220 (613)
T ss_pred EEEehhhccCCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCC-CCCcccCcccccccCCHHHHHHHHHHHHHCCC
Confidence 3556432221 3354443 5569999999998 77753211100 12 35566899999999999999
Q ss_pred EEEEec
Q 006681 122 YVHLRI 127 (635)
Q Consensus 122 ~ViLR~ 127 (635)
.|||..
T Consensus 221 ~VilD~ 226 (613)
T TIGR01515 221 GVILDW 226 (613)
T ss_pred EEEEEe
Confidence 999984
No 50
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=91.79 E-value=3.6 Score=42.64 Aligned_cols=98 Identities=17% Similarity=0.314 Sum_probs=62.9
Q ss_pred cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCCCcccc
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~P~WL~ 145 (635)
...|++.|+.+++.|++.|+.-+ +.. +..++..+++ ..++.++.++++++||.|. +.+++ .+.+|
T Consensus 15 ~~~~~e~l~~~~~~G~~~VEl~~-~~~-~~~~~~~~~~-~~~~~~~~~~l~~~gl~i~~~~~~~-------~~~~~---- 80 (279)
T TIGR00542 15 GECWLERLQLAKTCGFDFVEMSV-DET-DDRLSRLDWS-REQRLALVNAIIETGVRIPSMCLSA-------HRRFP---- 80 (279)
T ss_pred CCCHHHHHHHHHHcCCCEEEEec-CCc-cchhhccCCC-HHHHHHHHHHHHHcCCCceeeecCC-------CccCc----
Confidence 56799999999999999999942 222 2223445555 3578899999999999875 44331 11111
Q ss_pred cCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEe
Q 006681 146 YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILS 190 (635)
Q Consensus 146 ~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~ 190 (635)
+-..|+.-+++..+.+++.++..+ .+ |.++|.+
T Consensus 81 ------l~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~ 113 (279)
T TIGR00542 81 ------LGSKDKAVRQQGLEIMEKAIQLAR--DL----GIRTIQL 113 (279)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEe
Confidence 122245555655666777777666 32 5677654
No 51
>KOG0496 consensus Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=91.56 E-value=2.9 Score=48.89 Aligned_cols=83 Identities=27% Similarity=0.396 Sum_probs=57.4
Q ss_pred ceeEEEeEEEeCCCcccccCCCCceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeeecc
Q 006681 479 DYLWYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGS 558 (635)
Q Consensus 479 DYlWY~T~v~~~~~~~~~~~~~~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 558 (635)
=-.||- ++++.+.. .+..|...+.|-- .|+|||+-+ |-.+-+
T Consensus 557 P~~w~k-~f~~p~g~------~~t~Ldm~g~GKG-~vwVNG~ni------------------------------GRYW~~ 598 (649)
T KOG0496|consen 557 PLTWYK-TFDIPSGS------EPTALDMNGWGKG-QVWVNGQNI------------------------------GRYWPS 598 (649)
T ss_pred CeEEEE-EecCCCCC------CCeEEecCCCcce-EEEECCccc------------------------------ccccCC
Confidence 367888 66665433 2467888887665 589999999 654443
Q ss_pred CCCCceEEEeee-eecCceeEEEEEEeecccccccccceeeece
Q 006681 559 LENPKLTFSKNV-KLRPGVNKISLLSTSVGLPNVGTHFEKWNAG 601 (635)
Q Consensus 559 ~~~~~~~~~~~v-~l~~G~n~islLs~tvGl~n~G~~~e~~~aG 601 (635)
.+. +.++-.|- -|+++.|.|.++=..-|-|+ +..|..+...
T Consensus 599 ~G~-Q~~yhvPr~~Lk~~~N~lvvfEee~~~p~-~i~~~~~~~~ 640 (649)
T KOG0496|consen 599 FGP-QRTYHVPRSWLKPSGNLLVVFEEEGGDPN-GISFVTRPVL 640 (649)
T ss_pred CCC-ceEEECcHHHhCcCCceEEEEEeccCCCc-cceEEEeEee
Confidence 333 55665552 38999999999988887777 6666666554
No 52
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=91.01 E-value=0.81 Score=49.06 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=70.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecC-------ccCCc-------CCcccccChhhHHHHHHHHHHcCcEEEEecCcee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWN-------GHEPT-------QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn-------~HEP~-------~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYI 131 (635)
.++.-++.|+++|++|+|+|-.=|.+. -.+|. +|. + -|..-|..+|+.|++.||.|+.++ .+-
T Consensus 17 ~~~~~~~~l~~l~~~~~N~V~~qVr~~gda~Y~S~~~p~s~~~~g~~~~-~-pg~DpL~~~I~eaHkrGlevHAW~-~~~ 93 (311)
T PF02638_consen 17 SKEQIDEMLDDLKSAGFNAVFVQVRPRGDALYPSDIEPWSGYLTGKQGK-D-PGFDPLEFMIEEAHKRGLEVHAWF-RVG 93 (311)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEEeCcEEEecccccccccccCCCCCC-C-CCccHHHHHHHHHHHcCCEEEEEE-Eee
Confidence 677788999999999999997555432 22221 111 1 122379999999999999999776 211
Q ss_pred eeecC----CCCCCcccc-cCCCccccc----CCh----hhHHHHHHHHHHHHHHhhhccccccCCCcEEEecccc
Q 006681 132 CAEWN----YGGFPVWLK-YVPGIEFRT----DNG----PFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIEN 194 (635)
Q Consensus 132 cAEw~----~GG~P~WL~-~~p~i~~Rt----~n~----~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIEN 194 (635)
..--. .-..|.|+. +.|+..... .+. |-..+++.|+..++..+.+ .+ +|=++|++-
T Consensus 94 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~-~Y------dvDGIhlDd 162 (311)
T PF02638_consen 94 FNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVK-NY------DVDGIHLDD 162 (311)
T ss_pred cCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHh-cC------CCCeEEecc
Confidence 11001 112578875 456543333 111 2245677777776655431 21 355678873
No 53
>smart00642 Aamy Alpha-amylase domain.
Probab=89.95 E-value=1 Score=44.02 Aligned_cols=65 Identities=15% Similarity=0.175 Sum_probs=44.2
Q ss_pred HHHHHHHHHHCCCCEEEEceecCcc-------CCcCCcc-----cccChhhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 70 WPDLIQKAKDGGLDVIQTYVFWNGH-------EPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~tYVfWn~H-------EP~~G~y-----dF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
+.+.|.-+|++|+|+|..-=++..- .-.+..| .|....++.++++.|+++||.|++..=|-=++.
T Consensus 21 i~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 21 IIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred HHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 3445556999999999874332211 1122222 456678999999999999999999875544444
No 54
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=88.45 E-value=5.3 Score=41.06 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=74.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~P~WL~~ 146 (635)
-.|++.++.++++|++.|+..+. ..|+ .....+|+ ..++.++-++++++||.+. +.++.+ + .+
T Consensus 16 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~Gl~i~~~~~~~~----~---~~------ 79 (284)
T PRK13210 16 LSWEERLVFAKELGFDFVEMSVD-ESDE-RLARLDWS-KEERLSLVKAIYETGVRIPSMCLSGH----R---RF------ 79 (284)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-Cccc-ccccccCC-HHHHHHHHHHHHHcCCCceEEecccc----c---Cc------
Confidence 47999999999999999999632 2222 11122333 3579999999999999875 332210 0 01
Q ss_pred CCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccc-cCCCChHHHHHHHHHHHhhcCCcc
Q 006681 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEW-DIGAPGKAYAKWAAQMAVGLNTGV 225 (635)
Q Consensus 147 ~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~-~~~~~~~~Y~~wl~~~a~~~g~~V 225 (635)
.+.+.|+..++...+.++++++..+ .| |.+.|.+---..+..... ..-+.-.+.++.+.++|.+.|+.+
T Consensus 80 ----~~~~~d~~~r~~~~~~~~~~i~~a~--~l----G~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l 149 (284)
T PRK13210 80 ----PFGSRDPATRERALEIMKKAIRLAQ--DL----GIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVML 149 (284)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hh----CCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEE
Confidence 1334556656666666777777666 32 456665421000000000 000111246777778888887654
No 55
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=88.43 E-value=5 Score=46.46 Aligned_cols=149 Identities=16% Similarity=0.231 Sum_probs=95.4
Q ss_pred cceEEECCEEeEEEEEEeeCC-----CCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHH
Q 006681 43 HKAVIINGQKRILISGSIHYP-----RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (635)
Q Consensus 43 ~~~l~idGkr~~l~sG~iHY~-----R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~ 117 (635)
+..|.|||.|.++.+++--++ |.+-+.-+-+|+.++++|+|++++ |. .|.+.-+.|-++|.
T Consensus 327 nfyfkin~~pvflkg~nwip~s~f~dr~t~~~~~~LL~Sv~e~~MN~lRV---WG-----------GGvYEsd~FY~lad 392 (867)
T KOG2230|consen 327 NFYFKINDEPVFLKGTNWIPVSMFRDRENIAKTEFLLDSVAEVGMNMLRV---WG-----------GGVYESDYFYQLAD 392 (867)
T ss_pred eeEEEEcCcEEEeecCCccChHHHHhhHHHHHHHHHHHHHHHhCcceEEE---ec-----------CccccchhHHHHhh
Confidence 357899999999888774432 234444556799999999999998 54 23345689999999
Q ss_pred HcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc--
Q 006681 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE-- 195 (635)
Q Consensus 118 e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENE-- 195 (635)
+.||.|--.. =|.||= =..|+.|+.-++.=++.=+.+++.|+ .||.+-=.||
T Consensus 393 ~lGilVWQD~-MFACAl------------------YPt~~eFl~sv~eEV~yn~~Rls~Hp-------SviIfsgNNENE 446 (867)
T KOG2230|consen 393 SLGILVWQDM-MFACAL------------------YPTNDEFLSSVREEVRYNAMRLSHHP-------SVIIFSGNNENE 446 (867)
T ss_pred hccceehhhh-HHHhhc------------------ccCcHHHHHHHHHHHHHHHHhhccCC-------eEEEEeCCCccH
Confidence 9999764321 123332 23467888888887777777777554 6776655444
Q ss_pred -------cCCccccCCCChHH----HHHHHHHHHhhcCCccceEeec
Q 006681 196 -------FGPVEWDIGAPGKA----YAKWAAQMAVGLNTGVPWVMCK 231 (635)
Q Consensus 196 -------yg~~~~~~~~~~~~----Y~~wl~~~a~~~g~~VPwi~c~ 231 (635)
||..-..-...-+. |.+-+++++..-.-..|.||..
T Consensus 447 aAl~~nWy~~sf~~~~~~~kdyvlly~~~i~el~l~~~~srPfi~SS 493 (867)
T KOG2230|consen 447 AALVQNWYGTSFERDRFESKDYVLLYANVIHELKLVSHSSRPFIVSS 493 (867)
T ss_pred HHHHhhhhcccccccchhhhhhhHHHHHHHHHHHhhcCCCCCceecC
Confidence 22110000011122 4455666776667788988864
No 56
>PRK05402 glycogen branching enzyme; Provisional
Probab=88.09 E-value=9.6 Score=45.57 Aligned_cols=53 Identities=21% Similarity=0.223 Sum_probs=36.8
Q ss_pred HHHHHCCCCEEEE-ceecC----ccCCcCCcc-----cccChhhHHHHHHHHHHcCcEEEEec
Q 006681 75 QKAKDGGLDVIQT-YVFWN----GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 75 ~k~Ka~GlN~I~t-YVfWn----~HEP~~G~y-----dF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.-+|++|+|+|+. +|+=. .|-..+.-| .|.+..||.+|++.|+++||.|||-.
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 5569999999996 56411 111111111 24567899999999999999999984
No 57
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=86.79 E-value=1.2 Score=48.94 Aligned_cols=70 Identities=27% Similarity=0.251 Sum_probs=46.9
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCcee
Q 006681 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYV 131 (635)
Q Consensus 56 ~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYI 131 (635)
++=|+.+...+.+.....|++|++.|+..|-| ++|.|+...=+. ...+..++++|++.||.|++.+.|=+
T Consensus 2 lGiSvY~~~~~~~~~~~yi~~a~~~Gf~~iFT----SL~ipe~~~~~~--~~~~~~l~~~a~~~~~~v~~Disp~~ 71 (357)
T PF05913_consen 2 LGISVYPGQSSFEENKAYIEKAAKYGFKRIFT----SLHIPEDDPEDY--LERLKELLKLAKELGMEVIADISPKV 71 (357)
T ss_dssp EEEEE-CCCS-HHHHHHHHHHHHCTTEEEEEE----EE---------H--HHHHHHHHHHHHHCT-EEEEEE-CCH
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEC----CCCcCCCCHHHH--HHHHHHHHHHHHHCCCEEEEECCHHH
Confidence 45567777778899999999999999977666 789998543211 14788999999999999999987644
No 58
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=86.35 E-value=0.67 Score=52.34 Aligned_cols=157 Identities=15% Similarity=0.184 Sum_probs=101.2
Q ss_pred eEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCcc-CCc---CCcccc-cChhhHHHHHHHHHHc
Q 006681 45 AVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EPT---QGNYYF-QDRYDLVRFIKLVQQA 119 (635)
Q Consensus 45 ~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~H-EP~---~G~ydF-~G~~dL~~Fl~la~e~ 119 (635)
.|.++++++-.++..--+++.--++-+++++-|+..|+++++.. .+- |+- +|.-+- +|-.-++.|++.|.+.
T Consensus 3 ~F~Lg~n~wprIanikmw~~~~~~ei~~dle~a~~vg~k~lR~f---iLDgEdc~d~~G~~na~s~~~y~~~fla~a~~l 79 (587)
T COG3934 3 VFALGLNRWPRIANIKMWPAIGNREIKADLEPAGFVGVKDLRLF---ILDGEDCRDKEGYRNAGSNVWYAAWFLAPAGYL 79 (587)
T ss_pred eEEeccccchhhhhhhHHHHhhhhhhhcccccccCccceeEEEE---EecCcchhhhhceecccccHHHHHHHhhhcccC
Confidence 36777777777766666777777777888999999999999986 344 663 333222 2345789999999999
Q ss_pred CcEEEEecCceeeeecCCCCC---Ccccc-cCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc
Q 006681 120 GLYVHLRIGPYVCAEWNYGGF---PVWLK-YVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (635)
Q Consensus 120 GL~ViLR~GPYIcAEw~~GG~---P~WL~-~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENE 195 (635)
+|+|+++. |.+==..||- -.|-- +.|+-.. -|+.++..-++|...+++-.| +...|.++-+-||
T Consensus 80 ~lkvlitl---ivg~~hmgg~Nw~Ipwag~~~pdn~i--yD~k~~~~~kkyvedlVk~yk-------~~ptI~gw~l~Ne 147 (587)
T COG3934 80 DLKVLITL---IVGLKHMGGTNWRIPWAGEQSPDNVI--YDPKFRGPGKKYVEDLVKPYK-------LDPTIAGWALRNE 147 (587)
T ss_pred cceEEEEE---eecccccCcceeEeecCCCCCccccc--cchhhcccHHHHHHHHhhhhc-------cChHHHHHHhcCC
Confidence 99998773 3331123442 11221 1132111 145555555777777777554 3457888999999
Q ss_pred cCCccccCCCChHHHHHHHHHHHh
Q 006681 196 FGPVEWDIGAPGKAYAKWAAQMAV 219 (635)
Q Consensus 196 yg~~~~~~~~~~~~Y~~wl~~~a~ 219 (635)
... .-...+..+++|+++|..
T Consensus 148 --~lv-~~p~s~N~f~~w~~emy~ 168 (587)
T COG3934 148 --PLV-EAPISVNNFWDWSGEMYA 168 (587)
T ss_pred --ccc-cccCChhHHHHHHHHHHH
Confidence 221 112356889999999963
No 59
>PRK14706 glycogen branching enzyme; Provisional
Probab=86.34 E-value=15 Score=43.51 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=35.9
Q ss_pred HHHHHHCCCCEEEE-cee-------cCccCC--cCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 74 IQKAKDGGLDVIQT-YVF-------WNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 74 l~k~Ka~GlN~I~t-YVf-------Wn~HEP--~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.-+|++|+|+|+. .|. |...-- ..=.=.|....||.+|++.|+++||.|||..
T Consensus 174 ~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 174 GEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 35589999999995 332 322100 0000123456899999999999999999884
No 60
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.66 E-value=2.3 Score=40.81 Aligned_cols=124 Identities=14% Similarity=0.111 Sum_probs=71.6
Q ss_pred HHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccc
Q 006681 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR 153 (635)
Q Consensus 74 l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~R 153 (635)
|+.++++|++.|+...........+ ...++++.++++++||.+..--.+. .+.. +....+
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~-------~~~~~~~~~~~~~~gl~i~~~~~~~---~~~~----------~~~~~~ 60 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEK-------DDEAEELRRLLEDYGLKIASLHPPT---NFWS----------PDEENG 60 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHH-------HHHHHHHHHHHHHTTCEEEEEEEEE---SSSC----------TGTTST
T ss_pred ChHHHHcCCCEEEEecCCCcccccc-------hHHHHHHHHHHHHcCCeEEEEeccc---cccc----------cccccc
Confidence 5789999999999866543222221 3579999999999999965321111 1100 111134
Q ss_pred cCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccc--cccCCcccc-CCCChHHHHHHHHHHHhhcCCc
Q 006681 154 TDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIE--NEFGPVEWD-IGAPGKAYAKWAAQMAVGLNTG 224 (635)
Q Consensus 154 t~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIE--NEyg~~~~~-~~~~~~~Y~~wl~~~a~~~g~~ 224 (635)
+.+++ ++...+.+.+.++..+ .+ |.+.|.+..= +........ .-+.-.+.++.+.+.|.+.|+.
T Consensus 61 ~~~~~-r~~~~~~~~~~i~~a~--~l----g~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~ 127 (213)
T PF01261_consen 61 SANDE-REEALEYLKKAIDLAK--RL----GAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVR 127 (213)
T ss_dssp TSSSH-HHHHHHHHHHHHHHHH--HH----TBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred Ccchh-hHHHHHHHHHHHHHHH--Hh----CCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcce
Confidence 44444 7777778888888887 33 5677777643 111111000 0011234566677777777754
No 61
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=84.89 E-value=1.8 Score=48.99 Aligned_cols=61 Identities=10% Similarity=0.206 Sum_probs=43.2
Q ss_pred cccHHH---HHHHHHHCCCCEEEE-ceecCc-----cCCcCC-cc-------------cccChhhHHHHHHHHHHcCcEE
Q 006681 67 PEMWPD---LIQKAKDGGLDVIQT-YVFWNG-----HEPTQG-NY-------------YFQDRYDLVRFIKLVQQAGLYV 123 (635)
Q Consensus 67 pe~W~d---~l~k~Ka~GlN~I~t-YVfWn~-----HEP~~G-~y-------------dF~G~~dL~~Fl~la~e~GL~V 123 (635)
.+.|.. .|.-+|++|+++|-+ ++|-+. |--.+- -| .|....||.++++.|++.||+|
T Consensus 18 ~~~~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~v 97 (479)
T PRK09441 18 GKLWNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKV 97 (479)
T ss_pred ccHHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEE
Confidence 456764 456689999999986 465442 332221 22 3445689999999999999999
Q ss_pred EEec
Q 006681 124 HLRI 127 (635)
Q Consensus 124 iLR~ 127 (635)
|+-.
T Consensus 98 i~D~ 101 (479)
T PRK09441 98 YADV 101 (479)
T ss_pred EEEE
Confidence 9874
No 62
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=84.82 E-value=12 Score=38.75 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHc-CcEEEE
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVHL 125 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~-GL~ViL 125 (635)
..|++.|+.+|++|++.|+.-+....-.+ .......++.++.++++++ ++.+.+
T Consensus 10 ~~l~~~l~~a~~~G~d~vEl~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~i~~ 64 (279)
T cd00019 10 FGLENALKRAKEIGFDTVAMFLGNPRSWL----SRPLKKERAEKFKAIAEEGPSICLSV 64 (279)
T ss_pred ccHHHHHHHHHHcCCCEEEEEcCCCCccC----CCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 77999999999999999998764321111 1112456899999999999 666554
No 63
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.49 E-value=7.7 Score=43.58 Aligned_cols=123 Identities=20% Similarity=0.265 Sum_probs=77.7
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEce-------------ecCccCCcCCcccc-cChhhHHHHHHHHHHcCcEEEEecCce
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYV-------------FWNGHEPTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYV-------------fWn~HEP~~G~ydF-~G~~dL~~Fl~la~e~GL~ViLR~GPY 130 (635)
-.++.-.+.|.+++++|+|||-.=| +|..-- ||..-= .|..-|...|++|++.||.|+-+.=||
T Consensus 61 ~~~~el~~~ld~l~~ln~NTv~~qV~~~G~~lypS~~~p~s~~~--~~~~~~~~g~DpLa~~I~~AHkr~l~v~aWf~~~ 138 (418)
T COG1649 61 FQRQELKDILDDLQKLNFNTVYPQVWNDGDALYPSAVLPWSDGL--PGVLGVDPGYDPLAFVIAEAHKRGLEVHAWFNPY 138 (418)
T ss_pred ccHHHHHHHHHHHHHcCCceeEEEEecCccccccccccccccCc--CcccCCCCCCChHHHHHHHHHhcCCeeeechhhc
Confidence 3677788999999999999996322 233222 443321 244467777999999999999998887
Q ss_pred eeeecCCCC---CCcccccC-CCccc-ccCC-------hhhHHHHHHHHHHHH-HHhhhccccccCCCcEEEeccccccC
Q 006681 131 VCAEWNYGG---FPVWLKYV-PGIEF-RTDN-------GPFKAAMHKFTEKIV-SMMKAEKLFQTQGGPIILSQIENEFG 197 (635)
Q Consensus 131 IcAEw~~GG---~P~WL~~~-p~i~~-Rt~n-------~~f~~~~~~~~~~I~-~~ik~~~l~~~~GGpII~~QIENEyg 197 (635)
..|--..-. -|.|+... |+-.. |.+. .|+.-+++.|+..++ ++++++ .|=++|++.=++
T Consensus 139 ~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Y--------dvDGIQfDd~fy 210 (418)
T COG1649 139 RMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNY--------DVDGIQFDDYFY 210 (418)
T ss_pred ccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCC--------CCCceecceeec
Confidence 765321111 36666543 43322 2221 245567888887754 566633 466788876654
No 64
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=83.16 E-value=5.6 Score=50.52 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=72.3
Q ss_pred eEEECCEEeEEEEEE---eeCCC--CCcccHHHHHHHHHHCCCCEEEE-cee-cCc--c-CCcCCccc----c----cCh
Q 006681 45 AVIINGQKRILISGS---IHYPR--STPEMWPDLIQKAKDGGLDVIQT-YVF-WNG--H-EPTQGNYY----F----QDR 106 (635)
Q Consensus 45 ~l~idGkr~~l~sG~---iHY~R--~~pe~W~d~l~k~Ka~GlN~I~t-YVf-Wn~--H-EP~~G~yd----F----~G~ 106 (635)
.|.|||++.+.+.+= -..++ -+-+.|++.|+.+|+.|.|+|.. +++ =.. | =...+++. | .|.
T Consensus 104 ~L~i~~~~~lPl~~i~iqTvlsK~mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~SnS~Ysi~Dyl~idP~~~~~~~~~ 183 (1464)
T TIGR01531 104 MLYINADKFLPLDSIALQTVLAKLLGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGSNSCYSLYDQLQLNQHFKSQKDGK 183 (1464)
T ss_pred eeEECCCcccCcCceeeeeehhhhcCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCccccchhhcChhhcccCCcH
Confidence 466667555554432 23455 24478999999999999999984 555 111 0 01123332 3 367
Q ss_pred hhHHHHHHHHHHc-CcEEEEecCceeeeecCCCCC-CcccccCCCcccccCChhhHH
Q 006681 107 YDLVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKA 161 (635)
Q Consensus 107 ~dL~~Fl~la~e~-GL~ViLR~GPYIcAEw~~GG~-P~WL~~~p~i~~Rt~n~~f~~ 161 (635)
.|+.++++.+++. ||.+|+.. =||+-+. =.||.+.|+.-....+.|+++
T Consensus 184 ~d~~~lV~~~h~~~Gm~~ilDv------V~NHTa~ds~Wl~eHPEa~Yn~~~sP~L~ 234 (1464)
T TIGR01531 184 NDVQALVEKLHRDWNVLSITDI------VFNHTANNSPWLLEHPEAAYNCITSPHLR 234 (1464)
T ss_pred HHHHHHHHHHHHhcCCEEEEEe------eecccccCCHHHHhChHhhcCCCCCchhh
Confidence 8999999999996 99999885 3555554 458888887555555555554
No 65
>PRK12568 glycogen branching enzyme; Provisional
Probab=82.74 E-value=24 Score=42.49 Aligned_cols=55 Identities=24% Similarity=0.362 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCEEEE-cee-------cCccCCcCCcc----cccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 73 LIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY----YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~t-YVf-------Wn~HEP~~G~y----dF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
.|.-+|++|+|+|+. +|+ |... | -|-| .|....++.+|++.|+++||.|||..=|
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~-~-~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~ 341 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQ-P-LGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVS 341 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCC-C-CcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 356689999999996 443 4321 0 0111 3556789999999999999999998544
No 66
>PRK01060 endonuclease IV; Provisional
Probab=82.69 E-value=12 Score=38.69 Aligned_cols=93 Identities=13% Similarity=0.211 Sum_probs=58.9
Q ss_pred HHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEE---EEecCceeeeecCCCCCCccccc
Q 006681 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV---HLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V---iLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
+++.|++++++|++.|+..+- +-|.-.++.++ ..++.++-+++++.||.+ .+ -+||.
T Consensus 14 ~~~~l~~~~~~G~d~vEl~~~-~p~~~~~~~~~---~~~~~~lk~~~~~~gl~~~~~~~-h~~~~--------------- 73 (281)
T PRK01060 14 LEGAVAEAAEIGANAFMIFTG-NPQQWKRKPLE---ELNIEAFKAACEKYGISPEDILV-HAPYL--------------- 73 (281)
T ss_pred HHHHHHHHHHcCCCEEEEECC-CCCCCcCCCCC---HHHHHHHHHHHHHcCCCCCceEE-ecceE---------------
Confidence 889999999999999998542 11221122222 236888999999999973 22 23431
Q ss_pred CCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 006681 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (635)
Q Consensus 147 ~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q 191 (635)
+.+-+.|+..+++..+.+++.++..+ .+ |.+.|.+.
T Consensus 74 ---~nl~~~d~~~r~~s~~~~~~~i~~A~--~l----ga~~vv~h 109 (281)
T PRK01060 74 ---INLGNPNKEILEKSRDFLIQEIERCA--AL----GAKLLVFH 109 (281)
T ss_pred ---ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12334566777777777777777665 33 44555554
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=82.61 E-value=2 Score=43.72 Aligned_cols=58 Identities=21% Similarity=0.333 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEEceecCccC----CcCCcc-----cccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 72 DLIQKAKDGGLDVIQTYVFWNGHE----PTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~tYVfWn~HE----P~~G~y-----dF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
+.|.-+|++|+|+|..-=++...+ -.+--| .|....+|.++++.|++.||+|||-.=|
T Consensus 8 ~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~ 74 (316)
T PF00128_consen 8 DKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVP 74 (316)
T ss_dssp HTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred HhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeec
Confidence 557789999999999753333211 111111 1445679999999999999999987533
No 68
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=82.56 E-value=4.8 Score=43.64 Aligned_cols=112 Identities=17% Similarity=0.274 Sum_probs=71.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-------ceecCccCCcCCccccc-C-hhhHHHHHHHHHHcCcEEEEecCceeeeecC
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQT-------YVFWNGHEPTQGNYYFQ-D-RYDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~t-------YVfWn~HEP~~G~ydF~-G-~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~ 136 (635)
.++.-+..|+.+|+.|+|+|=+ .|.+.--.|..-+..-. . ..|+.++++.++++|+|+|.|+=-|---.-
T Consensus 11 ~~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~~~~~ga~~~~i~D~~~l~~~l~e~gIY~IARIv~FkD~~l- 89 (316)
T PF13200_consen 11 SPERLDKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPLAREIGAVKPYIKDLKALVKKLKEHGIYPIARIVVFKDPVL- 89 (316)
T ss_pred CHHHHHHHHHHHHhcCCceEEEEEecCCceEEecCCCchhhhcccccccccCHHHHHHHHHHCCCEEEEEEEEecChHH-
Confidence 4566788999999999998863 34554444433322221 2 269999999999999999999732211000
Q ss_pred CCCCCcccccCC-CcccccCC-----hhhHHHHHHHHHHHHHHhhhcc
Q 006681 137 YGGFPVWLKYVP-GIEFRTDN-----GPFKAAMHKFTEKIVSMMKAEK 178 (635)
Q Consensus 137 ~GG~P~WL~~~p-~i~~Rt~n-----~~f~~~~~~~~~~I~~~ik~~~ 178 (635)
..--|.|-.... |-..|..+ .||.+++.+|.-.|++..++.+
T Consensus 90 a~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~G 137 (316)
T PF13200_consen 90 AEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLG 137 (316)
T ss_pred hhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcC
Confidence 011466655322 22233222 4788999999999999988554
No 69
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=82.00 E-value=18 Score=39.30 Aligned_cols=139 Identities=15% Similarity=0.245 Sum_probs=90.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHH---HcCcEEEEecCceeeeecCCCCCC
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ---QAGLYVHLRIGPYVCAEWNYGGFP 141 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~---e~GL~ViLR~GPYIcAEw~~GG~P 141 (635)
..|+..+.-++.||+.||+.--.|-.| |.|++-|++-++..- +.+|...|. |.+-.|..
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Yw-----------f~gk~lLe~p~~~~l~~~~~d~pFcl~---WAN~~w~~---- 116 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYW-----------FNGKRLLEKPLENLLASKEPDFPFCLC---WANENWTR---- 116 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeee-----------cCCchHHHHHHHHHHhcCCCCCcEEEE---ECCChhhh----
Confidence 578888999999999999998888777 467777877776664 345555555 22222211
Q ss_pred cccccCCCcccccCChhhH--HHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCCChHHHHHHHHHHHh
Q 006681 142 VWLKYVPGIEFRTDNGPFK--AAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 219 (635)
Q Consensus 142 ~WL~~~p~i~~Rt~n~~f~--~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~ 219 (635)
.|-.....+.+- ..|. +..+++++.|.+.+++..++--+|=||+++==-.+. ..-+++++.+++.|+
T Consensus 117 ~w~g~~~~~l~~---q~y~~~~d~~~~~~~l~~~F~D~rYikVdGKPv~~Iy~p~~~--------pd~~~~~~~wr~~a~ 185 (345)
T PF14307_consen 117 RWDGRNNEILIE---QKYSGEDDWKEHFRYLLPYFKDPRYIKVDGKPVFLIYRPGDI--------PDIKEMIERWREEAK 185 (345)
T ss_pred ccCCCCcccccc---ccCCchhHHHHHHHHHHHHhCCCCceeECCEEEEEEECcccc--------cCHHHHHHHHHHHHH
Confidence 122111222111 1121 224677788889999888777889999987322221 245789999999999
Q ss_pred hcCCccceEeecC
Q 006681 220 GLNTGVPWVMCKQ 232 (635)
Q Consensus 220 ~~g~~VPwi~c~~ 232 (635)
+.|++-+.+....
T Consensus 186 ~~G~~giyii~~~ 198 (345)
T PF14307_consen 186 EAGLPGIYIIAVQ 198 (345)
T ss_pred HcCCCceEEEEEe
Confidence 9999877665543
No 70
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=80.78 E-value=27 Score=38.71 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=52.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccC-hhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCCCcc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD-RYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVW 143 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G-~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~P~W 143 (635)
++....+++++++++|++.|+.. ..+ ..|-..+-.. ..++.++-++++++||.|. +-++-+.+..+..|
T Consensus 30 ~~~~~~e~i~~la~~GfdgVE~~---~~d-l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g----- 100 (382)
T TIGR02631 30 TALDPVEAVHKLAELGAYGVTFH---DDD-LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPVFKDG----- 100 (382)
T ss_pred CCcCHHHHHHHHHHhCCCEEEec---ccc-cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCccccCC-----
Confidence 34456799999999999999863 111 0111111110 2357899999999999975 33321111112222
Q ss_pred cccCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 144 L~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
.+=+.|+..+++.-+.+++.++.-+
T Consensus 101 -------~las~d~~vR~~ai~~~kraId~A~ 125 (382)
T TIGR02631 101 -------GFTSNDRSVRRYALRKVLRNMDLGA 125 (382)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334466666555555566565555
No 71
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=79.07 E-value=36 Score=35.08 Aligned_cols=126 Identities=16% Similarity=0.228 Sum_probs=72.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCCCccccc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~P~WL~~ 146 (635)
..|++.++.++++|++.|+..+. ..++ ....++++ ..++.++-++++++||.+. +.++.. ..+
T Consensus 21 ~~~~e~~~~~~~~G~~~iEl~~~-~~~~-~~~~~~~~-~~~~~~l~~~l~~~gl~i~~~~~~~~-------~~~------ 84 (283)
T PRK13209 21 ECWLEKLAIAKTAGFDFVEMSVD-ESDE-RLARLDWS-REQRLALVNALVETGFRVNSMCLSAH-------RRF------ 84 (283)
T ss_pred CCHHHHHHHHHHcCCCeEEEecC-cccc-chhccCCC-HHHHHHHHHHHHHcCCceeEEecccc-------ccc------
Confidence 46999999999999999998532 1111 01122333 3468899999999999875 332211 001
Q ss_pred CCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCCC-------hHHHHHHHHHHHh
Q 006681 147 VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAP-------GKAYAKWAAQMAV 219 (635)
Q Consensus 147 ~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~~~~-------~~~Y~~wl~~~a~ 219 (635)
.+-+.++.-++...+.+++.++..+ .+ |.+.|.+. +.. ..++.. -.+.++.+.++|+
T Consensus 85 ----~~~~~~~~~r~~~~~~~~~~i~~a~--~l----G~~~i~~~-----~~~-~~~~~~~~~~~~~~~~~l~~l~~~A~ 148 (283)
T PRK13209 85 ----PLGSEDDAVRAQALEIMRKAIQLAQ--DL----GIRVIQLA-----GYD-VYYEQANNETRRRFIDGLKESVELAS 148 (283)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEC-----Ccc-ccccccHHHHHHHHHHHHHHHHHHHH
Confidence 1123455556666666777777666 32 56777552 110 001111 1235666777777
Q ss_pred hcCCcc
Q 006681 220 GLNTGV 225 (635)
Q Consensus 220 ~~g~~V 225 (635)
+.|+.+
T Consensus 149 ~~GV~i 154 (283)
T PRK13209 149 RASVTL 154 (283)
T ss_pred HhCCEE
Confidence 777543
No 72
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=78.76 E-value=4.4 Score=39.69 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=31.8
Q ss_pred CCceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeeeccCCC--CceEEEeeeeecCcee
Q 006681 500 QDPLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGSLEN--PKLTFSKNVKLRPGVN 577 (635)
Q Consensus 500 ~~~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~--~~~~~~~~v~l~~G~n 577 (635)
.+..|+|.+.| ...+||||+.++...+ .| +..+..+ .--+++..--|++|.|
T Consensus 4 ~~A~l~isa~g-~Y~l~vNG~~V~~~~l---------------------~P----~~t~y~~~~~Y~tyDVt~~L~~G~N 57 (172)
T PF08531_consen 4 RSARLYISALG-RYELYVNGERVGDGPL---------------------AP----GWTDYDKRVYYQTYDVTPYLRPGEN 57 (172)
T ss_dssp ---EEEEEEES-EEEEEETTEEEEEE---------------------------------BTTEEEEEEEE-TTT--TTEE
T ss_pred eEEEEEEEeCe-eEEEEECCEEeeCCcc---------------------cc----ccccCCCceEEEEEeChHHhCCCCC
Confidence 45789998888 6789999999943321 01 1111111 1235554446999999
Q ss_pred EEEEEEe
Q 006681 578 KISLLST 584 (635)
Q Consensus 578 ~islLs~ 584 (635)
.|+++-.
T Consensus 58 ~iav~lg 64 (172)
T PF08531_consen 58 VIAVWLG 64 (172)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9988754
No 73
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.47 E-value=12 Score=39.62 Aligned_cols=81 Identities=22% Similarity=0.340 Sum_probs=62.9
Q ss_pred ceEEEccceEEECCEEeEEEEEE--eeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCccccc--ChhhHHHH
Q 006681 37 ASVSYDHKAVIINGQKRILISGS--IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRF 112 (635)
Q Consensus 37 ~~Vt~d~~~l~idGkr~~l~sG~--iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~--G~~dL~~F 112 (635)
..|... .+.|.+.|++++.|= +| +++.-.+..+++|++|+.+++.|.|=+.-. -+.|. |...|..+
T Consensus 14 ~~~~~~--~~~~g~~~~~~iaGPCsie----~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs----~~s~~G~g~~gl~~l 83 (266)
T PRK13398 14 TIVKVG--DVVIGGEEKIIIAGPCAVE----SEEQMVKVAEKLKELGVHMLRGGAFKPRTS----PYSFQGLGEEGLKIL 83 (266)
T ss_pred cEEEEC--CEEEcCCCEEEEEeCCcCC----CHHHHHHHHHHHHHcCCCEEEEeeecCCCC----CCccCCcHHHHHHHH
Confidence 345553 377777789999883 44 577778889999999999999998874433 34666 57889999
Q ss_pred HHHHHHcCcEEEEec
Q 006681 113 IKLVQQAGLYVHLRI 127 (635)
Q Consensus 113 l~la~e~GL~ViLR~ 127 (635)
-+.|++.||.++-.|
T Consensus 84 ~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 84 KEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHcCCCEEEee
Confidence 999999999988764
No 74
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=78.22 E-value=5.2 Score=41.87 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.8
Q ss_pred cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
+...++.++.+|+.||++|++ ..|..+.+ ..+..++|+.++++|+.|+-..|
T Consensus 83 q~~~~~yl~~~k~lGf~~IEi---------SdGti~l~-~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 83 QGKFDEYLEECKELGFDAIEI---------SDGTIDLP-EEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp TT-HHHHHHHHHHCT-SEEEE-----------SSS----HHHHHHHHHHHCCTTSEEEEEES
T ss_pred cChHHHHHHHHHHcCCCEEEe---------cCCceeCC-HHHHHHHHHHHHHCCCEEeeccc
Confidence 677899999999999999998 45555554 35777999999999999999988
No 75
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=77.96 E-value=53 Score=38.43 Aligned_cols=80 Identities=19% Similarity=0.267 Sum_probs=49.6
Q ss_pred cccHHHHHHHHHHCCCCEEEEc-eecCccCCcCCcc--------cccCh----hhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQGNY--------YFQDR----YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tY-VfWn~HEP~~G~y--------dF~G~----~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
++.=+..|.+|+...||.|+.| ..|.+|.|-|+.= |+.|+ .-+...|+.|++.||.++.=--=|-+-
T Consensus 117 ~~~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 117 AEDIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKYGMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHTT-EEEEEEESSEEE
T ss_pred chhHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHcCcceehhHhhhccc
Confidence 4567789999999999999999 8899999987643 34444 367889999999999988543222222
Q ss_pred ec--CCCCCCccccc
Q 006681 134 EW--NYGGFPVWLKY 146 (635)
Q Consensus 134 Ew--~~GG~P~WL~~ 146 (635)
+. ..|=.|.|-..
T Consensus 197 ~~~~~~gv~~eW~ly 211 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLY 211 (559)
T ss_dssp TT--S--SS-GGBEE
T ss_pred cCcccccCCchhhhh
Confidence 21 25567888854
No 76
>PRK14705 glycogen branching enzyme; Provisional
Probab=76.18 E-value=52 Score=41.94 Aligned_cols=55 Identities=20% Similarity=0.178 Sum_probs=38.4
Q ss_pred HHHHHHHCCCCEEEE-cee-------cCccC--CcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 73 LIQKAKDGGLDVIQT-YVF-------WNGHE--PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~t-YVf-------Wn~HE--P~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.|.-+|++|+|+|+. .|+ |.+.- ...=.=.|.+..||.+|++.|+++||.|||..
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 467889999999996 453 43110 00001134566899999999999999999884
No 77
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=76.03 E-value=8.6 Score=43.67 Aligned_cols=69 Identities=19% Similarity=0.333 Sum_probs=43.6
Q ss_pred EEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEc-ee---cCc-cC-CcCC--cccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 57 SGSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTY-VF---WNG-HE-PTQG--NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 57 sG~iHY~R~~pe~W~d~l~k~K-a~GlN~I~tY-Vf---Wn~-HE-P~~G--~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
-|+-|.-...++.|+..|+.++ +.|+..|+.. +| ... .| ..+| .|||+ .|+.+++...++||+-.+..
T Consensus 28 ~~~g~a~~~l~~~~q~~l~~~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~---~lD~i~D~l~~~g~~P~vel 104 (486)
T PF01229_consen 28 VGSGRANLLLRADWQEQLRELQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFT---YLDQILDFLLENGLKPFVEL 104 (486)
T ss_dssp EEES-GGGGGBHHHHHHHHHHHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--H---HHHHHHHHHHHCT-EEEEEE
T ss_pred cCCCchHHHhhHHHHHHHHHHHhccCceEEEEEeeccCchhhccccccCCCCcCChH---HHHHHHHHHHHcCCEEEEEE
Confidence 3455555567888999888886 7899999863 22 111 11 1223 39999 89999999999999988776
Q ss_pred C
Q 006681 128 G 128 (635)
Q Consensus 128 G 128 (635)
|
T Consensus 105 ~ 105 (486)
T PF01229_consen 105 G 105 (486)
T ss_dssp -
T ss_pred E
Confidence 6
No 78
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=75.99 E-value=33 Score=34.86 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=35.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEE
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViL 125 (635)
.+++.++++++.|++.|+....+ ..++..+.++++++||.+..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~--------------~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY--------------DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc--------------cCCHHHHHHHHHHcCCeEEE
Confidence 48899999999999999984321 13588899999999999863
No 79
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=75.28 E-value=48 Score=34.00 Aligned_cols=52 Identities=13% Similarity=0.035 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi 124 (635)
..+++.|+.++++|++.|+...-. .|+-.+ +++ ..++.++-++++++||.|.
T Consensus 13 ~~l~~~l~~~~~~G~~~vEl~~~~-~~~~~~---~~~-~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 13 LPIEHAFRDASELGYDGIEIWGGR-PHAFAP---DLK-AGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CCHHHHHHHHHHcCCCEEEEccCC-cccccc---ccC-chHHHHHHHHHHHcCCeEE
Confidence 358999999999999999983210 011111 121 2478889999999999875
No 80
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=75.11 E-value=47 Score=34.02 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=37.5
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEE
Q 006681 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (635)
Q Consensus 60 iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViL 125 (635)
+.|-+.+ +++.|++++++|++.|+.. . |. ..++.++.++++++||.+..
T Consensus 10 ~~~~~~~---l~~~l~~~a~~Gf~~VEl~---~---~~--------~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 10 MLFGEYD---FLARFEKAAQCGFRGVEFM---F---PY--------DYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hhccCCC---HHHHHHHHHHhCCCEEEEc---C---CC--------CCCHHHHHHHHHHcCCcEEE
Confidence 4444443 7789999999999999983 1 11 13799999999999999854
No 81
>PRK12313 glycogen branching enzyme; Provisional
Probab=72.34 E-value=8.6 Score=45.17 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHCCCCEEEE-cee-------cCccCC--cCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 74 IQKAKDGGLDVIQT-YVF-------WNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 74 l~k~Ka~GlN~I~t-YVf-------Wn~HEP--~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
|.-+|++|+|+|.. +|+ |...-. ..=.=.|.+..||.+||+.|+++||.|||-.
T Consensus 177 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 177 IPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 57789999999995 553 211000 0000135667899999999999999999984
No 82
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=71.14 E-value=9 Score=46.12 Aligned_cols=61 Identities=20% Similarity=0.202 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHCCCCEEEE-cee-------cCccCC---cCCcccccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 68 EMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEP---TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~t-YVf-------Wn~HEP---~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
+.|++.|..+|++|+|+|+. .|+ |..+-. .+ .-.|....+|.+||+.|+++||.|||-.=|
T Consensus 251 ~~~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~ 322 (758)
T PLN02447 251 EFADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDVVH 322 (758)
T ss_pred HHHHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 44788899999999999996 232 332211 01 113556689999999999999999988543
No 83
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=71.00 E-value=27 Score=41.62 Aligned_cols=110 Identities=15% Similarity=0.086 Sum_probs=67.2
Q ss_pred ccHHHHHHHHHHCCCCEEE---------------EceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceee
Q 006681 68 EMWPDLIQKAKDGGLDVIQ---------------TYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~---------------tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIc 132 (635)
+.-...|+.+|+.|+|+|- .|++| -|=| |+-|.= |=. ..+++.+.|+.|..+..||--
T Consensus 334 ~~L~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yfP~-~~lp--~r~d~f---~~~-aw~l~~r~~v~v~AWmp~~~~ 406 (671)
T PRK14582 334 RNIDVLIQRVKDMQISTVYLQAFADPDGDGLVKELYFPN-RLLP--MRADLF---NRV-AWQLRTRAGVNVYAWMPVLSF 406 (671)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCCCCCccccccccCc-cccc--cccCCc---CHH-HHHHHHhhCCEEEEeccceee
Confidence 5567899999999999985 46667 3333 333211 111 345589999999999999853
Q ss_pred e---------ecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccc
Q 006681 133 A---------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENE 195 (635)
Q Consensus 133 A---------Ew~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENE 195 (635)
. +++..+-|.-.+ |+-..| =.||..++++|++.|++-++.+ .+|=++|...+
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~r--l~P~~pe~r~~i~~i~~dla~~-------~~~dGilf~Dd 467 (671)
T PRK14582 407 DLDPTLPRVKRLDTGEGKAQIH--PEQYRR--LSPFDDRVRAQVGMLYEDLAGH-------AAFDGILFHDD 467 (671)
T ss_pred ccCCCcchhhhccccCCccccC--CCCCcC--CCCCCHHHHHHHHHHHHHHHHh-------CCCceEEeccc
Confidence 1 222222222221 111123 2467889999999999888843 24555555554
No 84
>PLN02361 alpha-amylase
Probab=70.63 E-value=16 Score=40.92 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHHHHHHCCCCEEEEc-ee--cCccCCcCCc-cc----ccChhhHHHHHHHHHHcCcEEEEec
Q 006681 71 PDLIQKAKDGGLDVIQTY-VF--WNGHEPTQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tY-Vf--Wn~HEP~~G~-yd----F~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.|.-+|++|+++|-+. ++ ...|--.+.. |+ |....+|.++|+.|+++||.||+-.
T Consensus 32 ~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 32 EGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred HHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEE
Confidence 345666899999999875 33 1122222222 22 4556899999999999999999875
No 85
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=70.03 E-value=2.2 Score=43.45 Aligned_cols=57 Identities=16% Similarity=0.274 Sum_probs=45.5
Q ss_pred HHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceee
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIc 132 (635)
-...+++.+.|.+.|.+.++|..-.+..-.+..+ ++.++.+.|++.||.||+. ||..
T Consensus 79 ~~~ve~A~~~GAd~vd~vi~~~~~~~~~~~~~~~---~i~~v~~~~~~~gl~vIlE--~~l~ 135 (236)
T PF01791_consen 79 VAEVEEAIRLGADEVDVVINYGALGSGNEDEVIE---EIAAVVEECHKYGLKVILE--PYLR 135 (236)
T ss_dssp HHHHHHHHHTT-SEEEEEEEHHHHHTTHHHHHHH---HHHHHHHHHHTSEEEEEEE--ECEC
T ss_pred HHHHHHHHHcCCceeeeeccccccccccHHHHHH---HHHHHHHHHhcCCcEEEEE--EecC
Confidence 5678899999999999999997665554444444 8999999999999999999 4543
No 86
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=68.83 E-value=8.3 Score=40.87 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=48.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCc-CCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
.+.+..++.++++|+.||.+=...+=...+... -+.|.|.-. -|..++++.++++|+++++.+=|+|+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~ 92 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQ 92 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 466778899999999996654333332222221 134554422 289999999999999999998888864
No 87
>PRK10785 maltodextrin glucosidase; Provisional
Probab=68.71 E-value=11 Score=44.01 Aligned_cols=57 Identities=19% Similarity=0.227 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCEEEE-ceecC--ccCCcCCcc-----cccChhhHHHHHHHHHHcCcEEEEec
Q 006681 71 PDLIQKAKDGGLDVIQT-YVFWN--GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~t-YVfWn--~HEP~~G~y-----dF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.|.-+|++|+|+|-. +||=+ .|---..-| .|.+..||.++++.|++.||+|||-.
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 35677789999999996 56632 221111111 14567899999999999999999873
No 88
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=68.03 E-value=9.1 Score=44.17 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHCCCCEEEE-ceecCccCCcCCccc----------ccChhhHHHHHHHHHHcCcEEEEec
Q 006681 69 MWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~~G~yd----------F~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
-+.+.|.-+|++|+|+|-. .+|-+-.. ...|+ |....||.++++.|+++||+|||-.
T Consensus 28 gi~~~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 28 GIIEKLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHhHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567788899999999986 45532111 01222 4566899999999999999999874
No 89
>PLN00196 alpha-amylase; Provisional
Probab=66.19 E-value=34 Score=38.57 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=40.1
Q ss_pred HHHHHHHHHCCCCEEEEc-eecC--ccCCcCCc-cc-----ccChhhHHHHHHHHHHcCcEEEEec
Q 006681 71 PDLIQKAKDGGLDVIQTY-VFWN--GHEPTQGN-YY-----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tY-VfWn--~HEP~~G~-yd-----F~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.|.-+|++|+++|-.. ++=+ .|--.+.. |+ |....+|.++++.|++.||.||+-.
T Consensus 47 ~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 47 MGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356677899999999875 4432 12222221 22 3445799999999999999999985
No 90
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=66.12 E-value=12 Score=43.70 Aligned_cols=55 Identities=24% Similarity=0.420 Sum_probs=37.5
Q ss_pred HHHHHHHHCCCCEEEE-cee---------------cCccC-----CcCCccc----cc--ChhhHHHHHHHHHHcCcEEE
Q 006681 72 DLIQKAKDGGLDVIQT-YVF---------------WNGHE-----PTQGNYY----FQ--DRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~t-YVf---------------Wn~HE-----P~~G~yd----F~--G~~dL~~Fl~la~e~GL~Vi 124 (635)
+.|.-+|++|+|+|+. +|+ |...- |. +.|- +. ...+|.+|++.|+++||.||
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~-~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~Vi 246 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPE-GSYSTNPYDPATRIRELKQMIQALHENGIRVI 246 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcC-hhhhcCCCccchHHHHHHHHHHHHHHCCCEEE
Confidence 3588999999999996 454 32220 10 0110 10 13689999999999999999
Q ss_pred Eec
Q 006681 125 LRI 127 (635)
Q Consensus 125 LR~ 127 (635)
|-.
T Consensus 247 lDv 249 (605)
T TIGR02104 247 MDV 249 (605)
T ss_pred EEE
Confidence 984
No 91
>PLN02960 alpha-amylase
Probab=66.03 E-value=14 Score=45.14 Aligned_cols=56 Identities=23% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHHHHHHCCCCEEEE-cee-------cCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 72 DLIQKAKDGGLDVIQT-YVF-------WNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~t-YVf-------Wn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.|.-+|++|+|+|+. .|+ |.+.--- .=.=.|....+|.+||+.|+++||.|||-.
T Consensus 421 ~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 421 KVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred HHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4588899999999996 454 4321000 000124456899999999999999999985
No 92
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=65.92 E-value=62 Score=33.20 Aligned_cols=92 Identities=13% Similarity=0.132 Sum_probs=59.3
Q ss_pred HHHHHHHHHHCCCCEEEEceecCccCCcCCcc-cccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCC
Q 006681 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVP 148 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~y-dF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p 148 (635)
-.+.|+++.+.|++.|+.. ..+|..-.- +++ ..++.++.++++++||.+.+- +||.
T Consensus 12 ~~~~~~~~~~~G~~~vel~----~~~~~~~~~~~~~-~~~~~~l~~~~~~~gl~ls~h-~p~~----------------- 68 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLF----LGNPRSWKGVRLS-EETAEKFKEALKENNIDVSVH-APYL----------------- 68 (273)
T ss_pred HhHHHHHHHHcCCCEEEEE----CCCCCCCCCCCCC-HHHHHHHHHHHHHcCCCEEEE-CCce-----------------
Confidence 3478999999999999983 333322110 222 236889999999999986542 3431
Q ss_pred CcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 006681 149 GIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (635)
Q Consensus 149 ~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q 191 (635)
+.+.+.++..+++..+.+++.++..+ .+ |.++|.+.
T Consensus 69 -~nl~s~d~~~r~~~~~~l~~~i~~A~--~l----Ga~~vv~h 104 (273)
T smart00518 69 -INLASPDKEKVEKSIERLIDEIKRCE--EL----GIKALVFH 104 (273)
T ss_pred -ecCCCCCHHHHHHHHHHHHHHHHHHH--Hc----CCCEEEEc
Confidence 12445677777777777777777666 32 45666553
No 93
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=65.84 E-value=16 Score=29.58 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=43.5
Q ss_pred cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEE
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViL 125 (635)
|..-.+.++-+.+.|+|...+|++= ++. ++.+.+.. .|.++..+..+++|..|.|
T Consensus 12 pG~La~v~~~l~~~~inI~~i~~~~--~~~-~~~~rl~~-~~~~~~~~~L~~~G~~v~~ 66 (66)
T cd04908 12 PGRLAAVTEILSEAGINIRALSIAD--TSE-FGILRLIV-SDPDKAKEALKEAGFAVKL 66 (66)
T ss_pred CChHHHHHHHHHHCCCCEEEEEEEe--cCC-CCEEEEEE-CCHHHHHHHHHHCCCEEEC
Confidence 5566788999999999999999843 333 58777765 5678999999999988754
No 94
>PRK09505 malS alpha-amylase; Reviewed
Probab=65.33 E-value=15 Score=43.87 Aligned_cols=58 Identities=12% Similarity=0.179 Sum_probs=42.2
Q ss_pred HHHHHHHHHHCCCCEEEE-ceecCccCCc----CC------------------cccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QG------------------NYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~----~G------------------~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
+.+.|.-+|++|+|+|-+ .++=+.|... .| .-.|....||.++++.|+++||+|||-
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 456678899999999985 5654443321 11 113556689999999999999999988
Q ss_pred c
Q 006681 127 I 127 (635)
Q Consensus 127 ~ 127 (635)
.
T Consensus 312 ~ 312 (683)
T PRK09505 312 V 312 (683)
T ss_pred E
Confidence 5
No 95
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=65.32 E-value=12 Score=43.35 Aligned_cols=53 Identities=23% Similarity=0.338 Sum_probs=38.9
Q ss_pred HHHHHHHHCCCCEEEE-cee-------cCcc-----CCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 72 DLIQKAKDGGLDVIQT-YVF-------WNGH-----EPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~t-YVf-------Wn~H-----EP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.|.-+|++|+|+|+. +|+ |.+. .|.+ .|.+..+|.+|++.|+++||.|||-.
T Consensus 115 ~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~---~~G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 115 EKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHN---AYGGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred HhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCcccccc---ccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3577899999999996 453 3221 1111 24567899999999999999999984
No 96
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=64.74 E-value=16 Score=42.09 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=41.0
Q ss_pred ccHHHHHHHHHHCCCCEEEE-ceecCccCCcCCccc----------ccChhhHHHHHHHHHHcCcEEEEe
Q 006681 68 EMWPDLIQKAKDGGLDVIQT-YVFWNGHEPTQGNYY----------FQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~~G~yd----------F~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
.-+.+.|.-+|++|+|+|-. ++|=+.. ....|| |.+..|+.++++.|++.||+|||-
T Consensus 28 ~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD 95 (539)
T TIGR02456 28 PGLTSKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIID 95 (539)
T ss_pred HHHHHhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEE
Confidence 34567788899999999986 4541100 011222 456689999999999999999986
No 97
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=63.29 E-value=17 Score=42.15 Aligned_cols=55 Identities=15% Similarity=0.262 Sum_probs=40.8
Q ss_pred HHHHHHHHHHCCCCEEEE-ceecCccCCcC-Ccc----------cccChhhHHHHHHHHHHcCcEEEEec
Q 006681 70 WPDLIQKAKDGGLDVIQT-YVFWNGHEPTQ-GNY----------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~~-G~y----------dF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.+.|.-+|++|+++|-+ .++-. |.. .-| +|....||.++++.|+++||+|||-.
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~---~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVS---PQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCC---CCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 457788899999999986 45522 211 122 24456899999999999999999874
No 98
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=62.88 E-value=17 Score=37.96 Aligned_cols=52 Identities=12% Similarity=0.332 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
...++.++.+|+.|+++|++ ..|..++. ..+..++|+.++++||.|.-..|.
T Consensus 71 ~~~~~Yl~~~k~lGf~~IEi---------S~G~~~i~-~~~~~rlI~~~~~~g~~v~~EvG~ 122 (237)
T TIGR03849 71 GKFDEYLNECDELGFEAVEI---------SDGSMEIS-LEERCNLIERAKDNGFMVLSEVGK 122 (237)
T ss_pred hhHHHHHHHHHHcCCCEEEE---------cCCccCCC-HHHHHHHHHHHHhCCCeEeccccc
Confidence 66788889999999999988 55666665 457889999999999999988774
No 99
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=62.44 E-value=21 Score=37.96 Aligned_cols=69 Identities=20% Similarity=0.358 Sum_probs=52.1
Q ss_pred CCCCcccHHHHHHHHHHCCC--CEEEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 63 PRSTPEMWPDLIQKAKDGGL--DVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 63 ~R~~pe~W~d~l~k~Ka~Gl--N~I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
...+.+.-.+.++++++.|+ ++|-+=..|- ..-|.|.|.-. -|..++++..++.|+++++.+=|+|+.+
T Consensus 25 ~~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~---~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~ 97 (303)
T cd06592 25 ADINQETVLNYAQEIIDNGFPNGQIEIDDNWE---TCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTD 97 (303)
T ss_pred cCcCHHHHHHHHHHHHHcCCCCCeEEeCCCcc---ccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCC
Confidence 34677888999999999996 4555544452 34566666532 3899999999999999999999998643
No 100
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=62.31 E-value=23 Score=29.08 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=18.4
Q ss_pred eEEEeecccEEEEEEcCeeccccc
Q 006681 503 LLTIWSAGHALQVFINGQLSGKRS 526 (635)
Q Consensus 503 ~L~v~s~gh~lhvFVNg~~~~~~~ 526 (635)
.|+|.|.=.=..|||||+++|..+
T Consensus 3 ~l~V~s~p~gA~V~vdg~~~G~tp 26 (71)
T PF08308_consen 3 TLRVTSNPSGAEVYVDGKYIGTTP 26 (71)
T ss_pred EEEEEEECCCCEEEECCEEeccCc
Confidence 577777755678999999996444
No 101
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=61.14 E-value=38 Score=36.01 Aligned_cols=109 Identities=16% Similarity=0.212 Sum_probs=67.5
Q ss_pred EEEEEEeeCCCCCc-ccHH---HHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 54 ILISGSIHYPRSTP-EMWP---DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 54 ~l~sG~iHY~R~~p-e~W~---d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
+-+++..|+..-|. ...+ ++|++--++|.+.+-|=.| ||.+ .+.+|++.|++.|+.+=+-||.
T Consensus 130 f~igva~~Pe~Hp~~~~~~~d~~~L~~Ki~aGA~f~iTQ~~----------Fd~~---~~~~f~~~~~~~gi~~PIi~GI 196 (281)
T TIGR00677 130 FCIGVAGYPEGHPEAESVELDLKYLKEKVDAGADFIITQLF----------YDVD---NFLKFVNDCRAIGIDCPIVPGI 196 (281)
T ss_pred eEEEEEECCCCCCCCCCHHHHHHHHHHHHHcCCCEeeccce----------ecHH---HHHHHHHHHHHcCCCCCEEeec
Confidence 56777777655221 1222 2343333699999988444 3333 7889999999997765455555
Q ss_pred eee---------eecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 130 YVC---------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 130 YIc---------AEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
..+ +||..--+|.|+.+.=. ....+++..++.--++..++++.+++
T Consensus 197 ~pi~s~~~~~~~~~~~Gi~vP~~l~~~l~-~~~~~~~~~~~~gi~~a~~~~~~l~~ 251 (281)
T TIGR00677 197 MPINNYASFLRRAKWSKTKIPQEIMSRLE-PIKDDDEAVRDYGIELIVEMCQKLLA 251 (281)
T ss_pred cccCCHHHHHHHHhcCCCCCCHHHHHHHH-hccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 443 57777778999976200 01233455566666777777777773
No 102
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=59.60 E-value=99 Score=34.61 Aligned_cols=89 Identities=20% Similarity=0.284 Sum_probs=56.5
Q ss_pred eCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcC----CcccccCh---hhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 61 HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDR---YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 61 HY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~----G~ydF~G~---~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
.|+..+.+.-.+.+++|++.|++.+.+=--|....... |.+--.-. .-|..+++.+++.||..=|+..|.+.+
T Consensus 51 ~~~d~~e~~i~~~a~~~~~~G~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~ 130 (394)
T PF02065_consen 51 YYFDITEEKILELADAAAELGYEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVS 130 (394)
T ss_dssp HTTG--HHHHHHHHHHHHHHT-SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEE
T ss_pred cCcCCCHHHHHHHHHHHHHhCCEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEecccccc
Confidence 35567777778899999999998766544475432111 22211100 249999999999999999999888764
Q ss_pred ec--CCCCCCcccccCCC
Q 006681 134 EW--NYGGFPVWLKYVPG 149 (635)
Q Consensus 134 Ew--~~GG~P~WL~~~p~ 149 (635)
+= -+-..|.|+...++
T Consensus 131 ~~S~l~~~hPdw~l~~~~ 148 (394)
T PF02065_consen 131 PDSDLYREHPDWVLRDPG 148 (394)
T ss_dssp SSSCHCCSSBGGBTCCTT
T ss_pred chhHHHHhCccceeecCC
Confidence 31 13347999987654
No 103
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=59.41 E-value=54 Score=39.29 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=36.5
Q ss_pred HHHHHHCCCCEEEE-ceecCccC---CcCC-----ccc----------c---cChhhHHHHHHHHHHcCcEEEEec
Q 006681 74 IQKAKDGGLDVIQT-YVFWNGHE---PTQG-----NYY----------F---QDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 74 l~k~Ka~GlN~I~t-YVfWn~HE---P~~G-----~yd----------F---~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
|.-+|++|+|+|+. +||=...+ ...| -|| | ....+|.++|+.|+++||.|||..
T Consensus 190 LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 190 IDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred hHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 66789999999996 45511111 1111 111 1 124689999999999999999984
No 104
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=59.23 E-value=18 Score=42.82 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=41.1
Q ss_pred cccHHHHHHHHHHCCCCEEEE-cee-------cCccCCcCCcc------cccChhhHHHHHHHHHHcCcEEEEe
Q 006681 67 PEMWPDLIQKAKDGGLDVIQT-YVF-------WNGHEPTQGNY------YFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~t-YVf-------Wn~HEP~~G~y------dF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
.+.=.+.|.-+|++|+++||. .|. |..- |.. .|....||.+||+.|+++||-|||.
T Consensus 164 ~e~a~~llpYl~elG~T~IELMPv~e~p~~~sWGYq----~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD 233 (628)
T COG0296 164 FELAIELLPYLKELGITHIELMPVAEHPGDRSWGYQ----GTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILD 233 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEcccccCCCCCCCCCC----cceeccccccCCCHHHHHHHHHHHHHcCCEEEEE
Confidence 344456788899999999996 231 4421 111 2445579999999999999999997
No 105
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=58.72 E-value=18 Score=34.38 Aligned_cols=51 Identities=27% Similarity=0.518 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHcCcEEEEecCceeeeecC-CCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN-YGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 107 ~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~-~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
.||..||++|++.|+.|++=+-| +++.|. +-|+| ++.-++++++|-.++++
T Consensus 36 ~Dl~l~L~~~k~~g~~~lfVi~P-vNg~wydytG~~------------------~~~r~~~y~kI~~~~~~ 87 (130)
T PF04914_consen 36 DDLQLLLDVCKELGIDVLFVIQP-VNGKWYDYTGLS------------------KEMRQEYYKKIKYQLKS 87 (130)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE-----HHHHHHTT--------------------HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCceEEEecC-CcHHHHHHhCCC------------------HHHHHHHHHHHHHHHHH
Confidence 49999999999999999877655 566552 11221 34557889999888884
No 106
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=58.39 E-value=39 Score=37.03 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=60.0
Q ss_pred ceEEEccceEEECCEEeEEEEE--EeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccC--hhhHHHH
Q 006681 37 ASVSYDHKAVIINGQKRILISG--SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRF 112 (635)
Q Consensus 37 ~~Vt~d~~~l~idGkr~~l~sG--~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G--~~dL~~F 112 (635)
..|... .+.|.|.+++++.| ++| +++.-.+.-+.+|++|.++++.|+|= |+---|.|.| ..-|.-+
T Consensus 80 t~v~~~--~~~ig~~~~~~IAGPCsiE----s~e~~~~~A~~lk~~ga~~~r~~~fK----pRTsp~sf~G~g~~gL~~L 149 (335)
T PRK08673 80 TVVKVG--DVEIGGGKPVVIAGPCSVE----SEEQILEIARAVKEAGAQILRGGAFK----PRTSPYSFQGLGEEGLKLL 149 (335)
T ss_pred CEEEEC--CEEECCCceEEEEecCccC----CHHHHHHHHHHHHHhchhhccCcEec----CCCCCcccccccHHHHHHH
Confidence 335553 36777888888988 122 45666677888889999999999995 4444478876 5677778
Q ss_pred HHHHHHcCcEEEEec
Q 006681 113 IKLVQQAGLYVHLRI 127 (635)
Q Consensus 113 l~la~e~GL~ViLR~ 127 (635)
.+.|++.||.++-.+
T Consensus 150 ~~~~~~~Gl~v~tev 164 (335)
T PRK08673 150 AEAREETGLPIVTEV 164 (335)
T ss_pred HHHHHHcCCcEEEee
Confidence 888999999988764
No 107
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=58.16 E-value=18 Score=45.95 Aligned_cols=56 Identities=25% Similarity=0.345 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-ceecCccCCc---CCc-----cc----------cc--ChhhHHHHHHHHHHcCcEEEEec
Q 006681 72 DLIQKAKDGGLDVIQT-YVFWNGHEPT---QGN-----YY----------FQ--DRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~t-YVfWn~HEP~---~G~-----yd----------F~--G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.|.-+|++|+|+|+. +||=...|.. .|. || |. +..++.++++.|+++||.|||..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 4566899999999996 5653322221 110 22 23 66899999999999999999984
No 108
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=56.88 E-value=58 Score=36.84 Aligned_cols=92 Identities=17% Similarity=0.285 Sum_probs=60.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ceecCccCCc----CCccccc-----C-----hhhHHHHHHHHH-HcCcEEEEecCc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQT-YVFWNGHEPT----QGNYYFQ-----D-----RYDLVRFIKLVQ-QAGLYVHLRIGP 129 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~t-YVfWn~HEP~----~G~ydF~-----G-----~~dL~~Fl~la~-e~GL~ViLR~GP 129 (635)
+-+.|++.|+.+++.|.|+|.. ++---....+ .++..|+ . ..++.+|++.++ ++||.++..+
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv-- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDPDFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV-- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcChhhcCCCccccHHHHHHHHHHHHHHcCceEEEEE--
Confidence 4469999999999999999973 2322222111 1222221 1 149999999885 7999987664
Q ss_pred eeeeecCCCCC-CcccccCCCcccccCChhhHHHH
Q 006681 130 YVCAEWNYGGF-PVWLKYVPGIEFRTDNGPFKAAM 163 (635)
Q Consensus 130 YIcAEw~~GG~-P~WL~~~p~i~~Rt~n~~f~~~~ 163 (635)
=||.-.. -.||.+.|+.-.--.+.|+++..
T Consensus 98 ----V~NHtA~nS~Wl~eHPEagYN~~nsPHL~pA 128 (423)
T PF14701_consen 98 ----VLNHTANNSPWLREHPEAGYNLENSPHLRPA 128 (423)
T ss_pred ----eeccCcCCChHHHhCcccccCCCCCcchhhH
Confidence 2555443 57999999876666666776543
No 109
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=56.56 E-value=51 Score=33.90 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=53.1
Q ss_pred CCccccc-ChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 98 QGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 98 ~G~ydF~-G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
.|...+. +..++..+++.|++.|++|++.+|= |..+.+.. + ..++ +.-++|.+.|++.+++
T Consensus 36 ~G~l~~~~~~~~~~~~~~~~~~~~~kvl~sigg-----~~~~~~~~-~---------~~~~---~~r~~fi~~lv~~~~~ 97 (253)
T cd06545 36 NGTLNANPVRSELNSVVNAAHAHNVKILISLAG-----GSPPEFTA-A---------LNDP---AKRKALVDKIINYVVS 97 (253)
T ss_pred CCeEEecCcHHHHHHHHHHHHhCCCEEEEEEcC-----CCCCcchh-h---------hcCH---HHHHHHHHHHHHHHHH
Confidence 4555554 3457889999999999999999871 22111100 1 1122 2346789999999986
Q ss_pred ccccccCCCcEEEeccccccCCccccCCCChHHHHHHHHHHHh
Q 006681 177 EKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAV 219 (635)
Q Consensus 177 ~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~ 219 (635)
+++ + ++.|+=|+.... ...|...++++-.
T Consensus 98 ~~~---D-----GIdiDwE~~~~~------~~~~~~fv~~Lr~ 126 (253)
T cd06545 98 YNL---D-----GIDVDLEGPDVT------FGDYLVFIRALYA 126 (253)
T ss_pred hCC---C-----ceeEEeeccCcc------HhHHHHHHHHHHH
Confidence 654 1 345666664321 3445555544433
No 110
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=56.00 E-value=30 Score=42.18 Aligned_cols=64 Identities=19% Similarity=0.102 Sum_probs=45.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEE-ceecC----ccCCcCC-----cccccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQT-YVFWN----GHEPTQG-----NYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~t-YVfWn----~HEP~~G-----~ydF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
+-+.+.+.|.-++++|+++|.. ++|=+ .|--..- .-.|.+..++.+|++.|+++||.|||-+=|
T Consensus 14 tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVp 87 (825)
T TIGR02401 14 TFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVP 87 (825)
T ss_pred CHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4566889999999999999976 44411 1111100 112557899999999999999999998644
No 111
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=54.91 E-value=52 Score=31.41 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=63.9
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCc------CCcccccChhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCC
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPT------QGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGF 140 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~------~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~ 140 (635)
+.-++..+.+++.|+.++....+-+...+. +.+ .-.....+.+.+++|++.|...+ +.+|.+
T Consensus 27 ~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~g~~---------- 95 (213)
T PF01261_consen 27 DEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHSGRY---------- 95 (213)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEECTTE----------
T ss_pred HHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecCccc----------
Confidence 345677888999999977755443333221 111 22234589999999999998865 555530
Q ss_pred CcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCc
Q 006681 141 PVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPV 199 (635)
Q Consensus 141 P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~ 199 (635)
+. .-....+.-.+.+.+.+++|+++.++++ |-+.+||..+..
T Consensus 96 ~~--------~~~~~~~~~~~~~~~~l~~l~~~a~~~g---------v~i~lE~~~~~~ 137 (213)
T PF01261_consen 96 PS--------GPEDDTEENWERLAENLRELAEIAEEYG---------VRIALENHPGPF 137 (213)
T ss_dssp SS--------STTSSHHHHHHHHHHHHHHHHHHHHHHT---------SEEEEE-SSSSS
T ss_pred cc--------ccCCCHHHHHHHHHHHHHHHHhhhhhhc---------ceEEEecccCcc
Confidence 00 0112233556777778888888887443 446689887764
No 112
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=54.87 E-value=29 Score=30.08 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=26.5
Q ss_pred CCcEEEeccccc-cCCccccC----C-CChHHHHHHHHHHH---hhcCCccceEee
Q 006681 184 GGPIILSQIENE-FGPVEWDI----G-APGKAYAKWAAQMA---VGLNTGVPWVMC 230 (635)
Q Consensus 184 GGpII~~QIENE-yg~~~~~~----~-~~~~~Y~~wl~~~a---~~~g~~VPwi~c 230 (635)
...|.+++|=|| -++....+ + .....+.+|+++++ |+.+...|+..+
T Consensus 8 ~~~Il~Wdl~NE~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~pvt~g 63 (88)
T PF12876_consen 8 DPRILAWDLWNEPPNNWADGYPAEWGDPKAEAYAEWLKEAFRWIRAVDPSQPVTSG 63 (88)
T ss_dssp GGGEEEEESSTTTT-TT-TT-TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-EE--
T ss_pred CCCEEEEEeecCCCCcccccccccccchhHHHHHHHHHHHHHHHHHhCCCCcEEee
Confidence 357999999999 55322111 1 23466777777774 567777776543
No 113
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=52.80 E-value=24 Score=38.30 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=40.8
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee---cCccCCcCCcc--------cccChhhHHHHHHHHHHcCcEEEEec
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVF---WNGHEPTQGNY--------YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVf---Wn~HEP~~G~y--------dF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+..-.++++.+|..|+|++-+=+= =++.=|....+ .|- |+.-||+-|+|.|||+|.|+
T Consensus 75 ~kk~~de~fk~ikdn~~Na~ViD~Kdd~G~lty~s~d~~~~~~~sv~~f~---Di~~~iKkaKe~giY~IARi 144 (400)
T COG1306 75 LKKRLDELFKLIKDNNINAFVIDVKDDYGELTYPSSDEINKYTKSVNKFK---DIEPVIKKAKENGIYAIARI 144 (400)
T ss_pred ChhHHHHHHHHHHhCCCCEEEEEecCCCccEeccccchhhhhhhcccccc---ccHHHHHHHHhcCeEEEEEE
Confidence 4566778999999999998754221 01111222211 233 89999999999999999996
No 114
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=52.57 E-value=39 Score=35.17 Aligned_cols=65 Identities=12% Similarity=0.207 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcc--cccC--hhhHHHHHHHHHHcCcEEEEecCcee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY--YFQD--RYDLVRFIKLVQQAGLYVHLRIGPYV 131 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~y--dF~G--~~dL~~Fl~la~e~GL~ViLR~GPYI 131 (635)
+.++..+.++++++.||-+=...+=+...+. .+.+ +|.- --|..++++..+++|++|++.+=|+|
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~~~lD~~~~~~-~~~f~~~~d~~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 22 DQDKVLEVIDGMRENDIPLDGFVLDDDYTDG-YGDFTFDWDAGKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred CHHHHHHHHHHHHHcCCCccEEEECcccccC-CceeeeecChhhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 6677889999999999885555544443333 3455 4432 23899999999999999999998887
No 115
>PF03659 Glyco_hydro_71: Glycosyl hydrolase family 71 ; InterPro: IPR005197 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,3-glucanases belonging to glycoside hydrolase family 71 (GH71 from CAZY).
Probab=52.39 E-value=55 Score=36.48 Aligned_cols=54 Identities=17% Similarity=0.236 Sum_probs=42.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.+.|+++|+.+|++|||....=+- ....+.- ..|...++.|++.|+++.|-+
T Consensus 14 yt~~dw~~di~~A~~~GIDgFaLNig------~~d~~~~---~~l~~a~~AA~~~gFKlf~Sf 67 (386)
T PF03659_consen 14 YTQEDWEADIRLAQAAGIDGFALNIG------SSDSWQP---DQLADAYQAAEAVGFKLFFSF 67 (386)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecc------cCCcccH---HHHHHHHHHHHhcCCEEEEEe
Confidence 38899999999999999998876442 1222222 368888999999999998886
No 116
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=52.28 E-value=38 Score=41.65 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=46.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEc-eecCccCCcCC---cc---c-------ccChhhHHHHHHHHHHcCcEEEEecCce
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQG---NY---Y-------FQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tY-VfWn~HEP~~G---~y---d-------F~G~~dL~~Fl~la~e~GL~ViLR~GPY 130 (635)
.+-+.+.+.|.-++++|+|+|-.- ++= ..+| -| | |.+..++.+|++.|+++||.|||-+=|-
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~----a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~N 92 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILA----ARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPN 92 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCcc----CCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccc
Confidence 355678899999999999999863 431 1122 11 2 4577899999999999999999986553
No 117
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=51.72 E-value=35 Score=44.71 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=46.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEc-eecCccCCcCC---ccc----------ccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTY-VFWNGHEPTQG---NYY----------FQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tY-VfWn~HEP~~G---~yd----------F~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
-+-+.|.+.|.-+|++|+|+|-.- +| +..+| -|| |.+..|+.+|++.|+++||.|||-+=|
T Consensus 755 ~tf~~~~~~l~Yl~~LGv~~i~lsPi~----~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~ 829 (1693)
T PRK14507 755 FTFADAEAILPYLAALGISHVYASPIL----KARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVP 829 (1693)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECCCc----CCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecc
Confidence 356779999999999999999863 43 22222 122 557889999999999999999998644
No 118
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=51.34 E-value=15 Score=32.26 Aligned_cols=37 Identities=24% Similarity=0.522 Sum_probs=29.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHH
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e 118 (635)
..+..|-..+|.+-. .||.|-.|||. +|.+||+++-|
T Consensus 19 ls~hhWLNflQaAyR--------------L~PgPS~~DF~---qLr~flk~alk 55 (92)
T PF02228_consen 19 LSTHHWLNFLQAAYR--------------LQPGPSSFDFH---QLRNFLKLALK 55 (92)
T ss_dssp STHHHHHHHHHHHHH--------------SS---STTTHH---HHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHh--------------cCCCCCcccHH---HHHHHHHHHHc
Confidence 456779998888874 68999999999 99999999987
No 119
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=50.53 E-value=37 Score=33.61 Aligned_cols=88 Identities=16% Similarity=0.275 Sum_probs=56.1
Q ss_pred EEEeeCCCCC-----cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccc--cC-hhhHHHHHHHHHHcCcEEEEecC
Q 006681 57 SGSIHYPRST-----PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF--QD-RYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 57 sG~iHY~R~~-----pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF--~G-~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
-|.+||+|.. .++.+..++.++..+++. ...|--.|..++.+.- +- ...+.+|++.++++|.++++-.+
T Consensus 55 ~G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~---~~i~lDiE~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~~iYt~ 131 (196)
T cd06416 55 TDVYFFPCINCCGSAAGQVQTFLQYLKANGIKY---GTVWIDIEQNPCQWSSDVASNCQFLQELVSAAKALGLKVGIYSS 131 (196)
T ss_pred cceEEEecCCCCCCHHHHHHHHHHHHHhCCCce---eEEEEEEecCCCCCcCCHHHHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 3999998743 566777888888765532 1224445544444321 11 14678999999999999999888
Q ss_pred ceeeee----c---CCCCCCcccccC
Q 006681 129 PYVCAE----W---NYGGFPVWLKYV 147 (635)
Q Consensus 129 PYIcAE----w---~~GG~P~WL~~~ 147 (635)
++--.. . +....|.|+...
T Consensus 132 ~~~w~~~~~~~~~~~~~~ypLWiA~Y 157 (196)
T cd06416 132 QYDWSQIFGSSYTCNFSSLPLWYAHY 157 (196)
T ss_pred cchhccccCCCcCCCcCCCceEecCC
Confidence 752111 1 145689999763
No 120
>PRK12677 xylose isomerase; Provisional
Probab=49.36 E-value=1.8e+02 Score=32.41 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=53.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCcCCccccc---ChhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCCCccc
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWL 144 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~---G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~P~WL 144 (635)
.+++.++++++.|+..|+.. .+..--|+.+ -...+.++.+++++.||.|. +-+.-|.+..+..|
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh------~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g------ 99 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFH------DDDLVPFGATDAERDRIIKRFKKALDETGLVVPMVTTNLFTHPVFKDG------ 99 (384)
T ss_pred CHHHHHHHHHHhCCCEEEec------ccccCCCCCChhhhHHHHHHHHHHHHHcCCeeEEEecCCCCCccccCC------
Confidence 47899999999999999873 1111112221 12358999999999999976 54432211112222
Q ss_pred ccCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 145 ~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
.+-+.|+..++...+.+.+-++.-+
T Consensus 100 ------~lts~d~~~R~~Ai~~~~r~IdlA~ 124 (384)
T PRK12677 100 ------AFTSNDRDVRRYALRKVLRNIDLAA 124 (384)
T ss_pred ------cCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2444566666665555555555554
No 121
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=48.90 E-value=45 Score=38.63 Aligned_cols=113 Identities=12% Similarity=0.068 Sum_probs=83.7
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCc---CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccc
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPT---QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLK 145 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~---~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~ 145 (635)
.++++++.||++|++.-+.-+-|...=|. .+..+-+|..--..+|+...++||...+-. -+=.+|.+|.
T Consensus 92 ~ykeDv~Lmk~lgv~afRFSIsWSRIlP~G~~~~gVN~~Gi~fY~~LI~eL~~nGI~P~VTL--------fHwDlPq~Le 163 (524)
T KOG0626|consen 92 RYKEDVKLMKELGVDAFRFSISWSRILPNGRLTGGVNEAGIQFYNNLIDELLANGIEPFVTL--------FHWDLPQALE 163 (524)
T ss_pred hhHHHHHHHHHcCCCeEEEEeehHhhCCCCCcCCCcCHHHHHHHHHHHHHHHHcCCeEEEEE--------ecCCCCHHHH
Confidence 57899999999999999999999987775 356788888888899999999999865542 1335898887
Q ss_pred c-CCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec
Q 006681 146 Y-VPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ 191 (635)
Q Consensus 146 ~-~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q 191 (635)
+ .-|-.-+..=+.|+++.+--+++..+++| ....=|...|..++
T Consensus 164 DeYgGwLn~~ivedF~~yA~~CF~~fGDrVK--~WiT~NEP~v~s~~ 208 (524)
T KOG0626|consen 164 DEYGGWLNPEIVEDFRDYADLCFQEFGDRVK--HWITFNEPNVFSIG 208 (524)
T ss_pred HHhccccCHHHHHHHHHHHHHHHHHhcccce--eeEEecccceeeee
Confidence 6 34433333345688888888888888888 33333444554444
No 122
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=47.77 E-value=4e+02 Score=28.98 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=38.7
Q ss_pred CCCCChHHHHHHHHHHHHhCCee-eeeecccCCCCCCCCCCCcccccCCCCCCcccCCCCCchhHHHHHHHHHHHHhhcc
Q 006681 277 VPTRPAEDLVFSVARFIQSGGSF-INYYMYHGGTNFGRTSGGFVATSYDYDAPIDEYGLLNEPKWGHLRDLHKAIKLCEP 355 (635)
Q Consensus 277 ~~~r~~ed~a~~v~~~l~~ggs~-~nyYM~hGGTNfG~~~g~~~~TSYDY~APIdE~G~~~~pKy~~lk~lh~~i~~~~~ 355 (635)
...++++++...+....++||++ +|. +.+.+|.+.++--..||++.+-|+..++
T Consensus 288 ~~~ks~~~li~~l~~~vs~ngnlLLNi-------------------------gP~~dG~ip~~~~~~L~e~G~Wl~~nge 342 (346)
T PF01120_consen 288 EKYKSADELIDILVDSVSRNGNLLLNI-------------------------GPDPDGTIPEEQVERLREIGDWLKVNGE 342 (346)
T ss_dssp CGS--HHHHHHHHHHHHTBTEEEEEEE----------------------------TTSS--HHHHHHHHHHHHHHHHHGG
T ss_pred CCcCCHHHHHHHHHHHhccCceEEEec-------------------------CCCCCCCcCHHHHHHHHHHHHHHHhccc
Confidence 34568899998888889999884 332 3446777777888899999999998776
Q ss_pred cc
Q 006681 356 AL 357 (635)
Q Consensus 356 ~L 357 (635)
++
T Consensus 343 aI 344 (346)
T PF01120_consen 343 AI 344 (346)
T ss_dssp GT
T ss_pred cc
Confidence 54
No 123
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=47.55 E-value=44 Score=34.90 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=41.2
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..+++|+.|++.|-+ .|..++--|.=+ +.++.+=++.|.++||.+|+++|
T Consensus 76 S~~mL~d~G~~~vii-----GHSERR~~f~Et-~~~i~~Kv~~a~~~gl~pIvCiG 125 (242)
T cd00311 76 SAEMLKDAGAKYVII-----GHSERRQYFGET-DEDVAKKVKAALEAGLTPILCVG 125 (242)
T ss_pred CHHHHHHcCCCEEEe-----CcccccCcCCCC-cHHHHHHHHHHHHCCCEEEEEeC
Confidence 355789999999988 777776665433 67888889999999999999998
No 124
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=47.11 E-value=38 Score=36.06 Aligned_cols=60 Identities=17% Similarity=0.184 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----cCccCC----------------cCCcccccChhhHHHHHHHHHHcCcEEE
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP----------------TQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVf----Wn~HEP----------------~~G~ydF~G~~dL~~Fl~la~e~GL~Vi 124 (635)
.+.+..++.|+.|-..++|+...++- |.+--+ ..|.|.- .|+.++++.|++.|+.||
T Consensus 13 ~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~---~di~elv~yA~~rgI~vi 89 (303)
T cd02742 13 LSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTY---AQLKDIIEYAAARGIEVI 89 (303)
T ss_pred cCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECH---HHHHHHHHHHHHcCCEEE
Confidence 47888999999999999999999877 754321 1223333 499999999999999999
Q ss_pred Eec
Q 006681 125 LRI 127 (635)
Q Consensus 125 LR~ 127 (635)
-.+
T Consensus 90 PEi 92 (303)
T cd02742 90 PEI 92 (303)
T ss_pred Eec
Confidence 664
No 125
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=46.66 E-value=1.1e+02 Score=27.33 Aligned_cols=76 Identities=25% Similarity=0.382 Sum_probs=46.5
Q ss_pred ccceeEEEeEEEeCCCcccccCCCCceEEEeec-cc-EEEEEEcC---eecccccchhhHhHhhccccccccccccccCC
Q 006681 477 ASDYLWYMTDVNIDSNEGFLKNGQDPLLTIWSA-GH-ALQVFING---QLSGKRSIMTDMIMFLGANIACQQLTFSFYPY 551 (635)
Q Consensus 477 ~sDYlWY~T~v~~~~~~~~~~~~~~~~L~v~s~-gh-~lhvFVNg---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (635)
.-||+=|.. |++...... .-.+++.+. +. .+.+.||| +.+++-+ | |.
T Consensus 30 ~G~~~~~~~-Vd~~~~g~y-----~~~~~~a~~~~~~~~~l~id~~~g~~~~~~~-------------------~---~~ 81 (125)
T PF03422_consen 30 NGDWIEYNN-VDVPEAGTY-----TLTIRYANGGGGGTIELRIDGPDGTLIGTVS-------------------L---PP 81 (125)
T ss_dssp TTTEEEEEE-EEESSSEEE-----EEEEEEEESSSSEEEEEEETTTTSEEEEEEE-------------------E---E-
T ss_pred CCCEEEEEE-EeeCCCceE-----EEEEEEECCCCCcEEEEEECCCCCcEEEEEE-------------------E---cC
Confidence 457776642 776654421 235677765 33 89999999 7763222 1 11
Q ss_pred ceeeeccCCCCceEEEeeeeecCceeEEEEEEee
Q 006681 552 AGTVYGSLENPKLTFSKNVKLRPGVNKISLLSTS 585 (635)
Q Consensus 552 ~g~~~g~~~~~~~~~~~~v~l~~G~n~islLs~t 585 (635)
-|.... --+.+.+|+|..|+|+|.|-+..
T Consensus 82 ----tg~w~~-~~~~~~~v~l~~G~h~i~l~~~~ 110 (125)
T PF03422_consen 82 ----TGGWDT-WQTVSVSVKLPAGKHTIYLVFNG 110 (125)
T ss_dssp ----ESSTTE-EEEEEEEEEEESEEEEEEEEESS
T ss_pred ----CCCccc-cEEEEEEEeeCCCeeEEEEEEEC
Confidence 121211 24667889999999999987765
No 126
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=46.16 E-value=31 Score=36.97 Aligned_cols=66 Identities=17% Similarity=0.218 Sum_probs=47.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCC--cccccChh--hHHHHHHHHHHcCcEEEEecCceee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQG--NYYFQDRY--DLVRFIKLVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G--~ydF~G~~--dL~~Fl~la~e~GL~ViLR~GPYIc 132 (635)
+.+.-.+.++++++.||-+=.+.+=|.... ..+ .|.|.-.+ |..+||+..+++|++|++.+=|+|+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~ 91 (319)
T cd06591 22 TQEELLDVAKEYRKRGIPLDVIVQDWFYWP-KQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFG 91 (319)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEechhhc-CCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcC
Confidence 556678899999999887644444444332 234 66665433 8999999999999999998877763
No 127
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=45.84 E-value=34 Score=36.97 Aligned_cols=68 Identities=6% Similarity=0.043 Sum_probs=50.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
+.++-++.++++++.||.+=.+.+=+.. ....+.|+|.-. -|..+|++..++.|++|++..=|+|+.+
T Consensus 22 ~~~ev~~~~~~~~~~~iP~d~i~lD~~~-~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~ 91 (339)
T cd06603 22 DQEDVKEVDAGFDEHDIPYDVIWLDIEH-TDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRD 91 (339)
T ss_pred CHHHHHHHHHHHHHcCCCceEEEEChHH-hCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 5566788999999999875554433221 234456666532 2889999999999999999999999854
No 128
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=45.74 E-value=53 Score=36.17 Aligned_cols=72 Identities=25% Similarity=0.301 Sum_probs=56.0
Q ss_pred EEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCc-ccccChhhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 56 ISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN-YYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 56 ~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~-ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
++=|+.+.|.+.+.=...|++|...|+..|-| ++|.|.+.. -.|. -+.+.++.|++.||+|++.+-|=|--|
T Consensus 4 ~GfSifp~~~~~~~~~~Yi~~~~~~Gf~~IFt----sl~~~~~~~~~~~~---~~~ell~~Anklg~~vivDvnPsil~~ 76 (360)
T COG3589 4 LGFSIFPNRSPKEKDIAYIDRMHKYGFKRIFT----SLLIPEEDAELYFH---RFKELLKEANKLGLRVIVDVNPSILKE 76 (360)
T ss_pred eeEEeccCCCcchhHHHHHHHHHHcCccceee----ecccCCchHHHHHH---HHHHHHHHHHhcCcEEEEEcCHHHHhh
Confidence 45567777888888889999999999977665 677777542 1233 577889999999999999998766555
No 129
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=44.99 E-value=2.6e+02 Score=31.47 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=63.5
Q ss_pred CcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccc----cC--ChhhHHHHHHHHHH
Q 006681 96 PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFR----TD--NGPFKAAMHKFTEK 169 (635)
Q Consensus 96 P~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~R----t~--n~~f~~~~~~~~~~ 169 (635)
+..|.|||+....=+.|++.|++.|...++-+ .=-.|.|++..-. ..- .+ -+...++-..|+..
T Consensus 93 ~~dg~yDW~~D~gQrwfL~~Ak~rGV~~f~aF---------SNSPP~~MT~NG~-~~g~~~~~~NLk~d~y~~FA~YLa~ 162 (384)
T PF14587_consen 93 PADGSYDWDADAGQRWFLKAAKERGVNIFEAF---------SNSPPWWMTKNGS-ASGGDDGSDNLKPDNYDAFADYLAD 162 (384)
T ss_dssp -TTS-B-TTSSHHHHHHHHHHHHTT---EEEE----------SSS-GGGSSSSS-SB-S-SSS-SS-TT-HHHHHHHHHH
T ss_pred CCCCCcCCCCCHHHHHHHHHHHHcCCCeEEEe---------ecCCCHHHhcCCC-CCCCCccccccChhHHHHHHHHHHH
Confidence 56799999988788889999999999977653 1247888876321 110 11 13445666777777
Q ss_pred HHHHhhhccccccCCCcEEEeccccccCCccccC-C--------CChHHHHHHHHHHHhhcCCccceEeec
Q 006681 170 IVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDI-G--------APGKAYAKWAAQMAVGLNTGVPWVMCK 231 (635)
Q Consensus 170 I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~-~--------~~~~~Y~~wl~~~a~~~g~~VPwi~c~ 231 (635)
++++++++.+ +|=-+=-=||.... +.. . +...+.++.|....++.|+..-+.+|.
T Consensus 163 Vv~~~~~~GI------~f~~IsP~NEP~~~-W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~~E 226 (384)
T PF14587_consen 163 VVKHYKKWGI------NFDYISPFNEPQWN-WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISACE 226 (384)
T ss_dssp HHHHHHCTT--------EEEEE--S-TTS--GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEEEE
T ss_pred HHHHHHhcCC------ccceeCCcCCCCCC-CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEecc
Confidence 7777764432 33333344887532 211 1 123557777887777788876655554
No 130
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=44.91 E-value=45 Score=36.48 Aligned_cols=107 Identities=21% Similarity=0.326 Sum_probs=62.6
Q ss_pred EEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHH
Q 006681 84 VIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAM 163 (635)
Q Consensus 84 ~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~ 163 (635)
.|++.|+|+++--+. -=...++.|+++|+.|+-- |.-||+ +-+.|+... ++. ++ +..
T Consensus 32 yvD~fvywsh~~~~i---------Pp~~~idaAHknGV~Vlgt----i~~e~~--~~~~~~~~l----L~~-~~---~~~ 88 (339)
T cd06547 32 YVDTFVYFSHSAVTI---------PPADWINAAHRNGVPVLGT----FIFEWT--GQVEWLEDF----LKK-DE---DGS 88 (339)
T ss_pred hhheeecccCccccC---------CCcHHHHHHHhcCCeEEEE----EEecCC--CchHHHHHH----hcc-Cc---ccc
Confidence 478888998754320 0024588999999999743 234665 345566531 221 11 224
Q ss_pred HHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCCChHHHHHHHHHHHhhc
Q 006681 164 HKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGL 221 (635)
Q Consensus 164 ~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~ 221 (635)
.++.++|+++++.+++ + | +.+-+|+..+... ..+.-.+|++.|++.+++.
T Consensus 89 ~~~a~kLv~lak~yGf---D-G--w~iN~E~~~~~~~--~~~~l~~F~~~L~~~~~~~ 138 (339)
T cd06547 89 FPVADKLVEVAKYYGF---D-G--WLINIETELGDAE--KAKRLIAFLRYLKAKLHEN 138 (339)
T ss_pred hHHHHHHHHHHHHhCC---C-c--eEeeeeccCCcHH--HHHHHHHHHHHHHHHHhhc
Confidence 6788889999986553 2 3 8888888873111 0112234566666666553
No 131
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=44.17 E-value=54 Score=34.42 Aligned_cols=50 Identities=22% Similarity=0.254 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..+++|++|++.|-+ .|..++-.|. +.+..+.+=++.|.++||.+|+++|
T Consensus 78 S~~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~K~~~a~~~gl~pIvCiG 127 (250)
T PRK00042 78 SAEMLKDLGVKYVII-----GHSERRQYFG-ETDELVNKKVKAALKAGLTPILCVG 127 (250)
T ss_pred CHHHHHHCCCCEEEe-----CcccccCccC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999988 7887776664 2244555556669999999999998
No 132
>PRK03705 glycogen debranching enzyme; Provisional
Probab=43.69 E-value=40 Score=40.16 Aligned_cols=55 Identities=24% Similarity=0.354 Sum_probs=36.9
Q ss_pred HHHHHHHCCCCEEEE-ceecCccCCcC---C-----ccc----------ccC-----hhhHHHHHHHHHHcCcEEEEec
Q 006681 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-----NYY----------FQD-----RYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~t-YVfWn~HEP~~---G-----~yd----------F~G-----~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.|.-+|++|+|+|+. +||=...++.. | -|| |.. ..++.++++.|+++||.|||..
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEE
Confidence 477899999999996 45422212110 1 011 222 2589999999999999999983
No 133
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=43.56 E-value=65 Score=27.32 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=19.5
Q ss_pred ecCCCceEEEEEecCCCceEEEE--------EC------CeeEEeCCceEEEc
Q 006681 377 NSKSGKCAAFLANYDTTFSAKVS--------FG------NAQYDLPPWSISVL 415 (635)
Q Consensus 377 ~~~~~~~~~Fl~N~~~~~~~~V~--------f~------~~~y~lp~~SvsIl 415 (635)
+..++.....+.|+.+. .++|. +. +....|||||+.|+
T Consensus 38 r~~~~~~l~v~~Nls~~-~~~~~~~~~~~~l~~s~~~~~~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 38 RTGGGERLLVAFNLSDE-PVTVPEGPWGEVLFSSEPARAGGAGTLPPWSVVVL 89 (89)
T ss_dssp EEETTEEEEEEEE-SSS--EEEETSCCEEEEEECSCSSE--EEEE-TTEEEEE
T ss_pred EEcCCceEEEEEecCCC-cEEccCCCCCeEEEcCCCcccccCceECCCEEEEC
Confidence 33455677888887653 23333 21 11567777777654
No 134
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=43.51 E-value=38 Score=36.74 Aligned_cols=74 Identities=11% Similarity=0.181 Sum_probs=53.7
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh--hhH--HHHHHHHHHcCcEEEEecCceee
Q 006681 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDL--VRFIKLVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 60 iHY~R~---~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~--~dL--~~Fl~la~e~GL~ViLR~GPYIc 132 (635)
+|.+|. +.+..++.++++++.||.+=.+.+=+..++ ..+.|.|... -|. .++++..++.|++|++.+=|+|+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~-~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~ 91 (339)
T cd06602 13 FHLCRWGYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMD-RRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAIS 91 (339)
T ss_pred hHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECccccc-CccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccc
Confidence 455552 567788999999999987655444333332 2466666653 377 99999999999999999999987
Q ss_pred ee
Q 006681 133 AE 134 (635)
Q Consensus 133 AE 134 (635)
-+
T Consensus 92 ~~ 93 (339)
T cd06602 92 AN 93 (339)
T ss_pred cC
Confidence 53
No 135
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.40 E-value=47 Score=35.65 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=46.1
Q ss_pred cccHHHHHHHHHHCCCCEEEEceecCccCC---cCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceee
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP---~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIc 132 (635)
.+.-.+.++++++.||-+=.+.+=+....- ....|+|.-. -|..++++..+++|++|++.+=|+|+
T Consensus 28 q~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~ 98 (317)
T cd06599 28 QEALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLL 98 (317)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence 346678899999999876554443222211 1234555422 38999999999999999999988875
No 136
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=42.77 E-value=40 Score=36.11 Aligned_cols=68 Identities=16% Similarity=0.250 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--cCccCC---cCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGHEP---TQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVf--Wn~HEP---~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
+.+...+.++++|+.||-+=.+.+= |-.-.. .-|.|+|.-. -|..++++..+++|++|++.+=|+|+.
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~ 96 (317)
T cd06598 22 NWQEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLK 96 (317)
T ss_pred CHHHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccC
Confidence 4566789999999999865444443 432111 2345655432 389999999999999999998888753
No 137
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=42.76 E-value=48 Score=40.90 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 006681 107 YDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 107 ~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.++.++++.|+++||.|||-.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV 424 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV 424 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 479999999999999999874
No 138
>PRK15492 triosephosphate isomerase; Provisional
Probab=42.10 E-value=60 Score=34.34 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
....+|++|++.|-+ .|..++-.|. +-+..+.+=++.|.++||.+|+++|
T Consensus 86 Sa~mLkd~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~a~~~gl~pIvCiG 135 (260)
T PRK15492 86 SPLMLKEIGTQLVMI-----GHSERRHKFG-ETDQEENAKVLAALKHDFTTLLCVG 135 (260)
T ss_pred CHHHHHHcCCCEEEE-----CccccccccC-cchHHHHHHHHHHHHCCCEEEEEcC
Confidence 456799999999988 7887777664 3456677789999999999999998
No 139
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=42.00 E-value=1.4e+02 Score=31.98 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEce----ecCcc-CCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYV----FWNGH-EPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYV----fWn~H-EP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
+.+.-.+.|+.|...|+|++..|+ .+..+ |-. +|.|. ..|+.++++.|++.|+.||-.+--.-|.|
T Consensus 15 ~~~~lk~~id~ma~~k~N~l~lhl~D~f~~~~~p~~~~~~~~yT---~~ei~ei~~yA~~~gI~vIPeid~pGH~~ 87 (301)
T cd06565 15 KVSYLKKLLRLLALLGANGLLLYYEDTFPYEGEPEVGRMRGAYT---KEEIREIDDYAAELGIEVIPLIQTLGHLE 87 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEEecceecCCCcccccCCCCcC---HHHHHHHHHHHHHcCCEEEecCCCHHHHH
Confidence 457789999999999999999875 23322 111 34443 34999999999999999996653333433
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=41.88 E-value=36 Score=35.06 Aligned_cols=79 Identities=20% Similarity=0.181 Sum_probs=56.9
Q ss_pred EeEEEEEEeeCCC-CCcccHHHHHHHHHHCCCCEEEEceecCccCC-----------cCCcccccChhhHHHHHHHHHHc
Q 006681 52 KRILISGSIHYPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-----------TQGNYYFQDRYDLVRFIKLVQQA 119 (635)
Q Consensus 52 r~~l~sG~iHY~R-~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-----------~~G~ydF~G~~dL~~Fl~la~e~ 119 (635)
-+.+..|+-+..| ++.+.|.+.++++++.|+..|-+ -.-.|. .+...++.|..+|..++.+.+..
T Consensus 123 ~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~---g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~ 199 (279)
T cd03789 123 VVVLPPGASGPAKRWPAERFAALADRLLARGARVVLT---GGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARA 199 (279)
T ss_pred EEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEE---echhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhC
Confidence 3444455555555 89999999999999888776643 222221 23557888988999999999999
Q ss_pred CcEEEEecCceeee
Q 006681 120 GLYVHLRIGPYVCA 133 (635)
Q Consensus 120 GL~ViLR~GPYIcA 133 (635)
.+.+-...||.--|
T Consensus 200 ~l~I~~Dsg~~HlA 213 (279)
T cd03789 200 DLVVTNDSGPMHLA 213 (279)
T ss_pred CEEEeeCCHHHHHH
Confidence 99998888875333
No 141
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=41.70 E-value=77 Score=34.41 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=52.8
Q ss_pred cceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcee----cCccCCc------CCccc--------cc
Q 006681 43 HKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYY--------FQ 104 (635)
Q Consensus 43 ~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVf----Wn~HEP~------~G~yd--------F~ 104 (635)
.|.|+||=-| || .+.+...+.|+.|-..++|+...++- |.+.-+. .|.+. |=
T Consensus 3 ~RG~mlD~aR--------~f--~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~Y 72 (329)
T cd06568 3 YRGLMLDVAR--------HF--FTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYY 72 (329)
T ss_pred ccceeeeccC--------CC--cCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcC
Confidence 4566666544 32 38899999999999999999998873 5433221 22221 00
Q ss_pred ChhhHHHHHHHHHHcCcEEEEec
Q 006681 105 DRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 105 G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
-..|+.++++.|++.|+.||-.+
T Consensus 73 T~~di~elv~yA~~rgI~vIPEi 95 (329)
T cd06568 73 TQEDYKDIVAYAAERHITVVPEI 95 (329)
T ss_pred CHHHHHHHHHHHHHcCCEEEEec
Confidence 13599999999999999999664
No 142
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=41.46 E-value=68 Score=35.63 Aligned_cols=70 Identities=14% Similarity=0.296 Sum_probs=47.3
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeeeecC
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAEWN 136 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~ 136 (635)
+.+...+.++.+++.|+-.=...+-..... ..+.|.|... -|..++++.+++.|+++++..-|+|+-+-+
T Consensus 41 ~~~~v~~~i~~~~~~~iP~d~~~iD~~~~~-~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~ 112 (441)
T PF01055_consen 41 NQDEVREVIDRYRSNGIPLDVIWIDDDYQD-GYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSP 112 (441)
T ss_dssp SHHHHHHHHHHHHHTT--EEEEEE-GGGSB-TTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTT
T ss_pred CHHHHHHHHHHHHHcCCCccceeccccccc-cccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCC
Confidence 466778999999999987655544323222 4445555432 289999999999999999999999976654
No 143
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=41.27 E-value=18 Score=36.30 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=51.6
Q ss_pred EEeEEEEEEeeCC-CCCcccHHHHHHHHHHCCCCEEEEceecCccC--------CcCC----cccccChhhHHHHHHHHH
Q 006681 51 QKRILISGSIHYP-RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE--------PTQG----NYYFQDRYDLVRFIKLVQ 117 (635)
Q Consensus 51 kr~~l~sG~iHY~-R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HE--------P~~G----~ydF~G~~dL~~Fl~la~ 117 (635)
.-+.+.-|.-+.. |+|.+.|.+.++++++-| ..+.++|.-.| -.++ ..++.|..+|..++.+++
T Consensus 106 ~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~---~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~ 182 (247)
T PF01075_consen 106 PYIGINPGASWPSKRWPAEKWAELIERLKERG---YRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALIS 182 (247)
T ss_dssp SEEEEE---SSGGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHH
T ss_pred CeEEEeecCCCccccCCHHHHHHHHHHHHhhC---ceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHh
Confidence 3344444554543 489999999999999998 55668887766 1223 578889999999999999
Q ss_pred HcCcEEEEecCc
Q 006681 118 QAGLYVHLRIGP 129 (635)
Q Consensus 118 e~GL~ViLR~GP 129 (635)
...+.|-...||
T Consensus 183 ~a~~~I~~Dtg~ 194 (247)
T PF01075_consen 183 RADLVIGNDTGP 194 (247)
T ss_dssp TSSEEEEESSHH
T ss_pred cCCEEEecCChH
Confidence 999988888776
No 144
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=40.96 E-value=55 Score=41.35 Aligned_cols=21 Identities=19% Similarity=0.377 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 006681 107 YDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 107 ~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+|.++|+.|+++||.|||-.
T Consensus 555 ~EfK~LV~alH~~GI~VILDV 575 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDV 575 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 689999999999999999984
No 145
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=40.92 E-value=24 Score=28.37 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=19.4
Q ss_pred cCCCceEEEEEecCCCceEEEEEC--------C----eeEEeCCceEEEc
Q 006681 378 SKSGKCAAFLANYDTTFSAKVSFG--------N----AQYDLPPWSISVL 415 (635)
Q Consensus 378 ~~~~~~~~Fl~N~~~~~~~~V~f~--------~----~~y~lp~~SvsIl 415 (635)
.+++..+.|+-|+.++. .+|++. + ..++||||.|.||
T Consensus 8 ~~~~~~y~F~~N~s~~~-~~v~l~~~~~dll~g~~~~~~~~L~p~~v~Vl 56 (58)
T PF08533_consen 8 ENDGGRYLFLLNFSDEP-QTVTLPESYTDLLTGETVSGGLTLPPYGVRVL 56 (58)
T ss_dssp ---ETTEEEEEE-SSS--EE----TT-EEEES-------SEE-TTEEEEE
T ss_pred EcCCCEEEEEEECCCCC-EEEEcCCCceecccCcceeeEEEECCCEEEEE
Confidence 44566789999987543 344442 1 2378999999987
No 146
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=40.74 E-value=42 Score=36.79 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=45.2
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 60 iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
-++ |.+...=....+.+|++|-++|.+.|+|.-.++. +-+-.-..+|.++.+.|++.||.+++-+
T Consensus 99 ~~g-r~~~~~~~~sve~a~~~GAdAVk~lv~~~~d~~~--~~~~~~~~~l~rv~~ec~~~giPlllE~ 163 (340)
T PRK12858 99 APG-RLPDLLDNWSVRRIKEAGADAVKLLLYYRPDEDD--AINDRKHAFVERVGAECRANDIPFFLEP 163 (340)
T ss_pred CCC-CCccccccccHHHHHHcCCCEEEEEEEeCCCcch--HHHHHHHHHHHHHHHHHHHcCCceEEEE
Confidence 344 5443333334678999999999999999955331 0011123479999999999999998864
No 147
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=40.50 E-value=64 Score=36.72 Aligned_cols=56 Identities=21% Similarity=0.370 Sum_probs=45.7
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 60 iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.-|.|.|.+.-++.++++.+.|++.|+++..-|.. +++...++.|+++|+.|.+.+
T Consensus 88 ~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~------------~n~~~~v~~ak~~G~~v~~~i 143 (448)
T PRK12331 88 LGYRNYADDVVESFVQKSVENGIDIIRIFDALNDV------------RNLETAVKATKKAGGHAQVAI 143 (448)
T ss_pred cccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 34666777778889999999999999999886643 258889999999999886653
No 148
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=40.37 E-value=74 Score=32.11 Aligned_cols=65 Identities=26% Similarity=0.351 Sum_probs=42.7
Q ss_pred EEEEeeCCCCCccc--HHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHc-CcEEE-EecCc
Q 006681 56 ISGSIHYPRSTPEM--WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQA-GLYVH-LRIGP 129 (635)
Q Consensus 56 ~sG~iHY~R~~pe~--W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~-GL~Vi-LR~GP 129 (635)
+=++.|.+..+|+. |.+.+++|++.|.++|..-+.=+ +.+....|.+|++.+++. +..+| +..|+
T Consensus 116 iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia~~~~---------~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~ 184 (224)
T PF01487_consen 116 IILSYHDFEKTPSWEELIELLEEMQELGADIVKIAVMAN---------SPEDVLRLLRFTKEFREEPDIPVIAISMGE 184 (224)
T ss_dssp EEEEEEESS---THHHHHHHHHHHHHTT-SEEEEEEE-S---------SHHHHHHHHHHHHHHHHHTSSEEEEEEETG
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEEeccC---------CHHHHHHHHHHHHHHhhccCCcEEEEEcCC
Confidence 45789977766655 88999999999999998755422 334445677777777765 67765 66654
No 149
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=40.03 E-value=39 Score=41.64 Aligned_cols=82 Identities=18% Similarity=0.364 Sum_probs=54.0
Q ss_pred CcccHHHHHHHHHHCCCCEEE------------EceecCccCC------cCCcccccChhhHHHHHHHHHH-cCcEEEEe
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQ------------TYVFWNGHEP------TQGNYYFQDRYDLVRFIKLVQQ-AGLYVHLR 126 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~------------tYVfWn~HEP------~~G~ydF~G~~dL~~Fl~la~e-~GL~ViLR 126 (635)
|-+.|+.+|+++|+.|.|+|. .|-.-+.||- .-++|.|+ |+...++-|++ -++..|-.
T Consensus 140 pl~eWeprL~va~e~gYNmIHfTPlqelG~S~S~YSl~dql~~~~~~~~~~~k~s~e---DV~~lV~~l~rewnvlsi~D 216 (1521)
T KOG3625|consen 140 PLDEWEPRLRVAKESGYNMIHFTPLQELGLSRSCYSLADQLELNPDFSRPNRKYSFE---DVGQLVEKLKREWNVLSITD 216 (1521)
T ss_pred ChhhhhHHHHHHHHcCCceEeeeeHHHhccCCCccchHhhhhcChhhhccCCCCCHH---HHHHHHHHHHhhcCeeeeeh
Confidence 668999999999999999997 2333333332 23678888 89999888865 45554433
Q ss_pred cCceeeeecCCCC-CCcccccCCCcccccCC
Q 006681 127 IGPYVCAEWNYGG-FPVWLKYVPGIEFRTDN 156 (635)
Q Consensus 127 ~GPYIcAEw~~GG-~P~WL~~~p~i~~Rt~n 156 (635)
+ =||.-. =-.||.+.|+...-.-+
T Consensus 217 v------V~NHtAnns~WlleHPea~Yn~~~ 241 (1521)
T KOG3625|consen 217 V------VYNHTANNSKWLLEHPEAAYNCVN 241 (1521)
T ss_pred h------hhhccccCCchhHhCchhhhcccC
Confidence 2 133222 35799998875443333
No 150
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=40.00 E-value=44 Score=34.25 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcC----CcccccChhhHHHHHHHHHHcCcEEEEec-Cce
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ----GNYYFQDRYDLVRFIKLVQQAGLYVHLRI-GPY 130 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~----G~ydF~G~~dL~~Fl~la~e~GL~ViLR~-GPY 130 (635)
+.+++.|+.+++.|..+|.+ |..+.... -.+... ...|.++.++|+++|+.+.+.+ +|+
T Consensus 90 ~~~~~~i~~a~~lGa~~i~~---~~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~iE~~~~~ 153 (275)
T PRK09856 90 DMIKLAMDMAKEMNAGYTLI---SAAHAGYLTPPNVIWGRL-AENLSELCEYAENIGMDLILEPLTPY 153 (275)
T ss_pred HHHHHHHHHHHHhCCCEEEE---cCCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHcCCEEEEecCCCC
Confidence 35567789999999999855 33332211 112211 1368899999999999998886 443
No 151
>PRK14567 triosephosphate isomerase; Provisional
Probab=39.95 E-value=68 Score=33.85 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=40.1
Q ss_pred HHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 74 l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..++|+.|++.|-+ .|..++--|. +-+..+.+=++.|.++||.+|+++|
T Consensus 78 ~~mLkd~G~~yvii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pI~CiG 126 (253)
T PRK14567 78 ARMLEDIGCDYLLI-----GHSERRSLFA-ESDEDVFKKLNKIIDTTITPVVCIG 126 (253)
T ss_pred HHHHHHcCCCEEEE-----CcccccCccC-CCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 45789999999988 7877776654 4456677889999999999999998
No 152
>PRK09267 flavodoxin FldA; Validated
Probab=39.90 E-value=2.3e+02 Score=27.04 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=49.2
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE
Q 006681 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 48 idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi 124 (635)
+..-..++++...|+...+|..|.+.+++++...++-..+.+|= ......-.-.| ..-+..+-+++++.|..++
T Consensus 44 l~~~d~vi~g~pt~~~G~~~~~~~~fl~~~~~~~l~~k~vaifg-~g~~~~~~~~~--~~~~~~l~~~l~~~g~~~v 117 (169)
T PRK09267 44 FEAYDLLILGIPTWGYGELQCDWDDFLPELEEIDFSGKKVALFG-LGDQEDYAEYF--CDAMGTLYDIVEPRGATIV 117 (169)
T ss_pred HhhCCEEEEEecCcCCCCCCHHHHHHHHHHhcCCCCCCEEEEEe-cCCCCcchHHH--HHHHHHHHHHHHHCCCEEE
Confidence 34556688999999878788999999998887777777777773 21111000112 2346677788889897654
No 153
>PRK09989 hypothetical protein; Provisional
Probab=39.12 E-value=57 Score=33.40 Aligned_cols=43 Identities=19% Similarity=0.364 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEE
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViL 125 (635)
-.++.|++++++|++.|+...+|. .+..+..++++++||.+..
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~~~~--------------~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLFPYD--------------YSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECCccc--------------CCHHHHHHHHHHcCCcEEE
Confidence 478999999999999999843332 2367788889999999874
No 154
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=39.04 E-value=50 Score=35.47 Aligned_cols=67 Identities=4% Similarity=0.061 Sum_probs=48.4
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
+.+..++.++++++.++-+=.+.+=+... ...+.|+|+-. -|..+|++..+++|++|++.+=|+|..
T Consensus 22 ~~~~v~~~~~~~~~~~iP~d~i~lD~~~~-~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~ 90 (317)
T cd06600 22 PQDKVVEVVDIMQKEGFPYDVVFLDIHYM-DSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRV 90 (317)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEChhhh-CCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccC
Confidence 56677899999999998654443332222 23456666533 389999999999999999998888863
No 155
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=38.95 E-value=1.1e+02 Score=26.28 Aligned_cols=22 Identities=14% Similarity=0.169 Sum_probs=15.7
Q ss_pred CceEEEeecccEEEEEEcCeec
Q 006681 501 DPLLTIWSAGHALQVFINGQLS 522 (635)
Q Consensus 501 ~~~L~v~s~gh~lhvFVNg~~~ 522 (635)
.-.|++....--++-||||+++
T Consensus 33 ~l~l~a~~~~~~~~W~vdg~~~ 54 (89)
T PF06832_consen 33 PLVLKAAGGRGPVYWFVDGEPL 54 (89)
T ss_pred eEEEEEeCCCCcEEEEECCEEc
Confidence 3345555442399999999999
No 156
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=38.94 E-value=62 Score=35.19 Aligned_cols=73 Identities=14% Similarity=0.187 Sum_probs=50.0
Q ss_pred eeCCCC---CcccHHHHHHHHHHCCCCEEEEce----------ecCccCC---------cCCcccccCh---hhHHHHHH
Q 006681 60 IHYPRS---TPEMWPDLIQKAKDGGLDVIQTYV----------FWNGHEP---------TQGNYYFQDR---YDLVRFIK 114 (635)
Q Consensus 60 iHY~R~---~pe~W~d~l~k~Ka~GlN~I~tYV----------fWn~HEP---------~~G~ydF~G~---~dL~~Fl~ 114 (635)
+|..|. +.+.-++.++++++.||-+=-+++ .|+...- .-+.++|... -|..+||+
T Consensus 13 ~~~sr~~Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~ 92 (340)
T cd06597 13 LWMSANEWDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMID 92 (340)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHH
Confidence 455562 456678899999999987544433 3443221 1234444321 28999999
Q ss_pred HHHHcCcEEEEecCceee
Q 006681 115 LVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 115 la~e~GL~ViLR~GPYIc 132 (635)
..++.|++|+|.+=|+|.
T Consensus 93 ~Lh~~G~kv~l~v~P~i~ 110 (340)
T cd06597 93 ELHEQGVKVLLWQIPIIK 110 (340)
T ss_pred HHHHCCCEEEEEecCccc
Confidence 999999999999988885
No 157
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=38.52 E-value=69 Score=32.70 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=37.0
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
...++|++|++.+-+ .|..++ |.-+ |+.+=++.|.++||.+|+++
T Consensus 73 S~~mLkd~G~~~vii-----GHSERR--f~Et---di~~Kv~~a~~~gl~~IvCi 117 (205)
T TIGR00419 73 SAEMLKDIGAKGTLI-----NHSERR--MKLA---DIEKKIARLKELGLTSVVCT 117 (205)
T ss_pred CHHHHHHcCCCEEEE-----CcccCC--CCcc---HHHHHHHHHHHCCCEEEEEE
Confidence 356789999998888 677776 5444 68899999999999999997
No 158
>PTZ00333 triosephosphate isomerase; Provisional
Probab=38.46 E-value=73 Score=33.55 Aligned_cols=49 Identities=24% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 74 l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
-+.+|++|++.|-+ .|..++.-|. +.+.++.+=++.|.++||.+|+++|
T Consensus 82 ~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~I~~Kv~~al~~gl~pIlCvG 130 (255)
T PTZ00333 82 AEMLKDLGINWTIL-----GHSERRQYFG-ETNEIVAQKVKNALENGLKVILCIG 130 (255)
T ss_pred HHHHHHcCCCEEEE-----CcccccCcCC-CCcHHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999999988 7877776663 4467888889999999999999998
No 159
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=38.24 E-value=56 Score=34.06 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=35.1
Q ss_pred HHHHHHHHHCCCCEEEEceecC--ccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWN--GHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn--~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
++.++++|++|++.|...+=-+ .++...+..+|+ +..+.++.++++|+.|...
T Consensus 123 ~e~l~~Lk~aG~~~v~i~~E~~~~~~~~i~~~~s~~---~~~~ai~~l~~~Gi~v~~~ 177 (296)
T TIGR00433 123 PEQAKRLKDAGLDYYNHNLDTSQEFYSNIISTHTYD---DRVDTLENAKKAGLKVCSG 177 (296)
T ss_pred HHHHHHHHHcCCCEEEEcccCCHHHHhhccCCCCHH---HHHHHHHHHHHcCCEEEEe
Confidence 6788999999999988764410 111112223444 6677899999999986533
No 160
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=38.06 E-value=58 Score=34.94 Aligned_cols=73 Identities=11% Similarity=0.192 Sum_probs=50.8
Q ss_pred EEEEEEeeC-CCCCcccHHHHHHHHHHCCCCEEEEceecCccCC-------------cCCcccccChhhHHHHHHHHHHc
Q 006681 54 ILISGSIHY-PRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP-------------TQGNYYFQDRYDLVRFIKLVQQA 119 (635)
Q Consensus 54 ~l~sG~iHY-~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP-------------~~G~ydF~G~~dL~~Fl~la~e~ 119 (635)
.+.-|+-+. -|+|+|.|.+.++.+++.|+.+| +++.-.|. .+...|..|..+|..+..+.+..
T Consensus 187 ~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vv---l~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a 263 (352)
T PRK10422 187 VIQPTARQIFKCWDNDKFSAVIDALQARGYEVV---LTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDHA 263 (352)
T ss_pred EEecCCCccccCCCHHHHHHHHHHHHHCCCeEE---EEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHhC
Confidence 334344333 34899999999999988887544 55553331 12356778888888898888888
Q ss_pred CcEEEEecCc
Q 006681 120 GLYVHLRIGP 129 (635)
Q Consensus 120 GL~ViLR~GP 129 (635)
.++|--..||
T Consensus 264 ~l~v~nDSGp 273 (352)
T PRK10422 264 QLFIGVDSAP 273 (352)
T ss_pred CEEEecCCHH
Confidence 8887777665
No 161
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=37.86 E-value=77 Score=33.95 Aligned_cols=89 Identities=18% Similarity=0.278 Sum_probs=56.1
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCc--EEEEecCceee-------eecCCCCCCcc
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGL--YVHLRIGPYVC-------AEWNYGGFPVW 143 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL--~ViLR~GPYIc-------AEw~~GG~P~W 143 (635)
.|++-.++|.+.+-|=.| ||.+ .+.+|++.|++.|+ .|+..+-|-.. ++...-.+|.|
T Consensus 168 ~Lk~K~~aGA~~~iTQ~~----------Fd~~---~~~~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~ 234 (296)
T PRK09432 168 NLKRKVDAGANRAITQFF----------FDVE---SYLRFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAW 234 (296)
T ss_pred HHHHHHHcCCCeeecccc----------cchH---HHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHH
Confidence 355555678887777333 3444 78999999999994 45555555321 57777789999
Q ss_pred cccCCCcccccCC-hhhHHHHHHHHHHHHHHhhh
Q 006681 144 LKYVPGIEFRTDN-GPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 144 L~~~p~i~~Rt~n-~~f~~~~~~~~~~I~~~ik~ 176 (635)
+.+.=. .. .++ +..+++--++..++++.+.+
T Consensus 235 l~~~l~-~~-~d~~~~~~~~Gi~~a~e~i~~L~~ 266 (296)
T PRK09432 235 MAKMFD-GL-DDDAETRKLVGASIAMDMVKILSR 266 (296)
T ss_pred HHHHHH-hc-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 976310 01 133 33555556677777777663
No 162
>PRK09875 putative hydrolase; Provisional
Probab=37.80 E-value=1.6e+02 Score=31.54 Aligned_cols=89 Identities=13% Similarity=0.134 Sum_probs=56.8
Q ss_pred eEEEccceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHH
Q 006681 38 SVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ 117 (635)
Q Consensus 38 ~Vt~d~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~ 117 (635)
.+|+-+-.++++..+ +.+......-..+.=...|+.+|+.|.++|= |..+- .-.||.....++++
T Consensus 7 G~tl~HEHl~~~~~~---~~~~~~~~l~~~~~~~~el~~~~~~Gg~tiV--------d~T~~----g~GRd~~~l~~is~ 71 (292)
T PRK09875 7 GYTLAHEHLHIDLSG---FKNNVDCRLDQYAFICQEMNDLMTRGVRNVI--------EMTNR----YMGRNAQFMLDVMR 71 (292)
T ss_pred CcceecCCeEecChh---hcCCcccccccHHHHHHHHHHHHHhCCCeEE--------ecCCC----ccCcCHHHHHHHHH
Confidence 456666677766532 1111111112233345578889999998873 22221 12479999999999
Q ss_pred HcCcEEEEecCceeeeecCCCCCCccccc
Q 006681 118 QAGLYVHLRIGPYVCAEWNYGGFPVWLKY 146 (635)
Q Consensus 118 e~GL~ViLR~GPYIcAEw~~GG~P~WL~~ 146 (635)
+-|+.+|.-.|-|.... +|.|+..
T Consensus 72 ~tgv~Iv~~TG~y~~~~-----~p~~~~~ 95 (292)
T PRK09875 72 ETGINVVACTGYYQDAF-----FPEHVAT 95 (292)
T ss_pred HhCCcEEEcCcCCCCcc-----CCHHHhc
Confidence 99999999999885333 6888874
No 163
>PRK14566 triosephosphate isomerase; Provisional
Probab=37.64 E-value=79 Score=33.53 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=40.2
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..+++|+.|++.|-+ .|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 87 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 136 (260)
T PRK14566 87 SGQMLKDAGCRYVII-----GHSERRRMYG-ETSNIVAEKFAAAQKHGLTPILCVG 136 (260)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCCCC-cCHHHHHHHHHHHHHCCCEEEEEcC
Confidence 345799999999888 7777776654 3356677789999999999999987
No 164
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=37.03 E-value=81 Score=35.02 Aligned_cols=66 Identities=21% Similarity=0.287 Sum_probs=45.8
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee--cCccCCcCCcccccChhhHHHHHHHHHHcCcEE-EEecCceeeeecCCCCCC
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVF--WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGFP 141 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVf--Wn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V-iLR~GPYIcAEw~~GG~P 141 (635)
.+++.+++.++.+|+.|++.+=+.++ .+...+.. |.= .-.+..+.++++.+.|+.+ +|-+| ||||
T Consensus 147 i~~~~~~~~l~~~~~~~l~~~Gih~HiGS~~~~~~~--~~~-a~~~~~~~~~~~~~~g~~l~~ldiG---------GGf~ 214 (394)
T cd06831 147 TTLKNCRHLLECAKELDVQIVGVKFHVSSSCKEYQT--YVH-ALSDARCVFDMAEEFGFKMNMLDIG---------GGFT 214 (394)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEEECCCCCCCHHH--HHH-HHHHHHHHHHHHHHCCCCCCEEEeC---------CCcC
Confidence 67888999999999999998777665 44433332 210 0124466788888888764 57876 8897
Q ss_pred c
Q 006681 142 V 142 (635)
Q Consensus 142 ~ 142 (635)
.
T Consensus 215 ~ 215 (394)
T cd06831 215 G 215 (394)
T ss_pred C
Confidence 3
No 165
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=37.00 E-value=1.9e+02 Score=29.60 Aligned_cols=91 Identities=8% Similarity=0.066 Sum_probs=65.0
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCccccc-ChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ-DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~-G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL 144 (635)
.+..+++.++.++++|+.++.+|..... ....+..+ |..|-..-+++|++.|+. + |-|.++
T Consensus 50 ~k~lt~~e~~~i~~~Gl~~~pIyq~~~~---~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gs~IYf 111 (212)
T cd06418 50 SKNLTATELETITAAGLKVFPIYQGGGY---SLDYFGYEQGVKDARDAVAAARALGFP----P-----------GTIIYF 111 (212)
T ss_pred CCCCCHHHHHHHHHCCCEEEEEEECCCc---cccccCHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 6789999999999999999999988765 22223333 778999999999999872 1 233344
Q ss_pred ccCCCcccccCChhhHHHHHHHHHHHHHHhhhcc
Q 006681 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEK 178 (635)
Q Consensus 145 ~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~ 178 (635)
--+.+. .+..+...+..|++.+.+.|+...
T Consensus 112 avD~d~----~~~~~~~~v~~Y~~a~~~~l~~~g 141 (212)
T cd06418 112 AVDFDA----LDDEVTEVILPYFRGWNDALHEAG 141 (212)
T ss_pred EeecCC----CcchhHHHHHHHHHHHHHHHHhcC
Confidence 322221 223377888899999999888543
No 166
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=36.99 E-value=97 Score=25.04 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEE
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViL 125 (635)
...++.++++|+.|++.|.+= -|. ++. ...+|.+++++.|+.++.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iT----Dh~------~~~---~~~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAIT----DHG------NLF---GAVEFYKAAKKAGIKPII 59 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEe----eCC------ccc---CHHHHHHHHHHcCCeEEE
Confidence 346789999999999998762 121 233 356888999999988764
No 167
>PLN03059 beta-galactosidase; Provisional
Probab=36.66 E-value=43 Score=40.90 Aligned_cols=87 Identities=26% Similarity=0.389 Sum_probs=48.4
Q ss_pred eeEEEeEEEeCCCcccccCCCC-ceEEEeecccEEEEEEcCeecccccchhhHhHhhccccccccccccccCCceeeecc
Q 006681 480 YLWYMTDVNIDSNEGFLKNGQD-PLLTIWSAGHALQVFINGQLSGKRSIMTDMIMFLGANIACQQLTFSFYPYAGTVYGS 558 (635)
Q Consensus 480 YlWY~T~v~~~~~~~~~~~~~~-~~L~v~s~gh~lhvFVNg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 558 (635)
--||.+.|++++. .+ ..|.+.++|-- +|||||+.+|--=. ++..+-.|..-. |.|.-..+
T Consensus 620 ~twYK~~Fd~p~g-------~Dpv~LDm~gmGKG-~aWVNG~nIGRYW~------~~a~~~gC~~c~-----y~g~~~~~ 680 (840)
T PLN03059 620 LTWYKTTFDAPGG-------NDPLALDMSSMGKG-QIWINGQSIGRHWP------AYTAHGSCNGCN-----YAGTFDDK 680 (840)
T ss_pred ceEEEEEEeCCCC-------CCCEEEecccCCCe-eEEECCcccccccc------cccccCCCcccc-----ccccccch
Confidence 5699999997532 34 57788887554 58999999954310 011122232211 21211111
Q ss_pred C-----CCCceEEE-ee-eeecCceeEEEEEEee
Q 006681 559 L-----ENPKLTFS-KN-VKLRPGVNKISLLSTS 585 (635)
Q Consensus 559 ~-----~~~~~~~~-~~-v~l~~G~n~islLs~t 585 (635)
. +.|+.++= .| .-|++|.|.|.|+=..
T Consensus 681 kc~~~cggP~q~lYHVPr~~Lk~g~N~lViFEe~ 714 (840)
T PLN03059 681 KCRTNCGEPSQRWYHVPRSWLKPSGNLLIVFEEW 714 (840)
T ss_pred hhhccCCCceeEEEeCcHHHhccCCceEEEEEec
Confidence 1 14444443 44 2489999999888654
No 168
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=36.34 E-value=53 Score=34.68 Aligned_cols=76 Identities=14% Similarity=0.230 Sum_probs=51.0
Q ss_pred EEeE-EEEEEeeCC-CCCcccHHHHHHHHHHCCCCEEEEceecCcc-CCc--------CCcccccChhhHHHHHHHHHHc
Q 006681 51 QKRI-LISGSIHYP-RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH-EPT--------QGNYYFQDRYDLVRFIKLVQQA 119 (635)
Q Consensus 51 kr~~-l~sG~iHY~-R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~H-EP~--------~G~ydF~G~~dL~~Fl~la~e~ 119 (635)
++++ +..|.-+.. |+|.+.|.+.++.+++-|+.+| +.+..- |.. ...-+..|..+|..++.+.+..
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~iv---l~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIK---LPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEE---EeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhC
Confidence 3444 345554544 4999999999999988887544 333321 110 1124667888899999998888
Q ss_pred CcEEEEecCc
Q 006681 120 GLYVHLRIGP 129 (635)
Q Consensus 120 GL~ViLR~GP 129 (635)
.++|--..||
T Consensus 255 ~l~I~nDSGp 264 (322)
T PRK10964 255 KAVVSVDTGL 264 (322)
T ss_pred CEEEecCCcH
Confidence 8888777776
No 169
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=36.24 E-value=1.8e+02 Score=31.74 Aligned_cols=72 Identities=11% Similarity=0.114 Sum_probs=53.5
Q ss_pred eeCCC---CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceee
Q 006681 60 IHYPR---STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC 132 (635)
Q Consensus 60 iHY~R---~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIc 132 (635)
+|.+| .+.+..++.++++++.+|-.=.+++=|..++ ..+.|.|... -|..++++..++.|+++++.+=|+|.
T Consensus 13 ~~qsr~~Y~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~-~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~ 89 (332)
T cd06601 13 FHQGCYGYSNRSDLEEVVEGYRDNNIPLDGLHVDVDFQD-NYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVIS 89 (332)
T ss_pred hhhCCCCCCCHHHHHHHHHHHHHcCCCCceEEEcCchhc-CCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCcee
Confidence 45555 3667788999999999986544444444443 3466666543 37899999999999999999999998
No 170
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=36.20 E-value=1.1e+02 Score=33.05 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=46.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEce----ecCccC---Cc---CC----cccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYV----FWNGHE---PT---QG----NYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYV----fWn~HE---P~---~G----~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.|.+..++.|+.|...++|+...++ -|.+-- |+ .| .|. ..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~~~~~yT---~~di~elv~yA~~rgI~vIPEI 88 (311)
T cd06570 15 IPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKASDGLYYT---QEQIREVVAYARDRGIRVVPEI 88 (311)
T ss_pred cCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCCCCCccC---HHHHHHHHHHHHHcCCEEEEee
Confidence 4789999999999999999999987 364321 11 22 232 3599999999999999999664
No 171
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=36.00 E-value=63 Score=34.93 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=50.8
Q ss_pred eeCCC---CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 60 IHYPR---STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 60 iHY~R---~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
+|..| .+.+...+.++++++.||-+=.+.+=+.... ..+.|+|.-. -|..+|++..+++|+++++.+=|+|+.+
T Consensus 13 ~~~s~~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~-~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~ 91 (339)
T cd06604 13 YQQSRWSYYPEEEVREIADEFRERDIPCDAIYLDIDYMD-GYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVD 91 (339)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhCCCcceEEECchhhC-CCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCC
Confidence 45555 3556678999999999987533333222222 3344555432 3789999999999999999998888643
No 172
>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]
Probab=35.70 E-value=1.3e+02 Score=33.24 Aligned_cols=118 Identities=20% Similarity=0.353 Sum_probs=72.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE-EecCceeeeecCCCCCCccc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCAEWNYGGFPVWL 144 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcAEw~~GG~P~WL 144 (635)
....|+.--.-.+.+|+-+|.+|-+|+.-+.. .|++.||.-.+.+--+.| +.. .||-=..|
T Consensus 131 SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~---------~d~e~~Lsdl~~APe~si~iLh---aCAhNPTG------ 192 (410)
T KOG1412|consen 131 SNPTWENHHAIFEKAGFTTVATYPYWDAENKC---------VDLEGFLSDLESAPEGSIIILH---ACAHNPTG------ 192 (410)
T ss_pred cCCchhHHHHHHHHcCCceeeeeeeecCCCce---------ecHHHHHHHHhhCCCCcEEeee---ccccCCCC------
Confidence 45679998889999999999999999965432 478888888888766543 222 35443232
Q ss_pred ccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCCccccCCCChHHHHHHHHHHHhhcCCc
Q 006681 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 224 (635)
Q Consensus 145 ~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~ 224 (635)
| || .+.=+.+|++.||+..||.-= =|+.| |. +.|+.++ -.|+.+..++.|
T Consensus 193 -----m-----DP-----T~EQW~qia~vik~k~lf~fF---DiAYQ-----Gf---ASGD~~~--DawAiR~fV~~g-- 242 (410)
T KOG1412|consen 193 -----M-----DP-----TREQWKQIADVIKSKNLFPFF---DIAYQ-----GF---ASGDLDA--DAWAIRYFVEQG-- 242 (410)
T ss_pred -----C-----CC-----CHHHHHHHHHHHHhcCceeee---ehhhc-----cc---ccCCccc--cHHHHHHHHhcC--
Confidence 2 11 122335678888876654110 03333 22 2233222 357888888887
Q ss_pred cceEeec
Q 006681 225 VPWVMCK 231 (635)
Q Consensus 225 VPwi~c~ 231 (635)
.+++.|+
T Consensus 243 ~e~fv~Q 249 (410)
T KOG1412|consen 243 FELFVCQ 249 (410)
T ss_pred CeEEEEh
Confidence 5677775
No 173
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=34.93 E-value=1.5e+02 Score=35.06 Aligned_cols=110 Identities=12% Similarity=0.138 Sum_probs=72.7
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCce
Q 006681 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPY 130 (635)
Q Consensus 51 kr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPY 130 (635)
++-+.+++..++.+.+.+.=-++|++-.++|.+.+-|=.|++ -+ .+.+|++.|++.++.++.-+-|.
T Consensus 461 ~~~f~ig~A~~P~~~~~~~d~~~L~~Ki~aGAdf~iTQ~~fd----------~~---~~~~~~~~~~~~~vpIi~GImPi 527 (612)
T PRK08645 461 KTNFSIGGAFNPNVRNLDKEVKRLEKKIEAGADYFITQPVYD----------EE---LIEELLEATKHLGVPIFIGIMPL 527 (612)
T ss_pred CCceeeeEEeCCCCCChHHHHHHHHHHHHcCCCEEEecccCC----------HH---HHHHHHHHHhcCCCCEEEEeeec
Confidence 455788888887665444333456666689999999965544 33 78889999988788888887774
Q ss_pred eee--------ecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 131 VCA--------EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 131 IcA--------Ew~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
... +|..-=+|.|+.+.=. ... +.+.++++--++..++++.++
T Consensus 528 ~s~k~~~~~~~~~~Gv~vP~~l~~~l~-~~~-d~~~~~~~gv~~a~e~i~~l~ 578 (612)
T PRK08645 528 VSYRNAEFLHNEVPGITLPEEIRERMR-AVE-DKEEAREEGVAIARELIDAAR 578 (612)
T ss_pred CCHHHHHHHHhCCCCCCCCHHHHHHHH-hcC-CchHHHHHHHHHHHHHHHHHH
Confidence 432 3545557888876200 011 224667777777777777776
No 174
>KOG0622 consensus Ornithine decarboxylase [Amino acid transport and metabolism]
Probab=34.92 E-value=69 Score=36.20 Aligned_cols=68 Identities=22% Similarity=0.260 Sum_probs=47.6
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEE-EEecCceeeeecCCCCCCc
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGFPV 142 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V-iLR~GPYIcAEw~~GG~P~ 142 (635)
...+.-+.+|+.+|+.|+|+|=+++.=.---+.+-.|.= --.|-+..++++.+.|..+ +|.+| ||||.
T Consensus 190 ~~~~~~~~lLd~ak~l~lnvvGvsfHvGSgc~d~~~y~~-Ai~dAr~vfd~g~e~Gf~m~~LdiG---------GGf~g 258 (448)
T KOG0622|consen 190 CSLDNCRHLLDMAKELELNVVGVSFHVGSGCTDLQAYRD-AISDARNVFDMGAELGFEMDILDIG---------GGFPG 258 (448)
T ss_pred CCHHHHHHHHHHHHHcCceEEEEEEEecCCCCCHHHHHH-HHHHHHHHHHHHHhcCceEEEeecC---------CCCCC
Confidence 455677899999999999999998765422222222221 1246667788889999985 58876 88874
No 175
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=34.55 E-value=74 Score=33.71 Aligned_cols=66 Identities=17% Similarity=0.293 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee--cCccC------CcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCcee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVF--WNGHE------PTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYV 131 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVf--Wn~HE------P~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYI 131 (635)
+.+.-++.++++|+.||-+=-+++= |.... ..-+.|.|+-. -|..++++..++.|+++++.+=|+|
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~ 98 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD 98 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc
Confidence 5667789999999999875555443 43221 12345666532 3899999999999999998875553
No 176
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=34.46 E-value=1.2e+02 Score=31.13 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=57.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCc-CCccc---c-cChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCC
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-QGNYY---F-QDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGG 139 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-~G~yd---F-~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG 139 (635)
.+++.-+..-+.+++.|+.+...- ...|.+. ++.-| . .....+.+-|++|++.|..+|.-. |
T Consensus 54 ~~~~~~~~l~~~l~~~gl~i~~~~--~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~-----------~ 120 (283)
T PRK13209 54 WSREQRLALVNALVETGFRVNSMC--LSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLA-----------G 120 (283)
T ss_pred CCHHHHHHHHHHHHHcCCceeEEe--cccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEC-----------C
Confidence 466677777888899999876641 1122211 11100 0 012357888999999999866421 1
Q ss_pred CCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccC
Q 006681 140 FPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFG 197 (635)
Q Consensus 140 ~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg 197 (635)
.+.|. ..+++...+.+...++.|+++.++++ |-+.|||-.+
T Consensus 121 ~~~~~--------~~~~~~~~~~~~~~l~~l~~~A~~~G---------V~i~iE~~~~ 161 (283)
T PRK13209 121 YDVYY--------EQANNETRRRFIDGLKESVELASRAS---------VTLAFEIMDT 161 (283)
T ss_pred ccccc--------cccHHHHHHHHHHHHHHHHHHHHHhC---------CEEEEeecCC
Confidence 12121 11223344555566777777776432 4556888543
No 177
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A.
Probab=34.34 E-value=76 Score=31.25 Aligned_cols=23 Identities=39% Similarity=0.293 Sum_probs=14.3
Q ss_pred CCceEEEee----cccEEEEEEcCeec
Q 006681 500 QDPLLTIWS----AGHALQVFINGQLS 522 (635)
Q Consensus 500 ~~~~L~v~s----~gh~lhvFVNg~~~ 522 (635)
...+|+|.= .+=.+.|.|||+..
T Consensus 78 ~~~tL~i~la~a~~~~~~~V~vNg~~~ 104 (167)
T PF14683_consen 78 GTYTLRIALAGASAGGRLQVSVNGWSG 104 (167)
T ss_dssp --EEEEEEEEEEETT-EEEEEETTEE-
T ss_pred CcEEEEEEeccccCCCCEEEEEcCccC
Confidence 356788763 35578999999555
No 178
>PLN02540 methylenetetrahydrofolate reductase
Probab=34.19 E-value=80 Score=37.08 Aligned_cols=89 Identities=18% Similarity=0.238 Sum_probs=59.3
Q ss_pred HHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcC--cEEEEecCceee-------eecCCCCCCccc
Q 006681 74 IQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAG--LYVHLRIGPYVC-------AEWNYGGFPVWL 144 (635)
Q Consensus 74 l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~G--L~ViLR~GPYIc-------AEw~~GG~P~WL 144 (635)
|++-.++|.+.|-|=.| ||.+ .+.+|++.|++.| +.++..+-|... +++..--+|.|+
T Consensus 162 Lk~KvdAGAdFiITQlf----------FD~d---~f~~f~~~~r~~Gi~vPIipGImPI~S~k~l~r~~~l~Gi~IP~~i 228 (565)
T PLN02540 162 LKEKVDAGADLIITQLF----------YDTD---IFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEI 228 (565)
T ss_pred HHHHHHcCCCEEeeccc----------cCHH---HHHHHHHHHHhcCCCCCEEeeecccCCHHHHHHHHhccCCcCCHHH
Confidence 33333579999998443 4555 7889999999998 667777777543 346555578888
Q ss_pred ccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 145 ~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
.+.=. ....+++..++.--++..++++.+++
T Consensus 229 ~~rLe-~~kddde~v~~~Gieia~e~~~~L~~ 259 (565)
T PLN02540 229 TAALE-PIKDNDEAVKAYGIHLGTEMCKKILA 259 (565)
T ss_pred HHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 76310 12345566666667777777777763
No 179
>PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5.3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A ....
Probab=33.96 E-value=38 Score=35.37 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
-..+++|+.|++.|-+ .|..++--|. +.+..+.+=++.|.++||.+|+++|
T Consensus 75 vS~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~i~~Kv~~al~~gl~pIvCvG 125 (244)
T PF00121_consen 75 VSAEMLKDLGCKYVII-----GHSERRQYFG-ETDEIINKKVKAALENGLTPIVCVG 125 (244)
T ss_dssp HBHHHHHHTTESEEEE-----SCHHHHHHST--BHHHHHHHHHHHHHTT-EEEEEES
T ss_pred hHHHHHHHhhCCEEEe-----ccccccCccc-cccHHHHHHHHHHHHCCCEEEEEec
Confidence 3456899999998888 6666654444 5567899999999999999999988
No 180
>COG1735 Php Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=33.61 E-value=1.6e+02 Score=32.20 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=50.6
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCccc
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEF 152 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~ 152 (635)
.+...++.|.+||=. +.+- .=.||..+..+.+++-||.+|...|+|.-+.|+ .|+...|
T Consensus 53 e~~~~~a~Gg~TIVD--------~T~~----~~GRdv~~m~~vs~atglnIV~~TGfy~~~~~p-----~~~~~~~---- 111 (316)
T COG1735 53 ELKRLMARGGQTIVD--------ATNI----GIGRDVLKMRRVAEATGLNIVAATGFYKAAFHP-----EYFALRP---- 111 (316)
T ss_pred HHHHHHHcCCCeEee--------CCcc----ccCcCHHHHHHHHHHhCCcEEEeccccccccch-----hHHhhCC----
Confidence 455566678877743 2210 112689999999999999999999999988874 7776544
Q ss_pred ccCChhhHHHHHHHHHHHHHHhh
Q 006681 153 RTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 153 Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
++.+...+++.++
T Consensus 112 ----------i~~~ae~~v~ei~ 124 (316)
T COG1735 112 ----------IEELAEFVVKEIE 124 (316)
T ss_pred ----------HHHHHHHHHHHHH
Confidence 4555555666665
No 181
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=33.51 E-value=79 Score=33.65 Aligned_cols=65 Identities=17% Similarity=0.278 Sum_probs=49.1
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceecCcc--C-----------CcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGH--E-----------PTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 62 Y~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~H--E-----------P~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
+-|+|.+.|.+.++++.+-|+.+| +++.-. | +.+...|+.|..+|...+.+++...++|--..|
T Consensus 194 ~K~Wp~e~~~~l~~~l~~~~~~iv---l~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DSG 270 (344)
T TIGR02201 194 FKCWDNDRFSALIDALHARGYEVV---LTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDSV 270 (344)
T ss_pred ccCCCHHHHHHHHHHHHhCCCeEE---EecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCCH
Confidence 445999999999999988787655 333322 1 223468899999999999999999998877777
Q ss_pred c
Q 006681 129 P 129 (635)
Q Consensus 129 P 129 (635)
|
T Consensus 271 p 271 (344)
T TIGR02201 271 P 271 (344)
T ss_pred H
Confidence 6
No 182
>PLN02561 triosephosphate isomerase
Probab=33.40 E-value=98 Score=32.66 Aligned_cols=50 Identities=14% Similarity=0.088 Sum_probs=40.5
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..+.+|+.|++.|-+ .|..++..|. +-+..+.+=++.|.++||.+|+++|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~f~-Etd~~v~~Kv~~al~~gl~pIvCvG 129 (253)
T PLN02561 80 SAEMLVNLGIPWVIL-----GHSERRALLG-ESNEFVGDKVAYALSQGLKVIACVG 129 (253)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCccC-CChHHHHHHHHHHHHCcCEEEEEcC
Confidence 456789999999988 7877776654 3356777779999999999999998
No 183
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=33.39 E-value=94 Score=32.81 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCC--cCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEP--TQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP--~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+++..++.++++++.|.+.|-+|.-+..-.+ .++.-.++ ...+.+.+++|+++|+.|.+-.
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~-~e~l~~~~~~A~~~g~~v~~H~ 180 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFS-EEELRAIVDEAHKAGLYVAAHA 180 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcC-HHHHHHHHHHHHHcCCEEEEEe
Confidence 4677889999999999999999874421111 11211122 3478899999999999887663
No 184
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=33.28 E-value=1.1e+02 Score=32.16 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=40.4
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEE
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHL 125 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViL 125 (635)
.|.+.=++.++++.+.|++.|+++++.+. + ..+...++.++++|+.|..
T Consensus 88 ~p~~~~~~di~~~~~~g~~~iri~~~~~~---------~---~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 88 YPDDVVELFVEKAAKNGIDIFRIFDALND---------V---RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred CCcHHHHHHHHHHHHcCCCEEEEeecCCh---------H---HHHHHHHHHHHHCCCeEEE
Confidence 45555688999999999999999888663 2 3788999999999988775
No 185
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=33.25 E-value=1.7e+02 Score=30.68 Aligned_cols=109 Identities=19% Similarity=0.225 Sum_probs=65.4
Q ss_pred eEEEEEEeeCCCCCcc-cH---HHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEE--EEe
Q 006681 53 RILISGSIHYPRSTPE-MW---PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLR 126 (635)
Q Consensus 53 ~~l~sG~iHY~R~~pe-~W---~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V--iLR 126 (635)
.+.+++..|+.+-|.. .- .++|++=.++|.+.+-|=.+ ||.+ .+.+|++.|++.|+.+ ++-
T Consensus 125 ~f~ig~a~~Peghp~~~~~~~~~~~L~~K~~aGA~f~iTQ~~----------fd~~---~~~~~~~~~~~~gi~~PIi~G 191 (272)
T TIGR00676 125 DFDIGVAAYPEKHPEAPNLEEDIENLKRKVDAGADYAITQLF----------FDND---DYYRFVDRCRAAGIDVPIIPG 191 (272)
T ss_pred CeeEEEEeCCCCCCCCCCHHHHHHHHHHHHHcCCCeEeeccc----------cCHH---HHHHHHHHHHHcCCCCCEecc
Confidence 4778888877652221 11 24455666789998888333 4444 7889999999997664 444
Q ss_pred cCceee-------eecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 127 IGPYVC-------AEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 127 ~GPYIc-------AEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+-|-.. .+|..-.+|.|+.+.=. ....+.+..+++--++..++++.++
T Consensus 192 i~p~~s~k~~~~~~~~~Gv~vP~~~~~~l~-~~~~~~~~~~~~gi~~~~~~~~~l~ 246 (272)
T TIGR00676 192 IMPITNFKQLLRFAERCGAEIPAWLVKRLE-KYDDDPEEVRAVGIEYATDQCEDLI 246 (272)
T ss_pred cCCcCCHHHHHHHHhccCCCCCHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444322 22566668888876200 0111223455666667777777666
No 186
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=33.16 E-value=75 Score=37.45 Aligned_cols=53 Identities=19% Similarity=0.356 Sum_probs=44.6
Q ss_pred eeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE
Q 006681 60 IHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 60 iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi 124 (635)
+=|.|.|.+.-+..++++++.|+++|+++...|.. +++...++.|+++|+.+.
T Consensus 89 vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~------------~~~~~ai~~ak~~G~~~~ 141 (593)
T PRK14040 89 LGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP------------RNLETALKAVRKVGAHAQ 141 (593)
T ss_pred eccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH------------HHHHHHHHHHHHcCCeEE
Confidence 44667787888889999999999999999877742 478899999999999864
No 187
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=32.76 E-value=3.6e+02 Score=27.09 Aligned_cols=124 Identities=20% Similarity=0.274 Sum_probs=65.7
Q ss_pred EEeEEEEEEeeCCC---CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHH-HHHHHHcCcE-EEE
Q 006681 51 QKRILISGSIHYPR---STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRF-IKLVQQAGLY-VHL 125 (635)
Q Consensus 51 kr~~l~sG~iHY~R---~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~F-l~la~e~GL~-ViL 125 (635)
||++.++.||=--. .|--.|+.++ ++..|++.|.. -|+|+.-++.+ .++.++..-. ++|
T Consensus 2 k~~v~YGsSItqG~~Asrpg~~~~~~~--aR~l~~~~iNL--------------GfsG~~~le~~~a~~ia~~~a~~~~l 65 (178)
T PF14606_consen 2 KRWVAYGSSITQGACASRPGMAYPAIL--ARRLGLDVINL--------------GFSGNGKLEPEVADLIAEIDADLIVL 65 (178)
T ss_dssp -EEEEEE-TT-TTTT-SSGGGSHHHHH--HHHHT-EEEEE--------------E-TCCCS--HHHHHHHHHS--SEEEE
T ss_pred CeEEEECChhhcCCCCCCCcccHHHHH--HHHcCCCeEee--------------eecCccccCHHHHHHHhcCCCCEEEE
Confidence 67777777776322 2555698876 67779999976 57887666554 4555554333 346
Q ss_pred ecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEec-cccccCCccccCC
Q 006681 126 RIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQ-IENEFGPVEWDIG 204 (635)
Q Consensus 126 R~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~Q-IENEyg~~~~~~~ 204 (635)
..||- .+.+.|.+.+..|++.|-+. || .=|||+++ +-.+-+.....-+
T Consensus 66 d~~~N-----------------------~~~~~~~~~~~~fv~~iR~~---hP-----~tPIllv~~~~~~~~~~~~~~~ 114 (178)
T PF14606_consen 66 DCGPN-----------------------MSPEEFRERLDGFVKTIREA---HP-----DTPILLVSPIPYPAGYFDNSRG 114 (178)
T ss_dssp EESHH-----------------------CCTTTHHHHHHHHHHHHHTT----S-----SS-EEEEE----TTTTS--TTS
T ss_pred EeecC-----------------------CCHHHHHHHHHHHHHHHHHh---CC-----CCCEEEEecCCccccccCchHH
Confidence 66652 23346888888887766432 22 34999998 5444443322223
Q ss_pred CChHHHHHHHHHHHhhc
Q 006681 205 APGKAYAKWAAQMAVGL 221 (635)
Q Consensus 205 ~~~~~Y~~wl~~~a~~~ 221 (635)
..-.++.+.+++.+..+
T Consensus 115 ~~~~~~~~~~r~~v~~l 131 (178)
T PF14606_consen 115 ETVEEFREALREAVEQL 131 (178)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677777776554
No 188
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=32.43 E-value=58 Score=34.01 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=38.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecC-ccC---CcCCcccc-cChhhHHHHHHHHHHcCcEEEEecC
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWN-GHE---PTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn-~HE---P~~G~ydF-~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
.+++.|+++.+.+|+.|+..+.|.+--. ... ...-.|-- ++..+=..+|+.+++.|+.|||-.|
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG 121 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTG 121 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-T
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECC
Confidence 6899999999999999999999964311 110 01111111 2323334589999999999999987
No 189
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=32.27 E-value=76 Score=32.55 Aligned_cols=60 Identities=18% Similarity=0.047 Sum_probs=38.1
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcC-CcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ-GNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~-G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
+.++..|+.++++|.+.|.+.-+-...++.. -.++. -...|.++.++|+++|+.+.+.+-
T Consensus 94 ~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~a~~~gv~l~lE~~ 154 (284)
T PRK13210 94 EIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR-FIEGLAWAVEQAAAAQVMLAVEIM 154 (284)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH-HHHHHHHHHHHHHHhCCEEEEEec
Confidence 4567889999999999998631100001111 01110 013678889999999999998863
No 190
>PRK06703 flavodoxin; Provisional
Probab=31.46 E-value=2.5e+02 Score=26.33 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=60.3
Q ss_pred ECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 48 INGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 48 idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.....++++...+-.-.+|..+.+.+..+++.-++.....+|-...-. |. ......+.+-+..++.|..++.++
T Consensus 46 l~~~d~viigspt~~~g~~p~~~~~f~~~l~~~~l~~k~~~vfg~g~~~----y~-~~~~a~~~l~~~l~~~G~~~~~~~ 120 (151)
T PRK06703 46 LLAYDGIILGSYTWGDGDLPYEAEDFHEDLENIDLSGKKVAVFGSGDTA----YP-LFCEAVTIFEERLVERGAELVQEG 120 (151)
T ss_pred HhcCCcEEEEECCCCCCcCcHHHHHHHHHHhcCCCCCCEEEEEccCCCC----hH-HHHHHHHHHHHHHHHCCCEEcccC
Confidence 3444555665544433345667778888887766665566666322110 11 022456677888899999877663
Q ss_pred CceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 128 GPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 128 GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
+--+ +..++..-++.++.|.++|++.++
T Consensus 121 ---~~~~-----------------~~p~~~~~~~~~~~~~~~~~~~~~ 148 (151)
T PRK06703 121 ---LKIE-----------------LAPETDEDVEKCSNFAIAFAEKFA 148 (151)
T ss_pred ---eEEe-----------------cCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 111224567788889888887766
No 191
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=31.38 E-value=1.2e+02 Score=31.72 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=28.2
Q ss_pred EEEEeeCCCCCc--ccHHHHHHHHHHCCCCEEEEcee
Q 006681 56 ISGSIHYPRSTP--EMWPDLIQKAKDGGLDVIQTYVF 90 (635)
Q Consensus 56 ~sG~iHY~R~~p--e~W~d~l~k~Ka~GlN~I~tYVf 90 (635)
+=+|+|.+..+| +.|.+.+++|++.|.|.|.+-+.
T Consensus 138 vI~S~H~f~~tP~~~~l~~~~~~~~~~gaDivKia~~ 174 (253)
T PRK02412 138 VVLSYHDFEKTPPKEEIVERLRKMESLGADIVKIAVM 174 (253)
T ss_pred EEEeeCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEec
Confidence 345999998877 55678999999999999988543
No 192
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=30.71 E-value=92 Score=28.42 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=11.9
Q ss_pred ccEEEEEEcCeecc
Q 006681 510 GHALQVFINGQLSG 523 (635)
Q Consensus 510 gh~lhvFVNg~~~~ 523 (635)
+....|||||+++|
T Consensus 40 ~~~~~v~vdg~~ig 53 (117)
T PF11008_consen 40 AVKPDVYVDGELIG 53 (117)
T ss_pred cccceEEECCEEEE
Confidence 57788999999993
No 193
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=30.68 E-value=2.4e+02 Score=30.16 Aligned_cols=87 Identities=21% Similarity=0.172 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCc
Q 006681 107 YDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGP 186 (635)
Q Consensus 107 ~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGp 186 (635)
..+.+.|+.||+.|++|+|-+|- |. |.. . ..++ +..++|.+.|++.++++.+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSiGG-----~~-~~~----------~--~~~~---~~~~~fa~sl~~~~~~~g~------- 111 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISIGG-----AN-GHV----------D--LNHT---AQEDNFVDSIVAIIKEYGF------- 111 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeC-----CC-Ccc----------c--cCCH---HHHHHHHHHHHHHHHHhCC-------
Confidence 36788999999999999999872 21 100 0 1122 3456788888888886553
Q ss_pred EEEeccccccCCccccCCCChHHHHHHHHHHHhhcC
Q 006681 187 IILSQIENEFGPVEWDIGAPGKAYAKWAAQMAVGLN 222 (635)
Q Consensus 187 II~~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g 222 (635)
=++.|+=|+........+....|.+.|+++-..++
T Consensus 112 -DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~~ 146 (312)
T cd02871 112 -DGLDIDLESGSNPLNATPVITNLISALKQLKDHYG 146 (312)
T ss_pred -CeEEEecccCCccCCcHHHHHHHHHHHHHHHHHcC
Confidence 25677777764321001123556777776655544
No 194
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=30.50 E-value=65 Score=34.33 Aligned_cols=63 Identities=16% Similarity=0.249 Sum_probs=42.9
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----cCccCC------cCCccc------ccChhhHHHHHHHHHHcCcEEEEec
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEP------TQGNYY------FQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVf----Wn~HEP------~~G~yd------F~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.+.-++.|+.|-..++|++..++- |.+.-+ ..|.+. +=-..|+.++++.|++.|+.||-.+
T Consensus 15 ~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~yA~~~gI~VIPei 93 (351)
T PF00728_consen 15 FSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVAYAKERGIEVIPEI 93 (351)
T ss_dssp B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHHHHHHcCCceeeec
Confidence 47788899999999999999998875 433221 122221 1113599999999999999999654
No 195
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=30.25 E-value=1.1e+02 Score=31.32 Aligned_cols=73 Identities=21% Similarity=0.228 Sum_probs=40.1
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcc-cccCh--hhHHHHHHHHHHcCcEEEEecCceee--eecC
Q 006681 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNY-YFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVC--AEWN 136 (635)
Q Consensus 62 Y~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~y-dF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIc--AEw~ 136 (635)
+.|+..++--..-+.+|+.|+.++-.---=..|-..+=-| .-.|. +|+ +++ +..-++|+||||..| -|.+
T Consensus 103 fykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd~sSrFlY~k~KGEvE~~v---~eL--~F~~~~i~RPG~ll~~R~esr 177 (238)
T KOG4039|consen 103 FYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGADPSSRFLYMKMKGEVERDV---IEL--DFKHIIILRPGPLLGERTESR 177 (238)
T ss_pred eEeechHHHHHHHHHHHhCCCeEEEEEeccCCCcccceeeeeccchhhhhh---hhc--cccEEEEecCcceeccccccc
Confidence 4478888888999999999997765422222222221111 01111 111 111 122478999999887 3444
Q ss_pred CCC
Q 006681 137 YGG 139 (635)
Q Consensus 137 ~GG 139 (635)
-|+
T Consensus 178 ~ge 180 (238)
T KOG4039|consen 178 QGE 180 (238)
T ss_pred ccc
Confidence 444
No 196
>PLN02877 alpha-amylase/limit dextrinase
Probab=29.92 E-value=1.1e+02 Score=38.34 Aligned_cols=21 Identities=19% Similarity=0.475 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHcCcEEEEec
Q 006681 107 YDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 107 ~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.++.++++.|+++||.|||-.
T Consensus 466 ~efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 469999999999999999884
No 197
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.66 E-value=1.4e+02 Score=31.34 Aligned_cols=60 Identities=25% Similarity=0.375 Sum_probs=40.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcC---CcccccChhhHHHHHHHHHHc-CcEEEEecCc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQ---GNYYFQDRYDLVRFIKLVQQA-GLYVHLRIGP 129 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~---G~ydF~G~~dL~~Fl~la~e~-GL~ViLR~GP 129 (635)
.++.|.+..++++++|++.|++-+. -|.. |..--...+.+.+.++.+++. ++.|.++.+|
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~----cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~ 163 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNIS----CPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP 163 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECC----CCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC
Confidence 5789999999999999999999643 3322 221112224667778888876 6666666543
No 198
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=29.65 E-value=5.7e+02 Score=28.03 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred HHHHHHHHHcCcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEE
Q 006681 110 VRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIIL 189 (635)
Q Consensus 110 ~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~ 189 (635)
.++++.|+++|+.|++- |++|. +. + .|| +.-++|++.|++.++++++ + +
T Consensus 67 ~~~~~~A~~~~v~v~~~-----------~~~~~-----~~--l--~~~---~~R~~fi~siv~~~~~~gf---D-----G 115 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-----------GDVPL-----EQ--I--SNP---TYRTQWIQQKVELAKSQFM---D-----G 115 (358)
T ss_pred HHHHHHHHHcCCEEEEE-----------CccCH-----HH--c--CCH---HHHHHHHHHHHHHHHHhCC---C-----e
Confidence 47899999999999853 23331 10 1 133 2346799999999997654 1 4
Q ss_pred eccccccCCccccCCCChHHHHHHHHHHHhh
Q 006681 190 SQIENEFGPVEWDIGAPGKAYAKWAAQMAVG 220 (635)
Q Consensus 190 ~QIENEyg~~~~~~~~~~~~Y~~wl~~~a~~ 220 (635)
+.|+=||-.... ......|...++++..+
T Consensus 116 IdIDwE~p~~~~--~~d~~~~t~llkelr~~ 144 (358)
T cd02875 116 INIDIEQPITKG--SPEYYALTELVKETTKA 144 (358)
T ss_pred EEEcccCCCCCC--cchHHHHHHHHHHHHHH
Confidence 566666643210 12234565555555433
No 199
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=29.65 E-value=2e+02 Score=31.47 Aligned_cols=60 Identities=17% Similarity=0.185 Sum_probs=45.5
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee----cCccC----------------------------CcCCcccccChhhHHHH
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVF----WNGHE----------------------------PTQGNYYFQDRYDLVRF 112 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVf----Wn~HE----------------------------P~~G~ydF~G~~dL~~F 112 (635)
.+.+...+.|+.|...++|+...++- |.+-- +..|.|- ..|+..+
T Consensus 15 ~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~~~YT---~~di~ei 91 (357)
T cd06563 15 FPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYGGFYT---QEEIREI 91 (357)
T ss_pred cCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccCceEC---HHHHHHH
Confidence 36889999999999999999998763 32211 1123333 3599999
Q ss_pred HHHHHHcCcEEEEec
Q 006681 113 IKLVQQAGLYVHLRI 127 (635)
Q Consensus 113 l~la~e~GL~ViLR~ 127 (635)
++.|++.|+.||-.+
T Consensus 92 v~yA~~rgI~VIPEI 106 (357)
T cd06563 92 VAYAAERGITVIPEI 106 (357)
T ss_pred HHHHHHcCCEEEEec
Confidence 999999999999764
No 200
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=29.62 E-value=1.8e+02 Score=30.26 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=55.5
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcC--cEEEEecCceee-------eecCCCCCCcc
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAG--LYVHLRIGPYVC-------AEWNYGGFPVW 143 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~G--L~ViLR~GPYIc-------AEw~~GG~P~W 143 (635)
.|++=-++|.+.+-|=.+. |. ..+.+|++.|++.| +.+++.+=|... +++..-++|.|
T Consensus 152 ~L~~Ki~aGA~f~iTQ~~f----------d~---~~~~~~~~~~~~~gi~vPIi~GI~p~~s~~~l~~~~~~~Gv~vP~~ 218 (274)
T cd00537 152 RLKRKVDAGADFIITQLFF----------DN---DAFLRFVDRCRAAGITVPIIPGIMPLTSYKQAKRFAKLCGVEIPDW 218 (274)
T ss_pred HHHHHHHCCCCEEeecccc----------cH---HHHHHHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHhhCCCCCHH
Confidence 3333345588999884443 22 37899999999998 556666666543 35556678999
Q ss_pred cccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 144 LKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 144 L~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
+.+.=. ....+....++.-.++..++++.+++
T Consensus 219 ~~~~l~-~~~~~~~~~~~~g~~~~~~l~~~l~~ 250 (274)
T cd00537 219 LLERLE-KLKDDAEAVRAEGIEIAAELCDELLE 250 (274)
T ss_pred HHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 876210 01122234455566677777777763
No 201
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=29.37 E-value=2.3e+02 Score=32.10 Aligned_cols=83 Identities=19% Similarity=0.163 Sum_probs=58.4
Q ss_pred ceEEECCEEeEEEEEEeeCCCCC---cccHHHHHHHHHHCCCCE--E--E-EceecCccCCcCCcccccChhhHHHHHHH
Q 006681 44 KAVIINGQKRILISGSIHYPRST---PEMWPDLIQKAKDGGLDV--I--Q-TYVFWNGHEPTQGNYYFQDRYDLVRFIKL 115 (635)
Q Consensus 44 ~~l~idGkr~~l~sG~iHY~R~~---pe~W~d~l~k~Ka~GlN~--I--~-tYVfWn~HEP~~G~ydF~G~~dL~~Fl~l 115 (635)
++..+++.-|.+|.++-+-++.+ ++.=+...+.+++.|++. | . .|. -|+-.|.+..++++ ..-+.+=|+.
T Consensus 149 ~a~~~g~~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekS-v~~~~~eL~r 226 (413)
T PTZ00372 149 NAYNIAGQAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKS-YDAFLDDLQR 226 (413)
T ss_pred HHHHcCCCEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHH-HHHHHHHHHH
Confidence 45667778888898877765532 344455667788888863 2 2 233 78778888887776 4456777899
Q ss_pred HHHcCcE-EEEecC
Q 006681 116 VQQAGLY-VHLRIG 128 (635)
Q Consensus 116 a~e~GL~-ViLR~G 128 (635)
|++.|.. |++-||
T Consensus 227 A~~LGa~~VV~HPG 240 (413)
T PTZ00372 227 CEQLGIKLYNFHPG 240 (413)
T ss_pred HHHcCCCEEEECCC
Confidence 9999998 567787
No 202
>TIGR01698 PUNP purine nucleotide phosphorylase. methylthioadenosine.
Probab=29.33 E-value=76 Score=33.16 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=31.1
Q ss_pred EECCEEeEEEEEEeeCCCC-CcccHHHHHHHHHHCCCCEEE
Q 006681 47 IINGQKRILISGSIHYPRS-TPEMWPDLIQKAKDGGLDVIQ 86 (635)
Q Consensus 47 ~idGkr~~l~sG~iHY~R~-~pe~W~d~l~k~Ka~GlN~I~ 86 (635)
.+.|++.+.+.|..|+... ...+-+--++-||++|+..|=
T Consensus 47 ~l~g~~V~~l~Gr~H~yeg~~~~~v~~~i~al~~lGv~~ii 87 (237)
T TIGR01698 47 RIGDGPVLVLGGRTHAYEGGDARAVVHPVRTARATGAETLI 87 (237)
T ss_pred EECCEEEEEEcCCCcccCCCcHHHhHHHHHHHHHcCCCEEE
Confidence 4679999999999996553 334446789999999997653
No 203
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=28.74 E-value=88 Score=34.62 Aligned_cols=56 Identities=21% Similarity=0.347 Sum_probs=39.7
Q ss_pred HHHHHHHHCCCCEEEE-ceecC---ccCCcCCcc-----cccChhhHHHHHHHHHHcCcEEEEec
Q 006681 72 DLIQKAKDGGLDVIQT-YVFWN---GHEPTQGNY-----YFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~t-YVfWn---~HEP~~G~y-----dF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.|.-+|++|+++|-+ .++=+ .|.--.-.| .|.+..|+.++++.+++.||+|++-.
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~ 97 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDL 97 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 6778899999999964 33311 222111000 57788999999999999999999773
No 204
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=28.53 E-value=91 Score=31.89 Aligned_cols=60 Identities=10% Similarity=-0.051 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+..++.++.++++|..+|.+...+..-...+.+..-.-...|.++.++|++.|+.+.+.|
T Consensus 85 ~~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNKKINCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 446788899999999999764332211111112111112467788889999999999987
No 205
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.22 E-value=39 Score=37.65 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=28.7
Q ss_pred HHHHHHHHHHcCcEE-EEecCceeeeecCCCCC--Cccccc
Q 006681 109 LVRFIKLVQQAGLYV-HLRIGPYVCAEWNYGGF--PVWLKY 146 (635)
Q Consensus 109 L~~Fl~la~e~GL~V-iLR~GPYIcAEw~~GG~--P~WL~~ 146 (635)
-++.++.|.+.||.| |.||| ||-|...+|-+ ++|+.+
T Consensus 175 aE~Lvr~A~~rGLpv~I~Rpg-~I~gds~tG~~n~~D~~~R 214 (382)
T COG3320 175 AEKLVREAGDRGLPVTIFRPG-YITGDSRTGALNTRDFLTR 214 (382)
T ss_pred HHHHHHHHhhcCCCeEEEecC-eeeccCccCccccchHHHH
Confidence 456789999999997 79997 78888776664 777754
No 206
>PLN02429 triosephosphate isomerase
Probab=27.85 E-value=1.4e+02 Score=32.64 Aligned_cols=50 Identities=20% Similarity=0.103 Sum_probs=36.5
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..+.+|+.|++.|-+ .|..++-.|.= -+..+.+=++.|.++||.+|+++|
T Consensus 139 Sa~mLkd~Gv~~Vii-----GHSERR~~f~E-td~~V~~Kv~~al~~GL~pIvCIG 188 (315)
T PLN02429 139 SVEQLKDLGCKWVIL-----GHSERRHVIGE-KDEFIGKKAAYALSEGLGVIACIG 188 (315)
T ss_pred CHHHHHHcCCCEEEe-----CccccCCCCCc-CHHHHHHHHHHHHHCcCEEEEEcC
Confidence 355789999999888 77777665532 233344445559999999999998
No 207
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=27.79 E-value=3.1e+02 Score=30.37 Aligned_cols=83 Identities=23% Similarity=0.268 Sum_probs=56.2
Q ss_pred ceEEEccceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccC--hhhHHHHHH
Q 006681 37 ASVSYDHKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQD--RYDLVRFIK 114 (635)
Q Consensus 37 ~~Vt~d~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G--~~dL~~Fl~ 114 (635)
..|.. ..+.++|...+++.|.-- --..+.-.+..+.+|+.|+..+.-..|= |+.--|.|.| ...+..+-+
T Consensus 105 ~~~~~--~~~~~g~~~~~~iaGpc~--iE~~~~~~~~A~~lk~~g~~~~r~~~~k----pRtsp~~f~g~~~e~l~~L~~ 176 (360)
T PRK12595 105 TIVDV--KGEVIGDGNQSFIFGPCS--VESYEQVEAVAKALKAKGLKLLRGGAFK----PRTSPYDFQGLGVEGLKILKQ 176 (360)
T ss_pred CEEEE--CCEEecCCCeeeEEeccc--ccCHHHHHHHHHHHHHcCCcEEEccccC----CCCCCccccCCCHHHHHHHHH
Confidence 34555 336666555555667410 0145666677888999999999876655 4444466764 468888999
Q ss_pred HHHHcCcEEEEec
Q 006681 115 LVQQAGLYVHLRI 127 (635)
Q Consensus 115 la~e~GL~ViLR~ 127 (635)
.|++.||.++-.|
T Consensus 177 ~~~~~Gl~~~t~v 189 (360)
T PRK12595 177 VADEYGLAVISEI 189 (360)
T ss_pred HHHHcCCCEEEee
Confidence 9999999988775
No 208
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=27.60 E-value=1.9e+02 Score=27.45 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=46.9
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccc-cChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCCccc
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYF-QDRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFPVWL 144 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF-~G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P~WL 144 (635)
.+.+.++.++.++++|+..+.+|.....+. ......+ .|..|-.+-+..|++.|+. . |-|.++
T Consensus 36 ~k~Lt~~e~~~i~~~Gl~i~pIyq~~~~~~-~~~~~~~~~G~~dA~~A~~~A~~lG~p----~-----------gt~IYf 99 (136)
T PF08924_consen 36 QKNLTAGEVQDIRAAGLRIFPIYQGGGRET-SDFTYGYAQGVADARDAVAAARALGFP----A-----------GTPIYF 99 (136)
T ss_dssp --B--HHHHHHHHHTT-EEEEEE---------S-B--HHHHHHHHHHHHHHHHHTT------S-----------S-EEEE
T ss_pred cCCCCHHHHHHHHHCCCEEEEEEecccccc-cccccHHHHHHHHHHHHHHHHHHcCCC----C-----------CCEEEE
Confidence 478899999999999999999998872221 1111122 2678889999999999983 1 334444
Q ss_pred ccCCCcccccCChhhHHHHHHHHHHHHHHhhhc
Q 006681 145 KYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAE 177 (635)
Q Consensus 145 ~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~ 177 (635)
-- .+-..+..+.+.+..|++.+.+.|...
T Consensus 100 av----D~d~~~~~~~~~i~~Y~~g~~~~l~~~ 128 (136)
T PF08924_consen 100 AV----DYDATDAECDSAILPYFRGWNSALGAS 128 (136)
T ss_dssp E------TS-B-HH-------HHHHHHHHHGGG
T ss_pred Ee----ecCCCchhhhhHHHHHHHHHHHHHhhC
Confidence 22 222345667778888888888888753
No 209
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=27.57 E-value=1.5e+02 Score=35.46 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=54.6
Q ss_pred CcccHHHHHHHHHHCCCCEEEEc-ee-----cCc-cCCc-CCcccc---------cChhhHHHHHHHHHHcCcEEEEecC
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTY-VF-----WNG-HEPT-QGNYYF---------QDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tY-Vf-----Wn~-HEP~-~G~ydF---------~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
.+.+|+ -++++|+++|-+- ++ |.. .-|. -|-||- ....|++++++.|+++||.||+-.=
T Consensus 76 ~~~~wd----yL~~LGV~~iwl~P~~~SGgi~g~~~tP~~D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~DlV 151 (688)
T TIGR02455 76 DDALWK----ALSEIGVQGIHNGPIKLSGGIRGREFTPSIDGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDII 151 (688)
T ss_pred ChHHHH----HHHHhCCCEEEeCcceecccccccCCCCCCCCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence 556664 5778999999862 33 431 1233 455663 3347999999999999999997632
Q ss_pred --------ceeeeecCCCCCCccc
Q 006681 129 --------PYVCAEWNYGGFPVWL 144 (635)
Q Consensus 129 --------PYIcAEw~~GG~P~WL 144 (635)
||.-||.+.+-+|.|.
T Consensus 152 pnHTs~ghdF~lAr~~~~~Y~g~Y 175 (688)
T TIGR02455 152 PAHTGKGADFRLAELAHGDYPGLY 175 (688)
T ss_pred CCCCCCCcchHHHhhcCCCCCCce
Confidence 4888999999999998
No 210
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.50 E-value=1.4e+02 Score=31.64 Aligned_cols=50 Identities=22% Similarity=0.220 Sum_probs=38.0
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
...++|+.|++.|-+ .|..++-.|+=+ ...+.+=++.|.++||..||++|
T Consensus 80 S~~mL~d~G~~~vii-----GHSERR~~~~E~-d~~i~~K~~aa~~~Gl~pIlCvG 129 (251)
T COG0149 80 SAEMLKDLGAKYVLI-----GHSERRLYFGET-DELIAKKVKAAKEAGLTPILCVG 129 (251)
T ss_pred CHHHHHHcCCCEEEE-----Cccccccccccc-hHHHHHHHHHHHHCCCeEEEEcC
Confidence 345789999998888 676665444333 34566789999999999999987
No 211
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=27.22 E-value=1.6e+02 Score=29.73 Aligned_cols=54 Identities=30% Similarity=0.412 Sum_probs=37.3
Q ss_pred EEEEeeCCCCCc--ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHH
Q 006681 56 ISGSIHYPRSTP--EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQ 118 (635)
Q Consensus 56 ~sG~iHY~R~~p--e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e 118 (635)
+=++.|.+..+| +.|.+.+++|++.|.+.+..-+.=+ +.+....|.+|.+.+++
T Consensus 116 iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKla~~~~---------~~~D~~~ll~~~~~~~~ 171 (225)
T cd00502 116 IIGSYHDFSGTPSDEELVSRLEKMAALGADIVKIAVMAN---------SIEDNLRLLKFTRQVKN 171 (225)
T ss_pred EEEEeccCCCCcCHHHHHHHHHHHHHhCCCEEEEEecCC---------CHHHHHHHHHHHHHHHh
Confidence 446899999765 7899999999999999998754321 23433455555555544
No 212
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=27.21 E-value=1.1e+02 Score=32.09 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=50.9
Q ss_pred CEEeEEEEEEeeCCC-CCcccHHHHHHHHHHCCCCEEEEceecCccC----------CcCCcccccChhhHHHHHHHHHH
Q 006681 50 GQKRILISGSIHYPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHE----------PTQGNYYFQDRYDLVRFIKLVQQ 118 (635)
Q Consensus 50 Gkr~~l~sG~iHY~R-~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HE----------P~~G~ydF~G~~dL~~Fl~la~e 118 (635)
++.+++.-|.-+..| +|++.|.+.++.+.+-|...|= .+..-+ ..++. +..|..+|..++.+++.
T Consensus 179 ~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl---~~g~~~e~~~~~~i~~~~~~~-~l~g~~sL~el~ali~~ 254 (319)
T TIGR02193 179 APYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVL---PWGNDAEKQRAERIAEALPGA-VVLPKMSLAEVAALLAG 254 (319)
T ss_pred CCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEE---eCCCHHHHHHHHHHHhhCCCC-eecCCCCHHHHHHHHHc
Confidence 344445555545544 9999999999998776776552 233211 11222 67788889999999988
Q ss_pred cCcEEEEecCc
Q 006681 119 AGLYVHLRIGP 129 (635)
Q Consensus 119 ~GL~ViLR~GP 129 (635)
..+.|--..||
T Consensus 255 a~l~I~~DSgp 265 (319)
T TIGR02193 255 ADAVVGVDTGL 265 (319)
T ss_pred CCEEEeCCChH
Confidence 88887777666
No 213
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=27.04 E-value=69 Score=30.94 Aligned_cols=29 Identities=28% Similarity=0.599 Sum_probs=20.9
Q ss_pred eEEEEEEeeCCCCCcccHHHHH-HHHHHCCCCEEEE
Q 006681 53 RILISGSIHYPRSTPEMWPDLI-QKAKDGGLDVIQT 87 (635)
Q Consensus 53 ~~l~sG~iHY~R~~pe~W~d~l-~k~Ka~GlN~I~t 87 (635)
.+++||||| ..||+.| +.+++.||++.-+
T Consensus 2 ~VYLsGEIH------tdWRe~I~~ga~~~~L~v~F~ 31 (144)
T TIGR03646 2 TVYLAGEIH------TDWREEIKEGAKSKNLPIVFS 31 (144)
T ss_pred eEEEcCccc------chHHHHHHHHHHHcCCCeEEe
Confidence 367999999 4798765 4577788876543
No 214
>PLN02784 alpha-amylase
Probab=26.92 E-value=1.6e+02 Score=36.35 Aligned_cols=57 Identities=14% Similarity=0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCEEEEceecCccCC---cCCc-cc----ccChhhHHHHHHHHHHcCcEEEEec
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWNGHEP---TQGN-YY----FQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn~HEP---~~G~-yd----F~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.+.-++++|+++|-..=+-....+ .+.. |+ |....+|.++|+.|+++||.||+.+
T Consensus 524 ~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDi 588 (894)
T PLN02784 524 GEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDA 588 (894)
T ss_pred HHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45567789999999987533221111 1111 22 3345799999999999999999884
No 215
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=26.76 E-value=2.3e+02 Score=31.87 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=46.5
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 64 R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
....+..++.++.+++.|.++=-.++. |-|.|.=-.|.=+ .+.+++++|+++++++|..
T Consensus 181 ~~~~~~le~a~~~a~~~~~~vk~lll~-nP~NPtG~~~s~e---~l~~l~~~~~~~~i~lI~D 239 (447)
T PLN02607 181 QVTPQALEAAYQEAEAANIRVRGVLIT-NPSNPLGATVQRS---VLEDILDFVVRKNIHLVSD 239 (447)
T ss_pred cCCHHHHHHHHHHHHHhCCCeeEEEEe-CCCCCcCcccCHH---HHHHHHHHHHHCCCEEEEe
Confidence 466777888888888888886445554 6788876666554 8999999999999999976
No 216
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=26.41 E-value=4.3e+02 Score=26.92 Aligned_cols=125 Identities=19% Similarity=0.195 Sum_probs=68.5
Q ss_pred ccHHHHHHHHHHCCCC-EEEE--ceecCccCC---cCC--ccc-----------ccC--hhhHHHHHHHHHHcCcEEEEe
Q 006681 68 EMWPDLIQKAKDGGLD-VIQT--YVFWNGHEP---TQG--NYY-----------FQD--RYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN-~I~t--YVfWn~HEP---~~G--~yd-----------F~G--~~dL~~Fl~la~e~GL~ViLR 126 (635)
+.-.+.++++|+.|+. +|+| |+.|...+. .-+ -+| .+| +..+.+.|+.+.+.|..+.+|
T Consensus 54 ~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~DiK~~d~~~~~~~tG~~~~~il~nl~~l~~~g~~v~iR 133 (213)
T PRK10076 54 EFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPR 133 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEEeeccCCHHHHHHHHCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 4446889999999986 3444 344422221 111 112 122 345667788888999888888
Q ss_pred cCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEEEeccccccCC--------
Q 006681 127 IGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPIILSQIENEFGP-------- 198 (635)
Q Consensus 127 ~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII~~QIENEyg~-------- 198 (635)
. |. +|++ ++++.-.+++.+|+..+. +. +|-+..- +-+|.
T Consensus 134 ~-~v----------------IPg~---nd~~e~i~~ia~~l~~l~--~~----------~~~llpy-h~~g~~Ky~~lg~ 180 (213)
T PRK10076 134 L-PL----------------IPGF---TLSRENMQQALDVLIPLG--IK----------QIHLLPF-HQYGEPKYRLLGK 180 (213)
T ss_pred E-EE----------------ECCC---CCCHHHHHHHHHHHHHcC--Cc----------eEEEecC-CccchhHHHHcCC
Confidence 5 22 3654 355555565666654430 11 2211111 11111
Q ss_pred -cc-ccCCCChHHHHHHHHHHHhhcCCcc
Q 006681 199 -VE-WDIGAPGKAYAKWAAQMAVGLNTGV 225 (635)
Q Consensus 199 -~~-~~~~~~~~~Y~~wl~~~a~~~g~~V 225 (635)
+. .+...+..+.++++++++++.|+.+
T Consensus 181 ~y~~~~~~~~~~~~l~~~~~~~~~~gl~~ 209 (213)
T PRK10076 181 TWSMKEVPAPSSADVATMREMAERAGFQV 209 (213)
T ss_pred cCccCCCCCcCHHHHHHHHHHHHHcCCeE
Confidence 00 0123567889999999999888765
No 217
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=25.91 E-value=2.8e+02 Score=30.24 Aligned_cols=75 Identities=16% Similarity=0.327 Sum_probs=52.7
Q ss_pred cceEEECCEEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEcee----cCccCCc------CCcccccC---hhhH
Q 006681 43 HKAVIINGQKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVF----WNGHEPT------QGNYYFQD---RYDL 109 (635)
Q Consensus 43 ~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVf----Wn~HEP~------~G~ydF~G---~~dL 109 (635)
.|.|++|=-| || .|.+..++.|+.|-...+|+...++- |.+--+. .|.|.=.| ..|+
T Consensus 3 ~RG~mlDvaR--------~f--~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di 72 (348)
T cd06562 3 HRGLLLDTSR--------HF--LSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDV 72 (348)
T ss_pred ccceeeeccc--------cC--CCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHH
Confidence 4556666444 33 36889999999999999999998763 5443221 23322111 3599
Q ss_pred HHHHHHHHHcCcEEEEec
Q 006681 110 VRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 110 ~~Fl~la~e~GL~ViLR~ 127 (635)
..+++.|++.|+.||..+
T Consensus 73 ~eiv~yA~~rgI~vIPEI 90 (348)
T cd06562 73 KEIVEYARLRGIRVIPEI 90 (348)
T ss_pred HHHHHHHHHcCCEEEEec
Confidence 999999999999999764
No 218
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=25.64 E-value=1.2e+02 Score=36.51 Aligned_cols=55 Identities=27% Similarity=0.379 Sum_probs=40.9
Q ss_pred HHHHHHHCCCCEEEE-ceecCccCCcC---C-cccc----------------cC-----hhhHHHHHHHHHHcCcEEEEe
Q 006681 73 LIQKAKDGGLDVIQT-YVFWNGHEPTQ---G-NYYF----------------QD-----RYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~t-YVfWn~HEP~~---G-~ydF----------------~G-----~~dL~~Fl~la~e~GL~ViLR 126 (635)
.|.-+|++|+++|+. +|+.-..|+.. | .|+| .+ .+.+..+|+.++++||-|||.
T Consensus 205 ~i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI~VILD 284 (697)
T COG1523 205 IIDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGIEVILD 284 (697)
T ss_pred HHHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCCEEEEE
Confidence 488999999999996 68766565543 2 2222 22 247888899999999999998
Q ss_pred c
Q 006681 127 I 127 (635)
Q Consensus 127 ~ 127 (635)
.
T Consensus 285 V 285 (697)
T COG1523 285 V 285 (697)
T ss_pred E
Confidence 4
No 219
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=25.46 E-value=82 Score=31.86 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=46.5
Q ss_pred EeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 59 SIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 59 ~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+..|+.+.+.....++.+.++|.+.|.+.+.....+ ...-. .++.++.++|++.|+.+|+..
T Consensus 67 ~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~~~~~~~~~---~~~~~---~~i~~v~~~~~~~g~~~iie~ 129 (235)
T cd00958 67 SLSPKDDNDKVLVASVEDAVRLGADAVGVTVYVGSEE---EREML---EELARVAAEAHKYGLPLIAWM 129 (235)
T ss_pred CCCCCCCCchhhhcCHHHHHHCCCCEEEEEEecCCch---HHHHH---HHHHHHHHHHHHcCCCEEEEE
Confidence 3445588888888889999999999997766654221 11122 378899999999999998853
No 220
>PF12733 Cadherin-like: Cadherin-like beta sandwich domain
Probab=25.41 E-value=1.7e+02 Score=24.86 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.1
Q ss_pred eEEEeecccEEEEEEcCeec
Q 006681 503 LLTIWSAGHALQVFINGQLS 522 (635)
Q Consensus 503 ~L~v~s~gh~lhvFVNg~~~ 522 (635)
.|+.........++|||.-+
T Consensus 28 ~v~a~~~~~~a~v~vng~~~ 47 (88)
T PF12733_consen 28 TVTATPEDSGATVTVNGVPV 47 (88)
T ss_pred EEEEEECCCCEEEEEcCEEc
Confidence 45555566678999999888
No 221
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=25.10 E-value=1.2e+02 Score=31.13 Aligned_cols=99 Identities=13% Similarity=0.207 Sum_probs=61.0
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEE-EEecCce----------eeeecC
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV-HLRIGPY----------VCAEWN 136 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V-iLR~GPY----------IcAEw~ 136 (635)
+.|++.++.+|..|+-.+.--+-|.... .-+|..+|.+|++.|+ .|.++ ++-+=+| |..=.+
T Consensus 90 ~~w~~~~~~~~~~~~~l~sPa~~~~~~~------~~~g~~Wl~~F~~~~~-~~~~~D~iavH~Y~~~~~~~~~~i~~~~~ 162 (239)
T PF11790_consen 90 ALWKQYMNPLRSPGVKLGSPAVAFTNGG------TPGGLDWLSQFLSACA-RGCRVDFIAVHWYGGDADDFKDYIDDLHN 162 (239)
T ss_pred HHHHHHHhHhhcCCcEEECCeecccCCC------CCCccHHHHHHHHhcc-cCCCccEEEEecCCcCHHHHHHHHHHHHH
Confidence 3488888888888888887766665432 1124458999999998 34443 3343445 111123
Q ss_pred CCCCCcccccCCCcccc-cCChhhHHHHHHHHHHHHHHhhh
Q 006681 137 YGGFPVWLKYVPGIEFR-TDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 137 ~GG~P~WL~~~p~i~~R-t~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
.-|.|.|+++-- .+ .....=.+.+..|++++++.|.+
T Consensus 163 ~~~kPIWITEf~---~~~~~~~~~~~~~~~fl~~~~~~ld~ 200 (239)
T PF11790_consen 163 RYGKPIWITEFG---CWNGGSQGSDEQQASFLRQALPWLDS 200 (239)
T ss_pred HhCCCEEEEeec---ccCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 335899998742 11 12233345678888888888864
No 222
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.92 E-value=30 Score=34.93 Aligned_cols=67 Identities=28% Similarity=0.498 Sum_probs=47.0
Q ss_pred EeEEEEEEeeCCCC---CcccHHHHHHHHHHCCCCEE--EEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 52 KRILISGSIHYPRS---TPEMWPDLIQKAKDGGLDVI--QTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 52 r~~l~sG~iHY~R~---~pe~W~d~l~k~Ka~GlN~I--~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
..+.-+|--.|.|. .|-.-++ -+.++|++++ +|-+ .--.--|||-...+|..|+++|+++||.+-|-
T Consensus 115 k~VVAaGYaDa~Rvgsv~Pl~~P~---vaa~ag~DvaMvDTai-----KDGkslFdfm~~e~l~eFvd~Ah~hGL~~AlA 186 (235)
T COG1891 115 KKVVAAGYADAHRVGSVSPLLLPE---VAAEAGADVAMVDTAI-----KDGKSLFDFMDEEELEEFVDLAHEHGLEVALA 186 (235)
T ss_pred ceEEeccccchhhccCcCccccHH---HHHhcCCCEEEEeccc-----ccchhHHhhhcHHHHHHHHHHHHHcchHHHhc
Confidence 44566777777783 4444443 4778898865 4422 12234689999999999999999999987664
No 223
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=24.81 E-value=2.6e+02 Score=26.74 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=64.3
Q ss_pred CcccccChhh-HHHHHHHHHHc-CcEEEEecCceeeeecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 99 GNYYFQDRYD-LVRFIKLVQQA-GLYVHLRIGPYVCAEWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 99 G~ydF~G~~d-L~~Fl~la~e~-GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
|.|=++.... +..|++...+. ..-+|.|--|=..-++ +....||.+.++- ++=+|.-+.. ....|++.++
T Consensus 1 Gayl~~~~~~~~~~~l~~~~~~~~~l~itR~~Pe~~~~~--~~~viWlT~~~~~--~~I~Pt~L~~---l~~~i~~fl~- 72 (136)
T PF05763_consen 1 GAYLISSKEKKIYEFLKELSEGRPGLAITRRNPEEWREK--NTPVIWLTKVEGE--NAISPTNLHK---LLDTIVRFLK- 72 (136)
T ss_pred CcEEecCcchhHHHHHHHHhccCcEEEEEecChhhcccc--CCcEEEEeccCCC--CccCchhhHH---HHHHHHHHHH-
Confidence 4555554443 77888888665 4677888545433344 5577899987742 4445554443 3334555555
Q ss_pred ccccccCCCcEEEec------cccccCCccccCCCChHHHHHHHHHHHhhcCCc
Q 006681 177 EKLFQTQGGPIILSQ------IENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 224 (635)
Q Consensus 177 ~~l~~~~GGpII~~Q------IENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~ 224 (635)
..++.||.+. +||.+-. --+|+..|++.+...+-.
T Consensus 73 -----~~~~~vViiD~lEYL~l~NgF~~--------v~KFL~~LkD~~~~~~~~ 113 (136)
T PF05763_consen 73 -----ENGNGVVIIDGLEYLILENGFES--------VLKFLASLKDYALLNNGT 113 (136)
T ss_pred -----hCCCcEEEEecHHHHHHHcCHHH--------HHHHHHHhHHHeeccCCE
Confidence 2345688877 4666533 356888999988665544
No 224
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=24.69 E-value=2.1e+02 Score=30.59 Aligned_cols=113 Identities=21% Similarity=0.317 Sum_probs=68.3
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCccccc---ChhhHHHHHHHHHHcCcEEEEecCceeeeecCCCCCC
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ---DRYDLVRFIKLVQQAGLYVHLRIGPYVCAEWNYGGFP 141 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~---G~~dL~~Fl~la~e~GL~ViLR~GPYIcAEw~~GG~P 141 (635)
.+-+.-+.-|.-+.+.|+..|-+=.-|... -....+||+ ...||.+.++-|++.|.-|+|+. + |..||-.
T Consensus 29 ~~t~~~k~yIDfAa~~G~eYvlvD~GW~~~-~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~----~--~~~~~~~ 101 (273)
T PF10566_consen 29 ATTETQKRYIDFAAEMGIEYVLVDAGWYGW-EKDDDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY----H--SETGGNV 101 (273)
T ss_dssp SSHHHHHHHHHHHHHTT-SEEEEBTTCCGS---TTT--TT-B-TT--HHHHHHHHHHTT-EEEEEE----E--CCHTTBH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccccccc-cccccccccccCCccCHHHHHHHHHHcCCCEEEEE----e--CCcchhh
Confidence 356777889999999999998887778762 223456665 45799999999999999988873 2 3332211
Q ss_pred ccccc-------------CCCccc---ccCChhhHHHHHHHHHHHHHHhhhccccccCCCcEE
Q 006681 142 VWLKY-------------VPGIEF---RTDNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (635)
Q Consensus 142 ~WL~~-------------~p~i~~---Rt~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII 188 (635)
.=|.+ +.|+++ -.+ -+.+-+|+.+|++.-++++|+..=.|++.
T Consensus 102 ~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d----~Q~~v~~y~~i~~~AA~~~LmvnfHg~~k 160 (273)
T PF10566_consen 102 ANLEKQLDEAFKLYAKWGVKGVKIDFMDRD----DQEMVNWYEDILEDAAEYKLMVNFHGATK 160 (273)
T ss_dssp HHHHCCHHHHHHHHHHCTEEEEEEE--SST----SHHHHHHHHHHHHHHHHTT-EEEETTS--
T ss_pred HhHHHHHHHHHHHHHHcCCCEEeeCcCCCC----CHHHHHHHHHHHHHHHHcCcEEEecCCcC
Confidence 11211 122221 112 24677899999999999887665555544
No 225
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=24.63 E-value=1.5e+02 Score=31.03 Aligned_cols=65 Identities=15% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHH-HcCcEEEEecC
Q 006681 64 RSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQ-QAGLYVHLRIG 128 (635)
Q Consensus 64 R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~-e~GL~ViLR~G 128 (635)
+.++++=.+..+.+-++|++.|++..+-...+...|...|.....+.+..++.+ +.-+-+++|++
T Consensus 16 ~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 81 (266)
T cd07944 16 DFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYG 81 (266)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCC
Confidence 457777889999999999999999988876666677777776556666666654 45555667775
No 226
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=24.54 E-value=1.4e+02 Score=32.36 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=28.5
Q ss_pred ccceEEECCEEeEEEEEEeeCCCCCcccHHHHH-HHHHHCCCCEEEE
Q 006681 42 DHKAVIINGQKRILISGSIHYPRSTPEMWPDLI-QKAKDGGLDVIQT 87 (635)
Q Consensus 42 d~~~l~idGkr~~l~sG~iHY~R~~pe~W~d~l-~k~Ka~GlN~I~t 87 (635)
|.|.+.|||||++++=..-.. .....+-+.+ +.+|++|+.-|-.
T Consensus 150 D~rYikVdGKPv~~Iy~p~~~--pd~~~~~~~wr~~a~~~G~~giyi 194 (345)
T PF14307_consen 150 DPRYIKVDGKPVFLIYRPGDI--PDIKEMIERWREEAKEAGLPGIYI 194 (345)
T ss_pred CCCceeECCEEEEEEECcccc--cCHHHHHHHHHHHHHHcCCCceEE
Confidence 788999999999987655222 1222232333 5678999985554
No 227
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=24.26 E-value=1.7e+02 Score=28.73 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
.+++++++|.+.|.+..... ...+.++++.|+++|+.+++-
T Consensus 68 ~~~~~~~~Gad~i~vh~~~~-------------~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 68 EAEQAFAAGADIVTVLGVAD-------------DATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred HHHHHHHcCCCEEEEeccCC-------------HHHHHHHHHHHHHcCCEEEEE
Confidence 68899999999999865431 236889999999999998875
No 228
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=24.14 E-value=1.3e+02 Score=31.04 Aligned_cols=55 Identities=22% Similarity=0.147 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHCCCCEEEEceecCccCCcCCccc---cc-ChhhHHHHHHHHHHcCcEEEEec
Q 006681 69 MWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYY---FQ-DRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 69 ~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~yd---F~-G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
..++.++.+++.|.++|.+.- .+...+.-+ +. -...|.+..++|+++|+.+.|.+
T Consensus 95 ~~~~~i~~a~~lG~~~v~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 95 IMEKAIQLARDLGIRTIQLAG----YDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHhCCCEEEecC----cccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 467788999999999997521 111111000 11 01356788899999999999884
No 229
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=24.04 E-value=2.2e+02 Score=29.91 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=56.5
Q ss_pred ceEEEccceEEECCEEeEEEEEEeeCCC--CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCccccc--ChhhHHHH
Q 006681 37 ASVSYDHKAVIINGQKRILISGSIHYPR--STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQ--DRYDLVRF 112 (635)
Q Consensus 37 ~~Vt~d~~~l~idGkr~~l~sG~iHY~R--~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~--G~~dL~~F 112 (635)
..|... .+.+.+..++++.| |- -..+.-.+..+++|+.|....+.|+|=+...| |.|. |..-|..+
T Consensus 12 s~i~~~--~~~~g~~~~~~IAG----pc~ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp----~s~~g~g~~gl~~l 81 (260)
T TIGR01361 12 TVVDVG--GVKIGEGSPIVIAG----PCSVESEEQIMETARFVKEAGAKILRGGAFKPRTSP----YSFQGLGEEGLKLL 81 (260)
T ss_pred CEEEEC--CEEEcCCcEEEEEe----CCccCCHHHHHHHHHHHHHHHHHhccCceecCCCCC----ccccccHHHHHHHH
Confidence 345553 35566555667877 22 14555567788889999998888888754444 4565 46778888
Q ss_pred HHHHHHcCcEEEEec
Q 006681 113 IKLVQQAGLYVHLRI 127 (635)
Q Consensus 113 l~la~e~GL~ViLR~ 127 (635)
-+.|++.||.++-.|
T Consensus 82 ~~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 82 RRAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHHhCCCEEEee
Confidence 999999999988775
No 230
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=23.98 E-value=45 Score=36.07 Aligned_cols=48 Identities=23% Similarity=0.400 Sum_probs=35.7
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE-Eec
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRI 127 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~ 127 (635)
-|+.|++.|..+-+.|+|+|+- +|+.- .|.-+|.++|+++|..++ +|.
T Consensus 47 lp~~w~~~i~~Ai~~Gl~IvsG-----LH~~L---------~ddpel~~~A~~~g~~i~DvR~ 95 (301)
T PF07755_consen 47 LPPSWRPVILEAIEAGLDIVSG-----LHDFL---------SDDPELAAAAKKNGVRIIDVRK 95 (301)
T ss_dssp CHCCHHHHHHHHHHTT-EEEE------SSS-H---------CCHHHHHCCHHCCT--EEETTS
T ss_pred CCHHHHHHHHHHHHcCCCEEec-----Chhhh---------ccCHHHHHHHHHcCCeEeeccC
Confidence 4588999999999999999997 66643 266789999999999776 663
No 231
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.98 E-value=1.3e+02 Score=31.51 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=40.9
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 55 LISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 55 l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
-+++=.++.|.. .+.++.+.+.|++.|++.+..+ +++ .+.+.++.++++|+.|.+-+
T Consensus 73 ~~~~~~~~~~~~----~~~l~~a~~~gv~~iri~~~~~---------~~~---~~~~~i~~ak~~G~~v~~~~ 129 (266)
T cd07944 73 KIAVMVDYGNDD----IDLLEPASGSVVDMIRVAFHKH---------EFD---EALPLIKAIKEKGYEVFFNL 129 (266)
T ss_pred EEEEEECCCCCC----HHHHHHHhcCCcCEEEEecccc---------cHH---HHHHHHHHHHHCCCeEEEEE
Confidence 344444444422 4578889999999999987554 344 78889999999999877553
No 232
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.94 E-value=1.2e+02 Score=23.68 Aligned_cols=55 Identities=16% Similarity=0.376 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEE
Q 006681 67 PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V 123 (635)
|..-.+.+.-+.+.|+|.+.++. +...++....+-|.-+ +.++.++..+++|..|
T Consensus 10 pG~L~~i~~~l~~~~~nI~~i~~-~~~~~~~~~~v~~~ve-~~~~~~~~L~~~G~~v 64 (65)
T cd04882 10 PGGLHEILQILSEEGINIEYMYA-FVEKKGGKALLIFRTE-DIEKAIEVLQERGVEL 64 (65)
T ss_pred CcHHHHHHHHHHHCCCChhheEE-EccCCCCeEEEEEEeC-CHHHHHHHHHHCCceE
Confidence 44556788889999999998886 3322234455555432 3889999999999765
No 233
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=23.66 E-value=1.2e+02 Score=31.97 Aligned_cols=79 Identities=18% Similarity=0.128 Sum_probs=51.7
Q ss_pred CEEeEEEE-EE-e-eCCCCCcccHHHHHHHHHHCCCCEEEEceecCccC-------Cc-CCcccccChhhHHHHHHHHHH
Q 006681 50 GQKRILIS-GS-I-HYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHE-------PT-QGNYYFQDRYDLVRFIKLVQQ 118 (635)
Q Consensus 50 Gkr~~l~s-G~-i-HY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HE-------P~-~G~ydF~G~~dL~~Fl~la~e 118 (635)
+++++.+. |+ . .+-|+|.+.|.+.++.+.+.|+.+|=+.-.=. .| .. +...|..|..+|..+..+.+.
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e-~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~ 251 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKD-HPAGNEIEALLPGELRNLAGETSLDEAVDLIAL 251 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhh-HHHHHHHHHhCCcccccCCCCCCHHHHHHHHHh
Confidence 45665554 34 3 35569999999999999887876554432211 00 00 124567777788888888888
Q ss_pred cCcEEEEecCc
Q 006681 119 AGLYVHLRIGP 129 (635)
Q Consensus 119 ~GL~ViLR~GP 129 (635)
..|+|-...||
T Consensus 252 a~l~I~~DSGp 262 (334)
T TIGR02195 252 AKAVVTNDSGL 262 (334)
T ss_pred CCEEEeeCCHH
Confidence 88877777665
No 234
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=23.38 E-value=1.7e+02 Score=29.25 Aligned_cols=82 Identities=20% Similarity=0.201 Sum_probs=52.4
Q ss_pred EeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCc--CCcccccChhhHHHHHHHHHHcCcEEEEecCc
Q 006681 52 KRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT--QGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGP 129 (635)
Q Consensus 52 r~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~--~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GP 129 (635)
++++++|+.+....+...=+..++.+++.|..+....+. . ..+. .+ .++ +.-++.++++..++++-.|+.-|
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~-~-l~~~~~~~-~~~-~~~~~~~~~~~i~~AD~iIi~tP-- 75 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQ-N-FAPEDLLY-ARF-DSPALKTFTEQLAQADGLIVATP-- 75 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEcc-C-CChHHHHh-ccC-CCHHHHHHHHHHHHCCEEEEECC--
Confidence 467889988765556666677778888889766544332 1 1110 11 011 13489999999999999888776
Q ss_pred eeeeecCCCCCCccc
Q 006681 130 YVCAEWNYGGFPVWL 144 (635)
Q Consensus 130 YIcAEw~~GG~P~WL 144 (635)
|| +|++|.-|
T Consensus 76 ----~Y-~~s~pg~L 85 (191)
T PRK10569 76 ----VY-KASFSGAL 85 (191)
T ss_pred ----cc-CCCCCHHH
Confidence 56 44455433
No 235
>PRK14565 triosephosphate isomerase; Provisional
Probab=23.10 E-value=2e+02 Score=30.10 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=37.3
Q ss_pred HHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 73 LIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 73 ~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
..+.+|++|++.+-+ .|..++--|+=+ +..+.+=++.|.++||.+|+++|
T Consensus 77 S~~mLkd~G~~~vii-----GHSERR~~f~Et-d~~V~~Kv~~al~~gl~pIvCiG 126 (237)
T PRK14565 77 SAKMLKECGCSYVIL-----GHSERRSTFHET-DSDIRLKAESAIESGLIPIICVG 126 (237)
T ss_pred CHHHHHHcCCCEEEE-----CcccccCcCCcC-HHHHHHHHHHHHHCCCEEEEEcC
Confidence 456789999998888 677776554322 33444445999999999999998
No 236
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.08 E-value=5e+02 Score=27.91 Aligned_cols=142 Identities=14% Similarity=0.162 Sum_probs=78.2
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEcee--cCcc---CCc------------------------CCcccccChhhHHHHHHH
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVF--WNGH---EPT------------------------QGNYYFQDRYDLVRFIKL 115 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVf--Wn~H---EP~------------------------~G~ydF~G~~dL~~Fl~l 115 (635)
.+.+..++.|+.|-..++|++..++- |.+- .|. .|.|. ..|+..+++.
T Consensus 14 ~~~~~ik~~id~ma~~K~N~lhlHltD~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~YT---~~di~eiv~y 90 (326)
T cd06564 14 YSMDFLKDIIKTMSWYKMNDLQLHLNDNLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGYYT---KEEFKELIAY 90 (326)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEeecCCcccccCCCchhhhhhhhhccccccccccCCCCCCCCccc---HHHHHHHHHH
Confidence 37899999999999999999997653 2221 111 12222 3599999999
Q ss_pred HHHcCcEEEEecCceeeeecCCCCC-CcccccCCCccccc---------CChhhHHHHHHHHHHHHHHhhhccccccCCC
Q 006681 116 VQQAGLYVHLRIGPYVCAEWNYGGF-PVWLKYVPGIEFRT---------DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGG 185 (635)
Q Consensus 116 a~e~GL~ViLR~GPYIcAEw~~GG~-P~WL~~~p~i~~Rt---------~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GG 185 (635)
|++.|+.||-.+- .-|. =+|+...|.+..+. -| +-.+++-+|++.|++.+. ++|-. .+
T Consensus 91 A~~rgI~vIPEID--------~PGH~~a~~~~~pel~~~~~~~~~~~~~l~-~~~~~t~~f~~~l~~E~~--~~f~~-~~ 158 (326)
T cd06564 91 AKDRGVNIIPEID--------SPGHSLAFTKAMPELGLKNPFSKYDKDTLD-ISNPEAVKFVKALFDEYL--DGFNP-KS 158 (326)
T ss_pred HHHcCCeEeccCC--------CcHHHHHHHHhhHHhcCCCcccCCCccccc-CCCHHHHHHHHHHHHHHH--HhcCC-CC
Confidence 9999999986542 2221 23444334332221 11 123455667777776666 45421 12
Q ss_pred cEEEecc-ccccCCccccCCCChHHHHHHHHHHHhhcCCc
Q 006681 186 PIILSQI-ENEFGPVEWDIGAPGKAYAKWAAQMAVGLNTG 224 (635)
Q Consensus 186 pII~~QI-ENEyg~~~~~~~~~~~~Y~~wl~~~a~~~g~~ 224 (635)
+.| .| -.|+-.. ....+.-..|++.+.+..++.|..
T Consensus 159 ~~~--HiGgDE~~~~-~~~~~~~~~f~~~~~~~v~~~gk~ 195 (326)
T cd06564 159 DTV--HIGADEYAGD-AGYAEAFRAYVNDLAKYVKDKGKT 195 (326)
T ss_pred CEE--Eecccccccc-CccHHHHHHHHHHHHHHHHHcCCe
Confidence 332 21 0122110 001112245677777777777654
No 237
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=23.05 E-value=93 Score=36.58 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=51.5
Q ss_pred CCEEeEEEEEEee--CCC-CCcccHHHHHHHHHHCCCCEEEEceecCccCCc-----CCcccccChhhHHHHHHHHHHcC
Q 006681 49 NGQKRILISGSIH--YPR-STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPT-----QGNYYFQDRYDLVRFIKLVQQAG 120 (635)
Q Consensus 49 dGkr~~l~sG~iH--Y~R-~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~-----~G~ydF~G~~dL~~Fl~la~e~G 120 (635)
+|+|.+ ++|-+- |-| +++|.=++++++.+.+|++ ||..=.-..-. +--|+-+--.-|..+|..|+|++
T Consensus 12 ~g~r~f-iCGVvEGFYGRPWt~EQRK~LFrrl~~~gl~---tYlYAPKDDyKHR~~WRElY~vEEa~~L~~Li~aAke~~ 87 (891)
T KOG3698|consen 12 VGNRKF-ICGVVEGFYGRPWTPEQRKHLFRRLNQLGLT---TYLYAPKDDYKHRSLWRELYNVEEATYLRNLIEAAKENN 87 (891)
T ss_pred ccccee-EEEeeccccCCCCCHHHHHHHHHHHHhcccc---eeeecccchhHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 455544 566665 888 7999999999999999998 66531100000 11344444457889999999999
Q ss_pred cEEEEecC
Q 006681 121 LYVHLRIG 128 (635)
Q Consensus 121 L~ViLR~G 128 (635)
+-.+-.+.
T Consensus 88 i~F~YAiS 95 (891)
T KOG3698|consen 88 INFVYAIS 95 (891)
T ss_pred ceEEEEcC
Confidence 98875543
No 238
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=22.81 E-value=90 Score=32.81 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=28.3
Q ss_pred HHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE-EecCceeee
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH-LRIGPYVCA 133 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi-LR~GPYIcA 133 (635)
.+.++++|+.|+ -|+.++ +|.+ +-++.|++.|-..| |-.|||..+
T Consensus 116 ~~~i~~L~~~gI-rVSLFi-----dP~~------------~qi~~A~~~GAd~VELhTG~yA~a 161 (239)
T PRK05265 116 KPAIARLKDAGI-RVSLFI-----DPDP------------EQIEAAAEVGADRIELHTGPYADA 161 (239)
T ss_pred HHHHHHHHHCCC-EEEEEe-----CCCH------------HHHHHHHHhCcCEEEEechhhhcC
Confidence 445666777777 344433 4442 34677777777766 778888765
No 239
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=22.70 E-value=7e+02 Score=28.17 Aligned_cols=105 Identities=15% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHcCcEEEEecCceeeeecCCCCCCcccccCCCc------cccc-CChhhHHHHHHHHHHHHHHhhhccccccCCCcEE
Q 006681 116 VQQAGLYVHLRIGPYVCAEWNYGGFPVWLKYVPGI------EFRT-DNGPFKAAMHKFTEKIVSMMKAEKLFQTQGGPII 188 (635)
Q Consensus 116 a~e~GL~ViLR~GPYIcAEw~~GG~P~WL~~~p~i------~~Rt-~n~~f~~~~~~~~~~I~~~ik~~~l~~~~GGpII 188 (635)
+-..|+.|..-| | ..|+|++..-.+ ++|- ..+.|-++..+|+ ..++ .+|=|+-
T Consensus 111 ~in~g~ivfASP-------W---spPa~Mktt~~~ngg~~g~Lk~e~Ya~yA~~l~~fv----~~m~------~nGvnly 170 (433)
T COG5520 111 AINPGMIVFASP-------W---SPPASMKTTNNRNGGNAGRLKYEKYADYADYLNDFV----LEMK------NNGVNLY 170 (433)
T ss_pred hcCCCcEEEecC-------C---CCchhhhhccCcCCccccccchhHhHHHHHHHHHHH----HHHH------hCCCcee
Confidence 566788888876 5 379999763221 2332 2445544444443 3345 3566887
Q ss_pred EeccccccCCccccCCC---ChHHHHHHHHHHHhhcCCccceEeec----CCCCCCcccc
Q 006681 189 LSQIENEFGPVEWDIGA---PGKAYAKWAAQMAVGLNTGVPWVMCK----QDDAPDPVIN 241 (635)
Q Consensus 189 ~~QIENEyg~~~~~~~~---~~~~Y~~wl~~~a~~~g~~VPwi~c~----~~d~p~~vi~ 241 (635)
+.-+.||..... .|.. ...+..+.++|-+....-..-.++-+ +.+.++|+++
T Consensus 171 alSVQNEPd~~p-~~d~~~wtpQe~~rF~~qyl~si~~~~rV~~pes~~~~~~~~dp~ln 229 (433)
T COG5520 171 ALSVQNEPDYAP-TYDWCWWTPQEELRFMRQYLASINAEMRVIIPESFKDLPNMSDPILN 229 (433)
T ss_pred EEeeccCCcccC-CCCcccccHHHHHHHHHHhhhhhccccEEecchhccccccccccccc
Confidence 777788875432 1221 23455566666665555333333322 3445666654
No 240
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=22.68 E-value=7.9e+02 Score=27.56 Aligned_cols=85 Identities=18% Similarity=0.142 Sum_probs=48.5
Q ss_pred EeEEEEEEeeCCCCCcccH----HHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 52 KRILISGSIHYPRSTPEMW----PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 52 r~~l~sG~iHY~R~~pe~W----~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
..++++|.+.-...|+... .+.++++++.++ .+|+...-|.... .+....++.++.|++|+-.+
T Consensus 41 D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~~~~---~v~~I~GNHD~~~---------~l~~~~~~l~~~gi~vl~~~ 108 (407)
T PRK10966 41 DAIIVAGDIFDTGSPPSYARELYNRFVVNLQQTGC---QLVVLAGNHDSVA---------TLNESRDLLAFLNTTVIASA 108 (407)
T ss_pred CEEEECCccccCCCCcHHHHHHHHHHHHHHHhcCC---cEEEEcCCCCChh---------hhhhHHHHHHHCCcEEEecc
Confidence 3577888886433343332 345667777765 4566566565432 24455677789999988543
Q ss_pred ------CceeeeecCCCCCCcccccCCC
Q 006681 128 ------GPYVCAEWNYGGFPVWLKYVPG 149 (635)
Q Consensus 128 ------GPYIcAEw~~GG~P~WL~~~p~ 149 (635)
.|..- +-..|...+|+.-.|-
T Consensus 109 ~~~~~~~~v~l-~~~~g~~~~~i~~lPy 135 (407)
T PRK10966 109 SDDLGHQVIIL-PRRDGTPGAVLCAIPF 135 (407)
T ss_pred cccCCcceEEE-ecCCCCeeeEEEECCC
Confidence 22221 2234555667766553
No 241
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=22.62 E-value=1.3e+02 Score=30.48 Aligned_cols=60 Identities=12% Similarity=-0.079 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
+.+++.++.++++|..+|.+..-+.--++..-+..-.-...+.+..++|++.|+.+.+-+
T Consensus 84 ~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 84 EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEARATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 667788999999999999763221100000001000112457888899999999998886
No 242
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=22.48 E-value=3.8e+02 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=21.5
Q ss_pred EEEeEEEeCCCcccccCCCCceEEEeecccEEEEEEcCeec
Q 006681 482 WYMTDVNIDSNEGFLKNGQDPLLTIWSAGHALQVFINGQLS 522 (635)
Q Consensus 482 WY~T~v~~~~~~~~~~~~~~~~L~v~s~gh~lhvFVNg~~~ 522 (635)
-++..+....+.. -++.+.+.+. ..++|||+.+
T Consensus 47 ~~~g~i~~~~~G~-------y~f~~~~~~~-~~l~Idg~~v 79 (136)
T smart00758 47 RWTGYLKPPEDGE-------YTFSITSDDG-ARLWIDGKLV 79 (136)
T ss_pred EEEEEEECCCCcc-------EEEEEEcCCc-EEEEECCcEE
Confidence 4556666554442 2666766655 4789999999
No 243
>PRK09739 hypothetical protein; Provisional
Probab=22.28 E-value=2.2e+02 Score=28.13 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=46.0
Q ss_pred EEeEEEEEEeeCCCCCcccHHHHHHHHHHCCCCEEEEceecCc-cCCcCCccc---cc-----ChhhHHHHHHHHHHcCc
Q 006681 51 QKRILISGSIHYPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNG-HEPTQGNYY---FQ-----DRYDLVRFIKLVQQAGL 121 (635)
Q Consensus 51 kr~~l~sG~iHY~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~-HEP~~G~yd---F~-----G~~dL~~Fl~la~e~GL 121 (635)
.+.+++.|+.+..+.+...=+..++.+++.|.++ ++.-.... ..|..+.-+ |. -..++++.++...+++.
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v-~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQV-EELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLEHDA 82 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEE-EEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHhCCE
Confidence 4678888887654455666677778888888533 32222221 112222111 11 13578999999999999
Q ss_pred EEEEec
Q 006681 122 YVHLRI 127 (635)
Q Consensus 122 ~ViLR~ 127 (635)
.|+.=|
T Consensus 83 iV~~~P 88 (199)
T PRK09739 83 LVFVFP 88 (199)
T ss_pred EEEECc
Confidence 888654
No 244
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and their hypothetical homologs. Members in this subfamily show high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=22.21 E-value=2.7e+02 Score=30.82 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=36.6
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
..|...++++++.|++.|..+...-.-....+. + -...+++.|+++||.|+.+.
T Consensus 245 ~~~~~~l~~i~a~~a~~i~P~~~~l~~~~~~~~--~----~~~~~v~~Ah~~GL~V~~WT 298 (356)
T cd08560 245 ATWSPSMDELKARGVNIIAPPIWMLVDPDENGK--I----VPSEYAKAAKAAGLDIITWT 298 (356)
T ss_pred ccHHHHHHHHHhCCccEecCchhhccccccccc--c----CCHHHHHHHHHcCCEEEEEE
Confidence 348888999999999987765432222211111 1 24688999999999998663
No 245
>PLN02389 biotin synthase
Probab=21.98 E-value=1.3e+02 Score=33.36 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred HHHHHHHHHCCCCEEEEcee--cCccCCcCCcccccChhhHHHHHHHHHHcCcEE
Q 006681 71 PDLIQKAKDGGLDVIQTYVF--WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVf--Wn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V 123 (635)
++.++++|++|++.+..-+= -..+.-.-..-+|+ +..+.++.|++.||.|
T Consensus 178 ~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e---~rl~ti~~a~~~Gi~v 229 (379)
T PLN02389 178 KEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYD---DRLETLEAVREAGISV 229 (379)
T ss_pred HHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHH---HHHHHHHHHHHcCCeE
No 246
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.97 E-value=1.7e+02 Score=31.88 Aligned_cols=43 Identities=19% Similarity=0.145 Sum_probs=35.5
Q ss_pred HHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 72 DLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 72 d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
+.++++.+.|++.|++.++++.- ..+.+.++.++++|+.|..-
T Consensus 92 ~dl~~a~~~gvd~iri~~~~~e~------------~~~~~~i~~ak~~G~~v~~~ 134 (337)
T PRK08195 92 DDLKMAYDAGVRVVRVATHCTEA------------DVSEQHIGLARELGMDTVGF 134 (337)
T ss_pred HHHHHHHHcCCCEEEEEEecchH------------HHHHHHHHHHHHCCCeEEEE
Confidence 66899999999999998866532 25789999999999988765
No 247
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.69 E-value=3.8e+02 Score=20.67 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=39.5
Q ss_pred CcccHHHHHHHHHHCCCCEEEEceecCccCCcCCc----ccc--cChhhHHHHHHHHHHcCcEEE
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGN----YYF--QDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~----ydF--~G~~dL~~Fl~la~e~GL~Vi 124 (635)
.|....+.++.+.+.|+|.+++...=...+-.+|. +.+ .+..++...++..++.|..|.
T Consensus 8 ~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 8 RPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred CCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 45667899999999999999875431111101333 233 344678899999999997653
No 248
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=21.66 E-value=2.4e+02 Score=28.00 Aligned_cols=65 Identities=18% Similarity=0.161 Sum_probs=42.0
Q ss_pred EEEEEeeCCCCCcccHHHHHHHHH-HCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEecC
Q 006681 55 LISGSIHYPRSTPEMWPDLIQKAK-DGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIG 128 (635)
Q Consensus 55 l~sG~iHY~R~~pe~W~d~l~k~K-a~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~G 128 (635)
+..+.+.+.. ++.+.+.+++.. +.|+-.|..+-.. +.++........+++++|+|+|+-|++-+|
T Consensus 73 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~Gv~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~pv~~H~g 138 (273)
T PF04909_consen 73 IGFAAIPPPD--PEDAVEELERALQELGFRGVKLHPDL-------GGFDPDDPRLDDPIFEAAEELGLPVLIHTG 138 (273)
T ss_dssp EEEEEETTTS--HHHHHHHHHHHHHTTTESEEEEESSE-------TTCCTTSGHCHHHHHHHHHHHT-EEEEEES
T ss_pred EEEEEecCCC--chhHHHHHHHhccccceeeeEecCCC-------CccccccHHHHHHHHHHHHhhccceeeecc
Confidence 3444555444 455666665555 9999999875432 223333333336999999999999999987
No 249
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=21.41 E-value=2e+02 Score=33.44 Aligned_cols=53 Identities=21% Similarity=0.335 Sum_probs=44.4
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 62 Y~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
|...|.+.-+..++++.+.|+++|+++.+.|.. +++...++.+++.|..+...
T Consensus 91 y~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv------------~nl~~ai~~vk~ag~~~~~~ 143 (499)
T PRK12330 91 YRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP------------RNLEHAMKAVKKVGKHAQGT 143 (499)
T ss_pred ccCcchhHHHHHHHHHHHcCCCEEEEEecCChH------------HHHHHHHHHHHHhCCeEEEE
Confidence 555677788889999999999999998887743 58999999999999987443
No 250
>PRK07094 biotin synthase; Provisional
Probab=21.35 E-value=96 Score=32.96 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCCCEEEEcee---cCccCCcCCcccccChhhHHHHHHHHHHcCcEE
Q 006681 71 PDLIQKAKDGGLDVIQTYVF---WNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV 123 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVf---Wn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V 123 (635)
++.++++|++|++.|...+= -..++......+++ +..+.++.++++|+.|
T Consensus 129 ~e~l~~Lk~aG~~~v~~glEs~~~~~~~~i~~~~s~~---~~~~~i~~l~~~Gi~v 181 (323)
T PRK07094 129 YEEYKAWKEAGADRYLLRHETADKELYAKLHPGMSFE---NRIACLKDLKELGYEV 181 (323)
T ss_pred HHHHHHHHHcCCCEEEeccccCCHHHHHHhCCCCCHH---HHHHHHHHHHHcCCee
Confidence 56788888888888775331 11111111223444 7778899999999865
No 251
>PRK10658 putative alpha-glucosidase; Provisional
Probab=21.04 E-value=1.9e+02 Score=34.62 Aligned_cols=66 Identities=18% Similarity=0.334 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHCCCCE--EEEceecCccCCcCCcccccCh--hhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 67 PEMWPDLIQKAKDGGLDV--IQTYVFWNGHEPTQGNYYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 67 pe~W~d~l~k~Ka~GlN~--I~tYVfWn~HEP~~G~ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
.+.-.+.++++|+.|+-+ |..=.+|.-. -.-+.|.|+-. -|..++++..++.|+++++.+=|||..
T Consensus 282 e~~v~~~~~~~r~~~iP~d~i~lD~~w~~~-~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~ 351 (665)
T PRK10658 282 EATVNSFIDGMAERDLPLHVFHFDCFWMKE-FQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQ 351 (665)
T ss_pred HHHHHHHHHHHHHcCCCceEEEEchhhhcC-CceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCC
Confidence 344567889999999864 3333456421 11245555432 278999999999999999999999864
No 252
>PF08306 Glyco_hydro_98M: Glycosyl hydrolase family 98; InterPro: IPR013191 This domain is the putative catalytic domain of glycosyl hydrolase family 98 proteins.; PDB: 2VNO_B 2VNR_A 2VNG_B 2WMH_A 2WMG_A 2WMF_A 2WMK_A 2WMJ_B 2WMI_B.
Probab=21.01 E-value=87 Score=34.22 Aligned_cols=89 Identities=20% Similarity=0.424 Sum_probs=47.2
Q ss_pred EEEEEEeeCCC------CCcccHHHHHHHHHHC-CCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 54 ILISGSIHYPR------STPEMWPDLIQKAKDG-GLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 54 ~l~sG~iHY~R------~~pe~W~d~l~k~Ka~-GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
.+.||. |.+- .+.+-|++..|+--.. |+|-+|-| |..-++.. ....+.|++|++.|-|.+
T Consensus 104 q~~sgG-~~~~y~~~~~~~~~~~~e~fr~Ypnf~G~n~~Eqf--Wgf~~~~~--------~~~A~lLkl~akYGGy~i-- 170 (324)
T PF08306_consen 104 QPSSGG-HFPDYSAYHDIENTWYEEFFRDYPNFQGFNYAEQF--WGFDDPGS--------EHFADLLKLCAKYGGYFI-- 170 (324)
T ss_dssp EEEECC-G-TTT-GCCG--HHHHHHHHHH-TTEEEEEEE--T--TS--TTHH--------HHHHHHHHHHHHTT-EEE--
T ss_pred EecCCC-CCCCccccccCChHHHHHHHHhCccccccccHhhh--eecCCchh--------HHHHHHHHHHHHhCceEE--
Confidence 346777 8433 4445556666665543 88877775 55545443 367888999999998872
Q ss_pred cCceeeeecCCC-CCCcccccCCCcccccCChhhHHHHHHHH
Q 006681 127 IGPYVCAEWNYG-GFPVWLKYVPGIEFRTDNGPFKAAMHKFT 167 (635)
Q Consensus 127 ~GPYIcAEw~~G-G~P~WL~~~p~i~~Rt~n~~f~~~~~~~~ 167 (635)
-++-+++ .+-.|+-. ..++.|+++++++-
T Consensus 171 -----Ws~~~N~~am~k~~~~-------~~~~~~~~A~~~y~ 200 (324)
T PF08306_consen 171 -----WSDQNNPIAMEKWFGE-------QRNPEFKDACEKYS 200 (324)
T ss_dssp -----EE---GGGHHHHHCCC-------CCSHHHHHHHHHHG
T ss_pred -----eecCCChHHHHHhhhh-------ccCHHHHHHHHHhh
Confidence 2232222 12222221 25788888888873
No 253
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=20.89 E-value=4.2e+02 Score=29.07 Aligned_cols=83 Identities=16% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCcccHHHHHHHHHHCCCCEEEEcee-cCc---------cCCcCCcccccChhhHHHHHHHHHHcCcEEEEecCceeee
Q 006681 64 RSTPEMWPDLIQKAKDGGLDVIQTYVF-WNG---------HEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRIGPYVCA 133 (635)
Q Consensus 64 R~~pe~W~d~l~k~Ka~GlN~I~tYVf-Wn~---------HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~GPYIcA 133 (635)
++||..|-+ .++..|+-++-|.++ |.. ..+++|+|. -.++++++|+..|..= =.|+-
T Consensus 45 ~iPp~~~id---aAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~-----~a~kLv~lak~yGfDG-----w~iN~ 111 (339)
T cd06547 45 TIPPADWIN---AAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFP-----VADKLVEVAKYYGFDG-----WLINI 111 (339)
T ss_pred cCCCcHHHH---HHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchH-----HHHHHHHHHHHhCCCc-----eEeee
Confidence 478887744 789999999999865 751 111444443 3478899999877642 22333
Q ss_pred ecCCCCCCcccccCCCcccccCChhhHHHHHHHHHHHHHHhhh
Q 006681 134 EWNYGGFPVWLKYVPGIEFRTDNGPFKAAMHKFTEKIVSMMKA 176 (635)
Q Consensus 134 Ew~~GG~P~WL~~~p~i~~Rt~n~~f~~~~~~~~~~I~~~ik~ 176 (635)
|... .++.-++.+..|++++-+.+++
T Consensus 112 E~~~-----------------~~~~~~~~l~~F~~~L~~~~~~ 137 (339)
T cd06547 112 ETEL-----------------GDAEKAKRLIAFLRYLKAKLHE 137 (339)
T ss_pred eccC-----------------CcHHHHHHHHHHHHHHHHHHhh
Confidence 3321 1445668888899988888874
No 254
>KOG3833 consensus Uncharacterized conserved protein, contains RtcB domain [Function unknown]
Probab=20.72 E-value=1.2e+02 Score=33.48 Aligned_cols=54 Identities=19% Similarity=0.217 Sum_probs=46.8
Q ss_pred ccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcE--EE-Eec
Q 006681 68 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLY--VH-LRI 127 (635)
Q Consensus 68 e~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~--Vi-LR~ 127 (635)
-.|++.+.|++..|+ +|+..-+--..|..|+.| +|+.+.+++|...||- ++ |||
T Consensus 443 ~~~~sV~D~L~~~~I-~iR~aSpklvmEEAPesY-----KdVtdVVdtc~~aGiskK~~klrP 499 (505)
T KOG3833|consen 443 LTHESVLDKLRSRGI-AIRVASPKLVMEEAPESY-----KDVTDVVDTCDAAGISKKAIKLRP 499 (505)
T ss_pred CcHHHHHHHHHhCCe-EEEeCCccchhhhCchhh-----hhHHHHhhhhhhcccchhhhcccc
Confidence 459999999999998 778888888999999998 5899999999999996 33 665
No 255
>PLN03036 glutamine synthetase; Provisional
Probab=20.69 E-value=2.2e+02 Score=32.36 Aligned_cols=65 Identities=22% Similarity=0.338 Sum_probs=46.8
Q ss_pred HHHHHHHHHHCCCCEEEEceecCccCCcCCcccccCh----------hhHHHH--HHHHHHcCcEEEEecCceeeeecCC
Q 006681 70 WPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDR----------YDLVRF--IKLVQQAGLYVHLRIGPYVCAEWNY 137 (635)
Q Consensus 70 W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~----------~dL~~F--l~la~e~GL~ViLR~GPYIcAEw~~ 137 (635)
-++..+.+.++|+++-.+ .||-.||||.|.=. ..+-|+ -++|+++|+.+..-|=|+. ++|+.
T Consensus 232 ~~~i~~a~~~~GI~Ie~~-----~~E~gpGQ~Ei~l~~~d~L~aAD~~~l~R~ivk~VA~~~Gl~ATFMPKP~~-gd~~G 305 (432)
T PLN03036 232 SDAHYKACLYAGINISGT-----NGEVMPGQWEYQVGPSVGIDAGDHIWCSRYILERITEQAGVVLTLDPKPIE-GDWNG 305 (432)
T ss_pred HHHHHHHHHHCCCCeEEE-----EcCcCCCceEEecCCChHHHHHHHHHHHHHHHHHHHHHhCCEEEEcCCcCC-CCcCC
Confidence 344566789999998887 89999999988611 122222 2567889999999998863 56776
Q ss_pred CCC
Q 006681 138 GGF 140 (635)
Q Consensus 138 GG~ 140 (635)
-|.
T Consensus 306 SGm 308 (432)
T PLN03036 306 AGC 308 (432)
T ss_pred CCc
Confidence 554
No 256
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=20.61 E-value=2.6e+02 Score=30.05 Aligned_cols=69 Identities=22% Similarity=0.471 Sum_probs=49.1
Q ss_pred CcccHHHHHHHHHHCCCCEEEEcee-cCc-cCCcCCc-----ccccCh--hhHHHHHHHHHHcCcEEEEecCceeeee
Q 006681 66 TPEMWPDLIQKAKDGGLDVIQTYVF-WNG-HEPTQGN-----YYFQDR--YDLVRFIKLVQQAGLYVHLRIGPYVCAE 134 (635)
Q Consensus 66 ~pe~W~d~l~k~Ka~GlN~I~tYVf-Wn~-HEP~~G~-----ydF~G~--~dL~~Fl~la~e~GL~ViLR~GPYIcAE 134 (635)
+.++-.+.++++++.||-+=.+++= |.. ++..-|. |.|+-. -|..++++..++.|++|++.+=|+|+.+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~ 98 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADD 98 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecC
Confidence 6677889999999999876555543 532 2322232 333322 3899999999999999999998888643
No 257
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=20.58 E-value=1.9e+02 Score=31.58 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=35.9
Q ss_pred HHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEec
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLRI 127 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR~ 127 (635)
.+.|+++.+.|++.|++.++.+.. ..+.+.++.+++.|+.|..-+
T Consensus 90 ~~dl~~a~~~gvd~iri~~~~~e~------------d~~~~~i~~ak~~G~~v~~~l 134 (333)
T TIGR03217 90 VHDLKAAYDAGARTVRVATHCTEA------------DVSEQHIGMARELGMDTVGFL 134 (333)
T ss_pred HHHHHHHHHCCCCEEEEEeccchH------------HHHHHHHHHHHHcCCeEEEEE
Confidence 356899999999999998865422 257899999999999887553
No 258
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=20.55 E-value=1.8e+02 Score=26.66 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=31.0
Q ss_pred CCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEE
Q 006681 65 STPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVH 124 (635)
Q Consensus 65 ~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~Vi 124 (635)
.+++..++.++.+++.|+..|=.. +| ..-.+.+++|+++||.++
T Consensus 63 ~~~~~~~~~v~~~~~~g~~~v~~~---------~g-------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 63 VPPDKVPEIVDEAAALGVKAVWLQ---------PG-------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp S-HHHHHHHHHHHHHHT-SEEEE----------TT-------S--HHHHHHHHHTT-EEE
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEE---------cc-------hHHHHHHHHHHHcCCEEE
Confidence 478899999999999998766441 11 255788999999999875
No 259
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.49 E-value=6e+02 Score=26.45 Aligned_cols=83 Identities=8% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEE--EEecCceeeeecCCCCCCcccccCC
Q 006681 71 PDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYV--HLRIGPYVCAEWNYGGFPVWLKYVP 148 (635)
Q Consensus 71 ~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~V--iLR~GPYIcAEw~~GG~P~WL~~~p 148 (635)
++.++.+++.|+++|+.++- .|.--.-+.....+..+|-+.++++++.+ +.-=+||. +
T Consensus 14 ~~a~~~~~~~G~~~~qif~~----~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~---i------------- 73 (274)
T TIGR00587 14 QAAYNRAAEIGATAFMFFLK----SPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYL---I------------- 73 (274)
T ss_pred HHHHHHHHHhCCCEEEEEec----CccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCee---e-------------
Confidence 57899999999999999653 11111111122347888889999998863 33335553 1
Q ss_pred CcccccCChhhHHHHHHHHHHHHHHhh
Q 006681 149 GIEFRTDNGPFKAAMHKFTEKIVSMMK 175 (635)
Q Consensus 149 ~i~~Rt~n~~f~~~~~~~~~~I~~~ik 175 (635)
.+=+.|+.-++..-+.+.+.++.-+
T Consensus 74 --Nlas~~~~~r~~sv~~~~~~i~~A~ 98 (274)
T TIGR00587 74 --NLASPDEEKEEKSLDVLDEELKRCE 98 (274)
T ss_pred --ecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2334456666665555555555444
No 260
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=20.48 E-value=3.5e+02 Score=28.35 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=46.2
Q ss_pred CEEeEEEEEEeeCCCCC-------------cccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHH
Q 006681 50 GQKRILISGSIHYPRST-------------PEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLV 116 (635)
Q Consensus 50 Gkr~~l~sG~iHY~R~~-------------pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la 116 (635)
.-+++++..++-|+|.. .++.++.++++++.|.|+|=+ -|+.+ +..++++
T Consensus 86 n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~--~k~I~---------------~~a~~~l 148 (261)
T cd03334 86 NPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILV--EKSVS---------------RIAQDLL 148 (261)
T ss_pred CCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE--CCccC---------------HHHHHHH
Confidence 35788999999998843 445567899999999999854 23321 3347888
Q ss_pred HHcCcEEEEecC
Q 006681 117 QQAGLYVHLRIG 128 (635)
Q Consensus 117 ~e~GL~ViLR~G 128 (635)
.++|+.++-|+.
T Consensus 149 ~k~gI~~v~~v~ 160 (261)
T cd03334 149 LEAGITLVLNVK 160 (261)
T ss_pred HHCCCEEEEecC
Confidence 999999998864
No 261
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=20.29 E-value=2.3e+02 Score=33.39 Aligned_cols=53 Identities=19% Similarity=0.303 Sum_probs=42.9
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 62 Y~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
|...|.+.-+..++++.+.|++.|+++.+.|.- +++...++.|+++|+.|..-
T Consensus 85 ~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~------------~n~~~~i~~ak~~G~~v~~~ 137 (582)
T TIGR01108 85 YRHYADDVVERFVKKAVENGMDVFRIFDALNDP------------RNLQAAIQAAKKHGAHAQGT 137 (582)
T ss_pred cccCchhhHHHHHHHHHHCCCCEEEEEEecCcH------------HHHHHHHHHHHHcCCEEEEE
Confidence 333456667778999999999999999887742 47999999999999987654
No 262
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=20.14 E-value=3.2e+02 Score=31.31 Aligned_cols=111 Identities=14% Similarity=0.098 Sum_probs=63.9
Q ss_pred hccchhHHHHHHHHHhhhcccccccceEEEccc--eEE-ECCEEeEEEEEE-eeCCCCCcccHHHHHHHHHHCCCCEEEE
Q 006681 12 MLGANVKVLMLVLLSFCSWEISFVKASVSYDHK--AVI-INGQKRILISGS-IHYPRSTPEMWPDLIQKAKDGGLDVIQT 87 (635)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vt~d~~--~l~-idGkr~~l~sG~-iHY~R~~pe~W~d~l~k~Ka~GlN~I~t 87 (635)
+..+.-..+.+++.|++...-.-.-..-+|... .+. ..|.+.+.+.-. -.-++.+.+..++.++++++.+.++=-+
T Consensus 124 it~Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l 203 (496)
T PLN02376 124 MSGGATGANETIMFCLADPGDVFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGL 203 (496)
T ss_pred EccchHHHHHHHHHHhCCCCCEEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEE
Confidence 344555666777777765421111111123321 122 245554443211 0123456666666666666656655445
Q ss_pred ceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 88 YVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 88 YVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
++. |-|-|.=-.|+=+ .+.+++++|+++++++|..
T Consensus 204 ~l~-nP~NPTG~~~s~e---~l~~L~~~a~~~~i~lI~D 238 (496)
T PLN02376 204 ILT-NPSNPLGTMLDKD---TLTNLVRFVTRKNIHLVVD 238 (496)
T ss_pred EEc-CCCCCCCccCCHH---HHHHHHHHHHHcCCEEEEE
Confidence 665 8888887777655 8999999999999998866
No 263
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=20.07 E-value=2.1e+02 Score=33.88 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=43.4
Q ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEceecCccCCcCCcccccChhhHHHHHHHHHHcCcEEEEe
Q 006681 62 YPRSTPEMWPDLIQKAKDGGLDVIQTYVFWNGHEPTQGNYYFQDRYDLVRFIKLVQQAGLYVHLR 126 (635)
Q Consensus 62 Y~R~~pe~W~d~l~k~Ka~GlN~I~tYVfWn~HEP~~G~ydF~G~~dL~~Fl~la~e~GL~ViLR 126 (635)
|-..|.+.-+..++++++.|+++++++-+.| |. +++...++.+++.|+.+..-
T Consensus 90 y~~~~d~vv~~~v~~a~~~Gidv~Rifd~ln---------d~---~n~~~~i~~~k~~G~~~~~~ 142 (596)
T PRK14042 90 YRNYADDVVRAFVKLAVNNGVDVFRVFDALN---------DA---RNLKVAIDAIKSHKKHAQGA 142 (596)
T ss_pred cccCChHHHHHHHHHHHHcCCCEEEEcccCc---------ch---HHHHHHHHHHHHcCCEEEEE
Confidence 4456777888899999999999999987777 22 38889999999999987644
Done!